RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11641
(277 letters)
>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
N-acetylgalactosaminyltransferase 1, C-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 131
Score = 74.5 bits (182), Expect = 2e-17
Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 32/160 (20%)
Query: 115 ELPP-NLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERC 173
++P GE +N+ T +CLD+M R +G CHG G +Q+F A ++ + C
Sbjct: 1 QIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLC 60
Query: 174 VDADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQ 233
+D K V MLK + W +
Sbjct: 61 LDVSKLNGPVTMLK----------------------------CHHLKGNQLWEYDPVKLT 92
Query: 234 LEHAILKRCLSVHPETN--QLAMLRCDENNSYQQWRFKEV 271
L+H +CL E + ++ C + QQW + V
Sbjct: 93 LQHVNSNQCLDKATEEDSQVPSIRDCT-GSRSQQWLLRNV 131
Score = 39.9 bits (92), Expect = 5e-05
Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 1 MGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQ---VISTQKSSLELRKR 57
M R +G CHG G +Q+F A ++ + C+D K V + L+ +
Sbjct: 24 MARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHHLKGNQL 83
Query: 58 SSWLKVFKQIRSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHV 105
+ V ++ + S + + S+ ++RD + W +++V
Sbjct: 84 WEYDPVKLTLQHVNSNQCLDKATEEDSQVPSIRDCTGSRSQQWLLRNV 131
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 63.4 bits (153), Expect = 3e-12
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 54 LRKRSSWLKVFKQIRSLGSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYD 108
R W+ FK + SP +D GDIS ++ LR KL CK FSW+++++ D
Sbjct: 273 RRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPD 327
>d1vcla2 b.42.2.1 (A:151-283) Hemolytic lectin CEL-III, domains 1
and 2 {Cucumaria echinata [TaxId: 40245]}
Length = 133
Score = 53.8 bits (128), Expect = 7e-10
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 34/158 (21%)
Query: 118 PNLFWGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDAD 177
P LF+G +N + CLD G + C Q FR G++ + + + D
Sbjct: 1 PELFYGRLRNEKSDLCLDVEGSDGKGNVLMYSCED-NLDQWFRYYENGEIVNAKSGMCLD 59
Query: 178 KQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHA 237
+ + ++ C D W N+ ++
Sbjct: 60 VEG----------------------SDGSGNVGIYRCD---DLRDQMWSRPNAYCNGDYC 94
Query: 238 ILK-----RCLSVHPETN--QLAMLRCDENNSYQQWRF 268
+CL V + + +CD Q++++
Sbjct: 95 SFLNKESNKCLDVSGDQGTGDVGTWQCD-GLPDQRFKW 131
>d1vcla1 b.42.2.1 (A:1-150) Hemolytic lectin CEL-III, domains 1 and
2 {Cucumaria echinata [TaxId: 40245]}
Length = 150
Score = 48.4 bits (114), Expect = 9e-08
Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 18/152 (11%)
Query: 122 WGEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL--GHGERCVDADKQ 179
GE ++ +++C+D +G I T C G Q + +G + C D
Sbjct: 10 IGELRSFKSKQCVDIVGNQGSGNIATYDCDGLS-DQQIIICGDGTIRNEARNYCFTPDGS 68
Query: 180 EKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAIL 239
V++ ++ + D ++ +
Sbjct: 69 ----------GNANVMSSPCTLYPE-IPSSQRWRQGRRKTFTDNGGIEQ-VATEIINLAS 116
Query: 240 KRCLSVHPETN--QLAMLRCDENNSYQQWRFK 269
+CL + + + C N Q + +
Sbjct: 117 GKCLDIEGSDGTGDIGVYDCQ-NLDDQYFYVR 147
Score = 34.5 bits (78), Expect = 0.006
Identities = 26/144 (18%), Positives = 38/144 (26%), Gaps = 7/144 (4%)
Query: 27 AEGQL--GHGERCVDADKQVIST---QKSSLELRKRSSWLKVFKQIRSLGSPLAMFLDMG 81
G+L ++CVD S L + + IR+ G
Sbjct: 9 DIGELRSFKSKQCVDIVGNQGSGNIATYDCDGLSDQQIIICGDGTIRNEARNYCF-TPDG 67
