RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11640
(552 letters)
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 65.7 bits (159), Expect = 6e-13
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 295 REYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPY 354
E L R + + NK R + ++ H R DK I+F+ + + + P
Sbjct: 61 YEALRAWEEARRIA-FNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLIPA 117
Query: 355 IYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQR 414
I TS+ ER +IL+ F+ I S+V D D+P+ANV + +S GS R+ QR
Sbjct: 118 ITHRTSREEREEILEGFRTGR-FRAIVSSQVLDEGIDVPDANVGVIMSGS-GSAREYIQR 175
Query: 415 LGRILRAKKGAIAEEYNAFFYTLVSQDT 442
LGRILR KG + A Y L+S+ T
Sbjct: 176 LGRILRPSKG----KKEAVLYELISRGT 199
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 52.2 bits (124), Expect = 5e-08
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 23/141 (16%)
Query: 325 YHERRGDKTIVFSDNVFALKHYAVKMNKP-----YIYGPTSQSERI--------QILQNF 371
++ K IVF++ K ++ K G S+ IL F
Sbjct: 156 LQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF 215
Query: 372 KLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYN 431
+ N + + V + D+PE ++++ S + QR GR R G +
Sbjct: 216 A-RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHMPGRV----- 268
Query: 432 AFFYTLVSQDTMEMSYSRKRQ 452
L+++ T + +Y +
Sbjct: 269 ---IILMAKGTRDEAYYWSSR 286
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 43.7 bits (102), Expect = 3e-05
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 217 EVHTIPAKMFRRVLT-IVQSHCKLGLTATLLREDDKIADLNFLIGP 261
E H K +++ + K GL+ +L I + G
Sbjct: 233 ECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGE 278
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 40.2 bits (93), Expect = 2e-04
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
EVH +PA+ + ++ + + +LGLTAT
Sbjct: 177 EVHHLPAESYVQIAQMSIAPFRLGLTATF 205
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 32.7 bits (74), Expect = 0.079
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 354 YIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQ 413
+G + E +++ +F N + + + +T D+P AN +I + Q Q
Sbjct: 62 IGHGQMRERELERVMNDFHHQRF-NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 120
Query: 414 RLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR 451
GR+ R+ + A+ + L + ++KR
Sbjct: 121 LRGRVGRSH-------HQAYAWLLTPHPKAMTTDAQKR 151
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
{Thermotoga maritima [TaxId: 2336]}
Length = 332
Score = 32.7 bits (74), Expect = 0.10
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 25/123 (20%)
Query: 316 YRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNP 375
+ L ER V + V L+ A + G T + I F+
Sbjct: 225 KETVRKLRETRERGNRIVAVGTTTVRTLETIARLPEQEEYVGKTD----LFIYPPFEF-- 278
Query: 376 KVNTIFVSKVAD---TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNA 432
K+ D T+F LP + +L+ +++ G ++ A + A+ Y
Sbjct: 279 --------KLVDALVTNFHLPRSTLLMLVAAFAGKDF--------VMEAYREAVKRRYRF 322
Query: 433 FFY 435
F +
Sbjct: 323 FSF 325
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 30.6 bits (69), Expect = 0.23
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR-PSAGKSLVGVTACCTVRKRALVLCNSGVSVE--- 66
K K K K +++ K + + +K++ G+ V R +C GV
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLG-NGRLEAMCFDGVKRLCHI 60
Query: 67 QWKHQFKLWSTADDSMICRFTSEAKDK 93
+ K + K+W D ++ +K
Sbjct: 61 RGKLRKKVWINTSDIILVGLRDYQDNK 87
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 29.1 bits (65), Expect = 0.35
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSA 38
++ KK+ +KKK K+ SA
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSA 27
Score = 25.6 bits (56), Expect = 5.5
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRAL 25
Score = 25.6 bits (56), Expect = 6.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKK 32
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
Score = 25.2 bits (55), Expect = 7.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 20 KKKKKKKKKKKKKKKRPSAGK 40
++ KK+ +KKK P+A K
Sbjct: 2 VTPREPKKRTTRKKKDPNAPK 22
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 29.1 bits (65), Expect = 0.45
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAG 39
K + + K+ K+K PS+G
Sbjct: 75 VKSLSPQDRAAYKEYISNKRKSGPSSG 101
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 28.6 bits (64), Expect = 0.46
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGV----TACCTVRKRAL 56
K + K +K K K + + S+ T CT +
Sbjct: 14 AQKSAMARAKNLEKAKAAGKGSQLEAN-KKAMSIQCKVCMQTFICTTSEVKC 64
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.1 bits (68), Expect = 0.55
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
F + + +K++KK+ ++KK+ + +++K
Sbjct: 94 FTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKF 126
Score = 28.5 bits (64), Expect = 1.6
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
+K++KK+ ++KK+ + +++K +
Sbjct: 104 QKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.1 bits (63), Expect = 2.1
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+K++KK+ ++KK+ + +++K
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFE 127
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 30.3 bits (68), Expect = 0.58
