RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11641
(277 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 59.9 bits (146), Expect = 2e-10
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 60 WLKVFKQIRSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVA 106
W+ +K+ P +D GD+SE+ ALR++L CK F W++++V
Sbjct: 253 WMDEYKEYFYKARPELRNIDYGDLSERKALRERLKCKSFKWYLENVY 299
>gnl|CDD|238092 cd00161, RICIN, Ricin-type beta-trefoil; Carbohydrate-binding
domain formed from presumed gene triplication. The
domain is found in a variety of molecules serving
diverse functions such as enzymatic activity, inhibitory
toxicity and signal transduction. Highly specific ligand
binding occurs on exposed surfaces of the compact domain
sturcture.
Length = 124
Score = 55.6 bits (134), Expect = 5e-10
Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 33/144 (22%)
Query: 130 TQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHG--ERCVDADKQEKLVEMLK 187
T CLD G + + CHG+G++Q + L ++G + C+D
Sbjct: 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDAP------ 62
Query: 188 LPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVH- 246
G+ + L+ C S G+ + W F N + + +CL V
Sbjct: 63 ------------------GSKVRLYTC--SGGSDNQRWTF-NKDGTIRNLKSGKCLDVKG 101
Query: 247 --PETNQLAMLRCDENNSYQQWRF 268
L + CD Q+W+F
Sbjct: 102 GNTNGTNLILWTCD-GGPNQKWKF 124
Score = 37.9 bits (88), Expect = 0.001
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGE--RCVDADKQE 180
G + + CLD G + + C G +Q + N +G + + + +C+D
Sbjct: 44 GTIRIKSSNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDGTIRNLKSGKCLDVKGGN 103
Query: 181 K 181
Sbjct: 104 T 104
Score = 37.5 bits (87), Expect = 0.002
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 206 GTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSV--HPETNQLAMLRCDENNSY 263
G + L+ C + W S + CL V +++ + C +
Sbjct: 21 GGPVQLYPCHGNGNN--QKWTL-TSDGTIRIKSSNLCLDVGGDAPGSKVRLYTCSGGSDN 77
Query: 264 QQWRFKE 270
Q+W F +
Sbjct: 78 QRWTFNK 84
Score = 34.0 bits (78), Expect = 0.020
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHG--ERCVDAD 41
G + + CHG+G++Q + L ++G + C+D
Sbjct: 16 NGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVG 58
Score = 27.1 bits (60), Expect = 5.4
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 2 GRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGE--RCVDADKQVISTQK 49
G + + C G +Q + N +G + + + +C+D +
Sbjct: 59 GDAPGSKVRLYTCSGGSDNQRWTFNKDGTIRNLKSGKCLDVKGGNTNGTN 108
>gnl|CDD|216044 pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.
Length = 124
Score = 54.9 bits (132), Expect = 1e-09
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 36/153 (23%)
Query: 121 FWGEAKNLG-TQKCLDSMGRTA-PAVIGTSYCHGSGSSQLFRLNAEGQL---GHGERCVD 175
GE +N+ + KCLD G +A +G CHG G +QL+ L +G + G+ C+D
Sbjct: 1 ASGEIRNVNRSGKCLDVPGGSADGGPVGLYPCHG-GGNQLWTLTGDGTIRSNGNSNLCLD 59
Query: 176 ADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLE 235
G+ + L+ C SG + W + + +
Sbjct: 60 VSGG------------------------GNGSKVVLWPCNGGSG--NQRWDY-DGDGTIR 92
Query: 236 HAILKRCLSVHPETN--QLAMLRCDENNSYQQW 266
+ +CL V +N ++ + CD N QQW
Sbjct: 93 NRKSGKCLDVKGASNGTKVILWTCD-GNPNQQW 124
Score = 31.7 bits (72), Expect = 0.14
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 206 GTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHP--ETNQLAMLRCDENNSY 263
G + L+ C + W + CL V +++ + C+ +
Sbjct: 24 GGPVGLYPCHGGGNQL---WTLTGDGTIRSNGNSNLCLDVSGGGNGSKVVLWPCNGGSGN 80
Query: 264 QQWRFKE 270
Q+W +
Sbjct: 81 QRWDYDG 87
Score = 27.1 bits (60), Expect = 5.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 2 GRTAPAVIGTSYCHGSGSSQLFRLNAEGQL---GHGERCVDAD 41
G +G CHG G +QL+ L +G + G+ C+D
Sbjct: 20 GSADGGPVGLYPCHG-GGNQLWTLTGDGTIRSNGNSNLCLDVS 61
Score = 26.4 bits (58), Expect = 9.4
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 14 CHGSGSSQLFRLNAEGQLGHGE--RCVDA 40
C+G +Q + + +G + + + +C+D
Sbjct: 74 CNGGSGNQRWDYDGDGTIRNRKSGKCLDV 102
>gnl|CDD|214672 smart00458, RICIN, Ricin-type beta-trefoil. Carbohydrate-binding
domain formed from presumed gene triplication.
