Query psy11646
Match_columns 433
No_of_seqs 481 out of 3115
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 15:20:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1099|consensus 100.0 1.9E-52 4.2E-57 372.8 13.5 207 163-377 77-287 (294)
2 COG0293 FtsJ 23S rRNA methylas 100.0 1.9E-29 4.2E-34 227.4 14.9 159 124-295 36-205 (205)
3 KOG4589|consensus 100.0 1.8E-28 4E-33 213.2 12.5 158 125-295 61-230 (232)
4 PRK11188 rrmJ 23S rRNA methylt 99.9 2.4E-24 5.3E-29 199.5 20.1 174 18-293 35-209 (209)
5 PF01728 FtsJ: FtsJ-like methy 99.9 2.2E-24 4.7E-29 195.7 11.4 92 200-291 90-181 (181)
6 PRK14103 trans-aconitate 2-met 99.9 9.1E-21 2E-25 181.3 19.6 127 1-142 1-127 (255)
7 PRK01683 trans-aconitate 2-met 99.8 1.8E-19 3.9E-24 172.6 18.7 127 3-142 5-131 (258)
8 COG2226 UbiE Methylase involve 99.8 1.1E-19 2.3E-24 169.5 11.1 132 4-144 21-159 (238)
9 COG4106 Tam Trans-aconitate me 99.8 1.7E-18 3.6E-23 154.9 18.2 145 3-160 4-150 (257)
10 PF01209 Ubie_methyltran: ubiE 99.8 2.8E-19 6E-24 168.0 10.7 134 3-144 16-156 (233)
11 KOG1098|consensus 99.8 1.7E-19 3.8E-24 181.6 8.4 170 124-306 35-215 (780)
12 TIGR00438 rrmJ cell division p 99.8 1.4E-17 3E-22 152.0 20.2 92 200-291 97-188 (188)
13 PLN02233 ubiquinone biosynthes 99.7 4.5E-17 9.7E-22 156.1 15.1 134 3-144 42-185 (261)
14 PF08241 Methyltransf_11: Meth 99.7 1.3E-16 2.7E-21 127.9 10.9 95 38-139 1-95 (95)
15 PRK10258 biotin biosynthesis p 99.7 4.4E-16 9.6E-21 148.5 15.2 134 3-150 16-149 (251)
16 TIGR02752 MenG_heptapren 2-hep 99.6 4E-15 8.6E-20 140.1 16.0 117 23-144 35-154 (231)
17 PF12847 Methyltransf_18: Meth 99.6 1.3E-15 2.9E-20 126.5 11.0 102 33-141 1-111 (112)
18 PLN02396 hexaprenyldihydroxybe 99.6 5E-15 1.1E-19 145.2 15.8 105 33-145 131-239 (322)
19 KOG1540|consensus 99.6 3.8E-15 8.3E-20 136.7 13.8 137 4-143 70-216 (296)
20 TIGR02072 BioC biotin biosynth 99.6 5.2E-15 1.1E-19 139.3 15.3 137 3-147 5-141 (240)
21 PTZ00098 phosphoethanolamine N 99.6 4.5E-15 9.8E-20 142.5 15.1 117 21-144 40-159 (263)
22 PLN02244 tocopherol O-methyltr 99.6 3.5E-15 7.6E-20 148.4 14.8 119 17-142 97-224 (340)
23 PF13847 Methyltransf_31: Meth 99.6 3E-15 6.5E-20 131.7 12.3 108 32-143 2-112 (152)
24 COG2227 UbiG 2-polyprenyl-3-me 99.6 8.3E-16 1.8E-20 141.1 8.1 106 33-146 59-166 (243)
25 PRK11036 putative S-adenosyl-L 99.6 9E-15 2E-19 139.9 13.3 118 20-145 32-153 (255)
26 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.8E-14 3.9E-19 141.9 14.1 117 19-141 98-215 (340)
27 PRK15451 tRNA cmo(5)U34 methyl 99.6 4.2E-15 9.1E-20 141.5 9.1 105 32-142 55-165 (247)
28 COG2230 Cfa Cyclopropane fatty 99.6 2.1E-14 4.6E-19 136.3 12.9 122 13-144 52-179 (283)
29 PF02353 CMAS: Mycolic acid cy 99.6 2E-14 4.3E-19 138.2 12.5 129 6-144 35-169 (273)
30 PRK05785 hypothetical protein; 99.6 5.7E-14 1.2E-18 131.8 15.1 118 3-134 18-140 (226)
31 PF13489 Methyltransf_23: Meth 99.6 2.2E-14 4.7E-19 126.6 11.4 110 18-144 9-118 (161)
32 PRK11207 tellurite resistance 99.6 3.3E-14 7E-19 130.7 12.7 105 27-140 24-133 (197)
33 PF08242 Methyltransf_12: Meth 99.6 9.5E-16 2.1E-20 124.8 2.2 96 38-137 1-99 (99)
34 TIGR00740 methyltransferase, p 99.6 1.8E-14 3.9E-19 136.5 10.8 105 32-142 52-162 (239)
35 PRK08317 hypothetical protein; 99.5 8.3E-14 1.8E-18 131.0 14.8 117 20-142 6-125 (241)
36 TIGR00452 methyltransferase, p 99.5 1.3E-13 2.7E-18 134.9 16.4 113 22-142 110-226 (314)
37 PLN02336 phosphoethanolamine N 99.5 6.5E-14 1.4E-18 145.8 14.4 115 23-144 256-372 (475)
38 TIGR00477 tehB tellurite resis 99.5 8.1E-14 1.8E-18 127.9 12.4 107 26-141 23-133 (195)
39 PRK11873 arsM arsenite S-adeno 99.5 9.3E-14 2E-18 134.1 13.2 108 30-142 74-184 (272)
40 PRK15068 tRNA mo(5)U34 methylt 99.5 1.8E-13 4E-18 134.9 13.8 110 24-141 113-226 (322)
41 PF13649 Methyltransf_25: Meth 99.5 8.4E-14 1.8E-18 113.8 8.5 95 37-135 1-101 (101)
42 PRK11705 cyclopropane fatty ac 99.5 3.9E-13 8.5E-18 135.5 14.7 122 14-145 148-271 (383)
43 smart00138 MeTrc Methyltransfe 99.5 2.7E-13 6E-18 130.1 12.4 117 20-140 86-241 (264)
44 PRK00107 gidB 16S rRNA methylt 99.5 5.9E-13 1.3E-17 120.9 13.8 99 32-141 44-145 (187)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 6.5E-13 1.4E-17 123.8 14.4 134 4-142 9-144 (223)
46 KOG1270|consensus 99.5 1.4E-13 2.9E-18 127.4 9.5 100 34-144 90-198 (282)
47 PRK00216 ubiE ubiquinone/menaq 99.5 7.1E-13 1.5E-17 124.8 14.1 117 22-143 40-160 (239)
48 smart00828 PKS_MT Methyltransf 99.5 3E-13 6.5E-18 126.7 10.8 101 35-142 1-105 (224)
49 KOG4300|consensus 99.5 1E-12 2.2E-17 117.2 13.0 108 33-146 76-187 (252)
50 PRK11088 rrmA 23S rRNA methylt 99.5 1.4E-12 3.1E-17 125.9 15.1 107 32-151 84-191 (272)
51 TIGR03587 Pse_Me-ase pseudamin 99.5 1.3E-12 2.7E-17 120.7 14.0 100 32-142 42-143 (204)
52 TIGR02469 CbiT precorrin-6Y C5 99.4 1.9E-12 4E-17 109.1 13.8 110 24-141 10-122 (124)
53 PF05401 NodS: Nodulation prot 99.4 9.4E-13 2E-17 118.0 12.3 104 29-141 39-146 (201)
54 PRK06922 hypothetical protein; 99.4 1E-12 2.2E-17 137.2 13.9 109 30-142 415-538 (677)
55 TIGR00138 gidB 16S rRNA methyl 99.4 1.5E-12 3.2E-17 117.9 13.0 98 33-141 42-142 (181)
56 PRK00121 trmB tRNA (guanine-N( 99.4 7.5E-13 1.6E-17 122.1 11.2 125 26-155 34-170 (202)
57 PRK12335 tellurite resistance 99.4 1.1E-12 2.4E-17 127.6 12.5 100 33-141 120-223 (287)
58 PRK05134 bifunctional 3-demeth 99.4 5.6E-12 1.2E-16 118.8 16.5 116 22-144 37-154 (233)
59 PRK13944 protein-L-isoaspartat 99.4 2.8E-12 6.1E-17 118.6 13.6 111 20-141 59-173 (205)
60 PRK06202 hypothetical protein; 99.4 2.2E-12 4.9E-17 121.6 12.9 108 32-145 59-170 (232)
61 KOG2361|consensus 99.4 2E-12 4.3E-17 118.2 11.8 170 20-206 56-234 (264)
62 PF03848 TehB: Tellurite resis 99.4 2.9E-12 6.3E-17 116.0 12.8 104 29-141 26-133 (192)
63 PF05175 MTS: Methyltransferas 99.4 6.5E-12 1.4E-16 112.7 15.0 118 19-146 20-145 (170)
64 PLN03075 nicotianamine synthas 99.4 2.5E-12 5.5E-17 123.6 12.7 104 32-141 122-233 (296)
65 PRK04266 fibrillarin; Provisio 99.4 4E-12 8.7E-17 119.0 12.8 122 14-141 54-176 (226)
66 PRK13942 protein-L-isoaspartat 99.4 4.5E-12 9.8E-17 117.8 12.9 112 19-141 62-176 (212)
67 TIGR03840 TMPT_Se_Te thiopurin 99.4 6.9E-12 1.5E-16 116.4 13.9 116 20-142 21-153 (213)
68 PF07021 MetW: Methionine bios 99.4 3.6E-12 7.8E-17 114.0 11.0 106 32-149 12-117 (193)
69 TIGR00091 tRNA (guanine-N(7)-) 99.4 2.9E-12 6.2E-17 117.5 10.5 109 33-144 16-135 (194)
70 PRK08287 cobalt-precorrin-6Y C 99.4 1.3E-11 2.9E-16 112.4 14.7 111 25-146 23-136 (187)
71 TIGR00537 hemK_rel_arch HemK-r 99.4 1.1E-11 2.3E-16 112.2 13.8 115 32-156 18-155 (179)
72 KOG3674|consensus 99.4 9.5E-14 2.1E-18 136.7 0.0 150 200-367 225-388 (696)
73 TIGR00080 pimt protein-L-isoas 99.4 1.1E-11 2.3E-16 115.6 13.3 111 20-141 64-177 (215)
74 PRK15001 SAM-dependent 23S rib 99.3 1.2E-11 2.7E-16 123.5 14.5 115 25-146 220-345 (378)
75 PRK09489 rsmC 16S ribosomal RN 99.3 1.4E-11 3.1E-16 122.2 14.7 117 27-151 190-313 (342)
76 PRK00377 cbiT cobalt-precorrin 99.3 3.6E-11 7.9E-16 110.6 14.5 122 26-154 33-158 (198)
77 PRK14967 putative methyltransf 99.3 3.9E-11 8.5E-16 112.4 15.0 127 20-154 23-172 (223)
78 PLN02336 phosphoethanolamine N 99.3 1.5E-11 3.2E-16 128.1 13.1 113 24-142 28-143 (475)
79 PF08003 Methyltransf_9: Prote 99.3 2.7E-11 5.9E-16 115.4 13.6 102 33-142 115-220 (315)
80 TIGR02021 BchM-ChlM magnesium 99.3 9.3E-11 2E-15 109.5 15.9 105 23-138 43-155 (219)
81 PRK13255 thiopurine S-methyltr 99.3 4.4E-11 9.5E-16 111.4 13.5 117 18-141 22-155 (218)
82 TIGR02716 C20_methyl_CrtF C-20 99.3 3.6E-11 7.9E-16 118.1 13.5 112 22-142 138-255 (306)
83 PRK14121 tRNA (guanine-N(7)-)- 99.3 4.4E-11 9.6E-16 119.2 13.3 115 24-142 113-236 (390)
84 COG2242 CobL Precorrin-6B meth 99.3 2E-10 4.4E-15 102.2 15.6 126 24-159 25-153 (187)
85 PLN02585 magnesium protoporphy 99.3 1.4E-10 3.1E-15 113.5 15.6 96 33-141 144-249 (315)
86 PF13659 Methyltransf_26: Meth 99.3 2.8E-11 6.1E-16 101.2 9.2 104 34-142 1-116 (117)
87 KOG3010|consensus 99.3 1.7E-11 3.7E-16 112.2 8.3 124 3-141 8-137 (261)
88 PRK07402 precorrin-6B methylas 99.2 1.3E-10 2.7E-15 106.7 14.0 112 25-145 32-146 (196)
89 TIGR01983 UbiG ubiquinone bios 99.2 1.4E-10 3.1E-15 108.4 14.0 104 33-143 45-151 (224)
90 PF01135 PCMT: Protein-L-isoas 99.2 4.6E-11 1E-15 110.3 10.4 114 18-142 57-173 (209)
91 TIGR02081 metW methionine bios 99.2 6.2E-11 1.4E-15 108.6 10.6 100 32-143 12-111 (194)
92 PRK00312 pcm protein-L-isoaspa 99.2 1.6E-10 3.4E-15 107.4 13.1 108 21-142 66-176 (212)
93 KOG1541|consensus 99.2 1E-10 2.2E-15 105.5 11.1 128 3-144 19-163 (270)
94 TIGR03533 L3_gln_methyl protei 99.2 1.1E-10 2.4E-15 113.2 12.4 120 15-141 102-251 (284)
95 TIGR03534 RF_mod_PrmC protein- 99.2 1.4E-10 3E-15 110.3 12.6 118 16-141 71-217 (251)
96 TIGR03438 probable methyltrans 99.2 2E-10 4.3E-15 112.5 13.9 112 32-145 62-181 (301)
97 TIGR03704 PrmC_rel_meth putati 99.2 2.2E-10 4.8E-15 109.2 12.9 125 14-142 66-217 (251)
98 PRK07580 Mg-protoporphyrin IX 99.2 5.4E-10 1.2E-14 104.9 15.5 94 31-135 61-160 (230)
99 TIGR00406 prmA ribosomal prote 99.2 4.1E-10 8.9E-15 109.6 14.8 109 32-152 158-270 (288)
100 PRK09328 N5-glutamine S-adenos 99.2 2.1E-10 4.5E-15 110.8 12.6 118 16-140 91-237 (275)
101 KOG1271|consensus 99.2 3.3E-10 7.1E-15 99.3 12.4 103 34-142 68-182 (227)
102 COG4123 Predicted O-methyltran 99.2 1.3E-10 2.9E-15 108.6 10.6 106 32-141 43-170 (248)
103 COG2518 Pcm Protein-L-isoaspar 99.2 2.3E-10 5E-15 104.0 11.7 108 20-141 59-169 (209)
104 PRK14966 unknown domain/N5-glu 99.2 2.4E-10 5.2E-15 114.7 13.0 120 14-140 234-380 (423)
105 KOG3673|consensus 99.2 6.7E-11 1.4E-15 118.1 8.8 114 181-294 328-447 (845)
106 PRK14968 putative methyltransf 99.2 6.4E-10 1.4E-14 100.8 14.3 104 32-144 22-151 (188)
107 PTZ00146 fibrillarin; Provisio 99.2 2.6E-10 5.6E-15 109.4 12.1 128 7-140 107-236 (293)
108 PF03291 Pox_MCEL: mRNA cappin 99.2 1.9E-10 4.2E-15 113.3 11.6 124 20-147 48-192 (331)
109 COG2813 RsmC 16S RNA G1207 met 99.2 5E-10 1.1E-14 106.9 13.7 121 24-152 149-277 (300)
110 TIGR01177 conserved hypothetic 99.2 4.4E-10 9.5E-15 111.5 14.0 115 24-146 173-299 (329)
111 PRK13256 thiopurine S-methyltr 99.2 3.3E-10 7.3E-15 105.4 12.2 120 18-142 28-164 (226)
112 PRK11805 N5-glutamine S-adenos 99.2 2.4E-10 5.3E-15 111.9 11.8 119 16-141 115-263 (307)
113 TIGR00536 hemK_fam HemK family 99.1 3E-10 6.5E-15 110.4 12.1 121 14-141 94-244 (284)
114 PRK00517 prmA ribosomal protei 99.1 6.4E-10 1.4E-14 106.1 13.3 117 15-147 103-219 (250)
115 PRK13943 protein-L-isoaspartat 99.1 4.3E-10 9.4E-15 110.4 12.3 111 20-141 67-180 (322)
116 cd02440 AdoMet_MTases S-adenos 99.1 8.5E-10 1.8E-14 88.3 11.7 99 36-140 1-103 (107)
117 PRK00811 spermidine synthase; 99.1 1.5E-09 3.2E-14 105.4 14.9 105 31-140 74-190 (283)
118 COG2519 GCD14 tRNA(1-methylade 99.1 1E-09 2.2E-14 102.0 12.9 123 24-157 85-211 (256)
119 PF05219 DREV: DREV methyltran 99.1 5.9E-10 1.3E-14 104.1 11.1 149 33-212 94-243 (265)
120 COG4976 Predicted methyltransf 99.1 3.4E-11 7.3E-16 109.2 2.6 115 20-142 112-226 (287)
121 KOG1975|consensus 99.1 4.1E-10 8.9E-15 107.0 9.9 126 32-162 116-257 (389)
122 PLN02232 ubiquinone biosynthes 99.1 3.5E-10 7.6E-15 100.4 8.6 78 64-144 1-84 (160)
123 PRK14901 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 112.2 13.3 117 28-146 247-389 (434)
124 PRK01544 bifunctional N5-gluta 99.1 8E-10 1.7E-14 115.4 11.9 101 33-140 138-268 (506)
125 PF08704 GCD14: tRNA methyltra 99.1 1.2E-09 2.7E-14 102.9 11.5 132 23-162 30-166 (247)
126 COG2890 HemK Methylase of poly 99.1 1.5E-09 3.2E-14 104.9 12.2 119 14-141 92-238 (280)
127 smart00650 rADc Ribosomal RNA 99.1 1.7E-09 3.6E-14 97.0 11.5 109 22-140 2-112 (169)
128 TIGR00446 nop2p NOL1/NOP2/sun 99.0 1.8E-09 4E-14 103.7 12.6 113 29-146 67-204 (264)
129 COG2264 PrmA Ribosomal protein 99.0 2E-09 4.4E-14 103.4 11.8 117 17-146 148-268 (300)
130 PHA03411 putative methyltransf 99.0 2.6E-09 5.7E-14 101.5 12.2 100 32-140 63-182 (279)
131 PRK10901 16S rRNA methyltransf 99.0 3.2E-09 6.9E-14 109.0 13.8 114 28-145 239-376 (427)
132 PRK14903 16S rRNA methyltransf 99.0 2.3E-09 5E-14 109.9 12.6 114 29-146 233-371 (431)
133 PF00891 Methyltransf_2: O-met 99.0 5.6E-09 1.2E-13 99.0 13.7 107 23-142 90-200 (241)
134 PRK14904 16S rRNA methyltransf 99.0 2.4E-09 5.3E-14 110.5 12.1 113 28-146 245-382 (445)
135 PF06325 PrmA: Ribosomal prote 99.0 3.3E-09 7E-14 102.8 12.0 124 15-154 145-272 (295)
136 PRK14902 16S rRNA methyltransf 99.0 4.5E-09 9.9E-14 108.5 13.2 113 28-144 245-382 (444)
137 TIGR00563 rsmB ribosomal RNA s 99.0 4.4E-09 9.4E-14 108.0 12.9 116 27-146 232-373 (426)
138 PRK04457 spermidine synthase; 99.0 4.8E-09 1E-13 100.6 12.0 110 32-146 65-182 (262)
139 PLN02781 Probable caffeoyl-CoA 98.9 9.6E-09 2.1E-13 96.9 12.3 114 18-140 56-177 (234)
140 KOG2940|consensus 98.9 2.5E-09 5.3E-14 97.1 7.8 114 33-153 72-186 (325)
141 TIGR00417 speE spermidine synt 98.9 2.5E-08 5.5E-13 96.2 15.3 105 31-140 70-185 (270)
142 PHA03412 putative methyltransf 98.9 6.3E-09 1.4E-13 96.7 10.5 98 33-136 49-158 (241)
143 PF05724 TPMT: Thiopurine S-me 98.9 9E-09 1.9E-13 95.8 11.0 116 19-141 23-155 (218)
144 KOG2904|consensus 98.9 2.7E-08 5.9E-13 92.8 12.0 125 15-142 127-286 (328)
145 PRK10909 rsmD 16S rRNA m(2)G96 98.9 2.3E-08 5E-13 91.7 11.6 122 14-142 33-160 (199)
146 PF01739 CheR: CheR methyltran 98.8 1.6E-08 3.6E-13 92.4 10.2 118 20-140 18-174 (196)
147 PRK13168 rumA 23S rRNA m(5)U19 98.8 2.4E-08 5.2E-13 103.1 12.3 118 14-141 278-400 (443)
148 PRK15128 23S rRNA m(5)C1962 me 98.8 6.1E-08 1.3E-12 98.1 13.6 104 33-141 220-339 (396)
149 KOG2899|consensus 98.8 4E-08 8.7E-13 90.2 10.7 106 31-139 56-207 (288)
150 PF06080 DUF938: Protein of un 98.8 4.6E-08 1E-12 89.0 10.7 128 7-141 3-141 (204)
151 PRK11783 rlmL 23S rRNA m(2)G24 98.8 4.6E-08 1E-12 106.3 12.6 103 33-141 538-656 (702)
152 KOG3191|consensus 98.8 1.4E-07 3.1E-12 83.0 13.1 126 26-157 36-184 (209)
153 PF10294 Methyltransf_16: Puta 98.8 6.6E-08 1.4E-12 87.0 11.2 122 17-142 22-157 (173)
154 PRK01581 speE spermidine synth 98.8 4.1E-08 8.9E-13 96.8 10.6 105 31-140 148-267 (374)
155 PLN02672 methionine S-methyltr 98.8 3.6E-08 7.9E-13 109.6 11.2 125 15-146 99-282 (1082)
156 COG4122 Predicted O-methyltran 98.8 6.9E-08 1.5E-12 89.1 11.3 116 16-140 45-165 (219)
157 PF05891 Methyltransf_PK: AdoM 98.8 7.2E-08 1.6E-12 88.2 11.0 144 33-211 55-203 (218)
158 PLN02366 spermidine synthase 98.8 6.4E-08 1.4E-12 94.7 11.4 106 31-140 89-205 (308)
159 COG3963 Phospholipid N-methylt 98.7 1.4E-07 3E-12 82.0 11.8 119 21-143 36-158 (194)
160 PRK03522 rumB 23S rRNA methylu 98.7 1.8E-07 3.8E-12 92.3 14.2 115 17-141 157-274 (315)
161 PF02390 Methyltransf_4: Putat 98.7 6E-08 1.3E-12 88.9 9.6 103 36-142 20-134 (195)
162 PLN02476 O-methyltransferase 98.7 1.4E-07 3E-12 90.6 12.4 116 16-140 104-227 (278)
163 PF01596 Methyltransf_3: O-met 98.7 7.5E-08 1.6E-12 88.7 9.7 116 16-140 31-154 (205)
164 PRK03612 spermidine synthase; 98.7 1E-07 2.2E-12 100.2 11.8 106 31-141 295-415 (521)
165 PRK00274 ksgA 16S ribosomal RN 98.7 8E-08 1.7E-12 92.8 9.8 89 20-116 29-117 (272)
166 PRK11727 23S rRNA mA1618 methy 98.7 4.5E-07 9.7E-12 89.0 14.8 81 33-117 114-202 (321)
167 PRK14896 ksgA 16S ribosomal RN 98.7 1.7E-07 3.7E-12 89.8 10.9 88 20-117 16-104 (258)
168 PRK10611 chemotaxis methyltran 98.6 9.3E-08 2E-12 92.3 8.7 105 34-140 116-261 (287)
169 COG2263 Predicted RNA methylas 98.6 2.5E-07 5.5E-12 82.3 10.6 74 32-115 44-119 (198)
170 TIGR00479 rumA 23S rRNA (uraci 98.6 3.2E-07 7E-12 94.4 11.0 117 15-140 274-395 (431)
171 COG0220 Predicted S-adenosylme 98.6 5.2E-07 1.1E-11 84.2 11.2 103 35-141 50-164 (227)
172 TIGR00755 ksgA dimethyladenosi 98.6 7.1E-07 1.5E-11 85.3 12.1 87 20-116 16-106 (253)
173 PF12147 Methyltransf_20: Puta 98.5 2.1E-06 4.5E-11 81.5 14.6 136 17-153 118-261 (311)
174 TIGR02085 meth_trns_rumB 23S r 98.5 7E-07 1.5E-11 90.1 12.2 116 16-141 216-334 (374)
175 COG1352 CheR Methylase of chem 98.5 8.3E-07 1.8E-11 84.7 11.7 105 33-140 96-240 (268)
176 PF05148 Methyltransf_8: Hypot 98.5 2.6E-07 5.7E-12 83.7 7.8 102 20-143 58-160 (219)
177 PLN02589 caffeoyl-CoA O-methyl 98.5 9.8E-07 2.1E-11 83.6 11.7 116 16-140 65-189 (247)
178 PTZ00338 dimethyladenosine tra 98.5 5.7E-07 1.2E-11 87.5 9.4 89 20-118 23-115 (294)
179 TIGR00478 tly hemolysin TlyA f 98.5 2.2E-06 4.8E-11 80.2 12.5 108 18-141 59-171 (228)
180 PF09243 Rsm22: Mitochondrial 98.5 1.8E-06 3.9E-11 83.4 12.0 132 14-152 14-150 (274)
181 KOG1500|consensus 98.4 1.1E-06 2.3E-11 84.3 10.0 108 24-140 168-281 (517)
182 PRK11933 yebU rRNA (cytosine-C 98.4 2.5E-06 5.4E-11 88.0 12.8 113 30-146 110-247 (470)
183 KOG1499|consensus 98.4 1.2E-06 2.6E-11 85.1 9.8 100 32-139 59-165 (346)
184 TIGR00095 RNA methyltransferas 98.4 1.7E-06 3.7E-11 78.9 10.2 118 18-141 33-159 (189)
185 PF05185 PRMT5: PRMT5 arginine 98.4 3.1E-06 6.7E-11 87.0 12.7 101 34-138 187-294 (448)
186 KOG1661|consensus 98.4 1.5E-06 3.2E-11 78.4 9.0 101 31-141 80-193 (237)
187 PRK04148 hypothetical protein; 98.4 4.3E-06 9.3E-11 71.2 11.2 106 24-145 7-113 (134)
188 KOG3045|consensus 98.4 7.7E-07 1.7E-11 82.5 7.0 102 18-143 164-266 (325)
189 COG1092 Predicted SAM-dependen 98.3 4.2E-06 9.2E-11 84.0 11.9 106 34-144 218-339 (393)
190 PF03602 Cons_hypoth95: Conser 98.3 8.7E-07 1.9E-11 80.3 6.2 105 33-142 42-154 (183)
191 PRK00050 16S rRNA m(4)C1402 me 98.3 3.1E-06 6.8E-11 82.0 9.0 93 21-115 7-101 (296)
192 PF10672 Methyltrans_SAM: S-ad 98.3 8.6E-06 1.9E-10 78.6 11.8 117 16-143 112-240 (286)
193 PF03141 Methyltransf_29: Puta 98.3 6.8E-07 1.5E-11 90.6 4.2 112 18-143 98-221 (506)
194 COG0293 FtsJ 23S rRNA methylas 98.2 1.5E-05 3.2E-10 72.7 12.1 125 17-151 28-169 (205)
195 PLN02823 spermine synthase 98.2 8.6E-06 1.9E-10 80.7 11.3 104 32-140 102-219 (336)
196 COG0030 KsgA Dimethyladenosine 98.2 9E-06 1.9E-10 77.0 10.4 91 20-117 17-108 (259)
197 KOG3420|consensus 98.2 3.6E-06 7.9E-11 71.5 6.9 93 17-116 32-126 (185)
198 PF01170 UPF0020: Putative RNA 98.2 1.1E-05 2.3E-10 73.0 10.4 106 24-133 19-143 (179)
199 KOG0820|consensus 98.2 7.7E-06 1.7E-10 76.6 9.4 87 20-116 45-135 (315)
200 PRK05031 tRNA (uracil-5-)-meth 98.2 9.5E-06 2E-10 81.6 10.9 117 13-141 187-320 (362)
