RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11641
(277 letters)
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 138 bits (349), Expect = 6e-38
Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 55 RKRSSWLKVFKQIRSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFP 114
R W+ +K P A + G+I ++ LR KL CK F W++++V ++
Sbjct: 313 RAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPEL---RV 369
Query: 115 ELPPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCV 174
++ +G + CLD++G A V+G CH +G +Q + L E + H + C+
Sbjct: 370 PDHQDIAFGALQQ--GTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCL 427
Query: 175 DADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQL 234
+ G+++ L C + W +L
Sbjct: 428 TVVDRAP------------------------GSLIKLQGCRENDS--RQKWEQIEGNSKL 461
Query: 235 EHAILKRCLSVHPETNQLAMLRCDENNSYQQWRF 268
H CL + + QQW+F
Sbjct: 462 RHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKF 495
Score = 46.7 bits (110), Expect = 4e-06
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQ 43
+G A V+G CH +G +Q + L E + H + C+ +
Sbjct: 390 LGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDR 432
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 134 bits (338), Expect = 1e-36
Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 35/216 (16%)
Query: 58 SSWLKVFKQIRSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELP 117
W+ FK + SP +D GDIS ++ LR KL CK FSW+++++ D
Sbjct: 284 EVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIP----R 339
Query: 118 PNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDAD 177
GE +N+ T +CLD+M R +G CHG G +Q+F A ++ + C+D
Sbjct: 340 HYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVS 399
Query: 178 KQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHA 237
K + + C + G + W + L+H
Sbjct: 400 KL--------------------------NGPVTMLKCHHLKG--NQLWEYDPVKLTLQHV 431
Query: 238 ILKRCLSV--HPETNQLAMLRCDENNSYQQWRFKEV 271
+CL ++ ++ C + S QQW + V
Sbjct: 432 NSNQCLDKATEEDSQVPSIRDCTGSRS-QQWLLRNV 466
Score = 47.4 bits (112), Expect = 2e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQ 43
M R +G CHG G +Q+F A ++ + C+D K
Sbjct: 359 MARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKL 401
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 131 bits (331), Expect = 4e-35
Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 30/247 (12%)
Query: 32 GHGERCVDADKQVISTQKSSLELRKRSSWLKVFKQIRSLGSPLAMFLDMGDISEQVALRD 91
GH R K + R W+ + + P L GD++ Q LR
Sbjct: 336 GHIYRKYVPYKVPAGVSLARNLKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQKKLRS 395
Query: 92 KLHCKDFSWFMKHVAYDVYTKFPEL-PPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYC 150
L+CK F WFM +A+D+ +P + PP WGE +N+GT C D+ + + C
Sbjct: 396 SLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNVGTGLCADTKHGALGSPLRLEGC 455
Query: 151 HGSGS------SQLFRLNAEGQLGHGERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCR 204
Q+F + G+ FC A
Sbjct: 456 VRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKK--------------FCFDAI------S 495
Query: 205 LGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPETNQLAMLRCDENNSYQ 264
+ + L++C + G + W++ + L H + C+ +++ M C+ ++ Q