Length = 118
Score = 51.7 bits (124), Expect = 1e-08
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 33/146 (22%)
Query: 127 NLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDADKQEKLVE 184
+ T KCLD G P + CHG+G +QL++L ++G + + C+ A+
Sbjct: 3 SGNTGKCLDVNGNKNPVGLFD--CHGTGGNQLWKLTSDGAIRIKDTDLCLTANGN----- 55
Query: 185 MLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLS 244
G+ + L++C + W N + + +CL
Sbjct: 56 --------------------TGSTVTLYSC--DGTNDNQYWEV-NKDGTIRNPDSGKCLD 92
Query: 245 V-HPETNQLAMLRCDENNSYQQWRFK 269
V T +L N Q+W F+
Sbjct: 93 VKDGNTGTKVILWTCSGNPNQKWIFE 118
Score = 30.2 bits (68), Expect = 0.40
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDADKQVIST 47
G P + CHG+G +QL++L ++G + + C+ A+ ST
Sbjct: 13 NGNKNPVGLFD--CHGTGGNQLWKLTSDGAIRIKDTDLCLTANGNTGST 59
>gnl|CDD|220036 pfam08837, DUF1810, Protein of unknown function (DUF1810). This
is a family of uncharacterized proteins. The structure
of one of the members in this family has been solved
and it adopts a mainly alpha helical structure.
Length = 139
Score = 30.6 bits (70), Expect = 0.35
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 35 ERCVDADKQVISTQKSSLEL-RKRSSWLK-VFKQIRSLG-SPLAMF 77
+R VDA V T + L RKRS W+ +F Q+ LG SP A
Sbjct: 7 QRFVDAQDPVYETALAELRAGRKRSHWMWFIFPQLAGLGRSPTARR 52
>gnl|CDD|151410 pfam10963, DUF2765, Protein of unknown function (DUF2765). This
family of proteins has no known function.
Length = 82
Score = 28.0 bits (63), Expect = 1.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 171 ERCVDADKQEKLVEMLKLP 189
R VD +++E L E+L++P
Sbjct: 40 MRTVDPEQKEALKELLEVP 58
>gnl|CDD|222968 PHA03065, PHA03065, Hypothetical protein; Provisional.
Length = 438
Score = 29.2 bits (66), Expect = 2.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 57 RSSWLKVFKQIRSLGSPLAMFLDMGDISEQVALRDK 92
RS++ + +Q + +F+D G I + +LR+K
Sbjct: 52 RSTFEEYVQQWVKKAGKVTLFVDRGSIPIKQSLREK 87
>gnl|CDD|236576 PRK09575, vmrA, multidrug efflux pump VmrA; Reviewed.
Length = 453
Score = 28.8 bits (65), Expect = 3.1
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 17/64 (26%)
Query: 176 ADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLF-----NCFNSS------GTVDGP 224
A + + + ++LKL + VLAG+ + +LNLF FNS T+ G
Sbjct: 304 ARQYDNIKKLLKLAMKVTVLAGIAWV-----LLLNLFPETMIALFNSGDSELIAETIVG- 357
Query: 225 WRFH 228
R H
Sbjct: 358 IRLH 361
>gnl|CDD|220127 pfam09149, DUF1935, Domain of unknown function (DUF1935). Members
of this family are found in various bacterial and
eukaryotic hypothetical proteins, as well as in the
cysteine protease calpain. Their exact function has not,
as yet, been defined.
