BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11646
(433 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Homo sapiens GN=FTSJ1 PE=1 SV=2
Length = 329
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 98/132 (74%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV+Q+QGDIT+ ST KEI HF DLVV DGAPDVTGLHD+DE++Q LL+ ALNI
Sbjct: 84 GVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIA 143
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
T +LKPGG FV KIFR R+V L ++ Q+FF +V AKP+SSRNSSIE+F VCQ Y PP+
Sbjct: 144 THVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPE 203
Query: 296 DYVPTIMNPFTE 307
++P + P +
Sbjct: 204 GFIPDLSKPLLD 215
>sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1
Length = 270
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 99/132 (75%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV+Q++GDITK T K+I SHFD DL++ DGAPDVTGLHD+D + Q L++ ALNIT
Sbjct: 87 GVVQIKGDITKYETSKQIISHFDGSLADLIISDGAPDVTGLHDIDFYGQSQLILSALNIT 146
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
T LK GGTFV K+F+ ++ + ++ ++FFE+VS KP SSR SS+E+FI+C+NY+PP
Sbjct: 147 THTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHVSFVKPSSSRESSLENFILCRNYQPPL 206
Query: 296 DYVPTIMNPFTE 307
+Y P I++P E
Sbjct: 207 NYNPKIIDPALE 218
>sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.03c PE=3 SV=1
Length = 285
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 93/133 (69%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV +Q DIT +T+ I SHF +E DLVV DGAPDVTGLHDLDE++Q +L+ A N+
Sbjct: 92 GVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLA 151
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
+LKPGG FV KIFR R+V L ++ ++ F VS AKP+SSR SSIESF+VC+++ PP
Sbjct: 152 VCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCEDFNPPS 211
Query: 296 DYVPTIMNPFTEI 308
++ P + P I
Sbjct: 212 NFQPDLTKPLCVI 224
>sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3
Length = 337
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 94/136 (69%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GVIQ+QGDIT T ++ HF EK D+V+ DGAPDVTG+H LDE +Q L++ A NIT
Sbjct: 85 GVIQLQGDITSVDTANQVIKHFSGEKSDIVICDGAPDVTGIHSLDEFMQAELILAAFNIT 144
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
+ +LK GG F+ KIFRSRN L + + +F+ V +AKP+SSR SS E+F++C +Y PP+
Sbjct: 145 SHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPRSSRQSSCEAFVLCLDYSPPE 204
Query: 296 DYVPTIMNPFTEITGA 311
+VPT+ + T A
Sbjct: 205 GFVPTMGKTSLDATDA 220
>sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1
OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1
Length = 302
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 106/161 (65%), Gaps = 9/161 (5%)
Query: 176 GVIQVQGDITKESTIKEIFSHFD-DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNI 234
G++Q+QGDITK+ST + I HF +EK LVV DGAPDVTG+H++DE++Q LL+ AL+I
Sbjct: 91 GILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSI 150
Query: 235 TTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP 294
T +L+ GGTFV KIF+ L ++ QIFF+ I KP SSR SSIE+F+VC ++ P
Sbjct: 151 ATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKPPSSRPSSIEAFVVCSDFCLP 210
Query: 295 KDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPY 335
+ Y+P ++NP D + L++ +V R + P+
Sbjct: 211 EGYIPQVINP--------ARDDIRLLAQKTGSEVNRRLVPF 243
>sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM7 PE=1 SV=1
Length = 310
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
V +Q DIT T+ I F +EK D V DGAPDVTGLHDLDE++Q L++ AL +T
Sbjct: 93 VTTLQADITHPKTLARILKLFGNEKADFVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTA 152
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