Sbjct: 496 HTSPVTLYDCHSMKG--NQLWKY-RKDKTLYHPVSGSCMDCSESDHRIFMNTCNPSSLTQ 552
Query: 265 QWRFKEV 271
QW F+
Sbjct: 553 QWLFEHT 559
Score = 32.1 bits (72), Expect = 0.21
Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 12/55 (21%)
Query: 1 MGRTAPAVIGTSYCHGSGS------SQLFRLNAEGQLGHG------ERCVDADKQ 43
+ + C Q+F + G + C DA
Sbjct: 442 KHGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFDAISH 496
Score = 29.8 bits (66), Expect = 1.1
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 14 CHGSGSSQLFRLNAEGQLGHGE--RCVDADK 42
CH +QL++ + L H C+D +
Sbjct: 505 CHSMKGNQLWKYRKDKTLYHPVSGSCMDCSE 535
>3a07_A Actinohivin; carbohydrate-binding module family 13, antiviral
protein, LE; 1.19A {Actinomycete}
Length = 118
Score = 49.0 bits (117), Expect = 8e-08
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 39/149 (26%)
Query: 122 WGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDADKQ 179
+N T + LDS + T +G G+ Q + +G + RC+D++
Sbjct: 6 SVTIRNAQTGRLLDSNYNGN---VYTLPANG-GNYQRWTGPGDGTVRNAQTGRCLDSNY- 60
Query: 180 EKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAIL 239
+ C +G W F S +++
Sbjct: 61 --------------------------DGAVYTLPC---NGGSYQKWLF-YSNGYIQNVET 90
Query: 240 KRCLSVHPETNQLAMLRCDENNSYQQWRF 268
R L + + L + +YQ+W
Sbjct: 91 GRVLDSNYNG-NVYTLPAN-GGNYQKWYT 117
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 46.3 bits (109), Expect = 5e-06
Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 38/157 (24%)
Query: 121 FWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDADK 178
F+G +N + CLD G + C Q FR G++ C+D +
Sbjct: 154 FYGRLRNEKSDLCLDVEGSDGKGNVLMYSCED-NLDQWFRYYENGEIVNAKSGMCLDVEG 212
Query: 179 QEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAI 238
+ + ++ C D W N+ ++
Sbjct: 213 SDG------------------------SGNVGIYRC---DDLRDQMWSRPNAYCNGDYCS 245
Query: 239 LK-----RCLSVHPETN--QLAMLRCDENNSYQQWRF 268
+CL V + + +CD Q++++
Sbjct: 246 FLNKESNKCLDVSGDQGTGDVGTWQCD-GLPDQRFKW 281
Score = 45.1 bits (106), Expect = 1e-05
Identities = 29/190 (15%), Positives = 52/190 (27%), Gaps = 40/190 (21%)
Query: 95 CKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSG 154
+ + T E NL + KCLD G IG C
Sbjct: 81 YPEIPSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGDIGVYDCQN-L 139
Query: 155 SSQLFRLNAEGQLG--------HGERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLG 206
Q F + + G + C+D + +
Sbjct: 140 DDQYFYVRSRGPELFYGRLRNEKSDLCLDVEGSDG------------------------K 175
Query: 207 TVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPETN--QLAMLRCDENNSYQ 264
+ +++C +D +R+ ++ +A CL V + + RCD+ Q
Sbjct: 176 GNVLMYSC---EDNLDQWFRY-YENGEIVNAKSGMCLDVEGSDGSGNVGIYRCDDLRD-Q 230
Query: 265 QWRFKEVRPD 274
W +
Sbjct: 231 MWSRPNAYCN 240
Score = 44.0 bits (103), Expect = 3e-05
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 121 FWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDAD 177
GE ++ +++C+D +G I T C G S Q + +G + C D
Sbjct: 9 DIGELRSFKSKQCVDIVGNQGSGNIATYDCDG-LSDQQIIICGDGTIRNEARNYCFTPD 66
Score = 32.8 bits (74), Expect = 0.10
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 113 FPELPPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEG 165
P N + N + KCLD G +GT C G Q F+ +
