RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11642
(372 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 432 bits (1113), Expect = e-153
Identities = 151/289 (52%), Positives = 199/289 (68%), Gaps = 11/289 (3%)
Query: 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV 144
SVI++FHNE S+L+RTVHS+I RTP + L+EIILVDDFS K +L LE+Y +++ KV
Sbjct: 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKV 60
Query: 145 RLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 204
+++R +REGLIR R GA+ + G+V+VFLD+HCEV + WL PLLA I +RK + P+I
Sbjct: 61 KVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPII 120
Query: 205 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLF 264
D ID T+E+R RG F+W + +K LPE E ++R+ + P +SPT AGGLF
Sbjct: 121 DVIDADTFEYRGSSGDA---RGGFDWSLHFKWLPLPEEE-RRRESPTAPIRSPTMAGGLF 176
Query: 265 AMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSFM-PYNFG 323
A+DR +FLELGGYD G+ +WGGEN ELSFK+W CGGSIE VPCSR+GH++R PY F
Sbjct: 177 AIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRKRKPYTFP 236
Query: 324 KLADRVKGPLITYNYKRVIETWFDEKHKAYFYTREPLAMFLDMGDISEQ 372
+ V NYKRV E W DE +K YFY P +D GD+SE+
Sbjct: 237 GGSGTVL-----RNYKRVAEVWMDE-YKEYFYKARPELRNIDYGDLSER 279
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 96.4 bits (240), Expect = 6e-24
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 19/187 (10%)
Query: 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV 144
SVI+ +NE L T+ S++ +T + EII+VDD S + E+Y + + +V
Sbjct: 1 SVIIPTYNEE-KYLEETLESLLNQTYKNF--EIIVVDD-GSTDGTVEIAEEYAKN-DPRV 55
Query: 145 RLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 204
R+IR E G R+ G K + G+ I FLDA EV +WL L+ + + + +
Sbjct: 56 RVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNGADIVIGSR 115
Query: 205 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLF 264
I+ +T + + ++ L + + + ++A
Sbjct: 116 VVINGETRLYG--------------RALRFELLLLLGKLGARSLGLKVLFLIGSNALYRR 161
Query: 265 AMDRAFF 271
+
Sbjct: 162 EVLEELL 168
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 65.2 bits (159), Expect = 8e-13
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 145
VI+ +NE L R + S++ +T + E+I+VDD S+ L + LE+Y ++ +V
Sbjct: 1 VIIPAYNEE-PYLERCLESLLAQTYPNF--EVIVVDDGSTDGTL-EILEEYAKKDP-RVI 55
Query: 146 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198
+ N E +GL R+ G K +RGE I+FLDA + +WL L+A + +D +
Sbjct: 56 RVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEA 108
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 64.4 bits (157), Expect = 2e-11
Identities = 69/284 (24%), Positives = 112/284 (39%), Gaps = 31/284 (10%)
Query: 34 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 93
P A R G G + ETS + R + D + + P +V++ N
Sbjct: 29 PAAARLLGGGRGGGLEVRDETS--AALLRRLLDSGVVHPR-PALLPSPPSVTVVVPVRNR 85
Query: 94 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTER 152
+ L R + +++ + E+I+VDD S + R VR+IR+ R
Sbjct: 86 P-AGLARLLAALLALDYPRDRLEVIVVDDGSEDP-----VPTRAARGARLPVRVIRHPRR 139
Query: 153 EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID-YQT 211
+G R+ GA+ +R E + F D+ WL LLA + P + + T
Sbjct: 140 QGPAAARNAGARAARTEFVAFTDSDVVPRPGWLRALLAHFDDPGVALVAPRVVALPAEDT 199
Query: 212 WEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFF 271
R YE R + G EA R Y P+ A + R
Sbjct: 200 RLAR--YE---AVRSSLDLG---------PEEAVVRPRGPVSY-VPSAA---LLVRRRAL 241
Query: 272 LELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR 315
LE+GG+D L V GE+ +L +++ GG + + P + + H +R
Sbjct: 242 LEVGGFDERLEV--GEDVDLCWRLCEAGGRVRYEPAAVVAHDHR 283
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 63.8 bits (155), Expect = 4e-11
Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 34/255 (13%)
Query: 76 DYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED 135
D LPK SVI+ +NE L T+ S++ + +Y E+I+VDD S + + LE+
Sbjct: 48 DADKLLPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY--EVIVVDD-GSTDETYEILEE 104
Query: 136 YIQRFNGKVRLIR-NTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 194
+ R+I + G + G K ++G+V+V LDA + L L++P
Sbjct: 105 LGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFED 164
Query: 195 DRKIMTV--PVID-GIDYQTWEFRS-VYEPDHHYRGIFEWGMLYKENELPEREAKKRKYN 250
V P I D R E +
Sbjct: 165 PPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGG--------------- 209
Query: 251 SEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI 310
+G A R+ E+GG+ + E+ +L+ ++ + G + +VP + I
Sbjct: 210 ----LISFLSGSSSAFRRSALEEVGGWLEDTI---TEDADLTLRLHLRGYRVVYVPEA-I 261
Query: 311 GHVYRSFMPYNFGKL 325
P +L
Sbjct: 262 VWTE---APETLKEL 273
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 61.9 bits (151), Expect = 5e-11
Identities = 53/251 (21%), Positives = 102/251 (40%), Gaps = 41/251 (16%)
Query: 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG 142
S+I+ NE + + S++ ++ + L EII+VD S+ + +++Y +
Sbjct: 1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTRE-IVQEYAAKDP- 57
Query: 143 KVRLIRNTEREGLIRT--RSRGAKESRGEVIVFLDAHCEVGLNWLPPLL-APIYSDRKIM 199
++RLI N I++ + G + SRG++I+ +DAH +++ L+ A + +
Sbjct: 58 RIRLIDN---PKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114
Query: 200 TVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYK---- 255
P+ ++ +++ G Y K
Sbjct: 115 GGPME--TIGESKFQKAIAVAQSSPLGS-----------------GGSAYRGGAVKIGYV 155
Query: 256 SPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYR 315
H G A R F ++GG+D L+ E+ EL++++ G I P R+ + R
Sbjct: 156 DTVHHG---AYRREVFEKVGGFDESLVR--NEDAELNYRLRKAGYKIWLSPDIRVYYYPR 210
Query: 316 SFMPYNFGKLA 326
S KLA
Sbjct: 211 S----TLKKLA 217
>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function
prediction only].
Length = 305
Score = 60.6 bits (147), Expect = 2e-10
Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 20/238 (8%)
Query: 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN 141
PK S+I+V +N G L+ + S+ +T + I++VD+ S+ D LE RF
Sbjct: 3 PKISIIIVTYNRG-EDLVECLASLAAQTY--PDDVIVVVDNGST----DGSLEALKARFF 55
Query: 142 GKVRLIRNTEREGLIRTRSRGAKESRGEV---IVFLDAHCEVGLNWLPPLLAPIYSDRKI 198
VRLI N E G +RG K + + ++ L+ V + L LL D
Sbjct: 56 PNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAA 115
Query: 199 MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPT 258
V + ++ RG G+ P E +S +
Sbjct: 116 GVVGPLIRNYDESLYI--------DRRGGESDGLTGGWRASPLLE-IAPDLSSYLEVVAS 166
Query: 259 HAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316
+G + R F ++GG+D ++ E+ +L + G I +VP + I H S
Sbjct: 167 LSGACLLIRREAFEKVGGFDERFFIY-YEDVDLCLRARKAGYKIYYVPDAIIYHKIGS 223
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 57.6 bits (140), Expect = 4e-10
Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 63/227 (27%)
Query: 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 145
+I+V +N L + S++ +T + E+I+VD+ S+ ++ ++ +VR
Sbjct: 1 IIIVNYN-SLEYLKACLDSLLAQTYPDF--EVIVVDNASTDGSVE-----LLRELFPEVR 52
Query: 146 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID 205
LIRN E G ++G +E++G+ ++ L+ V L LL D
Sbjct: 53 LIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDP--------- 103
Query: 206 GIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFA 265
+ G++ P +G
Sbjct: 104 -----------------------DVGIV----------------------GPKVSGAFLL 118
Query: 266 MDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312