+LK GGTFV KIFR R++ L ++ F+ + AKP+SSR +S+E+FIVC Y PP +
Sbjct: 153 CILKKGGTFVAKIFRGRDIDMLYSQLGYLFDKIVCAKPRSSRGTSLEAFIVCLGYNPPSN 212
Query: 297 YVPTI 301
+ P +
Sbjct: 213 WTPKL 217
>sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2
OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1
Length = 320
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 87/124 (70%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV Q++ DI+KEST + I F EK +VV DGAPD TG+HD D ++QG LL+ AL+I+
Sbjct: 90 GVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTGMHDFDSYVQGELLLSALSIS 149
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
TF+L+ GG+FV KI+R+ L T+ + FF+NV + KP +SRNSSIE+F+V + + P
Sbjct: 150 TFILEEGGSFVSKIYRADRTSRLYTQLKRFFKNVCVFKPSASRNSSIEAFVVAREFCLPD 209
Query: 296 DYVP 299
Y P
Sbjct: 210 GYKP 213
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1
Length = 845
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT E + H K D V+ DGAP+V D Q L + AL +
Sbjct: 88 VITFQSDITTEDCRSRLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAV 147
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GGTFV KIFRSR+ L FQ FE V KP +SRN S E F+VC+ ++ PK
Sbjct: 148 ENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKK 207
Query: 297 YVPTIMNP---FTEITGAQWSDYVSSLSESNKKDVARFISPYHHS 338
P +++P F E+ G +ES + + A+ +P S
Sbjct: 208 LDPRLLDPKEVFEELGGG---------NESKQNNEAKIFNPEKFS 243
>sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SPB1 PE=3 SV=2
Length = 831
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 67/127 (52%)
Query: 178 IQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTF 237
I Q DIT E ++ H K D V+ DGAP+V D Q L + AL +
Sbjct: 89 ITFQSDITTEDCRSQLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSHLTLQALKLAVE 148
Query: 238 LLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDY 297
L GGTFV KIFRSR+ L FQ FE V KP +SRN S E F+VC+ Y+ PK
Sbjct: 149 NLNTGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGYKSPKKM 208
Query: 298 VPTIMNP 304
P +++P
Sbjct: 209 DPRLLDP 215
>sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=spb1 PE=3 SV=2
Length = 831
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT E I SH K D+V+ DGAP+V D + Q L + +L + T
Sbjct: 86 VITFQSDITTEKCRATIRSHLKTWKADVVLHDGAPNVGTAWVQDSYNQAELALHSLKLAT 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GGTFV K+FRS++ L F V KP SSRN S E F+VC+ ++ PK
Sbjct: 146 EFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPPSSRNVSAEIFVVCRGFKAPKR 205
Query: 297 YVPTIMNP---FTEITG 310
P +++P F ++ G
Sbjct: 206 IDPKLLDPRSVFEDVAG 222
>sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=spb1 PE=3 SV=1
Length = 795
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT E I H K D V+ DGAP+V D Q L++ ++ + T
Sbjct: 86 VITFQSDITTEKCRATIRQHLKHWKADTVLHDGAPNVGTAWVQDAFSQAELVLQSMKLAT 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GGTFV K+FRS++ L F+ F +V KP SSRN S E F+VC+ ++ PK
Sbjct: 146 EFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRNVSAEIFVVCRGFKAPKR 205
Query: 297 YVPTIMNP---FTEIT 309
P ++P F E+T
Sbjct: 206 IDPKFLDPKHVFAELT 221
>sp|Q6CV12|SPB1_KLULA AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SPB1 PE=3 SV=1
Length = 833
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 69/128 (53%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT E ++ + K D V+ DGAP+V D Q L + AL +
Sbjct: 89 VITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLSWAQDAFTQSHLTLQALKLAV 148
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GGTFV KIFRS++ L FQ FE V KP +SRN S E F+VC+N++ PK
Sbjct: 149 ENLVVGGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKNFKAPKK 208