Query: 82 DISEQVALRDKLHCKDFSWFMKHVAYDVYTKFPELPPNLFWGEAKNLGTQKCLDSMGRTA 141
+ V + + T E NL + KCLD G
Sbjct: 68 SGNANVMSSPCTLYPEIPSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDG 127
Query: 142 PAVIGTSYCHGSGSSQLFRLNAEG 165
IG C Q F + + G
Sbjct: 128 TGDIGVYDCQN-LDDQYFYVRSRG 150
>d1knma_ b.42.2.1 (A:) Xylan binding domain, CBM13
(Endo-1,4-beta-xylanase C-terminal domain) {Streptomyces
lividans [TaxId: 1916]}
Length = 129
Score = 43.0 bits (100), Expect = 4e-06
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 35/157 (22%)
Query: 118 PNLFWGEAKNLGTQKCLDSMG--RTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVD 175
P G+ K +G+ +CLD + + CH + Q +A +G++C+D
Sbjct: 1 PPADGGQIKGVGSGRCLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLD 60
Query: 176 ADKQEKLVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLE 235
A G+ + +++C+ D NS +
Sbjct: 61 AAG------------------------TSNGSKVQIYSCWGG----DNQKWRLNSDGSVV 92
Query: 236 HAILKRCLSVHPET----NQLAMLRCDENNSYQQWRF 268
CL + + C N S Q+W
Sbjct: 93 GVQSGLCLDAVGNGTANGTLIQLYTCS-NGSNQRWTR 128
>d1ggpb1 b.42.2.1 (B:11-140) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 126
Score = 40.2 bits (93), Expect = 5e-05
Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 30/139 (21%)
Query: 132 KCLDSMGRTAP-AVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQEKLVEMLKLPV 190
C D G A I C + +QL+ L E + C+ E
Sbjct: 14 FCADVNGEGQNGAAIILKKCAEND-NQLWTLKREATIRSNGGCLTTAAAE---------- 62
Query: 191 TFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPETN 250
+++C ++ + + + LS +
Sbjct: 63 ---------------QAKAGIYDCTQATAELS--AWEIADNGTIINPASSLVLSSGAANS 105
Query: 251 Q-LAMLRCDENNSYQQWRF 268
++ + S Q WR
Sbjct: 106 LLDLGVQTNSYASAQGWRT 124
Score = 24.8 bits (53), Expect = 7.6
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRL 161
G N + L S + +G + S+Q +R
Sbjct: 87 GTIINPASSLVLSSGAANSLLDLGVQTNSYA-SAQGWRT 124
>d1dqga_ b.42.2.2 (A:) Mannose receptor {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 134
Score = 34.1 bits (77), Expect = 0.005
Identities = 13/142 (9%), Positives = 36/142 (25%), Gaps = 29/142 (20%)
Query: 126 KNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQEKLVEM 185
N ++C+D++ + T+ C+ SQ FR ++ Q+ +
Sbjct: 8 YNEDHKRCVDALSAI---SVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLG-------- 56
Query: 186 LKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSV 245
+ + C + + + +
Sbjct: 57 -----VPSKTDWASVTL---------YAC---DSKSEYQKWECKNDTLFGIKGTELYFNY 99
Query: 246 HPETNQLAMLRCDENNSYQQWR 267
+ L + + +W+
Sbjct: 100 GNRQEKNIKLYKG-SGLWSRWK 120
>d1abrb1 b.42.2.1 (B:1-140) Plant cytotoxin B-chain (lectin) {Abrus
precatorius [TaxId: 3816]}
Length = 140
Score = 34.1 bits (77), Expect = 0.006
Identities = 16/142 (11%), Positives = 38/142 (26%), Gaps = 32/142 (22%)
Query: 132 KCLDSMG--RTAPAVIGTSYCHG-SGSSQLFRLNAEGQLGHGERCVDADKQEKLVEMLKL 188
C+D I C +QL+ L ++ + +C+
Sbjct: 24 MCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSDKTIRSNGKCLTTYGYAP------- 76
Query: 189 PVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPE 248
G+ + +++C ++ + + + + LS
Sbjct: 77 -----------------GSYVMIYDCTSAVA--EATYWEIWDNGTIINPKSALVLSAESS 117
Query: 249 TN--QLAMLRCDENNSYQQWRF 268
+ L + + Q WR
Sbjct: 118 SMGGTLTVQTNE-YLMRQGWRT 138
>d2aaib2 b.42.2.1 (B:136-262) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 127
Score = 30.2 bits (67), Expect = 0.10
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 34/140 (24%)
