Query psy11641
Match_columns 277
No_of_seqs 183 out of 1477
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 15:14:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3736|consensus 100.0 1.8E-56 4E-61 427.9 15.6 226 8-272 348-576 (578)
2 KOG3737|consensus 100.0 8.6E-53 1.9E-57 378.7 8.7 231 8-273 366-602 (603)
3 KOG3738|consensus 100.0 1.6E-52 3.5E-57 377.4 6.4 225 8-270 326-555 (559)
4 PF00652 Ricin_B_lectin: Ricin 99.7 2.3E-17 5.1E-22 129.2 9.6 117 121-266 1-124 (124)
5 cd00161 RICIN Ricin-type beta- 99.7 1.6E-16 3.4E-21 123.6 11.0 117 124-268 2-124 (124)
6 smart00458 RICIN Ricin-type be 99.6 1.5E-15 3.3E-20 117.9 10.4 110 129-269 5-117 (117)
7 cd02510 pp-GalNAc-T pp-GalNAc- 99.5 1.1E-14 2.4E-19 131.8 1.3 92 9-105 205-298 (299)
8 cd00161 RICIN Ricin-type beta- 99.1 1.8E-09 4E-14 83.4 10.4 55 125-179 46-102 (124)
9 PF00652 Ricin_B_lectin: Ricin 98.9 4.8E-09 1E-13 81.8 8.3 47 132-178 56-104 (124)
10 smart00458 RICIN Ricin-type be 98.8 3.3E-08 7.2E-13 76.4 10.5 55 123-179 39-95 (117)
11 KOG3737|consensus 98.8 5.1E-09 1.1E-13 96.0 5.5 103 1-163 496-599 (603)
12 PF14200 RicinB_lectin_2: Rici 98.8 1.7E-08 3.6E-13 77.6 6.2 89 156-269 2-105 (105)
13 KOG3736|consensus 98.5 2.1E-07 4.5E-12 90.7 8.0 66 132-229 507-574 (578)
14 PF14200 RicinB_lectin_2: Rici 98.4 9.5E-07 2.1E-11 67.8 6.1 82 121-228 15-105 (105)
15 KOG3738|consensus 97.3 0.00011 2.4E-09 68.2 1.9 79 164-269 434-514 (559)
16 PF03498 CDtoxinA: Cytolethal 94.9 0.064 1.4E-06 43.9 5.6 52 220-271 82-144 (150)
17 PLN02899 alpha-galactosidase 82.3 0.78 1.7E-05 45.6 1.9 25 222-247 516-540 (633)
18 PF07598 DUF1561: Protein of u 76.7 6.4 0.00014 38.7 6.0 62 117-179 34-99 (632)
19 PF03498 CDtoxinA: Cytolethal 74.4 2.5 5.5E-05 34.6 2.4 38 233-271 55-92 (150)
20 PLN02899 alpha-galactosidase 64.1 5.7 0.00012 39.7 2.8 50 129-179 485-541 (633)
21 PF03002 Somatostatin: Somatos 32.2 14 0.00031 18.8 -0.1 10 91-100 3-12 (18)
No 1
>KOG3736|consensus
Probab=100.00 E-value=1.8e-56 Score=427.95 Aligned_cols=226 Identities=26% Similarity=0.508 Sum_probs=197.2
Q ss_pred eeEEEeccCCCCceeEEeccCCeeEEEEeeccccccccc-hhhccccceEEEeeccchhhHhhcCCCccccCCCCChHHH
Q psy11641 8 VIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQVIS-TQKSSLELRKRSSWLKVFKQIRSLGSPLAMFLDMGDISEQ 86 (277)
Q Consensus 8 ~v~l~~C~g~~~nq~~~~~~~s~vgh~~rc~~~~~~~~~-~~~~~N~~R~aevWmDeyk~~~y~~~p~~~~~~~gdis~r 86 (277)
.+++|+|||+ +++.||||||||||..+||.++.+ ..+.+|++|+|||||||||++||.++|.++.+|+||||+|
T Consensus 348 SfrvWqCGG~-----lei~PCSrVGHifRk~~pY~~p~~~~~~~~N~~RlAeVWmDeyK~~~y~~~P~~~~~d~GDvseR 422 (578)
T KOG3736|consen 348 SFRVWQCGGR-----LEIVPCSRVGHIFRKRKPYTFPDGTDTATRNLKRLAEVWMDEYKEQFYKRMPGLRNIDEGDLTER 422 (578)
T ss_pred eEEEeccCCe-----EEecCccceeeeeecCCCccCCCcchhhhhchhhhhhhhhHHHHHHHHhhCccccccCCCCchhH
Confidence 3578999998 899999999999999999999765 5568999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcCcchhhhhccccccccCCCCCCCCceeeEEecCccccccccCC--CCCceEEEEecCCCCCcceEEECCC
Q psy11641 87 VALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNLGTQKCLDSMGR--TAPAVIGTSYCHGSGSSQLFRLNAE 164 (277)
Q Consensus 87 ~~LR~~l~CksF~Wyl~nv~p~~~~~~p~~~~~~~~G~Irn~~s~~CLd~~~~--~~g~~v~l~~C~~~~~~Q~W~~t~~ 164 (277)
++||++|+||||+|||+|||||++. |.. ...+.|+|+|..++.|+|.... ..|.++++++||+.+.+|.|.||..