Query: 297 YVPTIMNP 304
P +++P
Sbjct: 209 LDPRLLDP 216
>sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=spb1 PE=3 SV=1
Length = 806
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 108/241 (44%), Gaps = 22/241 (9%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT E I SH K D V+ DGAP+V D Q L++ +L + T
Sbjct: 86 VITFQQDITTEKCRATIRSHLKHWKADTVLHDGAPNVGTAWVQDAFSQAELVLESLKLAT 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GGTFV K+FRS++ L F+ F +V KP SSRN S E F+VC+ Y+ PK
Sbjct: 146 EFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEATKPPSSRNVSAEIFVVCRGYKAPKR 205
Query: 297 YVPTIMNP---FTEITGAQWSDYVSSLSESNKKDVARFISPYHHS------KHPISEMTA 347
P ++ F E+ ++ + KK R Y + P++E
Sbjct: 206 IDPKFLDSKHVFAELADPTPNNEAKVFNPEKKK---RKREGYEEGDWTQFKEIPVTEFIN 262
Query: 348 LLQSVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNG 407
+ + C N S+ + DL AL + L+R+P T D+ N C D+ G
Sbjct: 263 TTDPIAI-LGSC--NKLSFQQQPGGDL--ALAT----LDRLPETT-DEIRNCCEDLKVLG 312
Query: 408 N 408
Sbjct: 313 K 313
>sp|Q6C9Q1|SPB1_YARLI AdoMet-dependent rRNA methyltransferase SPB1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SPB1 PE=3 SV=1
Length = 850
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT + +++ + K D V+ DGAP+V D Q L++ +L +
Sbjct: 88 VITFQSDITTDHCRQQLRQYMKTWKADTVMHDGAPNVGMAWAQDAFTQSELVLQSLKLAV 147
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GGTFV K+FRS++ L FQ FFE V KP SSRN S E F+VC ++ PK
Sbjct: 148 EFLNKGGTFVTKVFRSKDYNNLMWVFQQFFEKVEATKPPSSRNVSAEIFVVCLKFKAPKK 207
Query: 297 YVPTIMNP---FTEIT 309
P +++ F E++
Sbjct: 208 IDPRLLDAKYVFEEVS 223
>sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3
SV=2
Length = 865
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT E I H K D V+ DGAP+V D Q L + A+ + T
Sbjct: 86 VITFQSDITTEKCRATIRQHLKTWKADTVLHDGAPNVGTAWVQDSFNQAELTLQAMKLAT 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GGTFV K+FRS++ + F F+ V KP SSRN S E F+VC+ ++ PK
Sbjct: 146 EFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEATKPPSSRNVSAEIFVVCRGFKAPKR 205
Query: 297 YVPTIMNP---FTEIT 309
P ++P F E+
Sbjct: 206 IDPKFLDPRAVFAELA 221
>sp|Q5ZKM1|SPB1_CHICK pre-rRNA processing protein FTSJ3 OS=Gallus gallus GN=FTSJ3 PE=2
SV=2
Length = 832
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 65/118 (55%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
V+ +Q DIT E + + KVD+V+ DGAP+V D + Q L + AL +
Sbjct: 86 VVTLQEDITTEKCRQALRKELQTWKVDVVLNDGAPNVGASWVHDAYSQANLTLMALKLAC 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP 294
L GG F+ K+FRSR+ L FQ FF V KP++SRN S E F+VCQ Y+ P
Sbjct: 146 EFLCKGGWFITKVFRSRDYQPLLWIFQQFFHKVQATKPQASRNESAEIFVVCQGYQAP 203
>sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SPB1 PE=3 SV=2
Length = 830
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDL-DEHLQGLLLIGALNIT 235
VI Q DIT E ++ + K D V+ DGAP+V GL+ + D Q L + AL +
Sbjct: 88 VITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNV-GLNWVQDAFTQSHLTLQALKLA 146
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295
L GGTFV KIFRS++ L FQ F+ V KP +SRN S E F+VC+ ++ PK
Sbjct: 147 VENLVVGGTFVTKIFRSKDYNKLMWVFQQLFDKVEATKPPASRNVSAEIFVVCKGFKAPK 206
Query: 296 DYVPTIMNP 304
P +++P
Sbjct: 207 KLDPRLLDP 215
>sp|O42832|SPB1_SCHPO AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2
Length = 802
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 66/124 (53%)
Query: 183 DITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242
DIT + ++ + K D+V+ DGAP+V D + Q L++ ++ + L G
Sbjct: 93 DITSDKCRSQLRGYLKTWKADVVLHDGAPNVGSAWLQDAYGQAQLVLMSMKLACEFLVAG 152
Query: 243 GTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIM 302
