RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11642
(372 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 230 bits (588), Expect = 5e-74
Identities = 143/313 (45%), Positives = 200/313 (63%), Gaps = 9/313 (2%)
Query: 61 DRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILV 120
+R++PD+R+E CK YP +LP SV++VFHNE +S+L+RTVHS+I R+P +EEI+LV
Sbjct: 1 NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLV 60
Query: 121 DDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEV 180
DD S + L + LE Y+++ V +IR +R GLIR R +GA SRG+VI FLDAHCE
Sbjct: 61 DDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCEC 120
Query: 181 GLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 240
WL PLLA I DR+ + P+ID I T+E+ G F W + ++ +P
Sbjct: 121 TAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYM---AGSDMTYGGFNWKLNFRWYPVP 177
Query: 241 EREAKKRKYN-SEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCG 299
+RE +RK + + P ++PT AGGLF++DR +F E+G YD G+ +WGGEN E+SF+IW CG
Sbjct: 178 QREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCG 237
Query: 300 GSIEWVPCSRIGHVYRSFMPYNFGKLADRVKGPLITYNYKRVIETWFDEKHKAYFYTREP 359
G++E V CS +GHV+R PY F G +I N +R+ E W DE K +FY P
Sbjct: 238 GTLEIVTCSHVGHVFRKATPYTFPGG----TGQIINKNNRRLAEVWMDE-FKNFFYIISP 292
Query: 360 LAMFLDMGDISEQ 372
+D GDIS +
Sbjct: 293 GVTKVDYGDISSR 305
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 63.4 bits (154), Expect = 9e-12
Identities = 31/270 (11%), Positives = 56/270 (20%), Gaps = 64/270 (23%)
Query: 86 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS----------KADLDQKLED 135
V+ F +E L+ V + P + E++ +
Sbjct: 3 VVFPFKHEHPEVLLHNV-RVAAAHP--RVHEVLCIGYERDQTYEAVERAAPEISRATGTP 59
Query: 136 YIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD 195
R ++ +R + +G+ +E++ E I F DA
Sbjct: 60 VSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF 119
Query: 196 RKIMTVPVID---------------------GIDY-------QTWEF---RSVYE---PD 221
+ E R V D
Sbjct: 120 GYGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYED 179
Query: 222 HHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGL 281
R +WG+ + ++ E Y A L+ L
Sbjct: 180 ERVRRRSDWGI---DTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDLRTML------- 229
Query: 282 LVWGGENFELSFKIWMCGGSIEWVPCSRIG 311
E I + P
Sbjct: 230 -------VECFAAIQSLQHEVVGQPAIHRQ 252
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 52.3 bits (124), Expect = 2e-08
Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 8/154 (5%)
Query: 81 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF 140
L ++I+ +N L+R ++ L ++I+V + + ++
Sbjct: 2 LDSFTLIMQTYNRT-DLLLRLLNHYQAVP---SLHKVIVVWNNVGEKGPEELWNSLGPHP 57
Query: 141 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 200
+I + +R R + E ++ +D + L + I+
Sbjct: 58 I---PVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFS-IWQQFPDQI 113
Query: 201 VPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 234
+ + T Y G Y
Sbjct: 114 IGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQY 147
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
protein SpsA {Bacillus subtilis [TaxId: 1423]}
Length = 255
Score = 36.3 bits (82), Expect = 0.003
Identities = 22/217 (10%), Positives = 66/217 (30%), Gaps = 23/217 (10%)
Query: 82 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN 141
PK SVI+ +N+ + +++ SI+ +T + + E+ ++DD S++ L+
Sbjct: 1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNSNEETLNVIRPFLNDNRV 57
Query: 142 GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV 201
+ + +E + + + + +
Sbjct: 58 RFYQSDISGVKE-----------------RTEKTRYAALINQAIEMAEGEYITYATDDNI 100
Query: 202 PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAG 261
+ D + E + E Y + + + + E + + H
Sbjct: 101 YMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVTWNAPCAIDHCS 160
Query: 262 GLF---AMDRAFFLELGGYDPGLLVWGGENFELSFKI 295
+ +++ +D + + +++
Sbjct: 161 VMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRV 197
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 271
Score = 33.4 bits (76), Expect = 0.032
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 231 GMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFE 290
Y+ P + + GG+ A+ + FL + G+ GGE+ +
Sbjct: 130 HNTYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDD 189
Query: 291 LSFKIWMCGGSIEWVPCSRIGHVYRSF 317
+ ++ G S+ P + IG R
Sbjct: 190 IYNRLAFRGMSVSR-PNAVIGK-TRMI 214
>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
9606]}
Length = 242
Score = 26.7 bits (58), Expect = 4.5
Identities = 10/132 (7%), Positives = 32/132 (24%), Gaps = 17/132 (12%)
Query: 77 YPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDY 136
Y + L+ +N F + + + + D + D L
Sbjct: 4 YQMKSKPRGYCLIINNHNF-----------AKAREKVPKLHSIRDRNGTHLDA-GALTTT 51
Query: 137 IQRFNGKVRLIRNTEREGLIRTR---SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY 193
+ + +++ + E + + I + +H +
Sbjct: 52 FEELHFEIKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHG--DKGIIYGTDGQEA 109
Query: 194 SDRKIMTVPVID 205
++ +
Sbjct: 110 PIYELTSQFTGL 121
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 25.9 bits (57), Expect = 7.9
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 282 LVWGGENFELSFKIWMCGGSIEWVPCSRIGHVYRSFMPYNFGKLADRVKGPLI 334
L + ++ L+ K+ G S IG P N + ++ K P+I
Sbjct: 129 LPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVI 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.443
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,533,335
Number of extensions: 76381
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 10
Length of query: 372
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,213,086
Effective search space: 345729510
Effective search space used: 345729510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)