Query: 131 QKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQL-GHGERCVDADKQEKLVEMLKLP 189
CL + + C + Q + L A+G + R
Sbjct: 14 GLCLQANS----GQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDS--------- 60
Query: 190 VTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTRQLEHAILKRCLSVHPET 249
TV+ + +C +S G + + + L V
Sbjct: 61 -------------NIRETVVKILSCGPAS---SGQRWMFKNDGTILNLYSGLVLDVRASD 104
Query: 250 ---NQLAMLRCDENNSYQQW 266
Q+ + + Q W
Sbjct: 105 PSLKQIILYPLH-GDPNQIW 123
>d1ggpb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 128
Score = 27.1 bits (59), Expect = 1.4
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 241 RCLSVHPETNQLAMLRCDENNSYQQWRF 268
C+ L M C + QQW
Sbjct: 15 LCMQAGNGPANLWMSECRAGKAEQQWAL 42
>d1tm0a_ d.21.1.3 (A:) Proline racemase {Brucella melitensis [TaxId:
29459]}
Length = 332
Score = 27.9 bits (62), Expect = 1.5
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 6/105 (5%)
Query: 76 MFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVY-TKFPELPPN-----LFWGEAKNLG 129
+ +D I ++ + + A + + PE G
Sbjct: 175 VIVDAAQIGMKIEPGQARELAEIGVKITKAANEQLGFRHPERDWRHISFCQITEPVTREG 234
Query: 130 TQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCV 174
+ PA S S+++ L+A+GQ+ GER +
Sbjct: 235 DVLTGVNTVAIRPAKFDRSPTGTGCSARMAVLHAKGQMKAGERFI 279
Score = 25.6 bits (56), Expect = 8.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 5 APAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCV 38
PA S S+++ L+A+GQ+ GER +
Sbjct: 246 RPAKFDRSPTGTGCSARMAVLHAKGQMKAGERFI 279
>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain
{Fairy-ring mushroom (Marasmius oreades) [TaxId:
181124]}
Length = 154
Score = 26.8 bits (58), Expect = 1.9
Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 28/159 (17%)
Query: 126 KNLGTQKCLD----SMGRTAPAVIGTSYCHGSGSSQLFRLNAEGQLGHGERCVDADKQEK 181
+N G +D S P V QL+ + +
Sbjct: 10 ENAGVPSAIDLKDGSSSDGTPIVGWQFTPDTINWHQLWLAEPIPNVADTFTLCNLFSGTY 69
Query: 182 LVEMLKLPVTFCVLAGVKLIFCRLGTVLNLFNCFNSSGTVDGPWRFHNSTR----QLEHA 237
+ GT +N + + W S+ ++++
Sbjct: 70 MDLYNGSSEA--------------GTAVNGWQGTAFTTNPHQLWTIKKSSDGTSYKIQNY 115
Query: 238 ILKRCLSVHPETN------QLAMLRCDENNSYQQWRFKE 270
K + + + DE N +Q+W F
Sbjct: 116 GSKTFVDLVNGDSSDGAKIAGWTGTWDEGNPHQKWYFNR 154
>d1hwmb2 b.42.2.1 (B:136-266) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 131
Score = 26.4 bits (57), Expect = 2.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 241 RCLSVHPETNQLAMLRCDENNSYQQWRF 268
CL + E N + M CD + QQW
Sbjct: 15 MCLQANGENNNVWMEDCDVTSVQQQWAL 42
>d1hwmb1 b.42.2.1 (B:3-135) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 133
Score = 25.3 bits (54), Expect = 6.3
Identities = 4/40 (10%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 123 GEAKNLGTQKCLDSMGRTAPAVIGTSYCHGSGSSQLFRLN 162
G N + + + + + +SQ + ++
Sbjct: 94 GSIINPSSGLVMTAPSGASRTTLLLENNIH-AASQGWTVS 132
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 25.0 bits (54), Expect = 6.5
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 71 GSPLAMFLDMGDISEQVALRDKLHCKDFSWFMKHVAYDVYTKF 113
GS A L M + ++ L D + + + +T+
Sbjct: 12 GSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRR 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.428
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,039,163
Number of extensions: 44952
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 27
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)