BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11641
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 60 WLKVFKQIRSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPN 119
W+ FK + SP +D GDIS ++ LR KL CK FSW+++++ D ++P +
Sbjct: 286 WMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPD-----SQIPRH 340
Query: 120 LF-WGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADK 178
F GE +N+ T +CLD+M R +G CHG G +Q+F A ++ + C+D K
Sbjct: 341 YFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSK 400
Query: 179 QEKLVEMLK 187
V MLK
Sbjct: 401 LNGPVTMLK 409
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADK 42
M R +G CHG G +Q+F A ++ + C+D K
Sbjct: 359 MARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSK 400
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 30/217 (13%)
Query: 60 WLKVFKQIRSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPEL-PP 118
W+ + + P L GD++ Q LR L+CK F WFM +A+D+ +P + PP
Sbjct: 364 WMDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPP 423
Query: 119 NLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYC-HGSGSS-----QLFRLNAEGQLGHGER 172
WGE +N+GT C D+ + + C G G + Q+F + G
Sbjct: 424 AAAWGEIRNVGTGLCADTKHGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPG-- 481
Query: 173 CVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTR 232
D +K FC A + + L++C + G + W++ +
Sbjct: 482 --DPQHTKK----------FCFDA------ISHTSPVTLYDCHSMKG--NQLWKYRKD-K 520
Query: 233 QLEHAILKRCLSVHPETNQLAMLRCDENNSYQQWRFK 269
L H + C+ +++ M C+ ++ QQW F+
Sbjct: 521 TLYHPVSGSCMDCSESDHRIFMNTCNPSSLTQQWLFE 557
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 55 RKRSSWLKVFKQIRSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFP 114
R W+ +K P A + G+I ++ LR KL CK F W++++V +P
Sbjct: 313 RAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENV-------YP 365
Query: 115 ELP----PNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHG 170
EL ++ +G A GT CLD++G A V+G CH +G +Q + L E + H
Sbjct: 366 ELRVPDHQDIAFG-ALQQGTN-CLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHM 423
Query: 171 ERCV 174
+ C+
Sbjct: 424 DLCL 427
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERC---VDADKQVISTQKSSLELRKR 57
+G A V+G CH +G +Q + L E + H + C VD + + E R
Sbjct: 390 LGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSR 449
Query: 58 SSWLKV--FKQIRSLGSPLAM 76
W ++ ++R +GS L +
Sbjct: 450 QKWEQIEGNSKLRHVGSNLCL 470
>pdb|3QBO|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Yersinia Pestis Co92
pdb|3QBO|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Yersinia Pestis Co92
Length = 364
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 174 VDADKQEKLVEMLKLPVTFCVL---AGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNS 230
V + ++ L ++L +P + VL G + F LNL NS+ VDG + H++
Sbjct: 52 VAEESEKDLRDLLNVPANYKVLFCHGGARAQFA--AVPLNLLGDRNSADYVDGGYWAHSA 109
Query: 231 TRQLEHAILKRCLSVHPETNQLAMLRCDENNSYQQWRFKE 270
++ + + V N L ++ +QW+ +
Sbjct: 110 IKEAQKYCTPNVIDVTTHDNGLTGIQ-----PMKQWKLSD 144
>pdb|1QXM|A Chain A, Crystal Structure Of A Hemagglutinin Component (Ha1) From
Type C Clostridium Botulinum
pdb|1QXM|B Chain B, Crystal Structure Of A Hemagglutinin Component (Ha1) From
Type C Clostridium Botulinum
Length = 300
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 193 CVLAGVKLIFCRLGTVLN--LFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPETN 250
C+ + C+L T LN F N + + W++ +S+RQ + + + ET
Sbjct: 156 CIYEALNNRNCKLQTQLNSDRFLSKNLNSQIIVLWQWFDSSRQ-------KWIIEYNETK 208
Query: 251 QLAMLRCDENNSYQQW 266
L+C ENN Y W
Sbjct: 209 SAYTLKCQENNRYLTW 224
>pdb|3AH1|A Chain A, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple N-Acetylneuramic Acid
pdb|3AH1|B Chain B, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple N-Acetylneuramic Acid
pdb|3AH2|A Chain A, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple N-Acetylgalactosamine
pdb|3AH2|B Chain B, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple N-Acetylgalactosamine
pdb|3AH4|A Chain A, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple Galactose
pdb|3AH4|B Chain B, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple Galactose
Length = 288
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 193 CVLAGVKLIFCRLGTVLN--LFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPETN 250
C+ + C+L T LN F N + + W++ +S+RQ + + + ET
Sbjct: 144 CIYEALNNRNCKLQTQLNSDRFLSKNLNSQIIVLWQWFDSSRQ-------KWIIEYNETK 196
Query: 251 QLAMLRCDENNSYQQW 266
L+C ENN Y W
Sbjct: 197 SAYTLKCQENNRYLTW 212
>pdb|3AJ5|A Chain A, Ha1 (Ha33) Subcomponent Of Botulinum Type C Progenitor
Toxin Complexed With N-Acetylgalactosamine, Bound At
Site Ii
pdb|3AJ5|B Chain B, Ha1 (Ha33) Subcomponent Of Botulinum Type C Progenitor
Toxin Complexed With N-Acetylgalactosamine, Bound At
Site Ii
Length = 286
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 193 CVLAGVKLIFCRLGTVLN--LFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPETN 250
C+ + C+L T LN F N + + W++ +S+RQ + + + ET
Sbjct: 142 CIYEALNNRNCKLQTQLNSDRFLSKNLNSQIIVLWQWFDSSRQ-------KWIIEYNETK 194
Query: 251 QLAMLRCDENNSYQQW 266
L+C ENN Y W
Sbjct: 195 SAYTLKCQENNRYLTW 210
>pdb|3AJ6|A Chain A, Ha1 (Ha33) Mutant F179i Of Botulinum Type C Progenitor
Toxin Complexed With N-Acetylgalactosamine, Bound At
Site Ii
pdb|3AJ6|B Chain B, Ha1 (Ha33) Mutant F179i Of Botulinum Type C Progenitor
Toxin Complexed With N-Acetylgalactosamine, Bound At
Site Ii
Length = 286
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 193 CVLAGVKLIFCRLGTVLN--LFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPETN 250
C+ + C+L T LN F N + + W++ +S+RQ + + + ET
Sbjct: 142 CIYEALNNRNCKLQTQLNSDRFLSKNLNSQIIVLWQWIDSSRQ-------KWIIEYNETK 194
Query: 251 QLAMLRCDENNSYQQW 266
L+C ENN Y W
Sbjct: 195 SAYTLKCQENNRYLTW 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,385,949
Number of Sequences: 62578
Number of extensions: 323402
Number of successful extensions: 655
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 24
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)