+ R F E+GG+D ++ E+ +L + + G + +VP + I H
Sbjct: 119 VRREVFEEVGGFDEDFFLYY-EDVDLCLRARLAGYRVLYVPQAVIYH 164
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 59.3 bits (142), Expect = 6e-10
Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 14/278 (5%)
Query: 80 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR 139
+PK SV++ +NE L + S++ +T + EII+VDD S+ + +Y +
Sbjct: 1 MMPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGSTD-GTTEIAIEYGAK 56
Query: 140 FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 199
+ +V + N GL R+ G + +RG+ IVFLDA + L PL+A I
Sbjct: 57 -DVRVIRLINERNGGLGAARNAGLEYARGDYIVFLDAD-DQHPPELIPLVAAGGDGDYIA 114
Query: 200 TVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTH 259
+ D I + + + + + L R+A +S
Sbjct: 115 RLDDRDDIWLPRKLLSKLVKLLGNRLLGVLIPDGFGDLRLLVRDAVDGLRAFLEGRSRFL 174
Query: 260 AGGL---FAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316
L + R L Y G L K+ G + +
Sbjct: 175 RLLLRKLVLIRREVLEYLLLYRL----LGASKRVLLGKLLRLGLLLLDSKLKAVPLDLLL 230
Query: 317 FMPYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAYF 354
+ F L + L+ + + ++
Sbjct: 231 LLGL-FIALLSILLLLLLLLLRRLLGANLSEKGKPLLL 267
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 58.6 bits (142), Expect = 9e-10
Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 30/220 (13%)
Query: 85 SVIL-VFHNEGFSSLMRTVHSIIKRT---PAQYLEEIILVDDFSSKADLDQKLEDYIQRF 140
SVI+ V+ + +++ + S + R + EII+VD S + ++L+ I +
Sbjct: 1 SVIIPVYLSLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLSF-AKELKKIIAKN 59
Query: 141 NGKVRLIRNTERE--GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198
+ T ++ + R+RGA+ S + I FLD C + + L ++ +
Sbjct: 60 GAINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFLDVDCLISPDTLEKIIKHFQELQTN 119
Query: 199 ----MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPY 254
+ +P + + F S ++ I E +
Sbjct: 120 PNAFLALPCLYLSKEGSEIFLSDFKYLLREE-ILE------------------DAITGKS 160
Query: 255 KSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFK 294
A ++R FFL++GG+D GGE+FEL ++
Sbjct: 161 TFFALASSCILINRDFFLKIGGFDENFRGHGGEDFELLYR 200
>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 229
Score = 55.4 bits (134), Expect = 6e-09
Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 33/231 (14%)
Query: 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF- 140
P+ +V++ NE L RT+ SI+ + + E+I+V D S LD + +
Sbjct: 1 PRVAVVVPTWNED-KVLGRTLRSILAQDYPRL--EVIVVVDGSDDETLD-VARELAAAYP 56
Query: 141 NGKVRLIRNTEREGLIRTRSRGAKE----SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 196
+ +V ++R G ++R E + +++V LDA V + L LL S
Sbjct: 57 DVRVHVVRRPRPPG-PTGKARALNEALRAIKSDLVVLLDADSVVDPDTLRRLLPFFLSKG 115
Query: 197 KIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGML-YKENELPEREAKKRKYNSEPYK 255
+ + Q F + + L + L ++
Sbjct: 116 -------VGAV--QGPVF-----VLNLRTAVAPLYALEFALRHLRFMALRRA------LG 155
Query: 256 SPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVP 306
AG R+ E+GG+DPG L+ E+ EL ++ G +VP
Sbjct: 156 VAPLAGSGSLFRRSVLEEIGGFDPGFLLG--EDKELGLRLRRAGWRTAYVP 204
>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase
superfamily. The cellulose synthase (CESA) superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members include cellulose synthase catalytic subunit,
chitin synthase, glucan biosynthesis protein and other
families of CESA-like proteins. Cellulose synthase
catalyzes the polymerization reaction of cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues in plants, most algae, some bacteria
and fungi, and even some animals. In bacteria, algae and
lower eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of Glucan.
