Query psy11642
Match_columns 372
No_of_seqs 345 out of 3000
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 15:15:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3737|consensus 100.0 8.9E-83 1.9E-87 562.0 19.2 370 1-372 74-445 (603)
2 KOG3736|consensus 100.0 2.8E-70 6.2E-75 520.0 15.4 343 19-372 79-422 (578)
3 KOG3738|consensus 100.0 7.4E-67 1.6E-71 461.9 10.5 323 36-371 78-400 (559)
4 cd02510 pp-GalNAc-T pp-GalNAc- 100.0 7.8E-48 1.7E-52 354.4 25.4 277 85-372 1-279 (299)
5 cd02520 Glucosylceramide_synth 100.0 1.1E-31 2.5E-36 231.8 17.4 173 82-313 1-177 (196)
6 cd06437 CESA_CaSu_A2 Cellulose 100.0 4.5E-31 9.7E-36 234.1 20.2 212 82-316 1-216 (232)
7 cd04184 GT2_RfbC_Mx_like Myxoc 100.0 8.2E-31 1.8E-35 227.2 17.7 198 82-311 1-199 (202)
8 cd06427 CESA_like_2 CESA_like_ 100.0 8.7E-31 1.9E-35 233.7 16.5 230 82-354 1-234 (241)
9 COG1216 Predicted glycosyltran 100.0 4.9E-30 1.1E-34 236.3 19.9 221 81-319 2-226 (305)
10 PRK11204 N-glycosyltransferase 100.0 5E-30 1.1E-34 247.1 17.3 211 79-315 51-262 (420)
11 cd06435 CESA_NdvC_like NdvC_li 100.0 8E-30 1.7E-34 226.6 16.8 206 85-313 1-209 (236)
12 cd04195 GT2_AmsE_like GT2_AmsE 100.0 1.3E-29 2.8E-34 219.6 17.1 198 85-312 1-200 (201)
13 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 2.6E-29 5.7E-34 242.3 19.0 221 79-314 46-268 (439)
14 cd06421 CESA_CelA_like CESA_Ce 100.0 2.6E-29 5.5E-34 222.8 16.8 209 82-313 1-211 (234)
15 cd06913 beta3GnTL1_like Beta 1 100.0 3E-29 6.5E-34 220.5 17.0 206 86-315 1-211 (219)
16 PF13641 Glyco_tranf_2_3: Glyc 100.0 2.3E-29 4.9E-34 222.5 15.6 208 82-315 1-212 (228)
17 PRK14583 hmsR N-glycosyltransf 100.0 6.5E-29 1.4E-33 240.2 19.5 209 80-314 73-282 (444)
18 cd06420 GT2_Chondriotin_Pol_N 100.0 1.2E-28 2.5E-33 210.1 18.2 180 86-314 1-182 (182)
19 cd04185 GT_2_like_b Subfamily 100.0 1.4E-28 2.9E-33 213.4 16.7 174 86-317 1-177 (202)
20 cd02525 Succinoglycan_BP_ExoA 100.0 3.1E-28 6.8E-33 217.7 18.2 210 83-315 1-210 (249)
21 TIGR03469 HonB hopene-associat 100.0 1.2E-28 2.6E-33 233.9 15.1 213 79-311 37-260 (384)
22 TIGR03472 HpnI hopanoid biosyn 100.0 4.3E-28 9.2E-33 229.5 18.7 211 79-312 38-252 (373)
23 cd06433 GT_2_WfgS_like WfgS an 100.0 5E-28 1.1E-32 209.0 17.1 196 85-316 1-197 (202)
24 PRK10018 putative glycosyl tra 100.0 3.4E-27 7.4E-32 213.1 21.6 205 80-316 3-210 (279)
25 TIGR01556 rhamnosyltran L-rham 100.0 1.1E-27 2.4E-32 218.5 18.6 227 89-344 1-238 (281)
26 PRK10073 putative glycosyl tra 100.0 3.1E-27 6.7E-32 219.1 20.8 213 80-315 4-218 (328)
27 cd04186 GT_2_like_c Subfamily 100.0 1.1E-27 2.4E-32 200.4 16.0 165 86-313 1-165 (166)
28 cd04192 GT_2_like_e Subfamily 100.0 6.5E-28 1.4E-32 212.9 15.4 203 86-311 1-207 (229)
29 cd06439 CESA_like_1 CESA_like_ 100.0 1.7E-27 3.6E-32 213.7 18.1 207 79-316 26-232 (251)
30 cd02526 GT2_RfbF_like RfbF is 100.0 1.7E-27 3.6E-32 211.7 17.8 201 86-317 1-208 (237)
31 PF10111 Glyco_tranf_2_2: Glyc 100.0 1.4E-27 3E-32 217.3 16.5 212 85-316 1-225 (281)
32 PLN02726 dolichyl-phosphate be 100.0 1.6E-27 3.4E-32 212.9 16.3 216 79-317 6-222 (243)
33 cd06442 DPM1_like DPM1_like re 100.0 2.7E-27 5.8E-32 208.5 16.2 203 86-316 1-206 (224)
34 cd04196 GT_2_like_d Subfamily 100.0 2.9E-27 6.3E-32 206.5 16.0 202 85-313 1-203 (214)
35 PRK11498 bcsA cellulose syntha 99.9 5E-27 1.1E-31 236.7 17.7 210 79-312 257-468 (852)
36 cd02522 GT_2_like_a GT_2_like_ 99.9 1.7E-26 3.8E-31 202.9 17.8 185 84-312 1-185 (221)
37 TIGR03030 CelA cellulose synth 99.9 2.6E-26 5.7E-31 232.7 19.6 215 79-313 128-358 (713)
38 PRK10063 putative glycosyl tra 99.9 8.4E-26 1.8E-30 201.5 20.6 192 82-312 1-195 (248)
39 cd06434 GT2_HAS Hyaluronan syn 99.9 1.3E-25 2.7E-30 199.4 15.6 205 83-313 1-213 (235)
40 COG1215 Glycosyltransferases, 99.9 2.4E-24 5.2E-29 208.9 19.0 210 81-311 53-263 (439)
41 PF00535 Glycos_transf_2: Glyc 99.9 1.6E-24 3.4E-29 181.2 11.8 169 85-275 1-169 (169)
42 cd04188 DPG_synthase DPG_synth 99.9 1.3E-24 2.8E-29 189.8 11.7 200 86-307 1-202 (211)
43 cd06423 CESA_like CESA_like is 99.9 5.4E-24 1.2E-28 178.9 12.8 179 86-288 1-180 (180)
44 cd04179 DPM_DPG-synthase_like 99.9 1.5E-23 3.3E-28 178.9 9.5 182 86-295 1-185 (185)
45 cd06438 EpsO_like EpsO protein 99.9 5.5E-23 1.2E-27 175.5 11.3 178 86-291 1-183 (183)
46 cd04190 Chitin_synth_C C-termi 99.9 6.1E-23 1.3E-27 183.2 11.0 185 86-313 1-222 (244)
47 cd04187 DPM1_like_bac Bacteria 99.9 6.1E-23 1.3E-27 174.8 10.0 177 86-294 1-180 (181)
48 PRK14716 bacteriophage N4 adso 99.9 1.3E-21 2.9E-26 188.7 17.0 207 79-311 63-287 (504)
49 PTZ00260 dolichyl-phosphate be 99.9 2E-21 4.4E-26 180.4 15.0 209 79-308 67-287 (333)
50 cd04191 Glucan_BSP_ModH Glucan 99.9 6.9E-21 1.5E-25 169.8 14.4 208 84-310 1-228 (254)
51 PRK13915 putative glucosyl-3-p 99.9 6.8E-21 1.5E-25 174.5 13.7 207 80-308 29-240 (306)
52 cd06436 GlcNAc-1-P_transferase 99.8 5.5E-21 1.2E-25 164.2 10.8 110 86-202 1-124 (191)
53 KOG2978|consensus 99.8 4.8E-20 1E-24 148.7 14.7 209 82-317 3-217 (238)
54 PRK10714 undecaprenyl phosphat 99.8 8E-20 1.7E-24 169.2 13.8 118 80-202 4-124 (325)
55 PRK11234 nfrB bacteriophage N4 99.8 1.2E-18 2.5E-23 175.0 14.7 205 79-309 60-282 (727)
56 cd00761 Glyco_tranf_GTA_type G 99.8 1.1E-17 2.5E-22 136.8 15.2 153 86-302 1-154 (156)
57 cd02511 Beta4Glucosyltransfera 99.8 7.7E-18 1.7E-22 148.9 12.5 101 83-197 1-101 (229)
58 PRK05454 glucosyltransferase M 99.7 3.2E-17 6.9E-22 163.8 16.8 212 79-308 121-351 (691)
59 COG0463 WcaA Glycosyltransfera 99.7 3.6E-17 7.9E-22 141.9 11.6 107 81-193 2-108 (291)
60 PRK15489 nfrB bacteriophage N4 99.7 8.1E-17 1.8E-21 159.8 15.1 195 79-304 68-285 (703)
61 PF13712 Glyco_tranf_2_5: Glyc 99.6 1.7E-15 3.7E-20 131.8 11.4 207 84-345 1-217 (217)
62 cd02514 GT13_GLCNAC-TI GT13_GL 99.5 1.6E-13 3.4E-18 125.5 15.0 189 84-317 2-213 (334)
63 cd00899 b4GalT Beta-4-Galactos 99.5 1.1E-12 2.4E-17 112.1 14.6 161 83-318 3-172 (219)
64 KOG2977|consensus 99.5 7.5E-13 1.6E-17 114.4 11.6 204 83-306 68-282 (323)
65 PF13506 Glyco_transf_21: Glyc 99.3 5.1E-12 1.1E-16 106.4 5.3 143 146-311 6-152 (175)
66 PF13632 Glyco_trans_2_3: Glyc 99.3 3E-11 6.5E-16 103.7 10.2 124 170-313 1-124 (193)
67 KOG3588|consensus 99.2 1.9E-10 4E-15 102.8 14.0 212 79-317 226-441 (494)
68 PF02709 Glyco_transf_7C: N-te 99.1 3.6E-11 7.9E-16 86.3 2.9 59 256-314 16-75 (78)
69 KOG2547|consensus 99.1 5.4E-09 1.2E-13 94.0 14.4 204 79-305 82-289 (431)
70 COG4092 Predicted glycosyltran 99.0 3.2E-09 7E-14 91.0 11.9 198 81-298 1-216 (346)
71 PF05679 CHGN: Chondroitin N-a 99.0 3.8E-08 8.2E-13 96.2 19.1 214 80-318 245-472 (499)
72 KOG3916|consensus 98.8 6.9E-08 1.5E-12 86.1 13.1 159 67-306 142-307 (372)
73 PLN02893 Cellulose synthase-li 98.7 5.9E-07 1.3E-11 89.5 17.5 52 79-130 98-152 (734)
74 PF03142 Chitin_synth_2: Chiti 98.7 6.4E-07 1.4E-11 86.8 15.3 212 82-311 25-353 (527)
75 PF11397 GlcNAc: Glycosyltrans 98.7 1.1E-06 2.5E-11 81.2 15.8 225 84-316 2-265 (343)
76 PF03071 GNT-I: GNT-I family; 98.6 2.2E-07 4.8E-12 87.4 10.7 194 79-317 90-308 (434)
77 PF13704 Glyco_tranf_2_4: Glyc 98.0 4.4E-05 9.5E-10 57.5 8.7 83 91-184 1-88 (97)
78 PF03452 Anp1: Anp1; InterPro 97.9 0.00014 3E-09 64.5 11.4 121 79-205 22-177 (269)
79 COG2943 MdoH Membrane glycosyl 97.6 0.00078 1.7E-08 64.1 11.0 206 82-307 144-370 (736)
80 PLN02189 cellulose synthase 97.6 0.0032 6.9E-08 65.3 16.2 52 79-130 328-382 (1040)
81 PLN02195 cellulose synthase A 97.5 0.002 4.4E-08 66.3 14.2 52 79-130 249-303 (977)
82 PF13896 Glyco_transf_49: Glyc 97.3 0.0011 2.4E-08 61.2 8.6 160 153-316 113-285 (317)
83 KOG3917|consensus 97.2 0.00083 1.8E-08 56.8 6.3 149 79-304 71-226 (310)
84 TIGR02460 osmo_MPGsynth mannos 97.2 0.011 2.3E-07 53.7 13.4 105 82-194 50-185 (381)
85 PF09488 Osmo_MPGsynth: Mannos 97.1 0.0033 7.1E-08 57.3 9.0 103 82-191 50-182 (381)
86 PF11735 CAP59_mtransfer: Cryp 96.9 0.028 6E-07 49.5 13.1 200 86-299 4-241 (241)
87 PF11316 Rhamno_transf: Putati 96.9 0.0071 1.5E-07 53.2 9.3 90 100-193 46-140 (234)
88 PF06306 CgtA: Beta-1,4-N-acet 96.9 0.0085 1.9E-07 53.8 9.6 118 83-207 88-215 (347)
89 PLN02638 cellulose synthase A 96.9 0.01 2.2E-07 61.9 11.3 52 79-130 346-400 (1079)
90 PF09258 Glyco_transf_64: Glyc 96.7 0.0048 1E-07 54.9 7.2 108 84-201 1-109 (247)
91 PRK14503 mannosyl-3-phosphogly 96.7 0.013 2.7E-07 53.6 9.7 105 82-194 51-186 (393)
92 KOG2571|consensus 96.7 0.014 3E-07 59.6 10.8 124 168-312 441-577 (862)
93 KOG1413|consensus 96.5 0.027 5.8E-07 51.3 10.2 185 80-308 65-274 (411)
94 PF01762 Galactosyl_T: Galacto 96.5 0.026 5.6E-07 48.3 10.0 178 96-303 4-192 (195)
95 cd00218 GlcAT-I Beta1,3-glucur 96.2 0.035 7.5E-07 47.9 9.0 99 82-189 1-117 (223)
96 PRK15480 glucose-1-phosphate t 96.2 0.54 1.2E-05 43.0 17.0 100 87-197 28-131 (292)
97 cd06915 NTP_transferase_WcbM_l 96.1 0.63 1.4E-05 40.3 16.8 101 87-199 23-126 (223)
98 PF03214 RGP: Reversibly glyco 96.1 0.013 2.9E-07 52.9 5.9 113 83-202 9-126 (348)
99 COG1209 RfbA dTDP-glucose pyro 96.0 0.93 2E-05 40.3 16.8 188 87-308 25-216 (286)
100 PLN02458 transferase, transfer 95.8 0.056 1.2E-06 49.0 8.7 103 79-188 109-223 (346)
101 PLN02917 CMP-KDO synthetase 95.7 0.61 1.3E-05 42.7 15.1 184 96-306 73-266 (293)
102 PRK14502 bifunctional mannosyl 95.6 0.08 1.7E-06 53.3 9.8 105 82-194 55-190 (694)
103 cd06425 M1P_guanylylT_B_like_N 95.5 0.3 6.5E-06 42.9 12.4 104 87-198 25-130 (233)
104 PF00483 NTP_transferase: Nucl 95.3 0.14 2.9E-06 45.5 9.5 188 87-304 24-220 (248)
105 KOG1476|consensus 95.3 0.18 4E-06 45.3 9.8 99 81-187 86-201 (330)
106 TIGR00466 kdsB 3-deoxy-D-manno 95.2 1.9 4E-05 38.2 16.4 191 88-306 19-222 (238)
107 cd06428 M1P_guanylylT_A_like_N 95.2 0.47 1E-05 42.4 12.8 105 87-198 25-132 (257)
108 PF13733 Glyco_transf_7N: N-te 95.2 0.093 2E-06 41.5 7.0 74 83-184 48-128 (136)
109 TIGR01207 rmlA glucose-1-phosp 95.2 1.5 3.3E-05 39.9 16.0 99 87-196 24-126 (286)
110 PF04666 Glyco_transf_54: N-Ac 95.1 0.11 2.3E-06 47.4 8.0 114 81-196 51-198 (297)
111 COG1208 GCD1 Nucleoside-diphos 94.9 2.7 6E-05 39.6 17.4 98 87-196 26-126 (358)
112 cd02538 G1P_TT_short G1P_TT_sh 94.8 2.2 4.8E-05 37.5 15.9 97 88-194 26-125 (240)
113 PF12804 NTP_transf_3: MobA-li 94.8 0.14 2.9E-06 42.1 7.5 102 88-204 19-123 (160)
114 PRK00317 mobA molybdopterin-gu 94.8 0.29 6.3E-06 41.6 9.7 92 92-200 28-122 (193)
115 COG1213 Predicted sugar nucleo 94.7 0.066 1.4E-06 46.4 5.3 88 96-192 32-121 (239)
116 PF05060 MGAT2: N-acetylglucos 94.6 0.53 1.2E-05 43.7 11.3 55 262-316 234-293 (356)
117 cd04182 GT_2_like_f GT_2_like_ 94.5 0.45 9.7E-06 39.9 10.2 98 96-204 27-128 (186)
118 cd04181 NTP_transferase NTP_tr 94.4 0.84 1.8E-05 39.3 12.0 99 88-198 24-125 (217)
119 PLN02248 cellulose synthase-li 94.4 0.23 5E-06 52.3 9.4 48 79-126 364-414 (1135)
120 TIGR03310 matur_ygfJ molybdenu 94.3 0.43 9.4E-06 40.2 9.6 105 88-204 20-127 (188)
121 cd02540 GT2_GlmU_N_bac N-termi 94.1 0.68 1.5E-05 40.4 10.8 102 87-201 20-124 (229)
122 cd02517 CMP-KDO-Synthetase CMP 94.1 3.4 7.3E-05 36.3 15.3 94 87-195 20-118 (239)
123 cd02513 CMP-NeuAc_Synthase CMP 94.1 2 4.3E-05 37.2 13.7 99 96-204 27-135 (223)
124 COG2068 Uncharacterized MobA-r 93.9 2 4.4E-05 36.5 12.4 102 96-208 32-137 (199)
125 TIGR03584 PseF pseudaminic aci 93.8 1.7 3.8E-05 37.9 12.6 98 96-203 25-131 (222)
126 TIGR03202 pucB xanthine dehydr 93.7 1 2.2E-05 38.2 10.8 104 92-203 24-132 (190)
127 cd02503 MobA MobA catalyzes th 93.4 0.66 1.4E-05 38.9 9.1 90 96-202 27-118 (181)
128 KOG1022|consensus 93.4 0.52 1.1E-05 45.4 9.0 117 79-204 440-558 (691)
129 cd04189 G1P_TT_long G1P_TT_lon 93.2 5.3 0.00012 34.9 18.8 99 87-197 25-126 (236)
130 PLN02190 cellulose synthase-li 93.0 0.24 5.1E-06 50.3 6.4 56 80-135 91-149 (756)
131 cd06422 NTP_transferase_like_1 93.0 1.6 3.6E-05 37.8 11.2 95 87-193 24-121 (221)
132 PRK05450 3-deoxy-manno-octulos 92.8 6.4 0.00014 34.7 16.9 100 88-200 22-124 (245)
133 cd06431 GT8_LARGE_C LARGE cata 92.8 1.8 3.9E-05 39.3 11.4 104 83-191 2-120 (280)
134 TIGR01208 rmlA_long glucose-1- 92.4 9.6 0.00021 35.8 18.1 99 88-197 25-126 (353)
135 cd06426 NTP_transferase_like_2 92.4 6.6 0.00014 33.8 16.2 102 87-201 23-127 (220)
136 cd00505 Glyco_transf_8 Members 91.6 3.2 7E-05 36.8 11.6 111 86-200 3-127 (246)
137 cd02508 ADP_Glucose_PP ADP-glu 91.6 3.2 6.9E-05 35.4 11.1 102 87-199 23-141 (200)
138 cd02518 GT2_SpsF SpsF is a gly 91.4 2.1 4.5E-05 37.6 10.0 103 87-200 18-121 (233)
139 cd02509 GDP-M1P_Guanylyltransf 91.2 3.3 7.2E-05 37.4 11.3 88 87-182 26-117 (274)
140 PF01697 Glyco_transf_92: Glyc 91.0 2 4.4E-05 38.8 9.8 107 84-197 3-137 (285)
141 KOG4179|consensus 90.8 0.51 1.1E-05 44.0 5.5 108 82-191 3-134 (568)
142 TIGR02665 molyb_mobA molybdopt 90.7 2.1 4.6E-05 35.9 9.1 90 96-199 28-120 (186)
143 PRK13368 3-deoxy-manno-octulos 90.6 2.6 5.6E-05 37.0 9.9 90 96-196 28-118 (238)
144 cd02516 CDP-ME_synthetase CDP- 90.6 1.9 4.2E-05 37.2 9.0 100 87-197 22-126 (218)
145 TIGR03552 F420_cofC 2-phospho- 90.6 2.2 4.9E-05 36.2 9.2 94 96-204 31-127 (195)
146 cd04198 eIF-2B_gamma_N The N-t 90.4 2.9 6.2E-05 36.2 9.8 103 87-201 25-133 (214)
147 PRK13385 2-C-methyl-D-erythrit 90.2 2.3 4.9E-05 37.3 9.1 94 96-198 31-129 (230)
148 PLN03180 reversibly glycosylat 89.9 0.41 8.8E-06 43.7 4.0 30 155-184 81-110 (346)
149 PRK02726 molybdopterin-guanine 89.7 2.7 5.9E-05 36.0 8.9 88 92-194 31-120 (200)
150 PRK14353 glmU bifunctional N-a 89.4 2.5 5.5E-05 41.1 9.6 98 87-195 27-127 (446)
151 PRK14352 glmU bifunctional N-a 88.8 4.9 0.00011 39.6 11.1 101 87-198 26-130 (482)
152 cd02523 PC_cytidylyltransferas 88.7 2.5 5.5E-05 36.8 8.2 91 87-190 23-115 (229)
153 PRK14355 glmU bifunctional N-a 88.4 2.9 6.3E-05 40.9 9.2 100 87-198 25-127 (459)
154 TIGR01105 galF UTP-glucose-1-p 88.2 6.1 0.00013 36.2 10.6 102 87-196 28-158 (297)
155 cd04183 GT2_BcE_like GT2_BcbE_ 88.1 7 0.00015 34.0 10.7 95 87-189 23-119 (231)
156 PLN02728 2-C-methyl-D-erythrit 87.8 5.6 0.00012 35.5 9.9 93 96-197 53-148 (252)
157 PRK14360 glmU bifunctional N-a 87.7 3 6.6E-05 40.6 8.9 101 87-199 23-126 (450)
158 PLN03153 hypothetical protein; 87.1 2 4.3E-05 41.9 6.9 48 258-306 261-313 (537)
159 cd02524 G1P_cytidylyltransfera 87.0 7.8 0.00017 34.4 10.4 45 152-197 101-146 (253)
160 PRK14358 glmU bifunctional N-a 86.9 6.5 0.00014 38.8 10.7 100 87-199 29-131 (481)
161 cd04194 GT8_A4GalT_like A4GalT 86.8 8.2 0.00018 34.1 10.5 102 86-190 3-117 (248)
162 PRK15171 lipopolysaccharide 1, 86.7 16 0.00034 34.1 12.6 107 82-191 24-143 (334)
163 cd02541 UGPase_prokaryotic Pro 86.3 8.4 0.00018 34.4 10.4 104 87-197 25-150 (267)
164 COG0746 MobA Molybdopterin-gua 86.3 4.1 8.9E-05 34.7 7.8 92 91-199 26-119 (192)
165 PF02434 Fringe: Fringe-like; 86.2 1.8 4E-05 38.6 5.9 108 167-306 86-203 (252)
166 PLN02190 cellulose synthase-li 86.1 4 8.6E-05 41.8 8.6 54 142-195 252-315 (756)
167 TIGR01173 glmU UDP-N-acetylglu 85.8 5.5 0.00012 38.7 9.5 97 87-196 22-120 (451)
168 PF01501 Glyco_transf_8: Glyco 85.6 2.9 6.2E-05 36.7 6.9 94 96-191 12-121 (250)
169 TIGR01099 galU UTP-glucose-1-p 85.5 11 0.00024 33.5 10.7 105 87-198 25-151 (260)
170 PF03360 Glyco_transf_43: Glyc 85.4 2.4 5.1E-05 36.5 5.8 69 116-187 12-97 (207)
171 COG1211 IspD 4-diphosphocytidy 85.3 16 0.00034 32.1 10.9 90 96-193 33-126 (230)
172 PRK14357 glmU bifunctional N-a 84.9 11 0.00023 36.7 11.1 99 87-200 22-122 (448)
173 cd06430 GT8_like_2 GT8_like_2 84.9 17 0.00036 33.4 11.3 104 84-192 3-120 (304)
174 PRK00155 ispD 2-C-methyl-D-ery 84.2 10 0.00022 33.0 9.7 93 96-197 32-126 (227)
175 PRK14356 glmU bifunctional N-a 84.1 5.7 0.00012 38.8 8.7 94 87-193 27-124 (456)
176 TIGR00453 ispD 2-C-methyl-D-er 83.9 11 0.00023 32.6 9.6 95 92-197 25-121 (217)
177 cd06432 GT8_HUGT1_C_like The C 83.5 22 0.00047 31.7 11.5 91 96-191 14-118 (248)
178 PRK14354 glmU bifunctional N-a 82.8 7 0.00015 38.1 8.8 96 87-196 24-122 (458)
179 KOG2264|consensus 82.5 2.1 4.6E-05 41.7 4.7 109 83-201 650-758 (907)
180 TIGR00454 conserved hypothetic 82.2 14 0.00031 31.0 9.4 97 87-197 21-119 (183)
181 PLN03133 beta-1,3-galactosyltr 82.0 54 0.0012 33.4 14.5 164 116-306 420-593 (636)
182 PRK09382 ispDF bifunctional 2- 81.6 11 0.00025 35.7 9.4 96 88-195 28-124 (378)
183 PRK14489 putative bifunctional 81.3 11 0.00025 35.6 9.3 96 92-202 30-128 (366)
184 PRK14490 putative bifunctional 80.9 14 0.0003 35.0 9.8 86 91-192 197-284 (369)
185 KOG2791|consensus 80.6 19 0.00042 33.1 9.8 54 262-317 318-378 (455)
186 PRK10122 GalU regulator GalF; 80.6 25 0.00054 32.2 11.1 103 87-197 28-159 (297)
187 PRK09451 glmU bifunctional N-a 80.5 11 0.00024 36.8 9.2 96 87-195 27-124 (456)
188 PLN03193 beta-1,3-galactosyltr 80.4 35 0.00076 32.5 11.9 170 116-312 179-355 (408)
189 PRK00576 molybdopterin-guanine 77.7 14 0.00029 30.8 7.8 87 96-199 16-107 (178)
190 TIGR02623 G1P_cyt_trans glucos 76.5 41 0.00089 29.9 11.0 102 87-197 24-146 (254)
191 PF05212 DUF707: Protein of un 76.2 60 0.0013 29.4 12.2 139 165-317 114-255 (294)
192 PLN02915 cellulose synthase A 75.3 6 0.00013 42.0 5.8 56 79-134 284-342 (1044)
193 PLN02436 cellulose synthase A 75.2 5.4 0.00012 42.4 5.4 56 79-134 362-420 (1094)
194 PF02348 CTP_transf_3: Cytidyl 75.2 31 0.00068 29.5 9.7 92 96-198 25-120 (217)
195 PLN02400 cellulose synthase 75.1 5.3 0.00011 42.6 5.4 56 79-134 353-411 (1085)
196 KOG1111|consensus 75.0 27 0.00058 32.7 9.2 55 90-149 205-259 (426)
197 PF03552 Cellulose_synt: Cellu 74.6 6.5 0.00014 40.1 5.7 55 142-196 166-230 (720)
198 PF11051 Mannosyl_trans3: Mann 73.6 24 0.00052 31.8 8.7 99 86-190 4-112 (271)
199 cd04197 eIF-2B_epsilon_N The N 72.5 61 0.0013 27.8 10.8 95 87-194 25-129 (217)
200 PLN02248 cellulose synthase-li 70.4 9.1 0.0002 41.0 5.8 40 155-194 603-647 (1135)
201 PRK13389 UTP--glucose-1-phosph 70.1 67 0.0015 29.5 11.0 104 87-197 33-164 (302)
202 PLN02436 cellulose synthase A 69.6 8.4 0.00018 41.1 5.3 53 142-194 532-594 (1094)
203 COG1207 GlmU N-acetylglucosami 65.4 58 0.0013 31.3 9.4 94 96-199 31-128 (460)
204 TIGR01479 GMP_PMI mannose-1-ph 63.5 43 0.00093 32.9 8.8 96 88-192 27-129 (468)
205 PF14097 SpoVAE: Stage V sporu 63.4 85 0.0018 26.0 10.9 87 117-207 2-92 (180)
206 TIGR02091 glgC glucose-1-phosp 62.5 47 0.001 31.2 8.7 101 87-197 23-139 (361)
207 PLN02400 cellulose synthase 62.5 14 0.00031 39.5 5.4 52 143-194 524-585 (1085)
208 PF01644 Chitin_synth_1: Chiti 61.8 78 0.0017 26.1 8.5 43 150-192 117-163 (163)
209 PF09837 DUF2064: Uncharacteri 61.1 44 0.00095 26.0 6.8 82 116-204 12-96 (122)
210 PF02485 Branch: Core-2/I-Bran 59.0 58 0.0013 28.6 8.2 105 84-195 1-115 (244)
211 PLN02915 cellulose synthase A 58.0 17 0.00036 38.9 4.9 53 142-194 454-516 (1044)
212 COG1210 GalU UDP-glucose pyrop 57.7 23 0.00049 31.8 5.1 59 142-200 97-157 (291)
213 KOG2288|consensus 56.0 28 0.0006 30.8 5.2 121 162-310 103-223 (274)
214 PRK00725 glgC glucose-1-phosph 55.9 1.1E+02 0.0023 29.7 10.0 101 87-198 40-158 (425)
215 cd02507 eIF-2B_gamma_N_like Th 55.5 90 0.0019 26.8 8.6 92 87-190 25-124 (216)
216 KOG1460|consensus 53.4 50 0.0011 30.1 6.5 96 97-198 37-136 (407)
217 PF07507 WavE: WavE lipopolysa 53.2 50 0.0011 30.5 6.8 40 155-194 83-122 (311)
218 PF01128 IspD: 2-C-methyl-D-er 52.8 99 0.0021 26.9 8.3 89 96-195 29-120 (221)
219 PRK14359 glmU bifunctional N-a 51.2 2.3E+02 0.005 27.2 17.7 89 87-189 24-115 (430)
220 COG1442 RfaJ Lipopolysaccharid 50.2 2.2E+02 0.0047 26.5 11.8 115 84-201 3-130 (325)
221 cd02515 Glyco_transf_6 Glycosy 49.8 98 0.0021 27.8 7.7 106 77-189 29-145 (271)
222 PRK00560 molybdopterin-guanine 49.8 1.2E+02 0.0026 25.6 8.4 79 92-190 32-114 (196)
223 KOG2287|consensus 49.5 2.3E+02 0.005 26.6 15.3 195 82-307 95-303 (349)
224 PF01793 Glyco_transf_15: Glyc 49.1 52 0.0011 30.5 6.2 116 80-198 53-205 (328)
225 PRK05293 glgC glucose-1-phosph 49.0 1.3E+02 0.0028 28.4 9.3 100 87-197 28-145 (380)
226 PRK00844 glgC glucose-1-phosph 47.5 92 0.002 29.9 8.1 100 87-197 30-145 (407)
227 COG1861 SpsF Spore coat polysa 46.6 1.4E+02 0.003 26.1 7.9 101 87-198 22-123 (241)
228 cd02537 GT8_Glycogenin Glycoge 42.6 2.2E+02 0.0047 25.0 9.1 88 96-191 14-112 (240)
229 KOG2977|consensus 41.5 3.7 8E-05 36.8 -2.3 105 85-191 11-121 (323)
230 PF09949 DUF2183: Uncharacteri 41.4 1.2E+02 0.0026 22.7 6.1 43 99-147 52-95 (100)
231 PF03028 Dynein_heavy: Dynein 40.5 1.1E+02 0.0023 31.9 7.8 85 102-194 106-195 (707)
232 KOG2733|consensus 39.1 76 0.0016 29.8 5.5 98 80-192 30-129 (423)
233 PF05045 RgpF: Rhamnan synthes 38.9 1.5E+02 0.0033 29.4 8.1 77 117-200 1-84 (498)
234 PLN02241 glucose-1-phosphate a 38.7 2.2E+02 0.0048 27.6 9.2 100 87-197 28-150 (436)
235 PHA01631 hypothetical protein 38.4 61 0.0013 26.7 4.3 64 114-182 17-86 (176)
236 PRK02862 glgC glucose-1-phosph 38.3 1.9E+02 0.0042 27.9 8.8 100 87-197 28-144 (429)
237 cd01461 vWA_interalpha_trypsin 37.2 2.1E+02 0.0045 23.0 7.8 23 114-137 100-122 (171)
238 COG0836 {ManC} Mannose-1-phosp 37.1 3.5E+02 0.0075 25.1 11.5 114 92-215 32-157 (333)
239 PLN00176 galactinol synthase 36.4 1.1E+02 0.0024 28.5 6.4 31 160-191 105-135 (333)
240 PRK14500 putative bifunctional 36.3 1.9E+02 0.0042 27.1 8.0 83 96-193 187-271 (346)
241 PF06189 5-nucleotidase: 5'-nu 34.5 2.8E+02 0.0061 24.8 8.2 96 81-189 34-141 (264)
242 PF04724 Glyco_transf_17: Glyc 32.8 2.6E+02 0.0055 26.5 8.2 97 87-190 84-201 (356)
243 COG2452 Predicted site-specifi 32.0 1.1E+02 0.0025 25.7 5.0 51 82-138 113-164 (193)
244 cd03174 DRE_TIM_metallolyase D 32.0 3.5E+02 0.0077 23.7 11.0 159 27-195 10-187 (265)
245 PRK13601 putative L7Ae-like ri 30.9 77 0.0017 22.8 3.5 56 99-160 14-69 (82)
246 PRK13602 putative ribosomal pr 30.9 73 0.0016 22.8 3.4 53 98-156 16-68 (82)
247 PRK06683 hypothetical protein; 30.9 72 0.0016 22.9 3.4 58 99-162 17-74 (82)
248 COG1212 KdsB CMP-2-keto-3-deox 29.8 3.9E+02 0.0084 23.5 14.9 196 83-305 3-219 (247)
249 COG1358 RPL8A Ribosomal protei 29.6 1.5E+02 0.0032 22.9 5.1 81 97-191 31-111 (116)
250 TIGR02092 glgD glucose-1-phosp 29.6 94 0.002 29.2 4.9 102 87-198 27-143 (369)
251 PF05045 RgpF: Rhamnan synthes 28.3 6E+02 0.013 25.2 13.8 93 80-181 263-362 (498)
252 PF11181 YflT: Heat induced st 26.7 1.1E+02 0.0023 22.9 3.9 33 87-122 2-34 (103)
253 PRK13600 putative ribosomal pr 25.6 89 0.0019 22.6 3.0 60 98-163 18-77 (84)
254 COG3967 DltE Short-chain dehyd 25.5 1.3E+02 0.0028 26.1 4.3 99 85-201 31-135 (245)
255 cd06270 PBP1_GalS_like Ligand 25.0 3.6E+02 0.0078 23.4 7.7 53 83-139 1-54 (268)
256 PF03213 Pox_P35: Poxvirus P35 24.7 1E+02 0.0022 28.3 3.8 38 164-201 115-153 (325)
257 PF03552 Cellulose_synt: Cellu 24.0 1.1E+02 0.0024 31.6 4.4 49 86-134 3-54 (720)
258 PRK11041 DNA-binding transcrip 23.9 5.2E+02 0.011 23.0 9.0 87 32-139 3-90 (309)
259 PF03414 Glyco_transf_6: Glyco 23.9 3.5E+02 0.0077 25.2 7.2 101 82-189 99-210 (337)
260 COG5020 KTR1 Mannosyltransfera 23.8 1.9E+02 0.0042 27.3 5.5 57 81-137 80-136 (399)
261 KOG4472|consensus 23.8 1.9E+02 0.0042 27.3 5.5 57 81-137 80-136 (399)
262 PTZ00222 60S ribosomal protein 23.7 1.7E+02 0.0036 26.1 4.8 71 117-195 152-222 (263)
263 PF04123 DUF373: Domain of unk 22.7 1.1E+02 0.0023 28.8 3.7 37 96-135 84-120 (344)
264 COG4639 Predicted kinase [Gene 22.6 1.7E+02 0.0037 24.1 4.3 64 96-161 52-115 (168)
265 PLN02718 Probable galacturonos 22.1 3.5E+02 0.0076 27.4 7.3 106 82-191 312-440 (603)
266 KOG3765|consensus 21.7 87 0.0019 29.9 3.0 43 275-317 310-352 (386)
267 cd06914 GT8_GNT1 GNT1 is a fun 21.4 5E+02 0.011 23.5 7.7 33 157-190 81-113 (278)
268 KOG0799|consensus 21.2 5.6E+02 0.012 25.0 8.5 104 83-193 104-219 (439)
269 PRK04017 hypothetical protein; 20.1 4.5E+02 0.0098 20.9 6.9 70 96-178 7-76 (132)
270 TIGR00334 5S_RNA_mat_M5 ribonu 20.0 2.2E+02 0.0048 23.8 4.7 54 115-178 3-58 (174)
No 1
>KOG3737|consensus
Probab=100.00 E-value=8.9e-83 Score=561.96 Aligned_cols=370 Identities=63% Similarity=1.110 Sum_probs=360.3
Q ss_pred CCcccCCCCCCCCCCCCC-CCCCCCCCCCccccCCHHHHHhhhhhhhccCcceeeecccCCCCCCCCCCccccccccCCC
Q psy11642 1 RPVFKADGKLGNLEPPLE-PYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPL 79 (372)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~~~~~r~~~~~r~~~~~~~~~~~ 79 (372)
+|+|.+|+ |||+||++| .++.||||.|+|+.|+++.+.+++++.+++|||+++||+|+++|+++|.|.+.|+...|+.
T Consensus 74 ~p~l~~G~-LGNfEPKepe~P~~gPGE~gkp~~l~pe~k~a~~AsekEfGfN~~~SDmISm~R~v~D~R~EECkhWdYpe 152 (603)
T KOG3737|consen 74 DPVLRPGI-LGNFEPKEPEPPVGGPGEKGKPLVLGPEFKQAIQASEKEFGFNMVASDMISMDRNVNDLRQEECKHWDYPE 152 (603)
T ss_pred CCcccccc-cCCCCCCCCCCCCCCCCcCCcccccChhHHHHHHHHHHhhCcceeehhhhhcccCccccCHhhccccCCcc
Confidence 68999997 999999997 6689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHH
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR 159 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~ 159 (372)
++|++||||+++||.|+.|.+|++|++.++++.++.|||+|||.|+.+.+.+.|++|...+...|++++++++.|+..||
T Consensus 153 ~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~REGLI~aR 232 (603)
T KOG3737|consen 153 NLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNERREGLIQAR 232 (603)
T ss_pred cCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCEEEEEecchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCC-ccccccccccccccCC
Q psy11642 160 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDH-HYRGIFEWGMLYKENE 238 (372)
Q Consensus 160 n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 238 (372)
..|+++|+|++|+|||++|++..+||.+|++.+.++.+++.+|+|+.+|+++++|.+.+++.. ..+|.|.|.+.++..+
T Consensus 233 SiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~ 312 (603)
T KOG3737|consen 233 SIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYKEVP 312 (603)
T ss_pred ccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheeccCC
Confidence 999999999999999999999999999999999999999999999999999999999998865 6799999999999999
Q ss_pred CcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCCC
Q psy11642 239 LPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSFM 318 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~~ 318 (372)
++..+...+...+.||++|+.+|+.|+|.|++|.++|.||+++.+||+|+++|++++|+||++|.++||++|.|+||..+
T Consensus 313 ~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVGHvYR~~m 392 (603)
T KOG3737|consen 313 LTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVGHVYRSLM 392 (603)
T ss_pred CCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCchhhhhHHHHHHHhCCCcchhhhhccCcccCCCCCCCCCCC
Q psy11642 319 PYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAYFYTREPLAMFLDMGDISEQ 372 (372)
Q Consensus 319 ~~~~~~~~~~~~~~~~~rn~~r~~~~w~d~~yk~~~~~~~~~~~~~~~gd~~~~ 372 (372)
+|.++......++..+..|+.|+.+.|+|+ ||++||.+.|++..+++||||+|
T Consensus 393 py~fgk~~~k~~~p~i~iNy~RVvetW~Dd-yk~YfytreP~a~~l~~GDISeq 445 (603)
T KOG3737|consen 393 PYQFGKPPIKVGSPPILINYVRVVETWWDD-YKDYFYTREPEAQALPYGDISEQ 445 (603)
T ss_pred cccCCCCccccCCCceEeehhhHHHHHHHh-hhhheeecChhhccCCcccHHHH
Confidence 999998877778889999999999999999 99999999999999999999986
No 2
>KOG3736|consensus
Probab=100.00 E-value=2.8e-70 Score=519.98 Aligned_cols=343 Identities=50% Similarity=0.883 Sum_probs=321.6
Q ss_pred CCCCCCCCCCccccCCHHHHHhhhhhhhccCcceeeecccCCCCCCCCCCcccccc-ccCCCCCCceEEEEEecCCChhH
Q psy11642 19 PYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKY-WDYPLDLPKASVILVFHNEGFSS 97 (372)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~~~~~r~~~~~r~~~~~~-~~~~~~~p~vSVIIp~yn~~~~~ 97 (372)
....++|..|+ +.++.++++..+..+++++||+++|++|+++|++||.|++.|.. ..+..++|++||||+++||+|+.
T Consensus 79 ~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~N~~~Sd~I~l~Rsl~D~r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~ 157 (578)
T KOG3736|consen 79 GPGGGGGGGGK-VKLPEAEEDLEDEGYEKNAFNALLSDRISLNRSLPDLRHPECKKLKYYSDKLPTTSVIIIFHNEAWST 157 (578)
T ss_pred ccCCCccccCc-ccCCcchHHHHHHHhhcccchhhhhhcccccCCCcchhchhhhhccccccccCCCceEEEEecCCCcc
Confidence 34466677777 77778888888888999999999999999999999999999987 55557799999999999999999
Q ss_pred HHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhccCcEEEEecCC
Q psy11642 98 LMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAH 177 (372)
Q Consensus 98 l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~gd~i~flD~D 177 (372)
|.++|.|++++|++.+..|||+|||.|+.+.+...++++++.+.. +++++++++.|+.+||+.|++.|+||+++|||++
T Consensus 158 llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~-v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsH 236 (578)
T KOG3736|consen 158 LLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK-VRILRTKKREGLIRARLLGASMATGEVLTFLDSH 236 (578)
T ss_pred hhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc-eeEEeecchhhhHHHHhhhhhhhhchheeeeecc
Confidence 999999999999999999999999999999977789999999874 9999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHHhhccCCCCcccCc
Q psy11642 178 CEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSP 257 (372)
Q Consensus 178 ~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (372)
+++..+||+++++.+..+...+++|+|+.++.++|.|... ....+|+|+|.+.|+|..+|..+...+...+.|+++|
T Consensus 237 cE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~---~~~~rGgFdW~l~f~w~~lP~~~~~~~~~~t~PirsP 313 (578)
T KOG3736|consen 237 CEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQ---SELMRGGFDWELTFKWERLPLPEEKRRELPTDPIRSP 313 (578)
T ss_pred eeEecCcchHHHHHhhhcCceeecceEEeecCcCceeccc---CccceeeeecceeEEeccCCccHhhcccCCCCCcCCc
Confidence 9999999999999999999999999999999999999875 4667899999999999999999888888889999999
Q ss_pred cccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCCCCCCCCcccccCCCchhhhh
Q psy11642 258 THAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVKGPLITYN 337 (372)
Q Consensus 258 ~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~~~~~~~~~~~~~~~~~~~rn 337 (372)
+|.||.|+|+|++|.++|+||++|.+||||++||++|+|+||++++.+|||+|+|++|...||++++. ..+..+|
T Consensus 314 tMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHifRk~~pY~~p~~-----~~~~~~N 388 (578)
T KOG3736|consen 314 TMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHIFRKRKPYTFPDG-----TDTATRN 388 (578)
T ss_pred ccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccceeeeeecCCCccCCCc-----chhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999763 2679999
Q ss_pred HHHHHHHhCCCcchhhhhccCcccCCCCCCCCCCC
Q psy11642 338 YKRVIETWFDEKHKAYFYTREPLAMFLDMGDISEQ 372 (372)
Q Consensus 338 ~~r~~~~w~d~~yk~~~~~~~~~~~~~~~gd~~~~ 372 (372)
.+|+|++|||+ ||.+||.++|.+..+++||||+|
T Consensus 389 ~~RlAeVWmDe-yK~~~y~~~P~~~~~d~GDvseR 422 (578)
T KOG3736|consen 389 LKRLAEVWMDE-YKEQFYKRMPGLRNIDEGDLTER 422 (578)
T ss_pred hhhhhhhhhHH-HHHHHHhhCccccccCCCCchhH
Confidence 99999999999 99999999999999999999986
No 3
>KOG3738|consensus
Probab=100.00 E-value=7.4e-67 Score=461.89 Aligned_cols=323 Identities=42% Similarity=0.792 Sum_probs=303.2
Q ss_pred HHHHhhhhhhhccCcceeeecccCCCCCCCCCCccccccccCCCCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCcc
Q psy11642 36 AYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLE 115 (372)
Q Consensus 36 ~~~~~~~~~~~~~~~n~~~s~~~~~~r~~~~~r~~~~~~~~~~~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~ 115 (372)
......++-++.+.||+..||.+...|.+|++|++.|....|..++|..||||.+|||+.+.|.+|+-|+++++++++..
T Consensus 78 ~~~~~Ged~y~~~~fnq~esd~l~~~r~i~dtRh~qC~~~~y~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~ 157 (559)
T KOG3738|consen 78 GKWHQGEDPYKANSFNQEESDKLNPTRKIPDTRHPQCRDVDYKVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIH 157 (559)
T ss_pred CCccCCCchhhcCccchhhhhhhCCCCccccccccccccceeecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhh
Confidence 33456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcC
Q psy11642 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD 195 (372)
Q Consensus 116 eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~ 195 (372)
|||+|||+|.|.+....|..+ .+|+++++.++.|+.+.|+.|+..|++.++.|||++|++..+||++|++.+.++
T Consensus 158 EiILVDD~S~Dped~~~L~ri-----~kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed 232 (559)
T KOG3738|consen 158 EIILVDDFSQDPEDGKLLKRI-----PKVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAED 232 (559)
T ss_pred eeEEecCCCCChHHHHHHhhh-----heeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhc
Confidence 999999999998755344333 389999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhc
Q psy11642 196 RKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG 275 (372)
Q Consensus 196 ~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iG 275 (372)
...+|+|+|+.|+.++|.|... ....+|+|+|++.|+|..+.......+..++.|+++|+++||.|+|+|++|.++|
T Consensus 233 ~trvVsPiiDvIn~dnf~Y~~a---sadLrGGFDWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LG 309 (559)
T KOG3738|consen 233 TTRVVSPIIDVINLDNFSYVGA---SADLRGGFDWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELG 309 (559)
T ss_pred ccceeecccccccccccccccc---hhhhcCCcceEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhc
Confidence 9999999999999999998754 4567999999999999999998888888999999999999999999999999999
Q ss_pred CCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCCCCCCCCcccccCCCchhhhhHHHHHHHhCCCcchhhhh
Q psy11642 276 GYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAYFY 355 (372)
Q Consensus 276 gfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~~~~~~~~~~~~~~~~~~~rn~~r~~~~w~d~~yk~~~~ 355 (372)
.||..|.+||||++|+++|+|+||+.++++||++|+|++|+.+||+++... +..+.+|.+|.+++|||| ||.+||
T Consensus 310 kyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGHVFRkrHpy~FP~gs----~~ty~~NTkr~AEvWmDE-YK~~yy 384 (559)
T KOG3738|consen 310 KYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGS----GNTYIKNTKRAAEVWMDE-YKNYYY 384 (559)
T ss_pred ccCccccccCCcceEEEEEEEeeCCeeEEEeccchhhhhhccCCCcCCCCC----CcchhhcchHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999753 468999999999999999 999999
Q ss_pred ccCcccCCCCCCCCCC
Q psy11642 356 TREPLAMFLDMGDISE 371 (372)
Q Consensus 356 ~~~~~~~~~~~gd~~~ 371 (372)
...|.++.++||++.+
T Consensus 385 aarPsAr~vpfg~i~~ 400 (559)
T KOG3738|consen 385 AARPSARRVPFGNIYD 400 (559)
T ss_pred hcCchhhcCCCccHHH
Confidence 9999999999999875
No 4
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=100.00 E-value=7.8e-48 Score=354.42 Aligned_cols=277 Identities=54% Similarity=0.984 Sum_probs=230.5
Q ss_pred EEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHH-HHHHcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED-YIQRFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 85 SVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~-~~~~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
|||||+||+..+.|.+||+||++|+++....|||||||||+|++.+ .+.+ ........+++++++.|.|+++|+|.|+
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~-~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~ 79 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELK-LLLEEYYKKYLPKVKVLRLKKREGLIRARIAGA 79 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHH-HHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHH
Confidence 7999999987689999999999999876456999999999999988 5544 3334445899999999999999999999
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHH
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 243 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
++|+||||+|||+|+++.++||+.|++.+.+++..+++|.+...+...+.+..... ...+.+.|...+.+.......
T Consensus 80 ~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (299)
T cd02510 80 RAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSG---DARGGFDWSLHFKWLPLPEEE 156 (299)
T ss_pred HHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCC---ceeEEecccceeccccCCHHH
Confidence 99999999999999999999999999999999998888988877776665543321 134556666555554444333
Q ss_pred HhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEecc-CCCCCCC
Q psy11642 244 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR-SFMPYNF 322 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~-~~~~~~~ 322 (372)
. .......+..+++++|+|+++||++|+++||||+.+..||+||+|||+|++++|+++.++|++.|.|.++ .+.++..
T Consensus 157 ~-~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~~~~~~~~~ 235 (299)
T cd02510 157 R-RRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRKRKPYTF 235 (299)
T ss_pred h-hhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEeccccCCCCCC
Confidence 2 2223345667889999999999999999999999999988899999999999999999999999999999 6777655
Q ss_pred CcccccCCCchhhhhHHHHHHHhCCCcchhhhhccCcccCCCCCCCCCCC
Q psy11642 323 GKLADRVKGPLITYNYKRVIETWFDEKHKAYFYTREPLAMFLDMGDISEQ 372 (372)
Q Consensus 323 ~~~~~~~~~~~~~rn~~r~~~~w~d~~yk~~~~~~~~~~~~~~~gd~~~~ 372 (372)
+... ....+|..|++++|+++ ++.++|+.+|....+..||+++|
T Consensus 236 ~~~~-----~~~~~n~~r~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~ 279 (299)
T cd02510 236 PGGS-----GTVLRNYKRVAEVWMDE-YKEYFYKARPELRNIDYGDLSER 279 (299)
T ss_pred CCcc-----cHHHHHHHHHHHHHHHH-HHHHHHhcCcccccCCCCCHHHH
Confidence 5421 15789999999999999 99999999999998999998764
No 5
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.98 E-value=1.1e-31 Score=231.77 Aligned_cols=173 Identities=18% Similarity=0.324 Sum_probs=145.5
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCC-cEEEEecCCCcc---hHH
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG---LIR 157 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~-~v~~i~~~~n~G---~~~ 157 (372)
|.||||||+||++ ..|.++|+|+++|+++++ |||||||+|+|+|.+ .++++.+.++. +++++....+.| .+.
T Consensus 1 p~vsviip~~n~~-~~l~~~L~sl~~q~~~~~--eiivVdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 76 (196)
T cd02520 1 PGVSILKPLCGVD-PNLYENLESFFQQDYPKY--EILFCVQDEDDPAIP-VVRKLIAKYPNVDARLLIGGEKVGINPKVN 76 (196)
T ss_pred CCeEEEEecCCCC-ccHHHHHHHHHhccCCCe--EEEEEeCCCcchHHH-HHHHHHHHCCCCcEEEEecCCcCCCCHhHH
Confidence 6799999999999 899999999999999886 999999999999987 89998887652 466777666655 456
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 158 a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
++|.|++.|+|||++|+|+|+.++|+||+.+++.+.+....++.+.
T Consensus 77 ~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~---------------------------------- 122 (196)
T cd02520 77 NLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL---------------------------------- 122 (196)
T ss_pred HHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee----------------------------------
Confidence 7889999999999999999999999999999999865444443321
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEe
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHV 313 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~ 313 (372)
...|++++++|++|+++|||++-... .+||+||++|+.++|+++.++|.+.++|.
T Consensus 123 --------------------~~~g~~~~~r~~~~~~~ggf~~~~~~-~~eD~~l~~rl~~~G~~i~~~~~~~~~~~ 177 (196)
T cd02520 123 --------------------CAFGKSMALRREVLDAIGGFEAFADY-LAEDYFLGKLIWRLGYRVVLSPYVVMQPL 177 (196)
T ss_pred --------------------cccCceeeeEHHHHHhccChHHHhHH-HHHHHHHHHHHHHcCCeEEEcchheeccC
Confidence 23578899999999999999763333 37999999999999999999999877764
No 6
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.98 E-value=4.5e-31 Score=234.15 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=152.0
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHc---CCcEEEEecCCCcc-hHH
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF---NGKVRLIRNTEREG-LIR 157 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~---~~~v~~i~~~~n~G-~~~ 157 (372)
|+||||||+||++ +.|.+||+||++|+++....||||||| |+|+|.+ .++++..++ ..+++++...++.| +++
T Consensus 1 p~vSViIp~yNe~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~-~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~ 77 (232)
T cd06437 1 PMVTVQLPVFNEK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVR-LAREIVEEYAAQGVNIKHVRRADRTGYKAG 77 (232)
T ss_pred CceEEEEecCCcH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHH-HHHHHHHHHhhcCCceEEEECCCCCCCchH
Confidence 5799999999999 999999999999999865569999998 9999888 777766543 34677777767777 688
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 158 a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
|+|.|++.|+|+||+|+|+|+.+.|+||+.+...+......++.+.+...+... ........+...+.
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~-- 145 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANY----------SLLTRVQAMSLDYH-- 145 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCC----------chhhHhhhhhHHhh--
Confidence 999999999999999999999999999999877765444444445332222110 00000000000000
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccC
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~ 316 (372)
...... .. ........+.|+++++||++|+++|||++... .||+||++|+++.|+++.++|++.++|..+.
T Consensus 146 -~~~~~~-~~---~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~---~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~ 216 (232)
T cd06437 146 -FTIEQV-AR---SSTGLFFNFNGTAGVWRKECIEDAGGWNHDTL---TEDLDLSYRAQLKGWKFVYLDDVVVPAELPA 216 (232)
T ss_pred -hhHhHh-hH---hhcCCeEEeccchhhhhHHHHHHhCCCCCCcc---hhhHHHHHHHHHCCCeEEEeccceeeeeCCc
Confidence 000000 00 00111223467778999999999999998653 7999999999999999999999999986443
No 7
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=8.2e-31 Score=227.22 Aligned_cols=198 Identities=17% Similarity=0.256 Sum_probs=150.4
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHh
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR 161 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~ 161 (372)
|++|||||+||+..+.|.+||+||++|++++. |||||||||+|++.+..++.+.... .+++++..++|.|.+.|+|.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~--eiivvd~gs~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~a~n~ 77 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNW--ELCIADDASTDPEVKRVLKKYAAQD-PRIKVVFREENGGISAATNS 77 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCe--EEEEEeCCCCChHHHHHHHHHHhcC-CCEEEEEcccCCCHHHHHHH
Confidence 67999999999976889999999999998876 9999999999988876777776664 47889999999999999999
Q ss_pred hhhhccCcEEEEecCCcccCCCChHHHHHhhhcCC-CEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCc
Q psy11642 162 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 240 (372)
Q Consensus 162 g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~-~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
|++.|++|||+|+|+|+.+.++||+.+++.+..++ ..++.+.....+...... ...+ ... ..
T Consensus 78 g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~--~~~-----~~ 140 (202)
T cd04184 78 ALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS----------EPFF--KPD-----WS 140 (202)
T ss_pred HHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe----------cccc--CCC-----CC
Confidence 99999999999999999999999999999995444 334433221111100000 0000 000 00
Q ss_pred HHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEE
Q psy11642 241 EREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIG 311 (372)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~ 311 (372)
... .......+++++++|++|.++||||+.+.. +||+||++|+.++|+++.++|.+.+.
T Consensus 141 ~~~----------~~~~~~~~~~~~~~r~~~~~iggf~~~~~~--~eD~~l~~rl~~~g~~~~~~~~~~~~ 199 (202)
T cd04184 141 PDL----------LLSQNYIGHLLVYRRSLVRQVGGFREGFEG--AQDYDLVLRVSEHTDRIAHIPRVLYH 199 (202)
T ss_pred HHH----------hhhcCCccceEeEEHHHHHHhCCCCcCccc--chhHHHHHHHHhccceEEEccHhhhh
Confidence 000 001123456678999999999999998763 89999999999999999999986544
No 8
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.97 E-value=8.7e-31 Score=233.68 Aligned_cols=230 Identities=13% Similarity=0.123 Sum_probs=160.9
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHh
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR 161 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~ 161 (372)
|.+|||||+||++ +.|.++|+|+++|++++..+|||||||+|+|+|.+ +++++......++.++.+.++.|++.|+|.
T Consensus 1 p~vsIiIp~~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~-i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~ 78 (241)
T cd06427 1 PVYTILVPLYKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIA-AARALRLPSIFRVVVVPPSQPRTKPKACNY 78 (241)
T ss_pred CeEEEEEecCCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHH-HHHHhccCCCeeEEEecCCCCCchHHHHHH
Confidence 6899999999999 99999999999999986556999999999999988 787775322235666666678999999999
Q ss_pred hhhhccCcEEEEecCCcccCCCChHHHHHhhhcC-CCEEE-eeeeecccCCcceeeeccCCCCcccccc--ccccccccC
Q psy11642 162 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD-RKIMT-VPVIDGIDYQTWEFRSVYEPDHHYRGIF--EWGMLYKEN 237 (372)
Q Consensus 162 g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~-~~~~v-~p~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 237 (372)
|+++|+||||+|+|+|+.+.|+||++++..+.++ +..++ .+.+...+.. .......+ .+...+.
T Consensus 79 g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-- 146 (241)
T cd06427 79 ALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR----------ENWLTRMFALEYAAWFD-- 146 (241)
T ss_pred HHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCC----------ccHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999764 44333 3433222111 00000000 0000000
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCC
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSF 317 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~ 317 (372)
.......... ....+.|+|+++||++|+++|||++.. + .||+||++|+.+.|+++.++|...+.|
T Consensus 147 ----~~~~~~~~~~---~~~~~~g~~~~~rr~~~~~vgg~~~~~--~-~eD~~l~~rl~~~G~r~~~~~~~~~~~----- 211 (241)
T cd06427 147 ----YLLPGLARLG---LPIPLGGTSNHFRTDVLRELGGWDPFN--V-TEDADLGLRLARAGYRTGVLNSTTLEE----- 211 (241)
T ss_pred ----HHHHHHHhcC---CeeecCCchHHhhHHHHHHcCCCCccc--c-hhhHHHHHHHHHCCceEEEeccccccc-----
Confidence 0000000000 011346788999999999999999842 2 799999999999999999998754332
Q ss_pred CCCCCCcccccCCCchhhhhHHHHHHHhCCCcchhhh
Q psy11642 318 MPYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAYF 354 (372)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~rn~~r~~~~w~d~~yk~~~ 354 (372)
.+ ...+...+...+|.-. +-+.+
T Consensus 212 ~~-------------~~~~~~~~q~~Rw~~g-~~~~~ 234 (241)
T cd06427 212 AN-------------NALGNWIRQRSRWIKG-YMQTW 234 (241)
T ss_pred Cc-------------HhHHHHHHHHHHHhcc-HHHHH
Confidence 11 2455666667777666 44443
No 9
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.97 E-value=4.9e-30 Score=236.33 Aligned_cols=221 Identities=25% Similarity=0.306 Sum_probs=166.5
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHH
Q psy11642 81 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS 160 (372)
Q Consensus 81 ~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n 160 (372)
+|.+|+||++||+. +.+.+||.|+.+|+++.. ++++|||+|+|++.+ .+++.. .+.++++.+.+|.|.+++.|
T Consensus 2 ~~~i~~iiv~yn~~-~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~-~~~~~~---~~~v~~i~~~~NlG~agg~n 74 (305)
T COG1216 2 MPKISIIIVTYNRG-EDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLE-ALKARF---FPNVRLIENGENLGFAGGFN 74 (305)
T ss_pred CcceEEEEEecCCH-HHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHH-HHHhhc---CCcEEEEEcCCCccchhhhh
Confidence 57899999999999 999999999999999876 777899999999887 444422 24899999999999999999
Q ss_pred hhhhhccCc---EEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCcccccccccccccc
Q psy11642 161 RGAKESRGE---VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKE 236 (372)
Q Consensus 161 ~g~~~a~gd---~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (372)
.|++.|.++ |+++||+|+.+.+++|++|++.+.+.+..+++ |.+...+......... .. ...+.+....
T Consensus 75 ~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~----~~~~~~~~~~-- 147 (305)
T COG1216 75 RGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG-GE----SDGLTGGWRA-- 147 (305)
T ss_pred HHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec-cc----ccccccccee--
Confidence 999999755 99999999999999999999999998876666 5555444332211111 00 0001110000
Q ss_pred CCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccC
Q psy11642 237 NELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316 (372)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~ 316 (372)
....+.... ..........+.|+|+++++++|+++|+||+++++| +||+|+|+|+.++|+++.++|.+.++|..+.