201 COG2521 Predicted archaeal met 98.2 2.8E-06 6E-11 77.8 6.1 109 28-141 129-245 (287)
202 PRK04338 N(2),N(2)-dimethylgua 98.2 9.1E-06 2E-10 82.0 10.4 98 33-140 57-157 (382)
203 COG1041 Predicted DNA modifica 98.2 1.7E-05 3.6E-10 77.6 11.7 111 24-142 188-311 (347)
204 COG0421 SpeE Spermidine syntha 98.2 1.6E-05 3.6E-10 76.6 11.2 102 34-140 77-189 (282)
205 TIGR02143 trmA_only tRNA (urac 98.2 1.2E-05 2.6E-10 80.5 10.7 115 15-141 180-311 (353)
206 PRK01544 bifunctional N5-gluta 98.1 1E-05 2.2E-10 84.7 10.0 105 33-141 347-462 (506)
207 PF08123 DOT1: Histone methyla 98.1 1.3E-05 2.9E-10 73.8 8.7 116 20-139 29-156 (205)
208 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 1.9E-05 4.2E-10 74.9 9.9 119 20-142 41-200 (256)
209 PF02527 GidB: rRNA small subu 98.1 4.5E-05 9.7E-10 69.1 11.8 94 36-140 51-147 (184)
210 COG0144 Sun tRNA and rRNA cyto 98.1 3.9E-05 8.4E-10 76.9 12.3 119 27-146 150-293 (355)
211 KOG1331|consensus 98.1 4.7E-06 1E-10 78.8 4.9 98 33-143 45-145 (293)
212 COG0500 SmtA SAM-dependent met 98.0 7.9E-05 1.7E-09 63.2 12.0 103 37-145 52-159 (257)
213 PRK00536 speE spermidine synth 98.0 5.6E-05 1.2E-09 72.1 11.8 95 30-140 69-170 (262)
214 PF01564 Spermine_synth: Sperm 98.0 3.6E-05 7.9E-10 73.1 10.4 106 32-141 75-191 (246)
215 PF11968 DUF3321: Putative met 98.0 3.1E-05 6.6E-10 70.9 8.9 91 35-143 53-151 (219)
216 KOG2915|consensus 98.0 7.3E-05 1.6E-09 70.2 11.4 108 23-138 95-206 (314)
217 COG0742 N6-adenine-specific me 98.0 7.2E-05 1.6E-09 67.3 10.9 119 18-141 26-154 (187)
218 TIGR03439 methyl_EasF probable 98.0 0.00014 3E-09 71.5 13.8 116 24-141 69-197 (319)
219 KOG3178|consensus 98.0 2.9E-05 6.3E-10 75.7 8.9 96 35-142 179-276 (342)
220 TIGR00308 TRM1 tRNA(guanine-26 97.9 7.1E-05 1.5E-09 75.3 11.4 129 5-141 16-147 (374)
221 PF01269 Fibrillarin: Fibrilla 97.9 0.00013 2.8E-09 67.1 11.7 108 27-141 67-178 (229)
222 PF00398 RrnaAD: Ribosomal RNA 97.9 0.00017 3.6E-09 69.3 13.2 103 19-129 16-119 (262)
223 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 1.4E-05 3.1E-10 77.5 5.8 115 29-146 81-224 (283)
224 PF02384 N6_Mtase: N-6 DNA Met 97.9 4.1E-05 9E-10 75.3 9.1 121 19-142 32-184 (311)
225 COG2265 TrmA SAM-dependent met 97.9 0.00021 4.6E-09 73.1 14.3 123 11-141 271-396 (432)
226 KOG1709|consensus 97.8 0.00017 3.7E-09 65.5 10.7 121 13-139 82-204 (271)
227 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.0011 2.5E-08 72.3 19.4 121 20-141 176-347 (702)
228 PF02475 Met_10: Met-10+ like- 97.8 5.6E-05 1.2E-09 69.3 7.7 96 32-138 100-199 (200)
229 KOG3987|consensus 97.8 6.3E-06 1.4E-10 74.1 0.7 94 34-141 113-207 (288)
230 KOG1663|consensus 97.7 0.00045 9.8E-09 63.6 11.8 115 17-140 60-182 (237)
231 KOG1269|consensus 97.7 6.4E-05 1.4E-09 75.0 6.8 102 32-140 109-214 (364)
232 PF07942 N2227: N2227-like pro 97.7 0.0015 3.3E-08 62.4 15.8 161 18-211 37-244 (270)
233 TIGR02987 met_A_Alw26 type II 97.7 0.00028 6E-09 74.7 11.7 83 33-115 31-123 (524)
234 PF03059 NAS: Nicotianamine sy 97.7 0.00052 1.1E-08 65.8 12.4 103 34-140 121-229 (276)
235 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00029 6.4E-09 70.5 10.5 99 10-114 174-288 (352)
236 PF14314 Methyltrans_Mon: Viru 97.7 0.00085 1.8E-08 71.3 14.2 106 183-295 395-505 (675)
237 PF04672 Methyltransf_19: S-ad 97.6 0.00041 8.8E-09 65.9 10.4 124 20-145 54-194 (267)
238 KOG3201|consensus 97.6 6.8E-05 1.5E-09 65.0 4.5 127 17-146 12-145 (201)
239 COG5459 Predicted rRNA methyla 97.6 0.00022 4.7E-09 69.2 8.2 137 14-152 94-236 (484)
240 COG0357 GidB Predicted S-adeno 97.6 0.00047 1E-08 63.7 10.1 95 34-139 68-166 (215)
241 COG0116 Predicted N6-adenine-s 97.6 0.0007 1.5E-08 67.3 11.5 119 19-140 177-343 (381)
242 KOG4589|consensus 97.6 0.00057 1.2E-08 60.8 9.6 113 24-146 59-189 (232)
243 PF13578 Methyltransf_24: Meth 97.5 8.9E-05 1.9E-09 60.7 3.5 100 38-140 1-104 (106)
244 COG1189 Predicted rRNA methyla 97.5 0.0018 3.8E-08 60.2 12.2 110 22-141 67-178 (245)
245 PF09445 Methyltransf_15: RNA 97.4 0.00019 4.2E-09 63.4 5.2 74 36-115 2-80 (163)
246 COG3897 Predicted methyltransf 97.4 0.00097 2.1E-08 59.9 9.4 101 33-144 79-182 (218)
247 COG2520 Predicted methyltransf 97.4 0.0011 2.3E-08 65.5 10.5 102 32-144 187-292 (341)
248 PF13679 Methyltransf_32: Meth 97.4 0.0017 3.7E-08 56.2 10.5 102 32-144 24-134 (141)
249 KOG1122|consensus 97.4 0.00074 1.6E-08 67.2 8.4 114 29-145 237-375 (460)
250 PRK11760 putative 23S rRNA C24 97.3 0.0019 4.2E-08 63.4 11.1 87 32-134 210-296 (357)
251 COG1889 NOP1 Fibrillarin-like 97.3 0.0025 5.4E-08 57.6 10.4 110 27-141 70-180 (231)
252 PLN02668 indole-3-acetate carb 97.3 0.0025 5.5E-08 64.0 11.8 142 3-145 26-241 (386)
253 COG4076 Predicted RNA methylas 97.3 0.00054 1.2E-08 61.0 6.0 96 34-139 33-133 (252)
254 TIGR00006 S-adenosyl-methyltra 97.3 0.0012 2.6E-08 64.3 8.8 92 21-115 8-103 (305)
255 KOG2352|consensus 97.2 0.0039 8.4E-08 63.5 12.0 104 33-143 47-163 (482)
256 KOG2187|consensus 97.2 0.0008 1.7E-08 68.7 6.7 74 17-95 367-443 (534)
257 KOG2198|consensus 97.0 0.01 2.2E-07 58.6 12.6 118 29-146 151-301 (375)
258 PF05971 Methyltransf_10: Prot 97.0 0.0036 7.7E-08 60.7 9.2 82 34-118 103-191 (299)
259 KOG1098|consensus 97.0 0.00027 5.9E-09 73.0 1.4 114 14-138 25-155 (780)
260 PF07091 FmrO: Ribosomal RNA m 96.9 0.0065 1.4E-07 57.1 9.6 104 32-143 104-210 (251)
261 COG4798 Predicted methyltransf 96.9 0.0018 3.9E-08 58.1 5.6 118 22-146 37-171 (238)
262 TIGR01444 fkbM_fam methyltrans 96.8 0.0032 7E-08 54.1 6.5 56 36-94 1-59 (143)
263 KOG3115|consensus 96.7 0.0096 2.1E-07 53.9 8.6 104 34-141 61-183 (249)
264 KOG2730|consensus 96.5 0.0038 8.2E-08 57.1 5.1 97 33-135 94-196 (263)
265 COG4262 Predicted spermidine s 96.5 0.022 4.7E-07 56.0 10.3 104 33-141 289-407 (508)
266 PRK11188 rrmJ 23S rRNA methylt 96.5 0.0076 1.6E-07 55.8 7.0 52 103-154 116-178 (209)
267 COG0275 Predicted S-adenosylme 96.4 0.018 3.9E-07 55.4 9.0 91 20-112 10-104 (314)
268 PF06962 rRNA_methylase: Putat 96.4 0.018 4E-07 49.4 8.0 83 62-146 1-97 (140)
269 PF01795 Methyltransf_5: MraW 96.3 0.014 3E-07 57.0 8.1 89 21-112 8-101 (310)
270 PF03492 Methyltransf_7: SAM d 96.3 0.025 5.3E-07 56.3 9.8 123 21-146 4-188 (334)
271 PF04989 CmcI: Cephalosporin h 96.1 0.028 6.1E-07 51.5 8.2 116 20-141 22-147 (206)
272 PF04816 DUF633: Family of unk 96.0 0.065 1.4E-06 49.4 10.5 96 37-140 1-100 (205)
273 PF01861 DUF43: Protein of unk 96.0 0.24 5.1E-06 46.5 14.1 103 33-141 44-149 (243)
274 PF06460 NSP13: Coronavirus NS 96.0 0.022 4.7E-07 53.4 6.9 95 199-295 119-213 (299)
275 KOG2793|consensus 96.0 0.045 9.8E-07 51.7 9.2 106 33-142 86-200 (248)
276 PRK10742 putative methyltransf 95.9 0.03 6.5E-07 52.8 7.6 87 24-117 77-177 (250)
277 KOG1099|consensus 95.9 0.021 4.7E-07 52.6 6.3 117 17-142 25-164 (294)
278 KOG1596|consensus 95.8 0.055 1.2E-06 50.3 8.6 108 26-141 149-261 (317)
279 KOG4058|consensus 95.5 0.034 7.4E-07 47.8 5.8 110 18-139 57-170 (199)
280 COG0286 HsdM Type I restrictio 95.5 0.11 2.3E-06 54.5 10.7 121 20-141 173-326 (489)
281 PF11599 AviRa: RRNA methyltra 95.5 0.023 5E-07 52.0 4.9 64 16-80 34-97 (246)
282 PF03141 Methyltransf_29: Puta 94.8 0.049 1.1E-06 56.0 5.8 94 35-141 367-467 (506)
283 COG3129 Predicted SAM-dependen 94.8 0.13 2.7E-06 47.8 7.7 82 33-117 78-166 (292)
284 PF06859 Bin3: Bicoid-interact 94.8 0.021 4.5E-07 46.7 2.4 37 104-140 1-43 (110)
285 COG1064 AdhP Zn-dependent alco 94.7 0.17 3.8E-06 50.0 9.2 99 29-143 162-261 (339)
286 KOG2798|consensus 94.6 0.12 2.6E-06 50.0 7.5 38 103-140 258-295 (369)
287 cd08283 FDH_like_1 Glutathione 94.6 0.13 2.8E-06 52.2 8.2 108 28-141 179-306 (386)
288 KOG2539|consensus 94.3 0.13 2.8E-06 52.3 7.2 113 33-146 200-320 (491)
289 KOG0024|consensus 94.1 0.31 6.8E-06 47.5 9.0 110 27-145 163-277 (354)
290 TIGR00438 rrmJ cell division p 93.9 0.17 3.8E-06 45.7 6.9 113 30-152 29-157 (188)
291 COG2384 Predicted SAM-dependen 93.9 1.1 2.3E-05 41.5 11.7 108 22-139 7-118 (226)
292 PF02005 TRM: N2,N2-dimethylgu 93.6 0.45 9.8E-06 48.1 9.7 101 33-141 49-154 (377)
293 PF02636 Methyltransf_28: Puta 93.4 0.39 8.5E-06 45.7 8.6 77 34-118 19-109 (252)
294 PF01555 N6_N4_Mtase: DNA meth 93.4 0.22 4.7E-06 45.9 6.7 54 19-78 178-231 (231)
295 PRK11524 putative methyltransf 93.4 0.21 4.6E-06 48.5 6.8 56 19-80 195-250 (284)
296 COG1063 Tdh Threonine dehydrog 93.4 0.42 9E-06 47.9 9.1 104 32-143 167-271 (350)
297 COG4627 Uncharacterized protei 93.1 0.047 1E-06 47.4 1.4 53 100-152 43-97 (185)
298 COG4301 Uncharacterized conser 92.7 1.5 3.2E-05 41.3 10.8 109 32-141 77-193 (321)
299 KOG1562|consensus 92.7 0.56 1.2E-05 45.2 8.2 107 31-141 119-236 (337)
300 PHA01634 hypothetical protein 92.6 0.58 1.3E-05 39.4 7.2 44 33-80 28-71 (156)
301 KOG2920|consensus 92.3 0.093 2E-06 50.2 2.6 103 32-140 115-233 (282)
302 KOG0822|consensus 92.3 0.37 7.9E-06 49.8 6.8 103 34-139 368-476 (649)
303 KOG3924|consensus 92.0 0.46 1E-05 47.5 6.9 126 11-140 170-307 (419)
304 PF11312 DUF3115: Protein of u 91.9 0.68 1.5E-05 45.1 7.9 107 35-142 88-243 (315)
305 PF03269 DUF268: Caenorhabditi 91.7 0.3 6.6E-06 42.8 4.7 101 34-144 2-114 (177)
306 PF07757 AdoMet_MTase: Predict 91.4 0.31 6.8E-06 39.7 4.2 32 33-69 58-89 (112)
307 PRK09424 pntA NAD(P) transhydr 91.3 1.4 3.1E-05 46.2 10.1 103 32-141 163-285 (509)
308 PRK13699 putative methylase; P 90.9 0.71 1.5E-05 43.3 6.9 55 20-80 151-205 (227)
309 PF04445 SAM_MT: Putative SAM- 90.9 0.43 9.4E-06 44.7 5.3 85 25-116 65-163 (234)
310 COG1565 Uncharacterized conser 90.5 1 2.3E-05 44.7 7.7 57 24-80 68-129 (370)
311 cd00315 Cyt_C5_DNA_methylase C 90.4 0.93 2E-05 43.8 7.4 72 36-115 2-73 (275)
312 PRK14902 16S rRNA methyltransf 89.9 2.1 4.5E-05 44.4 9.9 92 176-274 302-409 (444)
313 COG1867 TRM1 N2,N2-dimethylgua 89.7 2 4.4E-05 42.7 9.1 129 5-146 28-159 (380)
314 cd08254 hydroxyacyl_CoA_DH 6-h 89.6 4.1 8.9E-05 39.7 11.5 98 30-141 162-263 (338)
315 PRK09880 L-idonate 5-dehydroge 89.5 2 4.3E-05 42.6 9.2 98 29-141 165-266 (343)
316 PTZ00146 fibrillarin; Provisio 89.4 10 0.00022 36.9 13.5 81 175-273 181-271 (293)
317 COG1062 AdhC Zn-dependent alco 86.9 11 0.00023 37.4 11.9 178 24-245 176-360 (366)
318 PRK05808 3-hydroxybutyryl-CoA 86.6 10 0.00022 36.5 11.9 182 36-242 5-207 (282)
319 COG3510 CmcI Cephalosporin hyd 85.4 3.4 7.4E-05 37.5 7.0 106 33-141 69-180 (237)
320 PRK11524 putative methyltransf 85.2 1.2 2.6E-05 43.2 4.6 56 84-140 8-79 (284)
321 PF05711 TylF: Macrocin-O-meth 85.0 7 0.00015 37.1 9.5 119 22-144 62-215 (248)
322 KOG2651|consensus 84.9 3 6.6E-05 41.6 7.1 53 22-78 141-194 (476)
323 PLN02545 3-hydroxybutyryl-CoA 84.2 21 0.00046 34.5 12.9 182 35-243 5-209 (295)
324 PF02254 TrkA_N: TrkA-N domain 84.1 6.8 0.00015 31.9 8.1 92 42-141 4-96 (116)
325 PF06016 Reovirus_L2: Reovirus 83.8 3 6.6E-05 47.6 7.4 105 193-301 561-667 (1289)
326 KOG0022|consensus 83.5 23 0.00051 34.8 12.2 179 25-246 184-370 (375)
327 cd05188 MDR Medium chain reduc 83.5 5.8 0.00012 37.0 8.4 95 32-141 133-232 (271)
328 PF00145 DNA_methylase: C-5 cy 83.4 2.7 5.9E-05 41.0 6.3 71 36-115 2-72 (335)
329 PRK07819 3-hydroxybutyryl-CoA 83.1 27 0.00058 33.9 13.0 184 35-243 6-212 (286)
330 cd08230 glucose_DH Glucose deh 82.9 6.7 0.00014 39.0 9.0 95 31-141 170-269 (355)
331 PF11899 DUF3419: Protein of u 82.2 2.9 6.4E-05 42.3 6.1 71 71-144 265-337 (380)
332 KOG2352|consensus 82.1 2.1 4.6E-05 44.1 5.0 110 33-146 295-421 (482)
333 TIGR02822 adh_fam_2 zinc-bindi 81.7 17 0.00038 35.7 11.4 94 29-141 161-254 (329)
334 cd08232 idonate-5-DH L-idonate 81.4 8.4 0.00018 37.8 9.0 98 29-140 161-261 (339)
335 PLN03154 putative allyl alcoho 81.1 12 0.00027 37.1 10.1 99 29-141 154-258 (348)
336 COG2813 RsmC 16S RNA G1207 met 80.5 49 0.0011 32.3 13.4 68 203-273 211-287 (300)
337 KOG1501|consensus 80.4 2.7 5.9E-05 42.7 4.9 41 36-80 69-109 (636)
338 PRK07530 3-hydroxybutyryl-CoA 80.2 38 0.00083 32.7 13.0 181 35-242 5-208 (292)
339 PRK07066 3-hydroxybutyryl-CoA 79.9 34 0.00074 33.8 12.5 185 35-243 8-210 (321)
340 COG1748 LYS9 Saccharopine dehy 79.8 5.8 0.00013 40.2 7.1 78 35-115 2-79 (389)
341 cd08281 liver_ADH_like1 Zinc-d 79.7 7.9 0.00017 38.8 8.3 101 27-141 185-290 (371)
342 PRK06035 3-hydroxyacyl-CoA deh 79.7 34 0.00074 33.1 12.4 182 35-242 4-210 (291)
343 TIGR03451 mycoS_dep_FDH mycoth 79.6 8.2 0.00018 38.4 8.3 99 29-141 172-276 (358)
344 PF06460 NSP13: Coronavirus NS 79.2 20 0.00042 34.2 9.8 121 29-163 57-191 (299)
345 TIGR02825 B4_12hDH leukotriene 79.0 20 0.00044 34.8 10.8 97 28-140 133-236 (325)
346 PF01209 Ubie_methyltran: ubiE 78.9 11 0.00025 35.3 8.5 74 176-268 99-172 (233)
347 PRK09260 3-hydroxybutyryl-CoA 78.1 26 0.00055 33.9 11.0 181 36-242 3-206 (288)
348 COG1568 Predicted methyltransf 78.1 18 0.00038 34.9 9.2 101 34-141 153-260 (354)
349 PTZ00357 methyltransferase; Pr 77.7 6.8 0.00015 42.2 7.0 101 36-136 703-830 (1072)
350 KOG2671|consensus 77.3 6.1 0.00013 39.1 6.1 108 28-142 203-355 (421)
351 PF10354 DUF2431: Domain of un 77.1 17 0.00037 32.2 8.6 46 101-146 72-130 (166)
352 TIGR00561 pntA NAD(P) transhyd 76.8 8.4 0.00018 40.5 7.5 100 33-140 163-283 (511)
353 PF00107 ADH_zinc_N: Zinc-bind 76.7 1.3 2.9E-05 36.8 1.4 85 44-143 2-91 (130)
354 PRK06130 3-hydroxybutyryl-CoA 76.5 64 0.0014 31.4 13.4 184 35-243 5-206 (311)
355 KOG1975|consensus 76.1 15 0.00033 36.1 8.4 91 176-290 173-265 (389)
356 PRK08293 3-hydroxybutyryl-CoA 76.0 68 0.0015 30.9 13.3 182 35-242 4-210 (287)
357 COG1255 Uncharacterized protei 75.6 30 0.00066 28.7 8.8 94 34-146 14-107 (129)
358 PF05206 TRM13: Methyltransfer 75.6 8.6 0.00019 36.8 6.7 77 21-99 6-89 (259)
359 PRK05786 fabG 3-ketoacyl-(acyl 75.5 20 0.00044 32.9 9.2 107 33-141 4-135 (238)
360 TIGR03366 HpnZ_proposed putati 75.2 20 0.00044 34.2 9.4 101 28-141 115-218 (280)
361 KOG0821|consensus 74.9 6.8 0.00015 36.3 5.4 72 20-95 37-110 (326)
362 TIGR00027 mthyl_TIGR00027 meth 74.8 30 0.00064 33.1 10.2 104 34-143 82-199 (260)
363 PF08484 Methyltransf_14: C-me 74.6 23 0.00049 31.2 8.7 120 3-140 39-158 (160)
364 cd08237 ribitol-5-phosphate_DH 74.6 20 0.00043 35.5 9.4 95 31-141 161-256 (341)
365 cd08239 THR_DH_like L-threonin 74.4 14 0.00031 36.2 8.3 99 27-141 157-262 (339)
366 PF05175 MTS: Methyltransferas 73.9 6.2 0.00013 34.9 5.0 79 177-273 83-161 (170)
367 cd08295 double_bond_reductase_ 73.6 29 0.00063 34.0 10.3 100 29-140 147-250 (338)
368 cd08245 CAD Cinnamyl alcohol d 73.1 39 0.00084 32.8 11.0 98 29-141 158-256 (330)
369 cd08294 leukotriene_B4_DH_like 72.8 25 0.00054 34.1 9.5 97 28-140 138-240 (329)
370 TIGR00497 hsdM type I restrict 72.3 36 0.00077 35.9 11.0 107 33-141 217-355 (501)
371 PRK10458 DNA cytosine methylas 72.1 23 0.00049 37.0 9.2 58 34-95 88-146 (467)
372 COG0604 Qor NADPH:quinone redu 71.9 21 0.00046 35.3 8.8 103 28-142 137-242 (326)
373 PRK01747 mnmC bifunctional tRN 71.7 12 0.00025 40.9 7.5 106 32-139 56-204 (662)
374 COG2933 Predicted SAM-dependen 71.6 21 0.00047 34.1 8.0 88 31-134 209-296 (358)
375 cd08293 PTGR2 Prostaglandin re 71.6 33 0.00071 33.6 10.1 95 31-140 150-253 (345)
376 PRK13699 putative methylase; P 71.4 5.1 0.00011 37.5 4.0 53 87-140 4-71 (227)
377 PF02153 PDH: Prephenate dehyd 71.3 33 0.0007 32.7 9.6 81 61-154 12-92 (258)
378 cd08261 Zn_ADH7 Alcohol dehydr 71.2 17 0.00037 35.5 8.0 98 28-140 154-257 (337)
379 COG0287 TyrA Prephenate dehydr 71.0 44 0.00095 32.4 10.4 156 35-210 4-172 (279)
380 PLN02366 spermidine synthase 70.7 38 0.00083 33.3 10.1 86 198-290 162-253 (308)
381 PRK09328 N5-glutamine S-adenos 70.7 97 0.0021 29.3 13.5 51 225-277 214-266 (275)
382 PF03514 GRAS: GRAS domain fam 70.1 84 0.0018 31.8 12.7 114 25-139 102-242 (374)
383 KOG0023|consensus 69.5 22 0.00047 35.0 7.8 104 28-146 176-284 (360)
384 KOG1227|consensus 68.8 3.6 7.8E-05 39.9 2.4 92 33-135 194-289 (351)
385 cd00401 AdoHcyase S-adenosyl-L 68.7 32 0.0007 35.3 9.4 100 21-141 188-289 (413)
386 cd08285 NADP_ADH NADP(H)-depen 68.4 20 0.00044 35.3 7.9 100 28-140 161-265 (351)
387 PLN02740 Alcohol dehydrogenase 68.3 25 0.00055 35.3 8.6 101 28-141 193-300 (381)
388 PRK10901 16S rRNA methyltransf 68.1 13 0.00027 38.4 6.5 82 177-264 295-390 (427)
389 PF03686 UPF0146: Uncharacteri 68.1 19 0.00041 30.4 6.2 95 33-146 13-107 (127)
390 COG0270 Dcm Site-specific DNA 68.0 20 0.00043 35.5 7.6 78 34-117 3-80 (328)
391 TIGR03201 dearomat_had 6-hydro 67.8 19 0.00041 35.6 7.5 99 28-141 161-272 (349)
392 PRK14966 unknown domain/N5-glu 67.8 1.5E+02 0.0033 30.5 17.9 192 78-292 204-420 (423)
393 cd08238 sorbose_phosphate_red 67.5 57 0.0012 33.1 11.1 105 29-140 171-287 (410)
394 TIGR02279 PaaC-3OHAcCoADH 3-hy 67.1 1.1E+02 0.0024 32.3 13.3 184 34-243 5-210 (503)
395 PRK11730 fadB multifunctional 66.6 97 0.0021 34.3 13.3 182 35-242 314-517 (715)
396 TIGR00675 dcm DNA-methyltransf 66.3 12 0.00026 36.9 5.6 69 37-114 1-69 (315)
397 COG4123 Predicted O-methyltran 65.8 25 0.00054 33.4 7.3 93 190-282 104-205 (248)
398 cd08234 threonine_DH_like L-th 65.8 51 0.0011 31.9 10.1 100 27-141 153-257 (334)
399 PLN03209 translocon at the inn 65.5 37 0.00079 36.4 9.3 91 22-114 68-169 (576)
400 COG0686 Ald Alanine dehydrogen 65.1 24 0.00052 34.6 7.1 100 34-141 168-268 (371)
401 PF10237 N6-adenineMlase: Prob 64.9 1E+02 0.0022 27.3 12.0 97 33-141 25-123 (162)
402 TIGR00406 prmA ribosomal prote 64.6 21 0.00046 34.6 6.9 60 199-272 223-282 (288)
403 TIGR02437 FadB fatty oxidation 64.1 98 0.0021 34.3 12.7 182 35-242 314-517 (714)
404 PF11899 DUF3419: Protein of u 64.1 17 0.00038 36.8 6.4 49 27-80 29-77 (380)
405 PRK00536 speE spermidine synth 64.0 16 0.00034 35.0 5.8 57 200-272 138-198 (262)
406 PLN02827 Alcohol dehydrogenase 63.8 33 0.00072 34.5 8.5 98 29-141 189-295 (378)
407 PRK07531 bifunctional 3-hydrox 63.7 1.1E+02 0.0024 32.1 12.6 153 35-205 5-177 (495)
408 PRK08268 3-hydroxy-acyl-CoA de 63.7 1.5E+02 0.0033 31.3 13.6 185 34-243 7-212 (507)
409 PRK11154 fadJ multifunctional 63.3 1.7E+02 0.0036 32.4 14.3 183 35-242 310-514 (708)
410 cd08255 2-desacetyl-2-hydroxye 63.1 58 0.0013 30.6 9.7 97 28-141 92-190 (277)
411 PRK10309 galactitol-1-phosphat 62.5 35 0.00075 33.6 8.2 100 29-141 156-260 (347)
412 cd05278 FDH_like Formaldehyde 62.5 30 0.00066 33.8 7.8 97 30-140 164-266 (347)
413 TIGR02440 FadJ fatty oxidation 62.4 2.5E+02 0.0054 31.0 16.5 183 35-242 305-509 (699)