Sbjct: 234 RPNAYCNGDYCSFLNKESNKCLDVSGDQGTGDVGTWQCDG-LPDQRFKWVFDD 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 42/270 (15%), Positives = 88/270 (32%), Gaps = 68/270 (25%)
Query: 38 VDADKQVISTQKSSLELRKRSSWLKVFKQIRSLGSPLAMFLDMGDISEQV---------- 87
V+ DK + + +SSL + + + + K+F + L++F I +
Sbjct: 350 VNCDK-LTTIIESSLNVLEPAEYRKMFDR-------LSVFPPSAHIPTILLSLIWFDVIK 401
Query: 88 ----ALRDKLHCKDFSWFMKHVA------YDVYTKFPELPPNLFWGEAKNLG---TQKCL 134
+ +KLH +S K +Y + N + + K
Sbjct: 402 SDVMVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 135 DSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQEKLVEMLKLPVTFCV 194
DS P + Y H +GH + ++ ++ L M+ L F
Sbjct: 460 DSDDLIPPYLDQYFYSH---------------IGHHLKNIEHPERMTLFRMVFLDFRF-- 502
Query: 195 LAGVKLI-----FCRLGTVLNLFNCFNSSG---TVDGPWRFHNSTRQLEHAILKRC---L 243
K+ + G++LN + P ++ + L + L
Sbjct: 503 -LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILD-FLPKIEENL 559
Query: 244 SVHPETN--QLAMLRCDENNSYQQWRFKEV 271
T+ ++A++ E+ + + K+V
Sbjct: 560 ICSKYTDLLRIALM--AEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 4e-04
Identities = 37/185 (20%), Positives = 54/185 (29%), Gaps = 59/185 (31%)
Query: 17 SGSSQ-LFRLNAEGQLGHGERCVDADKQVISTQKSSLELRKRSSWLKVFKQIRSLG---- 71
SG Q L+ LN L + Q S + +R K+ R L
Sbjct: 380 SGPPQSLYGLNL--TL-RKAKAPSGLDQ------SRIPFSER----KLKFSNRFLPVASP 426
Query: 72 --SPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKF---------PELPPNL 120
S L + S+ + +D L + S+ K + VY F + +
Sbjct: 427 FHSHL-----LVPASDLI-NKD-LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 121 F---------WGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGE 171
W LD G P G + SG L N +G G
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILD-FG---P---GGA----SGLGVLTHRNKDGT---GV 525
Query: 172 RCVDA 176
R + A
Sbjct: 526 RVIVA 530
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 40.2 bits (93), Expect = 6e-04
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 27/169 (15%)
Query: 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSS-QLFRLNAEGQLGHG----------- 170
G ++ G KCL + G +A + C ++ +++ A G + +
Sbjct: 362 GTIRSNG--KCLTTNGYSAGDYVMIYDCRTPVTAASIWQFWANGTIINPQSALVLSAESG 419
Query: 171 --------ERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVD 222
+ + A +Q L P ++ L G + + C S +
Sbjct: 420 NPRTTLTVQADIYASRQGWLAGNNTEPFVTSIVGFNDLCMQANGDAMWVVEC--ESSKAE 477
Query: 223 GPWRFHNSTRQLEHAILKRCLSVHPET---NQLAMLRCDENNSYQQWRF 268
W + H RCL+ + + + C + Q+W F
Sbjct: 478 QKWALYPDGSIRPHQDRDRCLTSTDNHSQGSIIIISSCSPGSEGQRWVF 526
Score = 36.8 bits (84), Expect = 0.006
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 127 NLGTQKCLDSMGRTAP-AVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDAD 177
+ +CL S + ++I S C Q + +G + +D
Sbjct: 491 HQDRDRCLTSTDNHSQGSIIIISSCSPGSEGQRWVFMNDGTILNLKNGLVMDVK 544
Score = 32.9 bits (74), Expect = 0.11
Identities = 17/163 (10%), Positives = 37/163 (22%), Gaps = 32/163 (19%)
Query: 132 KCLD-SMGRTAP-AVIGTSYCHGSGSS-QLFRLNAEGQLGHGERCVDA------------ 176
C+ G+ I C + QL+ L +G + +C+
Sbjct: 326 LCVRVRDGKYNNGNPIQLWPCKQNSDVNQLWTLRRDGTIRSNGKCLTTNGYSAGDYVMIY 385
Query: 177 -------DKQEKLVEMLKLPVT----FCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPW 225
+ + A T L + +S