T Consensus 148 --~~~~~~~~~-~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y-~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~ 223 (305)
T COG1216 148 --SPLLEIAPD-LSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIY-YEDVDLCLRARKAGYKIYYVPDAIIYHKIGS 223 (305)
T ss_pred --ccccccccc-ccchhhhhhhcceeeeEEcHHHHHHhCCCCccccee-ehHHHHHHHHHHcCCeEEEeeccEEEEeccC
Confidence 000000000 000001111578999999999999999999999998 9999999999999999999999999998765
Q ss_pred CCC
Q psy11642 317 FMP 319 (372)
Q Consensus 317 ~~~ 319 (372)
+..
T Consensus 224 s~~ 226 (305)
T COG1216 224 SKG 226 (305)
T ss_pred CCC
Confidence 553
No 10
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.97 E-value=5e-30 Score=247.15 Aligned_cols=211 Identities=19% Similarity=0.267 Sum_probs=161.3
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHH
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 158 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a 158 (372)
...|.+||+||+|||+ +.+.+||+|+++|++++. |||||||||+|++.+ .++++.++++ ++++++.++|.|+++|
T Consensus 51 ~~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~--eiiVvdD~s~d~t~~-~l~~~~~~~~-~v~~i~~~~n~Gka~a 125 (420)
T PRK11204 51 KEYPGVSILVPCYNEG-ENVEETISHLLALRYPNY--EVIAINDGSSDNTGE-ILDRLAAQIP-RLRVIHLAENQGKANA 125 (420)
T ss_pred CCCCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCccHHH-HHHHHHHhCC-cEEEEEcCCCCCHHHH
Confidence 4568999999999999 999999999999999976 999999999999887 8888887754 7999998899999999
Q ss_pred HHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 159 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 159 ~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
+|.|++.+++|+++++|+|+.++|++|+++++.+.+++..+++ +.....+..++. .....+.+.. .+
T Consensus 126 ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~-------~~~~~~~~~~--~~--- 193 (420)
T PRK11204 126 LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLL-------GRIQVGEFSS--II--- 193 (420)
T ss_pred HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHH-------HHHHHHHHHH--hh---
Confidence 9999999999999999999999999999999999777665443 221111111000 0000000000 00
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEecc
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR 315 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~ 315 (372)
....... . ..-....++|+++++||++++++||||+.+. .||.|+++|+.++|+++.++|++.++|..+
T Consensus 194 ~~~~~~~--~----~~~~~~~~~G~~~~~rr~~l~~vgg~~~~~~---~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p 262 (420)
T PRK11204 194 GLIKRAQ--R----VYGRVFTVSGVITAFRKSALHEVGYWSTDMI---TEDIDISWKLQLRGWDIRYEPRALCWILMP 262 (420)
T ss_pred hHHHHHH--H----HhCCceEecceeeeeeHHHHHHhCCCCCCcc---cchHHHHHHHHHcCCeEEeccccEEEeECc
Confidence 0000000 0 0011334578899999999999999999875 699999999999999999999999998644
No 11
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.97 E-value=8e-30 Score=226.64 Aligned_cols=206 Identities=17% Similarity=0.197 Sum_probs=151.1
Q ss_pred EEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcc-hHHHHHhhh
Q psy11642 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-LIRTRSRGA 163 (372)
Q Consensus 85 SVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G-~~~a~n~g~ 163 (372)
|||||+||++.+.|.++|+||.+|+++++ |||||||+|+|++..+.+++++++++.+++++...+|.| +++|+|.|+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~--eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~ 78 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNF--EVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYAL 78 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCc--EEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHH
Confidence 79999999974689999999999999887 999999999999875578888877666788888877788 499999999
Q ss_pred hhcc--CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcH
Q psy11642 164 KESR--GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPE 241 (372)
Q Consensus 164 ~~a~--gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (372)
+.+. +|||+|+|+|+.++|+||..++..+.+....++.+.....+.. ...+.....|. + .
T Consensus 79 ~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~~--~------~ 140 (236)
T cd06435 79 ERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE----------ESLFKRMCYAE--Y------K 140 (236)
T ss_pred HhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC----------ccHHHHHHhHH--H------H
Confidence 9986 7999999999999999999999998744434443322111110 00010000010 0 0
Q ss_pred HHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEe
Q psy11642 242 REAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHV 313 (372)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~ 313 (372)
..................+|+++++||++|+++||||+.+. +||+||++|+.+.|+++.++|.+.++|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~~~~---~eD~dl~~r~~~~G~~~~~~~~~~~~~~ 209 (236)
T cd06435 141 GFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWDEWCI---TEDSELGLRMHEAGYIGVYVAQSYGHGL 209 (236)
T ss_pred HHHHHHhccccccCceEEecceEEEEHHHHHHhCCCCCccc---cchHHHHHHHHHCCcEEEEcchhhccCc
Confidence 00000000001112334578889999999999999999763 7999999999999999999999877653
No 12
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=1.3e-29 Score=219.57 Aligned_cols=198 Identities=16% Similarity=0.162 Sum_probs=148.8
Q ss_pred EEEEEecCCC-hhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 85 SVILVFHNEG-FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 85 SVIIp~yn~~-~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
|||||+||++ .++|.+||+||++|++++. |||||||||+++++.++++++.++.+ ++++..+.|.|.+.|+|.|+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~--eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~ 76 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPD--EVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGL 76 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCc--EEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHH
Confidence 7999999986 2499999999999998876 99999999965655558888887743 89999899999999999999
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhhcCCCE-EEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHH
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER 242 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~-~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (372)
+.|+|+||+|+|+|+.+.|++|+.++..+.+++.. ++++....++.......... ......
T Consensus 77 ~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ 138 (201)
T cd04195 77 KHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR------------------LPTSHD 138 (201)
T ss_pred HhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc------------------CCCCHH
Confidence 99999999999999999999999999999876554 44444433222211110000 000000
Q ss_pred HHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEE
Q psy11642 243 EAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H 312 (372)
........ ...+.++++++||++++++|+|++. . ++||++|++|+.++|+++.++|.+.++|
T Consensus 139 ~~~~~~~~-----~~~~~~~~~~~rr~~~~~~g~~~~~-~--~~eD~~~~~r~~~~g~~~~~~~~~~~~y 200 (201)
T cd04195 139 DILKFARR-----RSPFNHPTVMFRKSKVLAVGGYQDL-P--LVEDYALWARMLANGARFANLPEILVKA 200 (201)
T ss_pred HHHHHhcc-----CCCCCChHHhhhHHHHHHcCCcCCC-C--CchHHHHHHHHHHcCCceecccHHHhhc
Confidence 00000001 1123456789999999999999987 2 3899999999999999999999887764
No 13
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.97 E-value=2.6e-29 Score=242.28 Aligned_cols=221 Identities=18% Similarity=0.194 Sum_probs=160.4
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHH
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 158 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a 158 (372)
...|.+|||||+||++ +.|.+||+|+.+|++|+...|||||||||+|+|.+ +++++.+.++ .++++..+.+.|+++|
T Consensus 46 ~~~P~vsVIIP~yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~-il~~~~~~~~-~v~v~~~~~~~Gka~A 122 (439)
T TIGR03111 46 GKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQ-VFCRAQNEFP-GLSLRYMNSDQGKAKA 122 (439)
T ss_pred CCCCCEEEEEEeCCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHH-HHHHHHHhCC-CeEEEEeCCCCCHHHH
Confidence 4578999999999999 99999999999999987667999999999999987 8888877754 6777766788999999
Q ss_pred HHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 159 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 159 ~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
+|.|++.++||||+++|+|+.++|++|+++++.+.+++...++ +.+.. +.+... .. ..... .+.......
T Consensus 123 lN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~-~~~~~~---~~--~~~~~---~~~~~~~~~ 193 (439)
T TIGR03111 123 LNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILT-DKELIE---KT--KGRFL---KLIRRCEYF 193 (439)
T ss_pred HHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEec-Cchhhh---hh--cchhh---hHhHHhHHH
Confidence 9999999999999999999999999999999999877765443 44321 111000 00 00000 000000000
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHH-cCCeEEEEcccEEEEec
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWM-CGGSIEWVPCSRIGHVY 314 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~-~G~~i~~~p~~~v~H~~ 314 (372)
.........+......-....++|+++++||++++++|||++... +||.|+++|+.. .|+++.++|.+.++|..
T Consensus 194 ~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~~i---~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~ 268 (439)
T TIGR03111 194 EYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETV---GEDTDMTFQIRELLDGKVYLCENAIFYVDP 268 (439)
T ss_pred HHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCCCc---CccHHHHHHHHHhcCCeEEECCCCEEEEEC
Confidence 000000000000000011235678999999999999999998764 799999999974 69999999999999854
No 14
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.96 E-value=2.6e-29 Score=222.84 Aligned_cols=209 Identities=12% Similarity=0.119 Sum_probs=152.7
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcc-hHHHHH
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-LIRTRS 160 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G-~~~a~n 160 (372)
|.||||||+||++.+.|.+||+|++.|+++...+|||||||||+|++.+ +++++..+. .++++..+.|.| .++++|
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~n 77 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRA-LAAELGVEY--GYRYLTRPDNRHAKAGNLN 77 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHH-HHHHhhccc--CceEEEeCCCCCCcHHHHH
Confidence 6799999999986468999999999999988334999999999998877 888876553 466676666655 678899
Q ss_pred hhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCE-EEeeeeecccCCcceeeeccCCCCccccccccccccccCCC
Q psy11642 161 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENEL 239 (372)
Q Consensus 161 ~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~-~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (372)
.|++.|++|||+|+|+|+.+.|+||+.+++.+.+++.. ++.+.....+..... .....+.+.... .
T Consensus 78 ~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~----~ 144 (234)
T cd06421 78 NALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFD---------WLADGAPNEQEL----F 144 (234)
T ss_pred HHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcch---------hHHHHHHHHHHH----H
Confidence 99999999999999999999999999999999885544 444332221111100 000000000000 0
Q ss_pred cHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEe
Q psy11642 240 PEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHV 313 (372)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~ 313 (372)
....... ..........|+++++||++|+++|||++.+. +||++|++|+.++|+++.++|.+.++|.
T Consensus 145 ~~~~~~~----~~~~~~~~~~g~~~~~r~~~~~~ig~~~~~~~---~eD~~l~~r~~~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 145 YGVIQPG----RDRWGAAFCCGSGAVVRREALDEIGGFPTDSV---TEDLATSLRLHAKGWRSVYVPEPLAAGL 211 (234)
T ss_pred HHHHHHH----HhhcCCceecCceeeEeHHHHHHhCCCCccce---eccHHHHHHHHHcCceEEEecCcccccc
Confidence 0000000 00122456678999999999999999997654 7999999999999999999999998865
No 15
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.96 E-value=3e-29 Score=220.46 Aligned_cols=206 Identities=17% Similarity=0.232 Sum_probs=149.1
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC-CcEEEEe----cCCCcchHHHHH
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIR----NTEREGLIRTRS 160 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~-~~v~~i~----~~~n~G~~~a~n 160 (372)
||||+||++ +.|.+||+||++|+++. ..|||||||||+|+|.+ +++++.++++ .+++++. .+.+.|.+.|+|
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~-~~eiiVvDd~S~d~t~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N 77 (219)
T cd06913 1 IILPVHNGE-QWLDECLESVLQQDFEG-TLELSVFNDASTDKSAE-IIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKN 77 (219)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCCCC-CEEEEEEeCCCCccHHH-HHHHHHHhCcccCeEEEEecccCCCCccHHHHHH
Confidence 699999999 99999999999999873 24999999999999987 8898877643 2566664 345689999999
Q ss_pred hhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCc
Q psy11642 161 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 240 (372)
Q Consensus 161 ~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
.|++.|+||||+|||+|+.+.|+|++.++..+.+++..++++.+........ ..+ ..|.. .+.
T Consensus 78 ~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~---~~~~~-----~~~ 140 (219)
T cd06913 78 QAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDST---------ERY---TRWIN-----TLT 140 (219)
T ss_pred HHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccc---------hhh---HHHHH-----hcC
Confidence 9999999999999999999999999999998887776665544332211100 000 00000 011
Q ss_pred HHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEecc
Q psy11642 241 EREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR 315 (372)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~ 315 (372)
........... ..+.+....+++||++|+++|||++.+..+ +||++|++|+.++|+++.++|.+.+.+..+
T Consensus 141 ~~~~~~~~~~~---~~~~~~~~~~~~rr~~~~~~g~f~~~~~~~-~eD~~l~~r~~~~g~~i~~~~~~~~~yr~~ 211 (219)
T cd06913 141 REQLLTQVYTS---HGPTVIMPTWFCSREWFSHVGPFDEGGKGV-PEDLLFFYEHLRKGGGVYRVDRCLLLYRYH 211 (219)
T ss_pred HHHHHHHHHhh---cCCccccccceeehhHHhhcCCccchhccc-hhHHHHHHHHHHcCCceEEEcceeeeeeec
Confidence 11000000000 011122234689999999999999987654 799999999999999999999988875543
No 16
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.96 E-value=2.3e-29 Score=222.49 Aligned_cols=208 Identities=24% Similarity=0.433 Sum_probs=133.5
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCC-cEEEEecCCCcc---hHH
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG---LIR 157 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~-~v~~i~~~~n~G---~~~ 157 (372)
|.||||||+||+. +.|.++|+|+++|+++.+ ||+||||+|++++.+ .++++.+.++. +++++..+.|.| ++.
T Consensus 1 P~v~Vvip~~~~~-~~l~~~l~sl~~~~~~~~--~v~vvd~~~~~~~~~-~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~ 76 (228)
T PF13641_consen 1 PRVSVVIPAYNED-DVLRRCLESLLAQDYPRL--EVVVVDDGSDDETAE-ILRALAARYPRVRVRVIRRPRNPGPGGKAR 76 (228)
T ss_dssp --EEEE--BSS-H-HHHHHHHHHHTTSHHHTE--EEEEEEE-SSS-GCT-THHHHHHTTGG-GEEEEE----HHHHHHHH
T ss_pred CEEEEEEEecCCH-HHHHHHHHHHHcCCCCCe--EEEEEECCCChHHHH-HHHHHHHHcCCCceEEeecCCCCCcchHHH
Confidence 6799999999999 999999999999998765 999999999998877 88888887764 578888776665 788
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 158 a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
++|.|++.+++|+|+|+|+|+.+.|+||+.+++.+......++.+.+...+...+ .... ... .+. .+...+
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-~~~-~~~---~~~~~~--- 147 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNW-LTRL-QDL-FFA---RWHLRF--- 147 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCE-EEE--TT---S----EETTTS---
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCH-HHHH-HHH-HHh---hhhhhh---
Confidence 9999999999999999999999999999999999955555555554433222211 1100 000 000 000000
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEecc
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR 315 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~ 315 (372)
...........+.|++++++|++|+++||||+ +.. +||++|++|+.+.|+++.+.|.+.++|..+
T Consensus 148 ----------~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~-~~~--~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~ 212 (228)
T PF13641_consen 148 ----------RSGRRALGVAFLSGSGMLFRRSALEEVGGFDP-FIL--GEDFDLCLRLRAAGWRIVYAPDALVYHEEP 212 (228)
T ss_dssp -----------TT-B----S-B--TEEEEEHHHHHHH-S--S-SSS--SHHHHHHHHHHHTT--EEEEEEEEEEE--S
T ss_pred ----------hhhhcccceeeccCcEEEEEHHHHHHhCCCCC-CCc--ccHHHHHHHHHHCCCcEEEECCcEEEEeCC
Confidence 00011123455679999999999999999999 333 699999999999999999999999999744
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.96 E-value=6.5e-29 Score=240.21 Aligned_cols=209 Identities=22% Similarity=0.290 Sum_probs=159.7
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHH
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR 159 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~ 159 (372)
..|.||||||+|||+ ..+.+||+|+++|+|++. |||||||||+|+|.+ .++++.++++ ++++++.++|.|+++|+
T Consensus 73 ~~p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~--eIivVdDgs~D~t~~-~~~~~~~~~~-~v~vv~~~~n~Gka~Al 147 (444)
T PRK14583 73 GHPLVSILVPCFNEG-LNARETIHAALAQTYTNI--EVIAINDGSSDDTAQ-VLDALLAEDP-RLRVIHLAHNQGKAIAL 147 (444)
T ss_pred CCCcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCe--EEEEEECCCCccHHH-HHHHHHHhCC-CEEEEEeCCCCCHHHHH
Confidence 458999999999999 899999999999999976 999999999999887 8888887754 79999988999999999
Q ss_pred HhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccccccccccCC
Q psy11642 160 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENE 238 (372)
Q Consensus 160 n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (372)
|.|++.+++|+++++|+|+.+++++++.+++.+.+++..+++ +.....+.+++- .....+.+. ..+.
T Consensus 148 N~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~-------~~~~~~e~~--~~~~--- 215 (444)
T PRK14583 148 RMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLI-------GRVQVGEFS--SIIG--- 215 (444)
T ss_pred HHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcch-------hhHHHHHHH--HHHH---
Confidence 999999999999999999999999999999999877665444 211111111100 000000000 0000
Q ss_pred CcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEec
Q psy11642 239 LPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVY 314 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~ 314 (372)
...... ... -....++|+++++||++++++|||++++. .||.|+++|+.++|+++.+.|++.+++..
T Consensus 216 ~~~~~~--~~~----g~~~~~sG~~~~~rr~al~~vGg~~~~~i---~ED~dl~~rl~~~G~~i~~~p~a~~~~~~ 282 (444)
T PRK14583 216 LIKRTQ--RVY----GQVFTVSGVVAAFRRRALADVGYWSPDMI---TEDIDISWKLQLKHWSVFFEPRGLCWILM 282 (444)
T ss_pred HHHHHH--HHh----CCceEecCceeEEEHHHHHHcCCCCCCcc---cccHHHHHHHHHcCCeEEEeeccEEeeeC
Confidence 000000 000 11335578899999999999999999875 69999999999999999999999988753
No 18
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.96 E-value=1.2e-28 Score=210.11 Aligned_cols=180 Identities=16% Similarity=0.308 Sum_probs=142.1
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEE-EEecCCCcchHHHHHhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR-LIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~-~i~~~~n~G~~~a~n~g~~ 164 (372)
||||+||+. +.|.+||+|+.+|++++. |||||||+|+|++.+ .++++....+.++. +++.+.+.|.++++|.|++
T Consensus 1 ivip~~n~~-~~l~~~l~sl~~q~~~~~--eiivvdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~ 76 (182)
T cd06420 1 LIITTYNRP-EALELVLKSVLNQSILPF--EVIIADDGSTEETKE-LIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIA 76 (182)
T ss_pred CEEeecCCh-HHHHHHHHHHHhccCCCC--EEEEEeCCCchhHHH-HHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHH
Confidence 699999999 999999999999998777 999999999998877 88888765433344 3444455688999999999
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHH
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREA 244 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (372)
.|+|+||+|||+|+.+.++||+.+++.+ .....++++.+.. +...
T Consensus 77 ~a~g~~i~~lD~D~~~~~~~l~~~~~~~-~~~~~v~g~~~~~-~~~~--------------------------------- 121 (182)
T cd06420 77 AAKGDYLIFIDGDCIPHPDFIADHIELA-EPGVFLSGSRVLL-NEKL--------------------------------- 121 (182)
T ss_pred HhcCCEEEEEcCCcccCHHHHHHHHHHh-CCCcEEecceeec-cccc---------------------------------
Confidence 9999999999999999999999999988 3333333232211 0000
Q ss_pred hhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeE-EEEcccEEEEec
Q psy11642 245 KKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSI-EWVPCSRIGHVY 314 (372)
Q Consensus 245 ~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i-~~~p~~~v~H~~ 314 (372)
......|++++++|+.+.++|||++.+..||+||+||++|++++|++. .+.+.+.++|.+
T Consensus 122 ----------~~~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h~~ 182 (182)
T cd06420 122 ----------TERGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFHLW 182 (182)
T ss_pred ----------ceeEeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeeecC
Confidence 002345778889999999999999999999899999999999999555 455588888864
No 19
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.96 E-value=1.4e-28 Score=213.44 Aligned_cols=174 Identities=19% Similarity=0.206 Sum_probs=147.8
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 165 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~ 165 (372)
||||+||++ +.|.+||+||++|+++.. |||||||||+|+|.+ .++++.... .++++..++|.|.+.++|.|+..
T Consensus 1 viI~~~n~~-~~l~~~l~sl~~q~~~~~--eiiivD~~s~d~t~~-~~~~~~~~~--~i~~~~~~~n~g~~~~~n~~~~~ 74 (202)
T cd04185 1 AVVVTYNRL-DLLKECLDALLAQTRPPD--HIIVIDNASTDGTAE-WLTSLGDLD--NIVYLRLPENLGGAGGFYEGVRR 74 (202)
T ss_pred CEEEeeCCH-HHHHHHHHHHHhccCCCc--eEEEEECCCCcchHH-HHHHhcCCC--ceEEEECccccchhhHHHHHHHH
Confidence 699999999 999999999999998876 999999999999887 777776543 38899999999999999999987
Q ss_pred c---cCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHH
Q psy11642 166 S---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER 242 (372)
Q Consensus 166 a---~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (372)
| ++|+++|+|+|+.+.++|++.+++.+.+....++.|.+...++
T Consensus 75 a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--------------------------------- 121 (202)
T cd04185 75 AYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG--------------------------------- 121 (202)
T ss_pred HhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC---------------------------------
Confidence 6 6999999999999999999999999984444444443321100
Q ss_pred HHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCC
Q psy11642 243 EAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSF 317 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~ 317 (372)
.+++++++|++|+++|+|++.+..| +||.||++|+.++|+++ ++|.+.++|..+..
T Consensus 122 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~-~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~ 177 (202)
T cd04185 122 -----------------SFVGVLISRRVVEKIGLPDKEFFIW-GDDTEYTLRASKAGPGI-YVPDAVVVHKTAIN 177 (202)
T ss_pred -----------------ceEEEEEeHHHHHHhCCCChhhhcc-chHHHHHHHHHHcCCcE-EecceEEEEccccc
Confidence 2345789999999999999998877 79999999999999999 99999999976543
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.96 E-value=3.1e-28 Score=217.74 Aligned_cols=210 Identities=21% Similarity=0.245 Sum_probs=155.9
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhh
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 162 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g 162 (372)
++|||||+||++ +.|.++|+|+.+|+++...+|||||||+|+|++.+ .++.+..+. ..++++.+ ++.|.+.|+|.|
T Consensus 1 ~~sIiip~~n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~-~~~~~~~~~-~~v~~i~~-~~~~~~~a~N~g 76 (249)
T cd02525 1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTRE-IVQEYAAKD-PRIRLIDN-PKRIQSAGLNIG 76 (249)
T ss_pred CEEEEEEcCCch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHH-HHHHHHhcC-CeEEEEeC-CCCCchHHHHHH
Confidence 489999999999 99999999999999853345999999999999877 888887764 36888876 467899999999
Q ss_pred hhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHH
Q psy11642 163 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER 242 (372)
Q Consensus 163 ~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (372)
++.|++|||+|+|+|+.+.|+||+++++.+.+.+..++++................ .....+ .......
T Consensus 77 ~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~----- 145 (249)
T cd02525 77 IRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAV----AQSSPL--GSGGSAY----- 145 (249)
T ss_pred HHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHH----Hhhchh--ccCCccc-----
Confidence 99999999999999999999999999998887766665544332221111000000 000000 0000000
Q ss_pred HHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEecc
Q psy11642 243 EAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR 315 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~ 315 (372)
. ....-......|++++++|++|.++|+|++.+.. +||+||++|++++|+++.++|.+.+.|..+
T Consensus 146 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~ 210 (249)
T cd02525 146 ----R--GGAVKIGYVDTVHHGAYRREVFEKVGGFDESLVR--NEDAELNYRLRKAGYKIWLSPDIRVYYYPR 210 (249)
T ss_pred ----c--ccccccccccccccceEEHHHHHHhCCCCcccCc--cchhHHHHHHHHcCcEEEEcCCeEEEEcCC
Confidence 0 0000002244678899999999999999998764 799999999999999999999999998654
No 21
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.96 E-value=1.2e-28 Score=233.92 Aligned_cols=213 Identities=18% Similarity=0.227 Sum_probs=153.4
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC--CcEEEEecCC----C
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN--GKVRLIRNTE----R 152 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~--~~v~~i~~~~----n 152 (372)
...|+||||||+|||+ +.|.+||+|+++|+++. ..|||||||+|+|+|.+ +++++.++++ .++++++.+. .
T Consensus 37 ~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~-i~~~~~~~~~~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 37 EAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTAD-IARAAARAYGRGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCCCEEEEEecCCcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHH-HHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence 4678999999999999 99999999999999984 24999999999999987 8998887654 2688887432 3
Q ss_pred cchHHHHHhhhhhcc-----CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccc
Q psy11642 153 EGLIRTRSRGAKESR-----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGI 227 (372)
Q Consensus 153 ~G~~~a~n~g~~~a~-----gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (372)
.|++.|+|.|+++|+ +|+|+|+|+|+.++|+||+.+++.+.+++..++++.........+.. .....
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~--------~~~~~ 185 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEK--------LLIPA 185 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHH--------HHHHH
Confidence 588899999999999 99999999999999999999999998776655543221111000000 00000
Q ss_pred cccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcc
Q psy11642 228 FEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 307 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~ 307 (372)
+.+. +... .+.. . ............|+|+++||++|+++||||+..... .||.+|+.|+.++|+++.+...
T Consensus 186 ~~~~--~~~~-~~~~----~-~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~-~ED~~L~~r~~~~G~~v~~~~~ 256 (384)
T TIGR03469 186 FVFF--FQKL-YPFR----W-VNDPRRRTAAAAGGCILIRREALERIGGIAAIRGAL-IDDCTLAAAVKRSGGRIWLGLA 256 (384)
T ss_pred HHHH--HHHh-cchh----h-hcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCc-ccHHHHHHHHHHcCCcEEEEec
Confidence 0000 0000 0000 0 000001234567999999999999999999854443 7999999999999999998765
Q ss_pred cEEE
Q psy11642 308 SRIG 311 (372)
Q Consensus 308 ~~v~ 311 (372)
....
T Consensus 257 ~~~~ 260 (384)
T TIGR03469 257 ARTR 260 (384)
T ss_pred CceE
Confidence 5443
No 22
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.96 E-value=4.3e-28 Score=229.46 Aligned_cols=211 Identities=16% Similarity=0.227 Sum_probs=151.4
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCC-cEEEEecCCCcc---
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG--- 154 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~-~v~~i~~~~n~G--- 154 (372)
...|.||||||+||++ +.|.+||+|+++|+|+++ ||||+||+|+|.+.+ +++++.++++. +++++..+++.|
T Consensus 38 ~~~p~VSViiP~~nee-~~l~~~L~Sl~~q~Yp~~--EIivvdd~s~D~t~~-iv~~~~~~~p~~~i~~v~~~~~~G~~~ 113 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDE-PELYENLASFCRQDYPGF--QMLFGVQDPDDPALA-VVRRLRADFPDADIDLVIDARRHGPNR 113 (373)
T ss_pred CCCCCeEEEEECCCCC-hhHHHHHHHHHhcCCCCe--EEEEEeCCCCCcHHH-HHHHHHHhCCCCceEEEECCCCCCCCh
Confidence 3468899999999999 999999999999999986 999999999998887 99999888763 578887766655
Q ss_pred hHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCcccccccccccc
Q psy11642 155 LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 234 (372)
Q Consensus 155 ~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (372)
+..+.+.++++|++|+|+|+|+|+.++|+||+.++..+.+....++++.....+...+ ..........
T Consensus 114 K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~-----------~~~l~~~~~~- 181 (373)
T TIGR03472 114 KVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGF-----------WSRLGAMGIN- 181 (373)
T ss_pred HHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCH-----------HHHHHHHHhh-
Confidence 5566677889999999999999999999999999999975454444432211111100 0000000000
Q ss_pred ccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEE
Q psy11642 235 KENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H 312 (372)
....+......... ......|+++++||++|+++|||++..... .||++|+.|+.++|+++.+.|.....+
T Consensus 182 -~~~~~~~~~~~~~~-----~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~-~ED~~l~~~i~~~G~~v~~~~~~v~~~ 252 (373)
T TIGR03472 182 -HNFLPSVMVARALG-----RARFCFGATMALRRATLEAIGGLAALAHHL-ADDYWLGELVRALGLRVVLAPVVVDTD 252 (373)
T ss_pred -hhhhHHHHHHHhcc-----CCccccChhhheeHHHHHHcCChHHhcccc-hHHHHHHHHHHHcCCeEEecchhhhcC
Confidence 00011100000000 012356889999999999999999744433 699999999999999999988764443
No 23
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.96 E-value=5e-28 Score=209.01 Aligned_cols=196 Identities=16% Similarity=0.230 Sum_probs=148.3
Q ss_pred EEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhh
Q psy11642 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 85 SVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~ 164 (372)
|||||+||++ +.|.+||.|+++|+++++ |||||||+|+|++.+ .++++..+ +.++...+|.|++.|+|.|++
T Consensus 1 sivi~~~n~~-~~l~~~l~sl~~q~~~~~--evivvDd~s~d~~~~-~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~ 72 (202)
T cd06433 1 SIITPTYNQA-ETLEETIDSVLSQTYPNI--EYIVIDGGSTDGTVD-IIKKYEDK----ITYWISEPDKGIYDAMNKGIA 72 (202)
T ss_pred CEEEeccchH-HHHHHHHHHHHhCCCCCc--eEEEEeCCCCccHHH-HHHHhHhh----cEEEEecCCcCHHHHHHHHHH
Confidence 7999999999 999999999999998876 999999999999877 77777543 344556789999999999999
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhcCC-CEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHH
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 243 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~-~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
.|+++||+|+|+|+.+.++++..++..+...+ ..++++.....+......... . ......
T Consensus 73 ~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~--------~-----------~~~~~~ 133 (202)
T cd06433 73 LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRR--------R-----------PPPFLD 133 (202)
T ss_pred HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCC--------C-----------Ccchhh
Confidence 99999999999999999999999996665554 344444333222211100000 0 000000
Q ss_pred HhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccC
Q psy11642 244 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~ 316 (372)
........+.+++++++|++|+++|+|++.+.. +||+||++|+++.|+++.++|...+.|..+.
T Consensus 134 -------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~D~~~~~r~~~~g~~~~~~~~~~~~~~~~~ 197 (202)
T cd06433 134 -------KFLLYGMPICHQATFFRRSLFEKYGGFDESYRI--AADYDLLLRLLLAGKIFKYLPEVLAAFRLGG 197 (202)
T ss_pred -------hHHhhcCcccCcceEEEHHHHHHhCCCchhhCc--hhhHHHHHHHHHcCCceEecchhhhhheecC
Confidence 000113345667789999999999999998875 6899999999999999999999888866443
No 24
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.96 E-value=3.4e-27 Score=213.06 Aligned_cols=205 Identities=19% Similarity=0.217 Sum_probs=143.1
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHc-CCcEEEEecCCCcchHHH
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF-NGKVRLIRNTEREGLIRT 158 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~-~~~v~~i~~~~n~G~~~a 158 (372)
..|.||||||+||++ +.|.+||+|+++|+++++ |||||||||++ .+ .++++++.+ +.++++++++.|.|.+.|
T Consensus 3 ~~p~VSVIip~yN~~-~~l~~~l~Svl~Qt~~~~--EiIVVDDgS~~--~~-~~~~~~~~~~~~ri~~i~~~~n~G~~~a 76 (279)
T PRK10018 3 DNPLISIYMPTWNRQ-QLAIRAIKSVLRQDYSNW--EMIIVDDCSTS--WE-QLQQYVTALNDPRITYIHNDINSGACAV 76 (279)
T ss_pred CCCEEEEEEEeCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCC--HH-HHHHHHHHcCCCCEEEEECCCCCCHHHH
Confidence 468999999999999 999999999999999987 99999999995 23 666776643 458999999999999999
Q ss_pred HHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCC-EEEeeeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 159 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 159 ~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~-~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
+|.|++.|+|+||+|||+|+.+.|++|+.+++.+.+... ..+........+.. ....... . .+...
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~------~~p~~ 143 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQGEV------YSQPASL-P------LYPKS 143 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeecCcc------ccccccc-C------CCCCC
Confidence 999999999999999999999999999999998876433 22221100000000 0000000 0 00000
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEccc-EEEEeccC
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCS-RIGHVYRS 316 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~-~v~H~~~~ 316 (372)
........ .....|+..++.+..+. .++||+.+.. .||+||++|+...|+....+|.+ .++|+...
T Consensus 144 ~~~~~~~~----------~~n~ig~~~~~~~~~~~-~~~fd~~~~~--~eDydlwlrl~~~~~~~~~~~~~l~~y~~~~~ 210 (279)
T PRK10018 144 PYSRRLFY----------KRNIIGNQVFTWAWRFK-ECLFDTELKA--AQDYDIFLRMVVEYGEPWKVEEATQILHINHG 210 (279)
T ss_pred CCCHHHHH----------HhcCcCceeeehhhhhh-hcccCCCCCc--cccHHHHHHHHHhcCceEeeccceEEEEcCCC
Confidence 00000000 01122333445555554 4679999876 79999999999999999999987 45555333
No 25
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.96 E-value=1.1e-27 Score=218.55 Aligned_cols=227 Identities=18% Similarity=0.166 Sum_probs=156.5
Q ss_pred EecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc--
Q psy11642 89 VFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-- 166 (372)
Q Consensus 89 p~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a-- 166 (372)
+|||++.+.|.+||+||++|+. |||||||||+++ . .++.+.+.. ++++++++++|.|.++|+|.|++.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~~-----~iiVVDN~S~~~--~-~~~~~~~~~-~~i~~i~~~~N~G~a~a~N~Gi~~a~~ 71 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQVD-----RIIAVDNSPHSD--Q-PLKNARLRG-QKIALIHLGDNQGIAGAQNQGLDASFR 71 (281)
T ss_pred CccCccHHHHHHHHHHHHhcCC-----EEEEEECcCCCc--H-hHHHHhccC-CCeEEEECCCCcchHHHHHHHHHHHHH
Confidence 4899855899999999999862 999999999765 1 233333333 4799999999999999999999998
Q ss_pred -cCcEEEEecCCcccCCCChHHHHHhhhcCC-C-EEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHH
Q psy11642 167 -RGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-K-IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 243 (372)
Q Consensus 167 -~gd~i~flD~D~~~~~~~L~~ll~~~~~~~-~-~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
.+|||+|||+|+.+.+++|+.+++.+.+.+ . .++.|.+...+.... +. .....+ + ......
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~-~----~~~~~~----- 135 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRR-LP-----AIHLDG-L----LLRQIS----- 135 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCccc-CC-----ceeecc-c----ceeeec-----
Confidence 689999999999999999999999988764 3 444465432211100 00 000000 0 000000
Q ss_pred HhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCCCCCCCC
Q psy11642 244 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSFMPYNFG 323 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~~~~~~~ 323 (372)
......+..+..+.+++++++|++|+++|+||+.++++ +||+|+|+|+.+.|+++.++|.+.++|..+.......+
T Consensus 136 ---~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fde~~fi~-~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~~~~~~~~ 211 (281)
T TIGR01556 136 ---LDGLTTPQKTSFLISSGCLITREVYQRLGMMDEELFID-HVDTEWSLRAQNYGIPLYIDPDIVLEHRIGDSKVRILG 211 (281)
T ss_pred ---ccccCCceeccEEEcCcceeeHHHHHHhCCccHhhccc-chHHHHHHHHHHCCCEEEEeCCEEEEEecCCccceecc
Confidence 00011122333444555689999999999999999987 79999999999999999999999999976543211001
Q ss_pred c------ccccCCCchhhhhHHHHHHH
Q psy11642 324 K------LADRVKGPLITYNYKRVIET 344 (372)
Q Consensus 324 ~------~~~~~~~~~~~rn~~r~~~~ 344 (372)
. ..+..+..+..||...+..+
T Consensus 212 ~~~~~~~~~s~~r~yy~~RN~~~~~~~ 238 (281)
T TIGR01556 212 GLSLSIPNHSPLRRYYLFRNGILVLRR 238 (281)
T ss_pred cceeeecCCCchHHHHHHHHHHHHHhc
Confidence 0 11112446788998877664
No 26
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.95 E-value=3.1e-27 Score=219.11 Aligned_cols=213 Identities=19% Similarity=0.232 Sum_probs=151.0
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHH
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR 159 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~ 159 (372)
..|.||||||+||++ ++|.+||+||++|+++++ |||||||||+|+|.+ +++++.++.+ ++++++. +|.|.+.|+
T Consensus 4 ~~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~--EIIiVdDgStD~t~~-i~~~~~~~~~-~i~vi~~-~n~G~~~ar 77 (328)
T PRK10073 4 STPKLSIIIPLYNAG-KDFRAFMESLIAQTWTAL--EIIIVNDGSTDNSVE-IAKHYAENYP-HVRLLHQ-ANAGVSVAR 77 (328)
T ss_pred CCCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCe--EEEEEeCCCCccHHH-HHHHHHhhCC-CEEEEEC-CCCChHHHH
Confidence 358899999999999 999999999999999887 999999999999988 9999988754 8999875 699999999
Q ss_pred HhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeee-cccCCcceeeeccCCCCccccccccccccccCC
Q psy11642 160 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID-GIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENE 238 (372)
Q Consensus 160 n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (372)
|.|++.|+|+||+|+|+|+.+.|++++.+++.+.+++..+++.... ..+... ........ .. ......
T Consensus 78 N~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~~~~~-~~~~~~~~-----~~-----~~~~~~ 146 (328)
T PRK10073 78 NTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNADWCFRDTG-ETWQSIPS-----DR-----LRSTGV 146 (328)
T ss_pred HHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEEeCCC-cccccccc-----cc-----ccccce
Confidence 9999999999999999999999999999999987665444432111 111100 00000000 00 000000
Q ss_pred CcHHHHhhccCCCCcccCccccccchhccHHHHHHhcC-CCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEecc
Q psy11642 239 LPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGG-YDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR 315 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGg-fd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~ 315 (372)
+..............+.. ...+.++||+++++.|. |++++. +||++++.++...+.++.+++...+.+..+
T Consensus 147 ~~~~~~l~~~l~~~~~~~---~~~~~l~Rr~~l~~~~~~f~~~~~---~eD~~~~~~~~~~~~~v~~~~~~ly~Yr~~ 218 (328)
T PRK10073 147 LSGPDWLRMALSSRRWTH---VVWLGVYRRDFIVKNNIKFEPGLH---HQDIPWTTEVMFNALRVRYTEQSLYKYYLH 218 (328)
T ss_pred echHHHHHHHHhhCCCCc---cHhHHHHHHHHHHHcCCccCCCCE---eccHHHHHHHHHHCCEEEEECCCEEEEEec
Confidence 011110000000000101 12245899999999884 777765 599999999999999999999877765444
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.95 E-value=1.1e-27 Score=200.36 Aligned_cols=165 Identities=27% Similarity=0.444 Sum_probs=145.0
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 165 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~ 165 (372)
||||+||+. +.|.++|+|+.+|+++.. |||||||||++++.+ .++++. .+++++..++|.|+++|+|.|++.
T Consensus 1 vii~~~~~~-~~l~~~l~sl~~~~~~~~--~iiivdd~s~~~~~~-~~~~~~----~~~~~~~~~~~~g~~~a~n~~~~~ 72 (166)
T cd04186 1 IIIVNYNSL-EYLKACLDSLLAQTYPDF--EVIVVDNASTDGSVE-LLRELF----PEVRLIRNGENLGFGAGNNQGIRE 72 (166)
T ss_pred CEEEecCCH-HHHHHHHHHHHhccCCCe--EEEEEECCCCchHHH-HHHHhC----CCeEEEecCCCcChHHHhhHHHhh
Confidence 699999998 999999999999988665 999999999998776 554432 268888888999999999999999
Q ss_pred ccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHHh
Q psy11642 166 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAK 245 (372)
Q Consensus 166 a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (372)
+.+++++|+|+|+.+.++|++.+++.+...+...++...
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 111 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK----------------------------------------- 111 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------------------
Confidence 999999999999999999999999988777654433100
Q ss_pred hccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEe
Q psy11642 246 KRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHV 313 (372)
Q Consensus 246 ~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~ 313 (372)
..|++++++|++++++|+|++.+..+ +||.+|+.|+.++|+++.++|++.++|.
T Consensus 112 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 -------------VSGAFLLVRREVFEEVGGFDEDFFLY-YEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred -------------CceeeEeeeHHHHHHcCCCChhhhcc-ccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 46788999999999999999998764 8999999999999999999999999996
No 28
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.95 E-value=6.5e-28 Score=212.90 Aligned_cols=203 Identities=21% Similarity=0.249 Sum_probs=145.5
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHc-CCcEEEEecC--CCcchHHHHHhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF-NGKVRLIRNT--EREGLIRTRSRG 162 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~-~~~v~~i~~~--~n~G~~~a~n~g 162 (372)
||||+||+. +.|.+||+||+.|++++...|||||||||+|++.+ .++ +.... ..+++++..+ .+.|++.++|.|
T Consensus 1 viip~~n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g 77 (229)
T cd04192 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQ-ILE-FAAAKPNFQLKILNNSRVSISGKKNALTTA 77 (229)
T ss_pred CEEEecCcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHH-HHH-HHHhCCCcceEEeeccCcccchhHHHHHHH
Confidence 699999999 99999999999999987334999999999999877 666 33332 3468888765 478999999999
Q ss_pred hhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHH
Q psy11642 163 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER 242 (372)
Q Consensus 163 ~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (372)
++.+++|||+|+|+|+.+.|+||+.+++.+.+++..++++.........+.. .+ ..+.+.....
T Consensus 78 ~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~-~~~~~~~~~~------- 141 (229)
T cd04192 78 IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLA--------KF-QRLDWLSLLG------- 141 (229)
T ss_pred HHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHH--------HH-HHHHHHHHHH-------
Confidence 9999999999999999999999999999888777665554332111110000 00 0000000000
Q ss_pred HHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCC-eEEEEcccEEE
Q psy11642 243 EAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGG-SIEWVPCSRIG 311 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~-~i~~~p~~~v~ 311 (372)
..... ..........|++++++|++|+++||||+.+..+ .||.|+++|+.++|+ ++.+++...+.
T Consensus 142 ~~~~~---~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~~~~~-~eD~~~~~~~~~~g~~~~~~~~~~~~~ 207 (229)
T cd04192 142 LIAGS---FGLGKPFMCNGANMAYRKEAFFEVGGFEGNDHIA-SGDDELLLAKVASKYPKVAYLKNPEAL 207 (229)
T ss_pred HHhhH---HHhcCccccccceEEEEHHHHHHhcCCccccccc-cCCHHHHHHHHHhCCCCEEEeeCcchh
Confidence 00000 0000122346888999999999999999877654 899999999999999 88887554333
No 29
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.95 E-value=1.7e-27 Score=213.68 Aligned_cols=207 Identities=19% Similarity=0.216 Sum_probs=157.1
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHH
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 158 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a 158 (372)
...|++|||||+||++ +.|.+||+|+++|+++....|||||||+|+|++.+ .++++.+. +++++..+.|.|+++|
T Consensus 26 ~~~~~isVvip~~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~-~~~~~~~~---~v~~i~~~~~~g~~~a 100 (251)
T cd06439 26 AYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAE-IAREYADK---GVKLLRFPERRGKAAA 100 (251)
T ss_pred CCCCEEEEEEecCCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHH-HHHHHhhC---cEEEEEcCCCCChHHH
Confidence 5578899999999999 99999999999999877446999999999999887 78777654 5889989899999999
Q ss_pred HHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCC
Q psy11642 159 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENE 238 (372)
Q Consensus 159 ~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (372)
+|.|++.+++|||+|+|+|+.+.++||+.+++.+.++...++++.....+... . .....+.|...
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~--~--------~~~~~~~~~~~----- 165 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGG--S--------GSGEGLYWKYE----- 165 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcc--c--------chhHHHHHHHH-----
Confidence 99999999999999999999999999999999997666666666554333221 0 00000001000
Q ss_pred CcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccC
Q psy11642 239 LPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~ 316 (372)
....... ..........|++++++|++++ +|+.... .||.+++.++.++|+++.++|.+.++|....
T Consensus 166 --~~~~~~~---~~~~~~~~~~g~~~~~rr~~~~---~~~~~~~---~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~ 232 (251)
T cd06439 166 --NWLKRAE---SRLGSTVGANGAIYAIRRELFR---PLPADTI---NDDFVLPLRIARQGYRVVYEPDAVAYEEVAE 232 (251)
T ss_pred --HHHHHHH---HhcCCeeeecchHHHhHHHHhc---CCCcccc---hhHHHHHHHHHHcCCeEEeccccEEEEeCcc
Confidence 0000000 0011134467888999999998 5655432 6999999999999999999999999987544
No 30
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.95 E-value=1.7e-27 Score=211.72 Aligned_cols=201 Identities=16% Similarity=0.135 Sum_probs=146.4
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 165 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~ 165 (372)
+|||+||+..+.|.+||+|+++| .. |||||||+|++.+.. ..+ + ...++++++.++|.|+++|+|.|++.
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q---~~--~iivvDn~s~~~~~~-~~~-~---~~~~i~~i~~~~n~G~~~a~N~g~~~ 70 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ---VD--KVVVVDNSSGNDIEL-RLR-L---NSEKIELIHLGENLGIAKALNIGIKA 70 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc---CC--EEEEEeCCCCccHHH-Hhh-c---cCCcEEEEECCCceehHHhhhHHHHH
Confidence 58999998878999999999998 33 999999999876543 322 2 23579999999999999999999999
Q ss_pred ccC---cEEEEecCCcccCCCChHHHH---HhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccccccccccCC
Q psy11642 166 SRG---EVIVFLDAHCEVGLNWLPPLL---APIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENE 238 (372)
Q Consensus 166 a~g---d~i~flD~D~~~~~~~L~~ll---~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (372)
|++ |||+|+|+|+.++|+||++++ ..+..++..+++ |.+...+......... ...+.. ..
T Consensus 71 a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~--- 137 (237)
T cd02526 71 ALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVR---------KSGYKL-RI--- 137 (237)
T ss_pred HHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeecccee---------ccCccc-ee---
Confidence 987 999999999999999999995 555555554444 5443322211100000 000000 00
Q ss_pred CcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCC
Q psy11642 239 LPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSF 317 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~ 317 (372)
.............+.+++++++|++|+++||||+.+.. ++||+||++|+.++|+++.++|.+.++|.....
T Consensus 138 -------~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~-~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~~~ 208 (237)
T cd02526 138 -------QKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLFI-DYVDTEWCLRARSKGYKIYVVPDAVLKHELGDK 208 (237)
T ss_pred -------cccccCCceEeeeeeccceEEcHHHHHHhCCCCHHHcC-ccchHHHHHHHHHcCCcEEEEcCeEEEecccCc
Confidence 00000111224455677889999999999999999875 489999999999999999999999999975543
No 31
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.95 E-value=1.4e-27 Score=217.31 Aligned_cols=212 Identities=24% Similarity=0.362 Sum_probs=149.1
Q ss_pred EEEEEecCCCh-----hHHHHHHHHHHccC-CcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC---cch
Q psy11642 85 SVILVFHNEGF-----SSLMRTVHSIIKRT-PAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER---EGL 155 (372)
Q Consensus 85 SVIIp~yn~~~-----~~l~~~l~Sl~~qt-~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n---~G~ 155 (372)
|||||++++.. +.|..||.++..+. .++ .||||||+||++...+ .++++.+... ..+++..+.. .|.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~--~eiIvvd~~s~~~~~~-~l~~~~~~~~-~~~~i~~~~~~~~f~~ 76 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPD--FEIIVVDDGSSDEFDE-ELKKLCEKNG-FIRYIRHEDNGEPFSR 76 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCC--EEEEEEECCCchhHHH-HHHHHHhccC-ceEEEEcCCCCCCcCH
Confidence 79999999871 24666678877743 444 5999999999987655 7777777643 3335555433 699
Q ss_pred HHHHHhhhhhccCcEEEEecCCcccCCCChHHHHH---hhhcCCC-EEEeeeeecccCCcceeeeccCCCCccccccccc
Q psy11642 156 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRK-IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWG 231 (372)
Q Consensus 156 ~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~---~~~~~~~-~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
+.|||.|++.|++|+|+|+|+|+.++|++++.+++ .+..++. .++.|........+....... ...|.
T Consensus 77 a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~--------~~~~~ 148 (281)
T PF10111_consen 77 AKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQF--------KNLWD 148 (281)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcc--------hhcch
Confidence 99999999999999999999999999999999999 6666654 445565432211111110000 00000
Q ss_pred cccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEE
Q psy11642 232 MLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIG 311 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~ 311 (372)
... .. .........+....+.|+|++++|+.|.++|||||.|.+||+||.||+.|+.+.|..+...+...++
T Consensus 149 ~~~-------~~-~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~ 220 (281)
T PF10111_consen 149 HEF-------LE-SFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVY 220 (281)
T ss_pred HHH-------HH-HHhhccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcc
Confidence 000 00 0000011112234556799999999999999999999999999999999999999999999999998
Q ss_pred EeccC
Q psy11642 312 HVYRS 316 (372)
Q Consensus 312 H~~~~ 316 (372)
|....
T Consensus 221 ~~~~~ 225 (281)
T PF10111_consen 221 HSHRW 225 (281)
T ss_pred cccCC
Confidence 86443
No 32
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.95 E-value=1.6e-27 Score=212.89 Aligned_cols=216 Identities=19% Similarity=0.104 Sum_probs=154.9
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC-CcEEEEecCCCcchHH
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGLIR 157 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~-~~v~~i~~~~n~G~~~ 157 (372)
...|.+|||||+||++ +.|..+++++.++......+|||||||||+|+|.+ +++++.++++ ..++++..+.|.|+++
T Consensus 6 ~~~~~vsVvIp~yne~-~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~-i~~~~~~~~~~~~v~~~~~~~n~G~~~ 83 (243)
T PLN02726 6 EGAMKYSIIVPTYNER-LNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQD-VVKQLQKVYGEDRILLRPRPGKLGLGT 83 (243)
T ss_pred CCCceEEEEEccCCch-hhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHH-HHHHHHHhcCCCcEEEEecCCCCCHHH
Confidence 3468899999999999 99999999987643221134999999999999987 8888887654 3688888889999999
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 158 a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
|+|.|++.|+|+||+|+|+|+.+.|++|+.+++.+.++...++++.....++. .......+......
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~-------~~~~~~~r~~~~~~------ 150 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGG-------VHGWDLRRKLTSRG------ 150 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCC-------cCCccHHHHHHHHH------
Confidence 99999999999999999999999999999999998776666555432111000 00000000000000
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCC
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSF 317 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~ 317 (372)
. ........ ........|+|++++|+++++++.+.+.... ..|+||++|+..+|+++..+|...+.|..+.+
T Consensus 151 --~-~~~~~~~~---~~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~--~~~~el~~~~~~~g~~i~~vp~~~~~r~~g~s 222 (243)
T PLN02726 151 --A-NVLAQTLL---WPGVSDLTGSFRLYKRSALEDLVSSVVSKGY--VFQMEIIVRASRKGYRIEEVPITFVDRVYGES 222 (243)
T ss_pred --H-HHHHHHHh---CCCCCcCCCcccceeHHHHHHHHhhccCCCc--EEehHHHHHHHHcCCcEEEeCcEEeCCCCCcc
Confidence 0 00000000 0123346788999999999999865553322 46899999999999999999998888765543
No 33
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.95 E-value=2.7e-27 Score=208.51 Aligned_cols=203 Identities=22% Similarity=0.233 Sum_probs=148.0
Q ss_pred EEEEecCCChhHHHHHHHHHHccCC-cCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTP-AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~-~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~ 164 (372)
||||+||++ ..|.++|+|+.+|++ ... |||||||||+|++.+ .++++.+..+ .+++++++.|.|++.|+|.|++
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~~--eiiiVDd~S~d~t~~-~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~ 75 (224)
T cd06442 1 IIIPTYNER-ENIPELIERLDAALKGIDY--EIIVVDDNSPDGTAE-IVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFK 75 (224)
T ss_pred CeEeccchh-hhHHHHHHHHHHhhcCCCe--EEEEEeCCCCCChHH-HHHHHHHhCC-ceEEEecCCCCChHHHHHHHHH
Confidence 699999999 999999999999997 444 999999999999887 8888887754 6889989999999999999999
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccccccccccCCCcHHH
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 243 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
.|+||+|+|+|+|+.+.|+||+.+++.+...+..+++ +.... ... . ..|....+... ....
T Consensus 76 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~-~~~-~---------------~~~~~~~~~~~-~~~~ 137 (224)
T cd06442 76 AARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVE-GGG-V---------------EGWGLKRKLIS-RGAN 137 (224)
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeec-CCc-c---------------CCCcHHHHHHH-HHHH
Confidence 9999999999999999999999999996555444444 32211 000 0 00110000000 0000
Q ss_pred HhhccCCCCcccCccccccchhccHHHHHHhc-CCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccC
Q psy11642 244 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iG-gfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~ 316 (372)
....... ........|++++++|++++++| .++...+ .+|+||++|++++|+++.++|...+.|....
T Consensus 138 ~~~~~~~--~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~---~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~ 206 (224)
T cd06442 138 LLARLLL--GRKVSDPTSGFRAYRREVLEKLIDSLVSKGY---KFQLELLVRARRLGYRIVEVPITFVDREHGE 206 (224)
T ss_pred HHHHHHc--CCCCCCCCCccchhhHHHHHHHhhhccCCCc---EEeHHHHHHHHHcCCeEEEeCeEEeccCCCc
Confidence 0000000 11234456889999999999998 4443222 3588999999999999999998888776544
No 34
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.95 E-value=2.9e-27 Score=206.54 Aligned_cols=202 Identities=18% Similarity=0.152 Sum_probs=149.6
Q ss_pred EEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhh
Q psy11642 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 85 SVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~ 164 (372)
|||||+||++ ..|.+||+||++|+++.+ |||||||||+|+|.+ +++++..+++..++++.++.|.|.++++|.|+.
T Consensus 1 sIvIp~yn~~-~~l~~~l~sl~~q~~~~~--eiiVvddgS~d~t~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~ 76 (214)
T cd04196 1 AVLMATYNGE-KYLREQLDSILAQTYKND--ELIISDDGSTDGTVE-IIKEYIDKDPFIIILIRNGKNLGVARNFESLLQ 76 (214)
T ss_pred CEEEEecCcH-HHHHHHHHHHHhCcCCCe--EEEEEeCCCCCCcHH-HHHHHHhcCCceEEEEeCCCCccHHHHHHHHHH
Confidence 6999999999 999999999999998866 999999999999887 899998876556888888899999999999999
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhcCCCE-EEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHH
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 243 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~-~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
.++|+||+|+|+|+.+.|++|+.+++.+..++.. ++++.....+....... ...+ ....... .....
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~-~~~~~- 144 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIG---------ESFF-EYQKIKP-GTSFN- 144 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcc---------cccc-cccccCC-ccCHH-
Confidence 9999999999999999999999999996555543 33332211111100000 0000 0000000 00000
Q ss_pred HhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEe
Q psy11642 244 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHV 313 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~ 313 (372)
.......+.|++++++|++++++|+|++.... .||+++.+++.. |+++.++|...+.|.
T Consensus 145 --------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~D~~~~~~~~~-~~~~~~~~~~~~~~r 203 (214)
T cd04196 145 --------NLLFQNVVTGCTMAFNRELLELALPFPDADVI--MHDWWLALLASA-FGKVVFLDEPLILYR 203 (214)
T ss_pred --------HHHHhCccCCceeeEEHHHHHhhccccccccc--cchHHHHHHHHH-cCceEEcchhHHHHh
Confidence 00113345688899999999999999987532 799999998877 678999998877543
No 35
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.95 E-value=5e-27 Score=236.65 Aligned_cols=210 Identities=14% Similarity=0.155 Sum_probs=151.4
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC-cchHH
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-EGLIR 157 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n-~G~~~ 157 (372)
...|+|||+||+|||+.+.+.++|.++++++||....||+|+||||+|++.+ ++++. ++++++.++| .|+++
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~-----la~~~--~v~yI~R~~n~~gKAG 329 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQ-----FAQEV--GVKYIARPTHEHAKAG 329 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHH-----HHHHC--CcEEEEeCCCCcchHH
Confidence 4568999999999998556788999999999997667999999999998755 44443 5888877655 56999
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCcccccccccccccc
Q psy11642 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKE 236 (372)
Q Consensus 158 a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (372)
++|.|+++++||||+++|+|+++.+++|+.++..+.+++..+++ +.....+.+.+... .+. .....+-...+.
T Consensus 330 nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rn--l~~---~~~~~~e~~~fy- 403 (852)
T PRK11498 330 NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERN--LGR---FRKTPNEGTLFY- 403 (852)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHh--hHH---HhhcccchhHHH-
Confidence 99999999999999999999999999999999998777776554 22212222111000 000 000000000000
Q ss_pred CCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEE
Q psy11642 237 NELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312 (372)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H 312 (372)
.... .....+....++|+|+++||++++++||||++.. .||+|+++|+.++|+++.+++.+.+..
T Consensus 404 ----~~iq----~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~ti---tED~dlslRL~~~Gyrv~yl~~~~a~g 468 (852)
T PRK11498 404 ----GLVQ----DGNDMWDATFFCGSCAVIRRKPLDEIGGIAVETV---TEDAHTSLRLHRRGYTSAYMRIPQAAG 468 (852)
T ss_pred ----HHHH----hHHHhhcccccccceeeeEHHHHHHhcCCCCCcc---CccHHHHHHHHHcCCEEEEEeccceeE
Confidence 0000 0011122345689999999999999999999853 699999999999999999998877763
No 36
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.95 E-value=1.7e-26 Score=202.90 Aligned_cols=185 Identities=22% Similarity=0.271 Sum_probs=136.7
Q ss_pred eEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 84 vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
||||||+||++ ..|.++|+|+++|+++.. |||||||+|+|++.+ .+++ ..++++. .+.|.+.++|.|+
T Consensus 1 vsvii~~~n~~-~~l~~~l~sl~~q~~~~~--evivvdd~s~d~~~~-~~~~------~~~~~~~--~~~g~~~a~n~g~ 68 (221)
T cd02522 1 LSIIIPTLNEA-ENLPRLLASLRRLNPLPL--EIIVVDGGSTDGTVA-IARS------AGVVVIS--SPKGRARQMNAGA 68 (221)
T ss_pred CEEEEEccCcH-HHHHHHHHHHHhccCCCc--EEEEEeCCCCccHHH-HHhc------CCeEEEe--CCcCHHHHHHHHH
Confidence 69999999999 899999999999998666 999999999998876 4443 2566664 4678999999999
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHH
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 243 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
+.|++++|+|+|+|+.+.++|+++++..+......++++.....+.... .. .....+...
T Consensus 69 ~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~---------- 128 (221)
T cd02522 69 AAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPGPR-LR---------LLELGANLR---------- 128 (221)
T ss_pred HhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCccc-hh---------hhhhcccce----------
Confidence 9999999999999999999999999887776665444433322111100 00 000000000
Q ss_pred HhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEE
Q psy11642 244 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H 312 (372)
...... ...+++++++|++|.++||||+.+ . +||+||++|++++|+++.+ |...+.+
T Consensus 129 -------~~~~~~-~~~~~~~~~r~~~~~~~G~fd~~~-~--~ED~d~~~r~~~~G~~~~~-~~~~~~~ 185 (221)
T cd02522 129 -------SRLFGL-PYGDQGLFIRRELFEELGGFPELP-L--MEDVELVRRLRRRGRPALL-PSPVTTS 185 (221)
T ss_pred -------ecccCC-CcCCceEEEEHHHHHHhCCCCccc-c--ccHHHHHHHHHhCCCEEEc-Cceeeec
Confidence 000111 123457899999999999999998 2 7999999999999999877 6555554
No 37
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.94 E-value=2.6e-26 Score=232.69 Aligned_cols=215 Identities=16% Similarity=0.201 Sum_probs=154.9
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhh-------------HHHHHHHHHHcCCcEE
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADL-------------DQKLEDYIQRFNGKVR 145 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~-------------~~~l~~~~~~~~~~v~ 145 (372)
...|+|||+||+|||+.+.+.+||.++++++||....||+||||||+|+|. .+.+++++++. +++
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~--~v~ 205 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL--GVN 205 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc--CcE
Confidence 567899999999999844557899999999999656699999999999872 23567777764 688
Q ss_pred EEecCCC-cchHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe--eeeecccCCcceeeeccCCCC
Q psy11642 146 LIRNTER-EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV--PVIDGIDYQTWEFRSVYEPDH 222 (372)
Q Consensus 146 ~i~~~~n-~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~--p~i~~~~~~~~~~~~~~~~~~ 222 (372)
+++.++| .++++++|.|+++++||||+++|+|+.+.+++|++++..+.+++..+++ |.. ..+.+.+.....
T Consensus 206 yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~-f~~p~~~~~nl~----- 279 (713)
T TIGR03030 206 YITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHF-FVSPDPIERNLG----- 279 (713)
T ss_pred EEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCee-ccCCCHHhhhhH-----
Confidence 8887777 4689999999999999999999999999999999999999877775544 321 111111100000
Q ss_pred ccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeE
Q psy11642 223 HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSI 302 (372)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i 302 (372)
...........+ ...... .........++|+++++||++++++|||+++.. .||+++++|+..+|+++
T Consensus 280 ~~~~~~~e~~~f-----~~~i~~----g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~~~v---tED~~l~~rL~~~G~~~ 347 (713)
T TIGR03030 280 TFRRMPNENELF-----YGLIQD----GNDFWNAAFFCGSAAVLRREALDEIGGIAGETV---TEDAETALKLHRRGWNS 347 (713)
T ss_pred HHHHhhhHHHHH-----HHHHHH----HHhhhCCeeecCceeEEEHHHHHHcCCCCCCCc---CcHHHHHHHHHHcCCeE
Confidence 000000000000 000000 001122345678899999999999999998764 69999999999999999
Q ss_pred EEEcccEEEEe
Q psy11642 303 EWVPCSRIGHV 313 (372)
Q Consensus 303 ~~~p~~~v~H~ 313 (372)
.++|.+.+++.