414 PF05050 Methyltransf_21: Meth 61.8 13 0.00029 31.9 4.6 40 39-79 1-42 (167)
415 cd08241 QOR1 Quinone oxidoredu 61.6 53 0.0012 31.1 9.2 99 29-141 135-238 (323)
416 cd08266 Zn_ADH_like1 Alcohol d 61.4 56 0.0012 31.4 9.4 98 28-141 161-265 (342)
417 PF12692 Methyltransf_17: S-ad 60.8 22 0.00048 30.9 5.4 113 18-139 14-132 (160)
418 PF01269 Fibrillarin: Fibrilla 60.3 28 0.00061 32.5 6.4 94 122-250 86-179 (229)
419 PRK08324 short chain dehydroge 60.2 37 0.00081 37.2 8.6 107 33-141 421-557 (681)
420 TIGR01202 bchC 2-desacetyl-2-h 59.8 44 0.00096 32.4 8.3 88 32-141 143-231 (308)
421 KOG1253|consensus 59.8 5.6 0.00012 41.1 1.9 103 33-141 109-216 (525)
422 cd08242 MDR_like Medium chain 59.6 63 0.0014 31.1 9.4 95 27-139 149-243 (319)
423 TIGR02072 BioC biotin biosynth 59.5 1.2E+02 0.0026 27.6 10.9 48 198-256 95-142 (240)
424 cd08300 alcohol_DH_class_III c 58.5 58 0.0012 32.4 9.1 99 28-141 181-288 (368)
425 PRK03659 glutathione-regulated 57.0 36 0.00079 36.7 7.7 98 35-142 401-499 (601)
426 TIGR02818 adh_III_F_hyde S-(hy 56.9 60 0.0013 32.4 8.9 100 28-141 180-287 (368)
427 PRK04457 spermidine synthase; 56.3 65 0.0014 30.8 8.6 66 200-272 135-202 (262)
428 cd05285 sorbitol_DH Sorbitol d 56.1 50 0.0011 32.3 8.1 102 27-141 156-265 (343)
429 TIGR02819 fdhA_non_GSH formald 56.0 86 0.0019 31.7 10.0 106 29-142 181-300 (393)
430 TIGR02441 fa_ox_alpha_mit fatt 55.9 1.4E+02 0.0031 33.1 12.2 183 35-242 336-539 (737)
431 KOG2912|consensus 55.6 40 0.00087 33.2 6.8 75 38-115 107-189 (419)
432 cd08236 sugar_DH NAD(P)-depend 55.5 56 0.0012 31.9 8.3 101 28-141 154-258 (343)
433 COG2910 Putative NADH-flavin r 55.3 19 0.00041 32.7 4.2 87 42-135 7-96 (211)
434 cd05213 NAD_bind_Glutamyl_tRNA 55.3 1E+02 0.0023 30.1 10.1 76 32-117 176-251 (311)
435 PLN02586 probable cinnamyl alc 54.3 79 0.0017 31.4 9.3 96 32-141 182-278 (360)
436 TIGR00563 rsmB ribosomal RNA s 54.3 29 0.00064 35.6 6.2 67 198-264 306-386 (426)
437 cd01065 NAD_bind_Shikimate_DH 54.1 61 0.0013 27.6 7.4 75 33-115 18-92 (155)
438 TIGR01177 conserved hypothetic 53.9 51 0.0011 32.6 7.7 73 177-260 232-305 (329)
439 PRK08265 short chain dehydroge 53.6 89 0.0019 29.2 9.1 78 33-113 5-89 (261)
440 cd08278 benzyl_alcohol_DH Benz 53.5 50 0.0011 32.8 7.7 99 29-141 182-285 (365)
441 cd08233 butanediol_DH_like (2R 53.3 61 0.0013 31.9 8.2 102 27-141 166-272 (351)
442 PF02719 Polysacc_synt_2: Poly 53.2 28 0.00061 33.9 5.5 77 42-118 5-91 (293)
443 PRK04266 fibrillarin; Provisio 52.8 35 0.00076 31.9 6.0 57 175-249 120-176 (226)
444 PF02737 3HCDH_N: 3-hydroxyacy 52.3 1.7E+02 0.0037 26.1 10.2 145 36-201 1-171 (180)
445 PF01488 Shikimate_DH: Shikima 52.1 35 0.00075 28.9 5.4 77 33-116 11-87 (135)
446 PRK09496 trkA potassium transp 52.0 24 0.00053 36.2 5.3 76 33-113 230-306 (453)
447 PF01564 Spermine_synth: Sperm 51.4 78 0.0017 29.9 8.2 95 190-291 139-238 (246)
448 PRK12939 short chain dehydroge 51.2 96 0.0021 28.4 8.8 80 33-114 6-94 (250)
449 TIGR00518 alaDH alanine dehydr 51.1 44 0.00095 33.7 6.8 101 33-141 166-267 (370)
450 cd08296 CAD_like Cinnamyl alco 50.5 59 0.0013 31.7 7.5 97 29-141 159-259 (333)
451 COG0421 SpeE Spermidine syntha 50.3 88 0.0019 30.3 8.4 94 191-292 140-238 (282)
452 TIGR03534 RF_mod_PrmC protein- 50.2 91 0.002 28.9 8.5 51 227-278 195-246 (251)
453 COG5379 BtaA S-adenosylmethion 49.8 63 0.0014 31.5 7.0 73 66-141 292-366 (414)
454 PRK07806 short chain dehydroge 49.6 1.3E+02 0.0028 27.6 9.4 106 33-140 5-133 (248)
455 PF02558 ApbA: Ketopantoate re 49.5 43 0.00092 28.5 5.7 79 60-146 21-106 (151)
456 COG0863 DNA modification methy 49.4 48 0.001 31.8 6.6 56 19-80 209-264 (302)
457 cd05279 Zn_ADH1 Liver alcohol 49.1 1.1E+02 0.0023 30.5 9.2 98 29-141 179-285 (365)
458 PRK08655 prephenate dehydrogen 49.0 1.6E+02 0.0035 30.4 10.6 89 36-139 2-90 (437)
459 cd08243 quinone_oxidoreductase 48.4 1.5E+02 0.0034 28.0 10.1 95 31-141 140-238 (320)
460 cd05288 PGDH Prostaglandin deh 48.2 1.5E+02 0.0033 28.4 10.0 96 30-140 142-243 (329)
461 PRK03562 glutathione-regulated 48.0 56 0.0012 35.5 7.4 98 34-141 400-498 (621)
462 PF03435 Saccharop_dh: Sacchar 47.9 35 0.00076 34.4 5.6 73 37-112 1-75 (386)
463 KOG1197|consensus 47.9 72 0.0016 30.6 7.0 102 27-140 140-244 (336)
464 PRK07326 short chain dehydroge 47.8 55 0.0012 29.9 6.5 60 33-94 5-65 (237)
465 cd08277 liver_alcohol_DH_like 47.5 1.3E+02 0.0028 29.9 9.6 99 28-141 179-286 (365)
466 PF06016 Reovirus_L2: Reovirus 47.0 1.1E+02 0.0024 35.7 9.4 103 30-143 819-929 (1289)
467 PF04989 CmcI: Cephalosporin h 46.3 1.6E+02 0.0035 27.2 9.0 114 104-247 32-145 (206)
468 cd05286 QOR2 Quinone oxidoredu 45.9 1.1E+02 0.0025 28.7 8.7 99 29-141 132-235 (320)
469 TIGR01963 PHB_DH 3-hydroxybuty 45.7 56 0.0012 30.2 6.2 59 35-95 2-62 (255)
470 PLN02896 cinnamyl-alcohol dehy 45.5 56 0.0012 32.3 6.6 81 32-114 8-89 (353)
471 cd05281 TDH Threonine dehydrog 45.4 86 0.0019 30.6 7.8 98 32-141 162-262 (341)
472 PRK07454 short chain dehydroge 45.2 77 0.0017 29.0 7.1 61 33-95 5-67 (241)
473 KOG4174|consensus 45.2 2.6E+02 0.0057 26.7 10.2 131 33-164 56-213 (282)
474 PRK14901 16S rRNA methyltransf 45.1 73 0.0016 32.9 7.4 66 200-265 324-403 (434)
475 KOG2811|consensus 44.8 54 0.0012 32.9 5.9 66 33-99 182-250 (420)
476 PRK06182 short chain dehydroge 44.8 1.1E+02 0.0023 28.8 8.2 75 34-114 3-84 (273)
477 PRK07417 arogenate dehydrogena 44.8 57 0.0012 31.3 6.2 86 36-137 2-87 (279)
478 cd08268 MDR2 Medium chain dehy 44.7 1.4E+02 0.003 28.3 9.1 98 30-141 141-243 (328)
479 PRK10669 putative cation:proto 44.7 29 0.00063 37.0 4.6 96 35-140 418-514 (558)
480 PRK06181 short chain dehydroge 44.6 1E+02 0.0023 28.6 8.0 78 35-114 2-88 (263)
481 cd08301 alcohol_DH_plants Plan 44.3 1.2E+02 0.0026 30.1 8.8 99 28-141 182-289 (369)
482 PLN02781 Probable caffeoyl-CoA 44.3 1.7E+02 0.0036 27.3 9.2 35 199-247 142-176 (234)
483 PRK12829 short chain dehydroge 44.0 75 0.0016 29.5 6.9 61 32-94 9-69 (264)
484 PRK08306 dipicolinate synthase 43.7 2.8E+02 0.006 27.0 10.9 99 24-140 141-240 (296)
485 PLN02427 UDP-apiose/xylose syn 43.6 45 0.00097 33.5 5.6 79 34-113 14-95 (386)
486 PLN02178 cinnamyl-alcohol dehy 43.6 98 0.0021 31.1 8.0 95 32-141 177-273 (375)
487 PLN02823 spermine synthase 43.4 63 0.0014 32.2 6.4 86 199-290 174-267 (336)
488 cd08274 MDR9 Medium chain dehy 43.1 2.1E+02 0.0045 27.8 10.2 96 28-140 172-272 (350)
489 PRK09496 trkA potassium transp 43.1 1.7E+02 0.0036 30.0 9.8 96 36-140 2-98 (453)
490 COG1041 Predicted DNA modifica 42.9 91 0.002 31.1 7.3 84 197-287 260-344 (347)
491 TIGR00138 gidB 16S rRNA methyl 42.8 1.5E+02 0.0033 26.4 8.3 50 176-249 93-142 (181)
492 PF12242 Eno-Rase_NADH_b: NAD( 42.7 67 0.0015 24.6 4.9 52 17-69 22-73 (78)
493 PRK07109 short chain dehydroge 42.6 1.6E+02 0.0035 28.9 9.3 80 33-114 7-95 (334)
494 PRK12548 shikimate 5-dehydroge 42.5 90 0.0019 30.2 7.2 105 33-140 125-235 (289)
495 cd08291 ETR_like_1 2-enoyl thi 42.3 56 0.0012 31.7 5.9 94 33-141 142-242 (324)
496 cd08286 FDH_like_ADH2 formalde 42.3 1.2E+02 0.0027 29.4 8.5 101 30-141 163-266 (345)
497 PLN02514 cinnamyl-alcohol dehy 42.3 1.3E+02 0.0028 29.8 8.7 95 32-141 179-275 (357)
498 COG2521 Predicted archaeal met 42.3 2.2E+02 0.0048 27.0 9.2 83 176-273 186-277 (287)
499 KOG1209|consensus 42.1 1.3E+02 0.0029 28.1 7.6 57 33-94 6-63 (289)
500 PRK05708 2-dehydropantoate 2-r 41.9 2.2E+02 0.0047 27.7 9.9 100 35-146 3-109 (305)
No 1
>KOG1099|consensus
Probab=100.00 E-value=1.9e-52 Score=372.82 Aligned_cols=207 Identities=41% Similarity=0.642 Sum_probs=187.3
Q ss_pred cccceeeeeccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 163 YTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 163 ~~~~r~~~m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
+....+.+|.|++|+.++|+||++.+|.+.|+++|+++++|+|+|||||++||+|++|+|+|.+|+.+||+|++++|++|
T Consensus 77 IVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 77 IVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 44555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCcccccceeEEEeeccCCCCCCCCccCccccccCcccccccccccc
Q psy11646 243 GTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSE 322 (433)
Q Consensus 243 G~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (433)
|+||+|||||++...++.|++.+|++|.++||+|||++|.|+|+||.+|.+|+||+|.+.+|+......+ ..
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~~~~~~~~--------~~ 228 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPLGDLCEDD--------MA 228 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCcccCccccc--------hh
Confidence 9999999999999999999999999999999999999999999999999999999999999887654322 12
Q ss_pred CCccCCCcccceeeecCCC---CCCCccccccCCce-eEeeeeecccccccchhHHHHh
Q psy11646 323 SNKKDVARFISPYHHSKHP---ISEMTALLQSVGFN-IHHCDSNTSSYSYRTVSDLRQA 377 (433)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 377 (433)
.++.+++|.++||+||||| |+|++||.+..+-+ .....+.+..|+|+.+.++++.
T Consensus 229 ~~~~~~~~~i~pf~aCgdl~~~Dsd~tYp~~~~~~s~~~dpvq~p~~p~Yk~al~~k~~ 287 (294)
T KOG1099|consen 229 AELEEPDRVIVPFVACGDLGGYDSDRTYPSEAGESSVSLDPVQPPTAPPYKAALELKSS 287 (294)
T ss_pred ccccCCCceecceEEeccccCCCCCCCCccccCCccccCCCCCCCCchHHHHHHHHhhc
Confidence 3356799999999999999 99999998655544 4556788999999988888764
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.9e-29 Score=227.40 Aligned_cols=159 Identities=30% Similarity=0.494 Sum_probs=144.8
Q ss_pred HHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccce-----------eeeeccccCceEEEccccccchHHH
Q psy11646 124 ISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVR-----------TYRCLLFTGVIQVQGDITKESTIKE 192 (433)
Q Consensus 124 l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r-----------~~~m~pl~gv~~iqgDi~~~~t~~~ 192 (433)
+.+=++++++|..++ +++.+| ++|+++...+ +.+|.|++++.++|+|++.+.+.+.
T Consensus 36 l~~k~~i~~~~~~Vi--DLGAAP-----------GgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 36 LNEKFKLFKPGMVVV--DLGAAP-----------GGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred HHHhcCeecCCCEEE--EcCCCC-----------CcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHH
Confidence 334458888876654 567777 8888876543 3567999999999999999999999
Q ss_pred HHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEe
Q psy11646 193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA 272 (433)
Q Consensus 193 il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~ 272 (433)
+.+.++..++|+|+|||||+++|.+..||+++++|+..|+.+|..+|++||+||+|+|+|.+.+.+++.++.+|+.|.+.
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~ 182 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIF 182 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccceeEEEeeccCCC
Q psy11646 273 KPKSSRNSSIESFIVCQNYRPPK 295 (433)
Q Consensus 273 KP~~sr~~s~E~~~v~~~~~~~~ 295 (433)
||.|||++|+|+|+||.+|++++
T Consensus 183 KP~aSR~~S~E~y~v~~~~~~~~ 205 (205)
T COG0293 183 KPKASRKRSREIYLVAKGFKGKE 205 (205)
T ss_pred cCccccCCCceEEEEEeccccCC
Confidence 99999999999999999998753
No 3
>KOG4589|consensus
Probab=99.96 E-value=1.8e-28 Score=213.18 Aligned_cols=158 Identities=31% Similarity=0.477 Sum_probs=144.8
Q ss_pred HHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccccccee-----------eeeccccCceEEEc-cccccchHHH
Q psy11646 125 SNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT-----------YRCLLFTGVIQVQG-DITKESTIKE 192 (433)
Q Consensus 125 ~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~-----------~~m~pl~gv~~iqg-Di~~~~t~~~ 192 (433)
.+-++.|+||-+++ +.+..| +.|++++.++. ..+.|++|+..+++ |++++.+..+
T Consensus 61 ndKy~~l~p~~~Vl--D~G~AP-----------GsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~k 127 (232)
T KOG4589|consen 61 NDKYRFLRPEDTVL--DCGAAP-----------GSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRK 127 (232)
T ss_pred hhhccccCCCCEEE--EccCCC-----------ChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHH
Confidence 34578999987765 446666 78887776554 44589999999999 9999999999
Q ss_pred HHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEe
Q psy11646 193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA 272 (433)
Q Consensus 193 il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~ 272 (433)
|.+.+...++|+|+|||+|+.||+...||+.+.+||.+++.+|...+.|+|+||||+|.|.+...|...|..+|..|+.+
T Consensus 128 i~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~v 207 (232)
T KOG4589|consen 128 IFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKV 207 (232)
T ss_pred HHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccceeEEEeeccCCC
Q psy11646 273 KPKSSRNSSIESFIVCQNYRPPK 295 (433)
Q Consensus 273 KP~~sr~~s~E~~~v~~~~~~~~ 295 (433)
||.|||.+|+|.|+||++||+..
T Consensus 208 KP~Asr~eS~E~y~v~~~~k~~~ 230 (232)
T KOG4589|consen 208 KPDASRDESAETYLVCLNFKGNV 230 (232)
T ss_pred CCccccccccceeeeeeeccCcC
Confidence 99999999999999999999865
No 4
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.93 E-value=2.4e-24 Score=199.45 Aligned_cols=174 Identities=26% Similarity=0.404 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc
Q psy11646 18 AAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96 (433)
Q Consensus 18 ~~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~ 96 (433)
+...+.++..++. .+++.+|||||||+|.++..+ ++..+.. .+|+|+|+++ |. ..++++++++|+..
T Consensus 35 ~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l-~~~~~~~-~~V~aVDi~~-~~-------~~~~v~~i~~D~~~-- 102 (209)
T PRK11188 35 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYA-VTQIGDK-GRVIACDILP-MD-------PIVGVDFLQGDFRD-- 102 (209)
T ss_pred HHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHH-HHHcCCC-ceEEEEeccc-cc-------CCCCcEEEecCCCC--
Confidence 3344556666666 478899999999999999444 4443322 4999999987 10 11345555555433
Q ss_pred ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccC
Q psy11646 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTG 176 (433)
Q Consensus 97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~g 176 (433)
T Consensus 103 -------------------------------------------------------------------------------- 102 (209)
T PRK11188 103 -------------------------------------------------------------------------------- 102 (209)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHH
Q psy11646 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVV 256 (433)
Q Consensus 177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~ 256 (433)
..+.+++...+....+|+|+||++|..+|....|.+.+..+...+++.+..+|++||.|++|+|++.+..
T Consensus 103 ----------~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~ 172 (209)
T PRK11188 103 ----------ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFD 172 (209)
T ss_pred ----------hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHH
Confidence 2222333333334578999999999999998899999988899999999999999999999999999999
Q ss_pred HHHHHHhcccceeEEecCCCCcccccceeEEEeeccC
Q psy11646 257 CLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293 (433)
Q Consensus 257 ~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~ 293 (433)
.+...++..|..|.+.||.|||.+|+|+|+||+||++
T Consensus 173 ~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 173 EYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred HHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 9999999999999999999999999999999999974
No 5
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=99.91 E-value=2.2e-24 Score=195.67 Aligned_cols=92 Identities=41% Similarity=0.655 Sum_probs=82.0
Q ss_pred CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCcc
Q psy11646 200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRN 279 (433)
Q Consensus 200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~ 279 (433)
.++|+|+|||+|+++|.+..|++.+.+|+..++.+|...|++||+||+|+|.+.+...+...++.+|+.|.+.||.+||+
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~ 169 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRS 169 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBT
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCC
Confidence 57999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cccceeEEEeec
Q psy11646 280 SSIESFIVCQNY 291 (433)
Q Consensus 280 ~s~E~~~v~~~~ 291 (433)
+|+|.|+||+||
T Consensus 170 ~s~E~Ylv~~~f 181 (181)
T PF01728_consen 170 ESSEEYLVCRGF 181 (181)
T ss_dssp TCBEEEEESEEE
T ss_pred CccEEEEEEcCC
Confidence 999999999997
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.87 E-value=9.1e-21 Score=181.30 Aligned_cols=127 Identities=21% Similarity=0.383 Sum_probs=104.8
Q ss_pred CCchhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646 1 MHKATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 1 m~~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
|-+|+.|.+....+...... +++.+...++.+|||||||+|.++ ..++...+. .+++|+|+|+.|++.|+++
T Consensus 1 ~w~~~~y~~~~~~~~~~~~~----ll~~l~~~~~~~vLDlGcG~G~~~-~~l~~~~p~--~~v~gvD~s~~~~~~a~~~- 72 (255)
T PRK14103 1 MWDPDVYLAFADHRGRPFYD----LLARVGAERARRVVDLGCGPGNLT-RYLARRWPG--AVIEALDSSPEMVAAARER- 72 (255)
T ss_pred CCCHHHHHHHHhHhhCHHHH----HHHhCCCCCCCEEEEEcCCCCHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHhc-
Confidence 56789999888777655554 455555677899999999999999 555555554 4899999999999999874
Q ss_pred CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 81 TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 81 ~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
++++.++|+++.. + .++||+|+++.++||++++..++++++++|||||.+++..+
T Consensus 73 ---~~~~~~~d~~~~~-~---~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 73 ---GVDARTGDVRDWK-P---KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred ---CCcEEEcChhhCC-C---CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 6889999987652 2 27899999999999999999999999999999999998754
No 7
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.83 E-value=1.8e-19 Score=172.58 Aligned_cols=127 Identities=31% Similarity=0.585 Sum_probs=104.9
Q ss_pred chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646 3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82 (433)
Q Consensus 3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~ 82 (433)
+|+.|++....+...+..++ ..+...++.+|||||||+|.++ ..++...+. .+++|+|+|+.|++.|+++.