Length = 180
Score = 52.2 bits (126), Expect = 4e-08
Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 145
+I+ +NE + + RT+ S++ + E+I+VDD S D + LE+ + +V
Sbjct: 1 IIVPAYNEE-AVIERTIESLLALDYPKL--EVIVVDD-GSTDDTLEILEELAALYIRRVL 56
Query: 146 LIRNTEREGLIRTRS--RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198
++R+ E G + + G + ++G+++V LDA + + L L+ P ++D K+
Sbjct: 57 VVRDKENGG--KAGALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKV 109
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 49.2 bits (118), Expect = 8e-07
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGK-- 143
V++ NE +L R + S+ + E+ILVDD S+ D ++ K
Sbjct: 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHST----DGT-VQILEFAAAKPN 54
Query: 144 --VRLIRNTEREG-----LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 192
++++ N+ + T K ++G+ IV DA C V NWL +A I
Sbjct: 55 FQLKILNNSRVSISGKKNALTT---AIKAAKGDWIVTTDADCVVPSNWLLTFVAFI 107
>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
of the Glycosyltransferase 2 superfamily. DPM1 is the
catalytic subunit of eukaryotic dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. In higher eukaryotes,the enzyme has three
subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
dolichol phosphate and GDP-Man on the cytosolic surface
of the ER membrane by DPM synthase and then is flipped
onto the luminal side and used as a donor substrate. In
lower eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely fission
yeast, fungi, and animals, have no transmembrane region,
suggesting the existence of adapter molecules for
membrane anchoring. This family also includes bacteria
and archaea DPM1_like enzymes. However, the enzyme
structure and mechanism of function are not well
understood. The UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 185
Score = 46.8 bits (112), Expect = 4e-06
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD---QKLEDYIQRFNG 142
V++ +NE ++ V ++ Y EII+VDD S+ D + + R
Sbjct: 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGST----DGTAEIARELAAR-VP 54
Query: 143 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176
+VR+IR + G G K +RG+++V +DA
Sbjct: 55 RVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88
>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of
galactosyltransferase. This is the N-terminal domain of
a family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 78
Score = 43.0 bits (102), Expect = 8e-06
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 254 YKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI 310
+ GG+ A + FL++ G+ WGGE+ +L ++ + G IE +
Sbjct: 14 LPYKGYFGGVLAFSKEDFLKVNGFSNNFWGWGGEDDDLYARLLLAGLKIERPKFAIG 70
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 45.6 bits (109), Expect = 1e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 175
EII+VDD SK + ++ +R++ + G G +RG+ I+F D
Sbjct: 32 EIIVVDD-GSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90
Query: 176 A 176
A
Sbjct: 91 A 91
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. In lower eukaryotes, such
as Saccharomyces cerevisiae and Trypanosoma brucei, DPM
synthase consists of a single component (Dpm1p and
TbDpm1, respectively) that possesses one predicted
transmembrane region near the C terminus for anchoring
to the ER membrane. In contrast, the Dpm1 homologues of
higher eukaryotes, namely fission yeast, fungi, and
animals, have no transmembrane region, suggesting the
existence of adapter molecules for membrane anchoring.