T Consensus 348 ~y~~~~~~~g~ 358 (713)
T TIGR03030 348 AYLDRPLIAGL 358 (713)
T ss_pred EEecccccccc
Confidence 99998888753
No 38
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.94 E-value=8.4e-26 Score=201.51 Aligned_cols=192 Identities=15% Similarity=0.097 Sum_probs=136.9
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHcc---CCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHH
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKR---TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 158 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~q---t~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a 158 (372)
|.+|||||+||++ +.|.+||+||.+| ++.++ |||||||||+|+|.+ +++++... .+++++.. +|.|.++|
T Consensus 1 ~~vSVIi~~yN~~-~~l~~~l~sl~~~~~~~~~~~--EiIVvDdgStD~t~~-i~~~~~~~--~~i~~i~~-~~~G~~~A 73 (248)
T PRK10063 1 MLLSVITVAFRNL-EGIVKTHASLRHLAQDPGISF--EWIVVDGGSNDGTRE-FLENLNGI--FNLRFVSE-PDNGIYDA 73 (248)
T ss_pred CeEEEEEEeCCCH-HHHHHHHHHHHHHHhCCCCCE--EEEEEECcCcccHHH-HHHHhccc--CCEEEEEC-CCCCHHHH
Confidence 6799999999999 9999999999854 34555 999999999999988 88877543 25888875 57799999
Q ss_pred HHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCC
Q psy11642 159 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENE 238 (372)
Q Consensus 159 ~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (372)
+|.|++.|+||||+|||+|+.+.|+.++.+......++..++++......+...... +..
T Consensus 74 ~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~---------~~~----------- 133 (248)
T PRK10063 74 MNKGIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGDGHKIK---------RSA----------- 133 (248)
T ss_pred HHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcCCCcEEE---------Ecc-----------
Confidence 999999999999999999999999887654444444445444432211111100000 000
Q ss_pred CcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEE
Q psy11642 239 LPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H 312 (372)
.+... ... ..+ ..+.+++++++.+.. |+||+.+.. .||+||++|+...|+++..+|......
T Consensus 134 ~~~~~-~~~-------~~~-~~~~~~~~~~~~~~~-~~fd~~~~~--~~Dydl~lrl~~~g~~~~~v~~~l~~y 195 (248)
T PRK10063 134 KPGWY-IYH-------SLP-ASHQAIFFPVSGLKK-WRYDLQYKV--SSDYALAARLYKAGYAFKKLNGLVSEF 195 (248)
T ss_pred CChhH-Hhc-------CCC-CCCcEEEEEHHHHhc-CCCCcccch--HHhHHHHHHHHHcCCcEEEcCceeEEE
Confidence 00000 000 011 123356788998874 789998865 799999999999999999999887764
No 39
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.93 E-value=1.3e-25 Score=199.37 Aligned_cols=205 Identities=17% Similarity=0.128 Sum_probs=144.2
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhh
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 162 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g 162 (372)
.||||||+||+..+.|.+||+|+.+|+ +. |||||||+|+|++.+ .++... . ...+.++. .++.|++.|+|.|
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~--~~--eiivvdd~s~d~~~~-~l~~~~-~-~~~~~v~~-~~~~g~~~a~n~g 72 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK--PL--EIIVVTDGDDEPYLS-ILSQTV-K-YGGIFVIT-VPHPGKRRALAEG 72 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC--CC--EEEEEeCCCChHHHH-HHHhhc-c-CCcEEEEe-cCCCChHHHHHHH
Confidence 489999999997689999999999998 34 999999999998877 553332 2 23566664 5789999999999
Q ss_pred hhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHH
Q psy11642 163 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER 242 (372)
Q Consensus 163 ~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (372)
++.|++|+|+|+|+|+.+.++||+.+++.+.+....++++.+...+...... ......+-+... ...
T Consensus 73 ~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~ 139 (235)
T cd06434 73 IRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKW-------SFLAAEYLERRN------EEI 139 (235)
T ss_pred HHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHH-------HHHHHHHHHHHH------HHH
Confidence 9999999999999999999999999999998444455555443222210000 000000000000 000
Q ss_pred HHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCC--------cccchhhHHHHHHHHHcCCeEEEEcccEEEEe
Q psy11642 243 EAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGL--------LVWGGENFELSFKIWMCGGSIEWVPCSRIGHV 313 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~--------~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~ 313 (372)
.. ..........++|+++++||++++++++ ++.+ ....+||.+|+.|+.+.|+++.+.|.+.++|.
T Consensus 140 ~~----~~~~~~~~~~~~G~~~~~rr~~l~~~~~-~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (235)
T cd06434 140 RA----AMSYDGGVPCLSGRTAAYRTEILKDFLF-LEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTE 213 (235)
T ss_pred HH----HHhhCCCEEEccCcHHHHHHHHHhhhhh-HHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEE
Confidence 00 0001112345678999999999998763 3332 11237999999999999999999999999986
No 40
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.4e-24 Score=208.90 Aligned_cols=210 Identities=23% Similarity=0.252 Sum_probs=159.2
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec-CCCcchHHHH
Q psy11642 81 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-TEREGLIRTR 159 (372)
Q Consensus 81 ~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~-~~n~G~~~a~ 159 (372)
.|++||+||+|||+.+.+.+++.|+.+|+|+.. ||+||||+|+|++.+ .+++...+++.+++++.. ..+.|+++|.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~--evivv~d~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~gK~~al 129 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY--EVIVVDDGSTDETYE-ILEELGAEYGPNFRVIYPEKKNGGKAGAL 129 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCc--eEEEECCCCChhHHH-HHHHHHhhcCcceEEEeccccCccchHHH
Confidence 599999999999994499999999999999987 999999999999988 999998886446777744 5789999999
Q ss_pred HhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCC
Q psy11642 160 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENEL 239 (372)
Q Consensus 160 n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (372)
|.|+..+++|+|+++|+|..+++|+|.+++..+..++..+++......+.... . ... ........
T Consensus 130 ~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~--~------~~l-------~~~~~~~~ 194 (439)
T COG1215 130 NNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDP--S------NLL-------GRIQAIEY 194 (439)
T ss_pred HHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCCh--h------hhc-------chhcchhh
Confidence 99999999999999999999999999999999998887744422111111000 0 000 00000000
Q ss_pred cHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEE
Q psy11642 240 PEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIG 311 (372)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~ 311 (372)
...................+.|++.++||++++++|||++... .||.++++++..+|+++.++|++.+.
T Consensus 195 ~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i---~ED~~lt~~l~~~G~~~~~~~~~~~~ 263 (439)
T COG1215 195 LSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGGWLEDTI---TEDADLTLRLHLRGYRVVYVPEAIVW 263 (439)
T ss_pred hhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCCCCCCce---eccHHHHHHHHHCCCeEEEeecceEe
Confidence 0000000001111113557789999999999999999999887 69999999999999999999999555
No 41
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.92 E-value=1.6e-24 Score=181.16 Aligned_cols=169 Identities=29% Similarity=0.410 Sum_probs=122.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhh
Q psy11642 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 85 SVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~ 164 (372)
|||||+||+. +.|.+||+|+++|+.... |||||||||++++.+ +++++.+ .+.+++++++++|.|.++++|.|++
T Consensus 1 Svvip~~n~~-~~l~~~l~sl~~q~~~~~--eiivvdd~s~d~~~~-~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~ 75 (169)
T PF00535_consen 1 SVVIPTYNEA-EYLERTLESLLKQTDPDF--EIIVVDDGSTDETEE-ILEEYAE-SDPNIRYIRNPENLGFSAARNRGIK 75 (169)
T ss_dssp EEEEEESS-T-TTHHHHHHHHHHHSGCEE--EEEEEECS-SSSHHH-HHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHH
T ss_pred CEEEEeeCCH-HHHHHHHHHHhhccCCCE--EEEEecccccccccc-ccccccc-ccccccccccccccccccccccccc
Confidence 8999999998 999999999999976666 999999999988877 8888876 3458999999999999999999999
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHH
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREA 244 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (372)
+|+++|++++|+|+++.++||+.+++.+.+++..++++.................. ..+.. ......
T Consensus 76 ~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~------~~~~~~ 142 (169)
T PF00535_consen 76 HAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRF-------SFWNR------FERKIF 142 (169)
T ss_dssp H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTS-------EEEEC------CHCHHH
T ss_pred ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccch-------hhhhh------hhhHHH
Confidence 99999999999999999999999999999977766664433332222111111000 00000 000000
Q ss_pred hhccCCCCcccCccccccchhccHHHHHHhc
Q psy11642 245 KKRKYNSEPYKSPTHAGGLFAMDRAFFLELG 275 (372)
Q Consensus 245 ~~~~~~~~~~~~~~~~G~~~~irr~~~~~iG 275 (372)
............++|++++|++|+++|
T Consensus 143 ----~~~~~~~~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 143 ----NNIRFWKISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp ----HTTHSTTSSEESSSCEEEEEHHHHHCH
T ss_pred ----HhhhcCCcccccccEEEEEHHHHHhhC
Confidence 011223356778899999999999987
No 42
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.92 E-value=1.3e-24 Score=189.82 Aligned_cols=200 Identities=19% Similarity=0.158 Sum_probs=140.2
Q ss_pred EEEEecCCChhHHHHHHHHHHccCC--cCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTP--AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~--~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
||||+||++ +.|.++|+|+++|+. +....|||||||||+|+|.+ .++++.++++..+++++++.|.|+++|+|.|+
T Consensus 1 iiip~yN~~-~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~-~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~ 78 (211)
T cd04188 1 VVIPAYNEE-KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAE-VARKLARKNPALIRVLTLPKNRGKGGAVRAGM 78 (211)
T ss_pred CEEcccChH-HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHH-HHHHHHHhCCCcEEEEEcccCCCcHHHHHHHH
Confidence 699999999 999999999999864 11234999999999999887 89998887664568999999999999999999
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHH
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 243 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
+.|+||||+++|+|+.+++++++.+++.+.+++..++++.......... .....++....+...+ ..
T Consensus 79 ~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~------~~~~~~~~~~~~~~~~-------~~ 145 (211)
T cd04188 79 LAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAV------VKRSWLRNLLGRGFNF-------LV 145 (211)
T ss_pred HHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCccc------ccccHHHHHHHHHHHH-------HH
Confidence 9999999999999999999999999999766665555543221111100 0001111110000000 00
Q ss_pred HhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcc
Q psy11642 244 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 307 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~ 307 (372)
... . ... ......+..+++|+++.++++... ...| .+|.||+.|+.+.|+++..+|.
T Consensus 146 ~~~--~-~~~--~~d~~~g~~~~~r~~~~~~~~~~~-~~~~-~~d~el~~r~~~~g~~~~~vpi 202 (211)
T cd04188 146 RLL--L-GLG--IKDTQCGFKLFTRDAARRLFPRLH-LERW-AFDVELLVLARRLGYPIEEVPV 202 (211)
T ss_pred HHH--c-CCC--CcccccCceeEcHHHHHHHHhhhh-ccce-EeeHHHHHHHHHcCCeEEEcCc
Confidence 000 0 000 111123567899999999875432 2233 5799999999999999999993
No 43
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.91 E-value=5.4e-24 Score=178.94 Aligned_cols=179 Identities=23% Similarity=0.309 Sum_probs=128.1
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 165 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~ 165 (372)
||||+||++ +.|.+||.|+++|+++.. |||||||+|++.+.+ .+.++....+..+.++..+++.|++.++|.|++.
T Consensus 1 Viip~~n~~-~~l~~~l~sl~~q~~~~~--~iivvdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~ 76 (180)
T cd06423 1 IIVPAYNEE-AVIERTIESLLALDYPKL--EVIVVDDGSTDDTLE-ILEELAALYIRRVLVVRDKENGGKAGALNAGLRH 76 (180)
T ss_pred CeecccChH-HHHHHHHHHHHhCCCCce--EEEEEeCCCccchHH-HHHHHhccccceEEEEEecccCCchHHHHHHHHh
Confidence 689999999 999999999999998766 999999999999887 7777766544457788888999999999999999
Q ss_pred ccCcEEEEecCCcccCCCChHHHHHhhhcCCCE-EEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHH
Q psy11642 166 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREA 244 (372)
Q Consensus 166 a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~-~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (372)
+++++|+|+|+|+.+.++||+.++..+..++.. ++++.......... ...... ...+.......
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~--------- 141 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSEN-LLTRLQ-----AIEYLSIFRLG--------- 141 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCc-ceeccc-----hheecceeeee---------
Confidence 999999999999999999999996666655544 44444433222100 000000 00000000000
Q ss_pred hhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhh
Q psy11642 245 KKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN 288 (372)
Q Consensus 245 ~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED 288 (372)
............+.|++++++|++++++||||+.+. +||
T Consensus 142 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~ggf~~~~~---~eD 180 (180)
T cd06423 142 --RRAQSALGGVLVLSGAFGAFRREALREVGGWDEDTL---TED 180 (180)
T ss_pred --eehhheecceeecCchHHHHHHHHHHHhCCccccCc---CCC
Confidence 000001122456788999999999999999999875 466
No 44
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.89 E-value=1.5e-23 Score=178.93 Aligned_cols=182 Identities=19% Similarity=0.169 Sum_probs=131.7
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 165 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~ 165 (372)
||||+||+. +.|.+||+|+.+|+++....|||||||+|+|++.+ .++++..+.+ .++++..++|.|+++|+|.|++.
T Consensus 1 iii~~~n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~-~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~ 77 (185)
T cd04179 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAE-IARELAARVP-RVRVIRLSRNFGKGAAVRAGFKA 77 (185)
T ss_pred CeecccChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHH-HHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHH
Confidence 689999999 99999999999998632234999999999998877 8888887764 67889999999999999999999
Q ss_pred ccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHH
Q psy11642 166 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREA 244 (372)
Q Consensus 166 a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (372)
|+|||++|+|+|+.+.|+||+.++..+...+..+++ +.... +.. ...........+...+ ..
T Consensus 78 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~-~~~--------~~~~~~~~~~~~~~~~--------~~ 140 (185)
T cd04179 78 ARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVR-GGG--------AGMPLLRRLGSRLFNF--------LI 140 (185)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecC-CCc--------ccchHHHHHHHHHHHH--------HH
Confidence 999999999999999999999999996665554444 43321 111 0000000000000000 00
Q ss_pred hhccCCCCcccCccccccchhccHHHHHHh--cCCCCCCcccchhhHHHHHHH
Q psy11642 245 KKRKYNSEPYKSPTHAGGLFAMDRAFFLEL--GGYDPGLLVWGGENFELSFKI 295 (372)
Q Consensus 245 ~~~~~~~~~~~~~~~~G~~~~irr~~~~~i--Ggfd~~~~~~g~ED~dl~~r~ 295 (372)
... .......+.|++++++|++|+++ |++++++. .|+|+++|+
T Consensus 141 ~~~----~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~----~~~~~~~~~ 185 (185)
T cd04179 141 RLL----LGVRISDTQSGFRLFRREVLEALLSLLESNGFE----FGLELLVGA 185 (185)
T ss_pred HHH----cCCCCcCCCCceeeeHHHHHHHHHhhccccCcc----eeeEeeecC
Confidence 000 11224566788999999999999 67777764 577777763
No 45
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.89 E-value=5.5e-23 Score=175.45 Aligned_cols=178 Identities=18% Similarity=0.156 Sum_probs=119.7
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 165 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~ 165 (372)
||||+||++ +.|.+||+|+.+|+++...+|||||||||+|+|.+ +++++ ...+.+...+.+.|++.|+|.|++.
T Consensus 1 VvIp~~ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~-~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~ 74 (183)
T cd06438 1 ILIPAHNEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQ-VARAA----GATVLERHDPERRGKGYALDFGFRH 74 (183)
T ss_pred CEEeccchH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHH-HHHHc----CCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 799999999 99999999999999864456999999999999877 55443 3344444456788999999999997
Q ss_pred cc-----CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCc
Q psy11642 166 SR-----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 240 (372)
Q Consensus 166 a~-----gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
+. +|+|+|+|+|+.++|+||..++..+.++...+.+... ..+. ....+.....+...+. .
T Consensus 75 a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~-~~~~----------~~~~~~~~~~~~~~~~----~ 139 (183)
T cd06438 75 LLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYN-SKNP----------DDSWITRLYAFAFLVF----N 139 (183)
T ss_pred HHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEe-eeCC----------ccCHHHHHHHHHHHHH----H
Confidence 74 9999999999999999999999999876554433221 1100 0001100000000000 0
Q ss_pred HHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHH
Q psy11642 241 EREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFEL 291 (372)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl 291 (372)
........ .........|+++++||+++++ |||++... .||+||
T Consensus 140 ~~~~~~~~---~~~~~~~~~G~~~~~rr~~l~~-~g~~~~~l---~ED~~~ 183 (183)
T cd06438 140 RLRPLGRS---NLGLSCQLGGTGMCFPWAVLRQ-APWAAHSL---TEDLEF 183 (183)
T ss_pred HHHHHHHH---HcCCCeeecCchhhhHHHHHHh-CCCCCCCc---ccccCC
Confidence 00000000 0011224578899999999999 88987554 589875
No 46
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.89 E-value=6.1e-23 Score=183.24 Aligned_cols=185 Identities=18% Similarity=0.092 Sum_probs=128.3
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCc--------CCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchH-
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPA--------QYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLI- 156 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~--------~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~- 156 (372)
||||+|||+...|.++|+||++|+|+ ...+|||||||||+| .|.|+.
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~ 56 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD 56 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence 79999999636999999999999998 345699999999998 122332
Q ss_pred ------HHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEE-EeeeeecccCCcceeeeccCCCCcccc--c
Q psy11642 157 ------RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGIDYQTWEFRSVYEPDHHYRG--I 227 (372)
Q Consensus 157 ------~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~-v~p~i~~~~~~~~~~~~~~~~~~~~~~--~ 227 (372)
.+.|.|+..|++|+|+++|+|+.++++||+.++..+..++..+ +++.+...+.. ...... .
T Consensus 57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~----------~~~~~~~q~ 126 (244)
T cd04190 57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKK----------QGPLVMYQV 126 (244)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCc----------chhHHHhHh
Confidence 3678889999999999999999999999999999997666644 44544322211 000000 0
Q ss_pred cccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCC----------c-------ccchhhHH
Q psy11642 228 FEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGL----------L-------VWGGENFE 290 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~----------~-------~~g~ED~d 290 (372)
+.+.... ..........-.+..++|+++++|+++++++|++...+ . ..-+||.+
T Consensus 127 ~ey~~~~---------~~~~~~~s~~g~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~ 197 (244)
T cd04190 127 FEYAISH---------WLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRI 197 (244)
T ss_pred eehhhhh---------hhcccHHHcCCceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccc
Confidence 0000000 00000001111244678999999999999998765321 0 00179999
Q ss_pred HHHHHHHcCCeEEE--EcccEEEEe
Q psy11642 291 LSFKIWMCGGSIEW--VPCSRIGHV 313 (372)
Q Consensus 291 l~~r~~~~G~~i~~--~p~~~v~H~ 313 (372)
|++++..+|+++.+ .|.+.++..
T Consensus 198 l~~~l~~~G~~~~~~~~~~a~~~~~ 222 (244)
T cd04190 198 LCTLLLKAGPKRKYLYVPGAVAETD 222 (244)
T ss_pred eeHHHhccCCccEEEEecccEEEEE
Confidence 99999999999999 999988754
No 47
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.89 E-value=6.1e-23 Score=174.79 Aligned_cols=177 Identities=19% Similarity=0.180 Sum_probs=129.2
Q ss_pred EEEEecCCChhHHHHHHHHHHccC---CcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRT---PAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 162 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt---~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g 162 (372)
||||+||++ +.|.++|+||.++. +..+ |||||||||+|++.+ .++.+.++.+ +++++...+|.|+++|+|.|
T Consensus 1 viIp~~n~~-~~l~~~l~sl~~~~~~~~~~~--eiivvdd~s~d~t~~-~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g 75 (181)
T cd04187 1 IVVPVYNEE-ENLPELYERLKAVLESLGYDY--EIIFVDDGSTDRTLE-ILRELAARDP-RVKVIRLSRNFGQQAALLAG 75 (181)
T ss_pred CEEeecCch-hhHHHHHHHHHHHHHhcCCCe--EEEEEeCCCCccHHH-HHHHHHhhCC-CEEEEEecCCCCcHHHHHHH
Confidence 699999999 99999998887654 3444 999999999999887 8888887754 79999988999999999999
Q ss_pred hhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHH
Q psy11642 163 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER 242 (372)
Q Consensus 163 ~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (372)
++.|.+||++++|+|+.+.++||+.+++.+..+.. ++++...... .........+. + ....
T Consensus 76 ~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~v~g~~~~~~------------~~~~~~~~~~~--~----~~~~ 136 (181)
T cd04187 76 LDHARGDAVITMDADLQDPPELIPEMLAKWEEGYD-VVYGVRKNRK------------ESWLKRLTSKL--F----YRLI 136 (181)
T ss_pred HHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCc-EEEEEecCCc------------chHHHHHHHHH--H----HHHH
Confidence 99999999999999999999999999999655443 4443321110 00000000000 0 0000
Q ss_pred HHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHH
Q psy11642 243 EAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFK 294 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r 294 (372)
... .....+...+++++++|++++++|+||+.+.. ..+++++++
T Consensus 137 ~~~------~~~~~~~~~~~~~~~~r~~~~~i~~~d~~~~~--~~~~~~~~~ 180 (181)
T cd04187 137 NKL------SGVDIPDNGGDFRLMDRKVVDALLLLPERHRF--LRGLIAWVG 180 (181)
T ss_pred HHH------cCCCCCCCCCCEEEEcHHHHHHHHhcCCCCcc--HHHHHHHhc
Confidence 000 11224455678899999999999999998875 677777653
No 48
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.88 E-value=1.3e-21 Score=188.68 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=142.0
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHH-ccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC--Ccch
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGL 155 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~-~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~--n~G~ 155 (372)
.+.|++||+||+|||+ +.|.++|+|++ ++.|+++ ||+|+||+|+|+|.+ .+++++++++ +++++..+. ..|+
T Consensus 63 ~~~p~vaIlIPA~NE~-~vI~~~l~s~L~~ldY~~~--eIiVv~d~ndd~T~~-~v~~l~~~~p-~v~~vv~~~~gp~~K 137 (504)
T PRK14716 63 VPEKRIAIFVPAWREA-DVIGRMLEHNLATLDYENY--RIFVGTYPNDPATLR-EVDRLAARYP-RVHLVIVPHDGPTSK 137 (504)
T ss_pred CCCCceEEEEeccCch-hHHHHHHHHHHHcCCCCCe--EEEEEECCCChhHHH-HHHHHHHHCC-CeEEEEeCCCCCCCH
Confidence 4578999999999999 99999999975 5568776 999999999999888 8999888876 566554432 3569
Q ss_pred HHHHHhhhhhc------cC---cEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCcccc
Q psy11642 156 IRTRSRGAKES------RG---EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRG 226 (372)
Q Consensus 156 ~~a~n~g~~~a------~g---d~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~ 226 (372)
+.|.|.|++.+ +| |+|+++|+|+.++|++|..+...+. +...+.+|.+...... .....+
T Consensus 138 a~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~-~~~~VQ~pv~~~~~~~----------~~~~ag 206 (504)
T PRK14716 138 ADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP-RHDFVQLPVFSLPRDW----------GEWVAG 206 (504)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC-CCCEEecceeccCCch----------hHHHHH
Confidence 99999998754 45 9999999999999999998765543 3333333543211000 000000
Q ss_pred ccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHh-----cC-CCCCCcccchhhHHHHHHHHHcCC
Q psy11642 227 IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL-----GG-YDPGLLVWGGENFELSFKIWMCGG 300 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~i-----Gg-fd~~~~~~g~ED~dl~~r~~~~G~ 300 (372)
.+. . .+... .......+... -......|.++++||++++++ |+ ||++.. .||+|+++|+.++|+
T Consensus 207 ~y~-~-ef~~~--~~~~l~~r~~L---G~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sL---TED~dLglRL~~~G~ 276 (504)
T PRK14716 207 TYM-D-EFAES--HLKDLPVREAL---GGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSL---TEDYDIGLRLKRAGF 276 (504)
T ss_pred HHH-H-HHHHH--HHHHHHHHHhc---CCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCc---chHHHHHHHHHHCCC
Confidence 000 0 00000 00000000000 012234688999999999998 33 998865 599999999999999
Q ss_pred eEEEEcccEEE
Q psy11642 301 SIEWVPCSRIG 311 (372)
Q Consensus 301 ~i~~~p~~~v~ 311 (372)
++.++|.+..+
T Consensus 277 rv~y~p~ai~~ 287 (504)
T PRK14716 277 RQIFVRVRADD 287 (504)
T ss_pred EEEEecccccc
Confidence 99999987544
No 49
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.87 E-value=2e-21 Score=180.36 Aligned_cols=209 Identities=19% Similarity=0.182 Sum_probs=141.8
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCC------cCCccEEEEEeCCCCchhhHHHHHHHHHHc---CCcEEEEec
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTP------AQYLEEIILVDDFSSKADLDQKLEDYIQRF---NGKVRLIRN 149 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~------~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~---~~~v~~i~~ 149 (372)
...|.+|||||+||++ +.|.++|+++.++.. +....|||||||||+|+|.+ +++++.+.. +.+++++..
T Consensus 67 ~~~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~-i~~~~~~~~~~~~~~i~vi~~ 144 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLK-VAKDFWRQNINPNIDIRLLSL 144 (333)
T ss_pred CCCeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHH-HHHHHHHhcCCCCCcEEEEEc
Confidence 4568899999999999 999999999876532 22235999999999999988 888888763 236999999
Q ss_pred CCCcchHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhc---CCCEEEeeeeecccCCcceeeeccCCCCcccc
Q psy11642 150 TEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS---DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRG 226 (372)
Q Consensus 150 ~~n~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~---~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~ 226 (372)
++|.|+++|+|.|+++|+||+|+++|+|+..++++++.+++.+.+ +...++++......... .......++.
T Consensus 145 ~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~-----~~~~~~~~r~ 219 (333)
T PTZ00260 145 LRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSD-----VVAKRKWYRN 219 (333)
T ss_pred CCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCc-----ccccCcHHHH
Confidence 999999999999999999999999999999999999999998864 44445554321110000 0000011111
Q ss_pred ccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEc
Q psy11642 227 IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVP 306 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p 306 (372)
...+...+ ....... ....-...+..+++|++++.+=. ......| .-|.|+..++...|.++..+|
T Consensus 220 ~~~~~~~~---------l~~~~~~---~~i~D~~~Gfk~~~r~~~~~i~~-~~~~~~~-~fd~Ell~~a~~~g~~I~EvP 285 (333)
T PTZ00260 220 ILMYGFHF---------IVNTICG---TNLKDTQCGFKLFTRETARIIFP-SLHLERW-AFDIEIVMIAQKLNLPIAEVP 285 (333)
T ss_pred HHHHHHHH---------HHHHHcC---CCcccCCCCeEEEeHHHHHHHhh-hccccCc-cchHHHHHHHHHcCCCEEEEc
Confidence 10000000 0000000 01222234567899999987721 1122223 358999999999999999999
Q ss_pred cc
Q psy11642 307 CS 308 (372)
Q Consensus 307 ~~ 308 (372)
..
T Consensus 286 v~ 287 (333)
T PTZ00260 286 VN 287 (333)
T ss_pred ee
Confidence 64
No 50
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.86 E-value=6.9e-21 Score=169.85 Aligned_cols=208 Identities=12% Similarity=0.101 Sum_probs=135.8
Q ss_pred eEEEEEecCCChhHHHHHHHHHHc----cCC-cCCccEEEEEeCCCCchhhH---HHHHHHHHHcC--CcEEEEecCCCc
Q psy11642 84 ASVILVFHNEGFSSLMRTVHSIIK----RTP-AQYLEEIILVDDFSSKADLD---QKLEDYIQRFN--GKVRLIRNTERE 153 (372)
Q Consensus 84 vSVIIp~yn~~~~~l~~~l~Sl~~----qt~-~~~~~eIIvVDd~S~d~t~~---~~l~~~~~~~~--~~v~~i~~~~n~ 153 (372)
|||+||+||++.+.|..+|.|+.+ |.| +.+ ||+|+||+++++... ..+.+++++++ .++++++..+|.
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~--eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~ 78 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHF--DFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENT 78 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCce--EEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCC
Confidence 699999999995568999988765 665 555 999999998764321 12344555543 468888888887
Q ss_pred c-hHHHHHhhhhh--ccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccc
Q psy11642 154 G-LIRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFE 229 (372)
Q Consensus 154 G-~~~a~n~g~~~--a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (372)
| ++++.|.++.. +++|||+++|+|..+.|++|.+++..+..++..+++ ......+.+++ +.....
T Consensus 79 g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~-----------~~~~~~ 147 (254)
T cd04191 79 GRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETL-----------FARLQQ 147 (254)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCH-----------HHHHHH
Confidence 7 56777777765 788999999999999999999999999877776554 21111121111 000000
Q ss_pred cccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCC--CCccc----chhhHHHHHHHHHcCCeEE
Q psy11642 230 WGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDP--GLLVW----GGENFELSFKIWMCGGSIE 303 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~--~~~~~----g~ED~dl~~r~~~~G~~i~ 303 (372)
..... .......... ........+.|+++++||+.|+++|++++ ++..| -.||+++++++..+|+++.
T Consensus 148 ~~~~~----~~~~~~~~~~--~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~ 221 (254)
T cd04191 148 FANRL----YGPVFGRGLA--AWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVR 221 (254)
T ss_pred HHHHH----HHHHHHHHHH--HhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEE
Confidence 00000 0000000000 00011345678999999999999655542 12122 1699999999999999999
Q ss_pred EEcccEE
Q psy11642 304 WVPCSRI 310 (372)
Q Consensus 304 ~~p~~~v 310 (372)
+.|.+..
T Consensus 222 ~~~~~~~ 228 (254)
T cd04191 222 LAPDLEG 228 (254)
T ss_pred EccCCcc
Confidence 9998754
No 51
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.85 E-value=6.8e-21 Score=174.54 Aligned_cols=207 Identities=20% Similarity=0.201 Sum_probs=130.9
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEE-ecCCCcchHHH
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLI-RNTEREGLIRT 158 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i-~~~~n~G~~~a 158 (372)
..|.+|||||+||++ +.|.++|+|+.+|.......|||||||||+|+|.+ +++++..+.-....++ ..+.|.|++.|
T Consensus 29 ~~~~vSVVIPayNee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~-ia~~~~~~v~~~~~~~~~~~~n~Gkg~A 106 (306)
T PRK13915 29 AGRTVSVVLPALNEE-ETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAE-RAAAAGARVVSREEILPELPPRPGKGEA 106 (306)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHH-HHHHhcchhhcchhhhhccccCCCHHHH
Confidence 457899999999999 99999999999887522234999999999999987 6666533211111222 23678999999
Q ss_pred HHhhhhhccCcEEEEecCCcc-cCCCChHHHHHhhhcCC-CEEEeeeeecccCCcceeeeccCCCCcccccccccccccc
Q psy11642 159 RSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKE 236 (372)
Q Consensus 159 ~n~g~~~a~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~-~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (372)
+|.|++.++||+|+|+|+|+. ++|+||+.+++.+..++ ..++.+........ ....... ..+... ....+
T Consensus 107 ~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~----~~~~~~~--~~gr~~-~~~~~- 178 (306)
T PRK13915 107 LWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRV----SGGVDAT--GGGRVT-ELVAR- 178 (306)
T ss_pred HHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEecccccc----ccccCcC--CCCchH-HHHHH-
Confidence 999999999999999999996 89999999999987444 44444432110000 0000000 000000 00000
Q ss_pred CCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHH-cCC-eEEEEccc
Q psy11642 237 NELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWM-CGG-SIEWVPCS 308 (372)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~-~G~-~i~~~p~~ 308 (372)
.+..... . .. .......+|.+++||++++.+. |++++ +.+.++...+.. .|. ++..++-.
T Consensus 179 -~l~~~~~--~-~l---~~i~dp~sG~~a~rr~~l~~l~-~~~~y----g~e~~~l~~~~~~~g~~~i~~V~l~ 240 (306)
T PRK13915 179 -PLLNLLR--P-EL---AGFVQPLGGEYAGRRELLESLP-FVPGY----GVEIGLLIDTLDRLGLDAIAQVDLG 240 (306)
T ss_pred -HHHHHHH--H-hh---hcccCcchHhHHHHHHHHHhCC-CCCCC----eehHHHHHHHHHHhCcCceEEEEec
Confidence 0000000 0 00 0011123556899999999985 66543 458899999874 686 67776633
No 52
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.85 E-value=5.5e-21 Score=164.23 Aligned_cols=110 Identities=20% Similarity=0.280 Sum_probs=89.8
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC---CCcchHHHHHhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---EREGLIRTRSRG 162 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~---~n~G~~~a~n~g 162 (372)
||||+|||+ +.|.+||+||++|+ +.. |||||||+|+|.|.+ +++ +... ..++++++.. .+.|++.|+|.|
T Consensus 1 ViIp~~Ne~-~~l~~~l~sl~~~~-~~~--eIivvdd~S~D~t~~-~~~-~~~~-~~~v~~i~~~~~~~~~Gk~~aln~g 73 (191)
T cd06436 1 VLVPCLNEE-AVIQRTLASLLRNK-PNF--LVLVIDDASDDDTAG-IVR-LAIT-DSRVHLLRRHLPNARTGKGDALNAA 73 (191)
T ss_pred CEEeccccH-HHHHHHHHHHHhCC-CCe--EEEEEECCCCcCHHH-HHh-heec-CCcEEEEeccCCcCCCCHHHHHHHH
Confidence 799999999 99999999999998 555 999999999999887 666 3222 3478888752 568999999999
Q ss_pred hhhcc-----------CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEee
Q psy11642 163 AKESR-----------GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 202 (372)
Q Consensus 163 ~~~a~-----------gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p 202 (372)
++.++ +++|+|+|+|+.++|+||+.+...+......++.+
T Consensus 74 ~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~ 124 (191)
T cd06436 74 YDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQS 124 (191)
T ss_pred HHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEee
Confidence 99875 37999999999999999999888776433334433
No 53
>KOG2978|consensus
Probab=99.84 E-value=4.8e-20 Score=148.74 Aligned_cols=209 Identities=20% Similarity=0.206 Sum_probs=149.6
Q ss_pred CceEEEEEecCCChhHHHHHHH---HHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC-CcEEEEecCCCcchHH
Q psy11642 82 PKASVILVFHNEGFSSLMRTVH---SIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGLIR 157 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~---Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~-~~v~~i~~~~n~G~~~ 157 (372)
++.|||+|||||. ..|.-++. ....+.-. .+|||||||+|.|+|.+ ..+++++.+. .+|.+.......|++.
T Consensus 3 ~kYsvilPtYnEk-~Nlpi~~~li~~~~~e~~~--~~eiIivDD~SpDGt~~-~a~~L~k~yg~d~i~l~pR~~klGLgt 78 (238)
T KOG2978|consen 3 IKYSVILPTYNEK-ENLPIITRLIAKYMSEEGK--KYEIIIVDDASPDGTQE-VAKALQKIYGEDNILLKPRTKKLGLGT 78 (238)
T ss_pred cceeEEeccccCC-CCCeeeHHHHHhhhhhhcC--ceEEEEEeCCCCCccHH-HHHHHHHHhCCCcEEEEeccCcccchH
Confidence 5789999999998 77664433 33333333 44999999999999998 8898887664 3788887778899999
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 158 a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
|.-.|+.+|+|+|+++||+|-..+|.++.++++...++.-.++.+.- +.+.. |.+.|.+..+.+
T Consensus 79 Ay~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTR-------------Ya~~g---gV~gW~mkRk~I 142 (238)
T KOG2978|consen 79 AYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTR-------------YAGGG---GVYGWDMKRKII 142 (238)
T ss_pred HHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeee-------------EcCCC---ceecchhhHHHH
Confidence 99999999999999999999999999999999998887655544321 11111 234466554433
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcC--CCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEecc
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGG--YDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR 315 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGg--fd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~ 315 (372)
........... .. ..+.-++|++-+.+|++++.+-. -..++ .-.+|+..|+.+.|+.|..+|-+.+...++
T Consensus 143 S~gAn~la~~l--l~-~~~sdltGsFrLykk~vl~~li~e~vSkGy----vfqmEll~ra~~~~y~IgEvPitFvdR~~G 215 (238)
T KOG2978|consen 143 SRGANFLARIL--LN-PGVSDLTGSFRLYKKEVLEKLIEESVSKGY----VFQMELLARARQHGYTIGEVPITFVDRTYG 215 (238)
T ss_pred hhhhHHHHHHh--cc-CCCccCcceeeeehHHHHHhhHHHhhccch----hhhHHHHHhccccCceEeecceEEEeeccc
Confidence 32222111111 11 22456789999999999987641 11222 347899999999999999999888876655
Q ss_pred CC
Q psy11642 316 SF 317 (372)
Q Consensus 316 ~~ 317 (372)
.+
T Consensus 216 eS 217 (238)
T KOG2978|consen 216 ES 217 (238)
T ss_pred cc
Confidence 43
No 54
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.82 E-value=8e-20 Score=169.24 Aligned_cols=118 Identities=24% Similarity=0.245 Sum_probs=100.0
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHH---ccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchH
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLI 156 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~---~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~ 156 (372)
..+++|||||+|||+ +.|.++++++. +|....+ |||||||||+|+|.+ +++++.++.+.+++.+....|.|++
T Consensus 4 ~~~~vSVVIP~yNE~-~~i~~~l~~l~~~~~~~~~~~--EIIvVDDgS~D~T~~-il~~~~~~~~~~v~~i~~~~n~G~~ 79 (325)
T PRK10714 4 PIKKVSVVIPVYNEQ-ESLPELIRRTTAACESLGKEY--EILLIDDGSSDNSAE-MLVEAAQAPDSHIVAILLNRNYGQH 79 (325)
T ss_pred CCCeEEEEEcccCch-hhHHHHHHHHHHHHHhCCCCE--EEEEEeCCCCCcHHH-HHHHHHhhcCCcEEEEEeCCCCCHH
Confidence 346799999999999 99999988774 4554444 999999999999988 8888876655578777778899999
Q ss_pred HHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEee
Q psy11642 157 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 202 (372)
Q Consensus 157 ~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p 202 (372)
+|+|.|+++|+||+++++|+|+..+|++++++++.+.++. .+|++
T Consensus 80 ~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~-DvV~~ 124 (325)
T PRK10714 80 SAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGY-DVVGT 124 (325)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhC-CEEEE
Confidence 9999999999999999999999999999999999997553 34443
No 55
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.79 E-value=1.2e-18 Score=175.01 Aligned_cols=205 Identities=17% Similarity=0.178 Sum_probs=140.8
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHH-ccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC--Ccch
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGL 155 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~-~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~--n~G~ 155 (372)
...|.+||+||+|||+ ..+.+++++++ .++||++ ||+++++++++.|.+ .+++++++++ +++++..++ +.|+
T Consensus 60 ~~~~~vsIlVPa~nE~-~vi~~~i~~ll~~ldYP~~--eI~vi~~~nD~~T~~-~~~~l~~~~p-~~~~v~~~~~g~~gK 134 (727)
T PRK11234 60 PDEKPLAIMVPAWNET-GVIGNMAELAATTLDYENY--HIFVGTYPNDPATQA-DVDAVCARFP-NVHKVVCARPGPTSK 134 (727)
T ss_pred CCCCCEEEEEecCcch-hhHHHHHHHHHHhCCCCCe--EEEEEecCCChhHHH-HHHHHHHHCC-CcEEEEeCCCCCCCH
Confidence 5568999999999999 99999999987 6899986 999999988877777 8999998876 566554444 7899
Q ss_pred HHHHHhhhhhc---------cCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCcccc
Q psy11642 156 IRTRSRGAKES---------RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRG 226 (372)
Q Consensus 156 ~~a~n~g~~~a---------~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~ 226 (372)
+.|.|.|++.+ ..+++++.|+|+.++|+.|. +++.+......+.+|.. ..+.. + .... ...+..
T Consensus 135 a~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~-p~~~~-~--~~~~--~~~~~~ 207 (727)
T PRK11234 135 ADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY-PFERE-W--THFT--SGTYID 207 (727)
T ss_pred HHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc-CCCcc-H--HHHH--HHHHHH
Confidence 99999999987 24678889999999999998 66766654433334422 00000 0 0000 000011
Q ss_pred ccccccccccCCCcHHHHhhccCCCCcccCccccccchhc-cH--HHHHHhc---CCCCCCcccchhhHHHHHHHHHcCC
Q psy11642 227 IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAM-DR--AFFLELG---GYDPGLLVWGGENFELSFKIWMCGG 300 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i-rr--~~~~~iG---gfd~~~~~~g~ED~dl~~r~~~~G~ 300 (372)
.|.+ .+... ..... ... ......|.++++ || +.+.++| +|+.+.. .||+|+++|+...|+
T Consensus 208 EFa~--~~~~~-~~~~~-----~lg---g~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~l---TED~dlg~rL~~~G~ 273 (727)
T PRK11234 208 EFAE--LHGKD-VPVRE-----ALA---GQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSL---TEDYDIGFRLKEKGM 273 (727)
T ss_pred HHHH--Hhhhh-hHHHH-----HcC---CCcccCCceEEEecccHHHHHHhcCCCCcCCCcc---hHHHHHHHHHHHCCC
Confidence 1111 00000 00000 000 122456778899 66 4688888 5888887 599999999999999
Q ss_pred eEEEEcccE
Q psy11642 301 SIEWVPCSR 309 (372)
Q Consensus 301 ~i~~~p~~~ 309 (372)
++.+.|...
T Consensus 274 ~v~f~~~~v 282 (727)
T PRK11234 274 REIFVRFPV 282 (727)
T ss_pred EEEEccccc
Confidence 999998443
No 56
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.77 E-value=1.1e-17 Score=136.84 Aligned_cols=153 Identities=33% Similarity=0.493 Sum_probs=126.8
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhh
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE 165 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~ 165 (372)
|+||++|+. ..+..+|.|+.++++... ||+|+||+|++++.+ .+.++.+.. ..+..+....+.|.+.++|.++..
T Consensus 1 iii~~~~~~-~~l~~~l~s~~~~~~~~~--~i~i~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 75 (156)
T cd00761 1 VIIPAYNEE-PYLERCLESLLAQTYPNF--EVIVVDDGSTDGTLE-ILEEYAKKD-PRVIRVINEENQGLAAARNAGLKA 75 (156)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCccce--EEEEEeCCCCccHHH-HHHHHHhcC-CCeEEEEecCCCChHHHHHHHHHH
Confidence 689999998 999999999999987555 999999999988776 666665431 246677778899999999999999
Q ss_pred ccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHH
Q psy11642 166 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREA 244 (372)
Q Consensus 166 a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (372)
+.+++++++|+|+.+.+++++.++..+..++...++ +.
T Consensus 76 ~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------------------------- 114 (156)
T cd00761 76 ARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP----------------------------------------- 114 (156)
T ss_pred hcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc-----------------------------------------
Confidence 999999999999999999999986655554433221 10
Q ss_pred hhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeE
Q psy11642 245 KKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSI 302 (372)
Q Consensus 245 ~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i 302 (372)
++++++++.++++|++++....+ +||.+++.++...|..+
T Consensus 115 -----------------~~~~~~~~~~~~~~~~~~~~~~~-~ed~~~~~~~~~~g~~~ 154 (156)
T cd00761 115 -----------------GNLLFRRELLEEIGGFDEALLSG-EEDDDFLLRLLRGGKVA 154 (156)
T ss_pred -----------------chheeeHHHHHHhCCcchHhcCC-cchHHHHHHHHhhcccc
Confidence 66899999999999999988765 89999999999888654
No 57
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.76 E-value=7.7e-18 Score=148.93 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=90.4
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhh
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 162 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g 162 (372)
++|||||+||++ ..|.+||+||..|+. |||||||||+|+|.+ ++++ + .++++.. .+.|.+.++|.|
T Consensus 1 ~isvii~~~Ne~-~~l~~~l~sl~~~~~-----eiivvD~gStD~t~~-i~~~----~--~~~v~~~-~~~g~~~~~n~~ 66 (229)
T cd02511 1 TLSVVIITKNEE-RNIERCLESVKWAVD-----EIIVVDSGSTDRTVE-IAKE----Y--GAKVYQR-WWDGFGAQRNFA 66 (229)
T ss_pred CEEEEEEeCCcH-HHHHHHHHHHhcccC-----EEEEEeCCCCccHHH-HHHH----c--CCEEEEC-CCCChHHHHHHH
Confidence 489999999999 999999999988742 999999999999877 5553 2 4777777 899999999999
Q ss_pred hhhccCcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 163 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 163 ~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
+..|+++||+++|+|..+++++++.+++.+.+++.
T Consensus 67 ~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 67 LELATNDWVLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred HHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999988765
No 58
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.75 E-value=3.2e-17 Score=163.84 Aligned_cols=212 Identities=12% Similarity=0.066 Sum_probs=140.4
Q ss_pred CCCCceEEEEEecCCChh----HHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHH---HHHHHHHHcC--CcEEEEec
Q psy11642 79 LDLPKASVILVFHNEGFS----SLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQ---KLEDYIQRFN--GKVRLIRN 149 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~----~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~---~l~~~~~~~~--~~v~~i~~ 149 (372)
...|+|+|+||+|||+.+ .|+.+++|+..|.+++ .+||+|+||++++++... .+++++++++ .++.+.+.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~-~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R 199 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGA-HFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR 199 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCC-CEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 456899999999999842 5888899999887753 359999999999876431 2455666653 36888776
Q ss_pred CCCcc-hHHHHHhhhhh--ccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEee-eeecccCCcceeeeccCCCCccc
Q psy11642 150 TEREG-LIRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP-VIDGIDYQTWEFRSVYEPDHHYR 225 (372)
Q Consensus 150 ~~n~G-~~~a~n~g~~~--a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p-~i~~~~~~~~~~~~~~~~~~~~~ 225 (372)
..|.| ++++.|.+++. +.+||++++|+|..+.+|+|.+++..+..++..+++- .....+.++ .+.
T Consensus 200 ~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~s-----------lfa 268 (691)
T PRK05454 200 RRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADT-----------LFA 268 (691)
T ss_pred CcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCC-----------HHH
Confidence 66655 77788888887 5679999999999999999999999998787765552 111111111 010
Q ss_pred cccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCC--CCcccc----hhhHHHHHHHHHcC
Q psy11642 226 GIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDP--GLLVWG----GENFELSFKIWMCG 299 (372)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~--~~~~~g----~ED~dl~~r~~~~G 299 (372)
....+.... ... .......... .......|.+.++|++.|.+++|+.. +...|+ .||++++.++..+|
T Consensus 269 R~qqf~~~~----y~~-~~~~G~~~w~-~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~G 342 (691)
T PRK05454 269 RLQQFATRV----YGP-LFAAGLAWWQ-GGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAG 342 (691)
T ss_pred HHHHHHHHH----HHH-HHHhhhhhhc-cCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCC
Confidence 000000000 000 0000000000 01334568889999999998876432 122221 58999999999999
Q ss_pred CeEEEEccc
Q psy11642 300 GSIEWVPCS 308 (372)
Q Consensus 300 ~~i~~~p~~ 308 (372)
|++.++|+.
T Consensus 343 yrV~~~pd~ 351 (691)
T PRK05454 343 WGVWLAPDL 351 (691)
T ss_pred CEEEEcCcc
Confidence 999999985
No 59
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=3.6e-17 Score=141.88 Aligned_cols=107 Identities=33% Similarity=0.389 Sum_probs=95.2
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHH
Q psy11642 81 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS 160 (372)
Q Consensus 81 ~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n 160 (372)
+|++|||||+||++ ..|.++|.|+++|++.++ |||||||||+|+|.+ +++++.... ..+.......|.|.+.|+|
T Consensus 2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~~~--eiivvddgs~d~t~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~ 76 (291)
T COG0463 2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGSTDGTTE-IAIEYGAKD-VRVIRLINERNGGLGAARN 76 (291)
T ss_pred CccEEEEEeccchh-hhHHHHHHHHHhhhhcce--EEEEEeCCCCCChHH-HHHHHhhhc-ceEEEeecccCCChHHHHH
Confidence 58899999999999 999999999999999886 999999999999988 888887653 2566777789999999999
Q ss_pred hhhhhccCcEEEEecCCcccCCCChHHHHHhhh
Q psy11642 161 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY 193 (372)
Q Consensus 161 ~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~ 193 (372)
.|+..+.++++.++|+|+. .+..+..+.....
T Consensus 77 ~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~~ 108 (291)
T COG0463 77 AGLEYARGDYIVFLDADDQ-HPPELIPLVAAGG 108 (291)
T ss_pred hhHHhccCCEEEEEccCCC-CCHHHHHHHHHhh
Confidence 9999999999999999999 9988888555543
No 60
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.72 E-value=8.1e-17 Score=159.82 Aligned_cols=195 Identities=13% Similarity=0.158 Sum_probs=131.8
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHH-ccCCcCCccEEEEE---eCCCCchhhHHHHHHHHHHcCCcEEEEecCCC--
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILV---DDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-- 152 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~-~qt~~~~~~eIIvV---Dd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n-- 152 (372)
.+.|.+||+||+|||+ +.+.++|++++ ++.||++ ||+|+ ||+ +|.+ .++++...++ +++++..+.+
T Consensus 68 ~~~~~vsIlVPa~nE~-~VI~~~v~~ll~~ldYp~~--~I~v~~~~nD~---~T~~-~~~~~~~~~p-~~~~v~~~~~gp 139 (703)
T PRK15489 68 RDEQPLAIMVPAWKEY-DVIAKMIENMLATLDYRRY--VIFVGTYPNDA---ETIT-EVERMRRRYK-RLVRVEVPHDGP 139 (703)
T ss_pred cCCCceEEEEeCCCcH-HHHHHHHHHHHhcCCCCCe--EEEEEecCCCc---cHHH-HHHHHhccCC-cEEEEEcCCCCC
Confidence 4557899999999999 99999999986 7799976 99984 555 4454 6777776665 6777766544
Q ss_pred cchHHHHHhhhhhc-------cCc--EEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCc
Q psy11642 153 EGLIRTRSRGAKES-------RGE--VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHH 223 (372)
Q Consensus 153 ~G~~~a~n~g~~~a-------~gd--~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~ 223 (372)
.|++.|+|.|+..+ .++ .|++.|+|+.++|+.|..+ +.+..++..+..|+....+.. ..+
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~~~~~~----------~~~ 208 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLSLERKW----------YEW 208 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeeccCCCcc----------ccH
Confidence 78999999999876 333 3899999999999999876 555555555555654321110 011
Q ss_pred cccccc--cccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHh---c---CCCCCCcccchhhHHHHHHH
Q psy11642 224 YRGIFE--WGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL---G---GYDPGLLVWGGENFELSFKI 295 (372)
Q Consensus 224 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~i---G---gfd~~~~~~g~ED~dl~~r~ 295 (372)
..+.|. +...+.. .++. +.....+ . ..+|..++|+|++++++ | +|+.+.. -||+|+++|+
T Consensus 209 l~~~~~~Efa~~~~~-~l~~-----r~~l~~~--i-pl~Gv~~~frr~aL~~l~~~gg~~~~n~~sL---TED~Dlg~RL 276 (703)
T PRK15489 209 VAGTYMDEFAEWHQK-DLVV-----RESLTGT--V-PSAGVGTCFSRRALLALMKERGNQPFNTSSL---TEDYDFSFRL 276 (703)
T ss_pred HHHHHHHHHHHHhhh-HHHH-----HHHcCCc--e-eccCcceeeeHHHHHHHHHhcCCCCCCCCCc---hHhHHHHHHH
Confidence 111000 0000000 0111 1111111 2 35677899999999887 5 4766665 4999999999
Q ss_pred HHcCCeEEE
Q psy11642 296 WMCGGSIEW 304 (372)
Q Consensus 296 ~~~G~~i~~ 304 (372)
.+.|+++.+
T Consensus 277 ~~~G~r~~f 285 (703)
T PRK15489 277 AELGMQEIF 285 (703)
T ss_pred HHCCCceEE
Confidence 999999988
No 61
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=99.64 E-value=1.7e-15 Score=131.79 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=113.4
Q ss_pred eEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 84 vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
|||||++.| + ..+.+|+.+|.++..++. |+|-|++ .....+.+.+.|+|+
T Consensus 1 isiI~c~n~-~-~~~~~~~~~i~~~~~~~~--~~i~i~~--------------------------~~~~~s~~~~yN~a~ 50 (217)
T PF13712_consen 1 ISIIICVND-E-ELYEECLRSIKRLIGPPG--ELIEIDN--------------------------VRNAKSMAAAYNEAM 50 (217)
T ss_dssp EEEEEEES--H-HHHHHHHHHHHHTT--TE--EEEEEE---------------------------SSS-S-TTTHHHHHG
T ss_pred CEEEEEECC-H-HHHHHHHHHHHhhCCCCc--eEEEEec--------------------------cCCCcCHHHHHHHHH
Confidence 678887766 4 588999999998876654 6666654 223477899999999
Q ss_pred hhccCcEEEEecCCccc-CCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccc-cccc-cccccCCC-
Q psy11642 164 KESRGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGI-FEWG-MLYKENEL- 239 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~-~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~- 239 (372)
+.|+++|++|++.|+.+ .++|+..+++.+.+++..+++++.-..... .....+.+. ..+. ..+.....
T Consensus 51 ~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~~~--------~~~~~w~~~~~~g~~~~~~~~~~~ 122 (217)
T PF13712_consen 51 EKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKRLP--------PNGVWWESPNKVGKVREYGRIMHG 122 (217)
T ss_dssp GG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEESS---------S-TTS---EEEEEETTEEEE----
T ss_pred HhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCcCC--------CCCccccccccccccccccccccc
Confidence 99999999999999987 469999999999778876655443211000 000111000 0000 00000000
Q ss_pred -cHHH--Hhhcc--CCCCcccCccccccchhccHHHHHHhcCCCCC-CcccchhhHHHHHHHHHcCCeEEEEcccEEEEe
Q psy11642 240 -PERE--AKKRK--YNSEPYKSPTHAGGLFAMDRAFFLELGGYDPG-LLVWGGENFELSFKIWMCGGSIEWVPCSRIGHV 313 (372)
Q Consensus 240 -~~~~--~~~~~--~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~-~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~ 313 (372)
+... ..... ....+.++.++-|.+|+++++++ +|||. +..|.+-|+|+|+++.++|++++. +...+.|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~-~~~~~~H~ 197 (217)
T PF13712_consen 123 HGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRVVV-PPPWCIHF 197 (217)
T ss_dssp E-------------ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EEEE------EE-
T ss_pred ccccccccccccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEEEe-cCceEEEc
Confidence 0000 00000 01245667789999999999999 89999 677778999999999999999844 55778886
Q ss_pred ccCCCCCCCCcccccCCCchhhhhHHHHHHHh
Q psy11642 314 YRSFMPYNFGKLADRVKGPLITYNYKRVIETW 345 (372)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~rn~~r~~~~w 345 (372)
-+... .....+.+.++.++|
T Consensus 198 s~g~~------------~~~~~~~~~~~~~ky 217 (217)
T PF13712_consen 198 SGGSF------------DENYYEARKKFLRKY 217 (217)
T ss_dssp S----------------SHHHHHHHHHHHHHH
T ss_pred CCCCc------------cHhHHHHHHHHHhhC
Confidence 33221 123566666777776
No 62
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.54 E-value=1.6e-13 Score=125.53 Aligned_cols=189 Identities=15% Similarity=0.172 Sum_probs=130.1
Q ss_pred eEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC----CC-------
Q psy11642 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT----ER------- 152 (372)
Q Consensus 84 vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~----~n------- 152 (372)
+.|||.+||++ ++|.+||+||++|.+.....+|||.+||+.+++.+ .++.+. ..++++.+. .+
T Consensus 2 ~PVlv~ayNRp-~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~-~v~~~~----~~i~~i~~~~~~~~~~~~~~~~ 75 (334)
T cd02514 2 IPVLVIACNRP-DYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVAD-VAKSFG----DGVTHIQHPPISIKNVNPPHKF 75 (334)
T ss_pred cCEEEEecCCH-HHHHHHHHHHHhccccCCCceEEEEeCCCchHHHH-HHHhhc----cccEEEEcccccccccCccccc
Confidence 57999999999 99999999999984322234999999999877555 665552 246666542 12
Q ss_pred ---cchHH----HHHhhhhhccCcEEEEecCCcccCCC---ChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCC
Q psy11642 153 ---EGLIR----TRSRGAKESRGEVIVFLDAHCEVGLN---WLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDH 222 (372)
Q Consensus 153 ---~G~~~----a~n~g~~~a~gd~i~flD~D~~~~~~---~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~ 222 (372)
.+++. |+|.++..+.++.+++|++|+++.|+ +++.++..++.++.+..+.... .. +. .
T Consensus 76 ~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N---dn--------G~-~ 143 (334)
T cd02514 76 QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN---DN--------GK-E 143 (334)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec---cC--------Cc-c
Confidence 23444 89999988899999999999999999 5577788888887765543221 00 00 0
Q ss_pred ccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHH-cCCe
Q psy11642 223 HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWM-CGGS 301 (372)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~-~G~~ 301 (372)
... .......+++..++|..+|++|+.|+++ ++... .-|+|+++|.-. .-++
T Consensus 144 ~~~---------------------~~~~~~lyrs~ff~glGWml~r~~W~e~---~~~wp---~~~WD~w~R~~~~rkgr 196 (334)
T cd02514 144 HFV---------------------DDTPSLLYRTDFFPGLGWMLTRKLWKEL---EPKWP---KAFWDDWMRLPEQRKGR 196 (334)
T ss_pred ccc---------------------CCCcceEEEecCCCchHHHHHHHHHHHh---CCCCC---CCChHHhhcchhhhcCC
Confidence 000 0001233556677888889999999997 55444 359999999743 3446
Q ss_pred EEEEcc-cEEEEeccCC
Q psy11642 302 IEWVPC-SRIGHVYRSF 317 (372)
Q Consensus 302 i~~~p~-~~v~H~~~~~ 317 (372)
-...|+ ++.+|..+..
T Consensus 197 ~cirPeisRt~~~g~~g 213 (334)
T cd02514 197 ECIRPEISRTYHFGKKG 213 (334)
T ss_pred ccccCCcchheeccccc
Confidence 666675 6788876543
No 63
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=99.48 E-value=1.1e-12 Score=112.06 Aligned_cols=161 Identities=20% Similarity=0.240 Sum_probs=111.3
Q ss_pred ceEEEEEecCCChhHHHHHHHHH---HccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHH
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSI---IKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR 159 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl---~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~ 159 (372)
+++||||.+|+. +.|...|..+ +++. ...+.|+||+.-. ....+.+...
T Consensus 3 ~~aiivpyr~R~-~~l~~~l~~~~~~L~rq--~~~~~i~vi~Q~~-------------------------~~~FNR~~ll 54 (219)
T cd00899 3 KVAIIVPFRNRF-EHLLIFLPHLHPFLQRQ--QLDYRIFVIEQVG-------------------------NFRFNRAKLL 54 (219)
T ss_pred ceEEEEecCCHH-HHHHHHHHHHHHHHHhc--CCcEEEEEEEecC-------------------------Cccchhhhhh
Confidence 589999999998 8888877554 3332 2233666665321 1235567778
Q ss_pred Hhhhhhcc----CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccc
Q psy11642 160 SRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYK 235 (372)
Q Consensus 160 n~g~~~a~----gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
|.|...|. .++++|-|.|..+..+++..-+ .+.+....++.- . +.
T Consensus 55 NvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y~~---~~~p~H~s~~~~-~---------------------~~------ 103 (219)
T cd00899 55 NVGFLEALKDGDWDCFIFHDVDLLPENDRNLYGC---EEGPRHLSVPLD-K---------------------FH------ 103 (219)
T ss_pred hHHHHHHhhcCCccEEEEecccccccCccccccC---CCCCeEEEEeec-c---------------------cc------
Confidence 88777763 5799999999998888755322 333433322210 0 00
Q ss_pred cCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccE--EEEe
Q psy11642 236 ENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSR--IGHV 313 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~--v~H~ 313 (372)
...| .....||+++++|+.|.+++|||+.+..||+||.||+.|++..|.++...+... +.|+
T Consensus 104 --------------~~lp--y~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~~~~~hL 167 (219)
T cd00899 104 --------------YKLP--YKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKMI 167 (219)
T ss_pred --------------cccC--cccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcccceeee
Confidence 0011 224578999999999999999999999999999999999999999999888644 5566
Q ss_pred ccCCC
Q psy11642 314 YRSFM 318 (372)
Q Consensus 314 ~~~~~ 318 (372)
++.+.