GTFV K+FRSR+ L F+ F V KP SSRN S E F+VC+ Y+ PK P
Sbjct: 153 GTFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRNVSAEIFVVCRGYKAPKKLDPRFT 212
Query: 303 NPFT 306
+P T
Sbjct: 213 DPRT 216
>sp|P0CS78|SPB1_CRYNJ AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=SPB1 PE=3 SV=1
Length = 908
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%)
Query: 182 GDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKP 241
DIT + + H D K DLV+ DGAP+V D Q L++ +L + T L
Sbjct: 92 ADITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLAK 151
Query: 242 GGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTI 301
GG+FV K+FRS++ L F F++V KP SSRN S E F+VC+++ PK P
Sbjct: 152 GGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRNVSAEIFVVCRDFIAPKHIDPKF 211
Query: 302 MNP 304
++P
Sbjct: 212 LDP 214
>sp|P0CS79|SPB1_CRYNB AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=SPB1 PE=3 SV=1
Length = 908
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%)
Query: 182 GDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKP 241
DIT + + H D K DLV+ DGAP+V D Q L++ +L + T L
Sbjct: 92 ADITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLAK 151
Query: 242 GGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTI 301
GG+FV K+FRS++ L F F++V KP SSRN S E F+VC+++ PK P
Sbjct: 152 GGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRNVSAEIFVVCRDFIAPKHIDPKF 211
Query: 302 MNP 304
++P
Sbjct: 212 LDP 214
>sp|P25582|SPB1_YEAST 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SPB1 PE=1 SV=2
Length = 841
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT E ++ + K D V+ DGAP+V D Q L + AL +
Sbjct: 88 VITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAV 147
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GTFV KIFRS++ L FQ FE V KP +SRN S E F+VC+ ++ PK
Sbjct: 148 ENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKR 207
Query: 297 YVPTIMNP---FTEITGAQ 312
P +++P F E+ Q
Sbjct: 208 LDPRLLDPKEVFEELPDGQ 226
>sp|Q4P6G5|SPB1_USTMA AdoMet-dependent rRNA methyltransferase SPB1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SPB1 PE=3 SV=1
Length = 921
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCL 258
D K D+V+ DGAP+V D + Q L + +L + L GGTFV K+FRS++ L
Sbjct: 110 DWKADIVIHDGAPNVGTAWVQDAYAQSELTLQSLRLAVEFLTAGGTFVTKVFRSKDYNNL 169
Query: 259 ETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNP---FTEITGAQWSD 315
F F+ V KP SSRN S E F+VCQ Y+ P P ++P F E+ A +D
Sbjct: 170 LWVFNQLFKKVEATKPSSSRNVSAEIFVVCQGYKNPARIDPKFLDPRHVFKELDPASLAD 229
>sp|Q6FX63|SPB1_CANGA AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SPB1 PE=3 SV=1
Length = 837
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 66/128 (51%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
VI Q DIT E + + K D V+ DGAP+V D Q L + AL +
Sbjct: 88 VITFQSDITTEDCRSRLRGYMKTWKADTVLHDGAPNVGLGWAQDAFTQSHLTLQALKLAV 147
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GTFV KIFRS++ L FQ FE V KP +SRN S E F+VC+ ++ PK
Sbjct: 148 ENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKK 207
Query: 297 YVPTIMNP 304
P +++P
Sbjct: 208 LDPRLLDP 215
>sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Dictyostelium discoideum GN=fsjC
PE=3 SV=1
Length = 833
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 178 IQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTF 237
I + DIT + EI KVD+ + DGAP++ D + Q L + AL + T
Sbjct: 88 IGLTEDITTQKCRTEIKKALKTWKVDVCLHDGAPNMGTSWVQDAYQQAELTLHALKLATE 147
Query: 238 LLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDY 297
L GG FV K+FR + L F F+ V KP SSRN+S E F+VCQ + PK
Sbjct: 148 FLTTGGWFVTKVFRGSDYNSLIWVFNKLFKKVESTKPPSSRNASAEIFVVCQGFLNPKRI 207