T Consensus 5 ~~~~Y~~~~~~~~~~~~~ll----~~~~~~~~~~vLDiGcG~G~~~-~~la~~~~~--~~v~gvD~s~~~i~~a~~~~-- 75 (258)
T PRK01683 5 NPSLYLKFEDERTRPARDLL----ARVPLENPRYVVDLGCGPGNST-ELLVERWPA--ARITGIDSSPAMLAEARSRL-- 75 (258)
T ss_pred CHHHHHHHHHHhhcHHHHHH----hhCCCcCCCEEEEEcccCCHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHHhC--
Confidence 78999988777765655554 4555577899999999999999 455555544 49999999999999999986
Q ss_pred CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
.++.+..+|+.... +. ++||+|+++.++||+.+...+++++.++|||||.+++..+
T Consensus 76 ~~~~~~~~d~~~~~-~~---~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 76 PDCQFVEADIASWQ-PP---QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCeEEECchhccC-CC---CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 57889999987643 22 6899999999999999999999999999999999988653
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.81 E-value=1.1e-19 Score=169.46 Aligned_cols=132 Identities=27% Similarity=0.456 Sum_probs=106.5
Q ss_pred hhhhhhhhhh----cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh
Q psy11646 4 ATLYETNNSM----QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79 (433)
Q Consensus 4 a~~Y~~~~~~----~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~ 79 (433)
|..|+..+.. +.+.+++ .++..+..++|.+|||||||||.++ ..+++..+. .+++|+|+|+.|++.|+++
T Consensus 21 a~~YD~~n~~~S~g~~~~Wr~---~~i~~~~~~~g~~vLDva~GTGd~a-~~~~k~~g~--g~v~~~D~s~~ML~~a~~k 94 (238)
T COG2226 21 AKKYDLMNDLMSFGLHRLWRR---ALISLLGIKPGDKVLDVACGTGDMA-LLLAKSVGT--GEVVGLDISESMLEVAREK 94 (238)
T ss_pred HHHHHhhcccccCcchHHHHH---HHHHhhCCCCCCEEEEecCCccHHH-HHHHHhcCC--ceEEEEECCHHHHHHHHHH
Confidence 5677776622 2222222 3344444458999999999999999 555555554 4999999999999999999
Q ss_pred cC---CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 80 HT---NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 80 ~~---~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
.. ..+++|+++|++.+|+++ ++||+|++.+.|++++|.+.+|++++|+|||||++++.+...
T Consensus 95 ~~~~~~~~i~fv~~dAe~LPf~D---~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 95 LKKKGVQNVEFVVGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred hhccCccceEEEEechhhCCCCC---CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 82 244999999999988776 999999999999999999999999999999999999887554
No 9
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=154.94 Aligned_cols=145 Identities=25% Similarity=0.456 Sum_probs=120.0
Q ss_pred chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646 3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82 (433)
Q Consensus 3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~ 82 (433)
+++.|.++.....+.+.+++. .+...+..+|.|+|||+|..| .+|.+.+|.. +++|+|.|++|++.|+++.
T Consensus 4 ~p~~Yl~F~~eRtRPa~dLla----~Vp~~~~~~v~DLGCGpGnsT-elL~~RwP~A--~i~GiDsS~~Mla~Aa~rl-- 74 (257)
T COG4106 4 NPDQYLQFEDERTRPARDLLA----RVPLERPRRVVDLGCGPGNST-ELLARRWPDA--VITGIDSSPAMLAKAAQRL-- 74 (257)
T ss_pred CHHHHHHHHHhccCcHHHHHh----hCCccccceeeecCCCCCHHH-HHHHHhCCCC--eEeeccCCHHHHHHHHHhC--
Confidence 788999988887777776654 455567889999999999999 8999999876 9999999999999999987
Q ss_pred CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc--CCchhhHHHhhhcCCCc
Q psy11646 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA--FNPIYDLYEKLSRKPKW 160 (433)
Q Consensus 83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~--~~p~~~~~~~~~~~~~W 160 (433)
++++|..+|+.+...+ ..+|+++++.+++|++|....+..+...|.|||.+.+..+. ..|.+..+........|
T Consensus 75 p~~~f~~aDl~~w~p~----~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~ 150 (257)
T COG4106 75 PDATFEEADLRTWKPE----QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPF 150 (257)
T ss_pred CCCceecccHhhcCCC----CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCch
Confidence 7899999999887433 68999999999999999999999999999999999988654 23444444444443444
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.79 E-value=2.8e-19 Score=168.04 Aligned_cols=134 Identities=28% Similarity=0.482 Sum_probs=84.5
Q ss_pred chhhhhhhhhhcH----HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh
Q psy11646 3 KATLYETNNSMQQ----LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78 (433)
Q Consensus 3 ~a~~Y~~~~~~~~----~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~ 78 (433)
-|..|+..+.... ..+++ .+++.+...++.+|||+|||||.++..++....+.+ +|+|+|+|+.|++.|++
T Consensus 16 ia~~YD~~n~~ls~g~~~~wr~---~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~--~v~~vD~s~~ML~~a~~ 90 (233)
T PF01209_consen 16 IAPRYDRMNDLLSFGQDRRWRR---KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNG--KVVGVDISPGMLEVARK 90 (233)
T ss_dssp ---------------------S---HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHH
T ss_pred HHHHhCCCccccCCcHHHHHHH---HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCcc--EEEEecCCHHHHHHHHH
Confidence 3567777654332 22333 233444557899999999999999944444333444 99999999999999999
Q ss_pred hc---CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 79 HH---TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 79 ~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
+. ...+++++++|+++.++++ ++||.|++.+.++.++|+.+++++++|+|||||++++.+.+.
T Consensus 91 k~~~~~~~~i~~v~~da~~lp~~d---~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 91 KLKREGLQNIEFVQGDAEDLPFPD---NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp HHHHTT--SEEEEE-BTTB--S-T---T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HHHhhCCCCeeEEEcCHHHhcCCC---CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 87 3458999999999988776 999999999999999999999999999999999999987543
No 11
>KOG1098|consensus
Probab=99.79 E-value=1.7e-19 Score=181.55 Aligned_cols=170 Identities=31% Similarity=0.451 Sum_probs=148.8
Q ss_pred HHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccccc-----------ceeeeeccccCceEEEccccccchHHH
Q psy11646 124 ISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQ-----------VRTYRCLLFTGVIQVQGDITKESTIKE 192 (433)
Q Consensus 124 l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~-----------~r~~~m~pl~gv~~iqgDi~~~~t~~~ 192 (433)
+..-+.+|.++-.++ +++..| +.|.+++. ..+.++.|++++..++.||+.......
T Consensus 35 ln~ky~fl~~a~~vl--DLcaAP-----------G~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~ 101 (780)
T KOG1098|consen 35 LNKKYKFLEKAHVVL--DLCAAP-----------GGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSK 101 (780)
T ss_pred HHHHhccccccchhe--eeccCC-----------cHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHH
Confidence 334456666665433 345555 55655543 233567899999999999999999999
Q ss_pred HHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEe
Q psy11646 193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA 272 (433)
Q Consensus 193 il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~ 272 (433)
+...++..++|+|++||+|+|.|.+..|.+.|.+|...|+.+|+..|+.||+||-|+|+..+...++..+.++|.+|...
T Consensus 102 l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~t 181 (780)
T KOG1098|consen 102 LRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEAT 181 (780)
T ss_pred HHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccceeEEEeeccCCCCCCCCccCccc
Q psy11646 273 KPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFT 306 (433)
Q Consensus 273 KP~~sr~~s~E~~~v~~~~~~~~~~~~~~~~~~~ 306 (433)
||.+||+.|.|+|+||.+|..|..-.|++..|-+
T Consensus 182 kp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~ 215 (780)
T KOG1098|consen 182 KPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKL 215 (780)
T ss_pred CChhhhhhccceeeeeecccCccccCccccCHHH
Confidence 9999999999999999999999999998887644
No 12
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.79 E-value=1.4e-17 Score=151.98 Aligned_cols=92 Identities=36% Similarity=0.592 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCcc
Q psy11646 200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRN 279 (433)
Q Consensus 200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr~ 279 (433)
.++|+|+++++|..+|.+..++.........+++.+..+|++||.+++.++++.....++..++..|..+.+.||.+||.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 176 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRK 176 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCc
Confidence 36899999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEeec
Q psy11646 280 SSIESFIVCQNY 291 (433)
Q Consensus 280 ~s~E~~~v~~~~ 291 (433)
.|.|+|+||.+|
T Consensus 177 ~~~~~~~~~~~~ 188 (188)
T TIGR00438 177 RSAEVYIVAKRF 188 (188)
T ss_pred ccceEEEEEecC
Confidence 999999999986
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.73 E-value=4.5e-17 Score=156.15 Aligned_cols=134 Identities=24% Similarity=0.363 Sum_probs=102.9
Q ss_pred chhhhhhhhhhc----HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh
Q psy11646 3 KATLYETNNSMQ----QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78 (433)
Q Consensus 3 ~a~~Y~~~~~~~----~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~ 78 (433)
.|..|+..+..+ ...+++.+ .+.+...++.+|||+|||+|..+ ..+++..+.. .+++|+|+|++|++.|++
T Consensus 42 ~A~~YD~~~~~~s~g~~~~~r~~~---~~~~~~~~~~~VLDlGcGtG~~~-~~la~~~~~~-~~V~gvD~S~~ml~~A~~ 116 (261)
T PLN02233 42 IAPVYDNLNDLLSLGQHRIWKRMA---VSWSGAKMGDRVLDLCCGSGDLA-FLLSEKVGSD-GKVMGLDFSSEQLAVAAS 116 (261)
T ss_pred hhhHHHHhhhhhcCChhHHHHHHH---HHHhCCCCCCEEEEECCcCCHHH-HHHHHHhCCC-CEEEEEECCHHHHHHHHH
Confidence 356677654433 22223222 33445567899999999999988 4454443222 399999999999999987
Q ss_pred hc------CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 79 HH------TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 79 ~~------~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
+. ...++++.++|+++.++++ ++||+|+++.++|+++++..++++++++|||||.+++.+...
T Consensus 117 r~~~~~~~~~~~i~~~~~d~~~lp~~~---~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 117 RQELKAKSCYKNIEWIEGDATDLPFDD---CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred HhhhhhhccCCCeEEEEcccccCCCCC---CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 64 1357999999998877665 899999999999999999999999999999999999987654
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=1.3e-16 Score=127.92 Aligned_cols=95 Identities=29% Similarity=0.604 Sum_probs=81.2
Q ss_pred EEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccch
Q psy11646 38 LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV 117 (433)
Q Consensus 38 LDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~ 117 (433)
||+|||+|..+ ..+++. + +.+++|+|+++.+++.++++....++.+.++|+++.++++ ++||+|++..++||+
T Consensus 1 LdiG~G~G~~~-~~l~~~-~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFA-AALAKR-G--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPD---NSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHH-HHHHHT-T--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-T---T-EEEEEEESHGGGS
T ss_pred CEecCcCCHHH-HHHHhc-c--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccc---ccccccccccceeec
Confidence 89999999999 555544 2 3599999999999999999986677889999999987776 999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEE
Q psy11646 118 QDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 118 ~d~~~~l~~i~~~LkpGG~lll 139 (433)
+++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999875
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.69 E-value=4.4e-16 Score=148.51 Aligned_cols=134 Identities=25% Similarity=0.492 Sum_probs=106.9
Q ss_pred chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646 3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82 (433)
Q Consensus 3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~ 82 (433)
.+..|++.+..|+..+..+++. +...++.+|||+|||+|.++ ..++. .+ .+++++|+|+.|++.|+++.
T Consensus 16 aa~~Y~~~~~~q~~~a~~l~~~----l~~~~~~~vLDiGcG~G~~~-~~l~~---~~-~~v~~~D~s~~~l~~a~~~~-- 84 (251)
T PRK10258 16 AAAHYEQHAELQRQSADALLAM----LPQRKFTHVLDAGCGPGWMS-RYWRE---RG-SQVTALDLSPPMLAQARQKD-- 84 (251)
T ss_pred HHHhHhHHHHHHHHHHHHHHHh----cCccCCCeEEEeeCCCCHHH-HHHHH---cC-CeEEEEECCHHHHHHHHhhC--
Confidence 3567887777777766665544 33346789999999999988 44443 22 59999999999999999885
Q ss_pred CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhH
Q psy11646 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDL 150 (433)
Q Consensus 83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~ 150 (433)
....+.++|++..++++ ++||+|+++.+++|.+++..++.++.++|+|||.++++.++...+.++
T Consensus 85 ~~~~~~~~d~~~~~~~~---~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el 149 (251)
T PRK10258 85 AADHYLAGDIESLPLAT---ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPEL 149 (251)
T ss_pred CCCCEEEcCcccCcCCC---CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHH
Confidence 34578899998866554 789999999999999999999999999999999999988776554443
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.65 E-value=4e-15 Score=140.05 Aligned_cols=117 Identities=23% Similarity=0.378 Sum_probs=96.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc
Q psy11646 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES 99 (433)
Q Consensus 23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~ 99 (433)
..++..+..+++.+|||+|||+|.++. .++...+.. .+++|+|+|+.+++.|+++. ...++++..+|+...+++.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~-~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI-ALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH-HHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 455666667788999999999999984 444443322 49999999999999999876 3357899999998765543
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
++||+|++..++++.++...+++++.++|+|||.+++...+.
T Consensus 113 ---~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 113 ---NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ---CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 789999999999999999999999999999999998876543
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=1.3e-15 Score=126.47 Aligned_cols=102 Identities=30% Similarity=0.641 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecc-cCCcccccccCcEeE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANI-ADQNLESIFLAKFNK 107 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di-~~~~l~~~~~~~fD~ 107 (433)
|+.+|||||||+|.++..+ ++..+. .+++|+|+|+.|++.|+++. ...++++++.|+ .... ..+.||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l-~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIAL-ARLFPG--ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----FLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHH-HHHHTT--SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----TSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHH-HhcCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----cCCCCCE
Confidence 5789999999999999544 443333 59999999999999999998 358999999999 2222 2267999
Q ss_pred EEEcc-cccch---hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 108 IFSFY-CLHWV---QDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 108 Vis~~-~l~~~---~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|++.. ++++. ++...+++++++.|+|||++++..
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999 55433 567889999999999999999864
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.63 E-value=5e-15 Score=145.24 Aligned_cols=105 Identities=20% Similarity=0.379 Sum_probs=88.8
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
++.+|||||||+|.++ ..+++ .+ .+|+|+|+|+.|++.|+++.. ..++++.++|+++.+... ++||+|
T Consensus 131 ~g~~ILDIGCG~G~~s-~~La~---~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~V 202 (322)
T PLN02396 131 EGLKFIDIGCGGGLLS-EPLAR---MG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDAV 202 (322)
T ss_pred CCCEEEEeeCCCCHHH-HHHHH---cC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCEE
Confidence 5779999999999998 45543 22 599999999999999998761 247899999988755433 789999
Q ss_pred EEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
++..+++|+.++..+++++.++|||||.+++.+....
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9999999999999999999999999999999876543
No 19
>KOG1540|consensus
Probab=99.63 E-value=3.8e-15 Score=136.69 Aligned_cols=137 Identities=22% Similarity=0.376 Sum_probs=108.0
Q ss_pred hhhhhhhhhhcHHHHHHHHH-HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCC---CCcEEEEEeCCHHHHHHHHhh
Q psy11646 4 ATLYETNNSMQQLDAAKLLS-QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPK---SVVKLVGLDVSPNMIKHAKNH 79 (433)
Q Consensus 4 a~~Y~~~~~~~~~~~~~ll~-~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~---~~~~v~gvDiS~~~l~~A~~~ 79 (433)
|..|+..+..+..-.+++-. .+...+...++.++||++||||..+..++...... ...+|+++|++|.|+..++++
T Consensus 70 A~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 70 AKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 44566555544433333322 24566666789999999999999998877654332 225899999999999999988
Q ss_pred c------CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 80 H------TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 80 ~------~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
. ...++.|+.+|++++|+++ .+||..++.+.+..+.++++++++++|+|||||++.+.++.
T Consensus 150 a~~~~l~~~~~~~w~~~dAE~LpFdd---~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 150 AKKRPLKASSRVEWVEGDAEDLPFDD---DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred HhhcCCCcCCceEEEeCCcccCCCCC---CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 7 2345899999999988776 99999999999999999999999999999999999987754
No 20
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.63 E-value=5.2e-15 Score=139.33 Aligned_cols=137 Identities=29% Similarity=0.511 Sum_probs=110.1
Q ss_pred chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646 3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82 (433)
Q Consensus 3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~ 82 (433)
.+..|.+....|+..+..+++.+.... ...+.+|||+|||+|.++ ..++...+.. +++++|+++.+++.++++..
T Consensus 5 ~~~~y~~~~~~q~~~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~-~~l~~~~~~~--~~~~~D~~~~~~~~~~~~~~- 79 (240)
T TIGR02072 5 AAKTYDRHAKIQREMAKRLLALLKEKG-IFIPASVLDIGCGTGYLT-RALLKRFPQA--EFIALDISAGMLAQAKTKLS- 79 (240)
T ss_pred hhhchhHHHHHHHHHHHHHHHHhhhhc-cCCCCeEEEECCCccHHH-HHHHHhCCCC--cEEEEeChHHHHHHHHHhcC-
Confidence 346688777788877777776655432 234579999999999998 5555555543 79999999999999998864
Q ss_pred CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCch
Q psy11646 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI 147 (433)
Q Consensus 83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~ 147 (433)
.++.+..+|++..++++ ++||+|++..++||..++..++.++.++|+|||.+++..+.....
T Consensus 80 ~~~~~~~~d~~~~~~~~---~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 80 ENVQFICGDAEKLPLED---SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred CCCeEEecchhhCCCCC---CceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 47889999998866544 789999999999999999999999999999999999987655443
No 21
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.63 E-value=4.5e-15 Score=142.47 Aligned_cols=117 Identities=21% Similarity=0.411 Sum_probs=96.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccc
Q psy11646 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLES 99 (433)
Q Consensus 21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~ 99 (433)
....++..+..+++.+|||||||+|..+. .++... + .+|+|+|+|+.|++.|+++. ...++.+..+|+...++++
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~-~la~~~--~-~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~ 115 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCK-YINEKY--G-AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPE 115 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhH-HHHhhc--C-CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCC
Confidence 35567777778899999999999999884 444322 2 49999999999999999987 3457999999998766554
Q ss_pred cccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 100 IFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
++||+|++..+++|+. ++..++++++++|||||.+++.....
T Consensus 116 ---~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 116 ---NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred ---CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 8999999999888875 78899999999999999999987543
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=3.5e-15 Score=148.41 Aligned_cols=119 Identities=20% Similarity=0.407 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCC-----CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEE
Q psy11646 17 DAAKLLSQYIDQFKW-----TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEF 87 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~-----~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~ 87 (433)
...++++++++.+.. .++.+|||||||+|..+ ..+++.. +.+|+|+|+|+.|++.|+++. ...++++
T Consensus 97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~-~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~ 172 (340)
T PLN02244 97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSS-RYLARKY---GANVKGITLSPVQAARANALAAAQGLSDKVSF 172 (340)
T ss_pred HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHH-HHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEE
Confidence 445667777777765 67889999999999998 4444433 259999999999999998876 2257999
Q ss_pred EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
.++|+.+.++++ ++||+|++..+++|+++...++++++++|||||.+++...
T Consensus 173 ~~~D~~~~~~~~---~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 173 QVADALNQPFED---GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEcCcccCCCCC---CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999998876654 8999999999999999999999999999999999998764
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=3e-15 Score=131.74 Aligned_cols=108 Identities=33% Similarity=0.542 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
+.+.+|||+|||+|..+..++....+. .+++|+|+|+.|++.|++++ ...+++|.++|+.+.+-. .. +.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~--~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPG--AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTT--SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCC--CEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC-CCeeEE
Confidence 457899999999999995544344443 49999999999999999975 446899999999884311 11 789999
Q ss_pred EEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
++..+++|..++..+++++.++|++||.+++....
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999988755
No 24
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.62 E-value=8.3e-16 Score=141.13 Aligned_cols=106 Identities=25% Similarity=0.385 Sum_probs=88.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCC--CeEEEEecccCCcccccccCcEeEEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP--KLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~--~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
++.+|||||||-|.++..+ ++ .| ..|+|+|+|+.+++.|+.+.... .+++.+..+++..... ++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~m-Ar---~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~---~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPL-AR---LG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAG---GQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHH-HH---CC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcC---CCccEEEE
Confidence 7899999999999999444 43 33 69999999999999999988333 3557777777643222 79999999
Q ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
..+++|++|++.+++++.+++||||.++++++..+.
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 999999999999999999999999999999877554
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=9e-15 Score=139.87 Aligned_cols=118 Identities=24% Similarity=0.412 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCC
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQ 95 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~ 95 (433)
+-++.+++.+. .++.+|||+|||+|.++..++. . + .+|+|+|+|+.|++.|+++.. ..+++++++|+.+.
T Consensus 32 ~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~-~---g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 32 QDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAE-L---G-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred HHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHH-c---C-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 34556666665 4567999999999999844443 2 2 599999999999999998871 25788999998764
Q ss_pred cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
. ....++||+|++..+++|+.++..+++++.++|||||.+++......
T Consensus 106 ~--~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 106 A--QHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred h--hhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 2 22347899999999999999999999999999999999998765544
No 26
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.58 E-value=1.8e-14 Score=141.88 Aligned_cols=117 Identities=20% Similarity=0.302 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646 19 AKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL 97 (433)
Q Consensus 19 ~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l 97 (433)
..+...+++.+.+ .++.+|||||||+|..+..+ ++..+. .+++++|+|+.|++.|+++....++++..+|+++.++
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~L-a~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~ 174 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGI-VKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPF 174 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHH-HHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCC
Confidence 3444445555544 36789999999999988444 444433 4899999999999999998644678999999987665
Q ss_pred cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+. ++||+|+++.+++++++...++++++++|+|||.+++..
T Consensus 175 ~~---~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 175 PT---DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CC---CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 54 789999999999999999999999999999999998764
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.58 E-value=4.2e-15 Score=141.48 Aligned_cols=105 Identities=23% Similarity=0.463 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.++.+|||||||+|..+.. +++.......+++|+|+|+.|++.|++++. ..++++.++|+.+.++ ..+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~-l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLS-VRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHH-HHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCE
Confidence 4678999999999999844 443221112599999999999999999871 3479999999887543 35899
Q ss_pred EEEcccccchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646 108 IFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 108 Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
|+++.++|++++ ...+++++++.|||||.+++.+.
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999999999853 46789999999999999999863
No 28
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=2.1e-14 Score=136.34 Aligned_cols=122 Identities=21% Similarity=0.324 Sum_probs=103.0
Q ss_pred hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEE
Q psy11646 13 MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFV 88 (433)
Q Consensus 13 ~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~ 88 (433)
.........++.+++++.++||.+|||||||.|..+ ..+++.. +.+|+|+++|+++.+.+++++ +. .+++++
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~-~~aA~~y---~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLA-IYAAEEY---GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHH-HHHHHHc---CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 455677788999999999999999999999999999 4444433 269999999999999999977 32 478888
Q ss_pred EecccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 89 VANIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 89 ~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
..|..+.. +.||-|+|..+++|+.. .+..++.++++|+|||.+++...+.
T Consensus 128 l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 128 LQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred eccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 88877642 56999999999999964 8999999999999999999976554
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.57 E-value=2e-14 Score=138.15 Aligned_cols=129 Identities=19% Similarity=0.356 Sum_probs=95.7
Q ss_pred hhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----C
Q psy11646 6 LYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----T 81 (433)
Q Consensus 6 ~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~ 81 (433)
.|............+.++.+++++..++|.+|||||||.|..+..++. .. + .+|+|+.+|+++.+.|+++. .
T Consensus 35 ~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~-~~--g-~~v~gitlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 35 YFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAE-RY--G-CHVTGITLSEEQAEYARERIREAGL 110 (273)
T ss_dssp --SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHH-HH-----EEEEEES-HHHHHHHHHHHHCSTS
T ss_pred ecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHH-Hc--C-cEEEEEECCHHHHHHHHHHHHhcCC
Confidence 344445555667778899999999999999999999999999955544 32 2 59999999999999999888 2
Q ss_pred CCCeEEEEecccCCcccccccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
..++++...|..+. + .+||.|+|..+++|+ .+....++++.++|+|||.+++...+.
T Consensus 111 ~~~v~v~~~D~~~~--~----~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 111 EDRVEVRLQDYRDL--P----GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp SSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CCceEEEEeecccc--C----CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 35688999887653 2 589999999999999 567899999999999999999876544
No 30
>PRK05785 hypothetical protein; Provisional
Probab=99.57 E-value=5.7e-14 Score=131.77 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=88.2
Q ss_pred chhhhhhhhhhc-----HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHH
Q psy11646 3 KATLYETNNSMQ-----QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77 (433)
Q Consensus 3 ~a~~Y~~~~~~~-----~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~ 77 (433)
-|..|+..+... ....+.++..+.... .++.+|||||||+|..+ ..+++.. + .+++|+|+|++|++.|+
T Consensus 18 iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~-~~l~~~~--~-~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 18 IPKAYDRANRFISFNQDVRWRAELVKTILKYC--GRPKKVLDVAAGKGELS-YHFKKVF--K-YYVVALDYAENMLKMNL 91 (226)
T ss_pred hhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc--CCCCeEEEEcCCCCHHH-HHHHHhc--C-CEEEEECCCHHHHHHHH
Confidence 356677654321 222233444443332 34789999999999998 4444433 2 49999999999999998
Q ss_pred hhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCC
Q psy11646 78 NHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG 134 (433)
Q Consensus 78 ~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG 134 (433)
++. .+.++|++..++++ ++||+|+++.++||++|+++++++++|+|||.
T Consensus 92 ~~~-----~~~~~d~~~lp~~d---~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 92 VAD-----DKVVGSFEALPFRD---KSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hcc-----ceEEechhhCCCCC---CCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 752 45788988877665 89999999999999999999999999999994
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.56 E-value=2.2e-14 Score=126.60 Aligned_cols=110 Identities=25% Similarity=0.458 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL 97 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l 97 (433)
..+++..+... ..++.+|||||||+|.++ ..+++ .+ .+++|+|+++.+++. ........+......
T Consensus 9 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~-~~l~~---~~-~~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 9 YADLLERLLPR--LKPGKRVLDIGCGTGSFL-RALAK---RG-FEVTGVDISPQMIEK-------RNVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHHTC--TTTTSEEEEESSTTSHHH-HHHHH---TT-SEEEEEESSHHHHHH-------TTSEEEEEECHTHHC
T ss_pred HHHHHHHHhcc--cCCCCEEEEEcCCCCHHH-HHHHH---hC-CEEEEEECCHHHHhh-------hhhhhhhhhhhhhhc
Confidence 33444445433 367889999999999998 55553 23 499999999999988 123344443333222
Q ss_pred cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
+ .++||+|+++.+++|++++..+++++.++|||||.+++.++..