T Consensus 168 ~H~~~ 172 (219)
T cd00899 168 RHIHD 172 (219)
T ss_pred ecCCC
Confidence 66543
No 64
>KOG2977|consensus
Probab=99.45 E-value=7.5e-13 Score=114.42 Aligned_cols=204 Identities=20% Similarity=0.182 Sum_probs=127.3
Q ss_pred ceEEEEEecCCC---hhHHHHHHHHHHccC--CcCCccEEEEEeCCCCchhhHHHHHHHHHHcC-CcEEEEecCCCcchH
Q psy11642 83 KASVILVFHNEG---FSSLMRTVHSIIKRT--PAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGLI 156 (372)
Q Consensus 83 ~vSVIIp~yn~~---~~~l~~~l~Sl~~qt--~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~-~~v~~i~~~~n~G~~ 156 (372)
-+|||||+|||+ ...+.+|+.++.... .+++.+||+||||||+|.|.+ +.-++..++. .+++++...+|.|++
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~-~a~k~s~K~~~d~irV~~l~~nrgKG 146 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVE-VALKFSRKLGDDNIRVIKLKKNRGKG 146 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHH-HHHHHHHHcCcceEEEeehhccCCCC
Confidence 699999999997 134566777776443 345677999999999999998 7777775543 589999999999999
Q ss_pred HHHHhhhhhccCcEEEEecCCcc--cCC-CChHHHHHhhhc-C-CCEEEeeeeecccCCcceeeeccCCCCccccccccc
Q psy11642 157 RTRSRGAKESRGEVIVFLDAHCE--VGL-NWLPPLLAPIYS-D-RKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWG 231 (372)
Q Consensus 157 ~a~n~g~~~a~gd~i~flD~D~~--~~~-~~L~~ll~~~~~-~-~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
+|...|+-+++|++++|.|+|.. +++ ..|+..+..... . ...++++.-...... .........+...-..
T Consensus 147 gAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~-----~a~a~rs~~r~iLM~g 221 (323)
T KOG2977|consen 147 GAVRKGMLSSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENT-----EAVAKRSVIRNILMYG 221 (323)
T ss_pred cceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhcc-----HHHHHHhHhhHHHHHH
Confidence 99999999999999999999985 344 445555554432 2 223333322111110 0000000000000000
Q ss_pred cccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEc
Q psy11642 232 MLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVP 306 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p 306 (372)
+-.......... ..-..-++.++.|.....+--++ .+..| .-|.++..-+...+..+..+|
T Consensus 222 -------FH~lv~~~a~rs-----I~DTQcgfklftR~aa~~if~~l-h~e~W-~fdvEll~La~~~~ipi~ei~ 282 (323)
T KOG2977|consen 222 -------FHKLVWIFAIRS-----IRDTQCGFKLFTRAAARRIFPWL-HVERW-AFDVELLYLAKRFTIPIKEIP 282 (323)
T ss_pred -------HHHHHHHHhcCc-----ccccchhHHHhHHHHHHhhcchh-heeee-eccHHHHHHHHHcCCCcEEee
Confidence 000000000000 00112357889999998886443 46677 779998888888888877776
No 65
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.26 E-value=5.1e-12 Score=106.42 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=96.2
Q ss_pred EEecCCCc---chHHHHHhhhhh-ccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCC
Q psy11642 146 LIRNTERE---GLIRTRSRGAKE-SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPD 221 (372)
Q Consensus 146 ~i~~~~n~---G~~~a~n~g~~~-a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~ 221 (372)
++..+... ++..+...|+++ |++|+|+++|+|+.++|+||..|+..+.+.....|+..........+.
T Consensus 6 lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~-------- 77 (175)
T PF13506_consen 6 LVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFW-------- 77 (175)
T ss_pred EEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHH--------
Confidence 44444443 378888889998 999999999999999999999999999885555555322111111100
Q ss_pred CccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCe
Q psy11642 222 HHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGS 301 (372)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~ 301 (372)
......+ . ...+..... .-..+.+.|+++++||+.++++|||+.--... .||+.|..++++.|++
T Consensus 78 ~~l~~~~------~-~~~~~~~~a-------~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~l-adD~~l~~~~~~~G~~ 142 (175)
T PF13506_consen 78 SRLEAAF------F-NFLPGVLQA-------LGGAPFAWGGSMAFRREALEEIGGFEALADYL-ADDYALGRRLRARGYR 142 (175)
T ss_pred HHHHHHH------H-hHHHHHHHH-------hcCCCceecceeeeEHHHHHHcccHHHHhhhh-hHHHHHHHHHHHCCCe
Confidence 0000000 0 000111000 01356778999999999999999998822222 7999999999999999
Q ss_pred EEEEcccEEE
Q psy11642 302 IEWVPCSRIG 311 (372)
Q Consensus 302 i~~~p~~~v~ 311 (372)
+...|...+.
T Consensus 143 v~~~~~~v~~ 152 (175)
T PF13506_consen 143 VVLSPYPVVQ 152 (175)
T ss_pred EEEcchheee
Confidence 9999976553
No 66
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.26 E-value=3e-11 Score=103.74 Aligned_cols=124 Identities=21% Similarity=0.238 Sum_probs=79.9
Q ss_pred EEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHHhhccC
Q psy11642 170 VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 249 (372)
Q Consensus 170 ~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (372)
||+++|+|+.+++++|+++++.+.++...++.+.+...+.+++- .. ...+.+.... . .. ...
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~--~~-------~~~~~~~~~~----~--~~---~~~ 62 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLL--TR-------LQDFEYAISH----G--LS---RLS 62 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChh--he-------eehhhhhhhh----h--hh---HHH
Confidence 68999999999999999999999943444444433221111110 00 0000000000 0 00 000
Q ss_pred CCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEe
Q psy11642 250 NSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHV 313 (372)
Q Consensus 250 ~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~ 313 (372)
.........++|+++++|+++++++|||| ..... +||.|+++|+.++|+++.++|.+.+++.
T Consensus 63 ~~~~~~~~~~~G~~~~~r~~~l~~vg~~~-~~~~~-~ED~~l~~~l~~~G~~~~~~~~~~~~~~ 124 (193)
T PF13632_consen 63 QSSLGRPLFLSGSGMLFRREALREVGGFD-DPFSI-GEDMDLGFRLRRAGYRIVYVPDAIVYTE 124 (193)
T ss_pred HHhcCCCccccCcceeeeHHHHHHhCccc-ccccc-cchHHHHHHHHHCCCEEEEecccceeee
Confidence 01112244578999999999999999999 34343 7999999999999999999999977654
No 67
>KOG3588|consensus
Probab=99.24 E-value=1.9e-10 Score=102.82 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=139.9
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCC-CchhhH-HHHHHHHHHcCCcEEEEecCCCcchH
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFS-SKADLD-QKLEDYIQRFNGKVRLIRNTEREGLI 156 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S-~d~t~~-~~l~~~~~~~~~~v~~i~~~~n~G~~ 156 (372)
-+.|.+.+|+|-..+. ..+.+...++......+. +++||==|+ .++... +.+..++..+. ++..+-..+.+..+
T Consensus 226 i~~pgih~i~pl~gr~-~~f~rf~q~~c~~~d~~l--~l~vv~f~~se~e~ak~e~~tslra~f~-~~q~l~lngeFSRa 301 (494)
T KOG3588|consen 226 IEDPGIHMIMPLRGRA-AIFARFAQSICARGDDRL--ALSVVYFGYSEDEMAKRETITSLRASFI-PVQFLGLNGEFSRA 301 (494)
T ss_pred ccCCCceEEEeccchH-HHhhhhhHHHhccCCCce--EEEEEEecCCChHHHhhhHHHHHhhcCC-ceEEecccchhhhh
Confidence 4568899999999998 999999998887665554 666555444 433322 23445566654 56666665667788
Q ss_pred HHHHhhhhhccC-cEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeec-ccCCcceeeeccCCCCcccccccccccc
Q psy11642 157 RTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG-IDYQTWEFRSVYEPDHHYRGIFEWGMLY 234 (372)
Q Consensus 157 ~a~n~g~~~a~g-d~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (372)
.|+..|++.-.. -.+.|+|.|..++.++|..+-.-.. ....+-.|++-. ++... .|. .
T Consensus 302 ~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt~-~gkqiyfPivFS~ynp~i-vy~-~----------------- 361 (494)
T KOG3588|consen 302 KALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNTI-LGKQIYFPIVFSQYNPEI-VYE-Q----------------- 361 (494)
T ss_pred HHHHhhHHHhccceeEEEeccceeehHHHHHHHhhccC-CCceEEEEEEEeecCcce-eec-C-----------------
Confidence 899999998854 4668899999999988887754432 223344465532 22221 111 0
Q ss_pred ccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEec
Q psy11642 235 KENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVY 314 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~ 314 (372)
..++|......-...+.-++. ..-|..++-|+.|..+||||.....||+||+||..+..+.|.++...|..-+.|++
T Consensus 362 -~~~~p~e~~~~~~~~tGfwRd--fGfGmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~pGl~H~~ 438 (494)
T KOG3588|consen 362 -DKPLPAEQQLVIKKDTGFWRD--FGFGMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPGLFHLW 438 (494)
T ss_pred -CCCCchhHheeeccccccccc--cCCceeEEeeccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecCCCceEEee
Confidence 011121111111111111111 11134467788899999999999999999999999999999999999999999987
Q ss_pred cCC
Q psy11642 315 RSF 317 (372)
Q Consensus 315 ~~~ 317 (372)
+..
T Consensus 439 H~~ 441 (494)
T KOG3588|consen 439 HPK 441 (494)
T ss_pred ccc
Confidence 753
No 68
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=99.11 E-value=3.6e-11 Score=86.30 Aligned_cols=59 Identities=36% Similarity=0.656 Sum_probs=44.9
Q ss_pred CccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEE-EEec
Q psy11642 256 SPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI-GHVY 314 (372)
Q Consensus 256 ~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v-~H~~ 314 (372)
.+.+.||.++++|+.|.++|||||.+..||+||.||+.|+..+|.++...+.+.+ +|+.
T Consensus 16 ~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~ 75 (78)
T PF02709_consen 16 YPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLW 75 (78)
T ss_dssp STT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEE
T ss_pred CCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEe
Confidence 4567899999999999999999999999999999999999999999998877655 5765
No 69
>KOG2547|consensus
Probab=99.05 E-value=5.4e-09 Score=93.98 Aligned_cols=204 Identities=14% Similarity=0.164 Sum_probs=138.7
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCC-cEEEEecCCCcc---
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG--- 154 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~-~v~~i~~~~n~G--- 154 (372)
.++|.||||.|.-.-. +.+..-++|.....|+.+ |++.+-+.++|+..+ +++.+.++++. ..+++.-.+..|
T Consensus 82 ~~LPgVSiikPl~G~d-~nl~~Nlesffts~Y~~~--ElLfcv~s~eDpAi~-vv~~Ll~kyp~VdAklf~gG~~vg~np 157 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVD-PNLYHNLESFFTSQYHKY--ELLFCVESSEDPAIE-VVERLLKKYPNVDAKLFFGGEKVGLNP 157 (431)
T ss_pred CCCCCceEEeecccCC-chhHHhHHHHHhhccCce--EEEEEEccCCCcHHH-HHHHHHhhCCCcceEEEEcccccccCh
Confidence 4789999999999988 899999999998888866 999999999999888 99999999873 346776666666
Q ss_pred hHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCcccccccccccc
Q psy11642 155 LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 234 (372)
Q Consensus 155 ~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (372)
+..+.--|.+.|..|+|++.|+|..+.||.+-.|...+..+...+.+.... |... +++|+-.+.-
T Consensus 158 KInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~p--------y~~d-------r~Gf~atle~ 222 (431)
T KOG2547|consen 158 KINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTP--------YCKD-------RQGFDATLEQ 222 (431)
T ss_pred hhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCc--------eeec-------cccchhhhhh
Confidence 445555689999999999999999999999999999999877665442110 0000 1111110000
Q ss_pred ccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEE
Q psy11642 235 KENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWV 305 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~ 305 (372)
........ ......+...+.+ .+|=..++||+++++.||+.. +..+-.||+=+.-.+...|++..+.
T Consensus 223 ~~fgTsh~-r~yl~~n~~~~~c--~tgms~~mrK~~ld~~ggi~~-f~~yLaedyFaaksllSRG~ksais 289 (431)
T KOG2547|consen 223 VYFGTSHP-RIYLSGNVLGFNC--STGMSSMMRKEALDECGGISA-FGGYLAEDYFAAKSLLSRGWKSAIS 289 (431)
T ss_pred eeeccCCc-eEEEccccccccc--cccHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 00000000 0000011111111 223346899999999998743 3333378888888888889876554
No 70
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=99.04 E-value=3.2e-09 Score=91.04 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=114.7
Q ss_pred CCceEEEEEecCCC--hhHHHHHHH--HHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC--c-
Q psy11642 81 LPKASVILVFHNEG--FSSLMRTVH--SIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--E- 153 (372)
Q Consensus 81 ~p~vSVIIp~yn~~--~~~l~~~l~--Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n--~- 153 (372)
+|..++|||+--.. ...-.|.+. ++++--.+....+||++++.+.-+ ..++.+....+ ++-++..... .
T Consensus 1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d---~~i~~~i~~~~-~~~yl~~~s~~~F~ 76 (346)
T COG4092 1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD---RLIRSYIDPMP-RVLYLDFGSPEPFA 76 (346)
T ss_pred CCCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH---HHHHHHhcccc-ceEEEecCCCcccc
Confidence 46788999985432 012223333 322222234456999998876433 37777877654 6666654322 2
Q ss_pred chHHHHHhhhhhcc----CcEEEEecCCcccCCCChHHHHHhh-----hcCC-CEEEeeeeecccCCcceeeeccCCCCc
Q psy11642 154 GLIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPI-----YSDR-KIMTVPVIDGIDYQTWEFRSVYEPDHH 223 (372)
Q Consensus 154 G~~~a~n~g~~~a~----gd~i~flD~D~~~~~~~L~~ll~~~-----~~~~-~~~v~p~i~~~~~~~~~~~~~~~~~~~ 223 (372)
.-+..+|.|+.++- .++|+|||.||..+.+-.++++..+ ..+= +..+.|+...-...+ ...
T Consensus 77 s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~---------~v~ 147 (346)
T COG4092 77 SETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADT---------QVF 147 (346)
T ss_pred chhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhh---------hHH
Confidence 23678899998875 8999999999999977777776433 2222 334556542110000 000
Q ss_pred c-ccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHc
Q psy11642 224 Y-RGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMC 298 (372)
Q Consensus 224 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~ 298 (372)
+ .....|+... .............+-.+ ...+.++|.|..|-..||+||.+.++|+||.||..|+...
T Consensus 148 f~~~d~f~d~~i------~es~~~~~~~~~~ff~~-~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~ 216 (346)
T COG4092 148 FDVEDMFLDAMI------FESPLAEFRKEDNFFIA-PYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLY 216 (346)
T ss_pred HHHHHHhhhhHh------hhhHHHHhCcccccccc-cccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHH
Confidence 0 0001111111 11111111111222222 2346789999999999999999999999999999998664
No 71
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=98.99 E-value=3.8e-08 Score=96.23 Aligned_cols=214 Identities=14% Similarity=0.205 Sum_probs=141.2
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccC-CcCCccEEEEEeCCC-Cch----hhHHHHHHHHHHcC-CcEEEEecC-C
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRT-PAQYLEEIILVDDFS-SKA----DLDQKLEDYIQRFN-GKVRLIRNT-E 151 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt-~~~~~~eIIvVDd~S-~d~----t~~~~l~~~~~~~~-~~v~~i~~~-~ 151 (372)
+..+|.||||..++..+.+.+.|+...+.. -++....++||-.++ .+. .+.+.++++.++++ .++.++... +
T Consensus 245 ~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~ 324 (499)
T PF05679_consen 245 ESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTG 324 (499)
T ss_pred CCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCC
Confidence 347899999999993288888887765432 112233566665554 222 12336677777663 478888877 8
Q ss_pred CcchHHHHHhhhhhcc-CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeee-cccCCcceeeeccCCCCccccccc
Q psy11642 152 REGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID-GIDYQTWEFRSVYEPDHHYRGIFE 229 (372)
Q Consensus 152 n~G~~~a~n~g~~~a~-gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 229 (372)
+...+.|...|++... .++++|+|.|..+++++|.++-.-...+. -+-.|++- .++... .|... ......+.
T Consensus 325 ~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~-qvy~PI~Fs~y~p~~-~~~~~----~~~~~~~~ 398 (499)
T PF05679_consen 325 EFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGK-QVYFPIVFSQYNPDI-VYAGK----PPEPDQFD 398 (499)
T ss_pred CccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcCc-EEEEeeeccccCCcc-cccCC----CCccccCc
Confidence 8889999999998664 67999999999999999999877654443 33346542 222221 00000 00000000
Q ss_pred cccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHh--cCCCCCCcccchhhHHHHHHHHHcC--CeEEEE
Q psy11642 230 WGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL--GGYDPGLLVWGGENFELSFKIWMCG--GSIEWV 305 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~i--Ggfd~~~~~~g~ED~dl~~r~~~~G--~~i~~~ 305 (372)
.. ....-++. ..-+.+++-++.|..+ |||+.....||+||+||.-++.+.| ..+.-.
T Consensus 399 i~-----------------~~~G~w~~--~gfg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra 459 (499)
T PF05679_consen 399 IS-----------------KDTGFWRR--FGFGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRA 459 (499)
T ss_pred cC-----------------CCCCcccc--CCCceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEc
Confidence 00 00000111 1124567888889999 8999999999999999999999999 899999
Q ss_pred cccEEEEeccCCC
Q psy11642 306 PCSRIGHVYRSFM 318 (372)
Q Consensus 306 p~~~v~H~~~~~~ 318 (372)
++.-+.|.|+...
T Consensus 460 ~ep~L~h~yh~~~ 472 (499)
T PF05679_consen 460 VEPGLVHRYHPKH 472 (499)
T ss_pred cCCCeEEEecccC
Confidence 9999999987543
No 72
>KOG3916|consensus
Probab=98.83 E-value=6.9e-08 Score=86.06 Aligned_cols=159 Identities=21% Similarity=0.351 Sum_probs=101.4
Q ss_pred CCccccccccCCCCCCceEEEEEecCCChhHHHHHHHH---HHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCc
Q psy11642 67 LRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHS---IIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGK 143 (372)
Q Consensus 67 ~r~~~~~~~~~~~~~p~vSVIIp~yn~~~~~l~~~l~S---l~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~ 143 (372)
.+++.|.. .-+|.||||.+|++ +.|...|.- ++++..-.+ -|+||+...++
T Consensus 142 ~~P~dC~a------r~kvAIIIPfR~Re-~HL~~~l~~LhP~LqrQrL~y--~iyVieQ~g~~----------------- 195 (372)
T KOG3916|consen 142 YRPEDCQA------RHKVAIIIPFRNRE-EHLRYLLHHLHPFLQRQRLDY--RIYVIEQAGNK----------------- 195 (372)
T ss_pred cCCCCCCc------cceeEEEeecccHH-HHHHHHHHHhhHHHHhhhhce--eEEEEEecCCC-----------------
Confidence 45555543 34799999999998 777766654 444433333 67777654332
Q ss_pred EEEEecCCCcchHHHHHhhhhhcc----CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccC
Q psy11642 144 VRLIRNTEREGLIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYE 219 (372)
Q Consensus 144 v~~i~~~~n~G~~~a~n~g~~~a~----gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~ 219 (372)
-++.+.-.|.|...|. -|-++|-|.|..+..|- ....||.- . .....
T Consensus 196 --------~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenDr------------NlY~C~~~------P-RH~sv-- 246 (372)
T KOG3916|consen 196 --------PFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDR------------NLYGCPEQ------P-RHMSV-- 246 (372)
T ss_pred --------cccHHHhhhhHHHHHHHhcCCCEEEEecccccccCCC------------CccCCCCC------C-cchhh--
Confidence 2445667788887774 57889999997764431 11112100 0 00000
Q ss_pred CCCccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcC
Q psy11642 220 PDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCG 299 (372)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G 299 (372)
....|.+.+. ....-||..++.++-|.+|.||...|..|||||-||+-|+..+|
T Consensus 247 ----a~dk~gy~LP----------------------Y~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag 300 (372)
T KOG3916|consen 247 ----ALDKFGYRLP----------------------YKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAG 300 (372)
T ss_pred ----hhhhcccccc----------------------chhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcC
Confidence 0011111111 12345788899999999999999999999999999999999999
Q ss_pred CeEEEEc
Q psy11642 300 GSIEWVP 306 (372)
Q Consensus 300 ~~i~~~p 306 (372)
++|..-|
T Consensus 301 ~~IsRp~ 307 (372)
T KOG3916|consen 301 MKISRPP 307 (372)
T ss_pred ceeecCC
Confidence 9986544
No 73
>PLN02893 Cellulose synthase-like protein
Probab=98.73 E-value=5.9e-07 Score=89.50 Aligned_cols=52 Identities=21% Similarity=0.133 Sum_probs=44.7
Q ss_pred CCCCceEEEEEe---cCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhH
Q psy11642 79 LDLPKASVILVF---HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD 130 (372)
Q Consensus 79 ~~~p~vSVIIp~---yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~ 130 (372)
.++|.|.|.|+| ++|+.-...+|+-|+++-.||..+.-+.|-|||.+.=|..
T Consensus 98 ~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~ 152 (734)
T PLN02893 98 SDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLF 152 (734)
T ss_pred ccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHH
Confidence 569999999999 7777678899999999999998888999999998755444
No 74
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.67 E-value=6.4e-07 Score=86.81 Aligned_cols=212 Identities=16% Similarity=0.152 Sum_probs=121.6
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCC-----CCchhhHHHHHHHHHH-----------------
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDF-----SSKADLDQKLEDYIQR----------------- 139 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~-----S~d~t~~~~l~~~~~~----------------- 139 (372)
+.+-.+||+|||..+.|+++|+||..++|++...-|+||.|| ..+.++.+++-+....
T Consensus 25 ~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (527)
T PF03142_consen 25 KFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSLG 104 (527)
T ss_pred ceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEec
Confidence 345568999999989999999999999999877788888887 2222222244333320
Q ss_pred -----c------------C-------------CcEEEEe----------cCCCcchHHHHHh------------------
Q psy11642 140 -----F------------N-------------GKVRLIR----------NTEREGLIRTRSR------------------ 161 (372)
Q Consensus 140 -----~------------~-------------~~v~~i~----------~~~n~G~~~a~n~------------------ 161 (372)
+ . +-+.++. .+.|.|+-...-.
T Consensus 105 ~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~~ 184 (527)
T PF03142_consen 105 EGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPLE 184 (527)
T ss_pred cCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchHH
Confidence 0 0 0122222 2556664322111
Q ss_pred -----------hhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEE-EeeeeecccCCcceeeeccCCCCccccccc
Q psy11642 162 -----------GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGIDYQTWEFRSVYEPDHHYRGIFE 229 (372)
Q Consensus 162 -----------g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~-v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (372)
|+.....|||+.+|+|+.+.|+.+..|+..+.+++..+ +|+.... +... -+
T Consensus 185 ~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i-~n~~----------------~s 247 (527)
T PF03142_consen 185 LELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRI-DNKG----------------QS 247 (527)
T ss_pred HHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEE-cCCC----------------CC
Confidence 11212369999999999999999999999998877754 4453221 1110 01
Q ss_pred cccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHH--------------hcCCCC---------CCcccch
Q psy11642 230 WGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLE--------------LGGYDP---------GLLVWGG 286 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~--------------iGgfd~---------~~~~~g~ 286 (372)
|-..+............+..+...-.+...+||+.++|-+.... +..|.+ .+.. -|
T Consensus 248 ~~t~~Q~fEY~ish~l~Ka~Es~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~-lG 326 (527)
T PF03142_consen 248 WWTMYQVFEYAISHHLQKAFESVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLD-LG 326 (527)
T ss_pred HhhheeccchhHHHHHHHHHHHHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhh-cc
Confidence 11111111111111111111111112345567777777666543 112211 1111 28
Q ss_pred hhHHHHHHHHHc--CCeEEEEcccEEE
Q psy11642 287 ENFELSFKIWMC--GGSIEWVPCSRIG 311 (372)
Q Consensus 287 ED~dl~~r~~~~--G~~i~~~p~~~v~ 311 (372)
||-.||.-+.+. ++++.++|.+...
T Consensus 327 EDR~LttLlLk~~~~~k~~y~~~A~a~ 353 (527)
T PF03142_consen 327 EDRWLTTLLLKQFPGYKTEYVPSAVAY 353 (527)
T ss_pred hhHHHHHHHHhhCCCceEEEccccccc
Confidence 999999888776 8899999998776
No 75
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=98.65 E-value=1.1e-06 Score=81.18 Aligned_cols=225 Identities=19% Similarity=0.169 Sum_probs=134.7
Q ss_pred eEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhH-----------------HHHHHHHHH-------
Q psy11642 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD-----------------QKLEDYIQR------- 139 (372)
Q Consensus 84 vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~-----------------~~l~~~~~~------- 139 (372)
|=|.|++|-.. .+..||.+++++...+...-|-||+....++... +....+...
T Consensus 2 IFvsiasyRD~--~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 79 (343)
T PF11397_consen 2 IFVSIASYRDP--ECAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWP 79 (343)
T ss_pred EEEEEeeecCc--hHHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhcccccccc
Confidence 55778888765 5899999999886444445666676543332220 001111111
Q ss_pred ------cCCcEEEEecC--CCcchHHHHHhhhhhcc-CcEEEEecCCcccCCCChHHHHHhhhc--CCCEEEeeeeeccc
Q psy11642 140 ------FNGKVRLIRNT--EREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYS--DRKIMTVPVIDGID 208 (372)
Q Consensus 140 ------~~~~v~~i~~~--~n~G~~~a~n~g~~~a~-gd~i~flD~D~~~~~~~L~~ll~~~~~--~~~~~v~p~i~~~~ 208 (372)
...+|++++.+ +-.|...||+.+.+.-+ -+|++.+|+++.+.++|=+.|++.+.. ++..++...-..++
T Consensus 80 ~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~ 159 (343)
T PF11397_consen 80 DGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYE 159 (343)
T ss_pred cccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCcc
Confidence 12467777654 34889999999998777 479999999999999999999998876 34444441111111
Q ss_pred C--CcceeeeccCCCCccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCC--ccc
Q psy11642 209 Y--QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGL--LVW 284 (372)
Q Consensus 209 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~--~~~ 284 (372)
. ......... ........|.-.... .+.............|...+..++|+++-+-++..++. ||+.+ .+.
T Consensus 160 ~~~~~~~~~~~~-~~~lc~~~~~~~g~~---~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eVP-~DP~lp~lF~ 234 (343)
T PF11397_consen 160 PDGGQPEPEKTT-VPRLCAARFGPDGMV---RLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREVP-YDPHLPFLFD 234 (343)
T ss_pred cccCCccccCCc-ccEEEEeEECCCCcE---eecceecccccccCCCeeeceecccEEEcchhheecCC-CCCCcccccc
Confidence 1 000000000 000001111100000 00000011111223466677777777766777667766 99887 554
Q ss_pred chhhHHHHHHHHHcCCeEEEEcccEEEEeccC
Q psy11642 285 GGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316 (372)
Q Consensus 285 g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~ 316 (372)
||++-++.|+|-+||.+..=+...++|.|..
T Consensus 235 -GEE~~~aaRlwT~GYD~Y~P~~~v~~H~Y~r 265 (343)
T PF11397_consen 235 -GEEISMAARLWTHGYDFYSPTRNVLFHLYSR 265 (343)
T ss_pred -cHHHHHHHHHHHcCCccccCCCceeEEEccC
Confidence 8999999999999999988888999999884
No 76
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=98.63 E-value=2.2e-07 Score=87.35 Aligned_cols=194 Identities=16% Similarity=0.164 Sum_probs=101.3
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC--------
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-------- 150 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~-------- 150 (372)
...+.+-|+|.++|++ ++|.+||+||++..+....+.|||-.||+..++.+ +++.+.. .+++++..
T Consensus 90 ~~~~~~pVlV~AcNRp-~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~-vi~~y~~----~v~~i~~~~~~~i~~~ 163 (434)
T PF03071_consen 90 NKEPVIPVLVFACNRP-DYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAE-VIKSYGD----QVTYIQHPDFSPITIP 163 (434)
T ss_dssp -------EEEEESS-T-T-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHH-HHHGGGG----GSEEEE-S--S-----
T ss_pred cCCCcceEEEEecCCc-HHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHH-HHHHhhh----hheeeecCCcCCceeC
Confidence 4457789999999999 99999999999876544445899999998876655 6666632 34444321
Q ss_pred -CC------cchHHHHHhhhhh----ccCcEEEEecCCcccCCCChHHHHH---hhhcCCCEEEeeeeecccCCcceeee
Q psy11642 151 -ER------EGLIRTRSRGAKE----SRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRKIMTVPVIDGIDYQTWEFRS 216 (372)
Q Consensus 151 -~n------~G~~~a~n~g~~~----a~gd~i~flD~D~~~~~~~L~~ll~---~~~~~~~~~v~p~i~~~~~~~~~~~~ 216 (372)
.. .+++.-.-.|+.+ -..+.++++.+|.++.||+++-+.+ .+.+++....+... +.+
T Consensus 164 ~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSaw---Ndn------ 234 (434)
T PF03071_consen 164 PKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAW---NDN------ 234 (434)
T ss_dssp TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES-----TT------
T ss_pred cccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEcc---ccC------
Confidence 11 1123322233332 3478999999999999999876554 45566665443221 110
Q ss_pred ccCCCCccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhc-CCCCCCcccchhhHHHHHHH
Q psy11642 217 VYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGGENFELSFKI 295 (372)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iG-gfd~~~~~~g~ED~dl~~r~ 295 (372)
+..+.. ........+++..++|=..|++|+.|+++. .|... -+|-++|.
T Consensus 235 ------G~~~~~-----------------~~~~~~~lyRsdffpglGWml~r~~w~el~~~Wp~~-------~WDdwmR~ 284 (434)
T PF03071_consen 235 ------GKEHFV-----------------DDSRPSLLYRSDFFPGLGWMLTRELWDELEPKWPKA-------FWDDWMRQ 284 (434)
T ss_dssp -------BGGGS------------------TT-TT-EEEESS---SSEEEEHHHHHHHGGG--SS--------HHHHHTS
T ss_pred ------Cccccc-----------------cCCCccceEecccCCchHHHhhHHHHHhhcccCCCC-------CchhhhcC
Confidence 000000 001123456777888888999999999987 34432 35666664
Q ss_pred H-HcCCeEEEEcc-cEEEEeccCC
Q psy11642 296 W-MCGGSIEWVPC-SRIGHVYRSF 317 (372)
Q Consensus 296 ~-~~G~~i~~~p~-~~v~H~~~~~ 317 (372)
- +..++-...|+ ++.+|..+..
T Consensus 285 ~~~rkgR~cIrPeisRt~~fg~~G 308 (434)
T PF03071_consen 285 PEQRKGRQCIRPEISRTYHFGKKG 308 (434)
T ss_dssp HHHHTT-EEEEESSBSEEE--SSS
T ss_pred ccccCCCceeeccCCCccccCcCC
Confidence 3 33446666776 5688876543
No 77
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=98.01 E-value=4.4e-05 Score=57.54 Aligned_cols=83 Identities=19% Similarity=0.091 Sum_probs=57.8
Q ss_pred cCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcc----hHHHHHhhhhh-
Q psy11642 91 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG----LIRTRSRGAKE- 165 (372)
Q Consensus 91 yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G----~~~a~n~g~~~- 165 (372)
+|++ ..|...|...++.... .++|+||||+|+|.+ +++++ + .+.++....... ....++..++.
T Consensus 1 rne~-~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t~~-~l~~~----~-~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 69 (97)
T PF13704_consen 1 RNEA-DYLPEWLAHHLALGVD----HIYIYDDGSTDGTRE-ILRAL----P-GVGIIRWVDPYRDERRQRAWRNALIERA 69 (97)
T ss_pred CChH-HHHHHHHHHHHHcCCC----EEEEEECCCCccHHH-HHHhC----C-CcEEEEeCCCccchHHHHHHHHHHHHhC
Confidence 5888 8999999988766432 799999999999987 66665 2 466665543322 12344444444
Q ss_pred ccCcEEEEecCCcccCCCC
Q psy11642 166 SRGEVIVFLDAHCEVGLNW 184 (372)
Q Consensus 166 a~gd~i~flD~D~~~~~~~ 184 (372)
..++|++++|+|-.+.+..
T Consensus 70 ~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 70 FDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCCEEEEEeeeEEEecCC
Confidence 3689999999999775543
No 78
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.92 E-value=0.00014 Score=64.46 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=85.5
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEE-EEEeCCCC-chhhHHHHHHHHHHcC---------CcEEEE
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEI-ILVDDFSS-KADLDQKLEDYIQRFN---------GKVRLI 147 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eI-IvVDd~S~-d~t~~~~l~~~~~~~~---------~~v~~i 147 (372)
.+.++|=|++|..|.+ +++.+.+..|.+.+||...+.+ ++|.|.++ |.+.+ .+++..++.. ..|.++
T Consensus 22 ~~~e~VLILtplrna~-~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~-~l~~~~~~~q~~~~~~~~F~~itIl 99 (269)
T PF03452_consen 22 RNKESVLILTPLRNAA-SFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLK-ILEAALKKLQSHGPESKRFRSITIL 99 (269)
T ss_pred ccCCeEEEEEecCCch-HHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHH-HHHHHHHHHhccCcccCCcceEEEE
Confidence 4568899999999988 9999999999999999887788 44555443 45544 6665543321 257777
Q ss_pred ecCCC--------------------cchHHHHHhhhhhcc---CcEEEEecCCcccC-CCChHHHHHhhhcCCCEEEeee
Q psy11642 148 RNTER--------------------EGLIRTRSRGAKESR---GEVIVFLDAHCEVG-LNWLPPLLAPIYSDRKIMTVPV 203 (372)
Q Consensus 148 ~~~~n--------------------~G~~~a~n~g~~~a~---gd~i~flD~D~~~~-~~~L~~ll~~~~~~~~~~v~p~ 203 (372)
+.+-. .-+++|||..+..|- .+||+++|+|++-. |+.|+.|+ .....+++|.
T Consensus 100 ~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli----~~~kdIivPn 175 (269)
T PF03452_consen 100 RKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLI----AHDKDIIVPN 175 (269)
T ss_pred cCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHH----hCCCCEEccc
Confidence 64321 115778888887764 58999999999754 46666665 4566777776
Q ss_pred ee
Q psy11642 204 ID 205 (372)
Q Consensus 204 i~ 205 (372)
+.
T Consensus 176 ~~ 177 (269)
T PF03452_consen 176 CW 177 (269)
T ss_pred ee
Confidence 54
No 79
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=0.00078 Score=64.13 Aligned_cols=206 Identities=15% Similarity=0.127 Sum_probs=108.7
Q ss_pred CceEEEEEecCCChh----HHHHHHHHHHccCCcCCccEEEEEeCCCCchhhH---HHHHHHHHHcCC--cEEEEecCCC
Q psy11642 82 PKASVILVFHNEGFS----SLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD---QKLEDYIQRFNG--KVRLIRNTER 152 (372)
Q Consensus 82 p~vSVIIp~yn~~~~----~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~---~~l~~~~~~~~~--~v~~i~~~~n 152 (372)
-+..|++|+|||... -|+.+-+|+.+.... ..+.+.|+-|.-+.+..- +...+++++... +|-+-+..+|
T Consensus 144 hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~-~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~n 222 (736)
T COG2943 144 HRTAILMPIYNEDVNRVFAGLRATYESLAATGHA-EHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRRRRN 222 (736)
T ss_pred cceeEEeeccccCHHHHHHHHHHHHHHHHhhCCc-ccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehHhhh
Confidence 458999999999743 355666777654322 234888887754433211 112234445442 4444444444
Q ss_pred cc-hHHHHHhhhhh--ccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe---eeeecccCCcceeeeccCCCCcccc
Q psy11642 153 EG-LIRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV---PVIDGIDYQTWEFRSVYEPDHHYRG 226 (372)
Q Consensus 153 ~G-~~~a~n~g~~~--a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~---p~i~~~~~~~~~~~~~~~~~~~~~~ 226 (372)
.| ++++..-=.+. ...++.++||+|..++.+++-.+++.++.+|..++. |.+ +++++.--..+.-....+-.
T Consensus 223 ~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~--~gg~TL~AR~qQFatrvYGp 300 (736)
T COG2943 223 VKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKA--SGGDTLYARCQQFATRVYGP 300 (736)
T ss_pred hcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhh--cCcchHHHHHHHHHHHHhch
Confidence 33 22211111111 137899999999999999999999999999987655 332 12222111000000000000
Q ss_pred ccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCC--CCcccchh----hHHHHHHHHHcCC
Q psy11642 227 IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDP--GLLVWGGE----NFELSFKIWMCGG 300 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~--~~~~~g~E----D~dl~~r~~~~G~ 300 (372)
.+.-.+.| .. ..-....|.+..||.+.|.+.-|..+ +-...||+ |+-=+--+.+.||
T Consensus 301 l~~~GLaw---------W~--------~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEAALmRRaGW 363 (736)
T COG2943 301 LFTAGLAW---------WQ--------LGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGW 363 (736)
T ss_pred HHhhhhHH---------Hh--------ccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHHHHHhhcCc
Confidence 00000000 00 01223468888999999988766543 22222232 3333344566899
Q ss_pred eEEEEcc
Q psy11642 301 SIEWVPC 307 (372)
Q Consensus 301 ~i~~~p~ 307 (372)
.+...|+
T Consensus 364 ~v~ia~d 370 (736)
T COG2943 364 GVWIAYD 370 (736)
T ss_pred eEEEecc
Confidence 8887764
No 80
>PLN02189 cellulose synthase
Probab=97.57 E-value=0.0032 Score=65.27 Aligned_cols=52 Identities=17% Similarity=0.018 Sum_probs=42.9
Q ss_pred CCCCceEEEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhH
Q psy11642 79 LDLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD 130 (372)
Q Consensus 79 ~~~p~vSVIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~ 130 (372)
..+|.|.|.|+|-+ |+.-...+|+-||++-.||....-+.|-|||.+.=|.+
T Consensus 328 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~ 382 (1040)
T PLN02189 328 NMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFE 382 (1040)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHH
Confidence 45999999999955 44457889999999999998888999999998755544
No 81
>PLN02195 cellulose synthase A
Probab=97.53 E-value=0.002 Score=66.25 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=43.0
Q ss_pred CCCCceEEEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhH
Q psy11642 79 LDLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD 130 (372)
Q Consensus 79 ~~~p~vSVIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~ 130 (372)
.++|.|.|.|+|-+ |+.-...+|+-||++-.||....-+.|-|||.+.=|..
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~ 303 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFE 303 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHH
Confidence 56999999999965 44457889999999999998888999999997754444
No 82
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=97.30 E-value=0.0011 Score=61.19 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=92.6
Q ss_pred cchHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhc----CCCEEEeeeeecccCCcceeeeccCCCCcccc--
Q psy11642 153 EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS----DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRG-- 226 (372)
Q Consensus 153 ~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~----~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~-- 226 (372)
.-....||.|+..|+.++++++|.|..++++.-+.+.+.+.. .....|+|.+.......+.-...........|
T Consensus 113 YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~~~~~P~~K~eL~~~~~~~~~ 192 (317)
T PF13896_consen 113 YPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETREGADIPRTKKELLELLKNGKA 192 (317)
T ss_pred CChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecccCcCCCCCHHHHHHHHHhCch
Confidence 557789999999999999999999999999988888776654 33456668776544322111000000000000
Q ss_pred -ccccccccccCCCcHHHHhhcc----CCCCcccCccccc--cchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcC
Q psy11642 227 -IFEWGMLYKENELPEREAKKRK----YNSEPYKSPTHAG--GLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCG 299 (372)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~G--~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G 299 (372)
.|.-.........+....-... ....++.+....+ -.++.+| ..-.|||.|..+|..-.-....+..+|
T Consensus 193 ~~Fh~~~~~~~h~~t~~~~W~~~~~~~~~~~~y~v~~~~~~EP~~I~~~----~~P~yDErF~~yg~nk~s~~~eL~~~g 268 (317)
T PF13896_consen 193 RPFHHKVCPQGHGPTNYDRWFSAPESDELDVPYEVKYEDGWEPYYIGRR----NVPLYDERFRGYGFNKISQIYELCAAG 268 (317)
T ss_pred hhccccccccCcCCccHHHHhccCCcCCCcceEEEccCCCccCEEEccC----CCCCCcccccccccchHHHHHHHHHcC
Confidence 0100000000111111110000 0111222211111 1233343 567899999999888888999999999
Q ss_pred CeEEEEcccEEEEeccC
Q psy11642 300 GSIEWVPCSRIGHVYRS 316 (372)
Q Consensus 300 ~~i~~~p~~~v~H~~~~ 316 (372)
++...+|.+.+.|....
T Consensus 269 y~F~VL~~aFlVH~~h~ 285 (317)
T PF13896_consen 269 YRFHVLPNAFLVHRPHK 285 (317)
T ss_pred CEEEEcCCeeEEecCCC
Confidence 99999999999998543
No 83
>KOG3917|consensus
Probab=97.24 E-value=0.00083 Score=56.78 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=94.5
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHH----ccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcc
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSII----KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG 154 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~----~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G 154 (372)
.+.-+..|++|++++- +.|...+-.+. +|.. .+.|+|++.- | ++ +++
T Consensus 71 aS~HklavlVPfRdRf-EELl~FvPHM~~FL~rq~v---~HHI~vlNQv--D----------------~f-------RFN 121 (310)
T KOG3917|consen 71 ASYHKLAVLVPFRDRF-EELLEFVPHMSKFLHRQNV---SHHILVLNQV--D----------------PF-------RFN 121 (310)
T ss_pred ccceeEEEEechHHHH-HHHHHhhHHHHHHHhhcCc---ceEEEEeecc--C----------------cc-------eec
Confidence 3456789999999987 77777765432 3333 2367766531 1 11 233
Q ss_pred hHHHHHhhhhhcc--CcEEEEecCCcccC-CCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccc
Q psy11642 155 LIRTRSRGAKESR--GEVIVFLDAHCEVG-LNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWG 231 (372)
Q Consensus 155 ~~~a~n~g~~~a~--gd~i~flD~D~~~~-~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
.+.-.|.|...|+ .|||+.-|.|...- ++..-..=. ...+..++.|.+
T Consensus 122 RAsLINVGf~eas~~~DYiaMhDVDLLPlN~el~Y~fP~--~~gp~HiasP~l--------------------------- 172 (310)
T KOG3917|consen 122 RASLINVGFNEASRLCDYIAMHDVDLLPLNPELPYDFPG--IGGPRHIASPQL--------------------------- 172 (310)
T ss_pred hhhheecchhhhcchhceeeecccccccCCCCCCCCCCc--cCCcccccCccc---------------------------
Confidence 4556677777775 89999999997642 221100000 000000111100
Q ss_pred cccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEE
Q psy11642 232 MLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEW 304 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~ 304 (372)
...|......||.++++++-|..+.|+...|-.||-||-||.+|+..+|..+..
T Consensus 173 -------------------HPkYHY~~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltR 226 (310)
T KOG3917|consen 173 -------------------HPKYHYEKFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTR 226 (310)
T ss_pred -------------------CchhhhhhhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEec
Confidence 000112345789999999999999999999999999999999999999987654
No 84
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.21 E-value=0.011 Score=53.74 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=65.1
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCch------hhHHHHHHHHHHcCCcEEEEecCC----
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKA------DLDQKLEDYIQRFNGKVRLIRNTE---- 151 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~------t~~~~l~~~~~~~~~~v~~i~~~~---- 151 (372)
-...||||+.||....|.-.|.+| +-.- -||||-|.+-.+ ..+ .++.+..-....+-++++..
T Consensus 50 ~~maIVVP~KdE~l~lleGVL~gI----Ph~c--~iIvVSNS~r~~~d~f~~E~d-~~~~f~~~t~r~~i~vHQkDp~la 122 (381)
T TIGR02460 50 GKTAIVVPVKNEKLHLLEGVLSGI----PHEC--PIIIVSNSKREPPDRFKMEVD-LIRHFSNLTHRKIIIIHQKDPALA 122 (381)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcC----CCCC--eEEEEeCCCCCChhHHHHHHH-HHHHHHHhhcCceEEEEcCCHHHH
Confidence 458999999999954444444443 3322 688888765422 122 45556554334566666521
Q ss_pred ------------------CcchHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhc
Q psy11642 152 ------------------REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYS 194 (372)
Q Consensus 152 ------------------n~G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~ 194 (372)
+.|++.+.-.|+..|+ .+||-|+|+|..+ |+...+-+..+..
T Consensus 123 ~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyi-PGaV~EYvk~yAa 185 (381)
T TIGR02460 123 EAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYF-PGAVNEYVKIYAA 185 (381)
T ss_pred HHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCC-CchHHHHHHHHHh
Confidence 2456666666666554 6999999999988 5566655555443
No 85
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.09 E-value=0.0033 Score=57.33 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=57.4
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCC---chhh--HHHHHHHHHHcCCcEEEEecCC-----
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADL--DQKLEDYIQRFNGKVRLIRNTE----- 151 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~---d~t~--~~~l~~~~~~~~~~v~~i~~~~----- 151 (372)
-..+||||+.||....|.-.|.+| +-.- -||||-|.+. |... .+.++.+.......+-++++..
T Consensus 50 ~~maIVVP~KnE~l~lleGVL~gI----Ph~C--~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~ 123 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLKLLEGVLSGI----PHDC--LIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAE 123 (381)
T ss_dssp TTEEEEEEESS--HHHHHHHHHCS-----TTS--EEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHH
T ss_pred hCcEEEEECCCCchhhhhhhhhcC----CCCC--eEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHH
Confidence 458999999999954444444444 3332 7888888777 3321 1266777765445677777632
Q ss_pred -----------------CcchHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHh
Q psy11642 152 -----------------REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 152 -----------------n~G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~ 191 (372)
+.|++.+.-.|+..|+ .+||-|+|+|..+ |+.+.+-+..
T Consensus 124 Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyi-PGaV~EYvk~ 182 (381)
T PF09488_consen 124 AFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYI-PGAVNEYVKD 182 (381)
T ss_dssp HHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS--HHHHHHHHHH
T ss_pred HHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCC-cchHHHHHHH
Confidence 3567777777776664 6999999999877 4444444443
No 86
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=96.91 E-value=0.028 Score=49.55 Aligned_cols=200 Identities=15% Similarity=0.137 Sum_probs=106.8
Q ss_pred EEEEecCCChhHHHHHHH-HHHccC--CcCCccEEEEEeCCCCchhhHHHHHHHHH---HcCCcEEEEecCCC-------
Q psy11642 86 VILVFHNEGFSSLMRTVH-SIIKRT--PAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTER------- 152 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~-Sl~~qt--~~~~~~eIIvVDd~S~d~t~~~~l~~~~~---~~~~~v~~i~~~~n------- 152 (372)
|..-.||.+ +.|..... +|++.. ..+...-|-|+++||+|.|.+ .|+.+.. ..+.+-.+...+..
T Consensus 4 IA~~l~~~~-~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~-~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~ 81 (241)
T PF11735_consen 4 IAANLYNNE-DILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKE-ALRALDAELDALGVPHSIVLSDITHRDEIER 81 (241)
T ss_pred EEEEcccCH-hHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHH-HHHHHHHHHHhCCCCeEEEeCCCcccccccc
Confidence 444567766 66665555 554321 222334788999999999987 8888874 33333344332111
Q ss_pred -------cchHHHHHhhhhhc---------cCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCC----cc
Q psy11642 153 -------EGLIRTRSRGAKES---------RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ----TW 212 (372)
Q Consensus 153 -------~G~~~a~n~g~~~a---------~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~----~~ 212 (372)
.-++..||.+++-- ..+-|+||| |+.+.+.-+-+|+..-......++|. ++..... +|
T Consensus 82 ~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCa-mDf~~~~~fYD~w 159 (241)
T PF11735_consen 82 PPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMACA-MDFINPPKFYDTW 159 (241)
T ss_pred cchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchhh-cccccCcccccee
Confidence 11478899998632 246799999 77777655555555434334444443 3332222 22
Q ss_pred eeeeccCCCCcc-ccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhc--CCCCC--Ccccchh
Q psy11642 213 EFRSVYEPDHHY-RGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG--GYDPG--LLVWGGE 287 (372)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iG--gfd~~--~~~~g~E 287 (372)
......| ..+ ...+.| . .............|+++-.+.+|..+++.+.|..-+ .|..+ ....++|
T Consensus 160 v~RD~~G--~~~~~~~~p~------f--~~~~~~~~~~~~~pv~V~SCWnG~va~~a~pf~~~~~lrFR~~~~~~~~~sE 229 (241)
T PF11735_consen 160 VLRDIEG--DSFGSPFWPY------F--RSASSRDRLRRGDPVPVFSCWNGMVAFDAEPFLPPTPLRFRADSEGECEASE 229 (241)
T ss_pred EEecCCC--CccccccCcC------c--CCHHHHHHHhcCCCeeeecccCCcccccchhhccCCceeecCCCCCceeccc
Confidence 2222211 111 111111 0 111222233346677787888999999999998765 34331 1111244
Q ss_pred hHHHHHHHHHcC
Q psy11642 288 NFELSFKIWMCG 299 (372)
Q Consensus 288 D~dl~~r~~~~G 299 (372)
-.=++.-+|..|
T Consensus 230 c~Li~~D~~~~g 241 (241)
T PF11735_consen 230 CCLIHADLWRWG 241 (241)
T ss_pred hhHhHhhhhhcC
Confidence 444555555443
No 87
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.90 E-value=0.0071 Score=53.17 Aligned_cols=90 Identities=11% Similarity=0.166 Sum_probs=62.9
Q ss_pred HHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc---cCcEE--EEe
Q psy11642 100 RTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVI--VFL 174 (372)
Q Consensus 100 ~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a---~gd~i--~fl 174 (372)
-||.||..||.+++ .++|+-+....+...+.|+++.+.++ +++++..+... ...+....++.+ .++++ +-|
T Consensus 46 ~~LpSl~~QTd~dF--~~lv~~~~~~P~~~~~rL~~l~~~~p-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~RL 121 (234)
T PF11316_consen 46 YCLPSLRAQTDQDF--TWLVLFDDDLPEPYRERLRDLLADYP-QFRIVFRPPGP-HRDAMRRAINAARRDGADPVLQFRL 121 (234)
T ss_pred HHhhHHHhccCCCe--EEEEEECCCCCHHHHHHHHHHhccCC-CcEEEecCCch-HHHHHHHHHhhhccCCCCEEEEEEE
Confidence 47899999999987 77775555554555558888888776 56666554332 444555554222 34544 456
Q ss_pred cCCcccCCCChHHHHHhhh
Q psy11642 175 DAHCEVGLNWLPPLLAPIY 193 (372)
Q Consensus 175 D~D~~~~~~~L~~ll~~~~ 193 (372)
|+|+.+..++++.+-..+.
T Consensus 122 DdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 122 DDDDALHRDFVARLRRAAA 140 (234)
T ss_pred CCcchhhHHHHHHHHHHHH
Confidence 9999999999999999874
No 88
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=96.88 E-value=0.0085 Score=53.79 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=82.9
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC----CC-----c
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT----ER-----E 153 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~----~n-----~ 153 (372)
..|-.|-+.||+ .+|..+|+|++..- .|.|+.=|.|+|+|.+ ++.++++++|..+.+.... +| -
T Consensus 88 ~~~~~iRvKnE~-~tl~~si~S~Lpai-----~~gVI~yNdc~D~t~E-iil~fckkyP~fip~~Ypy~v~~~n~~~~~n 160 (347)
T PF06306_consen 88 NPWAFIRVKNEA-MTLAESIESILPAI-----DEGVIGYNDCTDGTEE-IILEFCKKYPSFIPIKYPYEVIIKNPKSEEN 160 (347)
T ss_pred CcceEEEEcchh-hhHHHHHHHHHHHH-----hccEEEeecCCCCHHH-HHHHHHHhCcccccccCcchhhccCCchhhh
Confidence 478899999999 99999999998543 2788888888999966 9999999998755543211 11 1
Q ss_pred chHHHHHhhhhhc-cCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecc
Q psy11642 154 GLIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI 207 (372)
Q Consensus 154 G~~~a~n~g~~~a-~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~ 207 (372)
.+..=.|.++... +.+|++=+|+|-+..+.-|-+..=...+.-.++..+.+...
T Consensus 161 ~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~pk~~~~~v~YsRINF~ 215 (347)
T PF06306_consen 161 SLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIPKNDYDVVSYSRINFH 215 (347)
T ss_pred hhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheeeccccceEEecceeEE
Confidence 2344556666664 58999999999998886654433333334444555766543
No 89
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=96.86 E-value=0.01 Score=61.91 Aligned_cols=52 Identities=15% Similarity=0.046 Sum_probs=43.2
Q ss_pred CCCCceEEEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhH
Q psy11642 79 LDLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD 130 (372)
Q Consensus 79 ~~~p~vSVIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~ 130 (372)
.++|.|.|.|+|-+ |+.-...+|+-||++-.||....-+.|-|||.+.=|.+
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~ 400 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHH
Confidence 56999999999965 44457889999999999998888999999998755544
No 90
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=96.75 E-value=0.0048 Score=54.86 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=70.2
Q ss_pred eEEEEEe-cCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhh
Q psy11642 84 ASVILVF-HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 162 (372)
Q Consensus 84 vSVIIp~-yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g 162 (372)
+||||.+ |++. +.|.+.|.++.+... ..||+||=++..... . . ..+... ...|+++..+.|. -..|-.-
T Consensus 1 fTvvi~t~~~R~-~~L~~~l~~l~~~~~---l~~IvVvWn~~~~~P-~-~-~~~~~~-~vpV~~~~~~~ns--LnnRF~p 70 (247)
T PF09258_consen 1 FTVVINTSYKRS-DLLKRLLRHLASSPS---LRKIVVVWNNPNPPP-P-S-SKWPST-GVPVRVVRSSRNS--LNNRFLP 70 (247)
T ss_dssp EEEEEEE-SS-H-HHHHHHHHHHTTSTT---EEEEEEEEE-TS--T-H-H-HHHT----S-EEEEEESSHH--GGGGGS-
T ss_pred CEEEEEecccch-HHHHHHHHHHHcCCC---CCeEEEEeCCCCCCC-c-c-cccCCC-CceEEEEecCCcc--HHhcCcC
Confidence 5899999 9998 999999999944432 458988887733322 1 1 222222 2468888765432 2233334
Q ss_pred hhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe
Q psy11642 163 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 201 (372)
Q Consensus 163 ~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~ 201 (372)
....+.+-|+.+|+|..++.+.|+-..+..++.+..+|+
T Consensus 71 ~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVG 109 (247)
T PF09258_consen 71 DPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVG 109 (247)
T ss_dssp -TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEE
T ss_pred ccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeC
Confidence 456679999999999999999999999999998887776
No 91
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=96.73 E-value=0.013 Score=53.62 Aligned_cols=105 Identities=14% Similarity=0.239 Sum_probs=64.5
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCch------hhHHHHHHHHHHcCCcEEEEecCC----
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKA------DLDQKLEDYIQRFNGKVRLIRNTE---- 151 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~------t~~~~l~~~~~~~~~~v~~i~~~~---- 151 (372)
-...||||+.||....|.-.|.+| +-.- -||||-|.+-.+ ..+ .++.+..-....+-++++..
T Consensus 51 ~~mAIVVP~KdE~l~lleGVL~gI----Ph~c--~iIvVSNS~r~~~d~f~~E~d-lv~~f~~~t~r~~i~vHQkDp~la 123 (393)
T PRK14503 51 GRMAIVVPVKNERLKLLEGVLKGI----PHEC--PIIVVSNSKREPPDRFKLEVD-LVRHFYRLTQRPIIIVHQKDPGLA 123 (393)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcC----CCCC--eEEEEeCCCCCCchHHHHHHH-HHHHHHhhhcCceEEEEcCCHHHH
Confidence 458999999999954444444443 3322 678887764421 122 45556554334566666521
Q ss_pred ------------------CcchHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhc
Q psy11642 152 ------------------REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYS 194 (372)
Q Consensus 152 ------------------n~G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~ 194 (372)
+.|++.+.-.|+..|+ .+||-|+|+|..+ |+...+-+..+..
T Consensus 124 ~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyi-PGaV~EYvk~yAA 186 (393)
T PRK14503 124 EALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYI-PGAVNEYVKIYAA 186 (393)
T ss_pred HHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCC-CchHHHHHHHHHh
Confidence 2456666666665553 6999999999988 5566665555443
No 92
>KOG2571|consensus
Probab=96.70 E-value=0.014 Score=59.65 Aligned_cols=124 Identities=13% Similarity=0.043 Sum_probs=73.8
Q ss_pred CcEEEEecCCcccCCCChHHHHHhhhcCCCE-EEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHHhh
Q psy11642 168 GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKK 246 (372)
Q Consensus 168 gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~-~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (372)
-++|+++|+|+.+.|+.+-.|+..+..++.+ ++|+.|...-+. .+.|...|... + .....
T Consensus 441 v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~~~----------------w~v~~Q~FEY~-I--sh~l~ 501 (862)
T KOG2571|consen 441 VDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKGGS----------------WVVAYQNFEYA-I--SHNLQ 501 (862)
T ss_pred ceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCCCc----------------eEEeHHHHHHH-H--HHHHH
Confidence 4688999999999999999999999987765 455655321111 01111111100 0 00011
Q ss_pred ccCCCCcccCccccccchhccHHHHHH-h-----c------CCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEE
Q psy11642 247 RKYNSEPYKSPTHAGGLFAMDRAFFLE-L-----G------GYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312 (372)
Q Consensus 247 ~~~~~~~~~~~~~~G~~~~irr~~~~~-i-----G------gfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H 312 (372)
...+..--.+...+|++-++|-+++.. - | +..-.... +||--||.++...||.+.|++.+...-
T Consensus 502 Ka~ESvFG~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~--geDR~L~~~llskgy~l~Y~a~s~a~t 577 (862)
T KOG2571|consen 502 KATESVFGCVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSL--GEDRWLCTLLLSKGYRLKYVAASDAET 577 (862)
T ss_pred HhhhhhceeEEecCchhHHHHHHHHhcchHHhhhchhhcCccccccccc--chhHHHHHHHHhccceeeeeccccccc
Confidence 111111112335567777888855432 1 1 11111222 899999999999999999999887763
No 93
>KOG1413|consensus
Probab=96.53 E-value=0.027 Score=51.29 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=110.2
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC---------
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--------- 150 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~--------- 150 (372)
..|.+.||+-..|++ +.|++++..|+.+-+....+-|||--||+..+..+ .+..|-+. +..+.++
T Consensus 65 ~~~v~pvvVf~csR~-~~lr~~v~kll~yrPsaekfpiiVSQD~~~e~vk~-~~~~~g~~----v~~i~~~~h~~~ei~v 138 (411)
T KOG1413|consen 65 WPPVIPVVVFACSRA-DALRRHVKKLLEYRPSAEKFPIIVSQDCEKEAVKK-KLLSYGSD----VSHIQHPMHLKDEISV 138 (411)
T ss_pred CCCceeEEEEecCcH-HHHHHHHHHHHHhCcchhhcCEEEeccCCcHHHHH-HHHHhccc----hhhhcCcccccccccc
Confidence 346788888889998 99999999999988665556778888877755444 66665432 2222221
Q ss_pred ----CC-cc-------hHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhh---hcCCCEEEeeeeecccCCcceee
Q psy11642 151 ----ER-EG-------LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI---YSDRKIMTVPVIDGIDYQTWEFR 215 (372)
Q Consensus 151 ----~n-~G-------~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~---~~~~~~~v~p~i~~~~~~~~~~~ 215 (372)
.. .+ +-.|.|+.+..-+.+.++...+|..+.|++++...... +.++..-.+..
T Consensus 139 ~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsa------------ 206 (411)
T KOG1413|consen 139 PPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSA------------ 206 (411)
T ss_pred CCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeee------------
Confidence 11 11 22356666666678999999999999999888776543 33443322211
Q ss_pred eccCCCCccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhc-CCCCCCcccchhhHHHHHH
Q psy11642 216 SVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGGENFELSFK 294 (372)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iG-gfd~~~~~~g~ED~dl~~r 294 (372)
|+.+-+...+ ........|++..+.|=..|+.+++|+++. +|...| ++|| +-..
T Consensus 207 --------------WNDNGk~~~I------d~~~~~~lYRtDFFpGLGWml~~~~W~ELsp~wP~~f----WDDW-mr~p 261 (411)
T KOG1413|consen 207 --------------WNDNGKKQTI------DSTRPSLLYRTDFFPGLGWMLTKKLWEELSPKWPVAF----WDDW-MRIP 261 (411)
T ss_pred --------------eccCCCcccc------cccccchhhhccccccchHHHHHHHHHhhCCCCcccc----hhhh-hhch
Confidence 1111000000 001122335577778888999999999987 455443 2443 3333
Q ss_pred HHHcCCeEEEEccc
Q psy11642 295 IWMCGGSIEWVPCS 308 (372)
Q Consensus 295 ~~~~G~~i~~~p~~ 308 (372)
..+.| +...-|+.
T Consensus 262 e~rK~-R~cIRPEi 274 (411)
T KOG1413|consen 262 ENRKG-RQCIRPEI 274 (411)
T ss_pred hhhcc-ccccChHh
Confidence 33333 55555544
No 94
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=96.51 E-value=0.026 Score=48.34 Aligned_cols=178 Identities=12% Similarity=0.122 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCC--chhhHHHHHHHHHHcCCcEEEEecCCC-cc----hHHHHHhhhhhcc-
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSS--KADLDQKLEDYIQRFNGKVRLIRNTER-EG----LIRTRSRGAKESR- 167 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~--d~t~~~~l~~~~~~~~~~v~~i~~~~n-~G----~~~a~n~g~~~a~- 167 (372)
..|++|-.+......... .++.|-..+. +....+.|.+-.++++. +-.....+. .+ ...+.+-+.+.+.
