RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11642
(372 letters)
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 361 bits (926), Expect = e-121
Identities = 162/358 (45%), Positives = 222/358 (62%), Gaps = 14/358 (3%)
Query: 15 PPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKY 74
+ + G GE G+ Y + +A R D + E G N+ S+ IS +R++PD+R C
Sbjct: 47 IRRDAQRVGNGEQGRPYPMTDAERV--DQAYRENGFNIYVSDKISLNRSLPDIRHPNCNS 104
Query: 75 WDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 134
Y LP S+I+ FHNEG+SSL+RTVHS++ R+P + + EI+LVDDFS + L + LE
Sbjct: 105 KRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE 164
Query: 135 DYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 194
DY+ F VR++R +REGLIRTR GA + G+VI FLD+HCE +NWLPPLL I
Sbjct: 165 DYMALFP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIAR 223
Query: 195 DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPY 254
+RK + P+ID ID+ + + + RG F+W M YK +P K S+P+
Sbjct: 224 NRKTIVCPMIDVIDHDDFRYETQ--AGDAMRGAFDWEMYYKRIPIPPELQKADP--SDPF 279
Query: 255 KSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVY 314
+SP AGGLFA+DR +F ELGGYDPGL +WGGE +E+SFK+WMCGG +E +PCSR+GH+Y
Sbjct: 280 ESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIY 339
Query: 315 RSFMPYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAYFYTREPLAMFLDMGDISEQ 372
R ++PY G + N KRV E W DE + Y Y R P L GD++ Q
Sbjct: 340 RKYVPYKV------PAGVSLARNLKRVAEVWMDE-YAEYIYQRRPEYRHLSAGDVAVQ 390
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 352 bits (904), Expect = e-119
Identities = 145/319 (45%), Positives = 205/319 (64%), Gaps = 9/319 (2%)
Query: 55 SNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYL 114
S I+ +R++PD+R+E CK YP +LP SV++VFHNE +S+L+RTVHS+I R+P +
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMI 61
Query: 115 EEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFL 174
EEI+LVDD S + L + LE Y+++ V +IR +R GLIR R +GA SRG+VI FL
Sbjct: 62 EEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFL 121
Query: 175 DAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 234
DAHCE WL PLLA I DR+ + P+ID I T+E+ + + G F W + +
Sbjct: 122 DAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSD---MTYGGFNWKLNF 178
Query: 235 KENELPEREAKKRKYN-SEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSF 293
+ +P+RE +RK + + P ++PT AGGLF++DR +F E+G YD G+ +WGGEN E+SF
Sbjct: 179 RWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISF 238
Query: 294 KIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAY 353
+IW CGG++E V CS +GHV+R PY F G +I N +R+ E W DE K +
Sbjct: 239 RIWQCGGTLEIVTCSHVGHVFRKATPYTF----PGGTGQIINKNNRRLAEVWMDE-FKNF 293
Query: 354 FYTREPLAMFLDMGDISEQ 372
FY P +D GDIS +
Sbjct: 294 FYIISPGVTKVDYGDISSR 312
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 347 bits (892), Expect = e-117
Identities = 130/356 (36%), Positives = 202/356 (56%), Gaps = 14/356 (3%)
Query: 18 EPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDY 77
+ K + + ++ +G N S+ + DR IPD R ++C+ +
Sbjct: 2 DALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQW 61
Query: 78 PLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI 137
+DLP SV++ FHNE S+L+RTV S++K++P ++EIILVDD+S+ + L
Sbjct: 62 RVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKI- 120
Query: 138 QRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 197
KVR++RN REGL+R+R RGA ++ +V+ FLD+HCE +WL PLL + DR
Sbjct: 121 ----EKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRT 176
Query: 198 IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYN-SEPYKS 256
+ P+ID I+ +++ +G F+W +++K + + + + R+ N P K+