This family also includes bacteria and archaea DPM1_like
enzymes. However, the enzyme structure and mechanism of
function are not well understood. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 224
Score = 41.4 bits (98), Expect = 3e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 175
EII+VDD S D ++ + + +VRLI + GL G K +RG+VIV +D
Sbjct: 29 EIIVVDDNS--PDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMD 86
Query: 176 A 176
A
Sbjct: 87 A 87
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 39.5 bits (93), Expect = 0.001
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 81 LPKASVILVFHNEGFSSLMRTVHSIIKRT---------PAQYLEEIILVDDFSSKADLDQ 131
LP ++I+ +NE ++I+ P LE II+V D S +
Sbjct: 28 LPTVTIIIPAYNE---------EAVIEAKLENLLALDYPRDRLE-IIVVSD-GSTDGTAE 76
Query: 132 KLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176
+Y + V+L+R ER G +R + GE++VF DA
Sbjct: 77 IAREYADK---GVKLLRFPERRGKAAALNRALALATGEIVVFTDA 118
>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins
are required for O-antigen biosynthesis. The rfbC gene
encodes a predicted protein of 1,276 amino acids, which
is required for O-antigen biosynthesis in Myxococcus
xanthus. It is a subfamily of Glycosyltransferase Family
GT2, which includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. These are enzymes that catalyze the
transfer of sugar moieties from activated donor
molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 202
Score = 38.7 bits (91), Expect = 0.002
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLE--EIILVDDFSSKADLDQKLEDYIQR 139
P S+++ +N L + S+ AQ E+ + DD S+ ++ + L+ Y +
Sbjct: 1 PLISIVMPVYNTPEKYLREAIESVR----AQTYPNWELCIADDASTDPEVKRVLKKYAAQ 56
Query: 140 FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 175
+ +++++ E G+ + + + GE + LD
Sbjct: 57 -DPRIKVVFREENGGISAATNSALELATGEFVALLD 91
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
eukaryotic DPM1. A family of bacterial enzymes related
to eukaryotic DPM1; Although the mechanism of eukaryotic
enzyme is well studied, the mechanism of the bacterial
enzymes is not well understood. The eukaryotic DPM1 is
the catalytic subunit of eukaryotic Dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. The enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 181
Score = 38.2 bits (90), Expect = 0.002
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 86 VILVFHNE--GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD---QKLEDYIQRF 140
+++ +NE L + ++++ Y EII VDD S+ D + L + R
Sbjct: 1 IVVPVYNEEENLPELYERLKAVLESLGYDY--EIIFVDDGST----DRTLEILRELAAR- 53
Query: 141 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176
+ +V++IR + G G +RG+ ++ +DA
Sbjct: 54 DPRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDA 89
>gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 214
Score = 38.0 bits (89), Expect = 0.004
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 175
E+I+ DD S+ ++ +++YI + + LIRN + G+ R + + G+ + F D
Sbjct: 29 ELIISDDGSTDGTVEI-IKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGDYVFFCD 87
>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
Length = 328
Score = 38.1 bits (89), Expect = 0.005
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 82 PKASVILVFHNEG--FSSLMRTVHSIIKRTPAQYLE--EIILVDDFSSKADLDQKLEDYI 137
PK S+I+ +N G F + M ++ AQ EII+V+D S+ + + + Y
Sbjct: 6 PKLSIIIPLYNAGKDFRAFMESLI-------AQTWTALEIIIVNDGSTDNSV-EIAKHYA 57
Query: 138 QRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176
+ + VRL+ + G+ R+ G + G+ + F DA
Sbjct: 58 ENY-PHVRLL-HQANAGVSVARNTGLAVATGKYVAFPDA 94
>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
hyaluronan. Hyaluronan synthases (HASs) are
bi-functional glycosyltransferases that catalyze
polymerization of hyaluronan. HASs transfer both GlcUA
and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
respectively to the hyaluronan chain using UDP-GlcNAc
and UDP-GlcUA as substrates. HA is made as a free
glycan, not attached to a protein or lipid. HASs do not
need a primer for HA synthesis; they initiate HA
biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
and Mg2+. Hyaluronan (HA) is a linear
heteropolysaccharide composed of (1-3)-linked
beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
be found in vertebrates and a few microbes and is
typically on the cell surface or in the extracellular
space, but is also found inside mammalian cells.
Hyaluronan has several physiochemical and biological
functions such as space filling, lubrication, and
providing a hydrated matrix through which cells can
migrate.
Length = 235
Score = 37.6 bits (88), Expect = 0.006
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 85 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV 144
+VI+ ++E + SI+++ P EII+V D + L + ++ G
Sbjct: 3 TVIIPVYDEDPDVFRECLRSILRQKPL----EIIVVTDGDDEPYLSILSQTV--KYGGIF 56
Query: 145 RLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 198
+ G R + G + +++V LD+ N LP +L P + D K+
Sbjct: 57 --VITVPHPGKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKP-FEDPKV 107
>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
family-2 subfamily with unknown function.