T Consensus 4 ~~IR~TW~~~~~~~~~~~--~~~FvvG~~~~~~~~~~~~l~~E~~~y~D-il~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 4 QAIRETWGNQRNFKGVRV--KVVFVVGESPNSDSDLQEALQEEAEKYGD-ILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred HHHHHHHhcccccCCCcE--EEEEEEecCCCCcHHHHHHhhhhhhhcCc-eEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 455566555443333333 5554444444 45555455555555543 433333222 22 2345555666665
Q ss_pred CcEEEEecCCcccCCCChHHHHHhhh--cCCCEEEeeeeecccCCcceeeeccCCCCccc-cccccccccccCCCcHHHH
Q psy11642 168 GEVIVFLDAHCEVGLNWLPPLLAPIY--SDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYR-GIFEWGMLYKENELPEREA 244 (372)
Q Consensus 168 gd~i~flD~D~~~~~~~L~~ll~~~~--~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (372)
.+|++.+|+|+.+.++-|...+.... .......+..... ....+ ....|.......
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~--------------~~~~r~~~~kw~v~~~~y------- 139 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKN--------------GPPIRDPSSKWYVSEEEY------- 139 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccC--------------CccccccccCceeeeeec-------
Confidence 89999999999999888877777661 1122222211100 00000 011121111000
Q ss_pred hhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEE
Q psy11642 245 KKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIE 303 (372)
Q Consensus 245 ~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~ 303 (372)
....-.+.++|++.++++++.+.+...-.....+..||+-+++-+...|.+..
T Consensus 140 ------~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~ 192 (195)
T PF01762_consen 140 ------PDDYYPPYCSGGGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPI 192 (195)
T ss_pred ------ccccCCCcCCCCeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCcc
Confidence 01112456689999999999998874333333333799999888888886543
No 95
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=96.24 E-value=0.035 Score=47.89 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=64.4
Q ss_pred CceEEEEEecCCC--hhHHHHHHHHHHccCCcCCccEEEEEeCCC-CchhhHHHHHHHHHHcCCcEEEEecCCC------
Q psy11642 82 PKASVILVFHNEG--FSSLMRTVHSIIKRTPAQYLEEIILVDDFS-SKADLDQKLEDYIQRFNGKVRLIRNTER------ 152 (372)
Q Consensus 82 p~vSVIIp~yn~~--~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S-~d~t~~~~l~~~~~~~~~~v~~i~~~~n------ 152 (372)
|.+-||.|||.+. ...|.+.-+.|.. -+ ++ ..|||+|+. ..+ ...++.++.+-..+.+..+.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~l-Vp-~l--~WIVVEd~~~~t~----~va~lL~~sgl~y~HL~~~~~~~~~~~ 72 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRL-VP-PL--HWIVVEDSEEKTP----LVAELLRRSGLMYTHLNAKTPSDPTWL 72 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhc-CC-ce--EEEEEeCCCCCCH----HHHHHHHHcCCceEEeccCCCCCcccC
Confidence 5688999999886 2356666666543 33 55 899999998 322 344455554434444433322
Q ss_pred --cchHHHHHhhhhhcc-------CcEEEEecCCcccCCCChHHHH
Q psy11642 153 --EGLIRTRSRGAKESR-------GEVIVFLDAHCEVGLNWLPPLL 189 (372)
Q Consensus 153 --~G~~~a~n~g~~~a~-------gd~i~flD~D~~~~~~~L~~ll 189 (372)
.| ...||.|++..+ .-+|.|.|+|...+-..+++|-
T Consensus 73 ~~rg-~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 73 KPRG-VEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred Cccc-HHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 23 467999987653 3589999999988777777743
No 96
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=96.16 E-value=0.54 Score=43.00 Aligned_cols=100 Identities=10% Similarity=0.188 Sum_probs=66.5
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHH---HcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~---~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
++|.++.+ .|...|.++..... .+|+||-.....+ .++++.. .++.++.++..++..|.+.|...|.
T Consensus 28 Llpv~gkP--mI~~~l~~l~~aGi----~~I~ii~~~~~~~----~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~ 97 (292)
T PRK15480 28 LLPIYDKP--MIYYPLSTLMLAGI----RDILIISTPQDTP----RFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGE 97 (292)
T ss_pred EeEECCEE--HHHHHHHHHHHCCC----CEEEEEecCCchH----HHHHHHcCccccCceeEEEECCCCCCHHHHHHHHH
Confidence 78888865 88899988886543 2787665432222 3344432 2344677888888899999999888
Q ss_pred hhccC-cEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 164 KESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 164 ~~a~g-d~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
..... ++++++ +|..+...-+..+++.+.+...
T Consensus 98 ~~i~~~~~~lv~-gD~i~~~~~l~~ll~~~~~~~~ 131 (292)
T PRK15480 98 EFIGGDDCALVL-GDNIFYGHDLPKLMEAAVNKES 131 (292)
T ss_pred HHhCCCCEEEEE-CCeeeeccCHHHHHHHHHhCCC
Confidence 87654 555554 6666655568888887655433
No 97
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=96.11 E-value=0.63 Score=40.27 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=63.9
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cCCcEEEEecCCCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
++|.-+. ..|..+|+.+.+... .+|+|+-+... + .+.++... ++..+.+.......|.+.+.-.++
T Consensus 23 ll~i~g~--pli~~~l~~l~~~g~----~~v~vv~~~~~-~----~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~ 91 (223)
T cd06915 23 LAPVAGR--PFLEYLLEYLARQGI----SRIVLSVGYLA-E----QIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNAL 91 (223)
T ss_pred ccEECCc--chHHHHHHHHHHCCC----CEEEEEcccCH-H----HHHHHHcCccccCceEEEEECCCCCcchHHHHHHH
Confidence 3444454 588999988876532 16666654322 2 22333332 122344555556788888888888
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEE
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 199 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~ 199 (372)
+....+.++++++|..+. ..+..++..+.+....+
T Consensus 92 ~~~~~~~~lv~~~D~~~~-~~~~~~l~~~~~~~~~~ 126 (223)
T cd06915 92 PKLPEDQFLVLNGDTYFD-VDLLALLAALRASGADA 126 (223)
T ss_pred hhcCCCCEEEEECCcccC-CCHHHHHHHHHhCCCcE
Confidence 887778899999999775 45778888776544433
No 98
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=96.07 E-value=0.013 Score=52.88 Aligned_cols=113 Identities=13% Similarity=0.213 Sum_probs=70.3
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHc---CCcEEEEecCC--CcchHH
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF---NGKVRLIRNTE--REGLIR 157 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~---~~~v~~i~~~~--n~G~~~ 157 (372)
.+.||||+-........+.-+++++ .+ .+|||-|+...+.++ +.+-+--+. ..-.+++-.+. ...-.+
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~~----~~--hliiv~d~~~~~~~~-~p~g~~~~~y~~~di~~~lg~~~~i~~~~~a 81 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFFS----PY--HLIIVQDPDPNEEIK-VPEGFDYEVYNRNDIERVLGAKTLIPFKGDA 81 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhhc----ce--eEEEEeCCCcccccc-CCcccceeeecHhhHHhhcCCcccccccccc
Confidence 4889999988553344455556654 22 899999887655443 222210000 00011111111 122456
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEee
Q psy11642 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 202 (372)
Q Consensus 158 a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p 202 (372)
.||.|.-.++.+|++++|+|+.+..|+.-..++.+.++.....+|
T Consensus 82 ~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~ 126 (348)
T PF03214_consen 82 CRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTP 126 (348)
T ss_pred hhhhHhhhcccceEEEEccccccccCCccceehhhhccceeeecc
Confidence 899999999999999999999998888877777777765555443
No 99
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=96.01 E-value=0.93 Score=40.32 Aligned_cols=188 Identities=14% Similarity=0.095 Sum_probs=112.9
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHH---HHcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI---QRFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~---~~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
++|.|+.+ .|.-+|..|...-.. +|+||-.--+-.. .+++. +++...+.++.+++..|++.|.-.|-
T Consensus 25 LlpV~~KP--mi~y~l~~L~~aGI~----dI~II~~~~~~~~----~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~ 94 (286)
T COG1209 25 LLPVYDKP--MIYYPLETLMLAGIR----DILIVVGPEDKPT----FKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAE 94 (286)
T ss_pred cceecCcc--hhHhHHHHHHHcCCc----eEEEEecCCchhh----hhhhhcCccccCcceEEEecCCCCcHHHHHHHHH
Confidence 78999976 888899888765533 6666643222222 22222 23456899999999999999999999
Q ss_pred hhcc-CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHH
Q psy11642 164 KESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER 242 (372)
Q Consensus 164 ~~a~-gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (372)
.... .+++++|. |.++.. -|++++..+.+....+.+.....-|...+-........ +-..+
T Consensus 95 ~fv~~~~f~l~LG-DNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~-------------~v~~l--- 156 (286)
T COG1209 95 DFVGDDDFVLYLG-DNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDG-------------KVIGL--- 156 (286)
T ss_pred hhcCCCceEEEec-Cceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCC-------------cEEEe---
Confidence 9998 55555554 555545 78888888776444333322222233322221111000 00000
Q ss_pred HHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEccc
Q psy11642 243 EAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCS 308 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~ 308 (372)
...+.. -++.....+..+++.++|+.+-...+.-..- .|=.|.--.+...|..+.....-
T Consensus 157 ----~EKP~~-P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGE-lEITd~i~~~i~~G~~~~~~~~~ 216 (286)
T COG1209 157 ----EEKPKE-PKSNLAVTGLYFYDPSVFEAIKQIKPSARGE-LEITDAIDLYIEKGYLVVAILIR 216 (286)
T ss_pred ----EECCCC-CCCceeEEEEEEeChHHHHHHHcCCCCCCCc-eEehHHHHHHHHcCcEEEEEEcc
Confidence 001111 1234444567789999999887766654432 56677888888899887776543
No 100
>PLN02458 transferase, transferring glycosyl groups
Probab=95.84 E-value=0.056 Score=48.96 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=67.4
Q ss_pred CCCCceEEEEEecC-CC--hhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcc-
Q psy11642 79 LDLPKASVILVFHN-EG--FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG- 154 (372)
Q Consensus 79 ~~~p~vSVIIp~yn-~~--~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G- 154 (372)
.+.+.|-||.|||. +. ..+|.+.-+.|. .-++++ ..|||+|++.... +.++.++.+-..+.+..+.|..
T Consensus 109 ~~~rlIivVTPTY~rR~~Q~a~LTRLahTL~-lVp~pL--~WIVVEd~~~t~~----va~lLrrsGl~y~HL~~k~~~~~ 181 (346)
T PLN02458 109 APRRLVIIVTPISTKDRYQGVLLRRLANTLR-LVPPPL--LWIVVEGQSDSEE----VSEMLRKTGIMYRHLVFKENFTD 181 (346)
T ss_pred CCCceEEEECCCCCCcchhHHHHHHHHHHHh-cCCCCc--eEEEEeCCCCCHH----HHHHHHHcCCceEEeccCCCCCC
Confidence 34567999999998 33 245666666654 344456 8999998775443 4445555444445554444432
Q ss_pred ----hHHHHHhhhhhcc----CcEEEEecCCcccCCCChHHH
Q psy11642 155 ----LIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPL 188 (372)
Q Consensus 155 ----~~~a~n~g~~~a~----gd~i~flD~D~~~~~~~L~~l 188 (372)
....||.|++..+ .-+|.|.|+|...+-+.+++|
T Consensus 182 ~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 182 PEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred ccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHH
Confidence 2456999998774 468999999988877766664
No 101
>PLN02917 CMP-KDO synthetase
Probab=95.66 E-value=0.61 Score=42.67 Aligned_cols=184 Identities=13% Similarity=0.170 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec--CCCcchHHHHHhhhhhcc--CcEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESR--GEVI 171 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~--~~n~G~~~a~n~g~~~a~--gd~i 171 (372)
..|..+++.+..... .. +|+|+.| ++ .+.+++..+ .+.++.+ ....|.+++ ..|++... .|++
T Consensus 73 PLL~~vi~~a~~~~~-~~--~VVV~~~---~e----~I~~~~~~~--~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~V 139 (293)
T PLN02917 73 PMIQRTWERAKLATT-LD--HIVVATD---DE----RIAECCRGF--GADVIMTSESCRNGTERC-NEALKKLEKKYDIV 139 (293)
T ss_pred EHHHHHHHHHHcCCC-CC--EEEEECC---hH----HHHHHHHHc--CCEEEeCCcccCCchHHH-HHHHHhccCCCCEE
Confidence 578888888765432 21 5555422 22 233344443 3444433 344565555 45666553 6899
Q ss_pred EEecCCcc-cCCCChHHHHHhhhcCCCEEEeeeeeccc-CCcceeeecc--CCCCccccccccccccccCCCcHHHHhhc
Q psy11642 172 VFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDGID-YQTWEFRSVY--EPDHHYRGIFEWGMLYKENELPEREAKKR 247 (372)
Q Consensus 172 ~flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~i~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (372)
+++++|.. +.+..|+.+++.+.++...++...+..++ .+...|.... ... .|. .+.|....++.. +
T Consensus 140 lil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~---~g~---alyfsr~~Ipe~----k 209 (293)
T PLN02917 140 VNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDN---QGY---AIYFSRGLIPYN----K 209 (293)
T ss_pred EEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECC---CCe---EEEeecCcCCcC----C
Confidence 99999996 57899999999886655433332221111 1111121110 000 010 001111111110 0
Q ss_pred cCCCCcccCccccccchhccHHHHHHhcCCCCCCcc--cchhhHHHHHHHHHcCCeEEEEc
Q psy11642 248 KYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLV--WGGENFELSFKIWMCGGSIEWVP 306 (372)
Q Consensus 248 ~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~--~g~ED~dl~~r~~~~G~~i~~~p 306 (372)
......-.......|.++++++.+..+...++.-.- +.-||+ ++...|.++..++
T Consensus 210 d~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl----~~le~G~~i~~~~ 266 (293)
T PLN02917 210 SGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQL----KVLENGYKMKVIK 266 (293)
T ss_pred CcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHH----HHHhCCCceEEEE
Confidence 000000112344678899999999887766554321 112333 4778999987765
No 102
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.63 E-value=0.08 Score=53.28 Aligned_cols=105 Identities=11% Similarity=0.206 Sum_probs=64.7
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCC---ch---hhHHHHHHHHHHcCCcEEEEecCC----
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KA---DLDQKLEDYIQRFNGKVRLIRNTE---- 151 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~---d~---t~~~~l~~~~~~~~~~v~~i~~~~---- 151 (372)
-...||||+.||....| +.++.--+-.- -||||-|.+- |. ..+ .++.++.-....+-++++..
T Consensus 55 ~~~aivvp~k~e~~~~~----~gvl~~ip~~c--~ii~vsns~r~~~d~~~~e~~-~~~~~~~~~~~~~~~vhq~dp~~a 127 (694)
T PRK14502 55 KKMAIVLPIKDEDLKVF----EGVLSGIPHDC--LMIVISNSSKQEVDNFKNEKD-IVNRFCRITHRQAIVVHQKNPELA 127 (694)
T ss_pred hCcEEEEEcCCCchhHH----hhHhhcCCCCC--eEEEEeCCCCCchHHHHHHHH-HHHHHHHhhcCceEEEEcCCHHHH
Confidence 45899999999995444 44444333322 6788877654 21 122 45556554334566666521
Q ss_pred ------------------CcchHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhc
Q psy11642 152 ------------------REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYS 194 (372)
Q Consensus 152 ------------------n~G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~ 194 (372)
+.|++.+.-.|+..|+ .+||-|+|+|..+ |+...+.+..+..
T Consensus 128 ~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~-pg~v~ey~~~yaa 190 (694)
T PRK14502 128 NAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYI-PGAVWEYAKHFAT 190 (694)
T ss_pred HHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCC-CchHHHHHHHHHh
Confidence 2466667777766664 6999999999988 4555555554443
No 103
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=95.54 E-value=0.3 Score=42.93 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=61.6
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|..+. ..|..+|+++.++... +|+||-.... +...+.+.++....+..+.+....+..|.+.+...+....
T Consensus 25 llpv~g~--pli~~~l~~l~~~g~~----~v~iv~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~ 97 (233)
T cd06425 25 LVEFCNK--PMIEHQIEALAKAGVK----EIILAVNYRP-EDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLL 97 (233)
T ss_pred cCeECCc--chHHHHHHHHHHCCCc----EEEEEeeeCH-HHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHh
Confidence 3455554 5899999998876432 5655554322 2222234333222222233333445578888888888876
Q ss_pred cC--cEEEEecCCcccCCCChHHHHHhhhcCCCE
Q psy11642 167 RG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 167 ~g--d~i~flD~D~~~~~~~L~~ll~~~~~~~~~ 198 (372)
.. +-++++++|.....+ +..+++.+.+.+..
T Consensus 98 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 130 (233)
T cd06425 98 GDDDEPFFVLNSDVICDFP-LAELLDFHKKHGAE 130 (233)
T ss_pred ccCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCCC
Confidence 53 345667999877655 68888877765543
No 104
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=95.29 E-value=0.14 Score=45.48 Aligned_cols=188 Identities=14% Similarity=0.018 Sum_probs=105.8
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC---CcEEEEecCCCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~---~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
.+|..|.. ..|...|+.+.+.... ++|+|-.+...+ .+.++..... ..+.++..+...|.+.|...+.
T Consensus 24 ll~i~g~~-pli~~~l~~l~~~g~~----~ii~V~~~~~~~----~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~ 94 (248)
T PF00483_consen 24 LLPIGGKY-PLIDYVLENLANAGIK----EIIVVVNGYKEE----QIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQAL 94 (248)
T ss_dssp GSEETTEE-EHHHHHHHHHHHTTCS----EEEEEEETTTHH----HHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTH
T ss_pred cceecCCC-cchhhhhhhhcccCCc----eEEEEEeecccc----cccccccccccccccceeeecccccchhHHHHHHH
Confidence 45666774 5899999998875432 655554443332 3444444422 2478888888889999999999
Q ss_pred hhccCcE----EEEecCCcccCCCChHHHHHhhhcCCC--EEEeeeeecccCCcceeeeccCCCCccccccccccccccC
Q psy11642 164 KESRGEV----IVFLDAHCEVGLNWLPPLLAPIYSDRK--IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKEN 237 (372)
Q Consensus 164 ~~a~gd~----i~flD~D~~~~~~~L~~ll~~~~~~~~--~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (372)
.....+. ++++.+|..... -+..+++.+.+... .+++......+...+.+......+ ... .+..
T Consensus 95 ~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~-~V~-------~~~E- 164 (248)
T PF00483_consen 95 DFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG-RVI-------RIVE- 164 (248)
T ss_dssp HHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS-EEE-------EEEE-
T ss_pred HHhhhccccceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccceeeeeccce-eEE-------EEec-
Confidence 9888665 899999998877 77888887776555 222222222222211111111000 000 0100
Q ss_pred CCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEE
Q psy11642 238 ELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEW 304 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~ 304 (372)
.+..+..+..+.+|..++++++|..+-...+.......+=.|+.-.+...|..+..
T Consensus 165 -----------KP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~ 220 (248)
T PF00483_consen 165 -----------KPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYA 220 (248)
T ss_dssp -----------SCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEE
T ss_pred -----------cCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEE
Confidence 01111113355667788999999988211111111002335677788888876644
No 105
>KOG1476|consensus
Probab=95.25 E-value=0.18 Score=45.34 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCceEEEEEecCCCh--hHHHHHHHHHHccCCcCCccEEEEEeCCC-CchhhHHHHHHHHHHcCCcEEEEecCCCcch--
Q psy11642 81 LPKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFS-SKADLDQKLEDYIQRFNGKVRLIRNTEREGL-- 155 (372)
Q Consensus 81 ~p~vSVIIp~yn~~~--~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S-~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~-- 155 (372)
.|+|-||.|||.+.. ..|.+.-++| .+- +++ ..|||+||+ ... ....+.++.+-..+++..+...+.
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL-~~V-~nL--hWIVVEd~~~~~p----~v~~~L~rtgl~ythl~~~t~~~~~~ 157 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTL-RLV-PNL--HWIVVEDGEGTTP----EVSGILRRTGLPYTHLVHKTPMGYKA 157 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHH-hhc-CCe--eEEEEecCCCCCH----HHHHHHHHcCCceEEEeccCCCCCcc
Confidence 689999999999861 2344444444 333 366 899999994 333 333444443434455555555543
Q ss_pred ---HHHHHhhhhhcc---------CcEEEEecCCcccCCCChHH
Q psy11642 156 ---IRTRSRGAKESR---------GEVIVFLDAHCEVGLNWLPP 187 (372)
Q Consensus 156 ---~~a~n~g~~~a~---------gd~i~flD~D~~~~~~~L~~ 187 (372)
-..||.|++..+ .-+|.|-|+|...+-..+++
T Consensus 158 ~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e 201 (330)
T KOG1476|consen 158 RRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE 201 (330)
T ss_pred ccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH
Confidence 357888887654 45888999998887766666
No 106
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=95.24 E-value=1.9 Score=38.17 Aligned_cols=191 Identities=13% Similarity=0.136 Sum_probs=95.9
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec--CCCcchHHHHHhhhhh
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKE 165 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~--~~n~G~~~a~n~g~~~ 165 (372)
++..+. ..|..+++.+.+.. . .+|+|+-|. + .+.+..+.++ +.++.. ....|..+... +++.
T Consensus 19 ~~l~Gk--Pli~~~le~~~~~~-~---d~VvVvt~~---~----~i~~~~~~~g--~~~v~~~~~~~~Gt~r~~~-~~~~ 82 (238)
T TIGR00466 19 EDIFGK--PMIVHVAENANESG-A---DRCIVATDD---E----SVAQTCQKFG--IEVCMTSKHHNSGTERLAE-VVEK 82 (238)
T ss_pred cccCCc--CHHHHHHHHHHhCC-C---CeEEEEeCH---H----HHHHHHHHcC--CEEEEeCCCCCChhHHHHH-HHHH
Confidence 444453 58999999876532 2 277777441 2 2334444443 444432 22344322222 2222
Q ss_pred ---ccCcEEEEecCCcc-cCCCChHHHHHhhhcCCCEEEeeeeeccc------CCcceeeeccCCCCccccccccccccc
Q psy11642 166 ---SRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDGID------YQTWEFRSVYEPDHHYRGIFEWGMLYK 235 (372)
Q Consensus 166 ---a~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
...++++++|+|.- ++++.++.+++.+.+....++++.+...+ .++...... .++.. +.+.
T Consensus 83 l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~-~~g~a--------lyfs 153 (238)
T TIGR00466 83 LALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLD-SQGYA--------LYFS 153 (238)
T ss_pred hCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeC-CCCeE--------EEec
Confidence 24689999999996 68899999999986543334443332222 112221110 00000 0011
Q ss_pred cCCCcHHHHhhccCCCCccc-CccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEc
Q psy11642 236 ENELPEREAKKRKYNSEPYK-SPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVP 306 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p 306 (372)
...++......... ..|.. .-..+-|..+++++++++.-.+.+...-- .|..|. +|+...|++|.++.
T Consensus 154 r~~ip~~R~~~~~~-~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~-~e~leq-lr~le~g~~i~~~~ 222 (238)
T TIGR00466 154 RSLIPFDRDFFAKR-QTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEE-IEKLEQ-LRVLYYGEKIHVKI 222 (238)
T ss_pred CCCCCCCCCccccc-ccccccceeEEEEEEeCCHHHHHHHHhCCCCcccc-cchhHH-HhhhhcCCceEEEE
Confidence 11111000000000 00000 01224567899999999977666544321 455553 68889999998765
No 107
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=95.24 E-value=0.47 Score=42.42 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=63.4
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|.-++ ..|...|.++.+..-- .+|+||-.... +...+.+.+........+.++...+..|.+.|...+....
T Consensus 25 llpv~g~--plI~~~l~~l~~~~gi---~~i~iv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l 98 (257)
T cd06428 25 LFPVAGK--PMIHHHIEACAKVPDL---KEVLLIGFYPE-SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQI 98 (257)
T ss_pred cCeECCe--eHHHHHHHHHHhcCCC---cEEEEEecCCH-HHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHh
Confidence 4556665 5899999988764211 26777754432 2222233322222223455555556688888876666554
Q ss_pred ---cCcEEEEecCCcccCCCChHHHHHhhhcCCCE
Q psy11642 167 ---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 167 ---~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~ 198 (372)
..+.++++.+|.....+ +..+++...+....
T Consensus 99 ~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~~~~~ 132 (257)
T cd06428 99 LAGNPSAFFVLNADVCCDFP-LQELLEFHKKHGAS 132 (257)
T ss_pred hccCCCCEEEEcCCeecCCC-HHHHHHHHHHcCCC
Confidence 24678889999887554 88888887665543
No 108
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=95.21 E-value=0.093 Score=41.46 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=47.7
Q ss_pred ceEEEEEecCCChhHHHHHHHHH---HccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHH
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSI---IKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR 159 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl---~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~ 159 (372)
++.||||.+|+. +.|...|..+ +++.. ..+.|+||+...+ ..++.+.-.
T Consensus 48 kvAiIIPyRdR~-~hL~~fl~~l~~~L~rQ~--~~y~I~vieQ~~~-------------------------~~FNRg~L~ 99 (136)
T PF13733_consen 48 KVAIIIPYRDRE-EHLRIFLPHLHPFLQRQQ--LDYRIFVIEQVDN-------------------------GPFNRGKLM 99 (136)
T ss_dssp EEEEEEEESS-H-HHHHHHHHHHHHHHHHTT---EEEEEEEEE-SS-------------------------S---HHHHH
T ss_pred ceEEEEEeCCHH-HHHHHHHHHHHHHHhhCc--ceEEEEEEeeccC-------------------------CCCchhhhh
Confidence 799999999998 8887777644 43322 2348888875432 224466777
Q ss_pred Hhhhhhcc----CcEEEEecCCcccCCCC
Q psy11642 160 SRGAKESR----GEVIVFLDAHCEVGLNW 184 (372)
Q Consensus 160 n~g~~~a~----gd~i~flD~D~~~~~~~ 184 (372)
|.|...|. .|.++|-|.|..+..+.
T Consensus 100 NvGf~eA~~~~~~dc~ifHDVDllP~~~~ 128 (136)
T PF13733_consen 100 NVGFLEALKDDDFDCFIFHDVDLLPENDR 128 (136)
T ss_dssp HHHHHHHHHHS--SEEEEE-TTEEESBTT
T ss_pred hHHHHHHhhccCCCEEEEecccccccCCC
Confidence 88887773 68999999998875543
No 109
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=95.19 E-value=1.5 Score=39.95 Aligned_cols=99 Identities=9% Similarity=0.114 Sum_probs=64.0
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHH---HcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~---~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
.+|+++.+ .|...|..+...... +|+||-.....+ .++++.. .++.++.++..++..|.+.|.-.|.
T Consensus 24 Llpv~gkP--mI~~~L~~l~~aGi~----~I~iv~~~~~~~----~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~ 93 (286)
T TIGR01207 24 LLPIYDKP--MIYYPLSTLMLAGIR----DILIISTPQDTP----RFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGE 93 (286)
T ss_pred eeEECCEE--hHHHHHHHHHHCCCC----EEEEEecCCcHH----HHHHHhccccccCceEEEEEccCCCCHHHHHHHHH
Confidence 67888864 888888888765432 676664322212 2333332 2333577777777899999999998
Q ss_pred hhccC-cEEEEecCCcccCCCChHHHHHhhhcCC
Q psy11642 164 KESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDR 196 (372)
Q Consensus 164 ~~a~g-d~i~flD~D~~~~~~~L~~ll~~~~~~~ 196 (372)
..... +++++ ..|..+...-+..+++...+..
T Consensus 94 ~~l~~~~~~li-~gD~i~~~~~l~~ll~~~~~~~ 126 (286)
T TIGR01207 94 DFIGGDPSALV-LGDNIFYGHDLSDLLKRAAARE 126 (286)
T ss_pred HHhCCCCEEEE-ECCEeccccCHHHHHHHHHhcC
Confidence 87654 45555 5776666667888888765443
No 110
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=95.06 E-value=0.11 Score=47.44 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=66.8
Q ss_pred CCceEEEEEecCCC-hhHHHHHHHHHHccCCcCCccEE-EEEeCCCCch-hhHHHHHHHHHHcC-----CcEEEEecCCC
Q psy11642 81 LPKASVILVFHNEG-FSSLMRTVHSIIKRTPAQYLEEI-ILVDDFSSKA-DLDQKLEDYIQRFN-----GKVRLIRNTER 152 (372)
Q Consensus 81 ~p~vSVIIp~yn~~-~~~l~~~l~Sl~~qt~~~~~~eI-IvVDd~S~d~-t~~~~l~~~~~~~~-----~~v~~i~~~~n 152 (372)
.++++|=||+-.++ .++|..||.||+....+....++ |||==+.+|. ....+.+++...+. +.+.+|..+..
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~ 130 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS 130 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence 34589999986543 27999999999987655322122 2222222222 22223333332221 23455543322
Q ss_pred --------------------------cchHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCC
Q psy11642 153 --------------------------EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 196 (372)
Q Consensus 153 --------------------------~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~ 196 (372)
.-.+-.++.+ ...|+|++.|.+|+.+.++|+..+...+....
T Consensus 131 ~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~--~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~ 198 (297)
T PF04666_consen 131 YYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC--QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWE 198 (297)
T ss_pred cCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH--HhcCCeEEEecCCeEechhHHHHHHHHHHHhc
Confidence 1222233332 23589999999999999999999999987654
No 111
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=2.7 Score=39.62 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=75.3
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cCCcEEEEecCCCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
.+|.-|.+ .|...|++|.++... |++|+- +.. .+.++++... ++.++.++...+..|-+++.-.+.
T Consensus 26 llpI~gkP--ii~~~l~~L~~~Gv~----eivi~~-~y~----~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~ 94 (358)
T COG1208 26 LLPIAGKP--LIEYVLEALAAAGVE----EIVLVV-GYL----GEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNAL 94 (358)
T ss_pred cceeCCcc--HHHHHHHHHHHCCCc----EEEEEe-ccc----hHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHH
Confidence 45666865 899999999876543 777772 222 2255555544 345788888888899999999999
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhhcCC
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 196 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~ 196 (372)
....++-++++..|....-+ +..|++...+..
T Consensus 95 ~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~ 126 (358)
T COG1208 95 DLLGGDDFLVLNGDVLTDLD-LSELLEFHKKKG 126 (358)
T ss_pred HhcCCCcEEEEECCeeeccC-HHHHHHHHHhcc
Confidence 99888999999999999988 999999988773
No 112
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=94.83 E-value=2.2 Score=37.54 Aligned_cols=97 Identities=9% Similarity=0.123 Sum_probs=60.4
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHH---HcCCcEEEEecCCCcchHHHHHhhhh
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~---~~~~~v~~i~~~~n~G~~~a~n~g~~ 164 (372)
+|.-+. ..|..+|+++.+... .+|+||-.....+ .+.++.. .++..+.+...+...|.+.|...+..
T Consensus 26 lpv~~~--pli~~~l~~l~~~gi----~~i~vv~~~~~~~----~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~ 95 (240)
T cd02538 26 LPVYDK--PMIYYPLSTLMLAGI----REILIISTPEDLP----LFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEE 95 (240)
T ss_pred eEECCE--EhHHHHHHHHHHCCC----CEEEEEeCcchHH----HHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHH
Confidence 344453 588999998876432 2677765432211 2333332 12224555555556889999988888
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhc
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 194 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~ 194 (372)
....+-++++.+|..+.+.-+..+++...+
T Consensus 96 ~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~ 125 (240)
T cd02538 96 FIGDDPVCLILGDNIFYGQGLSPILQRAAA 125 (240)
T ss_pred hcCCCCEEEEECCEEEccHHHHHHHHHHHh
Confidence 776565667788877766567888877654
No 113
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=94.80 E-value=0.14 Score=42.09 Aligned_cols=102 Identities=15% Similarity=0.265 Sum_probs=72.9
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC-CCcchHHHHHhhhhhc
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKES 166 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~-~n~G~~~a~n~g~~~a 166 (372)
++. +.. ..|.++|+.+.+.... +|+|+-.. + .+...... ..++++.++ ...|...+.-.|+..+
T Consensus 19 ~~i-~g~-~li~~~l~~l~~~~~~----~Ivvv~~~--~-----~~~~~~~~--~~~~~v~~~~~~~G~~~sl~~a~~~~ 83 (160)
T PF12804_consen 19 LPI-GGK-PLIERVLEALREAGVD----DIVVVTGE--E-----EIYEYLER--YGIKVVVDPEPGQGPLASLLAALSQL 83 (160)
T ss_dssp SEE-TTE-EHHHHHHHHHHHHTES----EEEEEEST--H-----HHHHHHTT--TTSEEEE-STSSCSHHHHHHHHHHTS
T ss_pred eeE-CCc-cHHHHHHHHhhccCCc----eEEEecCh--H-----HHHHHHhc--cCceEEEeccccCChHHHHHHHHHhc
Confidence 444 555 7999999988776422 78887654 2 12222233 257777664 4689999999999998
Q ss_pred -cCcEEEEecCCcc-cCCCChHHHHHhhhcCCCEEEeeee
Q psy11642 167 -RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVI 204 (372)
Q Consensus 167 -~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~i 204 (372)
..+.++++.+|.. ++++.++.+++.+.+.+..++++..
T Consensus 84 ~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 84 PSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp TTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 8999999999995 5889999999999876666665443
No 114
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=94.79 E-value=0.29 Score=41.63 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=60.5
Q ss_pred CCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC--CcchHHHHHhhhhhccCc
Q psy11642 92 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGLIRTRSRGAKESRGE 169 (372)
Q Consensus 92 n~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~--n~G~~~a~n~g~~~a~gd 169 (372)
+.. ..|..+++.+.. . ..+|+||-+.. .+ .+ . .. .++++.... ..|...+...|++....+
T Consensus 28 ~g~-~ll~~~i~~l~~-~----~~~i~vv~~~~----~~-~~---~-~~--~~~~v~~~~~~~~g~~~~i~~~l~~~~~~ 90 (193)
T PRK00317 28 NGK-PLIQHVIERLAP-Q----VDEIVINANRN----LA-RY---A-AF--GLPVIPDSLADFPGPLAGILAGLKQARTE 90 (193)
T ss_pred CCE-EHHHHHHHHHhh-h----CCEEEEECCCC----hH-HH---H-hc--CCcEEeCCCCCCCCCHHHHHHHHHhcCCC
Confidence 444 688999988862 1 12777774321 11 11 1 21 344554432 367778888888888889
Q ss_pred EEEEecCCcc-cCCCChHHHHHhhhcCCCEEE
Q psy11642 170 VIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMT 200 (372)
Q Consensus 170 ~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v 200 (372)
+++++++|.. ++++.++.+++.+.+.+..++
T Consensus 91 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 122 (193)
T PRK00317 91 WVLVVPCDTPFIPPDLVARLAQAAGKDDADVA 122 (193)
T ss_pred eEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEE
Confidence 9999999994 588999999998765544433
No 115
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.67 E-value=0.066 Score=46.37 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC--cchHHHHHhhhhhccCcEEEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--EGLIRTRSRGAKESRGEVIVF 173 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n--~G~~~a~n~g~~~a~gd~i~f 173 (372)
+.|.++|++|.+.... |++||-+|--.+ .++++..+++-..+++.++.- .+-+..+-.|..++.++ +++
T Consensus 32 ~ii~~~i~~L~~~gi~----e~vvV~~g~~~~----lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii 102 (239)
T COG1213 32 EIIYRTIENLAKAGIT----EFVVVTNGYRAD----LVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FIL 102 (239)
T ss_pred EeHHHHHHHHHHcCCc----eEEEEeccchHH----HHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-EEE
Confidence 5899999999887643 888888765533 777888887767888887432 23345666777778887 788
Q ss_pred ecCCcccCCCChHHHHHhh
Q psy11642 174 LDAHCEVGLNWLPPLLAPI 192 (372)
Q Consensus 174 lD~D~~~~~~~L~~ll~~~ 192 (372)
+++|....|..++.++++-
T Consensus 103 ~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 103 VMSDHVYEPSILERLLEAP 121 (239)
T ss_pred EeCCEeecHHHHHHHHhCc
Confidence 9999999999999999874
No 116
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=94.61 E-value=0.53 Score=43.72 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=35.3
Q ss_pred cchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHH-----cCCeEEEEcccEEEEeccC
Q psy11642 262 GLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWM-----CGGSIEWVPCSRIGHVYRS 316 (372)
Q Consensus 262 ~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~-----~G~~i~~~p~~~v~H~~~~ 316 (372)
-+|+|.|++|..|-...+.|-.|--=+||+++.... ...++...-.++|.|+...
T Consensus 234 mGmAfNRs~W~kI~~ca~~FC~yDDYNWDwSL~~ls~~cl~~~~kvL~~~~PRV~HiGdC 293 (356)
T PF05060_consen 234 MGMAFNRSTWNKIKSCADEFCTYDDYNWDWSLQHLSQRCLPSPLKVLVPKGPRVFHIGDC 293 (356)
T ss_pred ceeEecHHHHHHHHHHHHHhCCCCCCCchHHHHHHHhhccCCccEEEEEccCcEEEcccc
Confidence 468999999999986555444321113555554332 2566666677899998654
No 117
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.51 E-value=0.45 Score=39.88 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC-CCcchHHHHHhhhhhcc--CcEEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKESR--GEVIV 172 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~-~n~G~~~a~n~g~~~a~--gd~i~ 172 (372)
..+..+++.+..... . +|+||-+... . .+...... ..+.++..+ ...|...+...|++.+. .++++
T Consensus 27 ~li~~~i~~l~~~~~--~--~i~vv~~~~~-~----~~~~~~~~--~~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~vl 95 (186)
T cd04182 27 PLLRHALDAALAAGL--S--RVIVVLGAEA-D----AVRAALAG--LPVVVVINPDWEEGMSSSLAAGLEALPADADAVL 95 (186)
T ss_pred eHHHHHHHHHHhCCC--C--cEEEECCCcH-H----HHHHHhcC--CCeEEEeCCChhhCHHHHHHHHHHhccccCCEEE
Confidence 688999998876521 1 6666643221 1 12222222 235555543 33688889999999886 79999
Q ss_pred EecCCc-ccCCCChHHHHHhhhcCCCEEEeeee
Q psy11642 173 FLDAHC-EVGLNWLPPLLAPIYSDRKIMTVPVI 204 (372)
Q Consensus 173 flD~D~-~~~~~~L~~ll~~~~~~~~~~v~p~i 204 (372)
++.+|. .++++.++.+++.+..++..+++|..
T Consensus 96 v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~~ 128 (186)
T cd04182 96 ILLADQPLVTAETLRALIDAFREDGAGIVAPVY 128 (186)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Confidence 999999 46789999999988766666666643
No 118
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=94.43 E-value=0.84 Score=39.31 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=64.5
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cCCcEEEEecCCCcchHHHHHhhhh
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~~~v~~i~~~~n~G~~~a~n~g~~ 164 (372)
+|.-+. ..|..+|+++.+.... +|+||-+...+ .+.++... ++..+.++..+...|.+.+...++.
T Consensus 24 l~v~g~--pli~~~l~~l~~~g~~----~i~vv~~~~~~-----~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~ 92 (217)
T cd04181 24 LPIAGK--PILEYIIERLARAGID----EIILVVGYLGE-----QIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAED 92 (217)
T ss_pred cEECCe--eHHHHHHHHHHHCCCC----EEEEEeccCHH-----HHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhh
Confidence 344453 5889999998775422 66666554322 23333322 2335666766666888999999988
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhcCCCE
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~ 198 (372)
....+.++++++|.....+ +..+++.+......
T Consensus 93 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 125 (217)
T cd04181 93 FLGDDDFLVVNGDVLTDLD-LSELLRFHREKGAD 125 (217)
T ss_pred hcCCCCEEEEECCeecCcC-HHHHHHHHHhcCCC
Confidence 8777899999999987666 56666665554443
No 119
>PLN02248 cellulose synthase-like protein
Probab=94.41 E-value=0.23 Score=52.34 Aligned_cols=48 Identities=23% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCCCceEEEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCc
Q psy11642 79 LDLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSK 126 (372)
Q Consensus 79 ~~~p~vSVIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d 126 (372)
.++|.|.|.|+|-+ |+.-...+|+-||++-.||....-+.|-|||.+.
T Consensus 364 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~ 414 (1135)
T PLN02248 364 SDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGAL 414 (1135)
T ss_pred ccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchH
Confidence 46999999999955 4445788899999999999888899999999653
No 120
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=94.28 E-value=0.43 Score=40.18 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=68.0
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC-CcchHHHHHhhhh-h
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAK-E 165 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~-n~G~~~a~n~g~~-~ 165 (372)
++..+ . ..|..+++.+.+... . +|+||-+...+. .++.+... ..+.++.... ..|...+...|++ .
T Consensus 20 l~~~g-~-pll~~~i~~l~~~~~-~---~iivv~~~~~~~----~~~~~~~~--~~v~~v~~~~~~~g~~~si~~~l~~~ 87 (188)
T TIGR03310 20 LPYKG-K-TILEHVVDNALRLFF-D---EVILVLGHEADE----LVALLANH--SNITLVHNPQYAEGQSSSIKLGLELP 87 (188)
T ss_pred cccCC-e-eHHHHHHHHHHHcCC-C---cEEEEeCCcHHH----HHHHhccC--CCeEEEECcChhcCHHHHHHHHhcCC
Confidence 34444 4 688999988876432 1 566654332211 33333332 2466666542 2577788888887 4
Q ss_pred ccCcEEEEecCCcc-cCCCChHHHHHhhhcCCCEEEeeee
Q psy11642 166 SRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVI 204 (372)
Q Consensus 166 a~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~i 204 (372)
...+.++++++|.. +.++.++.+++.+...+..+++|..
T Consensus 88 ~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 127 (188)
T TIGR03310 88 VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPLY 127 (188)
T ss_pred CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEeec
Confidence 56789999999995 5789999999987766666666543
No 121
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=94.11 E-value=0.68 Score=40.37 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=68.2
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
++|.-+. ..|..+|+++.+... .+|+||-.. ..+ .+.++...+ .+.++..+...|.+.+...|+...
T Consensus 20 l~~v~gk--pli~~~i~~l~~~~i----~~i~iv~~~-~~~----~i~~~~~~~--~~~~~~~~~~~g~~~ai~~a~~~~ 86 (229)
T cd02540 20 LHPLAGK--PMLEHVLDAARALGP----DRIVVVVGH-GAE----QVKKALANP--NVEFVLQEEQLGTGHAVKQALPAL 86 (229)
T ss_pred cceeCCc--cHHHHHHHHHHhCCC----CeEEEEECC-CHH----HHHHHhCCC--CcEEEECCCCCCCHHHHHHHHHhh
Confidence 4455453 589999999876432 165555432 121 344444432 466777666788888888888876
Q ss_pred c--CcEEEEecCCc-ccCCCChHHHHHhhhcCCCEEEe
Q psy11642 167 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMTV 201 (372)
Q Consensus 167 ~--gd~i~flD~D~-~~~~~~L~~ll~~~~~~~~~~v~ 201 (372)
. .+.++++++|. .+.+..+..+++.+.+.+..+++
T Consensus 87 ~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~ 124 (229)
T cd02540 87 KDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTV 124 (229)
T ss_pred ccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEE
Confidence 5 68999999999 45778999999888765444433
No 122
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=94.10 E-value=3.4 Score=36.30 Aligned_cols=94 Identities=12% Similarity=0.240 Sum_probs=57.0
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC--CCcchHHHHHhhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--EREGLIRTRSRGAK 164 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~--~n~G~~~a~n~g~~ 164 (372)
+++..+. ..|..+|+.+.+.... .+|+|+-+ .+ .+.++...+. +.++.+. ...|.+... .++.
T Consensus 20 l~~i~gk--pll~~~l~~l~~~~~i---~~ivvv~~---~~----~i~~~~~~~~--~~~~~~~~~~~~gt~~~~-~~~~ 84 (239)
T cd02517 20 LADIAGK--PMIQHVYERAKKAKGL---DEVVVATD---DE----RIADAVESFG--GKVVMTSPDHPSGTDRIA-EVAE 84 (239)
T ss_pred CcccCCc--CHHHHHHHHHHhCCCC---CEEEEECC---cH----HHHHHHHHcC--CEEEEcCcccCchhHHHH-HHHH
Confidence 3344453 5889999988765211 26777633 12 3444444433 4554432 234555433 3444
Q ss_pred hccC--cEEEEecCCc-ccCCCChHHHHHhhhcC
Q psy11642 165 ESRG--EVIVFLDAHC-EVGLNWLPPLLAPIYSD 195 (372)
Q Consensus 165 ~a~g--d~i~flD~D~-~~~~~~L~~ll~~~~~~ 195 (372)
.... +.++++++|. .+.+..|..+++.+..+
T Consensus 85 ~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 85 KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 4444 8899999999 67889999999887655
No 123
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=94.09 E-value=2 Score=37.19 Aligned_cols=99 Identities=9% Similarity=0.197 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC----CCcchHHHHHhhhhhcc----
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT----EREGLIRTRSRGAKESR---- 167 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~----~n~G~~~a~n~g~~~a~---- 167 (372)
..|..+|+.+.+..... +|+|+-| ++ .+.+....+...+.+++.+ ...|...+...|++...
T Consensus 27 pll~~~l~~l~~~~~~~---~IvV~~~---~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 96 (223)
T cd02513 27 PLIAWTIEAALESKLFD---RVVVSTD---DE----EIAEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEELGR 96 (223)
T ss_pred cHHHHHHHHHHhCCCCC---EEEEECC---cH----HHHHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 58899998887643222 5666532 22 2223333333212333332 12355666667776543
Q ss_pred -CcEEEEecCCcc-cCCCChHHHHHhhhcCCCEEEeeee
Q psy11642 168 -GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVI 204 (372)
Q Consensus 168 -gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~i 204 (372)
.++++++++|.. +.+..++.+++.+.......+.+..
T Consensus 97 ~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 97 DFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 389999999996 5779999999998765444555544
No 124
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=93.85 E-value=2 Score=36.46 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC-CcchHHHHHhhhhhccCc--EEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRGE--VIV 172 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~-n~G~~~a~n~g~~~a~gd--~i~ 172 (372)
..+..+++-+++.... +||||--.- ..+ ........ ..++++.++. ..|.+.....|++++.++ .++
T Consensus 32 plv~~~~~~a~~a~~~----~vivV~g~~---~~~-~~~a~~~~--~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~ 101 (199)
T COG2068 32 PLVRASAETALSAGLD----RVIVVTGHR---VAE-AVEALLAQ--LGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVV 101 (199)
T ss_pred cHHHHHHHHHHhcCCC----eEEEEeCcc---hhh-HHHhhhcc--CCeEEEeCcchhhhHhHHHHHHHHhcccCCCeEE
Confidence 4777778777654322 788887544 111 33344333 4688887754 589999999999999765 999
Q ss_pred EecCCcc-cCCCChHHHHHhhhcCCCEEEeeeeeccc
Q psy11642 173 FLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDGID 208 (372)
Q Consensus 173 flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~i~~~~ 208 (372)
++-+|.- +.++-+.++++.+.... .++.|......
T Consensus 102 ~~lgDmP~V~~~t~~rl~~~~~~~~-~~v~p~~~g~r 137 (199)
T COG2068 102 LMLGDMPQVTPATVRRLIAAFRARG-AAVRPVYGGAR 137 (199)
T ss_pred EEeCCCCCCCHHHHHHHHHhccccC-ceeeeeccCCc
Confidence 9999996 79999999999998874 55666654433
No 125
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=93.76 E-value=1.7 Score=37.91 Aligned_cols=98 Identities=8% Similarity=0.153 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC----CCcchHHHHHhhhhhc----c
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT----EREGLIRTRSRGAKES----R 167 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~----~n~G~~~a~n~g~~~a----~ 167 (372)
..+..+|+.+++...-+ +|+|+-| ++ .+.+++++++..+.+.+.+ ...|...+...|++.. .
T Consensus 25 pLi~~ti~~a~~s~~~d---~IvVstd---~~----~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~ 94 (222)
T TIGR03584 25 PMIAYSIEAALNSGLFD---KVVVSTD---DE----EIAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQ 94 (222)
T ss_pred CHHHHHHHHHHhCCCCC---EEEEeCC---CH----HHHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCC
Confidence 68899999987654322 5655433 22 2334555554334344332 2356666777777654 3
Q ss_pred CcEEEEecCCccc-CCCChHHHHHhhhcCCCEEEeee
Q psy11642 168 GEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPV 203 (372)
Q Consensus 168 gd~i~flD~D~~~-~~~~L~~ll~~~~~~~~~~v~p~ 203 (372)
.|+++++++|..+ .++.++.+++.+.++....++++
T Consensus 95 ~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv 131 (222)
T TIGR03584 95 YDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSV 131 (222)
T ss_pred CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 6999999999965 67999999999887544444433
No 126
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=93.70 E-value=1 Score=38.18 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=65.1
Q ss_pred CCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC-CcchHHHHHhhhhhc---c
Q psy11642 92 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKES---R 167 (372)
Q Consensus 92 n~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~-n~G~~~a~n~g~~~a---~ 167 (372)
+.. ..|..+++.+++... .+|+||-+... +... .+.+.... ...+.++.++. ..|...+.-.|++++ .
T Consensus 24 ~g~-~ll~~~i~~~~~~~~----~~i~vv~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~ 95 (190)
T TIGR03202 24 GET-TLGSASLKTALSSRL----SKVIVVIGEKY-AHLS-WLDPYLLA-DERIMLVCCRDACEGQAHSLKCGLRKAEAMG 95 (190)
T ss_pred CCc-cHHHHHHHHHHhCCC----CcEEEEeCCcc-chhh-hhhHhhhc-CCCeEEEECCChhhhHHHHHHHHHHHhccCC
Confidence 444 688888877655322 26777764432 2222 22222111 12455554432 357788888888876 4
Q ss_pred CcEEEEecCCcc-cCCCChHHHHHhhhcCCCEEEeee
Q psy11642 168 GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPV 203 (372)
Q Consensus 168 gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~ 203 (372)
.++++++++|.- ++++.++.|++.+...+..++++.
T Consensus 96 ~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~~~ 132 (190)
T TIGR03202 96 ADAVVILLADQPFLTADVINALLALAKRRPDDYVAAS 132 (190)
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEEEe
Confidence 799999999996 577999999998876555555543
No 127
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=93.41 E-value=0.66 Score=38.87 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC-CCcchHHHHHhhhhhccCcEEEEe
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKESRGEVIVFL 174 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~-~n~G~~~a~n~g~~~a~gd~i~fl 174 (372)
..|..+++.+... . . +|+||-+..... + .. ..+.++.++ ...|...+...|++.+..++++++
T Consensus 27 ~ll~~~i~~l~~~-~--~--~iivv~~~~~~~--------~-~~--~~~~~v~~~~~~~G~~~si~~~l~~~~~~~vlv~ 90 (181)
T cd02503 27 PLLEHVLERLKPL-V--D--EVVISANRDQER--------Y-AL--LGVPVIPDEPPGKGPLAGILAALRAAPADWVLVL 90 (181)
T ss_pred EHHHHHHHHHHhh-c--C--EEEEECCCChHH--------H-hh--cCCcEeeCCCCCCCCHHHHHHHHHhcCCCeEEEE
Confidence 6888888887653 1 1 677775433211 1 11 245666654 357888999999998889999999
Q ss_pred cCCcc-cCCCChHHHHHhhhcCCCEEEee
Q psy11642 175 DAHCE-VGLNWLPPLLAPIYSDRKIMTVP 202 (372)
Q Consensus 175 D~D~~-~~~~~L~~ll~~~~~~~~~~v~p 202 (372)
.+|.. ++++.++.+++.+ ..+..+++|
T Consensus 91 ~~D~P~i~~~~i~~l~~~~-~~~~~~~~~ 118 (181)
T cd02503 91 ACDMPFLPPELLERLLAAA-EEGADAVVP 118 (181)
T ss_pred eCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence 99995 5889999999987 444444444
No 128
>KOG1022|consensus
Probab=93.40 E-value=0.52 Score=45.43 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=78.8
Q ss_pred CCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHH
Q psy11642 79 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 158 (372)
Q Consensus 79 ~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a 158 (372)
..+-.++.||-|||+- +.|...|...... |. +.+|+||=|.-......+.++... ...+++..+.+|. -..
T Consensus 440 ~~~qgFTlim~TYdR~-d~L~k~v~~ys~v--Ps-L~kIlVVWNnq~k~PP~es~~~~~---~VPlr~r~qkeNs--LnN 510 (691)
T KOG1022|consen 440 GHSQGFTLIMLTYDRV-DLLKKLVKHYSRV--PS-LKKILVVWNNQGKNPPPESLEPDI---AVPLRFRQQKENS--LNN 510 (691)
T ss_pred CcccceeeeeehHHHH-HHHHHHHHHHhhC--CC-cceEEEEecCCCCCCChhhccccC---CccEEEEehhhhh--hhc
Confidence 3445689999999988 8888888776543 23 348888877411111111222222 2356776665543 334
Q ss_pred HHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe--eee
Q psy11642 159 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV--PVI 204 (372)
Q Consensus 159 ~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~--p~i 204 (372)
|-.-......+-|+-+|+|.+++-+-|+--.+-.++.|+..|+ |.+
T Consensus 511 RF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVGF~pR~ 558 (691)
T KOG1022|consen 511 RFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVGFVPRF 558 (691)
T ss_pred ccccCcccccceeEEecCceeeecchhHHHHHHHHhCccceeccCcce
Confidence 4445566789999999999999999999999999998887766 544
No 129
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=93.24 E-value=5.3 Score=34.90 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=60.0
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cCCcEEEEecCCCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
.+|.-+. ..|..+|+++.+... .+|+||-.. ..+ .++++... ++..+.++......|.+.+...|.
T Consensus 25 l~~i~g~--~li~~~l~~l~~~~~----~~i~vv~~~-~~~----~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~ 93 (236)
T cd04189 25 LIPVAGK--PIIQYAIEDLREAGI----EDIGIVVGP-TGE----EIKEALGDGSRFGVRITYILQEEPLGLAHAVLAAR 93 (236)
T ss_pred eeEECCc--chHHHHHHHHHHCCC----CEEEEEcCC-CHH----HHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHH
Confidence 4444454 588899988876532 267666554 222 33333322 233566666666678888888888
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
.....+-++++.+|..+..+ +..+++.+.....
T Consensus 94 ~~i~~~~~li~~~D~~~~~~-~~~~~~~~~~~~~ 126 (236)
T cd04189 94 DFLGDEPFVVYLGDNLIQEG-ISPLVRDFLEEDA 126 (236)
T ss_pred HhcCCCCEEEEECCeecCcC-HHHHHHHHHhcCC
Confidence 87653334557889887665 5556666554443
No 130
>PLN02190 cellulose synthase-like protein
Probab=92.96 E-value=0.24 Score=50.31 Aligned_cols=56 Identities=20% Similarity=0.099 Sum_probs=48.8
Q ss_pred CCCceEEEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHH
Q psy11642 80 DLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED 135 (372)
Q Consensus 80 ~~p~vSVIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~ 135 (372)
++|.|.|.|+|+| |+...+.+|+.|+++-.||....-+.|-|||...=|.....|.
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EA 149 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEA 149 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHH
Confidence 5899999999999 8878899999999999999887889999999998777744443
No 131
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=92.95 E-value=1.6 Score=37.79 Aligned_cols=95 Identities=8% Similarity=0.050 Sum_probs=59.8
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH--cCCcEEEEecC-CCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR--FNGKVRLIRNT-EREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~--~~~~v~~i~~~-~n~G~~~a~n~g~ 163 (372)
.+|.-++ ..|...|.++.+.... +|+|+-... .+ .+.++... ++..+.+.... +..|.+++...++
T Consensus 24 llpi~g~--~li~~~l~~l~~~gi~----~i~iv~~~~-~~----~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~ 92 (221)
T cd06422 24 LVPVAGK--PLIDHALDRLAAAGIR----RIVVNTHHL-AD----QIEAHLGDSRFGLRITISDEPDELLETGGGIKKAL 92 (221)
T ss_pred eeeECCE--EHHHHHHHHHHHCCCC----EEEEEccCC-HH----HHHHHHhcccCCceEEEecCCCcccccHHHHHHHH
Confidence 4455554 5899999998876432 666665432 22 23333322 23344444443 4578888998888
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhh
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIY 193 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~ 193 (372)
.....+.++++++|..+..+... ++....
T Consensus 93 ~~~~~~~~lv~~~D~i~~~~~~~-~~~~~~ 121 (221)
T cd06422 93 PLLGDEPFLVVNGDILWDGDLAP-LLLLHA 121 (221)
T ss_pred HhcCCCCEEEEeCCeeeCCCHHH-HHHHHH
Confidence 87766889999999988776554 555544
No 132
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=92.81 E-value=6.4 Score=34.67 Aligned_cols=100 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhh--
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE-- 165 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~-- 165 (372)
+|.-+ . ..|..+|+.+.+... .+|+|+-+. + .+.++...++..+.+...+...|.+.+.......
T Consensus 22 l~i~G-k-pll~~~l~~l~~~~i----~~ivvv~~~---~----~i~~~~~~~~~~v~~~~~~~~~gt~~~~~~~~~~~~ 88 (245)
T PRK05450 22 ADIGG-K-PMIVRVYERASKAGA----DRVVVATDD---E----RIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKLGL 88 (245)
T ss_pred cccCC-c-CHHHHHHHHHHhcCC----CeEEEECCc---H----HHHHHHHHcCCEEEECCCcCCCchHHHHHHHHhcCC
Confidence 34444 4 588999998876421 267766531 2 2333444443233322233334544433322121
Q ss_pred ccCcEEEEecCCc-ccCCCChHHHHHhhhcCCCEEE
Q psy11642 166 SRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT 200 (372)
Q Consensus 166 a~gd~i~flD~D~-~~~~~~L~~ll~~~~~~~~~~v 200 (372)
...+.++++++|. .++++.++.+++.+...+..++
T Consensus 89 ~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~ 124 (245)
T PRK05450 89 ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMA 124 (245)
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeE
Confidence 2468899999999 6788999999998866544333
No 133
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=92.77 E-value=1.8 Score=39.28 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=64.2
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC---CC------c
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---ER------E 153 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~---~n------~ 153 (372)
.++||....|-. ..+..+|.||+..+..+ +.+.|++|+.+.+..+ .+.+........|..+... .. .
T Consensus 2 ~~~iv~~~~~y~-~~~~~~i~Sil~n~~~~--~~fhii~d~~s~~~~~-~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~ 77 (280)
T cd06431 2 HVAIVCAGYNAS-RDVVTLVKSVLFYRRNP--LHFHLITDEIARRILA-TLFQTWMVPAVEVSFYNAEELKSRVSWIPNK 77 (280)
T ss_pred EEEEEEccCCcH-HHHHHHHHHHHHcCCCC--EEEEEEECCcCHHHHH-HHHHhccccCcEEEEEEhHHhhhhhccCccc
Confidence 367888885545 88999999999876433 4888999887766655 4444333333456655532 11 1
Q ss_pred chHH----HHHhhhhhc--cCcEEEEecCCcccCCCChHHHHHh
Q psy11642 154 GLIR----TRSRGAKES--RGEVIVFLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 154 G~~~----a~n~g~~~a--~gd~i~flD~D~~~~~~~L~~ll~~ 191 (372)
..+. .|-..-+.- .-+=++.||+|+++.. -|.+|.+.
T Consensus 78 ~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~-di~eL~~~ 120 (280)
T cd06431 78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFAT-DIAELWKI 120 (280)
T ss_pred chhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcC-CHHHHHHH
Confidence 1111 122232322 3688999999999854 46666655
No 134
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=92.41 E-value=9.6 Score=35.75 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=61.1
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cCCcEEEEecCCCcchHHHHHhhhh
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~~~v~~i~~~~n~G~~~a~n~g~~ 164 (372)
+|.-+. ..|..+|.++.+... .+|+|+-..-..+ .++++... ++..+.++..+...|.+.+.-.+..
T Consensus 25 ~pv~g~--pli~~~l~~l~~~gi----~~i~vv~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~ 94 (353)
T TIGR01208 25 IPVANK--PILQYAIEDLAEAGI----TDIGIVVGPVTGE----EIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARD 94 (353)
T ss_pred cEECCE--eHHHHHHHHHHHCCC----CEEEEEeCCCCHH----HHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHH
Confidence 344454 588899988876432 2666665431222 33333332 2334666666667889998888888
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
....+-++++.+|..+. .-+.++++.+.+...
T Consensus 95 ~l~~~~~li~~gD~~~~-~~l~~l~~~~~~~~~ 126 (353)
T TIGR01208 95 FLGDDDFVVYLGDNLIQ-DGISRFVKSFEEKDY 126 (353)
T ss_pred hcCCCCEEEEECCeecC-ccHHHHHHHHHhcCC
Confidence 76544455667888764 567888887765443
No 135
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=92.37 E-value=6.6 Score=33.81 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=60.3
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cCCcEEEEecCCCcchHHHHHhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
.+|..++ ..|..+|+.+...... +|+||-+... + .++++... +...+.++......|.+.+...+.