Sbjct: 177 RVVSPIIDVINMDNFQYVGASA---DLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKT 233
Query: 257 PTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316
P AGGLF MD+ +F ELG YD + VWGGEN E+SF++W CGGS+E +PCSR+GHV+R
Sbjct: 234 PMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRK 293
Query: 317 FMPYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAYFYTREPLAMFLDMGDISEQ 372
PY F G + N +R E W DE +K ++Y P A + G+I +
Sbjct: 294 QHPYTFPG----GSGTVFARNTRRAAEVWMDE-YKNFYYAAVPSARNVPYGNIQSR 344
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 72.7 bits (178), Expect = 4e-14
Identities = 42/317 (13%), Positives = 97/317 (30%), Gaps = 20/317 (6%)
Query: 61 DRTIPDLRMEECKYWDYPLDLPKASVIL-VFHNEGFSSLMRTVHSIIK-RTPAQYLEEII 118
D R E Y L + S+++ ++ L T+ + +T Y E+I
Sbjct: 72 DYVWAGKRKELDDYPRKQLIIDGLSIVIPTYNRAKI--LAITLACLCNQKTIYDY--EVI 127
Query: 119 LVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-EGLIRTRSRGAKESRGEVIVFLDA- 176
+ DD S + ++++ + ++ ++ +R + L R+ G + ++ + LD
Sbjct: 128 VADDGSKE-NIEEIVREFESL--LNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCD 184
Query: 177 ------HCEVGLNWLP--PLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIF 228
+ + L +A I + I T + +
Sbjct: 185 MAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVA 244
Query: 229 EWGMLY-KENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE 287
+ E +GG A + + G +D WGGE
Sbjct: 245 GKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGE 304
Query: 288 NFELSFKIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVKGPLITYNYKRVIETWFD 347
+ E ++++ G V + H + A + + +
Sbjct: 305 DNEFGYRLYREGCYFRSVEGAMAYHQEPPGKENETDRAAGKNITVQLLQQKVPYFYRKKE 364
Query: 348 EKHKAYFYTREPLAMFL 364
+ A +++++
Sbjct: 365 KIESATLKRVPLVSIYI 381
Score = 59.6 bits (144), Expect = 6e-10
Identities = 34/275 (12%), Positives = 80/275 (29%), Gaps = 41/275 (14%)
Query: 27 GGKAYHLPEAY----RAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLP 82
G + A G + + + + + R +E +P
Sbjct: 316 GCYFRSVEGAMAYHQEPPGKENETDRAAGKNITVQLLQQKVPYFYRKKEKIESATLKRVP 375
Query: 83 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLE--EIILVDDFSSKADLDQKLEDYIQRF 140
S+ + +N ++R V S + Q + E+ + DD S+ L L+++
Sbjct: 376 LVSIYIPAYN-CSKYIVRCVESAL----NQTITDLEVCICDDGSTDDTLR-ILQEHYANH 429
Query: 141 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 200
+VR I + +G+ + + RG I LD+ + + + L D +
Sbjct: 430 P-RVRFISQ-KNKGIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLAC 487
Query: 201 VPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHA 260
V + + + + I+ L
Sbjct: 488 V----YTTNRNIDREGNLISNGYNWPIYSREKLTSAM---------------------IC 522
Query: 261 GGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKI 295
+ G++ + ++++ K+
Sbjct: 523 HHFRMFTARAWNLTEGFNESIS--NAVDYDMYLKL 555
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 57.3 bits (138), Expect = 4e-09
Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 82 PKASVILVFHN-EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF 140
K ++I+ ++N E + + + SI ++ + +I+V+D S + +++ I+ +
Sbjct: 2 NKLTIIVTYYNAEEY--ITGCLESIKQQRTQDF--NLIIVND-GSTDQSKKLMDEAIKDY 56
Query: 141 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176
+ +R I E G R+ +E +FLDA
Sbjct: 57 DKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDA 92
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 51.6 bits (124), Expect = 8e-08
Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 82 PKASVILVFHN-EGFSSLMRTVHSIIKRTPAQYLE-EIILVDDFSSKADLD---QKLEDY 136
PK SVI+ +N + + +++ SI+ +T + + E+ ++DD S+ + + +
Sbjct: 1 PKVSVIMTSYNKSDY--VAKSISSILSQT---FSDFELFIMDDNSN----EETLNVIRPF 51