T Consensus 423 ~~LR~~L~CKsFkWyL~nVyPel~~--~~~-~~~~~G~i~~~~~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~ 499 (578)
T KOG3736|consen 423 KALRERLNCKSFKWYLENVYPELYL--PTP-HVYASGEIRNGNPNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTKQ 499 (578)
T ss_pred HHHHHhcCCccccchHhhcCccccC--CCC-cccccceeccCCcchhhhhhchhccCCCcceEecCCCccccccccccCC
Confidence 9999999999999999999999973 332 2368899999889999999863 2357999999999989999999999
Q ss_pred CccccCCcceeecCCchhhhhhcccceeeecccEEEEeecCCCceeeeeccCCCCCCCCceEEeCCCCceeeCccCccce
Q psy11641 165 GQLGHGERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLS 244 (277)
Q Consensus 165 g~ir~~~~CLd~~~~~~~~~~~~~p~~~~~~~~v~l~~C~~~~~~~~~~C~~~~~~~~Q~W~~~~~~~~l~~~~s~~CLd 244 (277)
++||.+..||++... ..|+ +++||..+ +|.|.|+.+ ++|+|..||+||+
T Consensus 500 ~eir~~~~cl~~~~~----------------~~v~-----------l~~C~~~~---~q~w~~~~~-~~i~~~~sg~CL~ 548 (578)
T KOG3736|consen 500 GEIRIGDLCLDVDDA----------------GKVT-----------LYDCHKMG---NQLWHYDKD-GTLYHRNSGKCLE 548 (578)
T ss_pred cceEECCEEeccccC----------------CceE-----------EEeccccc---ccceEEcCC-CceEcCCCCcccc
Confidence 999999999998521 1244 45554444 789999985 9999999999999
Q ss_pred eecCCCceEEecCCCCCCCCceEEeeeC
Q psy11641 245 VHPETNQLAMLRCDENNSYQQWRFKEVR 272 (277)
Q Consensus 245 ~~~~~~~v~l~~C~~~~~~Q~W~~~~~~ 272 (277)
+......+.+..|+.+++.|+|.|.+++
T Consensus 549 ~~~~~~~~~l~~c~~~~~~Q~W~~~~~~ 576 (578)
T KOG3736|consen 549 AAVDKNGLILVACDPSDPTQQWLFEHVN 576 (578)
T ss_pred ccCCCCCceEeecCCCCCcceEEEEecC
Confidence 9865445999999998889999999876
No 2
>KOG3737|consensus
Probab=100.00 E-value=8.6e-53 Score=378.68 Aligned_cols=231 Identities=36% Similarity=0.675 Sum_probs=213.6
Q ss_pred eeEEEeccCCCCceeEEeccCCeeEEEEeeccccccc--c---c-hhhccccceEEEeeccchhhHhhcCCCccccCCCC
Q psy11641 8 VIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQV--I---S-TQKSSLELRKRSSWLKVFKQIRSLGSPLAMFLDMG 81 (277)
Q Consensus 8 ~v~l~~C~g~~~nq~~~~~~~s~vgh~~rc~~~~~~~--~---~-~~~~~N~~R~aevWmDeyk~~~y~~~p~~~~~~~g 81 (277)
...||+|+|. +.+.|||||||++|.+-||.+. . + .....|.+|+.|+||||||++||.+.|.++.+++|
T Consensus 366 SfKIWQCGG~-----i~fVPCSrVGHvYR~~mpy~fgk~~~k~~~p~i~iNy~RVvetW~Ddyk~YfytreP~a~~l~~G 440 (603)
T KOG3737|consen 366 SFKIWQCGGK-----ILFVPCSRVGHVYRSLMPYQFGKPPIKVGSPPILINYVRVVETWWDDYKDYFYTREPEAQALPYG 440 (603)
T ss_pred EEEEEeeCCE-----EEEEEccccchhhhccccccCCCCccccCCCceEeehhhHHHHHHHhhhhheeecChhhccCCcc
Confidence 3578999998 9999999999999999998664 1 1 23469999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCCcCcchhhhhccccccccCCCCCCCCceeeEEecCccccccccCCCCCceEEEEecCCCCCcceEEE
Q psy11641 82 DISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRL 161 (277)
Q Consensus 82 dis~r~~LR~~l~CksF~Wyl~nv~p~~~~~~p~~~~~~~~G~Irn~~s~~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~ 161 (277)
|||++++||++|+||||+|||++|+.|+..+||.+|+..-||+||+.+++.|||+++..+|+.+++-+||+.++||.+++
T Consensus 441 DISeqlalr~~lnCkSFkWfMe~iAYDv~~~yP~lP~N~~WGE~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL~Rl 520 (603)
T KOG3737|consen 441 DISEQLALREDLNCKSFKWFMEEIAYDVTSHYPLLPKNVDWGEIRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRL 520 (603)
T ss_pred cHHHHHHhHhhcCCchhHHHHHHHHHHHHhcCCCCCCCCcchhccCcccchhHHhcCCCCCCccccccccCCCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCcceeecCCchhhhhhcccceeeecccEEEEeecCCCceeeeeccCCCCCCCCceEEeCCCCceeeCccCc
Q psy11641 162 NAEGQLGHGERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKR 241 (277)
Q Consensus 162 t~~g~ir~~~~CLd~~~~~~~~~~~~~p~~~~~~~~v~l~~C~~~~~~~~~~C~~~~~~~~Q~W~~~~~~~~l~~~~s~~ 241 (277)