Sbjct: 386 DCRTPVTAASIWQFWANGTIINPQSALVLSAES----GNPRTTLTVQADIYASRQGWLAG 441
Query: 226 RFHNSTRQLEHAILKRCLSVHPETNQLAMLRCDENNSYQQWRF 268
C+ + + + C+ + + Q+W
Sbjct: 442 NNTEPFVTSIVGFNDLCMQANGDAMWVV--ECESSKAEQKWAL 482
Score = 27.1 bits (59), Expect = 8.5
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 2 GRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDAD 41
+ ++I S C Q + +G + +D
Sbjct: 503 NHSQGSIIIISSCSPGSEGQRWVFMNDGTILNLKNGLVMDVK 544
>1knl_A Endo-1,4-beta-xylanase A; carbohydrate binding module, CBM13 xylan
binding domain, LEC ricin B-like, beta-trefoil fold,
hydrolase; 1.20A {Streptomyces lividans} SCOP: b.42.2.1
PDB: 1knm_A* 1mc9_A*
Length = 130
Score = 36.9 bits (86), Expect = 0.001
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 41/160 (25%)
Query: 118 PNLFWGEAKNLGTQKCLDSMGRT----APAVIGTSYCHGSGSSQLFRLNAEGQL-GHGER 172
P G+ K +G+ +CLD + + CH G++Q + G+L +G++
Sbjct: 2 PPADGGQIKGVGSGRCLDVPDASTSDGTQLQLWD--CHS-GTNQQWAATDAGELRVYGDK 58
Query: 173 CVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTR 232
C+DA G+ + +++C+ WR NS
Sbjct: 59 CLDAAGTSN------------------------GSKVQIYSCWGGDNQK---WRL-NSDG 90
Query: 233 QLEHAILKRCLSVHPET----NQLAMLRCDENNSYQQWRF 268
+ CL + + C ++ Q+W
Sbjct: 91 SVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGSN-QRWTR 129
>1ggp_B TKL-1, protein (lectin 1 B chain); sugar binding protein; 2.70A
{Trichosanthes kirilowii} SCOP: b.42.2.1 b.42.2.1
Length = 254
Score = 38.3 bits (88), Expect = 0.002
Identities = 23/159 (14%), Positives = 39/159 (24%), Gaps = 26/159 (16%)
Query: 132 KCLDSMGRTAP-AVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADK------------ 178
C D G A I C +QL+ L E + C+
Sbjct: 14 FCADVNGEGQNGAAIILKKCAE-NDNQLWTLKREATIRSNGGCLTTAAAEQAKAGIYDCT 72
Query: 179 ---------QEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHN 229
+ + P + VL+ L + +S +
Sbjct: 73 QATAELSAWEIADNGTIINPASSLVLSSGA---ANSLLDLGVQTNSYASAQGWRTGNETS 129
Query: 230 STRQLEHAILKRCLSVHPETNQLAMLRCDENNSYQQWRF 268
++ + C+ L M C + QQW
Sbjct: 130 ASVTQISGSAQLCMQAGNGPANLWMSECRAGKAEQQWAL 168
Score = 34.8 bits (79), Expect = 0.021
Identities = 28/198 (14%), Positives = 58/198 (29%), Gaps = 36/198 (18%)
Query: 14 CHGSGSSQLFRLNAEGQLGHGERCVD---ADKQVISTQKSSLELRKRSSW-LKVFKQIRS 69
C +QL+ L E + C+ A++ + + S+W + I +
Sbjct: 33 CAE-NDNQLWTLKREATIRSNGGCLTTAAAEQAKAGIYDCTQATAELSAWEIADNGTIIN 91
Query: 70 LGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPEL---------PPNL 120
S L + + + ++ + W + T+ P
Sbjct: 92 PASSLVLSSGAANSLLDLGVQTNSYASAQGWRTGNETSASVTQISGSAQLCMQAGNGPAN 151
Query: 121 FWGEAKNLGTQ-------------------KCLDSMGRTAPAVIGTSYCHGSGSSQLFRL 161
W G CL S P I + C G SQ +
Sbjct: 152 LWMSECRAGKAEQQWALLTDKSIRSETNSDNCLTSAADAGPKTILLALCSGPA-SQRWVF 210
Query: 162 NAEGQL--GHGERCVDAD 177
+ +G + + ++ +D++
Sbjct: 211 DDDGSILSLYDDKQMDSE 228
>2aai_B Ricin (B chain); glycosidase; HET: GAL BGC NDG NAG BMA MAN; 2.50A
{Ricinus communis} SCOP: b.42.2.1 b.42.2.1 PDB: 3rti_B*
3rtj_B* 1rzo_B*
Length = 262
Score = 38.1 bits (88), Expect = 0.002
Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 26/169 (15%)
Query: 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGS-SQLFRLNAEGQL--GHGERCVDA--- 176