Query: 137 IQRFNGKVRLIRN--------TEREGLIRTRSRGAKESRGEVIVFLDA 176
+ + +VR ++ TE+ ++ + + GE I +
Sbjct: 52 LN--DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 51.6 bits (123), Expect = 2e-07
Identities = 28/248 (11%), Positives = 65/248 (26%), Gaps = 18/248 (7%)
Query: 78 PLDLPKASVILVFHNEGFSSLMRTVHSIIKRT-PAQYLEEIILVDDFSSKADLDQKLEDY 136
+V + N + + + + Q + +I+ D K
Sbjct: 176 APGTANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAA 234
Query: 137 IQRFNGKVRLIRNTER-------EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 189
R ++ + + K + + I+F+D + + + +L
Sbjct: 235 AARLGSRLSIHDQPNLGGSGGYSRVMY----EALKNTDCQQILFMDDDIRLEPDSILRVL 290
Query: 190 APIYSDRKIMTV-PVIDGID--YQTWEFRSVYEP-DHHYRGIFEWGMLYKENELPEREAK 245
A + M V + + V + + + E P +
Sbjct: 291 AMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEYDHDFAEYPLNDNN 350
Query: 246 KRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWV 305
R + G M E G L + ++ + + G +
Sbjct: 351 SRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLPLFIK-WDDADYGLRAAEHGYPTVTL 409
Query: 306 PCSRIGHV 313
P + I H+
Sbjct: 410 PGAAIWHM 417
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 47.4 bits (112), Expect = 3e-06
Identities = 31/220 (14%), Positives = 62/220 (28%), Gaps = 26/220 (11%)
Query: 117 IILVDDFSSKADLDQKLEDYIQRFNGKVR----LIRNTEREGLIRTRS--RGAKESRGEV 170
LV D +A D+ LE + + + N E + +G
Sbjct: 21 CSLVRD---QAKYDRLLESFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRY 77
Query: 171 IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEW 230
++F E+ L+A I + + ++ G+ W + +
Sbjct: 78 VIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQALHISDVF 137
Query: 231 GMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFE 290
G R+ + P + + M R + G + +
Sbjct: 138 G-------------NDRRRGNVPCRVESLDECFLLMRRLKPVLNSYDMQG---FHYYGAD 181
Query: 291 LSFKIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVK 330
L + GG + + H R+ NF +L +
Sbjct: 182 LCLQAEFLGGRA-YAIDFHLHHYGRAIADENFHRLRQEMA 220
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 43.5 bits (102), Expect = 6e-05
Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 23/256 (8%)
Query: 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN 141
SV+L +E + + +V I ++E+I++D S+ + + + +
Sbjct: 48 RTISVVLPALDEEDT--IGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVS 105
Query: 142 GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT 200
+ L R G R SRG+++VF+D+ ++P L+ P+ + +
Sbjct: 106 REQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHL 165
Query: 201 VPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHA 260
V + L E
Sbjct: 166 V-----KSFYRRPLNVGDAGGGAGATGGGRVTELVARPL------LAALRPELGCILQPL 214
Query: 261 GGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGS--IEWVPCSRIGHVYRSFM 318
GG +A R + + PG +G E L + G I V H R
Sbjct: 215 GGEYAATRELLTSV-PFAPG---YGVE-IGLLVDTFDRLGLDAIAQVNLGVREHRNRPL- 268
Query: 319 PYNFGKLADRVKGPLI 334
G ++ +V L+
Sbjct: 269 -AELGAMSRQVIATLL 283
>3bcv_A Putative glycosyltransferase protein; protein structure initiative
II, PSI-II NYSGXRC, structural genomics; 2.35A
{Bacteroides fragilis}
Length = 240
Score = 38.4 bits (90), Expect = 0.002
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 80 DLPKASVIL-VFHNEGFSSLMRTVHSIIKRTPAQYLE-EIILVDDFSSKADLD---QKLE 134
+PK SVI+ +++ E + L + V +++ +T + EIIL+DD S D + +
Sbjct: 3 LIPKVSVIVPIYNVEKY--LDQCVQALLAQT---LSDIEIILIDDESP----DNCPKICD 53
Query: 135 DYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 176
DY ++ +++I + + GL + G + GE + F D+
Sbjct: 54 DYAAQYP-NIKVI-HKKNAGLGMACNSGLDVATGEYVAFCDS 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.004
Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 76/184 (41%)
Query: 77 YPLDLPKASVIL--VFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQK-L 133
YP S++ + +NEG S M ++ ++L Q+ +
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSI------------------------SNLTQEQV 349
Query: 134 EDYIQRFNG------KVRL-IRNTER-----------EGLIRT-----RSRGAKESRGEV 170
+DY+ + N +V + + N + GL T G +SR
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--- 406
Query: 171 IVFLDAHCEVGLNWLP-------PLLAP----IYSD---------RKIMTVPV---IDGI 207
I F + + +LP LL P I D K + +PV DG
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 208 DYQT 211
D +
Sbjct: 467 DLRV 470
Score = 34.6 bits (79), Expect = 0.061
Identities = 44/287 (15%), Positives = 89/287 (31%), Gaps = 91/287 (31%)
Query: 47 EYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSII 106
E+ + + T++ + L+ E+ LP+ + +E ++ V
Sbjct: 17 EHVLLVPTASFFIASQ----LQ-EQFN-----KILPEPTEGFAADDE-PTTPAELV---- 61
Query: 107 KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN------------------------- 141
++L + + + S DQ L + F
Sbjct: 62 ----GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 142 GKVRLIRN-------TEREGLIRTRS---RGAKESRGEVI-VF---------LDAHCEVG 181
LI+N +R ++ S R E +++ +F + E
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE---E-- 172
Query: 182 LNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEF-RSVYEPDHHY-RG--IFEWGMLYKEN 237
L +Y ++ +I E R+ + + + +G I EW L +
Sbjct: 173 -------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--LENPS 223
Query: 238 ELPEREAKKRKY-NSEPYKSPTHAGGLFAMDR-AFFLELGGYDPGLL 282
P+++ Y S P P G+ + +L G+ PG L
Sbjct: 224 NTPDKD-----YLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGEL 263
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 34.4 bits (78), Expect = 0.050
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 234 YKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSF 293
Y + P A + + Y GG+ + R F ++ G WG E+ E
Sbjct: 135 YPSSLGPLHIAGPKLHPKYHY--DNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFV 192
Query: 294 KIWMCGGSIEWVPCSRIGHVYRSF 317
+I G + + G +F
Sbjct: 193 RIRDAGLQVTRPQNIKTGT-NDTF 215
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 32.9 bits (74), Expect = 0.12
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 257 PTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRS 316
+ GG+ A+ + FL + G+ WGGE+ ++ ++ G SI P + +G
Sbjct: 172 VQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISR-PNAVVGTTRHI 230
Query: 317 FMPYNFGKLADRVKGPLITYNYKR 340
+ + + I + +
Sbjct: 231 RHSRDKKNEPNPQRFDRIAHTKET 254
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 33.3 bits (75), Expect = 0.13
Identities = 21/173 (12%), Positives = 55/173 (31%), Gaps = 11/173 (6%)
Query: 32 HLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFH 91
+ ++ DL + + S +L
Sbjct: 50 SEFMSTYHERPLGPASAAEWFRQRSYDYGQFPPEDLARRKRELG------LTVSAVLPSR 103
Query: 92 NEGFS--SLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN 149
N + ++ +H++ +R P +++I++VD S + ++ +
Sbjct: 104 NVADTVGGIIDEIHALNERAP--LIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGY 161
Query: 150 TEREGLIRTRSRGAKESRGEVIVFLDA-HCEVGLNWLPPLLAPIYSDRKIMTV 201
+ G R +RG++++++DA + +L P+ + V
Sbjct: 162 GDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFV 214
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 32.4 bits (73), Expect = 0.22
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 16/124 (12%)
Query: 84 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS--KADLDQKLEDYIQRFN 141
+ V+ F +E + ++ A +L + + ++ I R