Glycosyltransferase family 2 (GT-2) subfamily of unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 221
Score = 36.0 bits (84), Expect = 0.016
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 35/137 (25%)
Query: 161 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEP 220
GA +RG+ ++FL A + +W D I+ DG FR ++
Sbjct: 66 AGAAAARGDWLLFLHADTRLPPDW----------DAAIIETLRADG--AVAGAFRLRFDD 113
Query: 221 DHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAG--GLFAMDRAFFLELGGYD 278
+ E G + R + PY G GLF + R F ELGG+
Sbjct: 114 PGPRLRLLELGAN----------LRSRLFGL-PY------GDQGLF-IRRELFEELGGFP 155
Query: 279 PGLLVWGGENFELSFKI 295
L E+ EL ++
Sbjct: 156 ELPL---MEDVELVRRL 169
>gnl|CDD|226577 COG4092, COG4092, Predicted glycosyltransferase involved in capsule
biosynthesis [Cell envelope biogenesis, outer membrane].
Length = 346
Score = 35.7 bits (82), Expect = 0.032
Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 25/229 (10%)
Query: 104 SIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLI---RTRS 160
S +K + + +I + D+ + YI +V + E +
Sbjct: 28 SAVKVFTSSDITMVICLRAHEVM---DRLIRSYIDPMP-RVLYLDFGSPEPFASETICAN 83
Query: 161 RGAKES----RGEVIVFLDAHCEVGLNWLPPLL--APIYSDRKIMTVPVIDGIDYQTWEF 214
GA S +++FLD C + +L A I R + P++ + +
Sbjct: 84 NGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKAD 143
Query: 215 RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL 274
V+ + E+ L E K+ + PY +F ++R F
Sbjct: 144 TQVFFDVEDMF----LDAMIFESPLAEFR-KEDNFFIAPYT------NIFLINRRMFSLT 192
Query: 275 GGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHV-YRSFMPYNF 322
GGYD G E+FE ++ + ++ + + + + R F +
Sbjct: 193 GGYDERFRGHGSEDFEFLTRLGLYIKNLPMLTKNHLYPLDERFFSSRPY 241
>gnl|CDD|188532 TIGR04017, WcaA, colanic acid biosynthesis glycosyl transferase
WcaA. This gene is one of the glycosyl transferases
involved in the biosynthesis of colanic acid, an
exopolysaccharide expressed in Enterobacteraceae
species.
Length = 279
Score = 33.9 bits (77), Expect = 0.094
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 99 MRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLIR 157
+R + S++++ + E+I+VDD SS ++L+ +++ N +VR N G
Sbjct: 21 IRAIKSVLRQDYDNW--EMIIVDDCSSSY---EQLQQFVEALNDPRVRYTHNDINSGACA 75
Query: 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 190
R++ +++GE I +D E W P L+
Sbjct: 76 VRNQAIMQAKGEYITGIDDDDE----WTPNRLS 104
>gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferases, which are involved in
bacterial capsule biosynthesis.
Length = 194
Score = 32.7 bits (75), Expect = 0.21
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 260 AGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI 310
G R+ E+GG+D + E+F+ + ++ G + +VP S +
Sbjct: 73 VGSGALFRRSALQEVGGFDESSV---SEDFDFALRLRRAGYRVRFVPESGV 120
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 32.1 bits (74), Expect = 0.29
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 45/142 (31%)
Query: 161 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG-----IDYQTWEFR 215
GA ++G++++FL A + ++L + + + G D R
Sbjct: 65 AGAALAKGDILLFLHADTRLPKDFLEAIRRALAPPGAVA------GCFDLRFDGPGLLLR 118
Query: 216 SVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAG--GLFAMDRAFFLE 273
+ EWG+ + + PY G GLF + R+ F +
Sbjct: 119 -----------LIEWGV-----------NLRSRLTGIPY------GDQGLF-VRRSLFEQ 149
Query: 274 LGGYDPGLLVWGGENFELSFKI 295
+GG+ L E+ ELS ++
Sbjct: 150 IGGFPDIPL---MEDIELSRRL 168
>gnl|CDD|182197 PRK10018, PRK10018, putative glycosyl transferase; Provisional.
Length = 279
Score = 32.7 bits (74), Expect = 0.30
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 99 MRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLIR 157
+R + S++++ + + E+I+VDD S+ ++L+ Y+ N ++ I N G
Sbjct: 21 IRAIKSVLRQDYSNW--EMIIVDDCSTSW---EQLQQYVTALNDPRITYIHNDINSGACA 75
Query: 158 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 190
R++ ++GE I +D E W P L+
Sbjct: 76 VRNQAIMLAQGEYITGIDDDDE----WTPNRLS 104
>gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase;
Provisional.