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ +K+++ ++K ++ K K+K ++
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEK 329
Score = 29.9 bits (67), Expect = 0.74
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+K+++ ++K ++ K K+K +K+R
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 1.4
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
FR++ K+ +K+++ ++K ++ K K+K
Sbjct: 296 FRNMFLQAVKENQKRRETEEKMRRAKLAKEKAE 328
Score = 29.2 bits (65), Expect = 1.5
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKK 33
K+++ ++K ++ K K+K +K++
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.0 bits (62), Expect = 2.8
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +K+++ ++K ++ K K+K +K
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 27.6 bits (61), Expect = 3.8
Identities = 5/32 (15%), Positives = 17/32 (53%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
+ + + K+ +K+++ ++K ++ K K
Sbjct: 293 LHNFRNMFLQAVKENQKRRETEEKMRRAKLAK 324
Score = 26.5 bits (58), Expect = 8.6
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+ K+ +K+++ ++K ++ K + A K
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEK 329
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 29.3 bits (65), Expect = 0.60
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 322 LIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
I +G + ++F + A K+ I + +
Sbjct: 27 AIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV---SVIPTNGDVVVV 83
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEA--QRLGRILRAKKGAI 426
+ T F +V+ +S G + + QR GR R K G
Sbjct: 84 ATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPGIY 130
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.1 bits (68), Expect = 0.63
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
F + K + + +K+ K++K K K++ +K
Sbjct: 102 FTQMSQYFKAQTEARKQMSKEEKLKIKEENEKL 134
Score = 28.1 bits (63), Expect = 2.2
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
+ + +K+ K++K K K++ +K +
Sbjct: 112 QTEARKQMSKEEKLKIKEENEKLLKE 137
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 29.9 bits (67), Expect = 0.75
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 18/120 (15%)
Query: 322 LIAYHERRGDKTIVFSDNVFALKHYAVKMNKP-----YIYGPTSQSERIQ---------- 366
I +G + ++F + A K+ Y S
Sbjct: 28 AIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATD 87
Query: 367 ILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEA--QRLGRILRAKKG 424
L +++ T + I + + + QR GR R K G
Sbjct: 88 ALMTGFTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPG 146
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus
thermophilus [TaxId: 274]}
Length = 344
Score = 29.2 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 384 KVAD---TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFY 435
KV D T+F LP + +L+ +++ G R L A + A+AE Y +
Sbjct: 291 KVVDALFTNFHLPRSTLLMLVAAFLGRER--------TLEAYRLAVAEGYRFYSL 337
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 28.6 bits (63), Expect = 1.6
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 18/131 (13%)
Query: 75 WSTADDSMICRFTSEAKDKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLL 134
++ + IC+F+ K+ ++ ++ ++ L +L
Sbjct: 45 FTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNI-PILA 103
Query: 135 DDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
D + V K++ V YR ++ P R + V PV
Sbjct: 104 DKTKCIMKSYGVLKEEDGVA--------YRGLFIIDPKQNLRQITVNDL---------PV 146
Query: 195 YRHAHDFLIAI 205
R + L +
Sbjct: 147 GRDVDEALRLV 157
>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 27.8 bits (62), Expect = 1.8
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 187 FLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
F E F + + + + + EH+
Sbjct: 69 FFEKFHGDQECYYQDDLRVLSSLTKKEHMKG 99
>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces
cerevisiae [TaxId: 4932]}
Length = 134
Score = 27.8 bits (62), Expect = 1.8
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 187 FLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
F + FSP ++ H I V +HI E A F+
Sbjct: 52 FFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEV--ASAFQS 91
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 27.0 bits (60), Expect = 1.8
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 DVISGCKKKK-KKKKKKKKKKKKKKKKKKKKRPS 37
D+ G ++ KKK ++ + K+K K + P+
Sbjct: 62 DIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPT 95
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 27.2 bits (60), Expect = 1.9
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAG 39
+ ++++++ ++K PS+G
Sbjct: 82 LESLPEEEQQRVLGEEKMLNISGPSSG 108
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 28.5 bits (63), Expect = 2.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK++ K+ K+ ++ +K K S KS
Sbjct: 247 ISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKS 278
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 28.5 bits (63), Expect = 2.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKK 29
+V+S C++K+K K KKK +
Sbjct: 2 EVLSNCREKRKGMKWDCKKKNDRSN 26
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 27.1 bits (60), Expect = 2.3