++ G KCL + G + + C+ + + + +++ G + + A
Sbjct: 55 NTIRSNG--KCLTTYGYSPGVYVMIYDCNTAATDATRWQIWDNGTIINPRSSLVLAATSG 112
Query: 177 --------------DKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVD 222
Q L P ++ L + + +C + +
Sbjct: 113 NSGTTLTVQTNIYAVSQGWLPTNNTQPFVTTIVGLYGLCLQANSGQVWIEDCSS--EKAE 170
Query: 223 GPWRFHNSTRQLEHAILKRCLSVHPETN--QLAMLRCDENNSYQQWRFK 269
W + CL+ + +L C +S Q+W FK
Sbjct: 171 QQWALYADGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFK 219
Score = 35.8 bits (82), Expect = 0.009
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 127 NLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDAD 177
CL S V+ C + S Q + +G + + +D
Sbjct: 184 QQNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFKNDGTILNLYSGLVLDVR 236
Score = 34.3 bits (78), Expect = 0.035
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 32/149 (21%)
Query: 132 KCLDSMG-RTAP-AVIGTSYCHGSGSS-QLFRLNAEGQLGHGERCVDADKQEKLVEMLKL 188
C+D R I C + + QL+ L + + +C+
Sbjct: 19 LCVDVRDGRFHNGNAIQLWPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYSP------- 71
Query: 189 PVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPE 248
G + +++C N++ T W+ + + L+
Sbjct: 72 -----------------GVYVMIYDC-NTAATDATRWQI-WDNGTIINPRSSLVLAATSG 112
Query: 249 TN--QLAMLRCDENNSYQQWRFKEVRPDW 275
+ L + S Q W +
Sbjct: 113 NSGTTLTVQTNIYAVS-QGWLPTNNTQPF 140
Score = 28.5 bits (63), Expect = 2.5
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 2 GRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDAD 41
V+ C + S Q + +G + + +D
Sbjct: 195 SNIRETVVKILSCGPASSGQRWMFKNDGTILNLYSGLVLDVR 236
>3c9z_A Agglutinin II, SNA-II; beta-trefoil, ricin-B domain, glycosylation,
glycoprotein, L sugar binding protein, plant protein;
HET: NAG FUC SO4; 1.35A {Sambucus nigra} PDB: 3ca0_A*
3ca1_A* 3ca3_A* 3ca4_A* 3ca5_A* 3ca6_A* 3cah_A* 1hwm_B*
1hwn_B* 1hwo_B* 1hwp_B*
Length = 258
Score = 36.9 bits (85), Expect = 0.004
Identities = 14/149 (9%), Positives = 38/149 (25%), Gaps = 34/149 (22%)
Query: 132 KCLDSMG-RTAP-AVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQEKLVEMLKLP 189
C+D + C +Q + +++ + +C+ A+
Sbjct: 13 LCVDVRNGYDTDGTPLQLWPCGT-QRNQRWTFDSDDTIRSMGKCMTANGLNN-------- 63
Query: 190 VTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRF-HNSTRQLEHAILKRCLSVHPE 248
G+ + +FNC S + ++ + + ++
Sbjct: 64 ----------------GSNIVIFNC---STAAENAIKWEVPIDGSIINPSSGLVMTAPRA 104
Query: 249 TN--QLAMLRCDENNSYQQWRFKEVRPDW 275
+ L + + Q W
Sbjct: 105 ASRTILLLEDNI-YAASQGWTVTNNVKPI 132
Score = 34.6 bits (79), Expect = 0.025
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 29/149 (19%)
Query: 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGS-SQLFRLNAEGQLGHGE--RCVDADKQ 179
+++G KC+ + G + I C + + + + +G + + + A +
Sbjct: 47 DTIRSMG--KCMTANGLNNGSNIVIFNCSTAAENAIKWEVPIDGSIINPSSGLVMTAPRA 104
Query: 180 EKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAIL 239
T+L L + ++
Sbjct: 105 AS------------------------RTILLLEDNIYAASQGWTVTNNVKPIVASIVGYK 140
Query: 240 KRCLSVHPETNQLAMLRCDENNSYQQWRF 268
+ CL + E N + M C+ + QQW
Sbjct: 141 EMCLQSNGENNGVWMEDCEATSLQQQWAL 169
Score = 32.7 bits (74), Expect = 0.097
Identities = 31/265 (11%), Positives = 68/265 (25%), Gaps = 52/265 (19%)