Length = 333
Score = 32.0 bits (73), Expect = 0.44
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 116 EIILVDDFSSKADLDQKLEDYIQRFNGK------VRLIRNTEREGLIRTRSRGAKESRGE 169
EII+V+D SK + +D+ ++ + L+RN + G +R G SRG+
Sbjct: 109 EIIIVND-GSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR---IGMLASRGK 164
Query: 170 VIVFLDA 176
I+ +DA
Sbjct: 165 YILMVDA 171
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 31.3 bits (72), Expect = 0.76
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 21/63 (33%)
Query: 52 METSNHISF--DRTIPDLR--MEECKYWDYP-----------------LDLPKASVILVF 90
M T + ++F D + D++ M + +Y YP L + VILV
Sbjct: 252 MTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVD 311
Query: 91 HNE 93
HNE
Sbjct: 312 HNE 314
>gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase.
Length = 243
Score = 30.8 bits (70), Expect = 0.89
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN 141
K S+I+ +NE + + V+ I K EII+VDD S D Q + +Q+
Sbjct: 9 MKYSIIVPTYNERLN-IALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVY 65
Query: 142 G--KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176
G ++ L + GL G K + G+ +V +DA
Sbjct: 66 GEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDA 102
>gnl|CDD|218633 pfam05553, DUF761, Cotton fibre expressed protein. This family
consists of several plant proteins of unknown function.
Three of the sequences (from Gossypium hirsutum) in this
family are described as cotton fibre expressed proteins.
The remaining sequences, found in Arabidopsis thaliana,
are uncharacterized.
Length = 38
Score = 27.5 bits (62), Expect = 1.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 125 SKADLDQKLEDYIQRFNGKVRL 146
S ++D++ E++I RF ++RL
Sbjct: 1 SDDEVDRRAEEFIARFREQLRL 22
>gnl|CDD|133057 cd06435, CESA_NdvC_like, NdvC_like proteins in this family are
putative bacterial beta-(1,6)-glucosyltransferase.
NdvC_like proteins in this family are putative
bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium
japonicum synthesizes periplasmic cyclic
beta-(1,3),beta-(1,6)-D-glucans during growth under
hypoosmotic conditions. Two genes (ndvB, ndvC) are
involved in the beta-(1, 3), beta-(1,6)-glucan
synthesis. The ndvC mutant strain resulted in synthesis
of altered cyclic beta-glucans composed almost entirely
of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic
beta-(1,3),beta-(1,6)-D-glucans function for
osmoregulation. The ndvC mutation also affects the
ability of the bacteria to establish a successful
symbiotic interaction with host plant. Thus, the
beta-glucans may function as suppressors of a host
defense response.
Length = 236
Score = 29.3 bits (66), Expect = 2.6
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-----LIRTRSRGAKESRGEV 170
E+I++D+ + L + +E + + + R G L R A ++ E+
Sbjct: 30 EVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDA--EI 87
Query: 171 IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEP-DHHYRGIFE 229
I +DA +V +WL L PI+ D ++ V DY+ E Y+G F+
Sbjct: 88 IAVIDADYQVEPDWLKR-LVPIFDDPRVGFVQAPQ--DYRDGEESLFKRMCYAEYKGFFD 144
Query: 230 WGM 232
GM
Sbjct: 145 IGM 147
>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal
transduction mechanisms].
Length = 382
Score = 29.8 bits (67), Expect = 2.7
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 75 WDYPLDLPKA--SVILV-----FHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKA 127
+++ L P A S+ILV ++N + S FSS
Sbjct: 149 YNFVL-WPVALNSLILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVGFSS-E 206
Query: 128 DLDQKLEDY-----IQRFNGKVRLIRNTEREGLIRTR 159
DLD L+ I R + RL+R TE + L R
Sbjct: 207 DLDAALQRLGETLDIDR-DDLERLLRETELQALRRRM 242
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 29.2 bits (66), Expect = 3.0
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 134
A V ++F N + ++RT +E L +K D+ LE
Sbjct: 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLE 124
>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin
polymerase functions as a GalNAc transferase.