T Consensus 75 ~---~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 P---DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp H---SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred c---ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 3 3899999999999999999999999999999999999998765
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.56 E-value=3.3e-14 Score=130.71 Aligned_cols=105 Identities=21% Similarity=0.376 Sum_probs=83.7
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccC
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLA 103 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~ 103 (433)
+.+...++.+|||+|||+|..+ ..+++ .+ .+|+|+|+|+.|++.|+++. ...++++.+.|+.+.+++ +
T Consensus 24 ~~l~~~~~~~vLDiGcG~G~~a-~~La~---~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~ 94 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGNGRNS-LYLAA---NG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD----G 94 (197)
T ss_pred HhcccCCCCcEEEECCCCCHHH-HHHHH---CC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC----C
Confidence 3334456789999999999999 44443 23 59999999999999999876 234588888898765443 6
Q ss_pred cEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646 104 KFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+||+|+++.++|+++ +...+++++.++|+|||.+++.
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 799999999998875 5788999999999999996554
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.56 E-value=9.5e-16 Score=124.75 Aligned_cols=96 Identities=32% Similarity=0.614 Sum_probs=59.6
Q ss_pred EEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C--CCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646 38 LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T--NPKLEFVVANIADQNLESIFLAKFNKIFSFYCL 114 (433)
Q Consensus 38 LDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~--~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l 114 (433)
||||||+|..+..++. ..+. .+++|+|+|+.|++.|++++ . ..+......+..+. ......++||+|++..++
T Consensus 1 LdiGcG~G~~~~~l~~-~~~~--~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLE-ELPD--ARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDL-FDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHH-HC-E--EEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS----CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHH-hCCC--CEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCCh-hhcccccccceehhhhhH
Confidence 7999999999955544 4443 59999999999998888887 2 22333333333222 111112599999999999
Q ss_pred cchhhHHHHHHHHHHhccCCCEE
Q psy11646 115 HWVQDQRQAISNIYNLLMPGGEV 137 (433)
Q Consensus 115 ~~~~d~~~~l~~i~~~LkpGG~l 137 (433)
||++++..++++++++|+|||.+
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999985
No 34
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=1.8e-14 Score=136.46 Aligned_cols=105 Identities=24% Similarity=0.450 Sum_probs=84.8
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.++.+|||+|||+|..+..++. .......+++|+|+|+.|++.|+++.. ..+++++++|+.+.++ ..+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~-~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARR-NINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHH-hcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCE
Confidence 4678999999999999844443 322112599999999999999998861 3478999999987643 35899
Q ss_pred EEEcccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646 108 IFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 108 Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
|++..++||+. +...++++++++|+|||.+++.+.
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99999999985 467899999999999999999864
No 35
>PRK08317 hypothetical protein; Provisional
Probab=99.55 E-value=8.3e-14 Score=131.01 Aligned_cols=117 Identities=30% Similarity=0.532 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccC-CCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL-PKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQN 96 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~-~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~ 96 (433)
.+.+.+.+.+...++.+|||+|||+|.++..+ +... +. .+++|+|+|+.+++.|+++. ...++++...|+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~-a~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDAREL-ARRVGPE--GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHH-HHhcCCC--cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence 34445666777788999999999999998544 4443 33 48999999999999999873 3467899999988765
Q ss_pred ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
++. ++||+|++..+++|+.++..+++++.++|+|||.+++..+
T Consensus 83 ~~~---~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 FPD---GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCC---CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 544 7899999999999999999999999999999999998764
No 36
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.55 E-value=1.3e-13 Score=134.86 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHH---hhc-CCCCeEEEEecccCCcc
Q psy11646 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK---NHH-TNPKLEFVVANIADQNL 97 (433)
Q Consensus 22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~---~~~-~~~~i~~~~~Di~~~~l 97 (433)
...++..+...++.+|||||||+|.++..++. .+...|+|+|+|+.|+..++ +.. ...++.+..+++++.+.
T Consensus 110 ~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~----~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 110 WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLG----HGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHH----cCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence 34566666666789999999999999855543 22247999999999987643 222 34578888888887643
Q ss_pred cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
. .+||+|+|+.+++|..++..++++++++|||||.+++.+.
T Consensus 186 ~----~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 L----YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred C----CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 2 5899999999999999999999999999999999998754
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=6.5e-14 Score=145.81 Aligned_cols=115 Identities=30% Similarity=0.513 Sum_probs=94.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCccccc
Q psy11646 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESI 100 (433)
Q Consensus 23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~ 100 (433)
+.+++.+...++.+|||||||+|..+. .++... + .+++|+|+|+.|++.|+++. ...+++|.++|+...++++
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~-~la~~~--~-~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~- 330 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDF-YMAENF--D-VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPD- 330 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHH-HHHHhc--C-CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCC-
Confidence 345555555678899999999999884 444433 2 48999999999999999876 2357899999998766554
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
++||+|++..+++|++++..++++++++|||||.+++.+...
T Consensus 331 --~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 331 --NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred --CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 789999999999999999999999999999999999986543
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=8.1e-14 Score=127.86 Aligned_cols=107 Identities=23% Similarity=0.323 Sum_probs=82.0
Q ss_pred HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccC
Q psy11646 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLA 103 (433)
Q Consensus 26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~ 103 (433)
.+.+...++.+|||+|||+|..+ ..+++ .+ .+|+|+|+|+.|++.++++. ..-++.+...|+...+++ +
T Consensus 23 ~~~~~~~~~~~vLDiGcG~G~~a-~~la~---~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~ 93 (195)
T TIGR00477 23 REAVKTVAPCKTLDLGCGQGRNS-LYLSL---AG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN----E 93 (195)
T ss_pred HHHhccCCCCcEEEeCCCCCHHH-HHHHH---CC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc----C
Confidence 33344445679999999999999 45543 23 59999999999999998876 222467777777654332 6
Q ss_pred cEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 104 KFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+||+|+++.++|+++ +....+++++++|+|||.+++..
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 799999999999874 56789999999999999966543
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.53 E-value=9.3e-14 Score=134.13 Aligned_cols=108 Identities=21% Similarity=0.377 Sum_probs=89.6
Q ss_pred CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEe
Q psy11646 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFN 106 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD 106 (433)
..+++.+|||+|||+|..+..+ +...... .+++|+|+|+.|++.|+++. ...++++..+|++..++++ ++||
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~-a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~---~~fD 148 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLA-ARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD---NSVD 148 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHH-HHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC---Ccee
Confidence 3468899999999999887433 3332222 38999999999999999875 3458899999998766544 7899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
+|+++.++|+.++...+++++.++|||||++++...
T Consensus 149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999999999999999998754
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=1.8e-13 Score=134.88 Aligned_cols=110 Identities=23% Similarity=0.381 Sum_probs=87.9
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh--hc--CCCCeEEEEecccCCcccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN--HH--TNPKLEFVVANIADQNLES 99 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~--~~--~~~~i~~~~~Di~~~~l~~ 99 (433)
.+...+...++.+|||||||+|.++..++. . +...|+|+|+|+.++..++. +. ...++.+..+|+++.+.
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~-~---g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-- 186 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLG-A---GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-- 186 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHH-c---CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--
Confidence 344455545688999999999999955544 2 22379999999999876443 22 24579999999988655
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.++||+|+|..++||..++..+++++++.|+|||.+++..
T Consensus 187 --~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 --LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred --cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 2789999999999999999999999999999999999864
No 41
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=8.4e-14 Score=113.79 Aligned_cols=95 Identities=34% Similarity=0.614 Sum_probs=72.7
Q ss_pred EEEECCCCChhHHHHhcccCCCC-CcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646 37 VLDVGCGPGNVTSKLLLPNLPKS-VVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFSFYC 113 (433)
Q Consensus 37 VLDIGcG~G~~~~~~l~~~~~~~-~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~ 113 (433)
|||+|||+|..+..++ +.++.+ ..+++|+|+|+.|++.++++. ...++++.++|+.+.+.. .++||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~-~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~---~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA-RRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS---DGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHH-HHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH---SSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHH-HHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc---CCCeeEEEEcCC
Confidence 7999999999995444 443222 159999999999999999998 335899999999885433 379999999554
Q ss_pred -ccchh--hHHHHHHHHHHhccCCC
Q psy11646 114 -LHWVQ--DQRQAISNIYNLLMPGG 135 (433)
Q Consensus 114 -l~~~~--d~~~~l~~i~~~LkpGG 135 (433)
++|+. +...+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 88875 46789999999999998
No 42
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.49 E-value=3.9e-13 Score=135.46 Aligned_cols=122 Identities=22% Similarity=0.303 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEeccc
Q psy11646 14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~ 93 (433)
........+..+++.+..+++.+|||||||+|.++. .+++.. + .+|+|+|+|+.+++.|+++....++++...|..
T Consensus 148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~-~la~~~--g-~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~ 223 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLAR-YAAEHY--G-VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYR 223 (383)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHH-HHHHHC--C-CEEEEEeCCHHHHHHHHHHhccCeEEEEECchh
Confidence 334556677788888888899999999999999984 444332 2 489999999999999999874345777777765
Q ss_pred CCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 94 DQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 94 ~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
.. .++||.|++..+++|+. +....++++.++|||||.+++...+..
T Consensus 224 ~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 224 DL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 42 27899999999999984 467899999999999999999865543
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.48 E-value=2.7e-13 Score=130.06 Aligned_cols=117 Identities=24% Similarity=0.410 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChh----HHHHhcccCCC---CCcEEEEEeCCHHHHHHHHhhc-C----------
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNV----TSKLLLPNLPK---SVVKLVGLDVSPNMIKHAKNHH-T---------- 81 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~----~~~~l~~~~~~---~~~~v~gvDiS~~~l~~A~~~~-~---------- 81 (433)
.++..++......++.+|||+|||+|.- + ..++...+. ...+++|+|+|+.|++.|++.. .
T Consensus 86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA-~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~ 164 (264)
T smart00138 86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLA-MLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKA 164 (264)
T ss_pred HHhHHHHHhcCCCCCEEEEeccccCChHHHHHH-HHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHH
Confidence 3444444433334568999999999963 3 223333322 1258999999999999999864 1
Q ss_pred -------------------CCCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646 82 -------------------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 82 -------------------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~ 140 (433)
..+++|.++|+.+.+.+. ++||+|+|.++++|++ +...+++++++.|+|||++++.
T Consensus 165 ~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~---~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 165 LLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPL---GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCcc---CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 136899999998865433 7899999999999995 4568999999999999999985
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.48 E-value=5.9e-13 Score=120.94 Aligned_cols=99 Identities=25% Similarity=0.267 Sum_probs=80.4
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
+++.+|||+|||+|..+ ..++...+. .+|+|+|+|+.|++.|+++. ...++++.++|+.+.+. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~a-l~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPG-IPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHH-HHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEE
Confidence 45889999999999998 444444444 49999999999999999877 33469999999987543 3789999
Q ss_pred EEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+++. ..+.+.+++.++++|+|||.+++..
T Consensus 117 ~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 117 TSRA----VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEcc----ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 9975 3456789999999999999999875
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.48 E-value=6.5e-13 Score=123.78 Aligned_cols=134 Identities=25% Similarity=0.430 Sum_probs=101.2
Q ss_pred hhhhhhhhhhcHH-HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C
Q psy11646 4 ATLYETNNSMQQL-DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T 81 (433)
Q Consensus 4 a~~Y~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~ 81 (433)
+..|+..+..... ........++..+...++.+|||+|||+|..+..+ ++..+.. .+++++|+++.+++.++++. .
T Consensus 9 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~-~~~~~~~-~~~~~iD~~~~~~~~~~~~~~~ 86 (223)
T TIGR01934 9 APKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIEL-AKSAPDR-GKVTGVDFSSEMLEVAKKKSEL 86 (223)
T ss_pred HhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHH-HHhcCCC-ceEEEEECCHHHHHHHHHHhcc
Confidence 3455554433221 12233445555555567899999999999998544 4444431 48999999999999999886 3
Q ss_pred CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
..++++..+|+.+.+.+. ++||+|+++.++++..+...+++++.++|+|||.+++...
T Consensus 87 ~~~i~~~~~d~~~~~~~~---~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 87 PLNIEFIQADAEALPFED---NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCceEEecchhcCCCCC---CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 457899999998765433 7899999999999999999999999999999999998764
No 46
>KOG1270|consensus
Probab=99.48 E-value=1.4e-13 Score=127.40 Aligned_cols=100 Identities=25% Similarity=0.468 Sum_probs=83.3
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCC----CeEEEEecccCCcccccccCc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNP----KLEFVVANIADQNLESIFLAK 104 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~----~i~~~~~Di~~~~l~~~~~~~ 104 (433)
|.+|||+|||.|-++ .-|++. + .+|+|+|+++.|++.|+++. ... ++++...|++... +.
T Consensus 90 g~~ilDvGCGgGLLS-epLArl---g-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLS-EPLARL---G-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GK 158 (282)
T ss_pred CceEEEeccCccccc-hhhHhh---C-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cc
Confidence 478999999999999 455532 3 69999999999999999987 122 3666667766642 66
Q ss_pred EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
||.|+|..+++|+.|+..++..+.++|||||.+++++...
T Consensus 159 fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 159 FDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred cceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 9999999999999999999999999999999999987543
No 47
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.47 E-value=7.1e-13 Score=124.85 Aligned_cols=117 Identities=25% Similarity=0.445 Sum_probs=94.4
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcc
Q psy11646 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNL 97 (433)
Q Consensus 22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l 97 (433)
...++..+...++.+|||+|||+|.++.. ++...+.. .+++++|+++.+++.+++++. ..++.+...|+...+.
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~-l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIA-LAKAVGKT-GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHH-HHHHcCCC-CeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 34455555556788999999999999844 44444422 599999999999999999872 3568899999887554
Q ss_pred cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
+. ++||+|++..++|+..+....++++.++|+|||.+++....
T Consensus 118 ~~---~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 118 PD---NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CC---CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 33 78999999999999999999999999999999999887643
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.46 E-value=3e-13 Score=126.66 Aligned_cols=101 Identities=25% Similarity=0.442 Sum_probs=84.9
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
.+|||||||+|..+. .+++..+. .+++|+|+|+.+++.|+++. ...++++...|+...+.+ ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~-~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLI-DLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHH-HHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeeh
Confidence 379999999999984 44444443 48999999999999999986 235789999998665433 68999999
Q ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
..+++|+.++...++++.++|+|||.+++...
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999999999999999999999999998764
No 49
>KOG4300|consensus
Probab=99.46 E-value=1e-12 Score=117.22 Aligned_cols=108 Identities=23% Similarity=0.361 Sum_probs=88.6
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeE-EEEecccCCcccccccCcEeEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLE-FVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~-~~~~Di~~~~l~~~~~~~fD~V 108 (433)
....|||||||||..- .+.. .. ++ .+||++|.++.|-+.|.+.+ ...++. |++++.++.+ +..++++|.|
T Consensus 76 ~K~~vLEvgcGtG~Nf-kfy~-~~-p~-~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~--~l~d~s~DtV 149 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANF-KFYP-WK-PI-NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP--QLADGSYDTV 149 (252)
T ss_pred CccceEEecccCCCCc-cccc-CC-CC-ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc--ccccCCeeeE
Confidence 3456899999999986 4432 11 22 58999999999999999888 235666 8899988854 3445999999
Q ss_pred EEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
++..+|...+++.+.++++.++|||||++++.+.+..+
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99999999999999999999999999999999876655
No 50
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.45 E-value=1.4e-12 Score=125.88 Aligned_cols=107 Identities=27% Similarity=0.490 Sum_probs=83.4
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCC-CcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKS-VVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~-~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
.++.+|||+|||+|.++..+ +...+.. ..+++|+|+|+.|++.|+++. +++.+.++|+...++++ ++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~---~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHAL-ADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFAD---QSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHH-HHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcC---CceeEEEE
Confidence 35678999999999998444 4333322 247999999999999999875 67899999998876654 89999998
Q ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY 151 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~ 151 (433)
...- ..++++.++|||||.+++..++....++..
T Consensus 158 ~~~~-------~~~~e~~rvLkpgG~li~~~p~~~~l~el~ 191 (272)
T PRK11088 158 IYAP-------CKAEELARVVKPGGIVITVTPGPRHLFELK 191 (272)
T ss_pred ecCC-------CCHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence 7642 246789999999999999887766655443
No 51
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.45 E-value=1.3e-12 Score=120.68 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF 111 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~ 111 (433)
.++.+|||||||+|..+ ..++...+. .+++|+|+|+.|++.|+++. +++.+.++|+.+ ++++ ++||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~-~~L~~~~~~--~~v~giDiS~~~l~~A~~~~--~~~~~~~~d~~~-~~~~---~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNL-AALKRLLPF--KHIYGVEINEYAVEKAKAYL--PNINIIQGSLFD-PFKD---NFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHH-HHHHHhCCC--CeEEEEECCHHHHHHHHhhC--CCCcEEEeeccC-CCCC---CCEEEEEEC
Confidence 46779999999999998 445544443 48999999999999999875 467888899876 4443 899999999
Q ss_pred ccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646 112 YCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 112 ~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
.+++|+. +...+++++.+++ ++.+++.+.
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 9999884 4577889999987 466666653
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.45 E-value=1.9e-12 Score=109.15 Aligned_cols=110 Identities=16% Similarity=0.328 Sum_probs=83.9
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI 100 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~ 100 (433)
.++..+...++.+|||+|||+|.++..+ ++..+. .+++++|+|+.+++.|+++. ...++++...|+... .+ .
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l-~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~-~ 84 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEA-ARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-LE-D 84 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHH-HHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-Ch-h
Confidence 3455555667789999999999999444 444444 48999999999999998876 335788888887642 11 1
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..++||.|++....+. ...+++++.+.|+|||.+++..
T Consensus 85 ~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 2268999999876553 3588999999999999999865
No 53
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.45 E-value=9.4e-13 Score=117.97 Aligned_cols=104 Identities=25% Similarity=0.468 Sum_probs=80.1
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEeE
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
++...-.++||+|||.|.++ ..|+..+ .+++++|+|+.+++.|+++. ..++|+|.++|+.+.. ++ ++||+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT-~~LA~rC----d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~---~~FDL 109 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLT-ERLAPRC----DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-PE---GRFDL 109 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHH-HHHGGGE----EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----S---S-EEE
T ss_pred cCccccceeEecCCCccHHH-HHHHHhh----CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CC---CCeeE
Confidence 44455678999999999999 5566442 48999999999999999999 5589999999997653 33 89999
Q ss_pred EEEcccccchhh---HHHHHHHHHHhccCCCEEEEEe
Q psy11646 108 IFSFYCLHWVQD---QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 108 Vis~~~l~~~~d---~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|++..+++++.+ ...++.++...|+|||.+++..
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999954 5678999999999999999864
No 54
>PRK06922 hypothetical protein; Provisional
Probab=99.44 E-value=1e-12 Score=137.18 Aligned_cols=109 Identities=18% Similarity=0.385 Sum_probs=86.5
Q ss_pred CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeE
Q psy11646 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.+.++.+|||+|||+|..+ ..+++..+.. +++|+|+|+.|++.|+++. ...++++.++|+.+.+. .+.+++||+
T Consensus 415 d~~~g~rVLDIGCGTG~ls-~~LA~~~P~~--kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~-~fedeSFDv 490 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVML-DMIEEETEDK--RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSS-SFEKESVDT 490 (677)
T ss_pred hhcCCCEEEEeCCCCCHHH-HHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCcc-ccCCCCEEE
Confidence 3446889999999999988 4555555544 9999999999999999876 23467888899876430 123488999
Q ss_pred EEEcccccch-------------hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 108 IFSFYCLHWV-------------QDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 108 Vis~~~l~~~-------------~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
|+++.++|++ .+...++++++++|||||.+++.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999865 2567899999999999999999763
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.43 E-value=1.5e-12 Score=117.95 Aligned_cols=98 Identities=24% Similarity=0.275 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
++.+|||+|||+|..+. .++...+. .+|+|+|+|+.|++.++++. +..+++++++|+++.. . .++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~-~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~---~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGI-PLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-H---EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHH-HHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-c---cCCccEEE
Confidence 48899999999999884 44444444 48999999999999888775 3357999999998752 2 37899999
Q ss_pred EcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+.. ++ +....++.+.++|+|||.+++..
T Consensus 115 s~~-~~---~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LA---SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hh---CHHHHHHHHHHhcCCCCEEEEEc
Confidence 976 44 45567888899999999988764
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.43 E-value=7.5e-13 Score=122.13 Aligned_cols=125 Identities=18% Similarity=0.226 Sum_probs=90.6
Q ss_pred HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecc-cCCcccccc
Q psy11646 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANI-ADQNLESIF 101 (433)
Q Consensus 26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di-~~~~l~~~~ 101 (433)
.+.+.. ++.+|||+|||+|..+. .++...+.. +++|+|+|+.|++.|+++. ...++.++++|+ +..+ ....
T Consensus 34 ~~~~~~-~~~~VLDiGcGtG~~~~-~la~~~p~~--~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-~~~~ 108 (202)
T PRK00121 34 AELFGN-DAPIHLEIGFGKGEFLV-EMAKANPDI--NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-DMFP 108 (202)
T ss_pred HHHcCC-CCCeEEEEccCCCHHHH-HHHHHCCCc--cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-HHcC
Confidence 344433 57899999999999994 455455543 8999999999999999876 336799999998 5432 0122
Q ss_pred cCcEeEEEEcccccchh--------hHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhh
Q psy11646 102 LAKFNKIFSFYCLHWVQ--------DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLS 155 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~--------d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~ 155 (433)
.++||.|+++.+..|.. ....++++++++|||||.+++..............+.
T Consensus 109 ~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 170 (202)
T PRK00121 109 DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLS 170 (202)
T ss_pred ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 37899999987654432 1467899999999999999998655444444444443
No 57
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=1.1e-12 Score=127.60 Aligned_cols=100 Identities=19% Similarity=0.343 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
++.+|||+|||+|..+. .++. .+ .+|+|+|+|+.+++.++++. ...++++...|+....+ .++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~-~la~---~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~----~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSL-YLAL---LG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI----QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHH-HHHH---CC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc----cCCccEEEE
Confidence 45599999999999984 4443 23 59999999999999998877 22368888888876543 378999999
Q ss_pred cccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 111 FYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 111 ~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..++|+++ +...+++++.++|+|||++++..
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999874 57789999999999999977653
No 58
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.42 E-value=5.6e-12 Score=118.83 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=89.9
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccc
Q psy11646 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLES 99 (433)
Q Consensus 22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~ 99 (433)
+..+...+...++.+|||||||+|.++..+.. . + .+++++|+++.+++.|+++. ....+++...|+.+.+ .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~---~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~ 109 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMAR-L---G-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA--A 109 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHH-c---C-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh--h
Confidence 34444444445788999999999999844433 2 2 48999999999999999876 2235677777776532 1
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
...++||+|++..++++..+...+++++.++|+|||.+++..+..
T Consensus 110 ~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 110 EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 123789999999999999999999999999999999999886543
No 59
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=2.8e-12 Score=118.59 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCC
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQ 95 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~ 95 (433)
..+..+++.+..+++.+|||||||+|..+ ..+++..+.. .+|+++|+++.+++.|++++ .. .++++..+|..+.
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~-~~la~~~~~~-g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQA-AVCAEAIERR-GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHH-HHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 44556667777778899999999999999 5555554433 48999999999999999876 22 3588999998764
Q ss_pred cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
... .++||.|++..++++++ .++.+.|+|||++++..
T Consensus 137 ~~~---~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEK---HAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccc---CCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 222 26899999999887664 36789999999998754
No 60
>PRK06202 hypothetical protein; Provisional
Probab=99.41 E-value=2.2e-12 Score=121.56 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=81.4
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCC-C-CcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPK-S-VVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~-~-~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
.++.+|||+|||+|.++.. ++...+. + ..+++|+|+|+.|++.|+++....++++.+.+....+.+ +++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~-L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~---~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAID-LARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAE---GERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHH-HHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccccc---CCCccEEE
Confidence 4678999999999998844 4332211 1 148999999999999999987545677777776654433 37899999
Q ss_pred EcccccchhhH--HHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 110 SFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 110 s~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
++.++||+++. ..+++++.++++ |.+++.+....
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 99999999874 579999999998 55555554443
No 61
>KOG2361|consensus
Probab=99.41 E-value=2e-12 Score=118.22 Aligned_cols=170 Identities=24% Similarity=0.327 Sum_probs=123.9
Q ss_pred HHHHHHHHhcCCC--CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC
Q psy11646 20 KLLSQYIDQFKWT--DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ 95 (433)
Q Consensus 20 ~ll~~l~~~l~~~--~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~ 95 (433)
.++.++-+.+... +..+|||||||.|.....+++-.-..+ ..++++|.||.+++..+++. ...++...+.|+...
T Consensus 56 wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~-l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~ 134 (264)
T KOG2361|consen 56 WLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNR-LKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSP 134 (264)
T ss_pred HHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCC-eEEEEcCCChHHHHHHHhccccchhhhcccceeccch
Confidence 4445555555443 233899999999999877776543333 78999999999999999987 446777778888765
Q ss_pred cccc-cccCcEeEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeec
Q psy11646 96 NLES-IFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCL 172 (433)
Q Consensus 96 ~l~~-~~~~~fD~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~ 172 (433)
.+.. ...+++|.|++.++|..+ +....++.+++++|||||.+++-+.+...+.. .|..+-.
T Consensus 135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq----------------lRF~~~~ 198 (264)
T KOG2361|consen 135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ----------------LRFKKGQ 198 (264)
T ss_pred hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH----------------HhccCCc
Confidence 5333 445899999999999877 35788999999999999999998776544211 1112223
Q ss_pred cccCceEEEcccccc--chHHHHHHhcCCCCCeEEE
Q psy11646 173 LFTGVIQVQGDITKE--STIKEIFSHFDDEKVDLVV 206 (433)
Q Consensus 173 pl~gv~~iqgDi~~~--~t~~~il~~~~~~~~dlVv 206 (433)
-+.+...+++|.|.. -+.+++.++|..++++.+-
T Consensus 199 ~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 199 CISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred eeecceEEccCCceeeeccHHHHHHHHHhcccchhc
Confidence 456667888998864 4678888888887776653
No 62
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.41 E-value=2.9e-12 Score=115.97 Aligned_cols=104 Identities=22% Similarity=0.380 Sum_probs=80.4
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEe
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFN 106 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD 106 (433)
++.-++.++||+|||.|..+ .+|+. .| ..|+++|+|+.+++.+++.+ ..-.++..+.|+++..++ +.||
T Consensus 26 ~~~~~~g~~LDlgcG~GRNa-lyLA~---~G-~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~----~~yD 96 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNA-LYLAS---QG-FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP----EEYD 96 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHH-HHHHH---TT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T----TTEE
T ss_pred HhhcCCCcEEEcCCCCcHHH-HHHHH---CC-CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc----CCcC
Confidence 44446789999999999999 56663 34 79999999999999887766 344588999999876554 6899
Q ss_pred EEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 107 KIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 107 ~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|++..++++++ .....++++...++|||++++..
