BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11642
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 310 bits (795), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 216/342 (63%), Gaps = 14/342 (4%)
Query: 31 YHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVF 90
Y + +A R D + E G N+ S+ IS +R++PD+R C Y LP S+I+ F
Sbjct: 63 YPMTDAERV--DQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPF 120
Query: 91 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT 150
HNEG+SSL+RTVHS++ R+P + + EI+LVDDFS + L + LEDY+ F VR++R
Sbjct: 121 HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPS-VRILRTK 179
Query: 151 EREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ 210
+REGLIRTR GA + G+VI FLD+HCE +NWLPPLL I +RK + P+ID ID+
Sbjct: 180 KREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHD 239
Query: 211 TWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAF 270
+FR + RG F+W M YK +P K S+P++SP AGGLFA+DR +
Sbjct: 240 --DFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADP--SDPFESPVMAGGLFAVDRKW 295
Query: 271 FLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVK 330
F ELGGYDPGL +WGGE +E+SFK+WMCGG +E +PCSR+GH+YR ++PY
Sbjct: 296 FWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKV------PA 349
Query: 331 GPLITYNYKRVIETWFDEKHKAYFYTREPLAMFLDMGDISEQ 372
G + N KRV E W DE + Y Y R P L GD++ Q
Sbjct: 350 GVSLARNLKRVAEVWMDE-YAEYIYQRRPEYRHLSAGDVAVQ 390
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/319 (46%), Positives = 206/319 (64%), Gaps = 9/319 (2%)
Query: 55 SNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYL 114
S I+ +R++PD+R+E CK YP +LP SV++VFHNE +S+L+RTVHS+I R+P +
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMI 61
Query: 115 EEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFL 174
EEI+LVDD S + L + LE Y+++ V +IR +R GLIR R +GA SRG+VI FL
Sbjct: 62 EEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFL 121
Query: 175 DAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 234
DAHCE WL PLLA I DR+ + P+ID I T+E+ + D Y G F W + +
Sbjct: 122 DAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMA--GSDMTYGG-FNWKLNF 178
Query: 235 KENELPEREAKKRKYN-SEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSF 293
+ +P+RE +RK + + P ++PT AGGLF++DR +F E+G YD G+ +WGGEN E+SF
Sbjct: 179 RWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISF 238
Query: 294 KIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAY 353
+IW CGG++E V CS +GHV+R PY F G +I N +R+ E W DE K +
Sbjct: 239 RIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGT----GQIINKNNRRLAEVWMDE-FKNF 293
Query: 354 FYTREPLAMFLDMGDISEQ 372
FY P +D GDIS +
Sbjct: 294 FYIISPGVTKVDYGDISSR 312
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 198/323 (61%), Gaps = 14/323 (4%)
Query: 51 NMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTP 110
N S+ + DR IPD R ++C+ + +DLP SV++ FHNE S+L+RTV S++K++P
Sbjct: 35 NQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSP 94
Query: 111 AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEV 170
++EIILVDD+S+ + D L I+ KVR++RN REGL+R+R RGA ++ +V
Sbjct: 95 PHLIKEIILVDDYSNDPE-DGALLGKIE----KVRVLRNDRREGLMRSRVRGADAAQAKV 149
Query: 171 IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEW 230
+ FLD+HCE +WL PLL + DR + P+ID I+ +++ +G F+W
Sbjct: 150 LTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGA---SADLKGGFDW 206
Query: 231 GMLYKENELPEREAKKRKYNS-EPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF 289
+++K + + + + R+ N P K+P AGGLF MD+ +F ELG YD + VWGGEN
Sbjct: 207 NLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENL 266
Query: 290 ELSFKIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVKGPLITYNYKRVIETWFDEK 349
E+SF++W CGGS+E +PCSR+GHV+R PY F + G + N +R E W DE
Sbjct: 267 EISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGS----GTVFARNTRRAAEVWMDE- 321
Query: 350 HKAYFYTREPLAMFLDMGDISEQ 372
+K ++Y P A + G+I +
Sbjct: 322 YKNFYYAAVPSARNVPYGNIQSR 344
>pdb|4ETQ|H Chain H, Vaccinia Virus D8l Imv Envelope Protein In Complex With
Fab Of Murine Igg2a La5
pdb|4ETQ|A Chain A, Vaccinia Virus D8l Imv Envelope Protein In Complex With
Fab Of Murine Igg2a La5
Length = 221
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED 135
P ASV + G+S +H +K+ P Q LE I ++D S++ L+QK +D
Sbjct: 14 PGASVKISCKASGYSFNFYWMH-WVKQRPGQGLEWIGMIDPSESESRLNQKFKD 66
>pdb|4EBQ|H Chain H, Fab Structure Of Anti-Vaccinia Virus D8l Antigen Mouse
Igg2a La5
Length = 221
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED 135
P ASV + G+S +H +K+ P Q LE I ++D S++ L+QK +D
Sbjct: 14 PGASVKISCKASGYSFNFYWMH-WVKQRPGQGLEWIGMIDPSESESRLNQKFKD 66
>pdb|2YNM|C Chain C, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 426
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 98 LMRTVHSIIKRTPAQYLEEIILVDDFSS---KADLDQKLEDYIQRFNGKVRLIRNTEREG 154
L R V S++KR P + + LV S K DL + E +FNG+VR++ N G
Sbjct: 88 LDRVVKSLLKRRPE--IRTLFLVGSCPSEVIKIDLSRAAERLSSQFNGQVRIL-NYSGSG 144
Query: 155 LIRTRSRG 162
+ T ++G
Sbjct: 145 IETTFTQG 152
>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NHE|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
Length = 286
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 261 GGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIE 303
GG+ A+ + FL + G+ WGGE+ ++ ++ G S+
Sbjct: 175 GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGXSVS 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,947,825
Number of Sequences: 62578
Number of extensions: 518222
Number of successful extensions: 941
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 11
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)