Query: 298 VPTIMNP---FTEITGAQWSDYVSSLSESNK 325
P +++P F EI + D +S + N+
Sbjct: 208 DPKLLDPKFVFKEIQEVKKVDVLSEKKKVNR 238
>sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2
SV=1
Length = 841
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
V+ +Q DIT E + + KVD+V+ DGAP+V D + Q L + AL +
Sbjct: 86 VVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLAC 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GG+F+ K+FRSR+ L FQ F V KP++SR+ S E F+VCQ + P
Sbjct: 146 DFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDK 205
Query: 297 YVPTIMNP---FTEI 308
+P F E+
Sbjct: 206 VDSKFFDPKFAFKEV 220
>sp|Q8IY81|SPB1_HUMAN pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1
SV=2
Length = 847
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
V+ +Q DIT E + + KVD+V+ DGAP+V D + Q L + AL +
Sbjct: 86 VVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLAC 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GG+F+ K+FRSR+ L FQ F V KP++SR+ S E F+VCQ + P
Sbjct: 146 DFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDK 205
Query: 297 YVPTIMNP---FTEI 308
+P F E+
Sbjct: 206 VDSKFFDPKFAFKEV 220
>sp|Q5RJT2|SPB1_RAT pre-rRNA processing protein FTSJ3 OS=Rattus norvegicus GN=Ftsj3
PE=2 SV=1
Length = 829
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
V+ +Q DIT E + + KVD+V+ DGAP+V D + Q L + AL +
Sbjct: 86 VVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLAC 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GG F+ K+FRSR+ L FQ F V KP++SR+ S E F+VCQ + P
Sbjct: 146 DFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRHESAEIFVVCQGFLAPDK 205
Query: 297 YVPTIMNP---FTEI 308
+P F E+
Sbjct: 206 VDAKFFDPKFAFKEV 220
>sp|Q9DBE9|SPB1_MOUSE pre-rRNA processing protein FTSJ3 OS=Mus musculus GN=Ftsj3 PE=1
SV=1
Length = 838
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
V+ +Q DIT E + + KVD+V+ DGAP+V D + Q L + AL +
Sbjct: 86 VVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLAC 145
Query: 237 FLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKD 296
L GG F+ K+FRSR+ L FQ F V KP++SR+ S E F+VCQ + P
Sbjct: 146 DFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRHESAEIFVVCQGFLAPDK 205
Query: 297 YVPTIMNP---FTEI 308
+P F E+
Sbjct: 206 VDAKFFDPKFAFKEV 220
>sp|Q91FT7|235L_IIV6 Putative methyltransferase 235L OS=Invertebrate iridescent virus 6
GN=IIV6-235L PE=3 SV=1
Length = 265
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 19/140 (13%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVK- 62
T Y N+ Q L + L DQ + N++V+D+GCG G +T N S+VK
Sbjct: 20 VTSYSKNSDFQYLSSKNFL----DQLQIASNKTVIDIGCGNGKIT------NYISSLVKD 69
Query: 63 --LVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ 120
++G+D +MIK+AK T P ++F V +I ++N++ K++ + SF+CL W+ ++
Sbjct: 70 GSVIGIDKDSSMIKYAK--ETYPNVDFKVMDIQNENID----KKYDIVVSFFCLPWIVNK 123
Query: 121 RQAISNIYNLLMPGGEVLLL 140
+ + +I N++ G ++ +L
Sbjct: 124 QASFHHISNMMKSGSKLYIL 143
>sp|Q58771|RLME_METJA Ribosomal RNA large subunit methyltransferase E
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rlmE PE=3
SV=1
Length = 245
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 174 FTGVIQVQGDITKESTIKEIFSHF--DDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGA 231
+ V+ ++GD T E + +I D++KVD+V+ D +P+++G D+D L+ A
Sbjct: 87 YDNVVAIKGDFTLEENLNKIRELIPNDEKKVDVVISDASPNISGYWDIDHARSIDLVTTA 146
Query: 232 LNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNY 291
L I T +LK G FV K+F + + +FE V I KP++SR S E +++ + Y
Sbjct: 147 LQIATEMLKERGNFVAKVFYGDMIDDYVNLVKKYFEKVYITKPQASRKESAEVYVIAKRY 206
Query: 292 RPPK 295
K
Sbjct: 207 TGKK 210
>sp|Q3KI92|RLME_PSEPF Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
