BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11646
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
pdb|2NYU|B Chain B, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
Length = 196
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%)
Query: 182 GDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKP 241
D+T T + I + D+++ D AP+ TG DLD L + L++T +L+P
Sbjct: 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP 137
Query: 242 GGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYV 298
GGTF+ K + L+ + F+NV I KP++SR S E + + Y K V
Sbjct: 138 GGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTV 194
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 144 FNPIYDLYEKLSRKPKWTEY--TQV----RTYRCLLF-----TGVIQVQGDITKESTIKE 192
F P + + + W++Y TQ+ R C L GV +QGD E +K
Sbjct: 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKA 79
Query: 193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRS 252
+ D KV +V+ D AP+++G +D L+ AL + +L PGG+FV K+F+
Sbjct: 80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139
Query: 253 RNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293
+ + F V + KP SSR S E +IV +P
Sbjct: 140 EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180
>pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase,
Putative, From Plasmodium Falciparum (Pf13_0052)
Length = 201
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 9/109 (8%)
Query: 190 IKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFL---LKPGGTFV 246
+KEI D+K+D+++ D A G + +D+HL L L+IT F+ + GGT++
Sbjct: 98 LKEILQ---DKKIDIILSDAAVPCIG-NKIDDHLNSCEL--TLSITHFMEQYINIGGTYI 151
Query: 247 GKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
K++ L+T + F+ V KPK+SRN S E ++VC+N+ K
Sbjct: 152 VKMYLGSQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNFLGRK 200
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
VLDVGCG G T KL ++ K VG+D+S I+ K P L F+ +++
Sbjct: 57 VLDVGCGDGYGTYKL-----SRTGYKAVGVDISEVXIQKGKERGEGPDLSFIKGDLSSLP 111
Query: 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNI 127
E+ +F I + L W ++ +A++ I
Sbjct: 112 FEN---EQFEAIXAINSLEWTEEPLRALNEI 139
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
ATLY+ +S LL Q E +LD+GCG G +T K + +S ++
Sbjct: 32 ATLYQDKHSFVWQYGEDLLQLLNPQ----PGEFILDLGCGTGQLTEK-----IAQSGAEV 82
Query: 64 VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
+G D + I+ A+ ++ P L F VA+ + ++ + +FS LHWV++ A
Sbjct: 83 LGTDNAATXIEKARQNY--PHLHFDVADARNFRVDK----PLDAVFSNAXLHWVKEPEAA 136
Query: 124 ISNIY 128
I++I+
Sbjct: 137 IASIH 141
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH-HTNPKLEFVVA 90
T+N +LD+G G G + S L+ P++ LV D+S M++ AKN N K++++ A
Sbjct: 43 TENPDILDLGAGTG-LLSAFLMEKYPEATFTLV--DMSEKMLEIAKNRFRGNLKVKYIEA 99
Query: 91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQ 120
+ + + E K++ + S +H ++D+
Sbjct: 100 DYSKYDFEE----KYDMVVSALSIHHLEDE 125
>pdb|3G5T|A Chain A, Crystal Structure Of Trans-Aconitate 3-Methyltransferase
From Yeast
Length = 299
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK-----NHH 80
ID++ + + ++DVGCGPG T L K +++G D+S IK A+ +
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTAT--LQXAQELKPFEQIIGSDLSATXIKTAEVIKEGSPD 86
Query: 81 TNPKLEFVVANIAD---QNLESIFLAKFNKIFSFYCLHWV---QDQRQAISNI 127
T + F +++ D +S+ K + I + C HW + QR A +N+
Sbjct: 87 TYKNVSFKISSSDDFKFLGADSVDKQKIDXITAVECAHWFDFEKFQRSAYANL 139
>pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell
Division From Thermoplasma Volcanicum Gss1
Length = 191
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 175 TGVIQVQGDITKESTIKEIFSHFDDE---KVDLVVFDGAPDVTGLHDLDEHLQGLLLIGA 231
GV ++ DI KE+ +I +E KVD VV D V+G+ D + +
Sbjct: 62 AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAXAKVSGIPSRDHAVSYQIGQRV 121
Query: 232 LNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFI 286
I L+ GG + K F+ ++ F + I+KP +SR SS E +I
Sbjct: 122 XEIAVRYLRNGGNVLLKQFQGDXTNDFIAIWRKNFSSYKISKPPASRGSSSEIYI 176
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
+L + I + VLDVGCG G +L V++ G+ +S + A
Sbjct: 48 RLTDEXIALLDVRSGDRVLDVGCGIGKPAVRLATAR----DVRVTGISISRPQVNQANAR 103
Query: 80 HTNPKLE----FVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAI 124