Sbjct: 2 SLVVFPFKHEH----PEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRAT 57
Query: 142 GKVRLIRNTEREGLIRT---------RSRGAKESRGEVIVFLDA-HCEVGLNWLPPLLAP 191
G +R ER G +R +E++ E I F DA G +W+
Sbjct: 58 GTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEA 117
Query: 192 IYSD 195
Sbjct: 118 ADFG 121
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D*
3su8_X*
Length = 644
Score = 29.7 bits (66), Expect = 1.8
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 55 SNHISFDRTIPDLRMEECKYWDYPLDLPKAS-----VILVFHNEGFSSL---MRTVHSII 106
N + + R IP + +Y+ AS +L + +S +H +
Sbjct: 542 INKLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAELSWNYSGDLGARVALHELY 601
Query: 107 KRTPAQYLEEIILV---DDFSSKADLDQKLEDYIQRFNGKV 144
K +Y ++II D + K L +L+ KV
Sbjct: 602 KYI-NKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVENKV 641
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding,
glutathione biosynthesis, nucleotide-binding,
phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces
cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Length = 692
Score = 28.9 bits (64), Expect = 2.9
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 305 VPCSRIGHV--YRSFMPYNFGKLADRVKGPLITYNYKRVIE---TWFDE---KHKAYFYT 356
+P SR V + + D P+ R++E D KH A+ Y
Sbjct: 357 IPKSRYSSVDLFLGGSKFFNRTYND-TNVPINEKVLGRLLENDKAPLDYDLAKHFAHLYI 415
Query: 357 REPLAMFLDM 366
R+P++ F ++
Sbjct: 416 RDPVSTFEEL 425
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl
protease, glycoprotein, hydrolase, signal, zymogen; HET:
IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB:
1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A*
1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A*
2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Length = 453
Score = 28.2 bits (63), Expect = 5.6
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 269 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312
F+L + G L GG G + + + +
Sbjct: 279 TFYLPVHDKHTGFLTIGGIEERF------YEGPLTYEKLNHDLY 316
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A
{Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A*
3fnu_A*
Length = 451
Score = 27.9 bits (62), Expect = 6.6
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 269 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312
+ +L + G L GG G + + +
Sbjct: 278 SIYLPPENKNKGYLTIGGIEERF------FDGPLNYEKLNHDLM 315
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus
morhua} SCOP: b.50.1.2
Length = 324
Score = 27.6 bits (62), Expect = 6.6
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 269 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312
+F+L GG + ++ GG + GSI W+P + +
Sbjct: 152 SFYLSGGGANGSEVMLGGVDNSH------YTGSIHWIPVTAEKY 189
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa}
SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A*
1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E*
3utl_A
Length = 370
Score = 27.7 bits (62), Expect = 7.3
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 269 AFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIGH 312
+ +L +++ GG + GS+ WVP S G+
Sbjct: 196 SVYLSSNDDSGSVVLLGGIDSSY------YTGSLNWVPVSVEGY 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.443
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,152,922
Number of extensions: 384694
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 29
Length of query: 372
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 277
Effective length of database: 4,049,298
Effective search space: 1121655546
Effective search space used: 1121655546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)