fluorescens (strain Pf0-1) GN=rlmE PE=3 SV=1
Length = 209
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T+++ + +I + +VDLV+ D AP+++G ++D L AL++ +L
Sbjct: 93 IQGDFTEDAVLAQILEAVGNSQVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERIL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
KPGG FV KIF+ + F+ + + KP SSR SS E +++ YR
Sbjct: 153 KPGGNFVIKIFQGEGFDTYLKDARKKFDKIQMIKPDSSRGSSREQYMLAWGYR 205
>sp|Q4KIG3|RLME_PSEF5 Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=rlmE PE=3
SV=1
Length = 209
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 64/113 (56%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T+++ + +I + +VDLV+ D AP+++GL +D L AL++ +L
Sbjct: 93 IQGDFTEDAVLAQILEAVGNSEVDLVISDMAPNMSGLAAVDMPRAMFLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ KIF+ + FE V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKIFQGEGFDEYHKSVRQMFEKVQMRKPSSSRDRSREQYLLGRGFR 205
>sp|C3K267|RLME_PSEFS Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
fluorescens (strain SBW25) GN=rlmE PE=3 SV=1
Length = 216
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 63/113 (55%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
V GD T+++ + +I + +VDLV+ D AP+++GL +D L AL++ +L
Sbjct: 93 VHGDFTQDTVLAQILEAVGNSQVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ K+F+ + F+ V KP SSR+ S E +++C+ +R
Sbjct: 153 RPGGDFLVKVFQGEGFDEYHKNIRKLFDKVQTRKPDSSRDRSREQYLLCRGFR 205
>sp|Q4ZNQ4|RLME_PSEU2 Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=rlmE PE=3 SV=1
Length = 216
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 65/113 (57%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T+++ +++I + +VDLV+ D AP+++GL +D L AL++ +L
Sbjct: 93 IQGDFTEDAILEQILEAVGNTQVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ K+F+ + F+ V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDRSREQYLLARGFR 205
>sp|Q4FMX1|RLME_PELUB Ribosomal RNA large subunit methyltransferase E OS=Pelagibacter
ubique (strain HTCC1062) GN=rlmE PE=3 SV=1
Length = 203
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 178 IQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTF 237
IQ++GD T + ++I + F KVD+VV D A + TG+ D+D G L + A+N +
Sbjct: 90 IQIKGDFTDLESQEKIKALFKS-KVDVVVSDMAVNTTGIKDIDAIYTGELAMEAMNFSKE 148
Query: 238 LLKPGGTFVGKIFRSRN---VVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+L G FV KIF + +V L K F+ V + KPKSSR S ESFI+C+ R
Sbjct: 149 MLVKEGRFVSKIFLGSSFNEIVALGKK---LFKEVKVFKPKSSRKESKESFIICKILR 203
>sp|Q87WP7|RLME_PSESM Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rlmE PE=3 SV=1
Length = 216
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 65/113 (57%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T+++ +++I + +VDLV+ D AP+++GL +D L AL++ +L
Sbjct: 93 IQGDFTEDAILEQILEAVGNTQVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ K+F+ + F+ V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKVFQGEGFDIYHKDIRKLFDKVQMRKPSSSRDRSREQYLLARGFR 205
>sp|A1TXM4|RLME_MARAV Ribosomal RNA large subunit methyltransferase E OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rlmE
PE=3 SV=1
Length = 207
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 174 FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALN 233
GV +QGD T++ +I + D + D+V+ D AP+++G++ D+ L+ AL+
Sbjct: 87 IAGVEFIQGDFTEQEVFDQIMAILDGARADVVISDMAPNISGVNAADQAASMYLVELALD 146
Query: 234 ITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+ +LKP G+FV K+F + F+ V I KP SSR S E ++V + +R
Sbjct: 147 MACQVLKPKGSFVAKVFHGEGYDEYVKTVRESFDKVVIRKPDSSRARSREVYLVAKGFR 205
>sp|B1J262|RLME_PSEPW Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
putida (strain W619) GN=rlmE PE=3 SV=1