Query: 14 CHGSGSSQLFRLNAEGQLGHGERCVDADK-----QVISTQKSSLELRKRSSWLKVFKQIR 68
C +Q + +++ + +C+ A+ ++ S+ + + I
Sbjct: 33 CGT-QRNQRWTFDSDDTIRSMGKCMTANGLNNGSNIVIFNCSTAAENAIKWEVPIDGSII 91
Query: 69 SLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNL 128
+ S L M + L D Y + +
Sbjct: 92 NPSSGLVMTAPRAASRTILLLED---N----------IYAASQGWTVTNNVKPIVASIVG 138
Query: 129 GTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL-GHGERCVDADKQEKLVEMLK 187
+ CL S G + C + Q + L + + + R +
Sbjct: 139 YKEMCLQSNGENNG--VWMEDCEATSLQQQWALYGDRTIRVNSTRGLCVTTNGYNS---- 192
Query: 188 LPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHP 247
++ + C G W F NS + + + + V
Sbjct: 193 ------------------KDLIIILKC---QGLPSQRWFF-NSDGAIVNPKSRLVMDVRA 230
Query: 248 ET---NQLAMLRCDENNSYQQWRFK 269
++ + N QQW +
Sbjct: 231 SNVSLREIIIFPAT-GNPNQQWVTQ 254
>1dqg_A Mannose receptor; beta trefoil, multilectin receptor, pituitary
hormones, sulfated carbohydrate, sugar binding protein;
1.70A {Mus musculus} SCOP: b.42.2.2 PDB: 1dqo_A* 1fwu_A*
1fwv_A*
Length = 135
Score = 35.1 bits (80), Expect = 0.008
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 225 WRFHNSTRQLEHAILKRCLSVHPETNQ--LAMLRCDENNSYQQWR 267
+R+ S Q+ K CL V +T+ + + CD + YQ+W
Sbjct: 39 FRW-VSDSQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKWE 82
Score = 28.5 bits (63), Expect = 1.3
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 233 QLEHAILKRCLSVHPETNQLAMLRCDENNSYQQWRF 268
+ + KRC+ + C+ Q++R+
Sbjct: 7 LIYNEDHKRCVDA-LSAISVQTATCNPEAESQKFRW 41
Score = 27.8 bits (61), Expect = 2.7
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 127 NLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLG 168
++ + CL +T A + C Q + + G
Sbjct: 49 SVAFKLCLGVPSKTDWASVTLYACDSKSEYQKWECKNDTLFG 90
Score = 27.0 bits (59), Expect = 4.2
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 127 NLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGH 169
N ++C+D++ + T+ C+ SQ FR ++ Q+
Sbjct: 10 NEDHKRCVDALSAI---SVQTATCNPEAESQKFRWVSDSQIMS 49
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 33.6 bits (76), Expect = 0.047
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 26/169 (15%)
Query: 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSS-QLFRLNAEGQLGHG----------- 170
G ++ G CL + G TA + C+ + ++++ G + +
Sbjct: 56 GTIRSNG--SCLTTYGYTAGVYVMIFDCNTAVREATIWQIWGNGTIINPRSNLVLAASSG 113
Query: 171 --------ERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVD 222
+ Q L P + L G + + C ++G +
Sbjct: 114 IKGTTLTVQTLDYTLGQGWLAGNDTAPRETTIYGFRDLCMESAGGSVYVETC--TAGQEN 171
Query: 223 GPWRFHNSTRQLEHAILKRCLSVHPETN--QLAMLRCDENNSYQQWRFK 269
W + + +CL+ ++ + ++ C +S Q+W F
Sbjct: 172 QRWALYGDGSIRPKQLQSQCLTNGRDSISTVINIVSCSAGSSGQRWVFT 220
Score = 33.2 bits (75), Expect = 0.065
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 127 NLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGE--RCVDA 176
+CL + + VI C S Q + EG + + + +D
Sbjct: 185 KQLQSQCLTNGRDSISTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDV 236
Score = 33.2 bits (75), Expect = 0.073
Identities = 15/151 (9%), Positives = 33/151 (21%), Gaps = 36/151 (23%)
Query: 132 KCLDSMGRT----APAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQEKLVEMLK 187