Length = 97
Score = 27.2 bits (61), Expect = 3.3
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 7/31 (22%)
Query: 212 FNCFNSSG-------TVDGPWRFHNSTRQLE 235
CF G G W F+N T+ E
Sbjct: 13 TPCFKEGGLLFRIVDEKGGRWAFYNDTKDYE 43
>gnl|CDD|236965 PRK11742, PRK11742, bifunctional NADH:ubiquinone oxidoreductase
subunit C/D; Provisional.
Length = 575
Score = 28.7 bits (65), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 56 KRSSWLKVFKQIRSLGSPLAMFLDMGDISEQVAL-RDKLHCKDFSWF 101
KR L+V + +R L P M D+ I E++ R+ L DF+ F
Sbjct: 29 KREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVF 75
>gnl|CDD|214781 smart00703, NRF, N-terminal domain in C. elegans NRF-6 (Nose
Resistant to Fluoxetine-4) and NDG-4 (resistant to
nordihydroguaiaretic acid-4). Also present in several
other worm and fly proteins.
Length = 110
Score = 26.5 bits (59), Expect = 7.4
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 106 AYDVYTKFPELPPNLFWGEAKNLGT-QKC--LDSMGRTAPAVIGTSYC 150
A + + P L G LG+ ++C + G + YC
Sbjct: 4 ALKQLDAWGKFPSGLLEGNNLWLGSYEECLRISGPGTSTK--YQGKYC 49
Score = 26.2 bits (58), Expect = 9.1
Identities = 15/85 (17%), Positives = 20/85 (23%), Gaps = 14/85 (16%)
Query: 77 FLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNLGTQKCLDS 136
L +G E C S Y + L P + K L S
Sbjct: 23 NLWLGSYEE---------CLRISGPGTSTKYQGKYCYLPLVPGKNLNC-----SIKSLTS 68
Query: 137 MGRTAPAVIGTSYCHGSGSSQLFRL 161
+ V S C + L
Sbjct: 69 VLVLRTGVCLPSSCSAADLKTLLNQ 93
>gnl|CDD|153319 cd07635, BAR_GRAF2, The Bin/Amphiphysin/Rvs (BAR) domain of GTPase
Regulator Associated with Focal adhesion 2. BAR domains
are dimerization, lipid binding and curvature sensing
modules found in many different proteins with diverse
functions. GTPase Regulator Associated with Focal
adhesion kinase 2 (GRAF2), also called Rho GTPase
activating protein 10 (ARHGAP10) or PS-GAP, is a GAP
with activity towards Cdc42 and RhoA which regulates
caspase-activated p21-activated protein kinase-2
(PAK-2p34). GRAF2 interacts with PAK-2p34, leading to
its stabilization and decrease of cell death. It is
highly expressed in skeletal muscle and also interacts
with PKNbeta, which is a target of Rho. GRAF2 contains
an N-terminal BAR domain, followed by a Pleckstrin
homology (PH) domain, a Rho GAP domain, and a C-terminal
SH3 domain. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
The BAR domain of the related protein GRAF directly
interacts with its Rho GAP domain and inhibits its
activity. Autoinhibited GRAF is capable of binding
membranes and tubulating liposomes, showing that the
membrane-tubulation and GAP-inhibitory functions of the
BAR domain can occur simultaneously.
Length = 207
Score = 27.3 bits (60), Expect = 7.5
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 35 ERCVDADKQVISTQKSSLELRKRSSWLKVFKQIRSLGSPLAMFL--DMGDISEQVALRDK 92
ERC+DA Q S +LE ++ L V +L PL F +G + E+ DK
Sbjct: 62 ERCIDASLQEFSNFLKNLEEQREIMALNV---TETLIKPLERFRKEQLGAVKEEKKKFDK 118
Query: 93 LHCKDFSWFMKHVAYDVYTKFPEL 116
K++S KH+ K P+L
Sbjct: 119 ETEKNYSLLEKHLNLSAKKKEPQL 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.428
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,660,132
Number of extensions: 1227050
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 788
Number of HSP's successfully gapped: 26
Length of query: 277
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 181
Effective length of database: 6,679,618
Effective search space: 1209010858
Effective search space used: 1209010858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)