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 999988888884 46778999999999999988854
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.40 E-value=6.5e-12 Score=112.70 Aligned_cols=118 Identities=28% Similarity=0.451 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCC
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQ 95 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~ 95 (433)
..+|.+.+... ++.+|||+|||+|..+ ..++...+. .+++++|+++.+++.|++++ ...++++...|+...
T Consensus 20 t~lL~~~l~~~---~~~~vLDlG~G~G~i~-~~la~~~~~--~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~ 93 (170)
T PF05175_consen 20 TRLLLDNLPKH---KGGRVLDLGCGSGVIS-LALAKRGPD--AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHHHHH---TTCEEEEETSTTSHHH-HHHHHTSTC--EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT
T ss_pred HHHHHHHHhhc---cCCeEEEecCChHHHH-HHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence 33444444432 6789999999999999 555555554 37999999999999999988 223388999897654
Q ss_pred cccccccCcEeEEEEcccccchhh-----HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 96 NLESIFLAKFNKIFSFYCLHWVQD-----QRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~~~d-----~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
.+ .++||+|+++.+++.-.+ ....++...+.|+|||.+++.......
T Consensus 94 -~~---~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~ 145 (170)
T PF05175_consen 94 -LP---DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLG 145 (170)
T ss_dssp -CC---TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC
T ss_pred -cc---ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCC
Confidence 22 389999999999876643 577899999999999999887654433
No 64
>PLN03075 nicotianamine synthase; Provisional
Probab=99.40 E-value=2.5e-12 Score=123.59 Aligned_cols=104 Identities=22% Similarity=0.352 Sum_probs=84.8
Q ss_pred CCCCEEEEECCCCChhHHHHhc-ccCCCCCcEEEEEeCCHHHHHHHHhhc-C----CCCeEEEEecccCCcccccccCcE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLL-PNLPKSVVKLVGLDVSPNMIKHAKNHH-T----NPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~-~~~~~~~~~v~gvDiS~~~l~~A~~~~-~----~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
.++.+|+|||||+|.++..+++ ...+.+ +++|+|+++++++.|++.+ . ..+++|.++|+.+.... .+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~--~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTT--SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCC--EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCc
Confidence 4778999999999977644444 445554 9999999999999999987 2 35799999998764211 2689
Q ss_pred eEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+|++. +++++ ++..++++++++.|+|||.+++-.
T Consensus 197 DlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999999 88777 688999999999999999998864
No 65
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=4e-12 Score=118.96 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecc
Q psy11646 14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANI 92 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di 92 (433)
+...+..++..+ +.+..+++.+|||+|||+|.++ ..++...+. .+|+|+|+++.|++.+.+++ ...++.++.+|+
T Consensus 54 r~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~-~~la~~v~~--g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~ 129 (226)
T PRK04266 54 RSKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTV-SHVSDIVEE--GVVYAVEFAPRPMRELLEVAEERKNIIPILADA 129 (226)
T ss_pred ccchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHH-HHHHHhcCC--CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC
Confidence 344455555555 5677789999999999999999 555655553 39999999999998776665 336789999998
Q ss_pred cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..........++||+|++..... .....++++++++|||||.++++.
T Consensus 130 ~~~~~~~~l~~~~D~i~~d~~~p--~~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 130 RKPERYAHVVEKVDVIYQDVAQP--NQAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred CCcchhhhccccCCEEEECCCCh--hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75211111225699999643311 122456899999999999999964
No 66
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=4.5e-12 Score=117.80 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCC
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQ 95 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~ 95 (433)
-.+...+++.+..+++.+|||||||+|..+ ..+++..+.. .+++++|+++.+++.|++++ +..++++..+|....
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t-~~la~~~~~~-~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHA-AVVAEIVGKS-GKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHH-HHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 345556666777789999999999999999 5655554332 49999999999999999987 345799999998764
Q ss_pred cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..+. +.||+|++....++++ ..+.+.|||||++++..
T Consensus 140 ~~~~---~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEEN---APYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcC---CCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 3332 7899999988766543 35677899999988854
No 67
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.38 E-value=6.9e-12 Score=116.41 Aligned_cols=116 Identities=15% Similarity=0.200 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---------------CCCC
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------------TNPK 84 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------------~~~~ 84 (433)
..+.+++..+...++.+|||+|||.|..+ ..++. .| .+|+|+|+|+.+++.+.+.. ...+
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da-~~LA~---~G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDL-AWLAE---QG-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGN 95 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHH-HHHHh---CC-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCc
Confidence 44555555554456789999999999999 55552 33 79999999999999864422 1246
Q ss_pred eEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646 85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 85 i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
+++.++|+.+.+.. ..+.||.|+-..+++|++ .....++.+.++|||||++++...
T Consensus 96 v~~~~~D~~~~~~~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 96 IEIFCGDFFALTAA--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred eEEEEccCCCCCcc--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 88999999775321 126799999999888884 356789999999999998776644
No 68
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.37 E-value=3.6e-12 Score=114.02 Aligned_cols=106 Identities=17% Similarity=0.359 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF 111 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~ 111 (433)
+|+.||||+|||.|.+. ..|... ++ .+.+|+|++++.+..+.++ ++.++++|+++. +..+.+++||.|+++
T Consensus 12 ~pgsrVLDLGCGdG~LL-~~L~~~--k~-v~g~GvEid~~~v~~cv~r----Gv~Viq~Dld~g-L~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELL-AYLKDE--KQ-VDGYGVEIDPDNVAACVAR----GVSVIQGDLDEG-LADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHH-HHHHHh--cC-CeEEEEecCHHHHHHHHHc----CCCEEECCHHHh-HhhCCCCCccEEehH
Confidence 68999999999999998 565543 22 5899999999999999886 788999999875 677778999999999
Q ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhh
Q psy11646 112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYD 149 (433)
Q Consensus 112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~ 149 (433)
.++.++.+++.+++++.|+ |...++++++...+..
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~ 117 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRN 117 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHH
Confidence 9999999999999888655 6678888877654433
No 69
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.37 E-value=2.9e-12 Score=117.51 Aligned_cols=109 Identities=16% Similarity=0.290 Sum_probs=83.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
...+|||||||+|.++. .++...|.. .++|+|+++.+++.|+++. ...+++++++|+..........+++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~-~la~~~p~~--~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLI-DMAKQNPDK--NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHH-HHHHhCCCC--CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 45689999999999994 444555554 8999999999999998876 33589999999976421112236899999
Q ss_pred EcccccchhhH--------HHHHHHHHHhccCCCEEEEEeccC
Q psy11646 110 SFYCLHWVQDQ--------RQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 110 s~~~l~~~~d~--------~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
++....|.... ..+++++.++|||||.+++.....
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 98876665321 568999999999999998876443
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.37 E-value=1.3e-11 Score=112.40 Aligned_cols=111 Identities=17% Similarity=0.304 Sum_probs=83.6
Q ss_pred HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccc
Q psy11646 25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIF 101 (433)
Q Consensus 25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~ 101 (433)
++..+...++.+|||+|||+|.++..+ ++..+. .+++++|+|+.+++.|+++. ...++++..+|+.. .++
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~~~~l-a~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~--- 95 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSVSIEA-ALQFPS--LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELP--- 95 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHHHHHH-HHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcC---
Confidence 345555567889999999999999444 444444 49999999999999999876 23568888888642 222
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
++||+|++....++ ....++.+.+.|+|||.+++.......
T Consensus 96 -~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~~~ 136 (187)
T PRK08287 96 -GKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILLEN 136 (187)
T ss_pred -cCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecHhh
Confidence 67999999876554 456788999999999999886544333
No 71
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.36 E-value=1.1e-11 Score=112.22 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
.++.+|||+|||+|.++..+.. . + .+++++|+|+.|++.|+++. ...++++..+|+... . .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~-~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~----~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKG-K---G-KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG-V----RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHh-c---C-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc-c----CCcccEEE
Confidence 4567899999999999854443 2 2 38999999999999999987 234677888887553 1 26899999
Q ss_pred Ecccccchhh---------------------HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhc
Q psy11646 110 SFYCLHWVQD---------------------QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSR 156 (433)
Q Consensus 110 s~~~l~~~~d---------------------~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~ 156 (433)
++.++++..+ ....++++.++|+|||.+++.........+....+..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence 9988875532 3567999999999999999887655544444444443
No 72
>KOG3674|consensus
Probab=99.36 E-value=9.5e-14 Score=136.69 Aligned_cols=150 Identities=21% Similarity=0.335 Sum_probs=124.5
Q ss_pred CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC--HHHHHHHHhcccceeEEecCCCC
Q psy11646 200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN--VVCLETKFQIFFENVSIAKPKSS 277 (433)
Q Consensus 200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~--~~~~~~~l~~~F~~v~~~KP~~s 277 (433)
..+|+|..||+-++.|...-+|.+-..|..+-+..|..+|+.||.||.|+|+-.+ ...+++.+...|+.|+++||.+|
T Consensus 225 gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatS 304 (696)
T KOG3674|consen 225 GTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATS 304 (696)
T ss_pred ceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccC
Confidence 4699999999999999999999999999999999999999999999999999877 57899999999999999999999
Q ss_pred cccccceeEEEeeccCCCCCCCCccCccccccCccccccccccccCCccCCCcccceeeecCCCCCC------------C
Q psy11646 278 RNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKDVARFISPYHHSKHPISE------------M 345 (433)
Q Consensus 278 r~~s~E~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 345 (433)
|.+++|+||||.+||..+...| |...+--+ -+.+..+.|.+|.=.++-| +
T Consensus 305 k~GnSEvYVvCl~yK~~~~l~~-Ll~~m~~~-----------------~~nd~~~~~LF~~~~IP~dFLmqhe~cc~ff~ 366 (696)
T KOG3674|consen 305 KPGNSEVYVVCLGYKDHPDLPR-LLGSMNMD-----------------ISNDTLVMPLFAKFQIPHDFLMQHEQCCEFFV 366 (696)
T ss_pred CCCCceEEEEecccCCCccchh-hhhhhhcc-----------------cccchhhccccccccCchHHHHHHHHHHHHHH
Confidence 9999999999999988764333 22222111 1244566777777666444 6
Q ss_pred ccccccCCceeEeeeeeccccc
Q psy11646 346 TALLQSVGFNIHHCDSNTSSYS 367 (433)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~ 367 (433)
.|++|....+++.++...+.|-
T Consensus 367 k~Q~d~Ie~~i~~fe~~~r~yl 388 (696)
T KOG3674|consen 367 KKQIDRIELHIKTFEEHHRMYL 388 (696)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 7888888888888888877775
No 73
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.35 E-value=1.1e-11 Score=115.64 Aligned_cols=111 Identities=14% Similarity=0.253 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN 96 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~ 96 (433)
.....+++.+..+++.+|||||||+|..+ ..+++..+.. .+|+++|+++.+++.|++++ +..++++..+|.....
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a-~~la~~~~~~-g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQA-AVLAEIVGRD-GLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHH-HHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence 34455666666788999999999999999 5555554432 37999999999999999987 3467999999987542
Q ss_pred ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.. .++||+|++.....++ ...+.+.|+|||++++..
T Consensus 142 ~~---~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EP---LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cc---cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 22 2689999998776554 345788999999988864
No 74
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=1.2e-11 Score=123.55 Aligned_cols=115 Identities=21% Similarity=0.329 Sum_probs=86.4
Q ss_pred HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C----CCCeEEEEecccCCccc
Q psy11646 25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T----NPKLEFVVANIADQNLE 98 (433)
Q Consensus 25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~----~~~i~~~~~Di~~~~l~ 98 (433)
+++.++...+.+|||+|||+|.++ ..+++..|.. +++++|+|+.|++.|++++ . ..++++...|..+. .+
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~-i~la~~~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIG-LTLLDKNPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHH-HHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 444554445679999999999999 4555555554 9999999999999999886 1 13678888886543 22
Q ss_pred ccccCcEeEEEEcccccchh-----hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 99 SIFLAKFNKIFSFYCLHWVQ-----DQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~~-----d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
.++||+|+|+.++|... ...+++++++++|+|||.++++.....+
T Consensus 296 ---~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~ 345 (378)
T PRK15001 296 ---PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLD 345 (378)
T ss_pred ---CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcC
Confidence 26899999999987542 2457899999999999999998644333
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=1.4e-11 Score=122.20 Aligned_cols=117 Identities=27% Similarity=0.382 Sum_probs=86.6
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCc
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAK 104 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~ 104 (433)
+.+......+|||+|||+|.++ ..+++..+.. +++++|+|+.|++.|++++ .....++...|+... . .++
T Consensus 190 ~~l~~~~~g~VLDlGCG~G~ls-~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~----~~~ 261 (342)
T PRK09489 190 STLTPHTKGKVLDVGCGAGVLS-AVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-I----KGR 261 (342)
T ss_pred HhccccCCCeEEEeccCcCHHH-HHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-c----CCC
Confidence 3333344568999999999999 4555555543 8999999999999999887 222345666676432 2 378
Q ss_pred EeEEEEcccccch-----hhHHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646 105 FNKIFSFYCLHWV-----QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY 151 (433)
Q Consensus 105 fD~Vis~~~l~~~-----~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~ 151 (433)
||+|+++.++|+. ...+.+++++.+.|+|||.++++....-|.....
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l 313 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLL 313 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHH
Confidence 9999999999863 3457889999999999999999876655544433
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.32 E-value=3.6e-11 Score=110.56 Aligned_cols=122 Identities=18% Similarity=0.325 Sum_probs=88.6
Q ss_pred HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccc
Q psy11646 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIF 101 (433)
Q Consensus 26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~ 101 (433)
+..+...++.+|||+|||+|.++..++....+. .+++++|+++.+++.|+++. + ..++.+..+|..+. ++ ..
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~--~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l~-~~ 108 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGET--GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-LF-TI 108 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-Hh-hc
Confidence 456677889999999999999985544332233 48999999999999999886 3 35788888887653 12 12
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~ 154 (433)
.+.||.|++... ..+...+++.+.++|+|||++++..............+
T Consensus 109 ~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 158 (198)
T PRK00377 109 NEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSAL 158 (198)
T ss_pred CCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHH
Confidence 368999999653 34567889999999999999987554444333333333
No 77
>PRK14967 putative methyltransferase; Provisional
Probab=99.32 E-value=3.9e-11 Score=112.43 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL 97 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l 97 (433)
.++...+......++.+|||+|||+|.++.. ++.. +..+++++|+++.+++.|+++. ...++.+...|+... +
T Consensus 23 ~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~-la~~---~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~ 97 (223)
T PRK14967 23 QLLADALAAEGLGPGRRVLDLCTGSGALAVA-AAAA---GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-V 97 (223)
T ss_pred HHHHHHHHhcccCCCCeEEEecCCHHHHHHH-HHHc---CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-c
Confidence 3444555555567788999999999999844 4432 2248999999999999999876 223577888887653 2
Q ss_pred cccccCcEeEEEEcccccchh---------------------hHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQ---------------------DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~---------------------d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~ 154 (433)
+ .++||+|+++..++... ....+++++.++|||||.+++..............+
T Consensus 98 ~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l 172 (223)
T PRK14967 98 E---FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRL 172 (223)
T ss_pred c---CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHH
Confidence 3 37899999986544321 135678889999999999998655443333444433
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=1.5e-11 Score=128.14 Aligned_cols=113 Identities=21% Similarity=0.361 Sum_probs=88.0
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccccccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
.+++.+...++.+|||||||+|.++. .+++. +.+++|+|+|+.|++.+++.. ...++++.++|+....++ ...
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~-~la~~----~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~ 101 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTG-ELAKK----AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISD 101 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHH-HHHhh----CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCC
Confidence 34444544567899999999999994 44432 248999999999999887654 346789999998643221 223
Q ss_pred CcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646 103 AKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
++||+|++..+++|+++ ...+++++.++|||||.+++.+.
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 78999999999999976 57899999999999999988753
No 79
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.31 E-value=2.7e-11 Score=115.37 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHH--hhc-CCC-CeEEEEecccCCcccccccCcEeEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK--NHH-TNP-KLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~--~~~-~~~-~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
.|.+|||||||.|.++..++. .+...|+|+|.++......+ +++ +.. .+.+.-.-+++.+. .+.||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~----~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLG----RGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----LGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhh----cCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----cCCcCEE
Confidence 588999999999999977765 34358999999987765532 222 322 23333345565443 3789999
Q ss_pred EEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
+|.++|+|..++-..+.++++.|+|||.+++-+.
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 9999999999999999999999999999998654
No 80
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.29 E-value=9.3e-11 Score=109.53 Aligned_cols=105 Identities=21% Similarity=0.336 Sum_probs=80.6
Q ss_pred HHHHHhcC--CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C--CCCeEEEEecccCCc
Q psy11646 23 SQYIDQFK--WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T--NPKLEFVVANIADQN 96 (433)
Q Consensus 23 ~~l~~~l~--~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~--~~~i~~~~~Di~~~~ 96 (433)
..+++.+. ..++.+|||+|||+|.++..+ +.. + .+++|+|+|+.|++.|+++. . ..++.+.+.|+...+
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l-a~~---~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIEL-AKR---G-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHH-HHC---C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 33444443 356889999999999999444 432 2 48999999999999999987 1 147899999987643
Q ss_pred ccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEE
Q psy11646 97 LESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVL 138 (433)
Q Consensus 97 l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~ll 138 (433)
++||+|++..+++|.+ +...+++++.+++++++.+.
T Consensus 118 ------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 118 ------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred ------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 6899999999988764 46788999999998765544
No 81
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.29 E-value=4.4e-11 Score=111.44 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---------------CC
Q psy11646 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------------TN 82 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------------~~ 82 (433)
....|.++...+...++.+|||+|||.|..+ ..|+. .| .+|+|+|+|+.+++.+.+.. ..
T Consensus 22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da-~~LA~---~G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~ 96 (218)
T PRK13255 22 VNPLLQKYWPALALPAGSRVLVPLCGKSLDM-LWLAE---QG-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQA 96 (218)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCChHhH-HHHHh---CC-CeEEEEccCHHHHHHHHHHcCCCcccccccccccccc
Confidence 3455556666555567789999999999999 55553 33 79999999999999874321 13
Q ss_pred CCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.++++.++|+.+.... ..+.||.|+...++++++ .....++.+.++|+|||++++..
T Consensus 97 ~~v~~~~~D~~~l~~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 97 GEITIYCGDFFALTAA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CceEEEECcccCCCcc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 5688999999875322 225899999999988885 45788999999999999755543
No 82
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.29 E-value=3.6e-11 Score=118.08 Aligned_cols=112 Identities=15% Similarity=0.323 Sum_probs=88.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcc
Q psy11646 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNL 97 (433)
Q Consensus 22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l 97 (433)
...+++.+...++.+|||||||+|.++..+ ++..|.. +++++|. +.+++.++++. ...+++++.+|+.+.++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~-~~~~p~~--~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAM-LKHFPEL--DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHH-HHHCCCC--EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence 444566666678889999999999999444 4455654 8999997 78999998876 23579999999876443
Q ss_pred cccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
+ .+|+|++..++|+..+ ...+++++++.|+|||++++.+.
T Consensus 214 ~-----~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 214 P-----EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred C-----CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 3 3699999999997754 35789999999999999999864
No 83
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.27 E-value=4.4e-11 Score=119.16 Aligned_cols=115 Identities=17% Similarity=0.319 Sum_probs=89.3
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI 100 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~ 100 (433)
.+++.+....+..+||||||+|.++ ..++...|.. .++|+|+++.+++.|.++. +..++.++++|+.... ...
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~l-l~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-~~~ 188 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHL-LYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-ELL 188 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHH-HHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh-hhC
Confidence 3455554455779999999999999 4555555654 8999999999999998887 4468999999986531 223
Q ss_pred ccCcEeEEEEcccccchhhH------HHHHHHHHHhccCCCEEEEEec
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQ------RQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~------~~~l~~i~~~LkpGG~lll~~~ 142 (433)
.++++|.|+++....|.... ...+.+++++|+|||.+.+.+-
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 34899999998887775432 5789999999999999998753
No 84
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.26 E-value=2e-10 Score=102.20 Aligned_cols=126 Identities=14% Similarity=0.260 Sum_probs=101.9
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI 100 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~ 100 (433)
-.+..+.+.++.+++|||||+|+.+..++ ...|.+ +++++|-++++++..+++. +.++++++.+++-+. +++
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~--~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~-L~~- 99 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSG--RVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA-LPD- 99 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCc--eEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh-hcC-
Confidence 35677888999999999999999997776 556665 9999999999999988877 678999999997654 332
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCC
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPK 159 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~ 159 (433)
. .++|.|+.... .+.+..++.+...|||||++++..............+...+.
T Consensus 100 ~-~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 100 L-PSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred C-CCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 1 27999999988 346788999999999999999988777777666666655443
No 85
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.25 E-value=1.4e-10 Score=113.54 Aligned_cols=96 Identities=18% Similarity=0.314 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------CCCeEEEEecccCCcccccccCc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------NPKLEFVVANIADQNLESIFLAK 104 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------~~~i~~~~~Di~~~~l~~~~~~~ 104 (433)
++.+|||+|||+|.++..++. .+ .+|+|+|+|+.|++.|+++.. ..++.|...|+... +++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~----~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~~ 212 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL----EG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SGK 212 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH----CC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CCC
Confidence 578999999999999844443 23 589999999999999999862 23577888887542 278
Q ss_pred EeEEEEcccccchhhH--HHHHHHHHHhccCCCEEEEEe
Q psy11646 105 FNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 105 fD~Vis~~~l~~~~d~--~~~l~~i~~~LkpGG~lll~~ 141 (433)
||+|++..+++|.++. ...++.+.+ +.+||. ++..
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~ 249 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF 249 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence 9999999999888653 345666664 455554 4444
No 86
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.25 E-value=2.8e-11 Score=101.19 Aligned_cols=104 Identities=23% Similarity=0.371 Sum_probs=80.1
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
|.+|||+|||+|.++..+++ .. . .+++|+|+++..++.|+.++ ...++++.++|+.+.. +....++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~-~~-~--~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALR-RG-A--ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP-EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHH-HC-T--CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH-HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHH-HC-C--CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch-hhccCceeEEEE
Confidence 56899999999999955544 33 2 59999999999999999998 2367999999997653 223458999999
Q ss_pred Ecccccchh--------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646 110 SFYCLHWVQ--------DQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 110 s~~~l~~~~--------d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
++..+.... ....+++.+.++|+|||.+++..+
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 998886431 235779999999999999988653
No 87
>KOG3010|consensus
Probab=99.25 E-value=1.7e-11 Score=112.15 Aligned_cols=124 Identities=21% Similarity=0.291 Sum_probs=85.1
Q ss_pred chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCC-CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC
Q psy11646 3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDN-ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT 81 (433)
Q Consensus 3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~ 81 (433)
+++.|...++..... .+..+... .++ ..++|+|||+|..+ ..++.. +.+|+|+|+|+.|++.|++...
T Consensus 8 ~a~~Y~~ARP~YPtd---w~~~ia~~---~~~h~~a~DvG~G~Gqa~-~~iae~----~k~VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010|consen 8 QAADYLNARPSYPTD---WFKKIASR---TEGHRLAWDVGTGNGQAA-RGIAEH----YKEVIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred cHHHHhhcCCCCcHH---HHHHHHhh---CCCcceEEEeccCCCcch-HHHHHh----hhhheeecCCHHHHHHhhcCCC
Confidence 678888888777633 33333332 222 27999999999665 666643 3589999999999999998861
Q ss_pred ----CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCC-EEEEEe
Q psy11646 82 ----NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG-EVLLLL 141 (433)
Q Consensus 82 ----~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG-~lll~~ 141 (433)
.....+...+..+ +. ..+++.|+|++..++||+ |.+.++++++|+||+.| .+.+..
T Consensus 77 ~~y~~t~~~ms~~~~v~--L~-g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 77 VTYCHTPSTMSSDEMVD--LL-GGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred cccccCCcccccccccc--cc-CCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 1112222222222 11 114899999999999999 67889999999999766 555543
No 88
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.25 E-value=1.3e-10 Score=106.75 Aligned_cols=112 Identities=13% Similarity=0.299 Sum_probs=81.5
Q ss_pred HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccc
Q psy11646 25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIF 101 (433)
Q Consensus 25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~ 101 (433)
++..+...++.+|||+|||+|.++..+ +...+. .+++++|+|+.+++.|+++. ...+++++.+|+.+. +.. .
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~l-a~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-~~~-~ 106 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEA-GLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-LAQ-L 106 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHH-HHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-Hhh-C
Confidence 455556678899999999999998444 433343 49999999999999999876 335789998887542 111 1
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
...+|.++... ..+...+++++.++|+|||.+++......
T Consensus 107 ~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 107 APAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred CCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 13456665532 23467889999999999999998865543
No 89
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.23 E-value=1.4e-10 Score=108.41 Aligned_cols=104 Identities=28% Similarity=0.372 Sum_probs=84.2
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--C-CCeEEEEecccCCcccccccCcEeEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--N-PKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--~-~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
.+.+|||+|||+|.++..++. . + .+++++|+++.+++.++++.. . .++++...|+.+.+.. ..++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~-~---~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR-L---G-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK--GAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh-c---C-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC--CCCCccEEE
Confidence 478999999999999844433 2 2 479999999999999998762 2 2588888887664322 136899999
Q ss_pred EcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
+..++++..++..+++++.++|+|||.+++....