+D + S + +QL+ + +G + C+
Sbjct: 20 MTVDVRDDDFHDGNQIQLWPSKSNN-DPNQLWTIKKDGTIRSNGSCLTTYGY-------- 70
Query: 188 LPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFH-NSTRQLEHAILKRCLSVH 246
G + +F+C + V + + + L+
Sbjct: 71 ----------------TAGVYVMIFDC---NTAVREATIWQIWGNGTIINPRSNLVLAAS 111
Query: 247 PETN--QLAMLRCDENNSYQQWRFKEVRPDW 275
L + D Q W
Sbjct: 112 SGIKGTTLTVQTLD-YTLGQGWLAGNDTAPR 141
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble
monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A
{Vibrio cholerae} PDB: 3o44_A
Length = 721
Score = 33.3 bits (75), Expect = 0.099
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 114 PELPPNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL---GHG 170
P NL N C+ + + + C S+Q F + G+ +
Sbjct: 462 GGRPVNLQLASFNNR----CIQVDAQ---GRLTANMCDSQQSAQSFIYDQLGRYVSASNT 514
Query: 171 ERCVDADKQEKL 182
+ C+D + L
Sbjct: 515 KLCLDGAALDAL 526
Score = 27.1 bits (59), Expect = 8.1
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL---GHGERCVD 39
+ A + + C S+Q F + G+ + + C+D
Sbjct: 478 IQVDAQGRLTANMCDSQQSAQSFIYDQLGRYVSASNTKLCLD 519
>1abr_B Abrin-A; glycosidase/carbohydrate complex, lectin, lectin
(agglutinin), glycoprotein, plant SEED protein, plant
toxin; HET: NDG NGZ MAN BMA BGC; 2.14A {Abrus
precatorius} SCOP: b.42.2.1 b.42.2.1 PDB: 2zr1_B*
2q3n_B*
Length = 267
Score = 32.4 bits (73), Expect = 0.14
Identities = 30/265 (11%), Positives = 69/265 (26%), Gaps = 57/265 (21%)
Query: 14 CHGSGSS-QLFRLNAEGQLGHGERCVDAD-----KQVISTQKSSLELRKRSSWLKVFKQI 67
C QL+ L ++ + +C+ V+ +S + I
Sbjct: 44 CKDRLEENQLWTLKSDKTIRSNGKCLTTYGYAPGSYVMIYDCTSAVAEATYWEIWDNGTI 103
Query: 68 RSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKN 127
+ S L + + + + ++ + W + T
Sbjct: 104 INPKSALVLSAESSSMGGTLTVQTNEYLMRQGWRTGNNTSPFVTSISGY----------- 152
Query: 128 LGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQ---LGHGERCVDADKQEKLVE 184
+ C+ + G + + C + Q + L +G + + C+ + ++
Sbjct: 153 --SDLCMQAQGSN----VWMADCDSNKKEQQWALYTDGSIRSVQNTNNCLTSKDHKQ--- 203
Query: 185 MLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLS 244
G+ + L C N G W F + + +
Sbjct: 204 ---------------------GSTILLMGCSN--GWASQRWVF-KNDGSIYSLYDDMVMD 239
Query: 245 VHPET---NQLAMLRCDENNSYQQW 266
V Q+ + Q W
Sbjct: 240 VKGSDPSLKQIILWPYT-GKPNQIW 263
Score = 31.7 bits (71), Expect = 0.25
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 132 KCLDSMG-RTAP-AVIGTSYCHGSGSS-QLFRLNAEGQLGHGERCVDA 176
C+D I C QL+ L ++ + +C+
Sbjct: 24 MCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSDKTIRSNGKCLTT 71
Score = 31.3 bits (70), Expect = 0.27
Identities = 18/149 (12%), Positives = 36/149 (24%), Gaps = 31/149 (20%)
Query: 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQ-LFRLNAEGQLGHGE--RCVDADKQ 179
++ G KCL + G + + C + + + + G + + + + A+
Sbjct: 60 KTIRSNG--KCLTTYGYAPGSYVMIYDCTSAVAEATYWEIWDNGTIINPKSALVLSAESS 117
Query: 180 EKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAIL 239
G L + +
Sbjct: 118 SM------------------------GGTLTVQTNEYLMRQGWRTGNNTSPFVTSISGYS 153
Query: 240 KRCLSVHPETNQLAMLRCDENNSYQQWRF 268
C+ +A CD N QQW
Sbjct: 154 DLCMQAQGSNVWMA--DCDSNKKEQQWAL 180
Score = 27.4 bits (60), Expect = 4.8