Length = 208
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 64/113 (56%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T++ +++I D VDLV+ D AP+++G ++D L AL++ T +L
Sbjct: 94 IQGDFTQDEVLQQILDAVGDSHVDLVISDMAPNMSGTPEVDMPRAMFLCELALDLATRVL 153
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
KPGG F+ KIF+ + F+ V + KP SSR+ S E +++ + ++
Sbjct: 154 KPGGDFLIKIFQGEGFDMYLKDVRTKFDKVQMRKPSSSRDRSREQYLLGKGFK 206
>sp|Q48E69|RLME_PSE14 Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=rlmE PE=3 SV=1
Length = 216
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T++ +++I + +VDLV+ D AP+++GL +D L AL++ +L
Sbjct: 93 IQGDFTEDKILEQILEAVGNTQVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ K+F+ + F+ V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDRSREQYLLARGFR 205
>sp|P95454|RLME_PSEAE Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rlmE PE=3 SV=2
Length = 207
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T+++ I D VDLV+ D AP+++G+ D+ L AL++ +L
Sbjct: 93 IQGDFTEDAVFARILEAIGDHPVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ KIF+ + + F+ V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKIFQGEGFDQYHKQAREMFDKVQMRKPLSSRDRSREQYLLARGFR 205
>sp|Q02FS0|RLME_PSEAB Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=rlmE PE=3 SV=1
Length = 207
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T+++ I D VDLV+ D AP+++G+ D+ L AL++ +L
Sbjct: 93 IQGDFTEDAVFARILEAIGDHPVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ KIF+ + + F+ V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKIFQGEGFDQYHKQAREMFDKVQMRKPLSSRDRSREQYLLARGFR 205
>sp|B7V1G4|RLME_PSEA8 Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
aeruginosa (strain LESB58) GN=rlmE PE=3 SV=1
Length = 207
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T+++ I D VDLV+ D AP+++G+ D+ L AL++ +L
Sbjct: 93 IQGDFTEDAVFARILEAIGDHPVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ KIF+ + + F+ V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKIFQGEGFDQYHKQAREMFDKVQMRKPLSSRDRSREQYLLARGFR 205
>sp|B3PLQ4|RLME_CELJU Ribosomal RNA large subunit methyltransferase E OS=Cellvibrio
japonicus (strain Ueda107) GN=rlmE PE=3 SV=1
Length = 211
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 63/118 (53%)
Query: 174 FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALN 233
GV +QGD T +S +I D VDLV+ D AP+++G++ +D+ L+ AL+
Sbjct: 87 LEGVEFIQGDFTDDSVFNQILLAIGDTPVDLVISDMAPNMSGINAVDQPQAMYLVELALD 146
Query: 234 ITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNY 291
+ +LKP G FV K+F + FE V I KP +SR+ S E ++V + +
Sbjct: 147 MAKRVLKPQGNFVAKVFHGEGYDQYLKDLKGCFEKVVIRKPDASRSRSREVYVVGKGF 204
>sp|Q1IF51|RLME_PSEE4 Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
entomophila (strain L48) GN=rlmE PE=3 SV=1
Length = 208
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T++ +++I D VDLV+ D AP+++G +D L AL++ T +L
Sbjct: 94 IQGDFTQDEVLQQILQAVGDSHVDLVISDMAPNMSGTPAVDMPRAMFLCELALDLATRVL 153
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
KPGG F+ KIF+ + F+ V + KP SSR+ S E +++ + ++
Sbjct: 154 KPGGDFLIKIFQGEGFDMYLKDVRSKFDKVQMRKPSSSRDRSREQYLLGKGFK 206
>sp|A6VCK9|RLME_PSEA7 Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
aeruginosa (strain PA7) GN=rlmE PE=3 SV=1
Length = 207
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T+++ I + VDLV+ D AP+++G+ D+ L AL++ +L
Sbjct: 93 IQGDFTEDAVFARILEAIGEHPVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ KIF+ + + F+ V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKIFQGEGFDQYHKQAREMFDKVQMRKPLSSRDRSREQYLLARGFR 205
>sp|A1K598|RLME_AZOSB Ribosomal RNA large subunit methyltransferase E OS=Azoarcus sp.