Chondroitin polymerase is a two domain, bi-functional
protein. The N-terminal domain functions as a GalNAc
transferase. The bacterial chondroitin polymerase
catalyzes elongation of the chondroitin chain by
alternatively transferring the GlcUA and GalNAc moiety
from UDP-GlcUA and UDP-GalNAc to the non-reducing ends
of the chondroitin chain. The enzyme consists of
N-terminal and C-terminal domains in which the two
active sites catalyze the addition of GalNAc and GlcUA,
respectively. Chondroitin chains range from 40 to over
100 repeating units of the disaccharide. Sulfated
chondroitins are involved in the regulation of various
biological functions such as central nervous system
development, wound repair, infection, growth factor
signaling, and morphogenesis, in addition to its
conventional structural roles. In Caenorhabditis
elegans, chondroitin is an essential factor for the worm
to undergo cytokinesis and cell division. Chondroitin is
synthesized as proteoglycans, sulfated and secreted to
the cell surface or extracellular matrix.
Length = 182
Score = 28.7 bits (65), Expect = 3.7
Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 63/204 (30%)
Query: 116 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG--LIRTRSRGAKESRGEVIVF 173
E+I+ DD S + + +E++ +F ++ + E EG + R++ ++G+ ++F
Sbjct: 28 EVIIADD-GSTEETKELIEEFKSQFPIPIKHVWQ-EDEGFRKAKIRNKAIAAAKGDYLIF 85
Query: 174 LDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI-DYQTWEFRSVYEPDHHYRGIFEWGM 232
+D C +P D I D+ + EP G
Sbjct: 86 IDGDC----------------------IPHPDFIADH-----IELAEPGVFLSG------ 112
Query: 233 LYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELS 292
R +E G + + L + G+D WGGE+ EL
Sbjct: 113 -------------SRVLLNEKLTERGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELV 159
Query: 293 FKIWMCGGSIEWVPCSRIGHVYRS 316
++ G +R
Sbjct: 160 ARLL------------NSGIKFRK 171
>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional.
Length = 444
Score = 29.2 bits (65), Expect = 4.4
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 73 KYWDYPLDL--------PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFS 124
++W + D+ P S+++ NEG + T+H+ + +T E+I ++D S
Sbjct: 58 RHWPWGDDVPAPELKGHPLVSILVPCFNEG-LNARETIHAALAQTYTNI--EVIAINDGS 114
Query: 125 SKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNW 184
S D + + ++R+I +G GA +R E +V +D + N
Sbjct: 115 SDDTAQVL--DALLAEDPRLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNA 172
Query: 185 LPPLLAPIYSDRKIMTV 201
+P L+AP+ ++ + V
Sbjct: 173 VPYLVAPLIANPRTGAV 189
>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
exopolysaccharide amylovora biosynthesis. AmsE is a
glycosyltransferase involved in exopolysaccharide
amylovora biosynthesis in Erwinia amylovora. Amylovara
is one of the three exopolysaccharide produced by E.
amylovora. Amylovara-deficient mutants are
non-pathogenic. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 201
Score = 28.4 bits (64), Expect = 4.7
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 85 SVIL-VFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGK 143
SV++ V+ E L + SI+K+T +E++LV D L++ LE++ ++
Sbjct: 1 SVLMSVYIKEKPEFLREALESILKQTLPP--DEVVLVKDGPVTQSLNEVLEEFKRKLP-- 56
Query: 144 VRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176
++++ + GL + + G K + + +D
Sbjct: 57 LKVVPLEKNRGLGKALNEGLKHCTYDWVARMDT 89
>gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an
inserted ferredoxin domain [Energy production and
conversion].
Length = 284
Score = 28.1 bits (63), Expect = 8.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 300 GSIEWVPCSRIGHVYRSFMPYNF----GKL--ADRVKGPLITYNYKRVIETW 345
+IE P IG +Y S Y F G+L + G L+T K E
Sbjct: 114 PAIEEEP-VVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHAKELA 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.141 0.443
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,958,244
Number of extensions: 1975955
Number of successful extensions: 1557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1531
Number of HSP's successfully gapped: 55
Length of query: 372
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 274
Effective length of database: 6,590,910
Effective search space: 1805909340
Effective search space used: 1805909340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)