+..|++..++.||++++. +|++..|+-+ ..+-.|.|+.++.+|.|..+++
T Consensus 521 N~agQl~qge~CltAdg~-----------------~i~~~hC~lg-------------tv~g~WqY~~~tk~~~H~~~~k 570 (603)
T KOG3737|consen 521 NEAGQLMQGEQCLTADGS-----------------KIMITHCNLG-------------TVKGEWQYFKNTKRFTHIPSGK 570 (603)
T ss_pred ccccchhccceeeecCCc-----------------eEEEEEeecc-------------cccCceehhhcchheeeccccc
Confidence 999999999999998764 7999999877 2355899998889999999999
Q ss_pred cceeecCCCceEEecCCCCCCCCceEEeeeCC
Q psy11641 242 CLSVHPETNQLAMLRCDENNSYQQWRFKEVRP 273 (277)
Q Consensus 242 CLd~~~~~~~v~l~~C~~~~~~Q~W~~~~~~~ 273 (277)
||++.+...+|.+..|+.++..|+|.|.+..|
T Consensus 571 C~~~se~~~qv~l~~Cd~~~~~Qkw~~kei~~ 602 (603)
T KOG3737|consen 571 CLDRSEVLHQVFLSNCDSSKTTQKWEMKEIHS 602 (603)
T ss_pred cccccchhheeeecccCCCchhheeehhhccc
Confidence 99999888999999999999999999988765
No 3
>KOG3738|consensus
Probab=100.00 E-value=1.6e-52 Score=377.44 Aligned_cols=225 Identities=24% Similarity=0.403 Sum_probs=193.1
Q ss_pred eeEEEeccCCCCceeEEeccCCeeEEEEeeccccccccchh--hccccceEEEeeccchhhHhhcCCCccccCCCCChHH
Q psy11641 8 VIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQVISTQ--KSSLELRKRSSWLKVFKQIRSLGSPLAMFLDMGDISE 85 (277)
Q Consensus 8 ~v~l~~C~g~~~nq~~~~~~~s~vgh~~rc~~~~~~~~~~~--~~~N~~R~aevWmDeyk~~~y~~~p~~~~~~~gdis~ 85 (277)
.+++|.|||+ .+|.|||||||+||..|||.++.|+. ..+|++|+|||||||||++||..+|.++.+.+|++.+
T Consensus 326 sfrvW~CGGs-----lEIvPCSRVGHVFRkrHpy~FP~gs~~ty~~NTkr~AEvWmDEYK~~yyaarPsAr~vpfg~i~~ 400 (559)
T KOG3738|consen 326 SFRVWQCGGS-----LEIVPCSRVGHVFRKRHPYTFPGGSGNTYIKNTKRAAEVWMDEYKNYYYAARPSARRVPFGNIYD 400 (559)
T ss_pred EEEEEeeCCe-----eEEEeccchhhhhhccCCCcCCCCCCcchhhcchHHHHHHHHHHHHHHHhcCchhhcCCCccHHH
Confidence 4788999999 99999999999999999999987653 3699999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcCcchhhhhccccccccCCCCCCCCceeeEEecCccccccccCCCCCceEEEEecCCCCCcceEEE--CC
Q psy11641 86 QVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRL--NA 163 (277)
Q Consensus 86 r~~LR~~l~CksF~Wyl~nv~p~~~~~~p~~~~~~~~G~Irn~~s~~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~--t~ 163 (277)
|++||++|+||||+|||+|||||+.. |. ....+.|.|++ ...|||+.+....+.++++.||+.+++|+|.+ ++
T Consensus 401 rL~~Rk~l~CksFkWYLenVyPeL~i--p~-~~~~~~g~lrq--g~~Cl~s~~~~~~~~~gl~~C~~s~~nqqwa~~~t~ 475 (559)
T KOG3738|consen 401 RLELRKKLRCKSFKWYLENVYPELRI--PF-KELIATGTLRQ--GDNCLDSQGQNSQEALGLASCHGSGGNQQWAFLRTS 475 (559)
T ss_pred HHHHHhhcCCcchhhhhhhcCcceec--cc-cccccccchhc--cchhhhhhhcccccCcceeecccCCCCcchhhhhhh
Confidence 99999999999999999999999873 32 12467899998 67999999876666789999999988999999 66
Q ss_pred CCccccCCcceeecCCchhhhhhcccceeeecccEEEEeecCCCceeeeeccCCCCCCCCceEEeCCCCceeeCccCccc
Q psy11641 164 EGQLGHGERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCL 243 (277)
Q Consensus 164 ~g~ir~~~~CLd~~~~~~~~~~~~~p~~~~~~~~v~l~~C~~~~~~~~~~C~~~~~~~~Q~W~~~~~~~~l~~~~s~~CL 243 (277)
+..+.+.++||++... .+|+.|.|+.|.++ . ..|.|.-. ++.|.|..+++||
T Consensus 476 ~~~~~~~elCL~v~~~-------------~pg~~v~l~~C~~~-----------e--~~q~~v~~--~~~l~h~~s~KOG 527 (559)
T KOG3738|consen 476 TQLITHRELCLAVGSN-------------TPGSPVALVPCGNN-----------E--TKQRWVEL--GGHLLHAGSHLCL 527 (559)
T ss_pred hhHHHHHhhhheeecC-------------CCCCeEEEEecCCC-----------C--CceEEEec--CCchhccccccee
Confidence 6677788999999764 24678888888776 2 25677653 7899999999999
Q ss_pred eeecCC-CceEEecCCCCCCCCceEEee
Q psy11641 244 SVHPET-NQLAMLRCDENNSYQQWRFKE 270 (277)
Q Consensus 244 d~~~~~-~~v~l~~C~~~~~~Q~W~~~~ 270 (277)
|....+ ..+.+.+|.....+|+|.|..