T Consensus 23 ll~~~g~--pli~~~l~~l~~~~~~----~iivv~~~~~-~----~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~ 91 (220)
T cd06426 23 MLKVGGK--PILETIIDRFIAQGFR----NFYISVNYLA-E----MIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLP 91 (220)
T ss_pred cCeECCc--chHHHHHHHHHHCCCc----EEEEECccCH-H----HHHHHHCCccccCccEEEEECCCCCcchHHHHHHH
Confidence 4455665 4899999988865332 5666543221 1 33444322 222455655545677777765444
Q ss_pred hhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe
Q psy11642 164 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 201 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~ 201 (372)
. ...+.++++.+|... ...+..+++.+......++.
T Consensus 92 ~-~~~~~~lv~~~D~i~-~~~~~~l~~~~~~~~~~~~~ 127 (220)
T cd06426 92 E-KPTDPFLVMNGDILT-NLNYEHLLDFHKENNADATV 127 (220)
T ss_pred h-hCCCCEEEEcCCEee-ccCHHHHHHHHHhcCCCEEE
Confidence 3 336778888999754 45678888887765544333
No 136
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=91.64 E-value=3.2 Score=36.77 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=64.7
Q ss_pred EEEEecC-CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCc--c--------
Q psy11642 86 VILVFHN-EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE--G-------- 154 (372)
Q Consensus 86 VIIp~yn-~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~--G-------- 154 (372)
|++.+-+ .-...+.-++.||+..+.... .+.|+.++-+++..+ .++.+.+.....+.++..+... .
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~--~~~il~~~is~~~~~-~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPL--RFHVLTNPLSDTFKA-ALDNLRKLYNFNYELIPVDILDSVDSEHLKRPI 79 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCe--EEEEEEccccHHHHH-HHHHHHhccCceEEEEeccccCcchhhhhcCcc
Confidence 4444433 233788889999998875544 888888886666555 7777655433345555432111 0
Q ss_pred --hHHHHHhhhhhcc-CcEEEEecCCcccCCCChHHHHHhhhcCCCEEE
Q psy11642 155 --LIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 200 (372)
Q Consensus 155 --~~~a~n~g~~~a~-gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v 200 (372)
.+-.|-...+... -+=|++||+|+++. +-|.++.+.-..+...++
T Consensus 80 ~~~~y~RL~i~~llp~~~kvlYLD~D~iv~-~di~~L~~~~l~~~~~aa 127 (246)
T cd00505 80 KIVTLTKLHLPNLVPDYDKILYVDADILVL-TDIDELWDTPLGGQELAA 127 (246)
T ss_pred ccceeHHHHHHHHhhccCeEEEEcCCeeec-cCHHHHhhccCCCCeEEE
Confidence 0112222222233 78899999999886 456666654333333333
No 137
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=91.59 E-value=3.2 Score=35.43 Aligned_cols=102 Identities=9% Similarity=0.069 Sum_probs=64.4
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cC-----CcEEEEec------CCC
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FN-----GKVRLIRN------TER 152 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~-----~~v~~i~~------~~n 152 (372)
++|..|.. ..|..+|+.+..... .+|+||-....+ .+.++... ++ ..+.++.. +..
T Consensus 23 llpv~g~~-pli~~~l~~l~~~gi----~~iivv~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (200)
T cd02508 23 AVPFGGRY-RLIDFPLSNMVNSGI----RNVGVLTQYKSR-----SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWY 92 (200)
T ss_pred eeEECCee-eeHHHHHHHHHHCCC----CEEEEEeCCChH-----HHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcc
Confidence 67777863 478888888876433 277777654432 22233322 11 12455532 345
Q ss_pred cchHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhcCCCEE
Q psy11642 153 EGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 199 (372)
Q Consensus 153 ~G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~ 199 (372)
.|.+.|...+..... .+.++++.+|.. .+.-+..+++.+.+.+..+
T Consensus 93 ~Gta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~~~ 141 (200)
T cd02508 93 RGTADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGADI 141 (200)
T ss_pred cCcHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCCCE
Confidence 888999888887653 578889999984 4567888888776655433
No 138
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=91.42 E-value=2.1 Score=37.55 Aligned_cols=103 Identities=16% Similarity=0.262 Sum_probs=62.5
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
+.+..+ . ..+..+++.+....... +|+|+-+..... + .+.++.... .+.++..+...+.+ ....+++..
T Consensus 18 ll~l~G-k-pli~~~i~~l~~~~~~~---~ivVv~~~~~~~--~-~i~~~~~~~--~v~~v~~~~~~~l~-~~~~~~~~~ 86 (233)
T cd02518 18 LKPLGG-K-PLLEHLLDRLKRSKLID---EIVIATSTNEED--D-PLEALAKKL--GVKVFRGSEEDVLG-RYYQAAEEY 86 (233)
T ss_pred ccccCC-c-cHHHHHHHHHHhCCCCC---eEEEECCCCccc--H-HHHHHHHHc--CCeEEECCchhHHH-HHHHHHHHc
Confidence 334434 4 68899998887643222 677776544311 1 333444432 46677665543333 223344445
Q ss_pred cCcEEEEecCCcc-cCCCChHHHHHhhhcCCCEEE
Q psy11642 167 RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMT 200 (372)
Q Consensus 167 ~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v 200 (372)
..++++++++|.- ++++.++.+++.+...+...+
T Consensus 87 ~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 87 NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 6799999999996 577999999998876554443
No 139
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=91.22 E-value=3.3 Score=37.44 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=57.2
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|..++. ..|..+|+.+....... +|+||-+... .. .++++.......+.++..+...|.++|...++...
T Consensus 26 ll~l~g~~-~li~~~l~~l~~~~~~~---~i~vvt~~~~---~~-~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~ 97 (274)
T cd02509 26 FLKLFGDK-SLLQQTLDRLKGLVPPD---RILVVTNEEY---RF-LVREQLPEGLPEENIILEPEGRNTAPAIALAALYL 97 (274)
T ss_pred EeEcCCCC-cHHHHHHHHHhcCCCCC---cEEEEechHH---HH-HHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHH
Confidence 45666655 79999999987653222 6777765321 11 34444433223577777777788888887777665
Q ss_pred c----CcEEEEecCCcccCC
Q psy11642 167 R----GEVIVFLDAHCEVGL 182 (372)
Q Consensus 167 ~----gd~i~flD~D~~~~~ 182 (372)
. .++++++.+|..+.+
T Consensus 98 ~~~~~~~~vlVl~~D~~i~~ 117 (274)
T cd02509 98 AKRDPDAVLLVLPSDHLIED 117 (274)
T ss_pred HhcCCCCeEEEecchhcccC
Confidence 3 578999999988753
No 140
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=90.95 E-value=2 Score=38.82 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=70.4
Q ss_pred eEEEE-EecC-CC-hhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC----------
Q psy11642 84 ASVIL-VFHN-EG-FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---------- 150 (372)
Q Consensus 84 vSVII-p~yn-~~-~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~---------- 150 (372)
++|++ |.|. +. +..|.+-|+....+-. . .+.+-+..+++...+ +|+.|.+. +.|.++.-+
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~--~--~~~~Y~~~~~~~~~~-vL~~Y~~~--g~v~~~~w~~~~~~~~~~~ 75 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLGV--D--HFYFYDNSSSPSVRK-VLKEYERS--GYVEVIPWPLRPKFPDFPS 75 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHhCC--C--EEEEEEccCCHHHHH-hHHHHhhc--CeEEEEEcccccccCCccc
Confidence 45555 4443 43 2377777766555422 2 677888888776655 99999876 467776654
Q ss_pred ---------CCcchHHHHHhhhhhcc--CcEEEEecCCcccCCC----ChHHHHHhhhcCCC
Q psy11642 151 ---------EREGLIRTRSRGAKESR--GEVIVFLDAHCEVGLN----WLPPLLAPIYSDRK 197 (372)
Q Consensus 151 ---------~n~G~~~a~n~g~~~a~--gd~i~flD~D~~~~~~----~L~~ll~~~~~~~~ 197 (372)
...|...|.|-++.... .+|++|+|-|..+-|. +.+.+...+...+.
T Consensus 76 ~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~ 137 (285)
T PF01697_consen 76 PFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPN 137 (285)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhccc
Confidence 01345677777777664 7899999999987553 46777777666544
No 141
>KOG4179|consensus
Probab=90.82 E-value=0.51 Score=44.04 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=73.2
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCC---cEEEEecCCC------
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG---KVRLIRNTER------ 152 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~---~v~~i~~~~n------ 152 (372)
|+|-+.+.++|-+ ..+.-.+..+.++.|+....-|.+-.|.+.|.+.+ .++++.+..+. .|++-...+.
T Consensus 3 ptvl~alL~rn~a-h~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie-~freWL~nv~~~y~~V~~e~~~e~~s~~d~ 80 (568)
T KOG4179|consen 3 PTVLCALLFRNFA-HSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIE-YFREWLENVGDLYHRVKWEPFIEPKSYPDE 80 (568)
T ss_pred ceeehHHHHHHHH-hhhhhccCChhccCCcccccceEEecCccccchHH-HHHHHHHhcCCccceeEEEecCCccccCcc
Confidence 5666777778877 77777777788889998878899988889988888 88888877542 3333222111
Q ss_pred cc-----------hHHHHHhhhhhcc---CcEEEEecCCcccC-CCChHHHHHh
Q psy11642 153 EG-----------LIRTRSRGAKESR---GEVIVFLDAHCEVG-LNWLPPLLAP 191 (372)
Q Consensus 153 ~G-----------~~~a~n~g~~~a~---gd~i~flD~D~~~~-~~~L~~ll~~ 191 (372)
.| +..-...++..|+ .||++|.|.|+.+. ++.|.-+...
T Consensus 81 ~~pk~W~~sr~q~lm~lKeea~~~~r~~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 81 HGPKHWPDSRFQHLMSLKEEALNWARSGWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred cCCccCchHHHHHHHHHHHHHHHHHHhhhcceeEEeehhheeeCCchHhHHHhc
Confidence 11 1122233333443 69999999999874 5777666654
No 142
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=90.75 E-value=2.1 Score=35.92 Aligned_cols=90 Identities=7% Similarity=0.113 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec--CCCcchHHHHHhhhhhccCcEEEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESRGEVIVF 173 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~--~~n~G~~~a~n~g~~~a~gd~i~f 173 (372)
..|..+++.+... ..+|+|+-+.... . +... ...+.++.. +...|...+...|++.+..+++++
T Consensus 28 pll~~~l~~l~~~-----~~~ivv~~~~~~~---~-----~~~~-~~~~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv 93 (186)
T TIGR02665 28 PLIEHVLARLRPQ-----VSDLAISANRNPE---R-----YAQA-GFGLPVVPDALADFPGPLAGILAGLRWAGTDWVLT 93 (186)
T ss_pred EHHHHHHHHHHhh-----CCEEEEEcCCCHH---H-----Hhhc-cCCCcEEecCCCCCCCCHHHHHHHHHhcCCCeEEE
Confidence 6888889888632 1267776543211 1 1111 113455554 234788888888998888899999
Q ss_pred ecCCc-ccCCCChHHHHHhhhcCCCEE
Q psy11642 174 LDAHC-EVGLNWLPPLLAPIYSDRKIM 199 (372)
Q Consensus 174 lD~D~-~~~~~~L~~ll~~~~~~~~~~ 199 (372)
+++|. .++++.++.+++.+...+..+
T Consensus 94 ~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 94 VPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred EecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 99999 568899999999886544333
No 143
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=90.64 E-value=2.6 Score=37.02 Aligned_cols=90 Identities=16% Similarity=0.257 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhccCcEEEEec
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 175 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~gd~i~flD 175 (372)
..|..+|+.+.+...- .+|+|+-+. + .+.++.+.++..+.+.......|.++ .-.++.....|.+++++
T Consensus 28 Pli~~~i~~l~~~~~~---~~ivv~t~~---~----~i~~~~~~~~~~v~~~~~~~~~g~~~-~~~a~~~~~~d~~lv~~ 96 (238)
T PRK13368 28 PMIQHVYERAAQAAGV---EEVYVATDD---Q----RIEDAVEAFGGKVVMTSDDHLSGTDR-LAEVMLKIEADIYINVQ 96 (238)
T ss_pred CHHHHHHHHHHhcCCC---CeEEEECCh---H----HHHHHHHHcCCeEEecCccCCCccHH-HHHHHHhCCCCEEEEEc
Confidence 5888999888775221 267776431 2 34445554443332222223344443 33345555568999999
Q ss_pred CCc-ccCCCChHHHHHhhhcCC
Q psy11642 176 AHC-EVGLNWLPPLLAPIYSDR 196 (372)
Q Consensus 176 ~D~-~~~~~~L~~ll~~~~~~~ 196 (372)
+|. .+.+..+..+++.+...+
T Consensus 97 ~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 97 GDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred CCcCcCCHHHHHHHHHHHHHCC
Confidence 999 567899999999886554
No 144
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=90.60 E-value=1.9 Score=37.18 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=62.5
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHH-HcCCcEEEEecCCCcchHHHHHhhhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ-RFNGKVRLIRNTEREGLIRTRSRGAKE 165 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~-~~~~~v~~i~~~~n~G~~~a~n~g~~~ 165 (372)
+++..+ . ..|..+++.+....... +|+||-+..... ....+.. .....+.++... .|...+...|++.
T Consensus 22 l~~i~G-k-pll~~~i~~l~~~~~~~---~ivVv~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~si~~al~~ 90 (218)
T cd02516 22 FLELGG-K-PVLEHTLEAFLAHPAID---EIVVVVPPDDID----LAKELAKYGLSKVVKIVEGG--ATRQDSVLNGLKA 90 (218)
T ss_pred eeEECC-e-EHHHHHHHHHhcCCCCC---EEEEEeChhHHH----HHHHHHhcccCCCeEEECCc--hHHHHHHHHHHHh
Confidence 444444 4 68999999987643222 677765432221 2222211 112235555432 3567778888887
Q ss_pred c---cCcEEEEecCCcc-cCCCChHHHHHhhhcCCC
Q psy11642 166 S---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 166 a---~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~ 197 (372)
. ..++++++++|.- +.++.++.+++.+.....
T Consensus 91 ~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (218)
T cd02516 91 LPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA 126 (218)
T ss_pred cccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc
Confidence 6 4789999999996 578999999998866554
No 145
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=90.57 E-value=2.2 Score=36.19 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhcc--CcEEEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVF 173 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~--gd~i~f 173 (372)
..|.+++..+..... . +|+||.+. +. +..+...+ .+.++.++. .|...+...|++++. ++.+++
T Consensus 31 ~ll~~~l~~l~~~~~-~---~vvvv~~~---~~----~~~~~~~~--~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv 96 (195)
T TIGR03552 31 AMLRDVITALRGAGA-G---AVLVVSPD---PA----LLEAARNL--GAPVLRDPG-PGLNNALNAALAEAREPGGAVLI 96 (195)
T ss_pred HHHHHHHHHHHhcCC-C---CEEEECCC---HH----HHHHHHhc--CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEE
Confidence 355666666654321 2 56666542 21 22233332 467776643 599999999988754 468999
Q ss_pred ecCCcc-cCCCChHHHHHhhhcCCCEEEeeee
Q psy11642 174 LDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVI 204 (372)
Q Consensus 174 lD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~i 204 (372)
+-+|+- +.++.++.+++.+.. ...+++|..
T Consensus 97 ~~~D~P~l~~~~i~~l~~~~~~-~~~vi~p~~ 127 (195)
T TIGR03552 97 LMADLPLLTPRELKRLLAAATE-GDVVIAPDR 127 (195)
T ss_pred EeCCCCCCCHHHHHHHHHhccc-CCEEEEecC
Confidence 999996 688999999998753 445566643
No 146
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=90.40 E-value=2.9 Score=36.19 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=63.8
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHc------CCcEEEEecCCCcchHHHHH
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF------NGKVRLIRNTEREGLIRTRS 160 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~------~~~v~~i~~~~n~G~~~a~n 160 (372)
.+|.-|. ..|..+|+.+.+... .+|+||-.....+ .++++.+.+ ...+.++...+..|.+.+..
T Consensus 25 Llpv~g~--pli~~~l~~l~~~g~----~~iivv~~~~~~~----~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~ 94 (214)
T cd04198 25 LLPVANK--PMIWYPLDWLEKAGF----EDVIVVVPEEEQA----EISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLR 94 (214)
T ss_pred cCEECCe--eHHHHHHHHHHHCCC----CeEEEEECHHHHH----HHHHHHHhcccccCcceeEEEecCCCCcChHHHHH
Confidence 4555565 488899999886422 2777776422111 345554432 11233443456789999998
Q ss_pred hhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe
Q psy11642 161 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 201 (372)
Q Consensus 161 ~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~ 201 (372)
.+......+ ++++.+|. +.+.-+..+++.+...+..+++
T Consensus 95 ~~~~~i~~d-~lv~~~D~-i~~~~l~~~l~~h~~~~~~~t~ 133 (214)
T cd04198 95 HIRKKIKKD-FLVLSCDL-ITDLPLIELVDLHRSHDASLTV 133 (214)
T ss_pred HHHhhcCCC-EEEEeCcc-ccccCHHHHHHHHhccCCcEEE
Confidence 888876555 67778885 4555678888877766554443
No 147
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=90.21 E-value=2.3 Score=37.28 Aligned_cols=94 Identities=13% Similarity=0.250 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC---CcEEEEecCCCcchHHHHHhhhhhc-cCcEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRNTEREGLIRTRSRGAKES-RGEVI 171 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~---~~v~~i~~~~n~G~~~a~n~g~~~a-~gd~i 171 (372)
..|..+|+.+.....-. +|+||-+... .. .++++...+. .++.++.. ..+...+.-.|++.. ..+++
T Consensus 31 pll~~~i~~~~~~~~~~---~ivVv~~~~~---~~-~~~~~~~~~~~~~~~~~~v~~--g~~r~~sv~~gl~~~~~~d~v 101 (230)
T PRK13385 31 PIFIHALRPFLADNRCS---KIIIVTQAQE---RK-HVQDLMKQLNVADQRVEVVKG--GTERQESVAAGLDRIGNEDVI 101 (230)
T ss_pred EHHHHHHHHHHcCCCCC---EEEEEeChhh---HH-HHHHHHHhcCcCCCceEEcCC--CchHHHHHHHHHHhccCCCeE
Confidence 68999999887643222 6666654322 12 3333433332 13555532 234456677777665 35789
Q ss_pred EEecCCcc-cCCCChHHHHHhhhcCCCE
Q psy11642 172 VFLDAHCE-VGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 172 ~flD~D~~-~~~~~L~~ll~~~~~~~~~ 198 (372)
+++|+|.- +.++.++.+++.+......
T Consensus 102 li~~~d~P~i~~~~i~~li~~~~~~~~~ 129 (230)
T PRK13385 102 LVHDGARPFLTQDIIDRLLEGVAKYGAA 129 (230)
T ss_pred EEccCCCCCCCHHHHHHHHHHHhhCCcE
Confidence 99999996 5779999999998765433
No 148
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=89.87 E-value=0.41 Score=43.72 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=26.3
Q ss_pred hHHHHHhhhhhccCcEEEEecCCcccCCCC
Q psy11642 155 LIRTRSRGAKESRGEVIVFLDAHCEVGLNW 184 (372)
Q Consensus 155 ~~~a~n~g~~~a~gd~i~flD~D~~~~~~~ 184 (372)
-.+.||.|.-.+..+||+++|+|+.+..+|
T Consensus 81 ~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~ 110 (346)
T PLN03180 81 DSACRCFGYLVSKKKYIFTIDDDCFVAKDP 110 (346)
T ss_pred cccchhhhheeecceEEEEECCCCCCCCCC
Confidence 356889999999999999999999998774
No 149
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=89.65 E-value=2.7 Score=35.96 Aligned_cols=88 Identities=11% Similarity=0.209 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC-CcchHHHHHhhhhhccCcE
Q psy11642 92 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRGEV 170 (372)
Q Consensus 92 n~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~-n~G~~~a~n~g~~~a~gd~ 170 (372)
+.. ..|..+++.+... . . +|+||-... + ..+.+. ...+.++.+.. ..|...+...|++....++
T Consensus 31 ~g~-~ll~~~i~~l~~~-~--~--~ivvv~~~~--~----~~~~~~---~~~~~~i~~~~~~~G~~~si~~~l~~~~~~~ 95 (200)
T PRK02726 31 QGV-PLLQRVARIAAAC-A--D--EVYIITPWP--E----RYQSLL---PPGCHWLREPPPSQGPLVAFAQGLPQIKTEW 95 (200)
T ss_pred CCE-eHHHHHHHHHHhh-C--C--EEEEECCCH--H----HHHhhc---cCCCeEecCCCCCCChHHHHHHHHHhCCCCc
Confidence 444 6888999888643 1 1 677764321 1 222221 12467776543 3788899999999888899
Q ss_pred EEEecCCcc-cCCCChHHHHHhhhc
Q psy11642 171 IVFLDAHCE-VGLNWLPPLLAPIYS 194 (372)
Q Consensus 171 i~flD~D~~-~~~~~L~~ll~~~~~ 194 (372)
++++++|.- ++++.++.|++.+..
T Consensus 96 vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 96 VLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 999999996 477999999998764
No 150
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=89.39 E-value=2.5 Score=41.08 Aligned_cols=98 Identities=9% Similarity=0.062 Sum_probs=61.9
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
++|.-+. ..|..+|+.+...... +|+|+-.. ..+ .+.++...+...+.++......|.+.+...++...
T Consensus 27 ll~v~gk--pli~~~l~~l~~~gi~----~ivvv~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l 95 (446)
T PRK14353 27 LHPVAGR--PMLAHVLAAAASLGPS----RVAVVVGP-GAE----AVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREAL 95 (446)
T ss_pred cCEECCc--hHHHHHHHHHHhCCCC----cEEEEECC-CHH----HHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHH
Confidence 3455453 5899999988765432 55555432 222 33444443322345555556678788777777665
Q ss_pred c--CcEEEEecCCc-ccCCCChHHHHHhhhcC
Q psy11642 167 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSD 195 (372)
Q Consensus 167 ~--gd~i~flD~D~-~~~~~~L~~ll~~~~~~ 195 (372)
. .+.++++++|. .+.++.++.+++.+...
T Consensus 96 ~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~ 127 (446)
T PRK14353 96 AGGYGDVLVLYGDTPLITAETLARLRERLADG 127 (446)
T ss_pred hccCCCEEEEeCCcccCCHHHHHHHHHhHhcC
Confidence 2 57788899998 67888999999866543
No 151
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=88.78 E-value=4.9 Score=39.62 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=64.9
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|..+. ..|..+|+++.+.... +++|+-.... + .+.++.......+.++..+...|.+.+.-.|+...
T Consensus 26 llpi~gk--pli~~~l~~l~~~g~~----~iivvv~~~~-~----~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l 94 (482)
T PRK14352 26 LHTLAGR--SMLGHVLHAAAGLAPQ----HLVVVVGHDR-E----RVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEAL 94 (482)
T ss_pred eceeCCc--cHHHHHHHHHHhcCCC----cEEEEECCCH-H----HHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHh
Confidence 4455564 4899999998865432 5555443221 2 23333333222455665666678888888888775
Q ss_pred c---CcEEEEecCCc-ccCCCChHHHHHhhhcCCCE
Q psy11642 167 R---GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 167 ~---gd~i~flD~D~-~~~~~~L~~ll~~~~~~~~~ 198 (372)
. .+.++++++|. .+.+..++.|++.+......
T Consensus 95 ~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~ 130 (482)
T PRK14352 95 PADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNA 130 (482)
T ss_pred ccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 4 36889999998 46778899999987765544
No 152
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=88.66 E-value=2.5 Score=36.82 Aligned_cols=91 Identities=15% Similarity=0.314 Sum_probs=59.5
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC--CcchHHHHHhhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGLIRTRSRGAK 164 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~--n~G~~~a~n~g~~ 164 (372)
.+|.-+ . ..|..+|+++.+.... +|+||-.. ..+ .+.++.... ..+.++.++. ..|.+.+...+..
T Consensus 23 l~~~~g-~-~li~~~l~~l~~~gi~----~i~vv~~~-~~~----~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~ 90 (229)
T cd02523 23 LLEING-K-PLLERQIETLKEAGID----DIVIVTGY-KKE----QIEELLKKY-PNIKFVYNPDYAETNNIYSLYLARD 90 (229)
T ss_pred eeeECC-E-EHHHHHHHHHHHCCCc----eEEEEecc-CHH----HHHHHHhcc-CCeEEEeCcchhhhCcHHHHHHHHH
Confidence 344444 3 6899999988775332 66666543 222 334444332 3577776653 4788888888888
Q ss_pred hccCcEEEEecCCcccCCCChHHHHH
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLA 190 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~ 190 (372)
.. .+.++++++|..+.++.++.+++
T Consensus 91 ~~-~~~~lv~~~D~~~~~~~~~~~~~ 115 (229)
T cd02523 91 FL-DEDFLLLEGDVVFDPSILERLLS 115 (229)
T ss_pred Hc-CCCEEEEeCCEecCHHHHHHHHc
Confidence 77 57889999999887766666553
No 153
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=88.43 E-value=2.9 Score=40.91 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=66.5
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
++|..+. ..|..+|+++.+.... +++++-.... + .+.++.... ..+.++..++..|.+.+...++...
T Consensus 25 l~pi~g~--pli~~~l~~l~~~gi~----~iiiv~~~~~-~----~i~~~~~~~-~~i~~~~~~~~~Gt~~al~~a~~~l 92 (459)
T PRK14355 25 MHPLAGR--PMVSWPVAAAREAGAG----RIVLVVGHQA-E----KVREHFAGD-GDVSFALQEEQLGTGHAVACAAPAL 92 (459)
T ss_pred eceeCCc--cHHHHHHHHHHhcCCC----eEEEEECCCH-H----HHHHHhccC-CceEEEecCCCCCHHHHHHHHHHHh
Confidence 5566664 5888899988765322 5555543222 1 233333321 2577766667788888888888776
Q ss_pred c--CcEEEEecCCc-ccCCCChHHHHHhhhcCCCE
Q psy11642 167 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 167 ~--gd~i~flD~D~-~~~~~~L~~ll~~~~~~~~~ 198 (372)
. .+.++++++|. .+.+..++.+++.+......
T Consensus 93 ~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~ 127 (459)
T PRK14355 93 DGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAA 127 (459)
T ss_pred hccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCc
Confidence 4 47899999999 56788899999987665443
No 154
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=88.21 E-value=6.1 Score=36.21 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=62.8
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHH-------------------HHH--HcCCcEE
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED-------------------YIQ--RFNGKVR 145 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~-------------------~~~--~~~~~v~ 145 (372)
.+|.-+.+ .|...|+.+.+.... +|+|+-.... +...+.+.. +.. .+..++.
T Consensus 28 LvpV~gkP--iI~~vl~~l~~~Gi~----~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (297)
T TIGR01105 28 MLPIVDKP--MIQYIVDEIVAAGIK----EIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIM 100 (297)
T ss_pred eeEECCEE--HHHHHHHHHHHCCCC----EEEEEecCCh-HHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEE
Confidence 56666654 888999998875432 6766665432 222212211 000 1123477
Q ss_pred EEecCCCcchHHHHHhhhhhccC-cEEEEecCCcccCC-------CChHHHHHhhhcCC
Q psy11642 146 LIRNTEREGLIRTRSRGAKESRG-EVIVFLDAHCEVGL-------NWLPPLLAPIYSDR 196 (372)
Q Consensus 146 ~i~~~~n~G~~~a~n~g~~~a~g-d~i~flD~D~~~~~-------~~L~~ll~~~~~~~ 196 (372)
++..++..|.++|.-.+...... +++++ .+|..+.+ -.+.+|++.+.+..
T Consensus 101 ~~~q~~~lGtg~Av~~a~~~l~~~~flvv-~gD~l~~~~~~~~~~~~l~~li~~~~~~~ 158 (297)
T TIGR01105 101 NVRQAQPLGLGHSILCARPVVGDNPFVVV-LPDIIIDDATADPLRYNLAAMIARFNETG 158 (297)
T ss_pred EeeCCCcCchHHHHHHHHHHhCCCCEEEE-ECCeeccccccccchhHHHHHHHHHHHhC
Confidence 77788889999999998887753 45544 48877654 26778888765433
No 155
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.08 E-value=7 Score=34.02 Aligned_cols=95 Identities=12% Similarity=0.139 Sum_probs=56.4
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEe-cCCCcchHHHHHhhhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR-NTEREGLIRTRSRGAKE 165 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~-~~~n~G~~~a~n~g~~~ 165 (372)
.+|..+. ..|..+|+++.+.... +++||-. ....... .+++.......++.++. .+...|.+.+...|...
T Consensus 23 ll~i~g~--pli~~~l~~l~~~g~~----~ivvv~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~g~~~~l~~a~~~ 94 (231)
T cd04183 23 LIEVDGK--PMIEWVIESLAKIFDS----RFIFICR-DEHNTKF-HLDESLKLLAPNATVVELDGETLGAACTVLLAADL 94 (231)
T ss_pred eeEECCE--EHHHHHHHhhhccCCc----eEEEEEC-hHHhhhh-hHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHHHhh
Confidence 3455564 5899999998775421 5666653 2211111 22222222122344333 34568888888888887
Q ss_pred cc-CcEEEEecCCcccCCCChHHHH
Q psy11642 166 SR-GEVIVFLDAHCEVGLNWLPPLL 189 (372)
Q Consensus 166 a~-gd~i~flD~D~~~~~~~L~~ll 189 (372)
.. .+.++++++|..+..+....+.
T Consensus 95 l~~~~~~lv~~~D~i~~~~~~~~~~ 119 (231)
T cd04183 95 IDNDDPLLIFNCDQIVESDLLAFLA 119 (231)
T ss_pred cCCCCCEEEEecceeeccCHHHHHH
Confidence 64 4778889999988777554443
No 156
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=87.81 E-value=5.6 Score=35.49 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc--cCcEEEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES--RGEVIVF 173 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a--~gd~i~f 173 (372)
..|..+|+.+.+..... +|+||-.....+ .++...+.++..+.++ ....+.....-.|++.. ..++|++
T Consensus 53 pll~~tl~~~~~~~~i~---~IvVV~~~~~~~----~~~~~~~~~~~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~Vli 123 (252)
T PLN02728 53 PIALYSLYTFARMPEVK---EIVVVCDPSYRD----VFEEAVENIDVPLKFA--LPGKERQDSVFNGLQEVDANSELVCI 123 (252)
T ss_pred EHHHHHHHHHHhCCCCC---eEEEEeCHHHHH----HHHHHHHhcCCceEEc--CCCCchHHHHHHHHHhccCCCCEEEE
Confidence 57888888877632222 777776432211 3333434443344443 22334455566677655 3578999
Q ss_pred ecCCcc-cCCCChHHHHHhhhcCCC
Q psy11642 174 LDAHCE-VGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 174 lD~D~~-~~~~~L~~ll~~~~~~~~ 197 (372)
.|++.- ++++.++.+++.+.....
T Consensus 124 hDaarP~vs~~~i~~li~~~~~~ga 148 (252)
T PLN02728 124 HDSARPLVTSADIEKVLKDAAVHGA 148 (252)
T ss_pred ecCcCCCCCHHHHHHHHHHHhhCCe
Confidence 998774 577999999998876653
No 157
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.66 E-value=3 Score=40.58 Aligned_cols=101 Identities=11% Similarity=0.110 Sum_probs=64.3
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|.-+ . ..|..+|+++.+.... +++||-.... + .++++..... .++++..+...|.+.+...+++..
T Consensus 23 ll~v~g-k-pli~~~l~~l~~~g~~----~iivvv~~~~-~----~i~~~~~~~~-~i~~v~~~~~~G~~~sv~~~~~~l 90 (450)
T PRK14360 23 LHPLGG-K-SLVERVLDSCEELKPD----RRLVIVGHQA-E----EVEQSLAHLP-GLEFVEQQPQLGTGHAVQQLLPVL 90 (450)
T ss_pred cCEECC-h-hHHHHHHHHHHhCCCC----eEEEEECCCH-H----HHHHHhcccC-CeEEEEeCCcCCcHHHHHHHHHHh
Confidence 344444 3 6899999998765432 4544443221 1 3334443322 577776666678777777777665
Q ss_pred c--CcEEEEecCCc-ccCCCChHHHHHhhhcCCCEE
Q psy11642 167 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIM 199 (372)
Q Consensus 167 ~--gd~i~flD~D~-~~~~~~L~~ll~~~~~~~~~~ 199 (372)
. .+.++++++|. .+.+..++.+++.+.+....+
T Consensus 91 ~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~ 126 (450)
T PRK14360 91 KGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADV 126 (450)
T ss_pred hccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcE
Confidence 3 45678899998 457788999999887665443
No 158
>PLN03153 hypothetical protein; Provisional
Probab=87.14 E-value=2 Score=41.90 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=31.5
Q ss_pred cccccchhccHHHHHHhcC-CCCCCc----ccchhhHHHHHHHHHcCCeEEEEc
Q psy11642 258 THAGGLFAMDRAFFLELGG-YDPGLL----VWGGENFELSFKIWMCGGSIEWVP 306 (372)
Q Consensus 258 ~~~G~~~~irr~~~~~iGg-fd~~~~----~~g~ED~dl~~r~~~~G~~i~~~p 306 (372)
+..|+.+++++.+.+.+-. +++-.. .| ++|..|..=+...|..+...|
T Consensus 261 A~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~-~gD~rL~~CL~elGV~LT~~~ 313 (537)
T PLN03153 261 AFGGGGIAISYPLAEALSRILDDCLDRYPKLY-GSDDRLHACITELGVPLSREP 313 (537)
T ss_pred ccCCceEEEcHHHHHHHHHHhhhhhhhcccCC-CcHHHHHHHHHHcCCCceecC
Confidence 3467789999977777654 333221 24 577788887788887775543
No 159
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=87.00 E-value=7.8 Score=34.43 Aligned_cols=45 Identities=13% Similarity=-0.052 Sum_probs=33.7
Q ss_pred CcchHHHHHhhhhhccC-cEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 152 REGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 152 n~G~~~a~n~g~~~a~g-d~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
..|.++|.-.+.....+ +.++++++|..+..+. ..|++.......
T Consensus 101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~ 146 (253)
T cd02524 101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGK 146 (253)
T ss_pred ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCC
Confidence 35567777777777765 7899999999887666 888887665444
No 160
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=86.91 E-value=6.5 Score=38.76 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=66.4
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|.-+. ..|..+|+.+.+.... +|+||-.... + .++++... ..+.++..+...|.+.+.-.|+...
T Consensus 29 llpi~gk--pli~~~l~~l~~~gi~----~ivvv~~~~~-~----~i~~~~~~--~~i~~v~~~~~~Gt~~al~~~~~~l 95 (481)
T PRK14358 29 LHPVAGR--PMVAWAVKAARDLGAR----KIVVVTGHGA-E----QVEAALQG--SGVAFARQEQQLGTGDAFLSGASAL 95 (481)
T ss_pred ecEECCe--eHHHHHHHHHHhCCCC----eEEEEeCCCH-H----HHHHHhcc--CCcEEecCCCcCCcHHHHHHHHHHh
Confidence 4455554 5899999988765322 6766654321 2 34444433 3577887777788888888887765
Q ss_pred c--CcEEEEecCCc-ccCCCChHHHHHhhhcCCCEE
Q psy11642 167 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIM 199 (372)
Q Consensus 167 ~--gd~i~flD~D~-~~~~~~L~~ll~~~~~~~~~~ 199 (372)
. .+-++++++|. .+.+..++.|++...+....+
T Consensus 96 ~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ 131 (481)
T PRK14358 96 TEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAM 131 (481)
T ss_pred hCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeE
Confidence 3 22367789998 567788999998887665544
No 161
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=86.76 E-value=8.2 Score=34.12 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=60.9
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC-----------cc
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-----------EG 154 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n-----------~G 154 (372)
|++++=+.-...+..++.|++..+.. ....++|+.++.++...+ .++++.......|+++..... ..
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~-~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 80 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKK-KLKELLKKYNSSIEFIKIDNDDFKFFPATTDHIS 80 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHH-HHHHHHHhcCCeEEEEEcCHHHHhcCCccccccc
Confidence 44444333336788889999987653 234788888877766655 787777654445666543211 00
Q ss_pred -hHHHHHhhhhhc-cCcEEEEecCCcccCCCChHHHHH
Q psy11642 155 -LIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLA 190 (372)
Q Consensus 155 -~~~a~n~g~~~a-~gd~i~flD~D~~~~~~~L~~ll~ 190 (372)
.+.+|-.....- ..+-+++||+|+.+.. -+..+.+
T Consensus 81 ~~~y~rl~l~~ll~~~~rvlylD~D~lv~~-di~~L~~ 117 (248)
T cd04194 81 YATYYRLLIPDLLPDYDKVLYLDADIIVLG-DLSELFD 117 (248)
T ss_pred HHHHHHHHHHHHhcccCEEEEEeCCEEecC-CHHHHhc
Confidence 122233333333 3788999999998865 4555554
No 162
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=86.71 E-value=16 Score=34.14 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=69.9
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC----------
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE---------- 151 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~---------- 151 (372)
..+.|+..+=+.-...+.-+|.||+..... ..+.+.|++|+-+++..+ .++++.+.++..+.++....
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~-~l~~l~~~~~~~i~~~~id~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQ-RFSALAKQYNTRINIYLINCERLKSLPSTK 101 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHH-HHHHHHHhcCCeEEEEEeCHHHHhCCcccC
Confidence 457777776544457888899999865432 235889999888877776 88888887766666654321
Q ss_pred Ccch-HHHHHhhhhhc--cCcEEEEecCCcccCCCChHHHHHh
Q psy11642 152 REGL-IRTRSRGAKES--RGEVIVFLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 152 n~G~-~~a~n~g~~~a--~gd~i~flD~D~~~~~~~L~~ll~~ 191 (372)
+... +-.|-...+.- .-|-|+.||+|+++.. -|.+|...
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~-dl~~L~~~ 143 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKG-SIKELIDL 143 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecC-CHHHHHhc
Confidence 1111 12333333332 4789999999998865 56666654
No 163
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=86.31 E-value=8.4 Score=34.45 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=63.6
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHH------HHHHc--------------CCcEEE
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED------YIQRF--------------NGKVRL 146 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~------~~~~~--------------~~~v~~ 146 (372)
.+|.-+. ..|..+|+++.+.... +|+||-...... +.+.+.. ...+. +..+.+
T Consensus 25 llpv~gk--pli~~~l~~l~~~gi~----~i~iv~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (267)
T cd02541 25 MLPIVDK--PVIQYIVEEAVAAGIE----DIIIVTGRGKRA-IEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHY 97 (267)
T ss_pred eeEECCE--EHHHHHHHHHHHCCCC----EEEEEeCCchHH-HHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEE
Confidence 4566664 5899999998875332 566555432211 1111110 00010 224556
Q ss_pred EecCCCcchHHHHHhhhhhccCcEEEEecCCcccCCC--ChHHHHHhhhcCCC
Q psy11642 147 IRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN--WLPPLLAPIYSDRK 197 (372)
Q Consensus 147 i~~~~n~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~--~L~~ll~~~~~~~~ 197 (372)
+..+...|.+.+...++.....+-++++.+|..+... .+..+++.+.....
T Consensus 98 ~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 98 VRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred EEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 6666678999999999888765667777888877553 58999987765443
No 164
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=86.26 E-value=4.1 Score=34.69 Aligned_cols=92 Identities=8% Similarity=0.104 Sum_probs=64.0
Q ss_pred cCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCc-chHHHHHhhhhhccCc
Q psy11642 91 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE-GLIRTRSRGAKESRGE 169 (372)
Q Consensus 91 yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~-G~~~a~n~g~~~a~gd 169 (372)
.|.. ..+...++-+..|.. +++|.-+...+. +.. ..+.++...... |.-++.-.|++++.++
T Consensus 26 ~~g~-~lie~v~~~L~~~~~-----~vvi~~~~~~~~--------~~~---~g~~vv~D~~~~~GPL~Gi~~al~~~~~~ 88 (192)
T COG0746 26 LNGR-PLIEHVIDRLRPQVD-----VVVISANRNQGR--------YAE---FGLPVVPDELPGFGPLAGILAALRHFGTE 88 (192)
T ss_pred eCCe-EHHHHHHHHhcccCC-----EEEEeCCCchhh--------hhc---cCCceeecCCCCCCCHHHHHHHHHhCCCC
Confidence 4555 567777766666552 344443322211 221 136777766665 9999999999999999
Q ss_pred EEEEecCCcc-cCCCChHHHHHhhhcCCCEE
Q psy11642 170 VIVFLDAHCE-VGLNWLPPLLAPIYSDRKIM 199 (372)
Q Consensus 170 ~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~ 199 (372)
+++++=.|+- ++++.++.|++...+.+..+
T Consensus 89 ~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~ 119 (192)
T COG0746 89 WVLVLPCDMPFIPPELVERLLSAFKQTGAAI 119 (192)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhhcccCCcE
Confidence 9999999996 46799999999988777433
No 165
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=86.22 E-value=1.8 Score=38.59 Aligned_cols=108 Identities=18% Similarity=0.099 Sum_probs=53.1
Q ss_pred cCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe-eeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHHh
Q psy11642 167 RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAK 245 (372)
Q Consensus 167 ~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~-p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (372)
..+|++++|+|+.+...-|..+|..+.......++ +........ .. ....
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~----------~~--~~~~----------------- 136 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEI----------IH--RFNP----------------- 136 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------------------------
T ss_pred CceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCcccee----------ec--cccc-----------------
Confidence 46999999999999888888888887765544443 211100000 00 0000
Q ss_pred hccCCCCcccCc-cccccchhccHHHHHHhc------CCCCCCc-ccchhhHHHHHHHHH-cCCeEEEEc
Q psy11642 246 KRKYNSEPYKSP-THAGGLFAMDRAFFLELG------GYDPGLL-VWGGENFELSFKIWM-CGGSIEWVP 306 (372)
Q Consensus 246 ~~~~~~~~~~~~-~~~G~~~~irr~~~~~iG------gfd~~~~-~~g~ED~dl~~r~~~-~G~~i~~~p 306 (372)
......... +..|+.++++|.+++++. .+-.... ....||+.+++-+.. .|.++...|
T Consensus 137 ---~~~~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~ 203 (252)
T PF02434_consen 137 ---NKSKDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSP 203 (252)
T ss_dssp ------------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-T
T ss_pred ---cccCcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeech
Confidence 000000111 235678999999999982 2222111 112699999999988 887776654
No 166
>PLN02190 cellulose synthase-like protein
Probab=86.06 E-value=4 Score=41.81 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=42.5
Q ss_pred CcEEEEecCCCcc-----hHHHHHhhhhhc----cCcEEEEecCCccc-CCCChHHHHHhhhcC
Q psy11642 142 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYSD 195 (372)
Q Consensus 142 ~~v~~i~~~~n~G-----~~~a~n~g~~~a----~gd~i~flD~D~~~-~~~~L~~ll~~~~~~ 195 (372)
+.+.++..+++.| +++|+|+.++.+ .+++|+-+|.|..+ ++..+.+.+-.+.+.
T Consensus 252 P~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~ 315 (756)
T PLN02190 252 PHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQK 315 (756)
T ss_pred ceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCC
Confidence 3788888877766 899999988764 59999999999987 568887776666543
No 167
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=85.78 E-value=5.5 Score=38.74 Aligned_cols=97 Identities=11% Similarity=0.083 Sum_probs=64.2
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
++|.-++ ..|..+|+.+.+.... +++|+-.. ..+ .++++...+ .+.++..++..|.+.+...++...
T Consensus 22 l~~i~gk--pli~~~l~~l~~~g~~----~iiiv~~~-~~~----~i~~~~~~~--~i~~~~~~~~~G~~~ai~~a~~~l 88 (451)
T TIGR01173 22 LHPLAGK--PMLEHVIDAARALGPQ----KIHVVYGH-GAE----QVRKALANR--DVNWVLQAEQLGTGHAVLQALPFL 88 (451)
T ss_pred hceeCCc--cHHHHHHHHHHhCCCC----eEEEEECC-CHH----HHHHHhcCC--CcEEEEcCCCCchHHHHHHHHHhc
Confidence 4455554 5899999988765432 65555432 122 334444332 466666656678888888888776
Q ss_pred c-CcEEEEecCCc-ccCCCChHHHHHhhhcCC
Q psy11642 167 R-GEVIVFLDAHC-EVGLNWLPPLLAPIYSDR 196 (372)
Q Consensus 167 ~-gd~i~flD~D~-~~~~~~L~~ll~~~~~~~ 196 (372)
. .+.++++++|. .+.++.++.+++.+.+..
T Consensus 89 ~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~ 120 (451)
T TIGR01173 89 PDDGDVLVLYGDVPLISAETLERLLEAHRQNG 120 (451)
T ss_pred CCCCcEEEEECCcCCcCHHHHHHHHHHHhhCC
Confidence 4 47899999998 567889999998876543
No 168
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=85.56 E-value=2.9 Score=36.69 Aligned_cols=94 Identities=18% Similarity=0.065 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC--------------Cc-chHHHHH
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--------------RE-GLIRTRS 160 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~--------------n~-G~~~a~n 160 (372)
..+.-++.|++..+.......|++++++.+++..+ .++...........+..... .. ..+-++-
T Consensus 12 ~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl 90 (250)
T PF01501_consen 12 EGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFE-KLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRHFSPATFARL 90 (250)
T ss_dssp HHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHH-HHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTCGGGGGGGGG
T ss_pred HHHHHHHHHHHHhccccccceEEEecCCCCHHHHH-HHhhhcccccceeeeccchHHhhhhhhhcccccccccHHHHHHh
Confidence 56677789999888642334788888887766554 55544433222222222111 00 1122333
Q ss_pred hhhhh-ccCcEEEEecCCcccCCCChHHHHHh
Q psy11642 161 RGAKE-SRGEVIVFLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 161 ~g~~~-a~gd~i~flD~D~~~~~~~L~~ll~~ 191 (372)
...+. ...|-+++||+|+.+.. -|..+.+.
T Consensus 91 ~i~~ll~~~drilyLD~D~lv~~-dl~~lf~~ 121 (250)
T PF01501_consen 91 FIPDLLPDYDRILYLDADTLVLG-DLDELFDL 121 (250)
T ss_dssp GHHHHSTTSSEEEEE-TTEEESS--SHHHHC-
T ss_pred hhHHHHhhcCeEEEEcCCeeeec-Chhhhhcc
Confidence 34444 56799999999999854 45555553
No 169
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=85.47 E-value=11 Score=33.53 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=62.2
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHH------------------HHH-c-CCcEEE
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDY------------------IQR-F-NGKVRL 146 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~------------------~~~-~-~~~v~~ 146 (372)
.+|.-++ ..|..+|+++.+.... +|+||-.... +.+.+.+..- .+. . +..+.+
T Consensus 25 llpi~g~--pli~~~l~~l~~~gi~----~v~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (260)
T TIGR01099 25 MLPIVDK--PLIQYVVEEAVEAGIE----DILIVTGRGK-RAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFY 97 (260)
T ss_pred eEEECCE--EHHHHHHHHHHhCCCC----EEEEEeCCcH-HHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEE
Confidence 4566564 5888889888764322 6666654332 2222122100 000 0 113445
Q ss_pred EecCCCcchHHHHHhhhhhccCcEEEEecCCcccCCC--ChHHHHHhhhcCCCE
Q psy11642 147 IRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN--WLPPLLAPIYSDRKI 198 (372)
Q Consensus 147 i~~~~n~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~--~L~~ll~~~~~~~~~ 198 (372)
.......|.+.|...+......+-++++.+|..+... -+..+++.+.+.+..
T Consensus 98 ~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 98 VRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred EecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 5555678999998888887654567777777776543 788999987655543
No 170
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=85.42 E-value=2.4 Score=36.52 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=39.4
Q ss_pred EEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCc-------ch---HHHHHhhhhhcc-------CcEEEEecCCc
Q psy11642 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE-------GL---IRTRSRGAKESR-------GEVIVFLDAHC 178 (372)
Q Consensus 116 eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~-------G~---~~a~n~g~~~a~-------gd~i~flD~D~ 178 (372)
..|||+|+++... .+.++.++.+-..+.+..+... .. ...||.|++..+ .-+|.|.|+|.
T Consensus 12 ~WIVVEd~~~~~~---~v~~lL~~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFaDDdN 88 (207)
T PF03360_consen 12 HWIVVEDSEETTP---LVARLLRRSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYFADDDN 88 (207)
T ss_dssp EEEEEESSSS--H---HHHHHHHHHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE--TTS
T ss_pred EEEEEeCCCCCCH---HHHHHHHHcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEECCCCC
Confidence 8999999987543 3455555544444444433311 11 458899998765 45889999998
Q ss_pred ccCCCChHH
Q psy11642 179 EVGLNWLPP 187 (372)
Q Consensus 179 ~~~~~~L~~ 187 (372)
..+...+++
T Consensus 89 tYdl~LF~e 97 (207)
T PF03360_consen 89 TYDLRLFDE 97 (207)
T ss_dssp EE-HHHHHH
T ss_pred eeeHHHHHH
Confidence 877666665
No 171
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=85.31 E-value=16 Score=32.11 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhcc---CcEEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR---GEVIV 172 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~---gd~i~ 172 (372)
..+..+|+.++.... ..+|||+-....++....... ...+.++.++. +..........|++... .++|+
T Consensus 33 pll~~tl~~f~~~~~---i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~Vl 104 (230)
T COG1211 33 PLLEHTLEAFLESPA---IDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVK--GGATRQESVYNGLQALSKYDSDWVL 104 (230)
T ss_pred EehHHHHHHHHhCcC---CCeEEEEEChhhhHHHHHhhh---hccCCeEEEec--CCccHHHHHHHHHHHhhccCCCEEE
Confidence 588999998876543 238998877666554442222 22234566664 33445667777777776 88999
Q ss_pred EecCCccc-CCCChHHHHHhhh
Q psy11642 173 FLDAHCEV-GLNWLPPLLAPIY 193 (372)
Q Consensus 173 flD~D~~~-~~~~L~~ll~~~~ 193 (372)
+-|+==-+ +++.++++++...
T Consensus 105 vHDaaRPf~~~~~i~~li~~~~ 126 (230)
T COG1211 105 VHDAARPFLTPKLIKRLIELAD 126 (230)
T ss_pred EeccccCCCCHHHHHHHHHhhc
Confidence 99887754 6688999995444
No 172
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.93 E-value=11 Score=36.74 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=66.0
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
++|.-+. ..|..+|+++.+.. . +|+|+-+... + .+.++.. ..+.++..+...|.+.+...++...
T Consensus 22 l~~v~gk--pli~~~l~~l~~~~---~--~i~vv~~~~~----~-~i~~~~~---~~~~~~~~~~~~g~~~ai~~a~~~l 86 (448)
T PRK14357 22 LHKISGK--PMINWVIDTAKKVA---Q--KVGVVLGHEA----E-LVKKLLP---EWVKIFLQEEQLGTAHAVMCARDFI 86 (448)
T ss_pred eeEECCe--eHHHHHHHHHHhcC---C--cEEEEeCCCH----H-HHHHhcc---cccEEEecCCCCChHHHHHHHHHhc
Confidence 5566564 58999999887742 2 6666643221 1 3333332 2455665666778888888888776
Q ss_pred c-CcEEEEecCCc-ccCCCChHHHHHhhhcCCCEEE
Q psy11642 167 R-GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT 200 (372)
Q Consensus 167 ~-gd~i~flD~D~-~~~~~~L~~ll~~~~~~~~~~v 200 (372)
. .+.++++++|. .+....+..+++.+.+....++
T Consensus 87 ~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~t 122 (448)
T PRK14357 87 EPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVT 122 (448)
T ss_pred CcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEE
Confidence 4 58999999998 4567788999988766544433
No 173
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=84.89 E-value=17 Score=33.42 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=61.0
Q ss_pred eEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCc----EEEEecCCCc--ch--
Q psy11642 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGK----VRLIRNTERE--GL-- 155 (372)
Q Consensus 84 vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~----v~~i~~~~n~--G~-- 155 (372)
++||++..+ . +.+..+|.|++..+...+ .+.|+.|....+...+.++++....... +..+..+... +.
T Consensus 3 ~~vv~~g~~-~-~~~~~~lkSil~~n~~~l--~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~ 78 (304)
T cd06430 3 LAVVACGER-L-EETLTMLKSAIVFSQKPL--RFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKK 78 (304)
T ss_pred EEEEEcCCc-H-HHHHHHHHHHHHhCCCCE--EEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhh
Confidence 566666666 4 888999999977664444 7777777644455554788886543222 3333332221 11
Q ss_pred -----HHHHHhhhhhc-cCcEEEEecCCcccCCCChHHHHHhh
Q psy11642 156 -----IRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAPI 192 (372)
Q Consensus 156 -----~~a~n~g~~~a-~gd~i~flD~D~~~~~~~L~~ll~~~ 192 (372)
+..|-...+.- .-|-++.||+|+.+.. -|+++.+.+
T Consensus 79 l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~-dI~eL~~~~ 120 (304)
T cd06430 79 LFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLR-PVEEIWSFL 120 (304)
T ss_pred cccHHHHHHHHHHHHhhhhceEEEeccceeecC-CHHHHHHHH
Confidence 12222222222 3578999999998854 466666654
No 174
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=84.18 E-value=10 Score=32.98 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc-cCcEEEEe
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-RGEVIVFL 174 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a-~gd~i~fl 174 (372)
..+..+++.+....... +|+||-+... .+...+.+.... ..+.++... .+.+.+...|+... ..++++++
T Consensus 32 pli~~~l~~l~~~~~~~---~ivvv~~~~~---~~~~~~~~~~~~-~~~~~~~~~--~~~~~sv~~~l~~~~~~d~vlv~ 102 (227)
T PRK00155 32 PILEHTLEAFLAHPRID---EIIVVVPPDD---RPDFAELLLAKD-PKVTVVAGG--AERQDSVLNGLQALPDDDWVLVH 102 (227)
T ss_pred EHHHHHHHHHHcCCCCC---EEEEEeChHH---HHHHHHHhhccC-CceEEeCCc--chHHHHHHHHHHhCCCCCEEEEc
Confidence 68899999887643222 6777654322 121222222111 234444332 24677777778765 57899999
Q ss_pred cCCcc-cCCCChHHHHHhhhcCCC
Q psy11642 175 DAHCE-VGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 175 D~D~~-~~~~~L~~ll~~~~~~~~ 197 (372)
|+|.. ++++.++.+++.+.....
T Consensus 103 ~~D~P~i~~~~i~~li~~~~~~~~ 126 (227)
T PRK00155 103 DAARPFLTPDDIDRLIEAAEETGA 126 (227)
T ss_pred cCccCCCCHHHHHHHHHHHhhCCC
Confidence 99996 678999999998876543
No 175
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.05 E-value=5.7 Score=38.77 Aligned_cols=94 Identities=6% Similarity=0.005 Sum_probs=61.3
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|..+ . ..|..+++++..... . +|+||-.... + .++++... ..++++.++...|.+.+...+++..
T Consensus 27 l~~i~g-k-pli~~~l~~l~~~~~-~---~iivv~~~~~-~----~i~~~~~~--~~~~~v~~~~~~Gt~~al~~a~~~l 93 (456)
T PRK14356 27 LQTLLG-E-PMLRFVYRALRPLFG-D---NVWTVVGHRA-D----MVRAAFPD--EDARFVLQEQQLGTGHALQCAWPSL 93 (456)
T ss_pred ecccCC-C-cHHHHHHHHHHhcCC-C---cEEEEECCCH-H----HHHHhccc--cCceEEEcCCCCCcHHHHHHHHHHH
Confidence 344445 3 588999998865432 1 6666543221 1 33333322 2467777766678877777776654
Q ss_pred ---cCcEEEEecCCc-ccCCCChHHHHHhhh
Q psy11642 167 ---RGEVIVFLDAHC-EVGLNWLPPLLAPIY 193 (372)
Q Consensus 167 ---~gd~i~flD~D~-~~~~~~L~~ll~~~~ 193 (372)
..++++++++|. .++++.++.+++...
T Consensus 94 ~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 94 TAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred hhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 358999999999 567888999998765
No 176
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=83.86 E-value=11 Score=32.57 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=58.8
Q ss_pred CCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc-cCcE
Q psy11642 92 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-RGEV 170 (372)
Q Consensus 92 n~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a-~gd~ 170 (372)
+.. ..|..+++.+....... +|+||-+.... . .+....... ..+.++... .+...+...|+... ..++
T Consensus 25 ~gk-pll~~~l~~l~~~~~~~---~ivVv~~~~~~---~-~~~~~~~~~-~~~~~~~~~--~~~~~sl~~~l~~~~~~d~ 93 (217)
T TIGR00453 25 GGR-PLLEHTLDAFLAHPAID---EVVVVVSPEDQ---E-FFQKYLVAR-AVPKIVAGG--DTRQDSVRNGLKALKDAEW 93 (217)
T ss_pred CCe-EHHHHHHHHHhcCCCCC---EEEEEEChHHH---H-HHHHHhhcC-CcEEEeCCC--chHHHHHHHHHHhCCCCCE
Confidence 344 68999999987632222 67776543211 1 222222211 124444332 23556777788776 6789
Q ss_pred EEEecCCcc-cCCCChHHHHHhhhcCCC
Q psy11642 171 IVFLDAHCE-VGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 171 i~flD~D~~-~~~~~L~~ll~~~~~~~~ 197 (372)
++++++|.. ++++.+..+++.+...+.
T Consensus 94 vlv~~~D~P~i~~~~i~~li~~~~~~~~ 121 (217)
T TIGR00453 94 VLVHDAARPFVPKELLDRLLEALRKAGA 121 (217)
T ss_pred EEEccCccCCCCHHHHHHHHHHHhhCCc
Confidence 999999995 688999999998876543
No 177
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=83.55 E-value=22 Score=31.66 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC-----C--cc----hHHHHHhhhh
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-----R--EG----LIRTRSRGAK 164 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~-----n--~G----~~~a~n~g~~ 164 (372)
..+..++.||+..+... +.+.|++|+-+++..+ .++++.+.++..+.++.-.. . .. .+.++ ..+.
T Consensus 14 ~~~~v~l~Sll~nn~~~--~~fyil~~~is~e~~~-~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~y~r-L~~~ 89 (248)
T cd06432 14 RFLRIMMLSVMKNTKSP--VKFWFIKNFLSPQFKE-FLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRIIWGYKI-LFLD 89 (248)
T ss_pred HHHHHHHHHHHHcCCCC--EEEEEEeCCCCHHHHH-HHHHHHHHhCCceEEEEecChhhhhcccccchhHHHHHH-HHHH
Confidence 67888999999876433 4999999998877776 88888888766666555321 0 01 11222 1122
Q ss_pred -hc--cCcEEEEecCCcccCCCChHHHHHh
Q psy11642 165 -ES--RGEVIVFLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 165 -~a--~gd~i~flD~D~~~~~~~L~~ll~~ 191 (372)
.- .-+=|+.||+|+.+. +-|.+|.+.
T Consensus 90 ~lLP~~vdkvLYLD~Dilv~-~dL~eL~~~ 118 (248)
T cd06432 90 VLFPLNVDKVIFVDADQIVR-TDLKELMDM 118 (248)
T ss_pred HhhhhccCEEEEEcCCceec-ccHHHHHhc
Confidence 12 358899999999886 567777654
No 178
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=82.82 E-value=7 Score=38.13 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=62.5
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|.-+. ..|..+|+++.+.... +++|+-.. ..+ .++++.. ..+.++..++..|.+.+...++...
T Consensus 24 ll~i~Gk--pli~~~l~~l~~~gi~----~iivvv~~-~~~----~i~~~~~---~~~~~~~~~~~~g~~~al~~a~~~l 89 (458)
T PRK14354 24 LHKVCGK--PMVEHVVDSVKKAGID----KIVTVVGH-GAE----EVKEVLG---DRSEFALQEEQLGTGHAVMQAEEFL 89 (458)
T ss_pred hCEeCCc--cHHHHHHHHHHhCCCC----eEEEEeCC-CHH----HHHHHhc---CCcEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455564 5899999998765322 55544322 111 3333332 2355665666678888888887765
Q ss_pred c--CcEEEEecCCc-ccCCCChHHHHHhhhcCC
Q psy11642 167 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDR 196 (372)
Q Consensus 167 ~--gd~i~flD~D~-~~~~~~L~~ll~~~~~~~ 196 (372)
. .+.++++++|. .+.+..++.+++.+.+..
T Consensus 90 ~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~ 122 (458)
T PRK14354 90 ADKEGTTLVICGDTPLITAETLKNLIDFHEEHK 122 (458)
T ss_pred cccCCeEEEEECCccccCHHHHHHHHHHHHhcC
Confidence 4 47899999998 567889999998876543
No 179
>KOG2264|consensus
Probab=82.46 E-value=2.1 Score=41.69 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=70.6
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhh
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 162 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g 162 (372)
.++||+.||.++ +.|..+|+.+-...|-+ .||||=|...+..-. . .+-. .+..|.+++.++|.= ..|-.-
T Consensus 650 QFTvVmLTYERe-~VLm~sLeRL~gLPYLn---KvvVVWNspk~P~dd-l--~WPd-igvPv~viR~~~NsL--NNRFlP 719 (907)
T KOG2264|consen 650 QFTVVMLTYERE-AVLMGSLERLHGLPYLN---KVVVVWNSPKDPPDD-L--TWPD-IGVPVEVIRVAENSL--NNRFLP 719 (907)
T ss_pred eEEEEEEEehHH-HHHHHHHHHhhCCcccc---eEEEEeCCCCCChhc-c--cCcC-CCCceEEEEcccccc--cccccC
Confidence 599999999999 99999999987776655 789998877654321 0 0111 124688888776631 122223
Q ss_pred hhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe
Q psy11642 163 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 201 (372)
Q Consensus 163 ~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~ 201 (372)
......+-|+-+|+|..+..+-+---..-..++.+.+|+
T Consensus 720 wd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVG 758 (907)
T KOG2264|consen 720 WDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVG 758 (907)
T ss_pred chhhhheeeeecccchhhhhhheeeeeehhhhccccccc
Confidence 445568999999999877665443333334444444443
No 180
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=82.15 E-value=14 Score=31.05 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=62.6
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
+++..+ . ..|..+++.+.+... . +|+||-+..++ .++.+.+.. ...+. .....|.+.....|++..