T Consensus 118 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 118 CMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred ehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999999999999999999999999999887654
No 90
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.23 E-value=4.6e-11 Score=110.28 Aligned_cols=114 Identities=19% Similarity=0.359 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccC
Q psy11646 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIAD 94 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~ 94 (433)
+-.+...+++.+..+|+.+|||||||+|..+ .+++.+.... ..|+++|+.+..++.|++++ ...++.+.++|...
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~a-Alla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQA-ALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHH-HHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHH-HHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 3355667777888899999999999999999 7777776544 48999999999999999998 45689999999765
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
.... .+.||.|++......++ ..+.+.|++||++++..-
T Consensus 135 g~~~---~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPE---EAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGG---G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred cccc---CCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 4222 27899999998876543 246788999999998653
No 91
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.22 E-value=6.2e-11 Score=108.61 Aligned_cols=100 Identities=15% Similarity=0.304 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF 111 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~ 111 (433)
+++.+|||+|||+|.++ ..++... ...++|+|+|+.+++.|+++ ++++.++|+.+. ++...+++||+|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~-~~l~~~~---~~~~~giD~s~~~i~~a~~~----~~~~~~~d~~~~-l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELL-ALLRDEK---QVRGYGIEIDQDGVLACVAR----GVNVIQGDLDEG-LEAFPDKSFDYVILS 82 (194)
T ss_pred CCCCEEEEeCCCCCHHH-HHHHhcc---CCcEEEEeCCHHHHHHHHHc----CCeEEEEEhhhc-ccccCCCCcCEEEEh
Confidence 46789999999999998 4444322 24789999999999998764 578888998652 211233789999999
Q ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
.++||++++..+++++.+.++ .+++..+.
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~ 111 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGR---HAIVSFPN 111 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCC---eEEEEcCC
Confidence 999999999999998877655 44555443
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.21 E-value=1.6e-10 Score=107.44 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc
Q psy11646 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL 97 (433)
Q Consensus 21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l 97 (433)
....++..+...++.+|||+|||+|..+ ..++... .+++++|+++.+++.|++++ ...++++..+|.... +
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t-~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~ 139 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQA-AVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG-W 139 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHH-HHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC-C
Confidence 3345556666678999999999999998 4555432 38999999999999999887 335688999987543 2
Q ss_pred cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
+ ..++||+|++...++++ ...+.+.|+|||.+++...
T Consensus 140 ~--~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 P--AYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C--cCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 2 12689999998877655 3457889999999988654
No 93
>KOG1541|consensus
Probab=99.21 E-value=1e-10 Score=105.54 Aligned_cols=128 Identities=21% Similarity=0.419 Sum_probs=89.9
Q ss_pred chhhhhhhhhh---cHHHHHHHHHHHHHhcCCCC--CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHH
Q psy11646 3 KATLYETNNSM---QQLDAAKLLSQYIDQFKWTD--NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77 (433)
Q Consensus 3 ~a~~Y~~~~~~---~~~~~~~ll~~l~~~l~~~~--~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~ 77 (433)
.|..|.+...+ |...+.+.| +.+.++. +.-|||||||+|-.+ ..+. ..++.++|+|||+.|++.|.
T Consensus 19 eA~kYt~nsri~~IQ~em~eRaL----ELLalp~~~~~~iLDIGCGsGLSg-~vL~----~~Gh~wiGvDiSpsML~~a~ 89 (270)
T KOG1541|consen 19 EAPKYTQNSRIVLIQAEMAERAL----ELLALPGPKSGLILDIGCGSGLSG-SVLS----DSGHQWIGVDISPSMLEQAV 89 (270)
T ss_pred hhhhccccceeeeehHHHHHHHH----HHhhCCCCCCcEEEEeccCCCcch-heec----cCCceEEeecCCHHHHHHHH
Confidence 35566665443 444444444 4444443 567999999999998 5554 23379999999999999999
Q ss_pred hhcCCCCeEEEEecccC-CcccccccCcEeEEEEcccccchh-------h----HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 78 NHHTNPKLEFVVANIAD-QNLESIFLAKFNKIFSFYCLHWVQ-------D----QRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 78 ~~~~~~~i~~~~~Di~~-~~l~~~~~~~fD~Vis~~~l~~~~-------d----~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
++-. .-.++.+|+-+ .|+ ..++||-+|+..++.|+- + ...++..++.+|++|++.++.+...
T Consensus 90 ~~e~--egdlil~DMG~Glpf---rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 90 EREL--EGDLILCDMGEGLPF---RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred Hhhh--hcCeeeeecCCCCCC---CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 7531 13466777653 333 449999999998888772 2 2356888999999999999987543
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.21 E-value=1.1e-10 Score=113.23 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHh-cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEE
Q psy11646 15 QLDAAKLLSQYIDQ-FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVV 89 (433)
Q Consensus 15 ~~~~~~ll~~l~~~-l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~ 89 (433)
++....++...+.. +...++.+|||+|||+|.++ ..++...+. .+++|+|+|+.+++.|++++ + ..++++.+
T Consensus 102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~-~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~ 178 (284)
T TIGR03533 102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIA-IACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQ 178 (284)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHH-HHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 33455566655543 32245679999999999999 445544444 49999999999999999987 2 24689999
Q ss_pred ecccCCcccccccCcEeEEEEcccccch-------------------------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 90 ANIADQNLESIFLAKFNKIFSFYCLHWV-------------------------QDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~-------------------------~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|+.+. ++ .++||+|+++...... ......++++.+.|+|||.+++..
T Consensus 179 ~D~~~~-~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 179 SDLFAA-LP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred Cchhhc-cC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998543 33 2589999998543110 112566889999999999988754
No 95
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.21 E-value=1.4e-10 Score=110.35 Aligned_cols=118 Identities=25% Similarity=0.366 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecc
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANI 92 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di 92 (433)
+....++..++..+. ..+.+|||+|||+|..+. .++...+. .+++|+|+++.+++.|+++. ...++++..+|+
T Consensus 71 ~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~-~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 71 PDTEELVEAALERLK-KGPLRVLDLGTGSGAIAL-ALAKERPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW 146 (251)
T ss_pred CChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHH-HHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence 345566666666654 345699999999999994 44444444 48999999999999999887 334689999998
Q ss_pred cCCcccccccCcEeEEEEcccccchh--------------------------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 93 ADQNLESIFLAKFNKIFSFYCLHWVQ--------------------------DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 93 ~~~~l~~~~~~~fD~Vis~~~l~~~~--------------------------d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.+. ++ .++||+|+++.++.... ....+++++.++|+|||.+++..
T Consensus 147 ~~~-~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 147 FEP-LP---GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hcc-Cc---CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 653 33 37899999977654321 12356889999999999988753
No 96
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.20 E-value=2e-10 Score=112.50 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C--CCCeEEEEecccCC-cccccc-cCcE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T--NPKLEFVVANIADQ-NLESIF-LAKF 105 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~--~~~i~~~~~Di~~~-~l~~~~-~~~f 105 (433)
.++.+|||+|||+|..+..++. .++.+ .+|+++|+|++|++.|++++ . ..++.++++|+.+. ++.... .+..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~-~l~~~-~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLD-ALRQP-ARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHH-hhccC-CeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCe
Confidence 4668999999999999955554 33322 58999999999999998876 1 23466789998763 233211 1123
Q ss_pred eEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 106 NKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 106 D~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
.++++..++++++ +...+++++++.|+|||.+++......
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 3455455677664 466789999999999999998654443
No 97
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.19 E-value=2.2e-10 Score=109.19 Aligned_cols=125 Identities=17% Similarity=0.242 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecc
Q psy11646 14 QQLDAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI 92 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di 92 (433)
.++.++.+++.++..+.. .++.+|||+|||+|.++..+ +...+. .+++|+|+|+.+++.|++++...++++.++|+
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~l-a~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~ 142 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAAL-AAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDL 142 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHH-HHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeec
Confidence 345666777766665432 23468999999999999444 433333 48999999999999999987333468888998
Q ss_pred cCCcccccccCcEeEEEEcccccchh--------------------------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646 93 ADQNLESIFLAKFNKIFSFYCLHWVQ--------------------------DQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 93 ~~~~l~~~~~~~fD~Vis~~~l~~~~--------------------------d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
.+. ++....++||+|+++....... -....+..+.++|+|||.+++...
T Consensus 143 ~~~-l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 143 YDA-LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhh-cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 653 2221236799999987653110 124677788899999999987653
No 98
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.19 E-value=5.4e-10 Score=104.87 Aligned_cols=94 Identities=22% Similarity=0.397 Sum_probs=72.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---C-CCeEEEEecccCCcccccccCcEe
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---N-PKLEFVVANIADQNLESIFLAKFN 106 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~-~~i~~~~~Di~~~~l~~~~~~~fD 106 (433)
..++.+|||||||+|.++..++. . + .+|+|+|+|+.|++.|+++.. . .++++..+|+.. . .++||
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~-~---~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~---~~~fD 129 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLAR-R---G-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L---LGRFD 129 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHH-c---C-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c---cCCcC
Confidence 35678999999999999854443 2 2 479999999999999999871 1 478899888543 1 27899
Q ss_pred EEEEcccccchh--hHHHHHHHHHHhccCCC
Q psy11646 107 KIFSFYCLHWVQ--DQRQAISNIYNLLMPGG 135 (433)
Q Consensus 107 ~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG 135 (433)
+|++..+++|.+ +...+++++.+.+++++
T Consensus 130 ~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 130 TVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred EEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 999999998764 45678888888765443
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=4.1e-10 Score=109.60 Aligned_cols=109 Identities=20% Similarity=0.335 Sum_probs=77.8
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.++.+|||+|||+|.++.. ++.. + ..+++|+|+++.+++.|+++.. ..++.+...+... . ..++||+
T Consensus 158 ~~g~~VLDvGcGsG~lai~-aa~~-g--~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~---~~~~fDl 228 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIA-ALKL-G--AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P---IEGKADV 228 (288)
T ss_pred CCCCEEEEeCCChhHHHHH-HHHc-C--CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c---cCCCceE
Confidence 4688999999999999844 3332 2 2489999999999999999872 1234445444221 1 2378999
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE 152 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~ 152 (433)
|+++...+. ...++.++.++|||||.++++.........+..
T Consensus 229 Vvan~~~~~---l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~ 270 (288)
T TIGR00406 229 IVANILAEV---IKELYPQFSRLVKPGGWLILSGILETQAQSVCD 270 (288)
T ss_pred EEEecCHHH---HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence 999876443 457889999999999999998765444333333
No 100
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=2.1e-10 Score=110.78 Aligned_cols=118 Identities=23% Similarity=0.339 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecc
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANI 92 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di 92 (433)
+..+.+++.+.......++.+|||+|||+|..+. .++...+. .+++|+|+|+.+++.|+++. ...++.+..+|+
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~-~la~~~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIAL-ALAKERPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHH-HHHHHCCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 3445566666655555678899999999999984 44444444 49999999999999999986 235789999998
Q ss_pred cCCcccccccCcEeEEEEcccccch--------------------------hhHHHHHHHHHHhccCCCEEEEE
Q psy11646 93 ADQNLESIFLAKFNKIFSFYCLHWV--------------------------QDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 93 ~~~~l~~~~~~~fD~Vis~~~l~~~--------------------------~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
... +. .++||+|+++..+... .....+++++.++|+|||.+++.
T Consensus 168 ~~~-~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 168 FEP-LP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCc-CC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 543 22 3789999997654211 12356788888999999998874
No 101
>KOG1271|consensus
Probab=99.18 E-value=3.3e-10 Score=99.35 Aligned_cols=103 Identities=23% Similarity=0.370 Sum_probs=79.1
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEEEecccCCcccccccCcEeEEE
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
..+|||+|||.|.++..++..-++ ..++|+|.|+.+++.|+..+ .. ..|+|.++||.+.. +..++||+|+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~---~~~~qfdlvl 141 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD---FLSGQFDLVL 141 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc---ccccceeEEe
Confidence 349999999999999776664443 25999999999999998877 22 34999999998753 3348999999
Q ss_pred Ecccccchh--------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646 110 SFYCLHWVQ--------DQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 110 s~~~l~~~~--------d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
--..+..+. .+...+..+.++|+|||+++++..
T Consensus 142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 877665441 123457888999999999998753
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=108.62 Aligned_cols=106 Identities=23% Similarity=0.380 Sum_probs=85.6
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
....+|||+|||+|..+ .+++...+. .+++|+|+++.+.+.|+++. ...++++++.|+.... ......+||+
T Consensus 43 ~~~~~IlDlGaG~G~l~-L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~-~~~~~~~fD~ 118 (248)
T COG4123 43 PKKGRILDLGAGNGALG-LLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL-KALVFASFDL 118 (248)
T ss_pred ccCCeEEEecCCcCHHH-HHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh-hcccccccCE
Confidence 45789999999999999 666666555 49999999999999999988 4578999999998753 2233357999
Q ss_pred EEEcccccchh------------------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 108 IFSFYCLHWVQ------------------DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 108 Vis~~~l~~~~------------------d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+|+..++-.. +.+..++...++|||||.+.++.
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 99998765321 35678899999999999998874
No 103
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.3e-10 Score=104.02 Aligned_cols=108 Identities=15% Similarity=0.315 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN 96 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~ 96 (433)
.....+++.+..+++.+|||||||+|..+ .++++... +|+.+|+.++..+.|++++ +..++.+.++|-....
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~a-Avla~l~~----~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQA-AVLARLVG----RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHH-HHHHHHhC----eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 44556777778899999999999999999 77775532 8999999999999999988 5567999999987653
Q ss_pred ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.+. ..||.|+...+...++. .+.+.|||||++++-.
T Consensus 134 ~~~---aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 134 PEE---APYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCC---CCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEE
Confidence 333 78999999988776653 3568999999999865
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.17 E-value=2.4e-10 Score=114.67 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEec
Q psy11646 14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVAN 91 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~D 91 (433)
-|+.++.+++.++..+ .++.+|||+|||+|..+. .++...+. .+++|+|+|+.|++.|+++. ...++++.++|
T Consensus 234 PRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~Iai-aLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gD 308 (423)
T PRK14966 234 PRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAV-TVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGS 308 (423)
T ss_pred CCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHH-HHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 4566777887777665 356699999999999984 44433343 48999999999999999987 33478999999
Q ss_pred ccCCcccccccCcEeEEEEcccccchh-------------------------hHHHHHHHHHHhccCCCEEEEE
Q psy11646 92 IADQNLESIFLAKFNKIFSFYCLHWVQ-------------------------DQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 92 i~~~~l~~~~~~~fD~Vis~~~l~~~~-------------------------d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+.+...+ ..++||+|+|+....... -....++.+.+.|+|||.+++.
T Consensus 309 l~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 309 WFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred hhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8653222 125799999988642110 1235677778899999998764
No 105
>KOG3673|consensus
Probab=99.17 E-value=6.7e-11 Score=118.07 Aligned_cols=114 Identities=28% Similarity=0.483 Sum_probs=103.6
Q ss_pred EccccccchHHHHHHhc----CCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC--
Q psy11646 181 QGDITKESTIKEIFSHF----DDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN-- 254 (433)
Q Consensus 181 qgDi~~~~t~~~il~~~----~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~-- 254 (433)
.|||+++.....+..+. .+.++.+.+.||.-.+-|..++++.++-+|.+..+-+|..++++||+|+||+|.-..
T Consensus 328 dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPF 407 (845)
T KOG3673|consen 328 DGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPF 407 (845)
T ss_pred CCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcc
Confidence 46888888777776654 457899999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHhcccceeEEecCCCCcccccceeEEEeeccCC
Q psy11646 255 VVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP 294 (433)
Q Consensus 255 ~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~ 294 (433)
..-|++.|..+|+.|.+.||-+||+.++|.|+||.+.+..
T Consensus 408 SVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~ 447 (845)
T KOG3673|consen 408 SVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKE 447 (845)
T ss_pred hhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhh
Confidence 5678899999999999999999999999999999998754
No 106
>PRK14968 putative methyltransferase; Provisional
Probab=99.16 E-value=6.4e-10 Score=100.83 Aligned_cols=104 Identities=25% Similarity=0.392 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCC--eEEEEecccCCcccccccCcEe
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPK--LEFVVANIADQNLESIFLAKFN 106 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~--i~~~~~Di~~~~l~~~~~~~fD 106 (433)
.++.+|||+|||+|..+..++. . + .+++|+|+|+.+++.++++. ...+ +.+.+.|+.+. +.+ .+||
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~-~---~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~---~~~d 92 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAK-N---G-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRG---DKFD 92 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHh-h---c-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccc---cCce
Confidence 5678999999999999855443 2 2 59999999999999998876 2122 88888887653 332 5899
Q ss_pred EEEEcccccch---------------------hhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 107 KIFSFYCLHWV---------------------QDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 107 ~Vis~~~l~~~---------------------~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
+|+++..+... .....+++++.++|+|||.+++.....
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 99998765431 124567999999999999988876543
No 107
>PTZ00146 fibrillarin; Provisional
Probab=99.16 E-value=2.6e-10 Score=109.41 Aligned_cols=128 Identities=14% Similarity=0.200 Sum_probs=84.6
Q ss_pred hhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCe
Q psy11646 7 YETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKL 85 (433)
Q Consensus 7 Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i 85 (433)
|...++.+...+..++.- ++.+.++++.+|||+|||+|.++ ..++...... ..|+++|+|+.|++...+.. ...++
T Consensus 107 yR~w~p~rSKlaa~i~~g-~~~l~IkpG~~VLDLGaG~G~~t-~~lAdiVG~~-G~VyAVD~s~r~~~dLl~~ak~r~NI 183 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGG-VANIPIKPGSKVLYLGAASGTTV-SHVSDLVGPE-GVVYAVEFSHRSGRDLTNMAKKRPNI 183 (293)
T ss_pred eeeeCCcccHHHHHHHCC-cceeccCCCCEEEEeCCcCCHHH-HHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhhcCCC
Confidence 444555554433333322 34455688999999999999999 4555554322 38999999987543333332 22688
Q ss_pred EEEEecccCCc-ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 86 EFVVANIADQN-LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 86 ~~~~~Di~~~~-l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
.++..|+.... +. ...++||+|++.... ..+...++.++.++|||||.+++.
T Consensus 184 ~~I~~Da~~p~~y~-~~~~~vDvV~~Dva~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 184 VPIIEDARYPQKYR-MLVPMVDVIFADVAQ--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEECCccChhhhh-cccCCCCEEEEeCCC--cchHHHHHHHHHHhccCCCEEEEE
Confidence 99999986421 11 122579999997752 223445677999999999999985
No 108
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.16 E-value=1.9e-10 Score=113.31 Aligned_cols=124 Identities=27% Similarity=0.430 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----C-----C----CCe
Q psy11646 20 KLLSQYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----T-----N----PKL 85 (433)
Q Consensus 20 ~ll~~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~-----~----~~i 85 (433)
.++..++..+... ++.+|||+|||-|..+..+... +...++|+|++...++.|++++ . . -..
T Consensus 48 ~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~----~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a 123 (331)
T PF03291_consen 48 VLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA----KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA 123 (331)
T ss_dssp HHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT----T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred HHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc----CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence 4455555544322 6889999999999887666653 2359999999999999999998 1 1 134
Q ss_pred EEEEecccCCcccc-ccc--CcEeEEEEcccccch----hhHHHHHHHHHHhccCCCEEEEEeccCCch
Q psy11646 86 EFVVANIADQNLES-IFL--AKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFNPI 147 (433)
Q Consensus 86 ~~~~~Di~~~~l~~-~~~--~~fD~Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~lll~~~~~~p~ 147 (433)
.|+.+|.....+.+ ... .+||+|-|..++|+. +..+.+++++.+.|+|||+++.+++....+
T Consensus 124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred heeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 56777765543333 222 489999999999987 235668999999999999999988766554
No 109
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5e-10 Score=106.93 Aligned_cols=121 Identities=25% Similarity=0.362 Sum_probs=91.2
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---CCCeEEEEecccCCccccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---NPKLEFVVANIADQNLESI 100 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~~~~Di~~~~l~~~ 100 (433)
.+++.+....+.+|||+|||.|.++ ..+++..|.. +++.+|++..+++.|+++.. ..+..+...|+-+. ..
T Consensus 149 lLl~~l~~~~~~~vlDlGCG~Gvlg-~~la~~~p~~--~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-v~-- 222 (300)
T COG2813 149 LLLETLPPDLGGKVLDLGCGYGVLG-LVLAKKSPQA--KLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-VE-- 222 (300)
T ss_pred HHHHhCCccCCCcEEEeCCCccHHH-HHHHHhCCCC--eEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-cc--
Confidence 4566666666679999999999999 5666666654 99999999999999999982 23334566665432 22
Q ss_pred ccCcEeEEEEcccccchhh-----HHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646 101 FLAKFNKIFSFYCLHWVQD-----QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE 152 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d-----~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~ 152 (433)
++||+|+||..+|.=.+ -.+.+....+.|++||.|.++..+.-+....+.
T Consensus 223 --~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~ 277 (300)
T COG2813 223 --GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLK 277 (300)
T ss_pred --ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHH
Confidence 58999999999995432 236899999999999999998875555444443
No 110
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.16 E-value=4.4e-10 Score=111.53 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=87.8
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESI 100 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~ 100 (433)
.++....++++.+|||+|||+|.++..... .+ .+++|+|+++.|++.|++++ +..++.+.++|+.+.++..
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~----~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~- 246 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGL----MG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS- 246 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHH----hC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc-
Confidence 444455667899999999999998854332 12 58999999999999999887 3345789999998866543
Q ss_pred ccCcEeEEEEcccccc--------h-hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 101 FLAKFNKIFSFYCLHW--------V-QDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~--------~-~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
++||.|+++.++.. . .-...++.++.++|+|||++++..+....
T Consensus 247 --~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 247 --ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred --CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 78999999865421 1 12478899999999999999988765543
No 111
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=3.3e-10 Score=105.39 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh---------------cCC
Q psy11646 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH---------------HTN 82 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~---------------~~~ 82 (433)
....|.+....+...++.+||..|||.|..+ .+|+. .| .+|+|+|+|+.+++.+.+. +..
T Consensus 28 pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~-~~LA~---~G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 102 (226)
T PRK13256 28 PNEFLVKHFSKLNINDSSVCLIPMCGCSIDM-LFFLS---KG-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG 102 (226)
T ss_pred CCHHHHHHHHhcCCCCCCeEEEeCCCChHHH-HHHHh---CC-CcEEEEecCHHHHHHHHHHcCCCcceecccccceecc
Confidence 3455555566665556789999999999998 56653 34 6899999999999998652 123
Q ss_pred CCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEec
Q psy11646 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
.++++.++|+.+.+......+.||.|+-..++++++ ...+..+.+.++|+|||.+++...
T Consensus 103 ~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 103 DDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 578999999988643222236899999999998885 356789999999999999888764
No 112
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.15 E-value=2.4e-10 Score=111.94 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHh-cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEe
Q psy11646 16 LDAAKLLSQYIDQ-FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVA 90 (433)
Q Consensus 16 ~~~~~ll~~l~~~-l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~ 90 (433)
+....++...+.. +...++.+|||+|||+|.++. .++...+. .+++++|+|+.+++.|++++ + ..++++.++
T Consensus 115 ~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai-~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~ 191 (307)
T PRK11805 115 SPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAI-ACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIES 191 (307)
T ss_pred CchHHHHHHHHHHHhccCCCCEEEEEechhhHHHH-HHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 3455555555543 222223689999999999984 44444444 49999999999999999987 2 246999999
Q ss_pred cccCCcccccccCcEeEEEEcccccc-------------h------------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHW-------------V------------QDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~-------------~------------~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+.+. ++. ++||+|+++..... - ......++++.+.|+|||.+++..
T Consensus 192 D~~~~-l~~---~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 192 DLFAA-LPG---RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred chhhh-CCC---CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 97543 332 58999999853311 0 113567899999999999988753
No 113
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.15 E-value=3e-10 Score=110.38 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC-CCeEEE
Q psy11646 14 QQLDAAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN-PKLEFV 88 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~-~~i~~~ 88 (433)
-|+.++.+++..+..+. ..+..+|||+|||+|..+. .++...+. .+++|+|+|+.+++.|+++. .. .++++.
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l-~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~ 170 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIAL-ALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFI 170 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHH-HHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 34556677777665543 2333799999999999984 44544443 48999999999999999987 22 358999
Q ss_pred EecccCCcccccccCcEeEEEEccccc-------------ch------------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 89 VANIADQNLESIFLAKFNKIFSFYCLH-------------WV------------QDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 89 ~~Di~~~~l~~~~~~~fD~Vis~~~l~-------------~~------------~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
++|+.+. ++. .+||+|+++.... |. ......+.++.+.|+|||.+++..
T Consensus 171 ~~d~~~~-~~~---~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 171 QSNLFEP-LAG---QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred ECchhcc-CcC---CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 9998653 332 4899999974321 11 134567889999999999988754
No 114
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.13 E-value=6.4e-10 Score=106.06 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC
Q psy11646 15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94 (433)
Q Consensus 15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~ 94 (433)
++.+...++.+.... .++.+|||+|||+|..+. .+++. .. .+++|+|+|+.+++.|+++....++.- ...+
T Consensus 103 h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i-~~~~~-g~--~~v~giDis~~~l~~A~~n~~~~~~~~-~~~~-- 173 (250)
T PRK00517 103 HPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAI-AAAKL-GA--KKVLAVDIDPQAVEAARENAELNGVEL-NVYL-- 173 (250)
T ss_pred CHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHH-HHHHc-CC--CeEEEEECCHHHHHHHHHHHHHcCCCc-eEEE--
Confidence 334444555444332 578899999999998884 44432 22 369999999999999999872222210 0011
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCch
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI 147 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~ 147 (433)
.. .+.+||+|+++...+ .....+.++.++|||||.+++........
T Consensus 174 ---~~-~~~~fD~Vvani~~~---~~~~l~~~~~~~LkpgG~lilsgi~~~~~ 219 (250)
T PRK00517 174 ---PQ-GDLKADVIVANILAN---PLLELAPDLARLLKPGGRLILSGILEEQA 219 (250)
T ss_pred ---cc-CCCCcCEEEEcCcHH---HHHHHHHHHHHhcCCCcEEEEEECcHhhH
Confidence 11 012799999976533 24567899999999999999986554433
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=4.3e-10 Score=110.44 Aligned_cols=111 Identities=19% Similarity=0.258 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQN 96 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~ 96 (433)
.++..+++.+..+++.+|||||||+|.++ ..+++..+.. .+|+++|+++.+++.|+++. +..++.++++|+....