T L F A+ D E A F+ +++ LH D+ +A+
Sbjct: 104 ATAAGLANRVTFSYADAXDLPFED---ASFDAVWALESLHHXPDRGRAL 149
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT 81
L +YI FK VLD+GCG G L + ++ +G+D++ +MIK +
Sbjct: 32 LRRYIPYFKGC--RRVLDIGCGRGE-----FLELCKEEGIESIGVDINEDMIKFCEGKFN 84
Query: 82 NPKLEFV--VANIADQNLESIFLAKF 105
K + + + ++ D+ L+ + ++ F
Sbjct: 85 VVKSDAIEYLKSLPDKYLDGVMISHF 110
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI 92
+ ++VLD+GCG G + K++G+D+S M+ AK T+P + + I
Sbjct: 44 NQKTVLDLGCGFG----WHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAI 99
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWV 117
D +E +N + S LH++
Sbjct: 100 EDIAIEP---DAYNVVLSSLALHYI 121
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase
From Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase
From Plasmodium Falciparum
Length = 299
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
+L + I K ++ VL++GCG GN+T KLL L K K++ +D+ MI K
Sbjct: 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLL--PLAK---KVITIDIDSRMISEVK 81
>pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
Length = 950
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA 76
+ + + +++D GCG G++ LL + P S+ ++G+D+SP + A
Sbjct: 714 LKHIRESSASTLVDFGCGSGSLLDSLL--DYPTSLQTIIGVDISPKGLARA 762
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKL 51
L + K+L+Q I Q + ++V ++G G G++T+KL
Sbjct: 12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKL 47
>pdb|3CGG|A Chain A, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
pdb|3CGG|B Chain B, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
Length = 195
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA-DQ 95
+LD GCG G + L K ++G D+ P +I +AK P+ +VV +++ DQ
Sbjct: 50 ILDAGCGQGRIGGY-----LSKQGHDVLGTDLDPILIDYAKQDF--PEARWVVGDLSVDQ 102
Query: 96 NLESIF--LAKFNKIFSFYCLHWVQDQRQ-AISNIY 128
E+ F + + F +D R+ A++NI+
Sbjct: 103 ISETDFDLIVSAGNVXGFLA----EDGREPALANIH 134
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN 91
+VLD+GCG G T LP+ + GLDVS IK A + P++ F VA+
Sbjct: 88 AVLDIGCGEGYYTHA-FADALPE--ITTFGLDVSKVAIKAAAKRY--PQVTFCVAS 138
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK--------NHHTNPK 84
+++ +LD+GCG G ++ + L + G+D++ I+ A+ N T K
Sbjct: 30 EDDEILDIGCGSGKISLE-----LASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGK 84
Query: 85 LEFVVANIA 93
EF V N +
Sbjct: 85 AEFKVENAS 93
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHA 76
+++ ID+ + VL+VG G GN+T KLL + K+V ++ P ++ K
Sbjct: 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLL-----EKAKKVVACELDPRLVAELHKRV 70
Query: 77 KNHHTNPKLEFVVANIADQNL 97
+ KL+ +V ++ +L
Sbjct: 71 QGTPVASKLQVLVGDVLKTDL 91
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 20/88 (22%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDV------SPNMIKHAKNH-------- 79
E +L++GCG G++++ +L + S + G+D+ +P + A NH
Sbjct: 44 GEKILEIGCGQGDLSA--VLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD 101
Query: 80 ----HTNPKLEFVVANIADQNLESIFLA 103
H N L + IADQ+ + + LA
Sbjct: 102 RLTVHFNTNLSDDLGPIADQHFDRVVLA 129
>pdb|3JWI|A Chain A, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Cthen1-Cn
pdb|3JWI|B Chain B, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Cthen1-Cn
Length = 207
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
K + + V+D+GCG GN+ S L KS ++ G+DVS ++++ AK+
Sbjct: 23 LKSVNAKKVIDLGCGEGNLLS---LLLKDKSFEQITGVDVSYSVLERAKDR 70
>pdb|3JWG|A Chain A, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Cthen1-C
Length = 219
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
L + K + + V+D+GCG GN+ S L KS ++ G+DVS ++++ AK+
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLS---LLLKDKSFEQITGVDVSYSVLERAKDR 72
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
TD+ + D+GCG G T L L + K ++ G+D+ P+ I+
Sbjct: 45 TDDAKIADIGCGTGGQT--LFLADYVKG--QITGIDLFPDFIE 83
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
TD+ + D+GCG G T L L + K ++ G+D+ P+ I+
Sbjct: 51 TDDAKIADIGCGTGGQT--LFLADYVKG--QITGIDLFPDFIE 89
>pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
Length = 259
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 187 ESTIKEIFSHFDDEKVDLVVFD----GAPDVTGLHDLDEHLQ------GLLLIGALNITT 236
E +K+I E+ D+V + PD T L + +EH + L + +