T Consensus 21 Ll~i~G-k-plI~~vi~~l~~~~i-~---~I~Vv~~~~~~-----~~~~~l~~~--~~~~~-~~~g~G~~~~l~~al~~~ 86 (183)
T TIGR00454 21 LIEVCG-R-CLIDHVLSPLLKSKV-N---NIIIATSPHTP-----KTEEYINSA--YKDYK-NASGKGYIEDLNECIGEL 86 (183)
T ss_pred EeEECC-E-EHHHHHHHHHHhCCC-C---EEEEEeCCCHH-----HHHHHHhhc--CcEEE-ecCCCCHHHHHHHHhhcc
Confidence 344444 4 689999999875432 2 66666543322 333444431 12233 356688888888888853
Q ss_pred -cCcEEEEecCCcc-cCCCChHHHHHhhhcCCC
Q psy11642 167 -RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 167 -~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~ 197 (372)
..+.++++-+|.. +.+..+..+++.+...+.
T Consensus 87 ~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~ 119 (183)
T TIGR00454 87 YFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKA 119 (183)
T ss_pred cCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCC
Confidence 3678999999996 588999999998765443
No 181
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=82.01 E-value=54 Score=33.40 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=81.6
Q ss_pred EEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcc-----hHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHH
Q psy11642 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-----LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 190 (372)
Q Consensus 116 eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G-----~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~ 190 (372)
.++.+-.-+.++.+...|+.-.+.+.. |........+. ...+...+......+||+..|+|+.+..+-|-..+.
T Consensus 420 ~~rFvVG~s~n~~l~~~L~~Ea~~ygD-IIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~ 498 (636)
T PLN03133 420 AVRFFVGLHKNQMVNEELWNEARTYGD-IQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLK 498 (636)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHcCC-eEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHH
Confidence 343444445555555566666666653 33332222211 112333344455789999999999998765555554
Q ss_pred hhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHH
Q psy11642 191 PIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAF 270 (372)
Q Consensus 191 ~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~ 270 (372)
....... ...+.+. ......+.. ..+|+ ++..+.. ...--|.++|++.++++++
T Consensus 499 ~~~~~~~-Ly~G~v~-------------~~~~PiRd~-----~sKWY-Vs~~eyp------~~~YPpYasG~gYVlS~Dl 552 (636)
T PLN03133 499 RTNVSHG-LLYGLIN-------------SDSQPHRNP-----DSKWY-ISPEEWP------EETYPPWAHGPGYVVSRDI 552 (636)
T ss_pred hcCCCCc-eEEEEec-------------cCCCcccCC-----CCCCC-CCHHHCC------CCCCCCCCCcCEEEEcHHH
Confidence 3222222 2222221 001111110 01111 2222111 1122457789999999999
Q ss_pred HHHhcC-C-CCCCcccchhhHHHHHHHHH---cCCeEEEEc
Q psy11642 271 FLELGG-Y-DPGLLVWGGENFELSFKIWM---CGGSIEWVP 306 (372)
Q Consensus 271 ~~~iGg-f-d~~~~~~g~ED~dl~~r~~~---~G~~i~~~p 306 (372)
...+-. . ......+..||+-+.+=+.+ .|..+.+..
T Consensus 553 a~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~ 593 (636)
T PLN03133 553 AKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYEN 593 (636)
T ss_pred HHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeC
Confidence 998842 1 11233334799998776543 466655444
No 182
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=81.62 E-value=11 Score=35.74 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=58.7
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhcc
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR 167 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~ 167 (372)
++.-+ . ..|..+++.+.+...-. +|+||-+.... . ..+.+...+. .+.++. ...+...+...|++...
T Consensus 28 l~l~G-k-Pll~~tl~~l~~~~~i~---~IvVVv~~~~~---~-~~~~~~~~~~-~v~~v~--gG~~r~~SV~~gL~~l~ 95 (378)
T PRK09382 28 LRIGG-K-PLWLHVLENLSSAPAFK---EIVVVIHPDDI---A-YMKKALPEIK-FVTLVT--GGATRQESVRNALEALD 95 (378)
T ss_pred EEECC-e-eHHHHHHHHHhcCCCCC---eEEEEeChHHH---H-HHHHhcccCC-eEEEeC--CCchHHHHHHHHHHhcC
Confidence 34444 3 58999999987653212 67776532221 1 3333322211 244442 22335566777777777
Q ss_pred CcEEEEecCCcc-cCCCChHHHHHhhhcC
Q psy11642 168 GEVIVFLDAHCE-VGLNWLPPLLAPIYSD 195 (372)
Q Consensus 168 gd~i~flD~D~~-~~~~~L~~ll~~~~~~ 195 (372)
.+++++.|+|.. ++++.++.+++.+...
T Consensus 96 ~d~VLVhdadrPfv~~e~I~~li~~~~~~ 124 (378)
T PRK09382 96 SEYVLIHDAARPFVPKELIDRLIEALDKA 124 (378)
T ss_pred CCeEEEeeccccCCCHHHHHHHHHHhhcC
Confidence 799999999985 5779999999987654
No 183
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=81.31 E-value=11 Score=35.59 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=60.8
Q ss_pred CCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC--CCcchHHHHHhhhhhccCc
Q psy11642 92 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--EREGLIRTRSRGAKESRGE 169 (372)
Q Consensus 92 n~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~--~n~G~~~a~n~g~~~a~gd 169 (372)
+.. ..|..+++.+... . .+|+|+-.+.. + .+.... . .+.++... ...|...+...|++.+..+
T Consensus 30 ~Gk-pll~~~i~~l~~~-~----~~iivvv~~~~-~----~~~~~~---~-~~~~i~d~~~g~~G~~~si~~gl~~~~~~ 94 (366)
T PRK14489 30 GGK-PLIERVVDRLRPQ-F----ARIHLNINRDP-A----RYQDLF---P-GLPVYPDILPGFQGPLSGILAGLEHADSE 94 (366)
T ss_pred CCe-eHHHHHHHHHHhh-C----CEEEEEcCCCH-H----HHHhhc---c-CCcEEecCCCCCCChHHHHHHHHHhcCCC
Confidence 444 6888888887632 1 16666433322 1 222221 1 23334322 2257888888899888889
Q ss_pred EEEEecCCcc-cCCCChHHHHHhhhcCCCEEEee
Q psy11642 170 VIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVP 202 (372)
Q Consensus 170 ~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p 202 (372)
+++++++|.. ++++.++.+++.+......+++|
T Consensus 95 ~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 95 YLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred cEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 9999999984 68899999999876555555544
No 184
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=80.95 E-value=14 Score=35.04 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=57.3
Q ss_pred cCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC-CcchHHHHHhhhhhccCc
Q psy11642 91 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRGE 169 (372)
Q Consensus 91 yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~-n~G~~~a~n~g~~~a~gd 169 (372)
++.. ..|.++++.+.... . +|+|+-+.+.. . . +. . ..++++.... ..|...+...|++++..+
T Consensus 197 ~~Gk-~ll~~~l~~l~~~~---~--~vvV~~~~~~~---~-~---~~-~--~~v~~i~d~~~~~Gpl~gi~~al~~~~~~ 260 (369)
T PRK14490 197 YHES-NQLVHTAALLRPHC---Q--EVFISCRAEQA---E-Q---YR-S--FGIPLITDSYLDIGPLGGLLSAQRHHPDA 260 (369)
T ss_pred ECCc-cHHHHHHHHHHhhC---C--EEEEEeCCchh---h-H---Hh-h--cCCcEEeCCCCCCCcHHHHHHHHHhCCCC
Confidence 3444 68888888886431 1 67776543321 1 1 21 1 2466665543 468778888888888888
Q ss_pred EEEEecCCcc-cCCCChHHHHHhh
Q psy11642 170 VIVFLDAHCE-VGLNWLPPLLAPI 192 (372)
Q Consensus 170 ~i~flD~D~~-~~~~~L~~ll~~~ 192 (372)
.++++=+|+- ++++.++.|+...
T Consensus 261 ~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 261 AWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred cEEEEeCCcCCCCHHHHHHHHHhc
Confidence 8999999996 4779999999874
No 185
>KOG2791|consensus
Probab=80.62 E-value=19 Score=33.09 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=35.3
Q ss_pred cchhccHHHHHHhcCCCCCCcccchhh--HHHHHH--HHH---cCCeEEEEcccEEEEeccCC
Q psy11642 262 GLFAMDRAFFLELGGYDPGLLVWGGEN--FELSFK--IWM---CGGSIEWVPCSRIGHVYRSF 317 (372)
Q Consensus 262 ~~~~irr~~~~~iGgfd~~~~~~g~ED--~dl~~r--~~~---~G~~i~~~p~~~v~H~~~~~ 317 (372)
-.+++.|.+++++-+-.+.|-.| +| +|+.+. ... .-+++..-|..++.|.....
T Consensus 318 mG~al~rn~wqki~~c~~~FC~~--DDYNWDwtl~~~~~~clp~~~~vl~~~~pr~~H~GdCG 378 (455)
T KOG2791|consen 318 MGYALNRNVWQKIHQCAREFCFF--DDYNWDWTLWATVFPCLPSPVYVLRGPRPRAVHFGDCG 378 (455)
T ss_pred chhhhhHHHHHHHHHhHHhhccc--ccCCcceeehhhhccccCcceEEeecCCCceEEecccc
Confidence 35799999999998766666553 44 333322 222 35667777889999987543
No 186
>PRK10122 GalU regulator GalF; Provisional
Probab=80.60 E-value=25 Score=32.19 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=62.7
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHH-------------------HHHHH--cCCcEE
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE-------------------DYIQR--FNGKVR 145 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~-------------------~~~~~--~~~~v~ 145 (372)
.+|.-+. ..|...|+++.+.... +|+|+-.- ..+.+.+.+. .+... ++.++.
T Consensus 28 llpi~gk--piI~~~l~~l~~~Gi~----~i~iv~~~-~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~ 100 (297)
T PRK10122 28 MLPIVDK--PMIQYIVDEIVAAGIK----EIVLVTHA-SKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIM 100 (297)
T ss_pred eeEECCE--EHHHHHHHHHHHCCCC----EEEEEcCC-ChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEE
Confidence 5566665 4889999998875432 67666432 2222211111 01111 122467
Q ss_pred EEecCCCcchHHHHHhhhhhcc-CcEEEEecCCcccCCC-------ChHHHHHhhhcCCC
Q psy11642 146 LIRNTEREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLN-------WLPPLLAPIYSDRK 197 (372)
Q Consensus 146 ~i~~~~n~G~~~a~n~g~~~a~-gd~i~flD~D~~~~~~-------~L~~ll~~~~~~~~ 197 (372)
++.+++..|.++|.-.+..... .++++++ +|..+.++ -+..+++.+.+...
T Consensus 101 ~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~ 159 (297)
T PRK10122 101 NVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred EeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCC
Confidence 7777788999999988888764 4566655 77776543 47888887765443
No 187
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.46 E-value=11 Score=36.80 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=63.7
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
.+|.-+. ..|.++|+++.+.... +|+|+-... .+ .++++... .++.++..++..|.+.+...++...
T Consensus 27 l~~i~gk--pli~~~i~~l~~~gi~----~i~vv~~~~-~~----~i~~~~~~--~~~~~i~~~~~~Gt~~al~~a~~~l 93 (456)
T PRK09451 27 LHTLAGK--PMVQHVIDAANELGAQ----HVHLVYGHG-GD----LLKQTLAD--EPLNWVLQAEQLGTGHAMQQAAPFF 93 (456)
T ss_pred cceeCCh--hHHHHHHHHHHhcCCC----cEEEEECCC-HH----HHHHhhcc--CCcEEEECCCCCCcHHHHHHHHHhh
Confidence 4555564 5889999988765322 566665421 11 33444332 2577777767788888888888765
Q ss_pred c-CcEEEEecCCc-ccCCCChHHHHHhhhcC
Q psy11642 167 R-GEVIVFLDAHC-EVGLNWLPPLLAPIYSD 195 (372)
Q Consensus 167 ~-gd~i~flD~D~-~~~~~~L~~ll~~~~~~ 195 (372)
. .+.++++++|. .+.+..++.+++...+.
T Consensus 94 ~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~ 124 (456)
T PRK09451 94 ADDEDILMLYGDVPLISVETLQRLRDAKPQG 124 (456)
T ss_pred ccCCcEEEEeCCcccCCHHHHHHHHHHhhcC
Confidence 3 57899999998 46778888888765443
No 188
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=80.36 E-value=35 Score=32.55 Aligned_cols=170 Identities=14% Similarity=0.054 Sum_probs=90.7
Q ss_pred EEEEEeCCCC--chhhHHHHHHHHHHcCCcEEEEecCCCc-chH----HHHHhhhhhccCcEEEEecCCcccCCCChHHH
Q psy11642 116 EIILVDDFSS--KADLDQKLEDYIQRFNGKVRLIRNTERE-GLI----RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPL 188 (372)
Q Consensus 116 eIIvVDd~S~--d~t~~~~l~~~~~~~~~~v~~i~~~~n~-G~~----~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~l 188 (372)
.++.|-.-|. +..+...|++-.+.++ .+.+....++. .+. .....+.+....+|++-.|+|+.+..+-|-..
T Consensus 179 ~vrFVIG~s~~~~~~ldr~Le~Ea~~yg-DIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~ 257 (408)
T PLN03193 179 IIRFVIGHSATSGGILDRAIEAEDRKHG-DFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGET 257 (408)
T ss_pred EEEEEeecCCCcchHHHHHHHHHHHHhC-CEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHH
Confidence 4444444443 3455556666666665 34444333332 122 22333444557899999999999998877777
Q ss_pred HHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccH
Q psy11642 189 LAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDR 268 (372)
Q Consensus 189 l~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr 268 (372)
+......+...+ +.+.. + + .+.. ...+...+..+.. ......-.+.++|+..++++
T Consensus 258 L~~~~~~~rlYi-G~m~~--g------P-------vr~~-----~~~ky~epe~w~~---~~~~~~YPpyAsG~gYVlS~ 313 (408)
T PLN03193 258 LVRHRKKPRVYI-GCMKS--G------P-------VLSQ-----KGVRYHEPEYWKF---GENGNKYFRHATGQLYAISK 313 (408)
T ss_pred HHhcCCCCCEEE-Eeccc--C------c-------cccC-----CCCcCcCcccccc---cCccccCCCCCCcceEEehH
Confidence 754433333322 22210 0 0 0000 0000000000000 00011124567888999999
Q ss_pred HHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEE
Q psy11642 269 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312 (372)
Q Consensus 269 ~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H 312 (372)
++...+-.-...+..+..||+-+..= ..|..+.++.+.+..+
T Consensus 314 DLa~~I~~n~~~L~~y~~EDV~vG~W--l~~L~V~~vdd~~fcc 355 (408)
T PLN03193 314 DLASYISINQHVLHKYANEDVSLGSW--FIGLDVEHIDDRRLCC 355 (408)
T ss_pred HHHHHHHhChhhhcccCcchhhhhhH--hccCCceeeecccccC
Confidence 99988864444555555788877654 4677788777776664
No 189
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=77.65 E-value=14 Score=30.85 Aligned_cols=87 Identities=9% Similarity=0.138 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecC-CCcchHHHHHhhhhhc---cCcEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKES---RGEVI 171 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~-~n~G~~~a~n~g~~~a---~gd~i 171 (372)
..|..+++.+.... .+||||-+... . +. . ..++++... ...|...+.-.|++.+ ..+++
T Consensus 16 ~ll~~~~~~l~~~~-----~~iivv~~~~~--~-------~~-~--~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~ 78 (178)
T PRK00576 16 TLVEHVVGIVGQRC-----APVFVMAAPGQ--P-------LP-E--LPAPVLRDELRGLGPLPATGRGLRAAAEAGARLA 78 (178)
T ss_pred CHHHHHHHHHhhcC-----CEEEEECCCCc--c-------cc-c--CCCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEE
Confidence 57888888765432 16777754321 1 11 1 134555432 2356566666666544 57999
Q ss_pred EEecCCcc-cCCCChHHHHHhhhcCCCEE
Q psy11642 172 VFLDAHCE-VGLNWLPPLLAPIYSDRKIM 199 (372)
Q Consensus 172 ~flD~D~~-~~~~~L~~ll~~~~~~~~~~ 199 (372)
+++=+|+- ++++.++.|++........+
T Consensus 79 lv~~~DmP~i~~~~i~~L~~~~~~~~~~~ 107 (178)
T PRK00576 79 FVCAVDMPYLTVELIDDLARPAAQTDAEV 107 (178)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhhcCCCcE
Confidence 99999996 57799999998765554433
No 190
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=76.49 E-value=41 Score=29.85 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=57.7
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcE---------------------E
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV---------------------R 145 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v---------------------~ 145 (372)
.+|.-++ ..|..+|.++.+... .+|+||-.- ..+...+.+.++... ...+ .
T Consensus 24 llpv~g~--pii~~~l~~l~~~gi----~~i~iv~~~-~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (254)
T TIGR02623 24 MVEIGGK--PILWHIMKIYSHHGI----NDFIICCGY-KGYVIKEYFANYFLH-MSDVTFHMADNTMEVHHKRVEPWRVT 95 (254)
T ss_pred eeEECCE--EHHHHHHHHHHHCCC----CEEEEEcCC-CHHHHHHHHHhhhhc-ccCeeEEecccccccccccCCcccee
Confidence 4555554 478888888876432 277776542 222222233222110 0112 2
Q ss_pred EEecCCCcchHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 146 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 146 ~i~~~~n~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
+....+..|.++|...+......+.++++++|..+. .-+..+++...+...
T Consensus 96 ~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~~~~ 146 (254)
T TIGR02623 96 LVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRKHGK 146 (254)
T ss_pred eeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHHcCC
Confidence 222234467788887777776656777999998764 457777776655444
No 191
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=76.21 E-value=60 Score=29.39 Aligned_cols=139 Identities=12% Similarity=-0.019 Sum_probs=78.4
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccC-CcceeeeccCCCCccccccccccccccCCCcHHH
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY-QTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 243 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
.+..|||++.|.|..++..-+.++++.+.+..-.+..|.++.-.. -+.....+.......+ .......+
T Consensus 114 v~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr-~~~~~~~~--------- 183 (294)
T PF05212_consen 114 VAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHR-KTRGGPRC--------- 183 (294)
T ss_pred hccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEe-ccCCCCCc---------
Confidence 356899999999999999999999999988777666676642211 1111111111110000 00000000
Q ss_pred HhhccCCCCcccCccccccchhccHHHHHHhcC-CCCC-CcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCC
Q psy11642 244 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGG-YDPG-LLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSF 317 (372)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGg-fd~~-~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~ 317 (372)
......|-.+..+-.-+=+|+|++++-+-. +-.+ ...| |=|+-++.-+-....+|.++....|.|..-.+
T Consensus 184 ---~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGW-GLDf~~~~c~~~~~~kiGVVDs~~VvH~gvpt 255 (294)
T PF05212_consen 184 ---CDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGW-GLDFKWGYCAGDRHKKIGVVDSQYVVHTGVPT 255 (294)
T ss_pred ---CCCCCCCCcceEEEEecceechHHHHHHHhcccCCCcccc-chhhhHHHHhccccccEEEEeeEEEEEcCCCc
Confidence 000011111111111123589999988763 3333 4667 66777777665567899999999999975433
No 192
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=75.34 E-value=6 Score=42.03 Aligned_cols=56 Identities=21% Similarity=0.019 Sum_probs=46.3
Q ss_pred CCCCceEEEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHH
Q psy11642 79 LDLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 134 (372)
Q Consensus 79 ~~~p~vSVIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~ 134 (372)
..+|.|.|.|+|-+ |+.-...+|+-||++-.||....-+.|-|||.+.=|.+...|
T Consensus 284 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~E 342 (1044)
T PLN02915 284 NRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSE 342 (1044)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHH
Confidence 45999999999965 444578899999999999988889999999999877764443
No 193
>PLN02436 cellulose synthase A
Probab=75.18 E-value=5.4 Score=42.44 Aligned_cols=56 Identities=18% Similarity=0.048 Sum_probs=46.5
Q ss_pred CCCCceEEEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHH
Q psy11642 79 LDLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 134 (372)
Q Consensus 79 ~~~p~vSVIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~ 134 (372)
.++|.|.|.|+|-+ |+.-...+|+-||++-.||....-+.|-|||.+.=|.+...|
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~E 420 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSE 420 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHH
Confidence 56999999999965 444578899999999999988889999999999877764433
No 194
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=75.17 E-value=31 Score=29.52 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhccCc---EEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGE---VIV 172 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~gd---~i~ 172 (372)
..|..+|+.+++...-+ +|+|.-|. + .+.++++++...+.+.+. .-.........++..+..+ +++
T Consensus 25 pLi~~~i~~a~~s~~~d---~IvVaTd~---~----~i~~~~~~~g~~v~~~~~-~~~~~~~r~~~~~~~~~~~~~~~vv 93 (217)
T PF02348_consen 25 PLIEYVIERAKQSKLID---EIVVATDD---E----EIDDIAEEYGAKVIFRRG-SLADDTDRFIEAIKHFLADDEDIVV 93 (217)
T ss_dssp EHHHHHHHHHHHTTTTS---EEEEEESS---H----HHHHHHHHTTSEEEE--T-TSSSHHHHHHHHHHHHTCSTTSEEE
T ss_pred cHHHHHHHHHHhCCCCC---eEEEeCCC---H----HHHHHHHHcCCeeEEcCh-hhcCCcccHHHHHHHhhhhHHhhcc
Confidence 68899999887655433 77765432 2 344455565545544433 3333344445566666666 999
Q ss_pred EecCCccc-CCCChHHHHHhhhcCCCE
Q psy11642 173 FLDAHCEV-GLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 173 flD~D~~~-~~~~L~~ll~~~~~~~~~ 198 (372)
.+.+|+.+ .|..+..+++.+.+....
T Consensus 94 ~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 94 RLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp EESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred ccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 99999965 779999999999887653
No 195
>PLN02400 cellulose synthase
Probab=75.08 E-value=5.3 Score=42.58 Aligned_cols=56 Identities=20% Similarity=0.045 Sum_probs=46.5
Q ss_pred CCCCceEEEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHH
Q psy11642 79 LDLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 134 (372)
Q Consensus 79 ~~~p~vSVIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~ 134 (372)
.++|.|.|.|+|-+ |+.-...+|+-||++-.||....-+.|-|||.+.=|.+...+
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~E 411 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSE 411 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHH
Confidence 56999999999965 444578899999999999988889999999999877764443
No 196
>KOG1111|consensus
Probab=75.03 E-value=27 Score=32.70 Aligned_cols=55 Identities=20% Similarity=0.441 Sum_probs=43.4
Q ss_pred ecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec
Q psy11642 90 FHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN 149 (372)
Q Consensus 90 ~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~ 149 (372)
+||...+.|.+.|.++.++.+ +. ++|++-||.....+++.++++.-+ .++.++..
T Consensus 205 vyrKGiDll~~iIp~vc~~~p-~v--rfii~GDGPk~i~lee~lEk~~l~--~rV~~lG~ 259 (426)
T KOG1111|consen 205 VYRKGIDLLLEIIPSVCDKHP-EV--RFIIIGDGPKRIDLEEMLEKLFLQ--DRVVMLGT 259 (426)
T ss_pred eeccchHHHHHHHHHHHhcCC-Ce--eEEEecCCcccchHHHHHHHhhcc--CceEEecc
Confidence 478877899999999988764 44 999999999988888788877543 46777653
No 197
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=74.57 E-value=6.5 Score=40.14 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=42.1
Q ss_pred CcEEEEecCCCcc-----hHHHHHhhhhhc----cCcEEEEecCCccc-CCCChHHHHHhhhcCC
Q psy11642 142 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYSDR 196 (372)
Q Consensus 142 ~~v~~i~~~~n~G-----~~~a~n~g~~~a----~gd~i~flD~D~~~-~~~~L~~ll~~~~~~~ 196 (372)
+.+.++..+++.| +++|.|+.++.+ .+++|+-+|.|..+ ++..+.+.+-.+.+..
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~ 230 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPK 230 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCC
Confidence 3677888777766 788888887654 59999999999976 5678877777765543
No 198
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=73.58 E-value=24 Score=31.85 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=50.6
Q ss_pred EEEEecCCChhHHHHHHHHHHccCCcCCccEEEEE--eCCCCchhhHHHHHHHHH--HcCCcEEEEecCCCcch-----H
Q psy11642 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILV--DDFSSKADLDQKLEDYIQ--RFNGKVRLIRNTEREGL-----I 156 (372)
Q Consensus 86 VIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvV--Dd~S~d~t~~~~l~~~~~--~~~~~v~~i~~~~n~G~-----~ 156 (372)
|||++.+........+|..|.... ..+.+||+.- +|-+. +..+ .+..... ..+ ++-+..++-.+. +
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g-~~LPIEI~~~~~~dl~~-~~~~-~l~~~q~v~~vd--~~~~~~~~~~~~~~~~~~ 78 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLG-NTLPIEIIYPGDDDLSK-EFCE-KLLPDQDVWFVD--ASCVIDPDYLGKSFSKKG 78 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhC-CCCCEEEEeCCccccCH-HHHH-HHhhhhhhheec--ceEEeeccccccccccCC
Confidence 788888865444556777666532 3445688887 34322 2222 2222000 112 222222222221 1
Q ss_pred H-HHHhhhhhccCcEEEEecCCcccCCCChHHHHH
Q psy11642 157 R-TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 190 (372)
Q Consensus 157 ~-a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~ 190 (372)
- ..-.|+-..+-+=|++||+|.++-.+ .+.+.+
T Consensus 79 ~~~K~lA~l~ssFeevllLDaD~vpl~~-p~~lF~ 112 (271)
T PF11051_consen 79 FQNKWLALLFSSFEEVLLLDADNVPLVD-PEKLFE 112 (271)
T ss_pred chhhhhhhhhCCcceEEEEcCCcccccC-HHHHhc
Confidence 1 12234445678899999999987544 444433
No 199
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=72.46 E-value=61 Score=27.84 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=56.4
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC--------CcEEEEecCCCcchHHH
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN--------GKVRLIRNTEREGLIRT 158 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~--------~~v~~i~~~~n~G~~~a 158 (372)
.+|.-|.. .|...|+++.+.... +|+|+-+.. .+ .++++..... ..+.++.+++..|.+.|
T Consensus 25 llpi~g~p--iI~~~l~~l~~~Gi~----~I~iv~~~~-~~----~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~a 93 (217)
T cd04197 25 LLPLANVP--LIDYTLEFLALNGVE----EVFVFCCSH-SD----QIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA 93 (217)
T ss_pred eeEECCEe--hHHHHHHHHHHCCCC----eEEEEeCCC-HH----HHHHHHhhccccccccCcceEEEEeCCCcCccchH
Confidence 56666754 889999998875432 677766542 22 3334443311 13666666666676665
Q ss_pred HHhhhh--hccCcEEEEecCCcccCCCChHHHHHhhhc
Q psy11642 159 RSRGAK--ESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 194 (372)
Q Consensus 159 ~n~g~~--~a~gd~i~flD~D~~~~~~~L~~ll~~~~~ 194 (372)
...... ... +.++++.+|..... -+..+++.+.+
T Consensus 94 l~~~~~~~~~~-~~flv~~gD~i~~~-dl~~~l~~h~~ 129 (217)
T cd04197 94 LRDLDAKGLIR-GDFILVSGDVVSNI-DLKEILEEHKE 129 (217)
T ss_pred HHHHhhccccC-CCEEEEeCCeeecc-CHHHHHHHHHH
Confidence 433211 123 44668899987754 47778887765
No 200
>PLN02248 cellulose synthase-like protein
Probab=70.35 E-value=9.1 Score=40.96 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=33.4
Q ss_pred hHHHHHhhhhh----ccCcEEEEecCCcccCC-CChHHHHHhhhc
Q psy11642 155 LIRTRSRGAKE----SRGEVIVFLDAHCEVGL-NWLPPLLAPIYS 194 (372)
Q Consensus 155 ~~~a~n~g~~~----a~gd~i~flD~D~~~~~-~~L~~ll~~~~~ 194 (372)
+++|+|+.++. ..|+||+.||+|..+.+ ..+.+.+-.+.+
T Consensus 603 KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 603 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 78899988874 46999999999999865 688888887765
No 201
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=70.05 E-value=67 Score=29.46 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=59.8
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHH---------------HHH----c--CCcEE
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDY---------------IQR----F--NGKVR 145 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~---------------~~~----~--~~~v~ 145 (372)
.+|+-++ ..|..+|+++.+.... +|+||-.-.. +...+.+... ..+ . ...+.
T Consensus 33 l~pv~g~--pii~~~l~~l~~~gi~----~i~vv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~ 105 (302)
T PRK13389 33 MLPLVDK--PLIQYVVNECIAAGIT----EIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIM 105 (302)
T ss_pred eeEECCE--EHHHHHHHHHHHCCCC----EEEEEeCCCH-HHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccCceEE
Confidence 5566665 5899999998875322 6666655332 2222122210 000 0 11344
Q ss_pred EEecCCCcchHHHHHhhhhhccCcEEEEecCCcccC-------CCChHHHHHhhhcCCC
Q psy11642 146 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVG-------LNWLPPLLAPIYSDRK 197 (372)
Q Consensus 146 ~i~~~~n~G~~~a~n~g~~~a~gd~i~flD~D~~~~-------~~~L~~ll~~~~~~~~ 197 (372)
.....+..|.+.|.-.+......+-++++.+|..+. ..-+..|++.+.+...
T Consensus 106 ~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~ 164 (302)
T PRK13389 106 QVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH 164 (302)
T ss_pred EeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCC
Confidence 444455688888887777665444456667887763 3677888887755443
No 202
>PLN02436 cellulose synthase A
Probab=69.64 E-value=8.4 Score=41.06 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=42.4
Q ss_pred CcEEEEecCCCcc-----hHHHHHhhhhhc----cCcEEEEecCCccc-CCCChHHHHHhhhc
Q psy11642 142 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYS 194 (372)
Q Consensus 142 ~~v~~i~~~~n~G-----~~~a~n~g~~~a----~gd~i~flD~D~~~-~~~~L~~ll~~~~~ 194 (372)
+.+.++..+++.| +|+|+|+.++.+ .+.||+-||.|..+ ++..+.+.+-.+.+
T Consensus 532 P~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD 594 (1094)
T PLN02436 532 PRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 594 (1094)
T ss_pred ceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcC
Confidence 3788888877766 899999999865 59999999999976 56788777776654
No 203
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=65.45 E-value=58 Score=31.26 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc-c-Cc-EEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-R-GE-VIV 172 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a-~-gd-~i~ 172 (372)
..|...|+++....+.. -++|+-.+.+ . +.+.+.+. ..+.++.+.+..|-+.|..++..+- . .+ .++
T Consensus 31 pMl~hVi~~a~~l~~~~---i~vVvGh~ae--~---V~~~~~~~--~~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vL 100 (460)
T COG1207 31 PMLEHVIDAARALGPDD---IVVVVGHGAE--Q---VREALAER--DDVEFVLQEEQLGTGHAVLQALPALADDYDGDVL 100 (460)
T ss_pred cHHHHHHHHHhhcCcce---EEEEEcCCHH--H---HHHHhccc--cCceEEEecccCChHHHHHhhhhhhhcCCCCcEE
Confidence 58888999988766543 2344433322 1 23333322 2588888999999999999998876 3 33 578
Q ss_pred EecCCcc-cCCCChHHHHHhhhcCCCEE
Q psy11642 173 FLDAHCE-VGLNWLPPLLAPIYSDRKIM 199 (372)
Q Consensus 173 flD~D~~-~~~~~L~~ll~~~~~~~~~~ 199 (372)
++..|+. +.++.|+.|++........+
T Consensus 101 Vl~GD~PLit~~TL~~L~~~~~~~~~~~ 128 (460)
T COG1207 101 VLYGDVPLITAETLEELLAAHPAHGAAA 128 (460)
T ss_pred EEeCCcccCCHHHHHHHHHhhhhcCCce
Confidence 8888885 57799998988876544433
No 204
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=63.50 E-value=43 Score=32.93 Aligned_cols=96 Identities=7% Similarity=0.037 Sum_probs=55.3
Q ss_pred EEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCC-cEEEEecCCCcchHHHHHhhhhhc
Q psy11642 88 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 88 Ip~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~-~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
++.-+.. ..|..+|+.+...... +++||-+.. ... .+++....++. ...++..+...|.+.|.-.++...
T Consensus 27 l~l~g~~-~ll~~tl~~l~~~~~~----~iviv~~~~---~~~-~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~ 97 (468)
T TIGR01479 27 LALVGDL-TMLQQTLKRLAGLPCS----SPLVICNEE---HRF-IVAEQLREIGKLASNIILEPVGRNTAPAIALAALLA 97 (468)
T ss_pred eEcCCCC-cHHHHHHHHHhcCCCc----CcEEecCHH---HHH-HHHHHHHHcCCCcceEEecccccCchHHHHHHHHHH
Confidence 4444545 6899999998765432 566664321 111 33344444321 234666666677766655544433
Q ss_pred -----cCcEEEEecCCcccCC-CChHHHHHhh
Q psy11642 167 -----RGEVIVFLDAHCEVGL-NWLPPLLAPI 192 (372)
Q Consensus 167 -----~gd~i~flD~D~~~~~-~~L~~ll~~~ 192 (372)
..++++++.+|..+.. ..+..+++.+
T Consensus 98 ~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 98 ARRNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HHHHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 2468999999977644 5566666643
No 205
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=63.43 E-value=85 Score=25.98 Aligned_cols=87 Identities=17% Similarity=0.086 Sum_probs=57.9
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec-CCCcc--hHHHHHhhhhhccCc-EEEEecCCcccCCCChHHHHHhh
Q psy11642 117 IILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-TEREG--LIRTRSRGAKESRGE-VIVFLDAHCEVGLNWLPPLLAPI 192 (372)
Q Consensus 117 IIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~-~~n~G--~~~a~n~g~~~a~gd-~i~flD~D~~~~~~~L~~ll~~~ 192 (372)
||+|-|| |......++..+++.. .+.|.. ..|.. -+.-.-..++.|..| +++.+|+--..-.+.=|+.+.++
T Consensus 2 VIlvTDG--D~~A~ravE~aa~~iG--gRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 2 VILVTDG--DEYAKRAVEIAAKNIG--GRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred EEEEECC--hHHHHHHHHHHHHHhC--cEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 7888888 4555657777777765 455543 23322 233455567777765 55555555567778889999999
Q ss_pred hcCCCEEEeeeeecc
Q psy11642 193 YSDRKIMTVPVIDGI 207 (372)
Q Consensus 193 ~~~~~~~v~p~i~~~ 207 (372)
..++..-+.+.+...
T Consensus 78 ~~h~~IeVLG~iAVA 92 (180)
T PF14097_consen 78 ANHPDIEVLGAIAVA 92 (180)
T ss_pred HcCCCceEEEEEEEE
Confidence 999988777766543
No 206
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=62.51 E-value=47 Score=31.15 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=57.5
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC------CcEEEEe-------cCCCc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN------GKVRLIR-------NTERE 153 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~------~~v~~i~-------~~~n~ 153 (372)
++|.-+.. ..|...|+++.+... .||+||-....+. ..+.+. +.+. ..++++. .+...
T Consensus 23 llpv~g~~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~-i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (361)
T TIGR02091 23 AVPFGGKY-RIIDFPLSNCINSGI----RRIGVLTQYKSHS-LNRHIQ---RGWDFDGFIDGFVTLLPAQQRESGTDWYQ 93 (361)
T ss_pred cceeccee-eEeeehhhhhhhcCC----ceEEEEeccChHH-HHHHHH---hccCccCccCCCEEEeCCcccCCCCcccc
Confidence 45555652 367777877776432 2677766543322 221222 1111 1244421 11136
Q ss_pred chHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 154 GLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 154 G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
|.+.+...++.... .+.++++.+|.....+ +..+++.+.+...
T Consensus 94 Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~-l~~~l~~~~~~~~ 139 (361)
T TIGR02091 94 GTADAVYQNLDLIEDYDPEYVLILSGDHIYKMD-YEKMLDYHIESGA 139 (361)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCC-HHHHHHHHHHcCC
Confidence 88888887777664 5788999999876554 7777777655443
No 207
>PLN02400 cellulose synthase
Probab=62.51 E-value=14 Score=39.51 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=41.8
Q ss_pred cEEEEecCCCcc-----hHHHHHhhhhhc----cCcEEEEecCCccc-CCCChHHHHHhhhc
Q psy11642 143 KVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYS 194 (372)
Q Consensus 143 ~v~~i~~~~n~G-----~~~a~n~g~~~a----~gd~i~flD~D~~~-~~~~L~~ll~~~~~ 194 (372)
.+.++..+++.| +|+|+|+-++.+ .+.||+-||.|..+ ++..+.+.+-.+.+
T Consensus 524 ~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD 585 (1085)
T PLN02400 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
T ss_pred eeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheec
Confidence 678888877766 899999999854 59999999999988 56777776666654
No 208
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=61.75 E-value=78 Score=26.11 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=32.0
Q ss_pred CCCcchHH----HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhh
Q psy11642 150 TEREGLIR----TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 192 (372)
Q Consensus 150 ~~n~G~~~----a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~ 192 (372)
+.|.|+.. -.|+-.+..+-++.+++|+.+.+.++.|-.|..+|
T Consensus 117 e~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 117 EKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred cccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 44555433 44555566678999999999999999998887654
No 209
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=61.13 E-value=44 Score=26.05 Aligned_cols=82 Identities=9% Similarity=0.137 Sum_probs=46.1
Q ss_pred EEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc--cCcEEEEecCCcc-cCCCChHHHHHhh
Q psy11642 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES--RGEVIVFLDAHCE-VGLNWLPPLLAPI 192 (372)
Q Consensus 116 eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a--~gd~i~flD~D~~-~~~~~L~~ll~~~ 192 (372)
+++|.-++..+.... +.. .....+.++.+ ...+++.-++.+++.+ ..+-++++-+|+. ++++.|....+.+
T Consensus 12 ~~~l~~~~~~~~~~~---~~~--~~~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~~~L 85 (122)
T PF09837_consen 12 DVVLAYTPDGDHAAF---RQL--WLPSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAFEAL 85 (122)
T ss_dssp EEEEEE----TTHHH---HHH--HH-TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHT
T ss_pred CEEEEEcCCccHHHH---hcc--ccCCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHh
Confidence 677776666654422 221 11245667655 4456677777777666 5679999999995 6789999999998
Q ss_pred hcCCCEEEeeee
Q psy11642 193 YSDRKIMTVPVI 204 (372)
Q Consensus 193 ~~~~~~~v~p~i 204 (372)
... ..+++|.-
T Consensus 86 ~~~-d~VlgPa~ 96 (122)
T PF09837_consen 86 QRH-DVVLGPAE 96 (122)
T ss_dssp TT--SEEEEEBT
T ss_pred ccC-CEEEeecc
Confidence 766 55666643
No 210
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=59.04 E-value=58 Score=28.55 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=51.3
Q ss_pred eEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC-----cchHHH
Q psy11642 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-----EGLIRT 158 (372)
Q Consensus 84 vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n-----~G~~~a 158 (372)
+.-+|.+|+...+.+.+.+..+- .+.+. =+|-||-.|++...+ .++++...++ +|+++..... .+...|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~--~~~~~--f~iHiD~k~~~~~~~-~~~~~~~~~~-nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY--HPDND--FYIHIDKKSPDYFYE-EIKKLISCFP-NVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH----TTSE--EEEEE-TTS-HHHHH-HHHHHHCT-T-TEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc--CCCCE--EEEEEcCCCChHHHH-HHHHhcccCC-ceeecccccccccCCccHHHH
Confidence 34577787744377777776664 22232 346677776654444 5555555544 6777753222 234445
Q ss_pred HHhhhhhc-----cCcEEEEecCCcccCCCChHHHHHhhhcC
Q psy11642 159 RSRGAKES-----RGEVIVFLDAHCEVGLNWLPPLLAPIYSD 195 (372)
Q Consensus 159 ~n~g~~~a-----~gd~i~flD~D~~~~~~~L~~ll~~~~~~ 195 (372)
--.+++.| ..+|+++|-.++.+-. -.+.+.+.+...
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~-s~~~i~~~l~~~ 115 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLK-SNEEIHEFLESN 115 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS--HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCcEEEEccccccccc-chHHHHHHHHhc
Confidence 54454443 5688988888886532 233444444444
No 211
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=57.97 E-value=17 Score=38.87 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=41.5
Q ss_pred CcEEEEecCCCcc-----hHHHHHhhhhhc----cCcEEEEecCCcccC-CCChHHHHHhhhc
Q psy11642 142 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEVG-LNWLPPLLAPIYS 194 (372)
Q Consensus 142 ~~v~~i~~~~n~G-----~~~a~n~g~~~a----~gd~i~flD~D~~~~-~~~L~~ll~~~~~ 194 (372)
+.+.++..+++.| +|+|+|+-++.+ .+.||+-||.|..+. +..+.+.+=.+.+
T Consensus 454 P~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD 516 (1044)
T PLN02915 454 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 516 (1044)
T ss_pred ceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeec
Confidence 3778888877766 899999998876 599999999999884 5777666655543
No 212
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=57.71 E-value=23 Score=31.84 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=46.0
Q ss_pred CcEEEEecCCCcchHHHHHhhhhhccCc-EEEEecCCcccC-CCChHHHHHhhhcCCCEEE
Q psy11642 142 GKVRLIRNTEREGLIRTRSRGAKESRGE-VIVFLDAHCEVG-LNWLPPLLAPIYSDRKIMT 200 (372)
Q Consensus 142 ~~v~~i~~~~n~G~~~a~n~g~~~a~gd-~i~flD~D~~~~-~~~L~~ll~~~~~~~~~~v 200 (372)
.++.++++++..|++.|...|=.....+ +.++|-+|...+ +..+.+|++...+....++
T Consensus 97 ~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi 157 (291)
T COG1210 97 VTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVI 157 (291)
T ss_pred ceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEE
Confidence 3688999999999999999998888877 555555555554 5899999999888666443
No 213
>KOG2288|consensus
Probab=55.98 E-value=28 Score=30.85 Aligned_cols=121 Identities=23% Similarity=0.238 Sum_probs=68.0
Q ss_pred hhhhccCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCccccccccccccccCCCcH
Q psy11642 162 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPE 241 (372)
Q Consensus 162 g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (372)
+.+.-..+|.+=.|+|+.+..+-|..+++....++...++.+-.. +.. ......|. . |.
T Consensus 103 A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg---------~v~-----~~~~~kw~------E-pe 161 (274)
T KOG2288|consen 103 AVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSG---------PVL-----TQPGGKWY------E-PE 161 (274)
T ss_pred HHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCC---------ccc-----cCCCCccc------C-hh
Confidence 344456899999999999999988888888887776655422100 000 00011111 0 00
Q ss_pred HHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEE
Q psy11642 242 REAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI 310 (372)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v 310 (372)
+....... -.+...|+..++++++..-|---..-+..|+.||+ ++-.|..|..+.++.+.+.
T Consensus 162 --Wkfg~~g~---YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDV--SlGaW~~gldV~h~dd~rl 223 (274)
T KOG2288|consen 162 --WKFGDNGN---YFRHATGGGYVLSKDLATYISINRQLLHKYANEDV--SLGAWMIGLDVEHVDDPRL 223 (274)
T ss_pred --hhcCcccc---cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCc--ccceeeeeeeeeEecCCcc
Confidence 00000000 13445677888888887765533333445545654 5667888887776655443
No 214
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=55.90 E-value=1.1e+02 Score=29.68 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=59.6
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH-cC-------CcEEEEe-------cCC
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR-FN-------GKVRLIR-------NTE 151 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~-~~-------~~v~~i~-------~~~ 151 (372)
.+|.-+.. ..|...|.++.+.... +|+|+-.... + .+.++... +. ..+.++. .+.
T Consensus 40 llpv~gkp-~lI~~~l~~l~~~Gi~----~i~vv~~~~~-~----~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~ 109 (425)
T PRK00725 40 AVYFGGKF-RIIDFALSNCINSGIR----RIGVLTQYKA-H----SLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENW 109 (425)
T ss_pred eEEECCEE-EEhHHHHHHHHHCCCC----eEEEEecCCH-H----HHHHHHHhhhcccccCCCCeEEEeCCcccCCCCcc
Confidence 56666654 4788888888764332 6777765432 2 22222221 11 1122221 112
Q ss_pred CcchHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhcCCCE
Q psy11642 152 REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 152 n~G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~ 198 (372)
..|.+.|.-.++.... .+.++++.+|.... .-+..|++...+....
T Consensus 110 ~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~-~dl~~ll~~h~~~~~~ 158 (425)
T PRK00725 110 YRGTADAVYQNLDIIRRYDPKYVVILAGDHIYK-MDYSRMLADHVESGAD 158 (425)
T ss_pred ccCcHHHHHHHHHHHHhcCCCEEEEecCCeEec-cCHHHHHHHHHHcCCC
Confidence 3788888877776654 57899999998664 4588888877655443
No 215
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=55.55 E-value=90 Score=26.82 Aligned_cols=92 Identities=20% Similarity=0.123 Sum_probs=53.6
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHc------CCcEEEE--ecCCCcchHHH
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF------NGKVRLI--RNTEREGLIRT 158 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~------~~~v~~i--~~~~n~G~~~a 158 (372)
.+|.-|. ..|..+|+.+.+.... +|+||-....+.. .+.+.+.. ...+.++ ...+..|-+.+
T Consensus 25 llpv~g~--pli~~~l~~l~~~gi~----~i~vv~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~ 94 (216)
T cd02507 25 LLPVANV--PLIDYTLEWLEKAGVE----EVFVVCCEHSQAI----IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALR 94 (216)
T ss_pred cceECCE--EHHHHHHHHHHHCCCC----eEEEEeCCcHHHH----HHHHHhcccccccCCceEEEEEccCCCCCccHHH
Confidence 4456565 4888889888764322 6766655433322 22222221 1123333 33456788888
Q ss_pred HHhhhhhccCcEEEEecCCcccCCCChHHHHH
Q psy11642 159 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 190 (372)
Q Consensus 159 ~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~ 190 (372)
...+......+ ++++.+|.....+ +..+++
T Consensus 95 l~~~~~~i~~d-flv~~gD~i~~~~-l~~~l~ 124 (216)
T cd02507 95 LRDIRGLIRSD-FLLLSCDLVSNIP-LSELLE 124 (216)
T ss_pred HHHHhhcCCCC-EEEEeCCEeecCC-HHHHHH
Confidence 87777766666 5679999876554 666664
No 216
>KOG1460|consensus
Probab=53.44 E-value=50 Score=30.08 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=62.8
Q ss_pred HHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHH----HhhhhhccCcEEE
Q psy11642 97 SLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR----SRGAKESRGEVIV 172 (372)
Q Consensus 97 ~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~----n~g~~~a~gd~i~ 172 (372)
.+..-|..+.+ -.. ..||++|-=-.++.-.. .+.+.++++...|++++.....|-++++ ++-+ +-.-+.++
T Consensus 37 mI~Hhi~ac~q-i~~--l~eI~LvGFy~e~~f~~-fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl-~g~ps~vF 111 (407)
T KOG1460|consen 37 MIHHHISACKQ-ISG--LAEILLVGFYEERVFTD-FISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQIL-AGSPSAVF 111 (407)
T ss_pred hhhhhHHHHhc-ccc--hhheeEEecccchHHHH-HHHHHHhhcccchhhhccCCCCCcccceeehhhHHh-cCCCceEE
Confidence 55555655433 322 34888886555444333 8888888888789999876667766653 4333 23467889
Q ss_pred EecCCcccCCCChHHHHHhhhcCCCE
Q psy11642 173 FLDAHCEVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 173 flD~D~~~~~~~L~~ll~~~~~~~~~ 198 (372)
+|++|+-++ --|+.|++........
T Consensus 112 vlnaDVCcs-fPl~~ml~ahr~~g~~ 136 (407)
T KOG1460|consen 112 VLNADVCCS-FPLQDMLEAHRRYGGI 136 (407)
T ss_pred EEecceecC-CcHHHHHHHHhhcCCc
Confidence 999997653 3588888887665543
No 217
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=53.19 E-value=50 Score=30.47 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=29.7
Q ss_pred hHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhc
Q psy11642 155 LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 194 (372)
Q Consensus 155 ~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~ 194 (372)
...+-.+|+++|+.+|++=+=+|..+..+-+-.+.+....
T Consensus 83 Qi~St~aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~~ 122 (311)
T PF07507_consen 83 QIVSTLAGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKYPD 122 (311)
T ss_pred HHHHHHHHHHHhCCceEEEEcccccccchHHHHHHHHhcc
Confidence 3456678999999999999999998876555444444433
No 218
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=52.75 E-value=99 Score=26.95 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhcc--CcEEEE
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVF 173 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~--gd~i~f 173 (372)
..|..+|+.+.+...-. +|+||-....-+ .++++... ..++++.-. .........|++... .++|++
T Consensus 29 pvl~~tl~~f~~~~~i~---~Ivvv~~~~~~~----~~~~~~~~--~~v~iv~GG--~tR~~SV~ngL~~l~~~~d~VlI 97 (221)
T PF01128_consen 29 PVLEYTLEAFLASPEID---EIVVVVPPEDID----YVEELLSK--KKVKIVEGG--ATRQESVYNGLKALAEDCDIVLI 97 (221)
T ss_dssp EHHHHHHHHHHTTTTES---EEEEEESGGGHH----HHHHHHHH--TTEEEEE----SSHHHHHHHHHHCHHCTSSEEEE
T ss_pred EeHHHHHHHHhcCCCCC---eEEEEecchhHH----HHHHhhcC--CCEEEecCC--hhHHHHHHHHHHHHHcCCCEEEE
Confidence 68899999987644322 788886544322 44555555 468877532 223334444555543 379999
Q ss_pred ecCCcc-cCCCChHHHHHhhhcC
Q psy11642 174 LDAHCE-VGLNWLPPLLAPIYSD 195 (372)
Q Consensus 174 lD~D~~-~~~~~L~~ll~~~~~~ 195 (372)
-|+=-- ++++.+..+++.+..+
T Consensus 98 HDaaRPfv~~~~i~~~i~~~~~~ 120 (221)
T PF01128_consen 98 HDAARPFVSPELIDRVIEAAREG 120 (221)
T ss_dssp EETTSTT--HHHHHHHHHHHHHT
T ss_pred EccccCCCCHHHHHHHHHHHHhh
Confidence 888774 5779999999998873
No 219
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=51.22 E-value=2.3e+02 Score=27.16 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=51.7
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC--CcchHHHHHhhhh
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGLIRTRSRGAK 164 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~--n~G~~~a~n~g~~ 164 (372)
++|.-+. ..|.++|+.+.+. . . +|+||- +...+ .++++..+....++++..++ ..|.+++....
T Consensus 24 Llpi~gk--Pli~~~i~~l~~~-~-~---~i~Ivv-~~~~~----~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~~-- 89 (430)
T PRK14359 24 LHTICGK--PMLFYILKEAFAI-S-D---DVHVVL-HHQKE----RIKEAVLEYFPGVIFHTQDLENYPGTGGALMGI-- 89 (430)
T ss_pred eCEECCc--cHHHHHHHHHHHc-C-C---cEEEEE-CCCHH----HHHHHHHhcCCceEEEEecCccCCCcHHHHhhc--
Confidence 4456664 4889999988864 2 2 455443 22222 34444443323577776543 25666666442
Q ss_pred hccCcEEEEecCCcc-cCCCChHHHH
Q psy11642 165 ESRGEVIVFLDAHCE-VGLNWLPPLL 189 (372)
Q Consensus 165 ~a~gd~i~flD~D~~-~~~~~L~~ll 189 (372)
....+.++++++|.. ..++.++.++
T Consensus 90 ~~~~d~vlv~~gD~p~~~~~~l~~l~ 115 (430)
T PRK14359 90 EPKHERVLILNGDMPLVEKDELEKLL 115 (430)
T ss_pred ccCCCeEEEEECCccCCCHHHHHHHH
Confidence 224688999999984 4556666655
No 220
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=50.16 E-value=2.2e+02 Score=26.54 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=71.8
Q ss_pred eEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC-----------C
Q psy11642 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-----------R 152 (372)
Q Consensus 84 vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~-----------n 152 (372)
+.|+..+=+.-...+.-+|.|++..+.. ..+.+-+++||=+++... .++++++.+...+.+..... +
T Consensus 3 ~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~-~l~~~~~~f~~~i~~~~id~~~~~~~~~~~~~ 80 (325)
T COG1442 3 IPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKK-KLNETAEPFKSFIVLEVIDIEPFLDYPPFTKR 80 (325)
T ss_pred ccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHH-HHHHHHHhhccceeeEEEechhhhcccccccc
Confidence 3455555333236778899999987754 234888888888877776 89999988876555544321 1
Q ss_pred cc-hHHHHHhhhhhcc-CcEEEEecCCcccCCCChHHHHHhhhcCCCEEEe
Q psy11642 153 EG-LIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 201 (372)
Q Consensus 153 ~G-~~~a~n~g~~~a~-gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~ 201 (372)
.. ..-+|-..+..-. .+=++.+|+|+++.- -|+.+...-..+...+++
T Consensus 81 ~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g-~l~~lf~~~~~~~~~aaV 130 (325)
T COG1442 81 FSKMVLVRYFLADLFPQYDKMLYLDVDVIFCG-DLSELFFIDLEEYYLAAV 130 (325)
T ss_pred hHHHHHHHHHHHHhccccCeEEEEecCEEEcC-cHHHHHhcCCCcceEEEE
Confidence 22 2223444444443 499999999998854 566666654444433333
No 221
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=49.85 E-value=98 Score=27.80 Aligned_cols=106 Identities=10% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCCCCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCc-hhhHHHHHHHHHHcCCcEEEEecCCCcc-
Q psy11642 77 YPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSK-ADLDQKLEDYIQRFNGKVRLIRNTEREG- 154 (372)
Q Consensus 77 ~~~~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d-~t~~~~l~~~~~~~~~~v~~i~~~~n~G- 154 (372)
|.....+|.|.+-+-+.-..++...++|..+.-.++......|.-|.... +..+ +.. ...++++...+..|
T Consensus 29 y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v~-----lg~--~r~~~V~~v~~~~~W 101 (271)
T cd02515 29 YRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEVE-----LGP--GRRLTVLKIAEESRW 101 (271)
T ss_pred HHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCcccc-----cCC--CceeEEEEeccccCC
Confidence 33334566665555555557889999998776666665666676664432 1111 100 12466666544444
Q ss_pred --hHHHHHhhh-------hhccCcEEEEecCCcccCCCChHHHH
Q psy11642 155 --LIRTRSRGA-------KESRGEVIVFLDAHCEVGLNWLPPLL 189 (372)
Q Consensus 155 --~~~a~n~g~-------~~a~gd~i~flD~D~~~~~~~L~~ll 189 (372)
.+-.|-..+ .....||++++|+|..+...+=.+.+
T Consensus 102 ~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~L 145 (271)
T cd02515 102 QDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVETL 145 (271)
T ss_pred cHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHHh
Confidence 222222222 12368999999999998777765555
No 222
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=49.75 E-value=1.2e+02 Score=25.63 Aligned_cols=79 Identities=9% Similarity=0.040 Sum_probs=50.3
Q ss_pred CC-ChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec--CCCcchHHHHHhhhhhccC
Q psy11642 92 NE-GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESRG 168 (372)
Q Consensus 92 n~-~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~--~~n~G~~~a~n~g~~~a~g 168 (372)
+. . ..|.++++.+... . . +|+||-+. +. .. ..+.++.. ....|..++...++.....
T Consensus 32 ~g~~-~ll~~~i~~l~~~-~--~--~vvvv~~~--~~-~~-----------~~~~~v~d~~~~~~gpl~gi~~~l~~~~~ 91 (196)
T PRK00560 32 GSYS-SLLEYQYTRLLKL-F--K--KVYISTKD--KK-FE-----------FNAPFLLEKESDLFSPLFGIINAFLTLQT 91 (196)
T ss_pred CCCC-cHHHHHHHHHHHh-C--C--EEEEEECc--hh-cc-----------cCCcEEecCCCCCCCcHHHHHHHHHhcCC
Confidence 44 5 6888888888754 1 1 67766542 11 01 12334443 2234655666677777778
Q ss_pred cEEEEecCCccc-CCCChHHHHH
Q psy11642 169 EVIVFLDAHCEV-GLNWLPPLLA 190 (372)
Q Consensus 169 d~i~flD~D~~~-~~~~L~~ll~ 190 (372)
++++++=+|+.+ +++.++.++.
T Consensus 92 ~~vlv~~~D~P~i~~~~i~~l~~ 114 (196)
T PRK00560 92 PEIFFISVDTPFVSFESIKKLCG 114 (196)
T ss_pred CeEEEEecCcCcCCHHHHHHHHh
Confidence 999999999965 7788888843
No 223
>KOG2287|consensus
Probab=49.54 E-value=2.3e+02 Score=26.64 Aligned_cols=195 Identities=14% Similarity=0.039 Sum_probs=100.6
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCC-------ccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcc
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQY-------LEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG 154 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~-------~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G 154 (372)
|.+-++|.+.-.. -..+ .++++|+.+. ..-+.+|--.+..+.+...+.+-++.++ .|.+..-..+..
T Consensus 95 ~~lLl~V~S~~~~-farR----~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~yg-DIi~~df~Dty~ 168 (349)
T KOG2287|consen 95 PELLLLVKSAPDN-FARR----NAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYG-DIIQVDFEDTYF 168 (349)
T ss_pred ceEEEEEecCCCC-HHHH----HHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhC-CEEEEecccchh
Confidence 4566666665544 2222 3334444322 1123334333332222335555555555 344443333322
Q ss_pred -----hHHHHHhhhhhc-cCcEEEEecCCcccCCCChHHHHHhhhcCCCEEEeeeeecccCCcceeeeccCCCCcccccc
Q psy11642 155 -----LIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIF 228 (372)
Q Consensus 155 -----~~~a~n~g~~~a-~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~~~~~~~ 228 (372)
.....+.|...+ ..++|+-.|+|+.+.++-|-+++............+.+.. .....+..
T Consensus 169 nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~-------------~~~p~R~~- 234 (349)
T KOG2287|consen 169 NLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQ-------------NAPPIRDK- 234 (349)
T ss_pred chHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecc-------------cCCCCCCC-
Confidence 334555566545 4899999999999998887777776532222222222211 00111110
Q ss_pred ccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHHHHHHHc-CCeEEEEcc
Q psy11642 229 EWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMC-GGSIEWVPC 307 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~~r~~~~-G~~i~~~p~ 307 (372)
..+| .++..+. . ...-.+.++|...++.+++...+-.-......+-.||+-+..=+... |.+-.-.+.
T Consensus 235 ----~~Kw-yVp~~~y-----~-~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~ 303 (349)
T KOG2287|consen 235 ----TSKW-YVPESEY-----P-CSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG 303 (349)
T ss_pred ----CCCC-ccCHHHC-----C-CCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence 0111 1122111 1 11124577889999999999888754444433337999988888876 765554443
No 224
>PF01793 Glyco_transf_15: Glycolipid 2-alpha-mannosyltransferase; InterPro: IPR002685 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This entry represents a family of fungi mannosyl-transferases involved in N-linked and O-linked glycosylation of proteins. They belong to the glycosyltransferase family 15 (GT15 from CAZY). Some of the enzymes in this family have been shown to be involved in O- and N-linked glycan modifications in the Golgi [].; GO: 0000030 mannosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 1S4P_A 1S4O_A 1S4N_A.
Probab=49.14 E-value=52 Score=30.53 Aligned_cols=116 Identities=10% Similarity=0.133 Sum_probs=58.4
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC-Ccc----
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REG---- 154 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~-n~G---- 154 (372)
..++.++|+.++|+....+..+|++|..+-...+.+-.|+++|..=.+.-.+.+.+.. .+.+....-+. ..+
T Consensus 53 ~r~~Aafv~LvrN~dL~~~l~SI~~lE~rFN~kf~YpwvFlnd~pFteeFk~~i~~~~---~~~v~F~~Ip~e~W~~P~~ 129 (328)
T PF01793_consen 53 PRENAAFVMLVRNSDLEGLLSSIRSLEDRFNKKFNYPWVFLNDEPFTEEFKEAISNAT---SGKVEFGLIPKEHWSYPDW 129 (328)
T ss_dssp S---EEEEEE--GGGHHHHHHHHHHHHHHTTTTS---EEEEESS---HHHHHHHHHH----SS-EEEEE--GGGSS--TT
T ss_pred CCCceEEEEEEEchhHHHHHHHHHHHHHHccCCCCCCEEEEeCCCCCHHHHHHHHHhh---cCceEEEEeCHHHcCCCCc
Confidence 4578999999999998899999999987766666779999999876655444554443 33455443221 111
Q ss_pred ----hHH-HHHh----hhhh-----------------------ccCcEEEEecCCcccCCCChHHHHHhhhcCCCE
Q psy11642 155 ----LIR-TRSR----GAKE-----------------------SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 155 ----~~~-a~n~----g~~~-----------------------a~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~ 198 (372)
.+. ++.. |+.. ...+|.+-++.|+.+..+-=-.....|+++...