T Consensus 528 d~~~~g~~~l~~~~C~~~~~sQ~w~f~~ 555 (559)
T KOG3738|consen 528 DNPLKGRWLLEVSTCESHLVSQSWQFAL 555 (559)
T ss_pred ccccCCCcceeecccccccccceeeeeh
Confidence 986433 458899999987899999974
No 4
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=99.72 E-value=2.3e-17 Score=129.24 Aligned_cols=117 Identities=26% Similarity=0.513 Sum_probs=90.7
Q ss_pred ceeeEEecC-ccccccccC-CCCCceEEEEecCCCCCcceEEECCCCccccC---CcceeecCCchhhhhhcccceeeec
Q psy11641 121 FWGEAKNLG-TQKCLDSMG-RTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHG---ERCVDADKQEKLVEMLKLPVTFCVL 195 (277)
Q Consensus 121 ~~G~Irn~~-s~~CLd~~~-~~~g~~v~l~~C~~~~~~Q~W~~t~~g~ir~~---~~CLd~~~~~~~~~~~~~p~~~~~~ 195 (277)
|+|.|++.. +++|||+.+ ...++++++++|++ ..+|.|.|+.++.|+.. .+||++.... ++
T Consensus 1 ~~g~i~~~~~~~~cl~~~~~~~~~~~v~l~~c~~-~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~-------------~~ 66 (124)
T PF00652_consen 1 ASGYIRNVNKSGLCLDVQGSTKNGSPVVLYPCDG-SDNQLWRFDPDGQIRSNNNPNLCLDVDGSS-------------PG 66 (124)
T ss_dssp EEEEEEEEEGGGEEEEEGGSSSTTTBEEEEE--S-SGGGEEEEETTSBEEETTETTEEEEESSSS-------------TT
T ss_pred CceEEEEeeCCCCeEEEcCCCCCCCEEEEEECCC-CCceeEEEcCCCceeeccCcceEEEeeccC-------------CC
Confidence 578999977 999999982 34689999999999 46899999999999864 3599998752 12
Q ss_pred ccEEEEeecCCCceeeeeccCCCCCCCCceEEeCCCCceeeCccCccceeec--CCCceEEecCCCCCCCCce
Q psy11641 196 AGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHP--ETNQLAMLRCDENNSYQQW 266 (277)
Q Consensus 196 ~~v~l~~C~~~~~~~~~~C~~~~~~~~Q~W~~~~~~~~l~~~~s~~CLd~~~--~~~~v~l~~C~~~~~~Q~W 266 (277)
+.|.|.+|+.. . .+|+|.++. +++|++..+++||++.. ++..|++.+|++ +++|+|
T Consensus 67 ~~i~l~~C~~~-----------~--~~Q~W~~~~-~~~i~n~~s~~cL~~~~~~~~~~l~~~~c~~-~~~Q~W 124 (124)
T PF00652_consen 67 TKIVLWPCDSN-----------S--SNQRWKFDP-DGRIRNKNSGLCLDVKGGSDGNPLVLWPCNG-SPNQQW 124 (124)
T ss_dssp EBEEEEETTTT-----------G--GGGBEEEET-TSBEEETTTTEEEEEGGGSTTEBEEEEE-TS-SGGGBE
T ss_pred ceEEEeeccCC-----------c--cCCeEEEcC-CeeEEeCCCCEEEEecCCCCCCEEEEEECCC-CccccC
Confidence 34555555443 3 368999997 89999999999999986 578899999955 699999
No 5
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=99.70 E-value=1.6e-16 Score=123.59 Aligned_cols=117 Identities=26% Similarity=0.584 Sum_probs=91.5
Q ss_pred eEEecC-ccccccccCCCCCceEEEEecCCCCCcceEEECCCCccccC--CcceeecCCchhhhhhcccceeeecccEEE
Q psy11641 124 EAKNLG-TQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHG--ERCVDADKQEKLVEMLKLPVTFCVLAGVKL 200 (277)
Q Consensus 124 ~Irn~~-s~~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~g~ir~~--~~CLd~~~~~~~~~~~~~p~~~~~~~~v~l 200 (277)
.|++.. +++|||+.+...+..+.+++|++...+|.|.|+.+|.|+.. ++||++....
T Consensus 2 ~~~~~~~~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~-------------------- 61 (124)
T cd00161 2 TIRNVNNTGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDA-------------------- 61 (124)
T ss_pred eeEeCCCCCeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCC--------------------
Confidence 466666 89999998644578999999998756999999999998865 8999986541
Q ss_pred EeecCCCceeeeeccCCCCCCCCceEEeCCCCceeeCccCccceeecC---CCceEEecCCCCCCCCceEE
Q psy11641 201 IFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPE---TNQLAMLRCDENNSYQQWRF 268 (277)
Q Consensus 201 ~~C~~~~~~~~~~C~~~~~~~~Q~W~~~~~~~~l~~~~s~~CLd~~~~---~~~v~l~~C~~~~~~Q~W~~ 268 (277)
.+.++.++.|+... .+|+|.+.. ++.|++..+++||++... +..|.+.+|+.+ .+|+|.|
T Consensus 62 ----~~~~~~~~~c~~~~--~~Q~W~~~~-~~~i~~~~~~~cl~~~~~~~~~~~v~~~~c~~~-~~Q~W~~ 124 (124)
T cd00161 62 ----PGSKVRLYTCSGGS--DNQRWTFNK-DGTIRNLKSGKCLDVKGGNTNGTNLILWTCDGG-PNQKWKF 124 (124)
T ss_pred ----CCCEEEEEECCCCC--cCCEEEECC-CcEEEECCCCeEEeCCCCCCCCCEEEEEeCCCC-ccceEeC
Confidence 12344455555422 378999986 589999999999999754 467999999986 8999986
No 6
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=99.64 E-value=1.5e-15 Score=117.94 Aligned_cols=110 Identities=26% Similarity=0.627 Sum_probs=86.3
Q ss_pred CccccccccCCCCCceEEEEecCCCCCcceEEECCCCcccc-CCcceeecCCchhhhhhcccceeeecccEEEEeecCCC
Q psy11641 129 GTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGH-GERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGT 207 (277)
Q Consensus 129 ~s~~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~g~ir~-~~~CLd~~~~~~~~~~~~~p~~~~~~~~v~l~~C~~~~ 207 (277)
.+++|||+.+. +..+.+++|++...+|.|.|+.+|.|+. .++||++.... ..