Sbjct: 105 EYDLKKITDLIPKERADIVTCNPPYFATPD-TSLKNTNEHFRIARHEVXCTLEDTIRVAA 163
Query: 237 FLLKPGGT--FVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP 294
LLK GG FV + R +++ + K+++ + + P+S R ++ ++ +P
Sbjct: 164 SLLKQGGKANFVHRPERLLDIIDIXRKYRLEPKRIQFVHPRSDREANTVLVEGIKDGKPG 223
Query: 295 KDYVPTIM 302
YVP ++
Sbjct: 224 VKYVPPVI 231
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 27 DQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVG 65
D + W+ VLDVG G G + + + L P+L ++V+L G
Sbjct: 176 DAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAG 216
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 369 RTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLD 416
R + +++A N L+ IP ++ + + C +V+ NG + FP+D
Sbjct: 49 RGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVD 96
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEF 87
T+ + D+GCG G T +L ++P K+ G+D P I K+A+ + +++
Sbjct: 51 TNKSLIADLGCGTGGQT-MILAQHVPG---KITGIDFFPGFIERFNKNAEKLNLQNRVKG 106
Query: 88 VVANIADQNLE 98
+V ++ D + E
Sbjct: 107 IVGSMDDLSFE 117
>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A
Selective Inhibitor
Length = 351
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNV 47
L++Q ID+ K TD++ +D+G G G V
Sbjct: 143 LVAQMIDEIKMTDDDLFVDLGSGVGQV 169
>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Epz004777
Length = 352
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNV 47
L++Q ID+ K TD++ +D+G G G V
Sbjct: 144 LVAQMIDEIKMTDDDLFVDLGSGVGQV 170
>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With
5-Iodotubercidin
Length = 438
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNV 47
L++Q ID+ K TD++ +D+G G G V
Sbjct: 161 LVAQMIDEIKMTDDDLFVDLGSGVGQV 187
>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam
pdb|3QOX|A Chain A, Dot1l Structure In Complex With Sah
Length = 426
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNV 47
L++Q ID+ K TD++ +D+G G G V
Sbjct: 153 LVAQMIDEIKMTDDDLFVDLGSGVGQV 179
>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A
Non-Set Domain Nucleosomal Histone Methyltransferase
Length = 416
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNV 47
L++Q ID+ K TD++ +D+G G G V
Sbjct: 143 LVAQMIDEIKMTDDDLFVDLGSGVGQV 169
>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated
Sah Analog
pdb|4EQZ|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed2
pdb|4ER0|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed1
pdb|4ER7|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0947
Length = 421
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNV 47
L++Q ID+ K TD++ +D+G G G V
Sbjct: 144 LVAQMIDEIKMTDDDLFVDLGSGVGQV 170
>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2
Molecules Of Epz004777
pdb|4ER6|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0946
Length = 413
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNV 47
L++Q ID+ K TD++ +D+G G G V
Sbjct: 144 LVAQMIDEIKMTDDDLFVDLGSGVGQV 170
>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004
pdb|4EKG|A Chain A, Crystal Structure Of Dot1l In Complex With Epz003696
pdb|4EKI|A Chain A, Crystal Structure Of Dot1l In Complex With Epz004777
Length = 425
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNV 47
L++Q ID+ K TD++ +D+G G G V
Sbjct: 152 LVAQMIDEIKMTDDDLFVDLGSGVGQV 178
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEF 87
T+ + D+GCG G T +L ++P K+ G+D P I K+A+ + +++
Sbjct: 46 TNKSLIADLGCGTGGQT-MILAQHVPG---KITGIDFFPGFIERFNKNAEKLNLQNRVKG 101
Query: 88 VVANIADQNLE 98
+V ++ D + E
Sbjct: 102 IVGSMDDLSFE 112
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 63 LVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF 111
L G D +P +I K +HT+ ++FVV + ++ L A +K+F
Sbjct: 542 LNGTDKTPALISDYKEYHTDTTVKFVV-KMTEEKLAQAEAAGLHKVFKL 589
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
+W VLD+GC G++T + P + VGLD+ +I A+ +
Sbjct: 43 EWFRGRDVLDLGCNVGHLTLSIACKWGPS---RXVGLDIDSRLIHSARQN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,650,759
Number of Sequences: 62578
Number of extensions: 502806
Number of successful extensions: 1203
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 63
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)