(strain BH72) GN=rlmE PE=3 SV=1
Length = 205
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV +QGD T+++ + E+ S VDLV+ D AP+++G+ +D+ L AL+
Sbjct: 89 GVDFLQGDFTEDAVLAELESRLAGAAVDLVLSDMAPNLSGVATVDQARSIYLCELALDFA 148
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
LKPGG F+ K+F+ + F +V + KPK+SR+ S E +++ + R
Sbjct: 149 RRHLKPGGQFLVKVFQGEGFMGFRKAMDEVFLSVQVRKPKASRDRSAEVYLLGVDLR 205
>sp|A6USA0|RLME_METVS Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rlmE
PE=3 SV=1
Length = 259
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 172 LLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGA 231
L + VI V+GD+T E T+K+I EK D+++ D +P+++G+ D+D L A
Sbjct: 85 LPYENVIAVKGDMTDEETLKKI-QDILPEKPDVIICDASPNISGVWDVDHTRSLELTTMA 143
Query: 232 LNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNY 291
L T +LK GG FV K+F+ +F+ KP++SR S E +++ ++Y
Sbjct: 144 LMTATKMLKKGGNFVVKVFQGDLFYKYVELVSEYFDKAFTTKPRASREESAEVYVIAKHY 203
Query: 292 RPPK 295
K
Sbjct: 204 NGKK 207
>sp|A4XYE8|RLME_PSEMY Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
mendocina (strain ymp) GN=rlmE PE=3 SV=1
Length = 207
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
+QGD T ++ I + VDLV+ D AP+++G+ D+ L AL++ +L
Sbjct: 93 IQGDFTDDAVFARILEAIGENPVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVL 152
Query: 240 KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+PGG F+ KIF+ + + F+ V + KP SSR+ S E +++ + +R
Sbjct: 153 RPGGDFLIKIFQGEGFDTYHRQVRDSFDKVQMRKPLSSRDRSREQYLLARGFR 205
>sp|Q0A769|RLME_ALHEH Ribosomal RNA large subunit methyltransferase E OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=rlmE PE=3 SV=1
Length = 209
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV +QGD T+E+ ++ + + VDLV+ D AP+++G+ +D+ L AL+
Sbjct: 92 GVHVIQGDFTEEAPLQALLQALEGRPVDLVLSDMAPNLSGVRVVDQPRAMYLAELALDFA 151
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNY 291
+L+PGG F+ K+F + Q F V KP++SR S ES+++ + +
Sbjct: 152 GQVLQPGGDFLTKVFHGEGLDDYRRDLQRQFSKVITRKPRASRARSRESYLLARGF 207
>sp|Q7NRI3|RLME_CHRVO Ribosomal RNA large subunit methyltransferase E OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rlmE PE=3 SV=1
Length = 205
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV +QGD +E+ ++E D +DLV+ D AP+++G+ +D+ LL AL
Sbjct: 89 GVDFIQGDFREEAVLREFEQLLDGRALDLVISDMAPNMSGMSAIDQARSFLLCELALEFA 148
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
LKPGG F+ K+F+ + + F+ V KPK+SR+ S E +++ + R
Sbjct: 149 RDHLKPGGHFLVKVFQGSDFQPYLKAMRELFDEVVTRKPKASRDRSSEIYLLGKGRR 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,680,403
Number of Sequences: 539616
Number of extensions: 6626922
Number of successful extensions: 18748
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 597
Number of HSP's that attempted gapping in prelim test: 17920
Number of HSP's gapped (non-prelim): 1113
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)