Identities = 17/149 (11%), Positives = 39/149 (26%), Gaps = 27/149 (18%)
Query: 122 WGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQEK 181
G N + L + + + +R +D
Sbjct: 100 NGTIINPKSALVLSAESSSMGGTLTVQTNEYLMRQG-WRTGNNTSPFVTSISGYSDL--- 155
Query: 182 LVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKR 241
C+ A G+ + + +C ++ S R +++
Sbjct: 156 -----------CMQAQ--------GSNVWMADCDSNKKEQQWALYTDGSIRSVQNTNN-- 194
Query: 242 CLSVHPETN--QLAMLRCDENNSYQQWRF 268
CL+ + ++ C + Q+W F
Sbjct: 195 CLTSKDHKQGSTILLMGCSNGWASQRWVF 223
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.44
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 13/37 (35%)
Query: 41 DKQVISTQKSSLELRKRSSWLKVFKQIRSLGSP-LAM 76
+KQ + ++SL+L S +P LA+
Sbjct: 18 EKQALKKLQASLKLYADDS------------APALAI 42
Score = 28.4 bits (62), Expect = 1.8
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 65 KQ-IRSLGSPLAMFLDMGDISEQVALR 90
KQ ++ L + L ++ D D + +A++
Sbjct: 19 KQALKKLQASLKLYAD--DSAPALAIK 43
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 29.6 bits (67), Expect = 0.97
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 15/64 (23%)
Query: 80 MGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNLGTQKC--LDSM 137
G I +V R F+ K + Y Y P+ + +G ++ ++ +
Sbjct: 172 AGRIGYRVLER----LVPFN--PKELLYYDYQALPK-------DAEEKVGARRVENIEEL 218
Query: 138 GRTA 141
A
Sbjct: 219 VAQA 222
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 28.1 bits (63), Expect = 3.8
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 162 NAEGQLGHGERCVDADKQEKLVEMLKLPVTFCVLAG--VKLIFC 203
+GQLG + + + L P + + I+
Sbjct: 206 AEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWA 249
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence,
DNA damage, genotoxin, cytotoxins, cell cycle,
apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP:
b.42.2.1 PDB: 2f2f_A
Length = 206
Score = 27.2 bits (59), Expect = 5.5
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 225 WRF----HNSTRQLEHAILKRCLSVHPETNQLAMLRCDENNSYQQWRF 268
W+ H + + L C+ + N L C + Q++
Sbjct: 99 WKMEPGKHREYFRFVNQSLGTCVEAY--GNGLIHDICSLDKLAQEFEL 144
>1osg_A Tumor necrosis factor ligand superfamily member 13B; jelly-roll,
beta hairpin, protein-peptide complex, immune system;
3.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 3v56_A
Length = 208
Score = 26.6 bits (58), Expect = 7.7
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 227 FHNSTRQLEHAILKRCLSVHP-ETNQLAMLRCDENNSYQQWR 267
+ + T + H I ++ + V E + + + RC +N
Sbjct: 124 YTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPN 165
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 26.9 bits (60), Expect = 7.8
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 18/58 (31%)
Query: 146 GTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQEKLVEMLKLPVTFCVLAGVKLIFC 203
G G G GQLG GE ++ K P + V
Sbjct: 27 GLVLTLGQGDV--------GQLGLGENVME----------RKKPALVSIPEDVVQAEA 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.428
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,168,460
Number of extensions: 229313
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 68
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)