T Consensus 130 ID~~~a~~~~~~~~~~~v~yg~s~sYr~McRf~SG~F~~hp~l~~ydyyWRvEP~v~~~Cdi~YD~F~~M~~n~k~ 205 (328)
T PF01793_consen 130 IDQEKAAESREKMAEEGVPYGDSESYRHMCRFYSGFFYRHPLLQDYDYYWRVEPDVKFYCDIDYDPFRFMRDNNKK 205 (328)
T ss_dssp S-HHHHHHHHHHHTT-TSTTTT-HHHHHHHHHHHHTGGGSGGGTT-SEEEE--TT-EE-S---S-HHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhcChhhcCccEEEEeCCCceeecCCCCCHHHHHHHhCCe
Confidence 111 1111 1111 136899999999988776666666777777654
No 225
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=48.98 E-value=1.3e+02 Score=28.44 Aligned_cols=100 Identities=10% Similarity=0.127 Sum_probs=59.0
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cC-----CcEEEE----ecCC---
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FN-----GKVRLI----RNTE--- 151 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~-----~~v~~i----~~~~--- 151 (372)
.+|.-+.. ..|..+|+.+.+.... +|+||-.. ..+ .++++... +. ..+.++ ...+
T Consensus 28 llpv~gk~-pli~~~l~~l~~~Gi~----~i~iv~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 97 (380)
T PRK05293 28 AVPFGGKY-RIIDFTLSNCANSGID----TVGVLTQY-QPL----ELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKW 97 (380)
T ss_pred eeeeCCce-eehhHHHHHHHhCCCC----EEEEEecC-CHH----HHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcc
Confidence 56666763 4788888888765432 67666543 222 34444322 11 123432 2222
Q ss_pred CcchHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 152 REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 152 n~G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
..|.+.|...+..... .+.++++.+|.....+ +..+++.......
T Consensus 98 ~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d-~~~ll~~h~~~~~ 145 (380)
T PRK05293 98 YKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMD-YDKMLDYHKEKEA 145 (380)
T ss_pred cCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCC-HHHHHHHHHhcCC
Confidence 2788888888777653 4789999999876554 5567776554433
No 226
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=47.48 E-value=92 Score=29.87 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=59.3
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH-cC---CcEEEEec---CC------Cc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR-FN---GKVRLIRN---TE------RE 153 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~-~~---~~v~~i~~---~~------n~ 153 (372)
.+|.-+.. ..|...|.++.+.... +|+|+-.... + .+.++... +. ..+.++.. .. ..
T Consensus 30 llPv~gk~-plI~~~L~~l~~~Gi~----~i~iv~~~~~-~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (407)
T PRK00844 30 AVPFGGSY-RLIDFVLSNLVNSGYL----RIYVLTQYKS-H----SLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYL 99 (407)
T ss_pred ceeeCCcc-eEhHHHHHHHHHCCCC----EEEEEeccCH-H----HHHHHHHhCcCccccCCCeEEECCcccCCCCCccc
Confidence 56667764 5788888888775433 6777665433 2 23333321 11 01222221 11 37
Q ss_pred chHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 154 GLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 154 G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
|.++|...+..... .++++++.+|.... .-+..|++.......
T Consensus 100 Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h~~~~~ 145 (407)
T PRK00844 100 GSADAIYQSLNLIEDEDPDYVVVFGADHVYR-MDPRQMVDFHIESGA 145 (407)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCEEEc-CCHHHHHHHHHhcCC
Confidence 88888877776653 36899999998654 466778887665544
No 227
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=46.63 E-value=1.4e+02 Score=26.07 Aligned_cols=101 Identities=14% Similarity=0.183 Sum_probs=66.2
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES 166 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a 166 (372)
+.|.-.+ ..|..+|+.+......+ +|||.- |+.++-. .+++++... .+.+++-. ....-.-.-.+++.-
T Consensus 22 LlpL~~~--pmI~~~lervrks~~~d---~ivvAT--S~~~~d~-~l~~~~~~~--G~~vfrGs-~~dVL~Rf~~a~~a~ 90 (241)
T COG1861 22 LLPLGGE--PMIEYQLERVRKSKDLD---KIVVAT--SDKEEDD-ALEEVCRSH--GFYVFRGS-EEDVLQRFIIAIKAY 90 (241)
T ss_pred hhhcCCC--chHHHHHHHHhcccccc---ceEEEe--cCCcchh-HHHHHHHHc--CeeEecCC-HHHHHHHHHHHHHhc
Confidence 4455444 48999999998765533 666653 3333333 788888774 46676532 222333334455666
Q ss_pred cCcEEEEecCCcc-cCCCChHHHHHhhhcCCCE
Q psy11642 167 RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 167 ~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~~ 198 (372)
.++.|+-+-.|+. ++|+.+..++..+.+....
T Consensus 91 ~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 91 SADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 7899999999996 5789999998887765543
No 228
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=42.56 E-value=2.2e+02 Score=24.97 Aligned_cols=88 Identities=23% Similarity=0.150 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEe---cCCCc---c-----hHHHHHhhhh
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR---NTERE---G-----LIRTRSRGAK 164 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~---~~~n~---G-----~~~a~n~g~~ 164 (372)
..+.-++.||++... +.. -+|+++++-+++..+ .|+++ ...+..+. .+... + ..-.+-.+.+
T Consensus 14 ~~a~vl~~SL~~~~~-~~~-~~vl~~~~is~~~~~-~L~~~----~~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~~ 86 (240)
T cd02537 14 PGALVLGYSLRKVGS-SYD-LVVLVTPGVSEESRE-ALEEV----GWIVREVEPIDPPDSANLLKRPRFKDTYTKLRLWN 86 (240)
T ss_pred HHHHHHHHHHHhcCC-CCC-EEEEECCCCCHHHHH-HHHHc----CCEEEecCccCCcchhhhccchHHHHHhHHHHhcc
Confidence 556667888887653 331 234556554444333 44433 22222211 11100 0 0112223333
Q ss_pred hccCcEEEEecCCcccCCCChHHHHHh
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L~~ll~~ 191 (372)
....+-+++||+|+.+..+ |..+.+.
T Consensus 87 l~~~drvlylD~D~~v~~~-i~~Lf~~ 112 (240)
T cd02537 87 LTEYDKVVFLDADTLVLRN-IDELFDL 112 (240)
T ss_pred ccccceEEEEeCCeeEccC-HHHHhCC
Confidence 3467899999999998764 5555554
No 229
>KOG2977|consensus
Probab=41.50 E-value=3.7 Score=36.79 Aligned_cols=105 Identities=18% Similarity=0.016 Sum_probs=59.8
Q ss_pred EEEEEecCCChhHHHHHHH-HHHccC-CcCCccEEEEEeCCCCch-hhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHh
Q psy11642 85 SVILVFHNEGFSSLMRTVH-SIIKRT-PAQYLEEIILVDDFSSKA-DLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR 161 (372)
Q Consensus 85 SVIIp~yn~~~~~l~~~l~-Sl~~qt-~~~~~~eIIvVDd~S~d~-t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~ 161 (372)
+++++..+-. ..|...+. +...++ ..+...||.+-|+||.+. ++. .+..-.++..-.|.+-.-++..++..+...
T Consensus 11 ~~~l~a~v~~-~~l~~~l~~~~~~r~~~e~~e~ei~~~d~g~~k~~~lp-~~~d~~~~~~lsVIVpaynE~~ri~~mlde 88 (323)
T KOG2977|consen 11 STILVAKVLL-KFLSVYLFESHLPRPALENEETEITLDDPGSIKSRTLP-NIRDSPEKMYLSVIVPAYNEEGRIGAMLDE 88 (323)
T ss_pred HHHHHHHHHH-HHHHHHHhhccCCCccccccceEEEEcCCCCccceeCc-ccccChhhceeEEEEecCCcccchHHHHHH
Confidence 3344444433 44555554 555554 344455777777788874 222 222222221112333334556788999999
Q ss_pred hhhhccCcEEE---EecCCcccCCCChHHHHHh
Q psy11642 162 GAKESRGEVIV---FLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 162 g~~~a~gd~i~---flD~D~~~~~~~L~~ll~~ 191 (372)
++....+.|.. |-+.+++++++-....++.
T Consensus 89 av~~le~ry~~~~~F~~eiiVvddgs~d~T~~~ 121 (323)
T KOG2977|consen 89 AVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEV 121 (323)
T ss_pred HHHHHHHHhccCCCCceeEEEeCCCCchhHHHH
Confidence 99887766666 7777777777666555443
No 230
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=41.39 E-value=1.2e+02 Score=22.71 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=26.6
Q ss_pred HHHHHHHHccCCcCCccEEEE-EeCCCCchhhHHHHHHHHHHcCCcEEEE
Q psy11642 99 MRTVHSIIKRTPAQYLEEIIL-VDDFSSKADLDQKLEDYIQRFNGKVRLI 147 (372)
Q Consensus 99 ~~~l~Sl~~qt~~~~~~eIIv-VDd~S~d~t~~~~l~~~~~~~~~~v~~i 147 (372)
...|+.+++. +|+. ..|+ -|+|-.| .+ +..+++++++.+|.-|
T Consensus 52 ~~~i~~i~~~-fP~~--kfiLIGDsgq~D--pe-iY~~ia~~~P~~i~ai 95 (100)
T PF09949_consen 52 RDNIERILRD-FPER--KFILIGDSGQHD--PE-IYAEIARRFPGRILAI 95 (100)
T ss_pred HHHHHHHHHH-CCCC--cEEEEeeCCCcC--HH-HHHHHHHHCCCCEEEE
Confidence 3456666654 4544 5555 4555555 44 7788889998877654
No 231
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=40.48 E-value=1.1e+02 Score=31.93 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=46.9
Q ss_pred HHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcC---CcEEEEecCCCcchHHHHHhhhhhc--cCcEEEEecC
Q psy11642 102 VHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRNTEREGLIRTRSRGAKES--RGEVIVFLDA 176 (372)
Q Consensus 102 l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~---~~v~~i~~~~n~G~~~a~n~g~~~a--~gd~i~flD~ 176 (372)
+.++.+.+.+.. -||++-....|++. .+++++++.. .+++.+......|. .| ...++.| .|.||++=|.
T Consensus 106 l~~~~~~s~~~~--Pil~~~s~g~Dp~~--~i~~lA~~~~~~~~~~~~islG~~~~~-~a-~~~l~~a~~~G~Wv~L~N~ 179 (707)
T PF03028_consen 106 LESIYEESSPTT--PILFILSPGSDPSS--EIEQLAKKKGFGNKKLQSISLGSGQGP-EA-EKALKEAAKEGHWVLLQNC 179 (707)
T ss_dssp HHHHHHCTTTTC---EEEEE-TT--THH--HHHHHHHCTT-----EEEEETTSHHHH-HH-HHHHHHHHHHTSEEEEETG
T ss_pred HHHHHHhcCCCC--ceEEEeCCCCChHH--HHHHHHHHHhhhhhheeecCCCCchHH-HH-HHHHHHHhcCCeEEEcccc
Confidence 444444443333 44444433345543 6788888765 46777777554544 33 3333333 5999999976
Q ss_pred CcccCCCChHHHHHhhhc
Q psy11642 177 HCEVGLNWLPPLLAPIYS 194 (372)
Q Consensus 177 D~~~~~~~L~~ll~~~~~ 194 (372)
|.. +.||..|-..+..
T Consensus 180 HL~--~~wl~~Le~~l~~ 195 (707)
T PF03028_consen 180 HLA--PSWLPQLEKKLES 195 (707)
T ss_dssp GGG--CCCHHCHHHHHHC
T ss_pred hhH--HHHHHHHHHHHhc
Confidence 654 6788776665543
No 232
>KOG2733|consensus
Probab=39.13 E-value=76 Score=29.83 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC-c-chHH
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-E-GLIR 157 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n-~-G~~~ 157 (372)
..+.+|+-|.-+|+. -|.+.|+-+-+.+.+++.-++|+|.|.++..++. +++++ .+++-|... + =.+.
T Consensus 30 ~~~~~slavAGRn~~--KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~----emak~----~~vivN~vGPyR~hGE 99 (423)
T KOG2733|consen 30 VFEGLSLAVAGRNEK--KLQEVLEKVGEKTGTDLSSSVILIADSANEASLD----EMAKQ----ARVIVNCVGPYRFHGE 99 (423)
T ss_pred cccCceEEEecCCHH--HHHHHHHHHhhccCCCcccceEEEecCCCHHHHH----HHHhh----hEEEEeccccceecCc
Confidence 346689999999975 8999999998888766666889999888766544 45543 334433211 0 0122
Q ss_pred HHHhhhhhccCcEEEEecCCcccCCCChHHHHHhh
Q psy11642 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 192 (372)
Q Consensus 158 a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~ 192 (372)
+.-.+.-.....+| |+-=.|.|+|.|....
T Consensus 100 ~VVkacienG~~~v-----DISGEP~f~E~mq~kY 129 (423)
T KOG2733|consen 100 PVVKACIENGTHHV-----DISGEPQFMERMQLKY 129 (423)
T ss_pred HHHHHHHHcCCcee-----ccCCCHHHHHHHHHHH
Confidence 22222222233333 4455689999987655
No 233
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=38.94 E-value=1.5e+02 Score=29.41 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=50.6
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcch-HHHHHhhhhhc------cCcEEEEecCCcccCCCChHHHH
Q psy11642 117 IILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGL-IRTRSRGAKES------RGEVIVFLDAHCEVGLNWLPPLL 189 (372)
Q Consensus 117 IIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~-~~a~n~g~~~a------~gd~i~flD~D~~~~~~~L~~ll 189 (372)
||||-||.-++...+.|++++.. ++.. +|.|. .+|+..|+... ..|-|+++++-+.-+-.-++.+.
T Consensus 1 iv~VsN~~l~~~~~~~L~~~~~~------vi~R-~N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~~f 73 (498)
T PF05045_consen 1 IVFVSNSPLSEEDREKLKDLCDK------VIQR-ENEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSEMF 73 (498)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH------hEEe-ccCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHHHH
Confidence 46666666554444477666543 2222 56663 56677777653 47899999988876656699999
Q ss_pred HhhhcCCCEEE
Q psy11642 190 APIYSDRKIMT 200 (372)
Q Consensus 190 ~~~~~~~~~~v 200 (372)
+.+.+......
T Consensus 74 ~~~~~~~~Dfw 84 (498)
T PF05045_consen 74 ERMEARDVDFW 84 (498)
T ss_pred HHhccCCCeEE
Confidence 99987755543
No 234
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=38.67 E-value=2.2e+02 Score=27.59 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=56.0
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH-c--C-------CcEEEEecC------
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR-F--N-------GKVRLIRNT------ 150 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~-~--~-------~~v~~i~~~------ 150 (372)
.+|.-+.. ..|...|+++.+.... ||+|+-.... + .+.++... + + ..+.+....
T Consensus 28 llpv~g~~-plId~~L~~l~~~Gi~----~i~iv~~~~~-~----~i~~~l~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (436)
T PLN02241 28 AVPIGGNY-RLIDIPMSNCINSGIN----KIYVLTQFNS-A----SLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEK 97 (436)
T ss_pred ceEeCCcc-eEehHHHHHHHhCCCC----EEEEEeccCH-H----HHHHHHhccCCCCCCcccCCCCEEEcCCcccCCCC
Confidence 55666653 4777788888764432 6766654322 2 23333322 1 1 113332211
Q ss_pred -CCcchHHHHHhhhhhcc------CcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 151 -EREGLIRTRSRGAKESR------GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 151 -~n~G~~~a~n~g~~~a~------gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
...|.+.|...++..+. .+.++++.+|..... -+..+++...+...
T Consensus 98 ~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~-dl~~ll~~h~~~~a 150 (436)
T PLN02241 98 GWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRM-DYMDFVQKHRESGA 150 (436)
T ss_pred ccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEcc-CHHHHHHHHHHcCC
Confidence 23677777755544332 467889999997654 57777777665544
No 235
>PHA01631 hypothetical protein
Probab=38.38 E-value=61 Score=26.66 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=35.5
Q ss_pred ccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCC---CcchHHHHHhhhhh---ccCcEEEEecCCcccCC
Q psy11642 114 LEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE---REGLIRTRSRGAKE---SRGEVIVFLDAHCEVGL 182 (372)
Q Consensus 114 ~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~---n~G~~~a~n~g~~~---a~gd~i~flD~D~~~~~ 182 (372)
.+..++||+.=.+-|.. .++.+ ..++..+.... +.-.|..+-..+.. ..-|+++|+|+|..+++
T Consensus 17 ~~D~V~VD~~~~~~~~c-~~~~~----~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn 86 (176)
T PHA01631 17 DFDYVVVDKTFNDMTEC-QIPKY----QEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPN 86 (176)
T ss_pred cccEEEEcccccccccc-ccccc----CCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecC
Confidence 34899999876643321 11111 12333332211 23345555555443 45788899999999876
No 236
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=38.33 E-value=1.9e+02 Score=27.93 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=59.2
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH-c--C---Cc-EEEEecCC-------C
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR-F--N---GK-VRLIRNTE-------R 152 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~-~--~---~~-v~~i~~~~-------n 152 (372)
.+|.-|.. ..|..+|..+.+.... +|+|+-.... + .++++... + + .. +.++.... .
T Consensus 28 Llpi~gk~-plI~~~L~~l~~~Gi~----~vivv~~~~~-~----~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~ 97 (429)
T PRK02862 28 AVPLAGKY-RLIDIPISNCINSGIN----KIYVLTQFNS-A----SLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWF 97 (429)
T ss_pred eeEECCee-EEeHHHHHHHHHCCCC----EEEEEecCCH-H----HHHHHHhcCcCccccCCCEEEEeCCcccCCCCccc
Confidence 66777764 4788888888764332 6776655322 2 23333321 1 0 01 22222111 1
Q ss_pred cchHHHHHhhhhhcc---CcEEEEecCCcccCCCChHHHHHhhhcCCC
Q psy11642 153 EGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197 (372)
Q Consensus 153 ~G~~~a~n~g~~~a~---gd~i~flD~D~~~~~~~L~~ll~~~~~~~~ 197 (372)
.|.+.|...+..... .+.++++.+|.... .-+..+++.+.+...
T Consensus 98 lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~-~dl~~ll~~h~~~~a 144 (429)
T PRK02862 98 QGTADAVRKYLWHFQEWDVDEYLILSGDQLYR-MDYRLFVQHHRETGA 144 (429)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEecCCEEEe-CCHHHHHHHHHHcCC
Confidence 688888888877653 36789999999664 567888887765544
No 237
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=37.25 E-value=2.1e+02 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=13.9
Q ss_pred ccEEEEEeCCCCchhhHHHHHHHH
Q psy11642 114 LEEIILVDDFSSKADLDQKLEDYI 137 (372)
Q Consensus 114 ~~eIIvVDd~S~d~t~~~~l~~~~ 137 (372)
...||++-||-..+..+ ..+.+.
T Consensus 100 ~~~iillTDG~~~~~~~-~~~~~~ 122 (171)
T cd01461 100 VPQIILLTDGEVTNESQ-ILKNVR 122 (171)
T ss_pred ccEEEEEeCCCCCCHHH-HHHHHH
Confidence 34899999987644322 444443
No 238
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=37.07 E-value=3.5e+02 Score=25.14 Aligned_cols=114 Identities=12% Similarity=0.041 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHH---HcCCcEEEEecCCCcchHHHHHhhhhhcc-
Q psy11642 92 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGAKESR- 167 (372)
Q Consensus 92 n~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~---~~~~~v~~i~~~~n~G~~~a~n~g~~~a~- 167 (372)
... +.|+.|+..+....... +++||-+- +....+.+++.+ ..... ++--+....-+.|.-.++..+.
T Consensus 32 ~~~-Sllq~T~~R~~~l~~~~---~~~vVtne---~~~f~v~eql~e~~~~~~~~--illEP~gRnTApAIA~aa~~~~~ 102 (333)
T COG0836 32 GDL-SLLQQTVKRLAFLGDIE---EPLVVTNE---KYRFIVKEQLPEIDIENAAG--IILEPEGRNTAPAIALAALSATA 102 (333)
T ss_pred CCC-cHHHHHHHHHhhcCCcc---CeEEEeCH---HHHHHHHHHHhhhhhccccc--eEeccCCCCcHHHHHHHHHHHHH
Confidence 344 79999999887744322 88888653 223323334332 21112 4445566666777766666553
Q ss_pred --C-cEEEEecCCcccCC-CChHHHHH----hhhcCCCEEEeeeeecccCCcceee
Q psy11642 168 --G-EVIVFLDAHCEVGL-NWLPPLLA----PIYSDRKIMTVPVIDGIDYQTWEFR 215 (372)
Q Consensus 168 --g-d~i~flD~D~~~~~-~~L~~ll~----~~~~~~~~~v~p~i~~~~~~~~~~~ 215 (372)
+ ..+++|=+|-.+.. ..+.+.+. ...++ ..++.++......+.+-|.
T Consensus 103 ~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g-~lVTfGI~Pt~PeTGYGYI 157 (333)
T COG0836 103 EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEG-GIVTFGIPPTRPETGYGYI 157 (333)
T ss_pred hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcC-CEEEEecCCCCCccCccee
Confidence 2 37888888877644 34443333 33333 4555455444444444443
No 239
>PLN00176 galactinol synthase
Probab=36.43 E-value=1.1e+02 Score=28.54 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=21.1
Q ss_pred HhhhhhccCcEEEEecCCcccCCCChHHHHHh
Q psy11642 160 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 160 n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~ 191 (372)
-...+....+-+++||+|+++.. -|.+|.+.
T Consensus 105 l~iw~l~~ydkvlyLDaD~lv~~-nid~Lf~~ 135 (333)
T PLN00176 105 LRIWEFVEYSKMIYLDGDIQVFE-NIDHLFDL 135 (333)
T ss_pred hhhccccccceEEEecCCEEeec-ChHHHhcC
Confidence 33445567889999999999855 34555443
No 240
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=36.26 E-value=1.9e+02 Score=27.13 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec-CCCcchHHHHHhhhhhccCcEEEEe
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-TEREGLIRTRSRGAKESRGEVIVFL 174 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~-~~n~G~~~a~n~g~~~a~gd~i~fl 174 (372)
..+...++.+.... .+|+|+-+.+.. . ... . ..+.++.+ ....|...+.-.|++.+..+.++++
T Consensus 187 pLl~~~ie~l~~~~-----~~ViVv~~~~~~---~----~~~--~-~~v~~I~D~~~~~GPlagI~aaL~~~~~~~~lVl 251 (346)
T PRK14500 187 PHAQYLYDLLAKYC-----EQVFLSARPSQW---Q----GTP--L-ENLPTLPDRGESVGPISGILTALQSYPGVNWLVV 251 (346)
T ss_pred cHHHHHHHHHHhhC-----CEEEEEeCchHh---h----hcc--c-cCCeEEeCCCCCCChHHHHHHHHHhCCCCCEEEE
Confidence 56777776655431 167776542210 0 010 0 13445443 3346999999999998876667889
Q ss_pred cCCcc-cCCCChHHHHHhhh
Q psy11642 175 DAHCE-VGLNWLPPLLAPIY 193 (372)
Q Consensus 175 D~D~~-~~~~~L~~ll~~~~ 193 (372)
=+|.. ++++.+..+++.+.
T Consensus 252 ~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 252 ACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred ECCcCCCCHHHHHHHHHhhh
Confidence 99996 57799999998764
No 241
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=34.46 E-value=2.8e+02 Score=24.85 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=59.9
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHH
Q psy11642 81 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS 160 (372)
Q Consensus 81 ~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n 160 (372)
.|.|-|||-+.|.+ ++=.|.++|+......- +=-+.-.|.+. .. |.+.+ ++.++-.....-.-.|.+
T Consensus 34 ~~~VEVVllSRNsp-dTGlRv~nSI~hygL~I---tR~~ft~G~~~--~~-----Yl~af--~v~LFLSan~~DV~~Ai~ 100 (264)
T PF06189_consen 34 DPLVEVVLLSRNSP-DTGLRVFNSIRHYGLDI---TRAAFTGGESP--YP-----YLKAF--NVDLFLSANEDDVQEAID 100 (264)
T ss_pred CCceEEEEEecCCH-HHHHHHHHhHHHhCCcc---eeeeecCCCCH--HH-----HHHHh--CCceEeeCCHHHHHHHHH
Confidence 47899999999998 88889999997655321 23333333321 12 33333 455554443455677888
Q ss_pred hhhhhcc------------CcEEEEecCCcccCCCChHHHH
Q psy11642 161 RGAKESR------------GEVIVFLDAHCEVGLNWLPPLL 189 (372)
Q Consensus 161 ~g~~~a~------------gd~i~flD~D~~~~~~~L~~ll 189 (372)
.|+..|. .++=+-+|.|.++..|-=|...
T Consensus 101 ~G~~Aa~v~~~~~~~~~~~~qlRIAFDgDaVLfsDesE~vy 141 (264)
T PF06189_consen 101 AGIPAATVLPSPPDDDESDDQLRIAFDGDAVLFSDESERVY 141 (264)
T ss_pred cCCCcEEeecCCCCCCCCCCceEEEEcCCeEeecCcchHhH
Confidence 8877652 3466777888777655554443
No 242
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=32.79 E-value=2.6e+02 Score=26.46 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=53.4
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCc-----h-hhHHHHHHHHHHcCCcEEEEecCC--Ccch---
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSK-----A-DLDQKLEDYIQRFNGKVRLIRNTE--REGL--- 155 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d-----~-t~~~~l~~~~~~~~~~v~~i~~~~--n~G~--- 155 (372)
++.+.||- +.|+--|+.|.... ...|||+-..|- + ...+..+.+ +.+..+|.++..+. ..|-
T Consensus 84 ~~~f~~El-DlLeiRl~eL~~vV-----D~FVIvEs~~Tf~G~~KpL~f~~~~~~f-~~~~~KIiy~~l~~~~~~g~~~~ 156 (356)
T PF04724_consen 84 CFLFNNEL-DLLEIRLNELYDVV-----DYFVIVESNRTFTGKPKPLYFAENKERF-AFFHDKIIYVTLDDPPEKGRKDP 156 (356)
T ss_pred EEEeCChH-HHHHHHHHHhhCcc-----eEEEEEEECCCcCCCCCCccHHHHHHHH-HhhhcceEEEEecCcCCCCCCch
Confidence 34445654 88887787775433 266777754442 1 111111222 22334666554432 2232
Q ss_pred ----HHHHHhh---h---hhccCcEEEEecCCcccCCCChHHHHH
Q psy11642 156 ----IRTRSRG---A---KESRGEVIVFLDAHCEVGLNWLPPLLA 190 (372)
Q Consensus 156 ----~~a~n~g---~---~~a~gd~i~flD~D~~~~~~~L~~ll~ 190 (372)
...||+. + ....+|+|++-|.|-++.++.|..|-.
T Consensus 157 w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~ 201 (356)
T PF04724_consen 157 WDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRW 201 (356)
T ss_pred hHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHh
Confidence 2233432 1 223589999999999999988887743
No 243
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=31.97 E-value=1.1e+02 Score=25.74 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=29.8
Q ss_pred CceEEEEEecCCChhHH-HHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHH
Q psy11642 82 PKASVILVFHNEGFSSL-MRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ 138 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l-~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~ 138 (372)
+.|+.|+.+|......+ .+.++.+++ ....||++||.+-.++ ++.++++.+
T Consensus 113 ~~V~rVvV~ykDRL~RFGfe~le~~~~----a~~~eivvv~~~e~~~--eELveDlis 164 (193)
T COG2452 113 NSVRRVVVSYKDRLNRFGFELVEAVCK----AHNVEIVVVNQEDKDS--EELVEDLVS 164 (193)
T ss_pred CceeEEEEEccchHhHHhHHHHHHHHH----hcCcEEEEecCCCCCH--HHHHHHHHH
Confidence 67999999997542211 222333332 2234999998776653 345666553
No 244
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.96 E-value=3.5e+02 Score=23.73 Aligned_cols=159 Identities=10% Similarity=0.086 Sum_probs=78.4
Q ss_pred CCccccCCHHHHHhhhhhhhccCcceeeecccCCCCCCCCCCccccccccCCCCCCceEEEEEecCCChhHHHHHHHHHH
Q psy11642 27 GGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSII 106 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~~~~~r~~~~~r~~~~~~~~~~~~~p~vSVIIp~yn~~~~~l~~~l~Sl~ 106 (372)
+..+..++.+++.++-+.+.+.|+...---........|-.......-.......+.+-+.+-+.|.. +.+.+..++
T Consensus 10 q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~-~~i~~a~~~-- 86 (265)
T cd03174 10 QSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNRE-KGIERALEA-- 86 (265)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCch-hhHHHHHhC--
Confidence 34445578888887777777888765432212111112222111111011112222333433344543 444444433
Q ss_pred ccCCcCCccEEEEEeCCCC--------------chhhHHHHHHHHHHcCCcEEEEe---cC--CCcchHHHHHhhhhhcc
Q psy11642 107 KRTPAQYLEEIILVDDFSS--------------KADLDQKLEDYIQRFNGKVRLIR---NT--EREGLIRTRSRGAKESR 167 (372)
Q Consensus 107 ~qt~~~~~~eIIvVDd~S~--------------d~t~~~~l~~~~~~~~~~v~~i~---~~--~n~G~~~a~n~g~~~a~ 167 (372)
.. ..|.+.+++|+ -+...+.++ ++++.+..+.+.- .. .+.......-.-+..+.
T Consensus 87 --g~----~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~-~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g 159 (265)
T cd03174 87 --GV----DEVRIFDSASETHSRKNLNKSREEDLENAEEAIE-AAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG 159 (265)
T ss_pred --Cc----CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHH-HHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC
Confidence 21 27888888772 122221222 2333333333322 11 22223333333344456
Q ss_pred CcEEEEecCCcccCCCChHHHHHhhhcC
Q psy11642 168 GEVIVFLDAHCEVGLNWLPPLLAPIYSD 195 (372)
Q Consensus 168 gd~i~flD~D~~~~~~~L~~ll~~~~~~ 195 (372)
.+.|.+.|..-...|.-+..++..+.+.
T Consensus 160 ~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 160 ADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred CCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 7899999999999999999999888764
No 245
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=30.94 E-value=77 Score=22.79 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=31.7
Q ss_pred HHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHH
Q psy11642 99 MRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS 160 (372)
Q Consensus 99 ~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n 160 (372)
..++.+|.+..- .-|||-.|.| +++.. .+..+++.+.-++....+....|.+-+..
T Consensus 14 ~~vlkaIk~gka----kLViiA~Da~-~~~~k-~i~~~c~~~~Vpv~~~~t~~eLG~A~G~~ 69 (82)
T PRK13601 14 KQTLKAITNCNV----LQVYIAKDAE-EHVTK-KIKELCEEKSIKIVYIDTMKELGVMCGID 69 (82)
T ss_pred HHHHHHHHcCCe----eEEEEeCCCC-HHHHH-HHHHHHHhCCCCEEEeCCHHHHHHHHCCc
Confidence 356667765432 1566677766 46655 88888887655554444433444443333
No 246
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=30.90 E-value=73 Score=22.84 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=30.2
Q ss_pred HHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchH
Q psy11642 98 LMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLI 156 (372)
Q Consensus 98 l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~ 156 (372)
..+++.+|.+..- . -|||..|.|+ .+.. .+..+++.+.-++..+......|.+
T Consensus 16 ~~~v~kai~~gka-k---lViiA~D~~~-~~~~-~i~~~c~~~~Vp~~~~~s~~eLG~a 68 (82)
T PRK13602 16 TKQTVKALKRGSV-K---EVVVAEDADP-RLTE-KVEALANEKGVPVSKVDSMKKLGKA 68 (82)
T ss_pred HHHHHHHHHcCCe-e---EEEEECCCCH-HHHH-HHHHHHHHcCCCEEEECCHHHHHHH
Confidence 3456677765432 1 4666666665 5555 8888888865455555433334443
No 247
>PRK06683 hypothetical protein; Provisional
Probab=30.85 E-value=72 Score=22.89 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhh
Q psy11642 99 MRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG 162 (372)
Q Consensus 99 ~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g 162 (372)
..++.+|.+..- .-|||-.|.+. .+.+ .+..+++.+.-.+..+......|.+-+...+
T Consensus 17 ~~v~kaik~gka----klViiA~Da~~-~~~~-~i~~~~~~~~Vpv~~~~t~~eLG~A~G~~~~ 74 (82)
T PRK06683 17 KRTLEAIKNGIV----KEVVIAEDADM-RLTH-VIIRTALQHNIPITKVESVRKLGKVAGIQVG 74 (82)
T ss_pred HHHHHHHHcCCe----eEEEEECCCCH-HHHH-HHHHHHHhcCCCEEEECCHHHHHHHhCCccc
Confidence 456677754332 15666666665 4555 7888888766556555544445544443333
No 248
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=29.79 E-value=3.9e+02 Score=23.52 Aligned_cols=196 Identities=15% Similarity=0.223 Sum_probs=103.3
Q ss_pred ceEEEEEecCCC-------------hhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEec
Q psy11642 83 KASVILVFHNEG-------------FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN 149 (372)
Q Consensus 83 ~vSVIIp~yn~~-------------~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~ 149 (372)
.+.||||++=.. ...+.++.+...+.. ..+|+|.-| |+ .+.+.++.++..+..-+.
T Consensus 3 ~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s~----~~rvvVATD---de----~I~~av~~~G~~avmT~~ 71 (247)
T COG1212 3 KFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKSG----ADRVVVATD---DE----RIAEAVQAFGGEAVMTSK 71 (247)
T ss_pred ceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHcC----CCeEEEEcC---CH----HHHHHHHHhCCEEEecCC
Confidence 466777775321 135556665554332 226777654 23 233344555555655555
Q ss_pred CCCcchHHHHHhhhhhc--cCcEEEEecCCcc-cCCCChHHHHHhhhcCCCEEEeeeeecccCCc---ceeeeccCCCCc
Q psy11642 150 TEREGLIRTRSRGAKES--RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQT---WEFRSVYEPDHH 223 (372)
Q Consensus 150 ~~n~G~~~a~n~g~~~a--~gd~i~flD~D~~-~~~~~L~~ll~~~~~~~~~~v~p~i~~~~~~~---~~~~~~~~~~~~ 223 (372)
..+.|--+..-...+.. ..++|+=+-.|.- ++|.-+..+++.+.+....++++.....+... -.......+..
T Consensus 72 ~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~- 150 (247)
T COG1212 72 DHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKE- 150 (247)
T ss_pred CCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCC-
Confidence 56666444333322222 4689999999985 57789999999998876666554332222111 00001101100
Q ss_pred cccccccccccccCCCcHHHHhhccCCCCcccCccccccchhccHHHHHHhcCCCCCCcccchhhHHHH--HHHHHcCCe
Q psy11642 224 YRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELS--FKIWMCGGS 301 (372)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irr~~~~~iGgfd~~~~~~g~ED~dl~--~r~~~~G~~ 301 (372)
...+.|.+-.+|..... ... .++ .-+=|..++|+.++++...+.+... |+.|-. +|+...|.+
T Consensus 151 -----g~ALYFSRs~iP~~rd~--~~~-~p~---l~HIGIYayr~~~L~~f~~~~ps~L----E~~E~LEQLR~Le~G~k 215 (247)
T COG1212 151 -----GYALYFSRAPIPYGRDN--FGG-TPF---LRHIGIYAYRAGFLERFVALKPSPL----EKIESLEQLRVLENGEK 215 (247)
T ss_pred -----CcEEEEEcCCCCCcccc--cCC-cch---hheeehHHhHHHHHHHHHhcCCchh----HHHHHHHHHHHHHcCCe
Confidence 11223333333322100 000 111 1123567899999999888777653 555543 567778999
Q ss_pred EEEE
Q psy11642 302 IEWV 305 (372)
Q Consensus 302 i~~~ 305 (372)
|...
T Consensus 216 I~v~ 219 (247)
T COG1212 216 IHVE 219 (247)
T ss_pred eEEE
Confidence 8664
No 249
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=29.61 E-value=1.5e+02 Score=22.94 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=47.2
Q ss_pred HHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhccCcEEEEecC
Q psy11642 97 SLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176 (372)
Q Consensus 97 ~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~gd~i~flD~ 176 (372)
-+..++..|.+.. .. -|+|..|.+..+... .+..+++.+.-.+.++.+....|.+.+.+. ...+...|.
T Consensus 31 G~~e~~Kai~~g~-a~---LVviA~Dv~P~~~~~-~l~~lc~~~~vpyv~V~sk~~LG~a~g~~~------~~vv~i~~~ 99 (116)
T COG1358 31 GTNEVTKAIERGK-AK---LVVIAEDVSPEELVK-HLPALCEEKNVPYVYVGSKKELGKAVGKEV------RKVVAIVDK 99 (116)
T ss_pred hHHHHHHHHHcCC-Cc---EEEEecCCCHHHHHH-HHHHHHHhcCCCEEEeCCHHHHHHHhCCCc------ceeEEEeeh
Confidence 3455666665532 22 688888888767666 888888876555666655544544333322 445666665
Q ss_pred CcccCCCChHHHHHh
Q psy11642 177 HCEVGLNWLPPLLAP 191 (372)
Q Consensus 177 D~~~~~~~L~~ll~~ 191 (372)
... ++++.+++.
T Consensus 100 ~~~---~~~~~l~~~ 111 (116)
T COG1358 100 GFA---KKLEDLVEK 111 (116)
T ss_pred hhh---hHHHHHHHH
Confidence 543 555555543
No 250
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=29.56 E-value=94 Score=29.24 Aligned_cols=102 Identities=15% Similarity=0.066 Sum_probs=53.7
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHH---cCCc------EEEEecCC-Cc--c
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGK------VRLIRNTE-RE--G 154 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~---~~~~------v~~i~~~~-n~--G 154 (372)
.+|.-|.. ..|...|+.+.+.... +|+|+-..-.++ .++++... ++.. +.++.++. .. |
T Consensus 27 LlpV~gk~-PlIe~~l~~L~~~Gi~----~I~iv~~~~~~~----~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg 97 (369)
T TIGR02092 27 SLPFGGRY-RLIDFPLSNMVNAGIR----NVFIFFKNKERQ----SLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEG 97 (369)
T ss_pred ccccCCee-eEEEEEhhhhhccCCC----EEEEEeCCCcHH----HHHHHHhCCCCCCcccccCcEEEEeccCCCCcccC
Confidence 45566762 3777778887775432 677666542221 33334322 1111 12222333 22 3
Q ss_pred hHHHHHhhhhhc---cCcEEEEecCCcccCCCChHHHHHhhhcCCCE
Q psy11642 155 LIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198 (372)
Q Consensus 155 ~~~a~n~g~~~a---~gd~i~flD~D~~~~~~~L~~ll~~~~~~~~~ 198 (372)
-+.+...+.+.. ..+.++++++|..... -|..|++...+....
T Consensus 98 ~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~-dl~~ll~~h~~~~a~ 143 (369)
T TIGR02092 98 GKRYFSQNLEFLKRSTSEYTVVLNSHMVCNI-DLKAVLKYHEETGKD 143 (369)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCCEEEec-CHHHHHHHHHHcCCC
Confidence 333444444443 2478999999986554 467777766554443
No 251
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=28.31 E-value=6e+02 Score=25.25 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=52.2
Q ss_pred CCCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCC--cEEEEecCCCcc--h
Q psy11642 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG--KVRLIRNTEREG--L 155 (372)
Q Consensus 80 ~~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~--~v~~i~~~~n~G--~ 155 (372)
..+++.|++-+|-. +.+.+.+..+.+.. ... .++|--+.... .+ .+++...+.+. ++.+... +|.| +
T Consensus 263 ~~~kiav~lHv~Y~--DLl~E~l~~l~~~p-~~~--Dl~ITt~~~~~--~~-~i~~~l~~~~~~~~~~v~vv-~NrGRDi 333 (498)
T PF05045_consen 263 SKKKIAVHLHVFYP--DLLEEILDYLANIP-FPY--DLFITTDSEEK--KE-EIEEILAKRPGFKNAEVRVV-ENRGRDI 333 (498)
T ss_pred CCCcEEEEEEEEcH--hhHHHHHHHHHhCC-CCe--EEEEECCchhh--HH-HHHHHHHhccCCCceEEEEe-CCCCccH
Confidence 44689999999885 47778887765543 333 77776433222 22 55555533332 4555444 5555 2
Q ss_pred HHHH---HhhhhhccCcEEEEecCCcccC
Q psy11642 156 IRTR---SRGAKESRGEVIVFLDAHCEVG 181 (372)
Q Consensus 156 ~~a~---n~g~~~a~gd~i~flD~D~~~~ 181 (372)
+.-. ...+.....|+|+.+.+--...
T Consensus 334 ~pfLv~~~~~l~~~~YD~v~~~HtKKS~~ 362 (498)
T PF05045_consen 334 LPFLVGLKDELLDSKYDYVCHLHTKKSPH 362 (498)
T ss_pred HHHHHHHHHHhccCCccEEEEEEcccCcC
Confidence 2222 1222225689999988765443
No 252
>PF11181 YflT: Heat induced stress protein YflT
Probab=26.73 E-value=1.1e+02 Score=22.93 Aligned_cols=33 Identities=6% Similarity=0.183 Sum_probs=26.7
Q ss_pred EEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeC
Q psy11642 87 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDD 122 (372)
Q Consensus 87 IIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd 122 (372)
+|=+|+.. ..+...|+.|.++-|... +|.|+-.
T Consensus 2 ~Igv~~~~-~E~~~~I~~L~~~Gy~~d--dI~Vva~ 34 (103)
T PF11181_consen 2 VIGVYDNE-EEALSAIEELKAQGYSED--DIYVVAK 34 (103)
T ss_pred EEEEECCH-HHHHHHHHHHHHcCCCcc--cEEEEEc
Confidence 45566666 799999999999999877 8888863
No 253
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=25.56 E-value=89 Score=22.61 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=37.1
Q ss_pred HHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhh
Q psy11642 98 LMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA 163 (372)
Q Consensus 98 l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~ 163 (372)
+.+++..|.+..- ..++|-.|.+.. -.. .+..++++..-.+.++......|.+-+...++
T Consensus 18 ~kqt~Kai~kg~~----~~v~iA~Da~~~-vv~-~l~~lceek~Ip~v~V~s~~~LGkAcgi~V~a 77 (84)
T PRK13600 18 LKETLKALKKDQV----TSLIIAEDVEVY-LMT-RVLSQINQKNIPVSFFKSKHALGKHVGINVNA 77 (84)
T ss_pred HHHHHHHHhcCCc----eEEEEeCCCCHH-HHH-HHHHHHHHcCCCEEEECCHHHHHHHhCCCcCe
Confidence 5567777764332 278888887754 334 77788888665666665555566555444443
No 254
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=25.49 E-value=1.3e+02 Score=26.13 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=50.8
Q ss_pred EEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhh
Q psy11642 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 164 (372)
Q Consensus 85 SVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~ 164 (372)
.|||+.+|++ .|.++. ++. |.. .-.|+|=++. ++..+.++.+.++|| .+-++-+ |-|+-+..+.-
T Consensus 31 ~VIi~gR~e~--~L~e~~----~~~-p~~--~t~v~Dv~d~-~~~~~lvewLkk~~P-~lNvliN--NAGIqr~~dlt-- 95 (245)
T COG3967 31 TVIICGRNEE--RLAEAK----AEN-PEI--HTEVCDVADR-DSRRELVEWLKKEYP-NLNVLIN--NAGIQRNEDLT-- 95 (245)
T ss_pred EEEEecCcHH--HHHHHH----hcC-cch--heeeecccch-hhHHHHHHHHHhhCC-chheeee--cccccchhhcc--
Confidence 6899999865 554443 333 333 3344444444 445547777777776 6766654 33332222211
Q ss_pred hccCcEEEEecCCcccCCCCh------HHHHHhhhcCCCEEEe
Q psy11642 165 ESRGEVIVFLDAHCEVGLNWL------PPLLAPIYSDRKIMTV 201 (372)
Q Consensus 165 ~a~gd~i~flD~D~~~~~~~L------~~ll~~~~~~~~~~v~ 201 (372)
+.=..+-|.+.++.-+.+ ..++..+.+.+...++
T Consensus 96 ---~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~II 135 (245)
T COG3967 96 ---GAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATII 135 (245)
T ss_pred ---CCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEE
Confidence 222223334445544444 3456666666654443
No 255
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=24.97 E-value=3.6e+02 Score=23.43 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=26.5
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCC-cCCccEEEEEeCCCCchhhHHHHHHHHHH
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTP-AQYLEEIILVDDFSSKADLDQKLEDYIQR 139 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~-~~~~~eIIvVDd~S~d~t~~~~l~~~~~~ 139 (372)
.|.||+|.++.. +....+.++.+... .++ .+++++...+.+...+.++.+...
T Consensus 1 ~igvi~p~~~~~--~~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~ 54 (268)
T cd06270 1 TIGLVVSDLDGP--FFGPLLSGVESVARKAGK--HLIITAGHHSAEKEREAIEFLLER 54 (268)
T ss_pred CEEEEEccccCc--chHHHHHHHHHHHHHCCC--EEEEEeCCCchHHHHHHHHHHHHc
Confidence 367888887654 44444444432221 123 666665433333333366666554
No 256
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=24.68 E-value=1e+02 Score=28.32 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=31.0
Q ss_pred hhccCcEEEEecCCcccCC-CChHHHHHhhhcCCCEEEe
Q psy11642 164 KESRGEVIVFLDAHCEVGL-NWLPPLLAPIYSDRKIMTV 201 (372)
Q Consensus 164 ~~a~gd~i~flD~D~~~~~-~~L~~ll~~~~~~~~~~v~ 201 (372)
+....+|++++++|..+.+ ..+.+++..++++...++.
T Consensus 115 ~~~~~~yivVvEddnT~~~~~~l~~~I~aM~~k~idilQ 153 (325)
T PF03213_consen 115 KDPEDKYIVVVEDDNTLRDITTLHPIIKAMKKKNIDILQ 153 (325)
T ss_pred ccCCCCeEEEEeCCCcccccHHHHHHHHHHHHcCceEEE
Confidence 3445799999999998855 8999999999988876544
No 257
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=24.00 E-value=1.1e+02 Score=31.60 Aligned_cols=49 Identities=20% Similarity=0.032 Sum_probs=36.3
Q ss_pred EEEEecC---CChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHH
Q psy11642 86 VILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 134 (372)
Q Consensus 86 VIIp~yn---~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~ 134 (372)
|.|+|-+ |+.-...+|+-|+++-.||....-+.|-|||.+.-|.....|
T Consensus 3 vFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~E 54 (720)
T PF03552_consen 3 VFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALME 54 (720)
T ss_pred eEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHH
Confidence 4555533 222356788999999999988889999999999888774433
No 258
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=23.94 E-value=5.2e+02 Score=23.01 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=47.6
Q ss_pred cCCHHHHHhhhhhhhccCcceeeecccCCCCCCCCCCccccccccCCCCCCceEEEEEec-CCChhHHHHHHHHHHccCC
Q psy11642 32 HLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFH-NEGFSSLMRTVHSIIKRTP 110 (372)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~n~~~s~~~~~~r~~~~~r~~~~~~~~~~~~~p~vSVIIp~y-n~~~~~l~~~l~Sl~~qt~ 110 (372)
.+.++.++.+.+..++.||---... |.+ + ......|.+|+|.. |.-+..+...+...+.+.
T Consensus 3 ~Vs~~Tr~rV~~~a~elgY~pn~~a-----~~l---~---------~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~- 64 (309)
T PRK11041 3 KVSQATRQRVEQAVLEVGYSPQSLG-----RNL---K---------RNESRTILVIVPDICDPFFSEIIRGIEVTAAEH- 64 (309)
T ss_pred cCCHHHHHHHHHHHHHHCCCcCHHH-----HHh---h---------cCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHC-
Confidence 4678889999999999999221111 000 0 01224689999865 333344455555544433
Q ss_pred cCCccEEEEEeCCCCchhhHHHHHHHHHH
Q psy11642 111 AQYLEEIILVDDFSSKADLDQKLEDYIQR 139 (372)
Q Consensus 111 ~~~~~eIIvVDd~S~d~t~~~~l~~~~~~ 139 (372)
++ .+++.+-....+...+.++.+...
T Consensus 65 -g~--~~~~~~~~~~~~~~~~~i~~l~~~ 90 (309)
T PRK11041 65 -GY--LVLIGDCAHQNQQEKTFVNLIITK 90 (309)
T ss_pred -CC--EEEEEeCCCChHHHHHHHHHHHHc
Confidence 23 666665443333333366666554
No 259
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=23.92 E-value=3.5e+02 Score=25.21 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=53.3
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCc-hhhHHHHHHHHHHcCCcEEEEecCCCcc---hHH
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSK-ADLDQKLEDYIQRFNGKVRLIRNTEREG---LIR 157 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d-~t~~~~l~~~~~~~~~~v~~i~~~~n~G---~~~ 157 (372)
.+|-+.+-+-.+-..+++..++|..+.-.++......|.-|.... +.++ +. . ..+++++..++..+ .+-
T Consensus 99 ~tIGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~-----l~-~-~r~~~V~~v~~~~~Wqd~sm 171 (337)
T PF03414_consen 99 ITIGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIE-----LG-P-GRRLKVFEVQEEKRWQDISM 171 (337)
T ss_dssp -EEEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS------------T-TEEEEEEE-SGGSSHHHHHH
T ss_pred ceEEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccc-----cC-C-CceeEEEEecccCCCccchh
Confidence 344444444465557899999998776666665555566655432 1111 11 1 12577776544444 222
Q ss_pred HHHhhhhh-------ccCcEEEEecCCcccCCCChHHHH
Q psy11642 158 TRSRGAKE-------SRGEVIVFLDAHCEVGLNWLPPLL 189 (372)
Q Consensus 158 a~n~g~~~-------a~gd~i~flD~D~~~~~~~L~~ll 189 (372)
.|-..+.. -..||++++|.|..+...+=.+.+
T Consensus 172 ~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F~~~vGvE~L 210 (337)
T PF03414_consen 172 MRMEMISEHIEQHIQHEVDYLFCMDVDMVFQDHVGVEIL 210 (337)
T ss_dssp HHHHHHHHHHHHCHHHH-SEEEEEESSEEE-S-B-GGG-
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEecceEEecccCHHHH
Confidence 33333321 248999999999999887776666
No 260
>COG5020 KTR1 Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=23.78 E-value=1.9e+02 Score=27.35 Aligned_cols=57 Identities=11% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHH
Q psy11642 81 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI 137 (372)
Q Consensus 81 ~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~ 137 (372)
.+..++|+.++|++...+.++|+||...--.++.+-.+..+|..=++.-.+.+.+..
T Consensus 80 r~natfv~L~RN~dL~~vl~Si~svE~rFNk~f~YpwvFLNdepFteeFk~~~~~~~ 136 (399)
T COG5020 80 RENATFVMLARNSDLEDVLSSIRSVEDRFNKNFHYPWVFLNDEPFTEEFKEATSDIT 136 (399)
T ss_pred CcccEEEEEEechhHHHHHHHHHHHHHHhhccCCCCeEEecCchhHHHHHHHHHHHh
Confidence 477999999999998899999999987765666667888888766555444444443
No 261
>KOG4472|consensus
Probab=23.78 E-value=1.9e+02 Score=27.35 Aligned_cols=57 Identities=11% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHH
Q psy11642 81 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI 137 (372)
Q Consensus 81 ~p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~ 137 (372)
.+..++|+.++|++...+.++|+||...--.++.+-.+..+|..=++.-.+.+.+..
T Consensus 80 r~natfv~L~RN~dL~~vl~Si~svE~rFNk~f~YpwvFLNdepFteeFk~~~~~~~ 136 (399)
T KOG4472|consen 80 RENATFVMLARNSDLEDVLSSIRSVEDRFNKNFHYPWVFLNDEPFTEEFKEATSDIT 136 (399)
T ss_pred CcccEEEEEEechhHHHHHHHHHHHHHHhhccCCCCeEEecCchhHHHHHHHHHHHh
Confidence 477999999999998899999999987765666667888888766555444444443
No 262
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=23.74 E-value=1.7e+02 Score=26.13 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=43.5
Q ss_pred EEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhccCcEEEEecCCcccCCCChHHHHHhhhcC
Q psy11642 117 IILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD 195 (372)
Q Consensus 117 IIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~~~~~~ 195 (372)
|||..|.|. .+....+..+++.+...+.++......|.+-+ ..+.-.|+++|.+.+- ...|..+++.+..+
T Consensus 152 VIIA~DVsP-ie~vk~LpaLCrk~~VPY~iVktKaeLG~AIG------kKtravVAItD~g~ed-~~~l~~lv~~~~~~ 222 (263)
T PTZ00222 152 VVIANNVDP-VELVLWMPNLCRANKIPYAIVKDMARLGDAIG------RKTATCVAITDVNAED-EAALKNLIRSVNAR 222 (263)
T ss_pred EEEeCCCCH-HHHHHHHHHHHHhcCCCEEEECCHHHHHHHHC------CCCCeEEEEeeCCccc-HHHHHHHHHHHHHh
Confidence 555556555 44442688899887656666655444443222 3345688888866533 35778888887654
No 263
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=22.70 E-value=1.1e+02 Score=28.76 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHH
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED 135 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~ 135 (372)
..+.+.|+.+++...++ .+|+|-||.+|+..--+++.
T Consensus 84 ~~I~~qld~vl~~~~~~---~~i~VsDGaeDE~vlPiIqS 120 (344)
T PF04123_consen 84 RKIAEQLDEVLSKFDPD---SAIVVSDGAEDERVLPIIQS 120 (344)
T ss_pred HHHHHHHHHHHHhCCCC---EEEEEecChhhhhhhHhhhc
Confidence 46788899999888766 89999999999876544443
No 264
>COG4639 Predicted kinase [General function prediction only]
Probab=22.57 E-value=1.7e+02 Score=24.14 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHh
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR 161 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~ 161 (372)
..+-+.+...++|....- ++-|+|---.+......+.+++..++..+..+......+...+||.
T Consensus 52 ~~~~~~l~~~l~qrl~~G--k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 52 ELVWDILYKQLEQRLRRG--KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK 115 (168)
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence 456667777777775555 8888887554444444888888888766666666677889999997
No 265
>PLN02718 Probable galacturonosyltransferase
Probab=22.06 E-value=3.5e+02 Score=27.43 Aligned_cols=106 Identities=13% Similarity=-0.031 Sum_probs=59.7
Q ss_pred CceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC---------
Q psy11642 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--------- 152 (372)
Q Consensus 82 p~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n--------- 152 (372)
...-|++.+=| - -...-+|.|++..+..+..+.+.||.|+-+.+... .+..+.......|.++.-+.-
T Consensus 312 ~~~Hia~~sDN-v-laasVvInSil~Ns~np~~ivFHVvTD~is~~~mk-~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~ 388 (603)
T PLN02718 312 DLYHYVVFSDN-V-LACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAIS-MWFLLNPPGKATIQILNIDDMNVLPADYNS 388 (603)
T ss_pred cceeEEEEcCC-c-eeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHH-HHHHhCCCCCcEEEEEecchhccccccchh
Confidence 34667666655 2 24555688888774333345888999988877665 444433322345666553210
Q ss_pred ---------cc----hHHHHHhhhhhc-cCcEEEEecCCcccCCCChHHHHHh
Q psy11642 153 ---------EG----LIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAP 191 (372)
Q Consensus 153 ---------~G----~~~a~n~g~~~a-~gd~i~flD~D~~~~~~~L~~ll~~ 191 (372)
.+ ....|-...+.- .-+-|++||+|+++.. -|+.|.+.
T Consensus 389 ~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~-DL~eL~~i 440 (603)
T PLN02718 389 LLMKQNSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQR-DLSRLWSL 440 (603)
T ss_pred hhhhccccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecC-CHHHHhcC
Confidence 00 011222222222 3578999999999855 46666654
No 266
>KOG3765|consensus
Probab=21.71 E-value=87 Score=29.87 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=33.5
Q ss_pred cCCCCCCcccchhhHHHHHHHHHcCCeEEEEcccEEEEeccCC
Q psy11642 275 GGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSF 317 (372)
Q Consensus 275 Ggfd~~~~~~g~ED~dl~~r~~~~G~~i~~~p~~~v~H~~~~~ 317 (372)
-.||+.+...|..=.-..+.+..+++...+.+.+...|.....
T Consensus 310 p~yd~ry~~~g~~~~s~~y~lc~~~Y~f~vl~~~f~vHk~~~~ 352 (386)
T KOG3765|consen 310 PAYDERYFPLGHNKQSQVYTLCGAEYEFLVLSLAFTVHKGLKE 352 (386)
T ss_pred cchhhhhCccccchHHHHHHHHhcCCeeeecccceeeecCccc
Confidence 3478888877655556777888899999999999999875543
No 267
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=21.39 E-value=5e+02 Score=23.54 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.0
Q ss_pred HHHHhhhhhccCcEEEEecCCcccCCCChHHHHH
Q psy11642 157 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 190 (372)
Q Consensus 157 ~a~n~g~~~a~gd~i~flD~D~~~~~~~L~~ll~ 190 (372)
-.+-.+.+....+=|++||+|+.+..+ +.+|..
T Consensus 81 ~tKl~~~~l~~y~kvlyLDaD~l~~~~-ideLf~ 113 (278)
T cd06914 81 LTKLRAFNQTEYDRIIYFDSDSIIRHP-MDELFF 113 (278)
T ss_pred HHHHHhccccceeeEEEecCChhhhcC-hHHHhc
Confidence 344445555678899999999987553 444443
No 268
>KOG0799|consensus
Probab=21.21 E-value=5.6e+02 Score=24.99 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=67.1
Q ss_pred ceEEEEEecCCChhHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCC---cc--hHH
Q psy11642 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER---EG--LIR 157 (372)
Q Consensus 83 ~vSVIIp~yn~~~~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n---~G--~~~ 157 (372)
.+..+..+|... +.+++.|.++-. +.+. =.|.||-.|+++... .++.+.+.++ +|.++..... .| .-.
T Consensus 104 ~~a~~~~v~kd~-~~verll~aiYh--PqN~--ycihvD~~s~~~fk~-~~~~L~~cf~-NV~v~~k~~~v~~~G~s~l~ 176 (439)
T KOG0799|consen 104 PAAFLRVVYKDY-EQVERLLQAIYH--PQNV--YCIHVDAKSPPEFRV-AMQQLASCFP-NVIVLPKRESVTYGGHSILA 176 (439)
T ss_pred ceEEEEeecccH-HHHHHHHHHHhC--CcCc--ceEEECCCCCHHHHH-HHHHHHhcCC-ceEEeccccceecCCchhhH
Confidence 467788888887 888888888753 3333 688899999987665 7888888775 7888853221 12 233
Q ss_pred HHHhhhhhc-----cCcEEEEecCCccc--CCCChHHHHHhhh
Q psy11642 158 TRSRGAKES-----RGEVIVFLDAHCEV--GLNWLPPLLAPIY 193 (372)
Q Consensus 158 a~n~g~~~a-----~gd~i~flD~D~~~--~~~~L~~ll~~~~ 193 (372)
|-..+++.. ..+|++.+=+.+.+ +.+-|.++++.+.
T Consensus 177 a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~ 219 (439)
T KOG0799|consen 177 AHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILR 219 (439)
T ss_pred HHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcC
Confidence 333333321 26777776666654 4466777777663
No 269
>PRK04017 hypothetical protein; Provisional
Probab=20.10 E-value=4.5e+02 Score=20.86 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHccCCcCCccEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhccCcEEEEec
Q psy11642 96 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 175 (372)
Q Consensus 96 ~~l~~~l~Sl~~qt~~~~~~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a~gd~i~flD 175 (372)
+.+...|+.|...+-.. -+|||..-++.. .|+++- .+ ..++.. .+.+........ ..-..++|+|.|
T Consensus 7 ~~~~e~i~~L~e~s~~g---~vIVVEGk~D~~----~L~~lG--v~--~~iI~t-~g~~~~~~~e~i-a~~~r~VIILTD 73 (132)
T PRK04017 7 ERFEEIIEELKEFSEAG---APIIVEGKRDVE----SLRKLG--VE--GEIIKV-SRTPLAEIAELI-ASRGKEVIILTD 73 (132)
T ss_pred HHHHHHHHHHHHhcCCC---CEEEEeCccHHH----HHHHcC--CC--ccEEEE-CCeecchHHHHH-HhcCCeEEEEEC
Confidence 56788888888777533 477777544322 333331 11 123322 223333333222 334468999999
Q ss_pred CCc
Q psy11642 176 AHC 178 (372)
Q Consensus 176 ~D~ 178 (372)
.|.
T Consensus 74 ~D~ 76 (132)
T PRK04017 74 FDR 76 (132)
T ss_pred CCc
Confidence 994
No 270
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=20.02 E-value=2.2e+02 Score=23.76 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCchhhHHHHHHHHHHcCCcEEEEecCCCcchHHHHHhhhhhc--cCcEEEEecCCc
Q psy11642 115 EEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES--RGEVIVFLDAHC 178 (372)
Q Consensus 115 ~eIIvVDd~S~d~t~~~~l~~~~~~~~~~v~~i~~~~n~G~~~a~n~g~~~a--~gd~i~flD~D~ 178 (372)
.|||||+.-++ +. .+++. ++ +.+|... ..++....-.-++.+ +-.+|+|.|+|.
T Consensus 3 kevIVVEGK~D--~~--~lk~~---~d--~~~I~T~-Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~ 58 (174)
T TIGR00334 3 KEIIVVEGKDD--QA--RIKQA---FD--VDVIETN-GSALKDETINLIKKAQKKQGVIILTDPDF 58 (174)
T ss_pred CeEEEEecchH--HH--HHHHh---cC--ceEEEEC-CCccCHHHHHHHHHHhhcCCEEEEeCCCC
Confidence 38888874332 22 23332 22 4555442 233333333333333 367999999984
Done!