T Consensus 5 ~~~~Cl~~~~~--~~~v~l~~c~~~~~~Q~w~~~~~g~~~~~~~~Cl~~~~~~-------------------------~~ 57 (117)
T smart00458 5 NTGKCLDVNGN--SNPVGLFDCHGTGGNQLWKLTSDGAIRIATDLCLTANGNT-------------------------GS 57 (117)
T ss_pred cCCccEecCCC--CceEEEEeCCCCCccceEEEeCCCeEEecCCccCccCCCC-------------------------CC
Confidence 57899998753 2589999999855689999999999988 89999987541 02
Q ss_pred ceeeeeccCCCCCCCCceEEeCCCCceeeCccCccceeecCCC--ceEEecCCCCCCCCceEEe
Q psy11641 208 VLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPETN--QLAMLRCDENNSYQQWRFK 269 (277)
Q Consensus 208 ~~~~~~C~~~~~~~~Q~W~~~~~~~~l~~~~s~~CLd~~~~~~--~v~l~~C~~~~~~Q~W~~~ 269 (277)
++.++.|++.. .+|+|.+.. ++.|.+..+++|||+..... .+++.+|++. ++|+|.|+
T Consensus 58 ~v~l~~c~~~~--~~Q~W~~~~-~~~i~~~~~~~cl~~~~~~~~~~~~~~~c~~~-~~Q~W~~~ 117 (117)
T smart00458 58 TVTLYSCDGDA--DNQYWTVNK-DGTIRNPDSGLCLDVKDGNTGTKVILWTCNGN-PNQKWIFE 117 (117)
T ss_pred EEEEEECCCCC--cCCEEEECC-CeeEEeCCCCEEEecCCCCCCceEEEEeCCCC-ccccEEeC
Confidence 34555555532 278999987 78999999999999875433 7899999985 89999984
No 7
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.46 E-value=1.1e-14 Score=131.84 Aligned_cols=92 Identities=26% Similarity=0.425 Sum_probs=82.0
Q ss_pred eEEEeccCCCCceeEEeccCCeeEEEEe-eccccccccch-hhccccceEEEeeccchhhHhhcCCCccccCCCCChHHH
Q psy11641 9 IGTSYCHGSGSSQLFRLNAEGQLGHGER-CVDADKQVIST-QKSSLELRKRSSWLKVFKQIRSLGSPLAMFLDMGDISEQ 86 (277)
Q Consensus 9 v~l~~C~g~~~nq~~~~~~~s~vgh~~r-c~~~~~~~~~~-~~~~N~~R~aevWmDeyk~~~y~~~p~~~~~~~gdis~r 86 (277)
+++|.||+. +.+.|+++|.|+++ ...++..+.+. .+.+|..|.+++|||+++.++|.++|++..++.||+++|
T Consensus 205 ~R~~~~G~~-----i~~~p~a~v~H~~~~~~~~~~~~~~~~~~~~n~~r~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (299)
T cd02510 205 FKVWQCGGS-----IEIVPCSRVGHIFRRKRKPYTFPGGSGTVLRNYKRVAEVWMDEYKEYFYKARPELRNIDYGDLSER 279 (299)
T ss_pred HHHHHcCCe-----EEEeeccEEEEeccccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCHHHH
Confidence 467788776 77899999999998 67777666554 567999999999999999999999999988999999999
Q ss_pred HHHHhhcCCcCcchhhhhc
Q psy11641 87 VALRDKLHCKDFSWFMKHV 105 (277)
Q Consensus 87 ~~LR~~l~CksF~Wyl~nv 105 (277)
++++++|+||+|+||++.+
T Consensus 280 ~~~~~~~~~~~~~w~~~~~ 298 (299)
T cd02510 280 KALRERLKCKSFKWYLENV 298 (299)
T ss_pred HHHHHHcCCCCchHHHhhc
Confidence 9999999999999999876
No 8
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=99.05 E-value=1.8e-09 Score=83.44 Aligned_cols=55 Identities=20% Similarity=0.460 Sum_probs=43.2
Q ss_pred EEecCccccccccCCCCCceEEEEecCCCCCcceEEECCCCcccc--CCcceeecCC
Q psy11641 125 AKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGH--GERCVDADKQ 179 (277)
Q Consensus 125 Irn~~s~~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~g~ir~--~~~CLd~~~~ 179 (277)
|+...+++||++.+...+..+.+++|++...+|.|.+..++.|++ .++||++...
T Consensus 46 ~~~~~~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~ 102 (124)
T cd00161 46 IRIKSSNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDGTIRNLKSGKCLDVKGG 102 (124)
T ss_pred EEEcCCCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCCcEEEECCCCeEEeCCCC
Confidence 333336789998765457899999999855799999998888875 4899998764
No 9
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=98.92 E-value=4.8e-09 Score=81.78 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=39.5
Q ss_pred ccccccCCCCCceEEEEecCCCCCcceEEECCCCcccc--CCcceeecC
Q psy11641 132 KCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGH--GERCVDADK 178 (277)
Q Consensus 132 ~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~g~ir~--~~~CLd~~~ 178 (277)
+||++.+..++..+.+++|+....+|.|.|..++.|++ .++||++..
T Consensus 56 ~CL~~~~~~~~~~i~l~~C~~~~~~Q~W~~~~~~~i~n~~s~~cL~~~~ 104 (124)
T PF00652_consen 56 LCLDVDGSSPGTKIVLWPCDSNSSNQRWKFDPDGRIRNKNSGLCLDVKG 104 (124)
T ss_dssp EEEEESSSSTTEBEEEEETTTTGGGGBEEEETTSBEEETTTTEEEEEGG
T ss_pred eEEEeeccCCCceEEEeeccCCccCCeEEEcCCeeEEeCCCCEEEEecC
Confidence 49998765557889999999876669999999888886 489999976
No 10
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.85 E-value=3.3e-08 Score=76.37 Aligned_cols=55 Identities=24% Similarity=0.535 Sum_probs=42.4
Q ss_pred eeEEecCccccccccCCCCCceEEEEecCCCCCcceEEECCCCcccc--CCcceeecCC
Q psy11641 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGH--GERCVDADKQ 179 (277)
Q Consensus 123 G~Irn~~s~~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~g~ir~--~~~CLd~~~~ 179 (277)
|.|++. +++|||+.+... ..+.++.|++...+|.|.+...+.|++ .++|||+...