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKK 34
G K+ + + K+ +K++
Sbjct: 75 HGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.3 bits (58), Expect = 3.5
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKR 35
K+ + + K+ +KR
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKR 100
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 27.0 bits (60), Expect = 2.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKKK 33
++ +K + +++K+++KK KKKKKK
Sbjct: 75 TKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 25.5 bits (56), Expect = 8.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKK 34
+K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 27.4 bits (60), Expect = 3.1
Identities = 3/27 (11%), Positives = 13/27 (48%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKK 29
F + + K++ + + + + +K+
Sbjct: 155 FFERLPKPKREAFLEANRAELVRFQKE 181
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 26.5 bits (58), Expect = 3.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRP 36
K ++ K +K KRP
Sbjct: 2 SSGSSGKPSQEGGKGGSEKPKRP 24
Score = 26.1 bits (57), Expect = 3.8
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSA 38
K ++ K +K K+ SA
Sbjct: 2 SSGSSGKPSQEGGKGGSEKPKRPVSA 27
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 26.8 bits (59), Expect = 3.3
Identities = 9/61 (14%), Positives = 23/61 (37%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF 72
KK + ++ + ++K ++ R ++ + A + VL + + Q
Sbjct: 1 KKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQL 60
Query: 73 K 73
K
Sbjct: 61 K 61
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 27.3 bits (59), Expect = 3.5
Identities = 17/172 (9%), Positives = 49/172 (28%), Gaps = 16/172 (9%)
Query: 307 LLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKP-----YIYGPTSQ 361
+ Y++ Q + E+RG I++ ++ ++ A ++ +
Sbjct: 7 IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLEN 66
Query: 362 SERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRA 421
+ R + + F+ + + + + P ++ + + +
Sbjct: 67 NVRADVQEKFQ-RDDLQIVVATVAFGMGINKPNVRFVVHFDIP--------RNIESYYQE 117
Query: 422 KKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEE 473
A + A +M++ R+ KL M
Sbjct: 118 TGRAGRDGLPAEAMLFYDP--ADMAWLRRCLEEKPQGQLQDIERHKLNAMGA 167
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.3 bits (60), Expect = 4.7
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+ +K++ K K+ + ++ + +S
Sbjct: 210 NAHNVTVDLEMRKQRNKTTKQVRTIEKITPIES 242
Score = 27.3 bits (60), Expect = 5.1
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K + +K++ K K+ R
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRT 233
Score = 26.9 bits (59), Expect = 6.5
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
D GC+ K + +K++ K
Sbjct: 198 DHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQV 231
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.5 bits (56), Expect = 5.1
Identities = 4/20 (20%), Positives = 5/20 (25%)
Query: 17 KKKKKKKKKKKKKKKKKKRP 36
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGTLE 21
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 11 KKKKKKKKKKKKKKKKKK 28
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 12 KKKKKKKKKKKKKKKKKK 29
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 13 KKKKKKKKKKKKKKKKKK 30
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 14 KKKKKKKKKKKKKKKKKK 31
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 15 KKKKKKKKKKKKKKKKKK 32
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.1
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 16 KKKKKKKKKKKKKKKKKK 33
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia
coli [TaxId: 562]}
Length = 108
Score = 26.0 bits (57), Expect = 6.3
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 366 QILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425
ILQ +P++ + + S DL A V ++ + + L+ G
Sbjct: 21 LILQREIKDPRLGMMTTVSGVEMSRDLAYAKV--YVTFLNDKDEDAVKAGIKALQEASGF 78
Query: 426 I 426
I
Sbjct: 79 I 79
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 26.9 bits (59), Expect = 7.4
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKK 34
+ K++ K +K K
Sbjct: 186 MSELPKEQGKLNEKCASKLYYNNMA 210
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 27.0 bits (59), Expect = 7.6
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 7/40 (17%)
Query: 90 AKDKPMGCGILVTTY-------SMISHTQKRSWEADQTMQ 122
AK + G + T ++++H R
Sbjct: 136 AKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATS 175
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 25.8 bits (57), Expect = 8.6
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
S + ++++KK+ +K +K K
Sbjct: 56 GNSRGRARERQKKRAYGHQKGAGSRKGKA 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,070,017
Number of extensions: 99191
Number of successful extensions: 1135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 812
Number of HSP's successfully gapped: 118
Length of query: 552
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 462
Effective length of database: 1,171,896
Effective search space: 541415952
Effective search space used: 541415952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)