T Consensus 39 g~~~~~-~~~Cl~~~~~~~-~~v~l~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~ 95 (117)
T smart00458 39 GAIRIA-TDLCLTANGNTG-STVTLYSCDGDADNQYWTVNKDGTIRNPDSGLCLDVKDG 95 (117)
T ss_pred CeEEec-CCccCccCCCCC-CEEEEEECCCCCcCCEEEECCCeeEEeCCCCEEEecCCC
Confidence 444444 678999875322 689999999855799999999888875 6899998765
No 11
>KOG3737|consensus
Probab=98.81 E-value=5.1e-09 Score=96.02 Aligned_cols=103 Identities=33% Similarity=0.515 Sum_probs=77.8
Q ss_pred CCCCCCceeEEEeccCCCCceeEEeccCCeeEEEEeeccccccccchhhccccceEEEeeccchh-hHhhcCCCccccCC
Q psy11641 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQVISTQKSSLELRKRSSWLKVFK-QIRSLGSPLAMFLD 79 (277)
Q Consensus 1 ~g~~~g~~v~l~~C~g~~~nq~~~~~~~s~vgh~~rc~~~~~~~~~~~~~~N~~R~aevWmDeyk-~~~y~~~p~~~~~~ 79 (277)
||+++|+++++-.|||.|+||||+++..++++.-++|+++++..+- ++..=+-+++ +|-|.
T Consensus 496 MG~~p~g~mglt~CHg~GgNQL~RlN~agQl~qge~CltAdg~~i~---------~~hC~lgtv~g~WqY~--------- 557 (603)
T KOG3737|consen 496 MGKTPGGFMGLTPCHGMGGNQLFRLNEAGQLMQGEQCLTADGSKIM---------ITHCNLGTVKGEWQYF--------- 557 (603)
T ss_pred cCCCCCCccccccccCCCCceEEEeccccchhccceeeecCCceEE---------EEEeecccccCceehh---------
Confidence 8999999999999999999999999999999999999999887532 2333222222 12221
Q ss_pred CCChHHHHHHHhhcCCcCcchhhhhccccccccCCCCCCCCceeeEEecCccccccccCCCCCceEEEEecCCCCCcceE
Q psy11641 80 MGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLF 159 (277)
Q Consensus 80 ~gdis~r~~LR~~l~CksF~Wyl~nv~p~~~~~~p~~~~~~~~G~Irn~~s~~CLd~~~~~~g~~v~l~~C~~~~~~Q~W 159 (277)
+ ..-++.+..++.|||.. +.+..+.+..|......|+|
T Consensus 558 -----------------------~-----------------~tk~~~H~~~~kC~~~s--e~~~qv~l~~Cd~~~~~Qkw 595 (603)
T KOG3737|consen 558 -----------------------K-----------------NTKRFTHIPSGKCLDRS--EVLHQVFLSNCDSSKTTQKW 595 (603)
T ss_pred -----------------------h-----------------cchheeecccccccccc--chhheeeecccCCCchhhee
Confidence 1 12233455678999986 45788999999998889999
Q ss_pred EECC
Q psy11641 160 RLNA 163 (277)
Q Consensus 160 ~~t~ 163 (277)
.+..
T Consensus 596 ~~ke 599 (603)
T KOG3737|consen 596 EMKE 599 (603)
T ss_pred ehhh
Confidence 8753
No 12
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=98.76 E-value=1.7e-08 Score=77.59 Aligned_cols=89 Identities=15% Similarity=0.365 Sum_probs=63.9
Q ss_pred cceEEECC----CCc--ccc--CCcceeecCCchhhhhhcccceeeecccEEEEeecCCCceeeeeccCCCCCCCCceEE
Q psy11641 156 SQLFRLNA----EGQ--LGH--GERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRF 227 (277)
Q Consensus 156 ~Q~W~~t~----~g~--ir~--~~~CLd~~~~~~~~~~~~~p~~~~~~~~v~l~~C~~~~~~~~~~C~~~~~~~~Q~W~~ 227 (277)
+|+|.++. +|. |+. .++||++....+ ..++.|.++.|++.. +|+|.+
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~----------------------~~g~~v~~~~~~~~~---~Q~W~i 56 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGST----------------------ANGTNVQQWTCNGND---NQQWKI 56 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTC----------------------STTEBEEEEESSSSG---GGEEEE
T ss_pred CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCc----------------------CCCcEEEEecCCCCc---CcEEEE
Confidence 79999987 333 443 689999986531 134566666666633 789998
Q ss_pred eCCC-C--ceeeCccCccceeecC----CCceEEecCCCCCCCCceEEe
Q psy11641 228 HNST-R--QLEHAILKRCLSVHPE----TNQLAMLRCDENNSYQQWRFK 269 (277)
Q Consensus 228 ~~~~-~--~l~~~~s~~CLd~~~~----~~~v~l~~C~~~~~~Q~W~~~ 269 (277)
.+.+ | .|++..+++|||+... +..|.+++|+.+.++|+|.|+
T Consensus 57 ~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~~~~~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 57 EPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQWEYDNGSDNQQWKLE 105 (105)
T ss_dssp EESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEEEE-STSSGGGEEEEE
T ss_pred EEecCCeEEEEECCCCcEEEECCCCCCCCCEEEEEeCCCCCccCEEEeC
Confidence 8643 4 6889999999999743 467999999444689999985
No 13
>KOG3736|consensus
Probab=98.54 E-value=2.1e-07 Score=90.67 Aligned_cols=66 Identities=29% Similarity=0.604 Sum_probs=49.9
Q ss_pred ccccccCCCCCceEEEEecCCCCCcceEEECCCCcccc--CCcceeecCCchhhhhhcccceeeecccEEEEeecCCCce
Q psy11641 132 KCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGH--GERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVL 209 (277)
Q Consensus 132 ~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~g~ir~--~~~CLd~~~~~~~~~~~~~p~~~~~~~~v~l~~C~~~~~~ 209 (277)
.||+.. ..|. |.|..||..+ +|.|.|..+|.|++ .++||++.... ..+.|..|+.+
T Consensus 507 ~cl~~~--~~~~-v~l~~C~~~~-~q~w~~~~~~~i~~~~sg~CL~~~~~~---------------~~~~l~~c~~~--- 564 (578)
T KOG3736|consen 507 LCLDVD--DAGK-VTLYDCHKMG-NQLWHYDKDGTLYHRNSGKCLEAAVDK---------------NGLILVACDPS--- 564 (578)
T ss_pred EEeccc--cCCc-eEEEeccccc-ccceEEcCCCceEcCCCCccccccCCC---------------CCceEeecCCC---
Confidence 676663 1233 9999999876 99999999999986 57999987652 12778888766
Q ss_pred eeeeccCCCCCCCCceEEeC
Q psy11641 210 NLFNCFNSSGTVDGPWRFHN 229 (277)
Q Consensus 210 ~~~~C~~~~~~~~Q~W~~~~ 229 (277)
+..|+|.|..
T Consensus 565 ----------~~~Q~W~~~~ 574 (578)
T KOG3736|consen 565 ----------DPTQQWLFEH 574 (578)
T ss_pred ----------CCcceEEEEe
Confidence 3479999864
No 14
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=98.36 E-value=9.5e-07 Score=67.75 Aligned_cols=82 Identities=17% Similarity=0.349 Sum_probs=60.7
Q ss_pred ceeeEEecCccccccccCCC--CCceEEEEecCCCCCcceEEECCC--Cc--cc--cCCcceeecCCchhhhhhccccee
Q psy11641 121 FWGEAKNLGTQKCLDSMGRT--APAVIGTSYCHGSGSSQLFRLNAE--GQ--LG--HGERCVDADKQEKLVEMLKLPVTF 192 (277)
Q Consensus 121 ~~G~Irn~~s~~CLd~~~~~--~g~~v~l~~C~~~~~~Q~W~~t~~--g~--ir--~~~~CLd~~~~~~~~~~~~~p~~~ 192 (277)
....|+|..+++||++.+.. .|..+.+++|++. .+|+|.+... |. |+ ..++|||+.+.+.
T Consensus 15 g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~-~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~----------- 82 (105)
T PF14200_consen 15 GYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGN-DNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGST----------- 82 (105)
T ss_dssp TEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSS-GGGEEEEEESTTSEEEEEETSTTEEEEEGGGSS-----------
T ss_pred CEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCC-cCcEEEEEEecCCeEEEEECCCCcEEEECCCCC-----------
Confidence 56789999999999998643 6889999999984 6999999875 43 44 3689999976531
Q ss_pred eecccEEEEeecCCCceeeeec-cCCCCCCCCceEEe
Q psy11641 193 CVLAGVKLIFCRLGTVLNLFNC-FNSSGTVDGPWRFH 228 (277)
Q Consensus 193 ~~~~~v~l~~C~~~~~~~~~~C-~~~~~~~~Q~W~~~ 228 (277)
.+++.|.+|.| .+. .+|+|++.
T Consensus 83 -----------~~g~~v~~~~~~~~~---~~Q~W~l~ 105 (105)
T PF14200_consen 83 -----------ANGTNVQQWEYDNGS---DNQQWKLE 105 (105)
T ss_dssp -----------STTEBEEEEE-STSS---GGGEEEEE
T ss_pred -----------CCCCEEEEEeCCCCC---ccCEEEeC
Confidence 13566777777 333 37899873
No 15
>KOG3738|consensus
Probab=97.30 E-value=0.00011 Score=68.17 Aligned_cols=79 Identities=29% Similarity=0.611 Sum_probs=57.4
Q ss_pred CCccccCCcceeecCCchhhhhhcccceeeecccEEEEeecCCCceeeeeccCCCCCCCCceEEeCCCCceeeCccCccc
Q psy11641 164 EGQLGHGERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCL 243 (277)
Q Consensus 164 ~g~ir~~~~CLd~~~~~~~~~~~~~p~~~~~~~~v~l~~C~~~~~~~~~~C~~~~~~~~Q~W~~~~~~~~l~~~~s~~CL 243 (277)
.|.|+.++.||+..+.. ....+.++.||++++ +|+|.+....+++ .....+||
T Consensus 434 ~g~lrqg~~Cl~s~~~~------------------------~~~~~gl~~C~~s~~--nqqwa~~~t~~~~-~~~~elCL 486 (559)
T KOG3738|consen 434 TGTLRQGDNCLDSQGQN------------------------SQEALGLASCHGSGG--NQQWAFLRTSTQL-ITHRELCL 486 (559)
T ss_pred ccchhccchhhhhhhcc------------------------cccCcceeecccCCC--CcchhhhhhhhhH-HHHHhhhh
Confidence 47788899999987642 123466888888876 6799885422222 23468999
Q ss_pred eeecC--CCceEEecCCCCCCCCceEEe
Q psy11641 244 SVHPE--TNQLAMLRCDENNSYQQWRFK 269 (277)
Q Consensus 244 d~~~~--~~~v~l~~C~~~~~~Q~W~~~ 269 (277)
++... +..|.+.+|....+.|+|.-.
T Consensus 487 ~v~~~~pg~~v~l~~C~~~e~~q~~v~~ 514 (559)
T KOG3738|consen 487 AVGSNTPGSPVALVPCGNNETKQRWVEL 514 (559)
T ss_pred eeecCCCCCeEEEEecCCCCCceEEEec
Confidence 99753 678999999998888988754
No 16
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=94.92 E-value=0.064 Score=43.93 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=31.6
Q ss_pred CCCCceEEeCC-CC--ceeeCccCccceeecCCC-----ceEEecCCCC---CCCCceEEeee
Q psy11641 220 TVDGPWRFHNS-TR--QLEHAILKRCLSVHPETN-----QLAMLRCDEN---NSYQQWRFKEV 271 (277)
Q Consensus 220 ~~~Q~W~~~~~-~~--~l~~~~s~~CLd~~~~~~-----~v~l~~C~~~---~~~Q~W~~~~~ 271 (277)
+..|.|.+.+. +| +|++..++.||....... .+.+.+|+.. +..|+|.|...
T Consensus 82 ~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~~~~~~~~~i~l~~Cd~~~~~~l~~lw~itPP 144 (150)
T PF03498_consen 82 NLEQVFSIIPTTTGAVQIKSLSTGECLQTFNNSRTPIYYSIGLTPCDKSKEINLDQLWFITPP 144 (150)
T ss_dssp HGHH-EEEEEBTTS-EEEEETTT--EEEE-STTSS-SSEEEEEE---S-EEETGGGEEEEE--
T ss_pred ChhceEEEEEcCCCcEEEEecCCCceEEecCCCceeEEeeEEeeeCCCcCCCCHHHcEEEcCC
Confidence 44689987653 44 788999999999875432 7889999433 57899999763
No 17
>PLN02899 alpha-galactosidase
Probab=82.30 E-value=0.78 Score=45.59 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCceEEeCCCCceeeCccCccceeec
Q psy11641 222 DGPWRFHNSTRQLEHAILKRCLSVHP 247 (277)
Q Consensus 222 ~Q~W~~~~~~~~l~~~~s~~CLd~~~ 247 (277)
+|.|.+.+ +|.|++..||+|.++..
T Consensus 516 ~q~w~l~~-~g~l~~~~sglca~v~~ 540 (633)
T PLN02899 516 NQMWELNN-NGTLISSYSGLCATVNS 540 (633)
T ss_pred hhceeeCC-CCCEecCccccceEeec
Confidence 78999987 99999999999999974
No 18
>PF07598 DUF1561: Protein of unknown function (DUF1561); InterPro: IPR011455 This is a family of paralogous proteins in Leptospira interrogans.
Probab=76.72 E-value=6.4 Score=38.74 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=36.8
Q ss_pred CCCCceeeEEecCccccccccCCCCCceEEEEecCCCCCcceEEECCCCcc----ccCCcceeecCC
Q psy11641 117 PPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL----GHGERCVDADKQ 179 (277)
Q Consensus 117 ~~~~~~G~Irn~~s~~CLd~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~g~i----r~~~~CLd~~~~ 179 (277)
|.+.+...+.+.+...|....-.+..+-+.+..|..... -.=+|+.-+.| ....+|++++.+
T Consensus 34 P~Dk~I~V~vh~g~~yCY~P~F~~GEsYi~i~~C~~~~v-~~ARYDvFqRIswnin~tWLCmTAP~s 99 (632)
T PF07598_consen 34 PKDKPIKVKVHDGGEYCYAPVFSGGESYIYIEDCSSSHV-MKARYDVFQRISWNINNTWLCMTAPES 99 (632)
T ss_pred CCCcceEEEEcCCCceEecceecCCceeEEEecccCccc-chhhhceeeeEEEEeCCEEEEEecCch
Confidence 445566666677788998876544456788999976421 11123322332 224689888764
No 19
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=74.37 E-value=2.5 Score=34.59 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=26.9
Q ss_pred ceeeCccCccceeecCCCceEEecCCCCCCCCceEEeee
Q psy11641 233 QLEHAILKRCLSVHPETNQLAMLRCDENNSYQQWRFKEV 271 (277)
Q Consensus 233 ~l~~~~s~~CLd~~~~~~~v~l~~C~~~~~~Q~W~~~~~ 271 (277)
+++++.++.||.+.++ +.+....|+.++..|.|.|..+
T Consensus 55 qf~n~~~~~CL~~~~~-G~~~~~~C~~~~~~q~F~iiPt 92 (150)
T PF03498_consen 55 QFVNPKTGTCLAAYGN-GVFHYKSCDQDNLEQVFSIIPT 92 (150)
T ss_dssp EEEETTTSEEEEEETT-CEEEE--TTTCHGHH-EEEEEB
T ss_pred EEEcCCCCcceeecCC-CeEeecccCCCChhceEEEEEc
Confidence 6788889999999643 3333334999878899999764
No 20
>PLN02899 alpha-galactosidase
Probab=64.06 E-value=5.7 Score=39.69 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=37.2
Q ss_pred CccccccccCCCC-----CceEEEEecCCCCCcceEEECCCCcccc--CCcceeecCC
Q psy11641 129 GTQKCLDSMGRTA-----PAVIGTSYCHGSGSSQLFRLNAEGQLGH--GERCVDADKQ 179 (277)
Q Consensus 129 ~s~~CLd~~~~~~-----g~~v~l~~C~~~~~~Q~W~~t~~g~ir~--~~~CLd~~~~ 179 (277)
...+|||+.+..+ -......+|... .+|.|+++.+|.|.+ .++|..+...
T Consensus 485 ~~~~c~~~~~~~~~~~~~~~~~~fs~c~~~-~~q~w~l~~~g~l~~~~sglca~v~~~ 541 (633)
T PLN02899 485 GGELCLDASPKQKRTSKDFRSGSFSPCRWD-ANQMWELNNNGTLISSYSGLCATVNSV 541 (633)
T ss_pred ccChhhccCCCCCcCHhHhhccccCCCCCC-hhhceeeCCCCCEecCccccceEeecc
Confidence 4789999986432 122335689664 699999999999986 5899998754
No 21
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=32.23 E-value=14 Score=18.84 Aligned_cols=10 Identities=50% Similarity=1.185 Sum_probs=8.1
Q ss_pred hhcCCcCcch
Q psy11641 91 DKLHCKDFSW 100 (277)
Q Consensus 91 ~~l~CksF~W 100 (277)
.+..||.|-|
T Consensus 3 ~k~~CknffW 12 (18)
T PF03002_consen 3 RKAGCKNFFW 12 (18)
T ss_pred ccccccceee
Confidence 4668999988
Done!