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a-~~LA~~~~~~-g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNA-AVMSRVVGEK-GLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHH-HHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 34555666666778899999999999999 4555444332 37999999999999999876 3457889999976543
Q ss_pred ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
... ++||+|++...+..++ ..+.+.|+|||.+++..
T Consensus 145 ~~~---~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEF---APYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccc---CCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 222 5799999987665442 24678999999988754
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.12 E-value=8.5e-10 Score=88.31 Aligned_cols=99 Identities=28% Similarity=0.431 Sum_probs=79.7
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
+|+|+|||+|..+..++. .+ ..+++++|+++.++..+++.. ...++.+...|+.+... ...++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~--~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--ccCCceEEEEEcc
Confidence 589999999999854443 22 259999999999999998332 44678899998876532 1237899999999
Q ss_pred cccc-hhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 113 CLHW-VQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 113 ~l~~-~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
++++ .......++.+.+.|+|||.+++.
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9998 778889999999999999999875
No 117
>PRK00811 spermidine synthase; Provisional
Probab=99.11 E-value=1.5e-09 Score=105.38 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=78.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCCCeEEEEecccCCccccccc
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
++.+.+||+||||+|..+..+++ .. +..+|+++|+++.+++.|++.+ ..++++++.+|.... +.. ..
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~-~~--~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-l~~-~~ 148 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLK-HP--SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-VAE-TE 148 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHc-CC--CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-Hhh-CC
Confidence 34577999999999999966654 21 2258999999999999999876 246899999998653 221 23
Q ss_pred CcEeEEEEcccccchhh----HHHHHHHHHHhccCCCEEEEE
Q psy11646 103 AKFNKIFSFYCLHWVQD----QRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d----~~~~l~~i~~~LkpGG~lll~ 140 (433)
++||+|++...-.+... ...+++.+++.|+|||.+++.
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 78999999654332211 256789999999999998764
No 118
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1e-09 Score=101.95 Aligned_cols=123 Identities=16% Similarity=0.320 Sum_probs=100.6
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLES 99 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~ 99 (433)
.++..+...||.+|||.|.|+|.++..++....+.+ +|+..|+-++.++.|++++ + ..++.+...|+.+...+
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G--~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~- 161 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEG--HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE- 161 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCc--eEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-
Confidence 456677789999999999999999944443344445 9999999999999999998 2 24488999998876433
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcC
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRK 157 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~ 157 (433)
..||.|+. .++++..++..+.+.|+|||.+++..++.+.+...+..+...
T Consensus 162 ---~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 162 ---EDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred ---cccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 58999987 567899999999999999999999888888777777777654
No 119
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.10 E-value=5.9e-10 Score=104.06 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=99.1
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
...++||||+|.|..+ .-+++.+ .+|+++|.|+.|....+++ +.+ +.++.+..-. +.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT-~~l~~~f----~~v~aTE~S~~Mr~rL~~k----g~~--vl~~~~w~~~---~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVT-ERLAPLF----KEVYATEASPPMRWRLSKK----GFT--VLDIDDWQQT---DFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHH-HHHHhhc----ceEEeecCCHHHHHHHHhC----CCe--EEehhhhhcc---CCceEEEeehh
Confidence 3568999999999999 5556443 4899999999998888775 333 3344332211 26899999999
Q ss_pred cccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccccccee-eeeccccCceEEEccccccchHH
Q psy11646 113 CLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT-YRCLLFTGVIQVQGDITKESTIK 191 (433)
Q Consensus 113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~-~~m~pl~gv~~iqgDi~~~~t~~ 191 (433)
+|....++...++.+++.|+|+|+++++.. -+|.+|..... ....|.+- -.+.+ -+-++...
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvV---------------lP~~pyVE~~~g~~~~P~e~-l~~~g-~~~E~~v~ 222 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVV---------------LPFRPYVEFGGGKSNRPSEL-LPVKG-ATFEEQVS 222 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEE---------------ecccccEEcCCCCCCCchhh-cCCCC-CcHHHHHH
Confidence 999999999999999999999999999753 22333332211 11111111 11112 11122344
Q ss_pred HHHHhcCCCCCeEEEecCCCC
Q psy11646 192 EIFSHFDDEKVDLVVFDGAPD 212 (433)
Q Consensus 192 ~il~~~~~~~~dlVvsD~ap~ 212 (433)
.+...+.-.+|.++.-.-+|-
T Consensus 223 ~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 223 SLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred HHHHHHHhcCCEEEEEeccCc
Confidence 445677788899987777774
No 120
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.10 E-value=3.4e-11 Score=109.15 Aligned_cols=115 Identities=25% Similarity=0.372 Sum_probs=88.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES 99 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~ 99 (433)
.++.+++......+-.++||+|||||-.+ ..++... .+++|+|||+.|++.|.++-... ...++++... ++.
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G-~~lR~~a----~~ltGvDiS~nMl~kA~eKg~YD--~L~~Aea~~F-l~~ 183 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTG-EALRDMA----DRLTGVDISENMLAKAHEKGLYD--TLYVAEAVLF-LED 183 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCccc-HhHHHHH----hhccCCchhHHHHHHHHhccchH--HHHHHHHHHH-hhh
Confidence 55667777776667789999999999988 5555332 37999999999999999875211 1233443321 221
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
...++||+|++..++.++.+.+.++.-+...|+|||.+.++.-
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 2348999999999999999999999999999999999998753
No 121
>KOG1975|consensus
Probab=99.10 E-value=4.1e-10 Score=106.96 Aligned_cols=126 Identities=20% Similarity=0.359 Sum_probs=93.5
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CC-C----CeEEEEecccCCccccc--
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TN-P----KLEFVVANIADQNLESI-- 100 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~-~----~i~~~~~Di~~~~l~~~-- 100 (433)
+++..++|+|||-|..+..+-+ .+..+++|+||++..++.|++++ .. . .+.|+.+|.....+.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~k----AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDK----AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred ccccccceeccCCcccHhHhhh----hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 5688899999999998866654 33358999999999999999998 11 1 36788898765444432
Q ss_pred -ccCcEeEEEEcccccch----hhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccc
Q psy11646 101 -FLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE 162 (433)
Q Consensus 101 -~~~~fD~Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~ 162 (433)
.+.+||+|-|-+++|+. ...+.+++|+.+.|+|||+++-+.+...-+...++.. ....|..
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gN 257 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGN 257 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcc
Confidence 23459999999999976 3466789999999999999998877665554444433 2234543
No 122
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=3.5e-10 Score=100.43 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=68.5
Q ss_pred EEEeCCHHHHHHHHhhcC------CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEE
Q psy11646 64 VGLDVSPNMIKHAKNHHT------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEV 137 (433)
Q Consensus 64 ~gvDiS~~~l~~A~~~~~------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~l 137 (433)
+|+|+|+.|++.|+++.. ..+++++++|+++.++++ ++||+|++..++|+++|+..++++++++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 589999999999987651 246999999999876654 89999999999999999999999999999999999
Q ss_pred EEEeccC
Q psy11646 138 LLLLNAF 144 (433)
Q Consensus 138 ll~~~~~ 144 (433)
++.+...
T Consensus 78 ~i~d~~~ 84 (160)
T PLN02232 78 SILDFNK 84 (160)
T ss_pred EEEECCC
Confidence 9987654
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=1.3e-09 Score=112.16 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=85.0
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc-cccC
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES-IFLA 103 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~-~~~~ 103 (433)
.+...++.+|||+|||+|..+..+ +...... .+++++|+++.+++.+++++ +..++++..+|+...+... ...+
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~l-a~~~~~~-g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHI-AELMGDQ-GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHH-HHHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccc
Confidence 345578999999999999999444 4443322 39999999999999999887 4457899999987643110 1236
Q ss_pred cEeEEEEcc------cccchhh----------------HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 104 KFNKIFSFY------CLHWVQD----------------QRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 104 ~fD~Vis~~------~l~~~~d----------------~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
+||.|++.. ++++.++ +...+.++.++|||||+++.++.+..+
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 899999743 3332221 467899999999999999988755443
No 124
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.07 E-value=8e-10 Score=115.41 Aligned_cols=101 Identities=25% Similarity=0.360 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEeEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
++.+|||+|||+|.++..+ +...+. .+++++|+|+.+++.|+++. . ..++.+.++|+... ++ .++||+|
T Consensus 138 ~~~~VLDlG~GsG~iai~l-a~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~---~~~fDlI 210 (506)
T PRK01544 138 KFLNILELGTGSGCIAISL-LCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IE---KQKFDFI 210 (506)
T ss_pred CCCEEEEccCchhHHHHHH-HHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-Cc---CCCccEE
Confidence 3568999999999999444 434444 49999999999999999987 2 24688999887542 22 2689999
Q ss_pred EEcccccch--------------------------hhHHHHHHHHHHhccCCCEEEEE
Q psy11646 109 FSFYCLHWV--------------------------QDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 109 is~~~l~~~--------------------------~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+++...... ......++++.++|+|||.+++.
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 997643221 11244677888999999998875
No 125
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.06 E-value=1.2e-09 Score=102.94 Aligned_cols=132 Identities=17% Similarity=0.311 Sum_probs=98.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccc
Q psy11646 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLE 98 (433)
Q Consensus 23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~ 98 (433)
..++..+...||.+|||.|.|+|.++..++....|.| +|+..|+.++.++.|++++ ...++++...|+....+.
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G--~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTG--HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTS--EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCe--EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 3566777889999999999999999955555555655 9999999999999999998 335899999999755453
Q ss_pred ccccCcEeEEEEcccccchhhHHHHHHHHHHhc-cCCCEEEEEeccCCchhhHHHhhhcCCCccc
Q psy11646 99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLL-MPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE 162 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~L-kpGG~lll~~~~~~p~~~~~~~~~~~~~W~~ 162 (433)
......+|.|+. .++++..++..+.+.| +|||+++...++...+......+...+ |..
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~g-f~~ 166 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHG-FTD 166 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTT-EEE
T ss_pred ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCC-Cee
Confidence 333478999987 5567888999999999 899999998888877777777777643 543
No 126
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.5e-09 Score=104.93 Aligned_cols=119 Identities=22% Similarity=0.364 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646 14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA 90 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~ 90 (433)
-+++++.+++.++..+...+. +|||+|||||..+ ..++...+. .+|+|+|+|+.+++.|++++ +..++.+++.
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~ia-i~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~ 167 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDK-RILDLGTGSGAIA-IALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVLVVQS 167 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHH-HHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEee
Confidence 345677777776644443333 8999999999999 555655555 49999999999999999998 2244555555
Q ss_pred cccCCcccccccCcEeEEEEcccccchh-------------------------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHWVQ-------------------------DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~-------------------------d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|.... +. ++||+|++|...--.+ -....+.++.+.|+|||.+++-.
T Consensus 168 dlf~~-~~----~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 168 DLFEP-LR----GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ecccc-cC----CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 54332 22 5899999987542111 13456788899999999877753
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=1.7e-09 Score=96.96 Aligned_cols=109 Identities=11% Similarity=0.240 Sum_probs=79.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccccc
Q psy11646 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESI 100 (433)
Q Consensus 22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~ 100 (433)
++.+++.+...++.+|||||||+|.++..++.. + .+++++|+++.+++.+++++ ...+++++.+|+.+.+++.
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~----~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~- 75 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER----A-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK- 75 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc----C-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccc-
Confidence 345666677778889999999999999655542 2 48999999999999999987 3468999999998875543
Q ss_pred ccCcEeEEEEcccccchhh-HHHHHHHHHHhccCCCEEEEE
Q psy11646 101 FLAKFNKIFSFYCLHWVQD-QRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d-~~~~l~~i~~~LkpGG~lll~ 140 (433)
.+||.|+++..++.... ...++++ ..+.++|.+++.
T Consensus 76 --~~~d~vi~n~Py~~~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 76 --LQPYKVVGNLPYNISTPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred --cCCCEEEECCCcccHHHHHHHHHhc--CCCcceEEEEEE
Confidence 46999999988775322 2223322 123467777664
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.05 E-value=1.8e-09 Score=103.70 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=82.5
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
+..+++.+|||+|||+|..+. .++...... ..++++|+++.+++.+++++ +..++.+...|....+.. .+.|
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~-~la~~~~~~-g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~f 141 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTT-QISALMKNE-GAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKF 141 (264)
T ss_pred hCCCCcCEEEEECCCchHHHH-HHHHHcCCC-CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCC
Confidence 345688999999999999994 444444333 38999999999999999887 335688888887654322 2569
Q ss_pred eEEEEcccccc--------------h--------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 106 NKIFSFYCLHW--------------V--------QDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 106 D~Vis~~~l~~--------------~--------~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
|.|++...... . ..+...++++.++|||||+++.++.+..+
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99997432111 0 12346899999999999999988765544
No 129
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2e-09 Score=103.38 Aligned_cols=117 Identities=22% Similarity=0.284 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeE----EEEecc
Q psy11646 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLE----FVVANI 92 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~----~~~~Di 92 (433)
.+.-.|+.+-+.. .++.+|||+|||||.+++..+. + |..+++|+|++|.+++.|++++...++. ....+.
T Consensus 148 TT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~k--L--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~ 221 (300)
T COG2264 148 TTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAK--L--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL 221 (300)
T ss_pred hHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHH--c--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc
Confidence 3334444433333 4789999999999999844332 2 3248999999999999999998222333 222222
Q ss_pred cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
... ...++||+|++|-.-+- ...+...+.+.+||||+++++..-...
T Consensus 222 ~~~----~~~~~~DvIVANILA~v---l~~La~~~~~~lkpgg~lIlSGIl~~q 268 (300)
T COG2264 222 LEV----PENGPFDVIVANILAEV---LVELAPDIKRLLKPGGRLILSGILEDQ 268 (300)
T ss_pred hhh----cccCcccEEEehhhHHH---HHHHHHHHHHHcCCCceEEEEeehHhH
Confidence 111 12269999999873221 357788999999999999998654433
No 130
>PHA03411 putative methyltransferase; Provisional
Probab=99.02 E-value=2.6e-09 Score=101.46 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF 111 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~ 111 (433)
.++.+|||+|||+|.++..++. ..+. .+++|+|+++.|++.|+++. ++++++++|+.+... ..+||+|+++
T Consensus 63 ~~~grVLDLGcGsGilsl~la~-r~~~--~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~----~~kFDlIIsN 133 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLH-RCKP--EKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFES----NEKFDVVISN 133 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHH-hCCC--CEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcc----cCCCcEEEEc
Confidence 3467999999999999844433 2222 48999999999999999986 578899999876532 2689999999
Q ss_pred ccccchhh--------------------HHHHHHHHHHhccCCCEEEEE
Q psy11646 112 YCLHWVQD--------------------QRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 112 ~~l~~~~d--------------------~~~~l~~i~~~LkpGG~lll~ 140 (433)
.++++.+. ....+.....+|+|+|.+.+.
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 99887521 134566778888899876665
No 131
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=3.2e-09 Score=109.04 Aligned_cols=114 Identities=22% Similarity=0.346 Sum_probs=81.8
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcE
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
.+...++.+|||+|||+|..+..++ ...+. .+++++|+++.+++.+++++ ...++++.++|+..... ....++|
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la-~~~~~--~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-~~~~~~f 314 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHIL-ELAPQ--AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-WWDGQPF 314 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHH-HHcCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh-hcccCCC
Confidence 3445689999999999999995444 44333 49999999999999999987 22346888899875321 0123679
Q ss_pred eEEEEccccc------------ch----------hhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 106 NKIFSFYCLH------------WV----------QDQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 106 D~Vis~~~l~------------~~----------~d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
|.|++..... |. .....++.++.++|||||.++.++.+..
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999654321 11 1134689999999999999998875433
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=2.3e-09 Score=109.94 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=83.5
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
+...++.+|||+|||+|..+..+ +.....+ .+++++|+|+.+++.+++++ +..++++.+.|....+ ....++|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~l-a~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~--~~~~~~f 308 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAI-AELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT--EYVQDTF 308 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHH-HHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh--hhhhccC
Confidence 44578899999999999998444 4443323 49999999999999999987 3356889999987542 1223789
Q ss_pred eEEEEcccc------cchh----------------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 106 NKIFSFYCL------HWVQ----------------DQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 106 D~Vis~~~l------~~~~----------------d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
|.|++.... ..-+ .+.+.+.++.+.|||||.++.++.+..+
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 999974322 1111 2356799999999999999998765443
No 133
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.00 E-value=5.6e-09 Score=98.98 Aligned_cols=107 Identities=25% Similarity=0.416 Sum_probs=85.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
..+.....+.+..+|+|||+|+|.++.. +++..|.. +++..|. |..++.+++ ..++++..+|+. .+++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~-l~~~~P~l--~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f-~~~P---- 157 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIA-LARAYPNL--RATVFDL-PEVIEQAKE---ADRVEFVPGDFF-DPLP---- 157 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHH-HHHHSTTS--EEEEEE--HHHHCCHHH---TTTEEEEES-TT-TCCS----
T ss_pred hhhhccccccCccEEEeccCcchHHHHH-HHHHCCCC--cceeecc-Hhhhhcccc---ccccccccccHH-hhhc----
Confidence 5566677777788999999999999954 45566654 9999998 888999888 489999999997 4455
Q ss_pred CcEeEEEEcccccchhh--HHHHHHHHHHhccCC--CEEEEEec
Q psy11646 103 AKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPG--GEVLLLLN 142 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpG--G~lll~~~ 142 (433)
. +|+++..++||...+ ....|+++++.|+|| |++++.+.
T Consensus 158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 4 999999999998865 457899999999999 99999864
No 134
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=2.4e-09 Score=110.46 Aligned_cols=113 Identities=17% Similarity=0.287 Sum_probs=83.0
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAK 104 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~ 104 (433)
.+...++.+|||+|||+|..+. .++...... .+++++|+|+.+++.+++++ +..++++.++|+.... + .++
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~-~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~---~~~ 318 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKST-FMAELMQNR-GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-P---EEQ 318 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHH-HHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-c---CCC
Confidence 3445678999999999999884 444433333 49999999999999999887 3356889999987653 2 268
Q ss_pred EeEEEEcc------ccc------ch----------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 105 FNKIFSFY------CLH------WV----------QDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 105 fD~Vis~~------~l~------~~----------~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
||.|++-. .+. |. ..+...+.++.++|||||+++..+.+..+
T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99999631 110 11 12346899999999999999998866554
No 135
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=3.3e-09 Score=102.79 Aligned_cols=124 Identities=23% Similarity=0.298 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C--CCCeEEEEe
Q psy11646 15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T--NPKLEFVVA 90 (433)
Q Consensus 15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~--~~~i~~~~~ 90 (433)
++-++-.|+.+.+. ..++.+|||+|||||-++... ++ ++. .+|+|+|++|.+++.|+++. . ..++.+ .
T Consensus 145 H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA-~k-lGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~ 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAA-AK-LGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEV--S 216 (295)
T ss_dssp CHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHH-HH-TTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--S
T ss_pred CHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHH-HH-cCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--E
Confidence 34444444444333 257889999999999998433 32 232 48999999999999999998 2 123332 2
Q ss_pred cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~ 154 (433)
...+ .. .++||+|++|-..+-+ ...+..+.++|+|||+++++..-......+...+
T Consensus 217 ~~~~--~~---~~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~ 272 (295)
T PF06325_consen 217 LSED--LV---EGKFDLVVANILADVL---LELAPDIASLLKPGGYLILSGILEEQEDEVIEAY 272 (295)
T ss_dssp CTSC--TC---CS-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred Eecc--cc---cccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH
Confidence 1111 22 2899999998765433 4567788999999999999865555444444444
No 136
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=4.5e-09 Score=108.49 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=81.5
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAK 104 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~ 104 (433)
.+...++.+|||+|||+|..+..++....+. .+++++|+++.+++.+++++ +..++++.++|+.... .. ..++
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~-~~~~ 320 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-EK-FAEK 320 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-ch-hccc
Confidence 3345678899999999999995444432233 49999999999999999887 3346899999987642 11 1268
Q ss_pred EeEEEEcccccch---------------h-------hHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 105 FNKIFSFYCLHWV---------------Q-------DQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 105 fD~Vis~~~l~~~---------------~-------d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
||+|++....... . -...++.++.++|||||.++.++...
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 9999986432110 0 12457999999999999999775443
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.98 E-value=4.4e-09 Score=108.03 Aligned_cols=116 Identities=19% Similarity=0.274 Sum_probs=80.3
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--CCCeEE--EEecccCCccccccc
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--NPKLEF--VVANIADQNLESIFL 102 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--~~~i~~--~~~Di~~~~l~~~~~ 102 (433)
..+...++.+|||+|||+|..+. .++...+. .+++++|+++.+++.+++++. .-.+.+ ..+|...... ....
T Consensus 232 ~~L~~~~g~~VLDlcag~G~kt~-~la~~~~~--~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~-~~~~ 307 (426)
T TIGR00563 232 TWLAPQNEETILDACAAPGGKTT-HILELAPQ--AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ-WAEN 307 (426)
T ss_pred HHhCCCCCCeEEEeCCCccHHHH-HHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc-cccc
Confidence 33455789999999999999994 44444443 499999999999999998872 112333 4555443221 0123
Q ss_pred CcEeEEEEc------ccccchhh----------------HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 103 AKFNKIFSF------YCLHWVQD----------------QRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 103 ~~fD~Vis~------~~l~~~~d----------------~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
++||.|++. ++++..++ +...+.++.++|||||.++.++.+..+
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 689999963 23433222 467899999999999999998766543
No 138
>PRK04457 spermidine synthase; Provisional
Probab=98.97 E-value=4.8e-09 Score=100.63 Aligned_cols=110 Identities=18% Similarity=0.287 Sum_probs=81.3
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.++.+|||||||+|.++ ..++...|.. +++++|+++.+++.|++.+. .++++++.+|+.+. +.. ..++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~-~~l~~~~p~~--~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l~~-~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLA-KFIYTYLPDT--RQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-IAV-HRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHH-HHHHHhCCCC--eEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-HHh-CCCCCCE
Confidence 35679999999999998 5555555554 89999999999999999872 36899999997653 221 2368999
Q ss_pred EEEcccc-cchh---hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 108 IFSFYCL-HWVQ---DQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 108 Vis~~~l-~~~~---d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
|++...- ...+ ....+++++.+.|+|||.+++......+
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 9975311 1111 1368899999999999999886544433
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.93 E-value=9.6e-09 Score=96.92 Aligned_cols=114 Identities=15% Similarity=0.240 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEeccc
Q psy11646 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIA 93 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~ 93 (433)
..++|..++.. .++.+|||+|||+|..+..+++ ..+.. .+++++|+++++++.|++++ ...+++++.+|+.
T Consensus 56 ~g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~-~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 56 EGLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTAL-ALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred HHHHHHHHHHH---hCCCEEEEecCcccHHHHHHHH-hCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 34455555544 4577999999999998844444 33333 49999999999999999988 2357999999986
Q ss_pred CCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 94 DQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 94 ~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+. ++.. ..++||+|+.-..= +.....+..+.++|+|||.+++.
T Consensus 131 ~~-L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 131 SA-LDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HH-HHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEE
Confidence 53 2221 13689999885431 33456788999999999987764
No 140
>KOG2940|consensus
Probab=98.93 E-value=2.5e-09 Score=97.07 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=93.8
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFNKIFSF 111 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~ 111 (433)
....++|||||-|.....++. .+..+++-+|.|..|++.++..- ..-.+...+.|-+..++.+ +++|+|++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~----e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~e---ns~DLiisS 144 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRG----EGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKE---NSVDLIISS 144 (325)
T ss_pred hCcceeecccchhhhhHHHHh----cchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccc---cchhhhhhh
Confidence 355799999999999955544 33458999999999999998763 2234567788877766555 999999999
Q ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHh
Q psy11646 112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK 153 (433)
Q Consensus 112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~ 153 (433)
..+||+.+.+..+.+++..|||+|.++.+.++...+++....
T Consensus 145 lslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s 186 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS 186 (325)
T ss_pred hhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHH
Confidence 999999999999999999999999999888888888776643
No 141
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.93 E-value=2.5e-08 Score=96.16 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA 103 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~ 103 (433)
++.+.+||+||||+|..+..++. ..+ ..+++++|+++.+++.|++.+ ..+++++...|.... +. ...+
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~-~~~--~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-l~-~~~~ 144 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLK-HKS--VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-LA-DTEN 144 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHh-CCC--cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-HH-hCCC
Confidence 34456999999999999855554 222 248999999999999999875 135677877776442 11 1137
Q ss_pred cEeEEEEcccccch--hh--HHHHHHHHHHhccCCCEEEEE
Q psy11646 104 KFNKIFSFYCLHWV--QD--QRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 104 ~fD~Vis~~~l~~~--~d--~~~~l~~i~~~LkpGG~lll~ 140 (433)
+||+|++....... .+ ...+++.+.+.|+|||.+++.
T Consensus 145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 89999997653221 12 357889999999999998875
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=98.93 E-value=6.3e-09 Score=96.73 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
.+.+|||+|||+|.++..++.........+++++|+++.+++.|+++. .++.+...|+....+ .++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--~~~~~~~~D~~~~~~----~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--PEATWINADALTTEF----DTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--cCCEEEEcchhcccc----cCCccEEEECC
Confidence 467999999999999854443222111248999999999999999886 568899999876433 26899999998
Q ss_pred cccchh-----------h-HHHHHHHHHHhccCCCE
Q psy11646 113 CLHWVQ-----------D-QRQAISNIYNLLMPGGE 136 (433)
Q Consensus 113 ~l~~~~-----------d-~~~~l~~i~~~LkpGG~ 136 (433)
.++-.. . ...++..+.+++++|+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 876331 1 34577888887776664
No 143
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.91 E-value=9e-09 Score=95.83 Aligned_cols=116 Identities=24% Similarity=0.383 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---------------CCC
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------------TNP 83 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------------~~~ 83 (433)
...|.+++..+..+++.+||..|||.|... ..|+. .| .+|+|+|+|+.+++.+.+.. ...
T Consensus 23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~-~~La~---~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 23 NPALVEYLDSLALKPGGRVLVPGCGKGYDM-LWLAE---QG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp THHHHHHHHHHTTSTSEEEEETTTTTSCHH-HHHHH---TT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHH-HHHHH---CC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 345556666666678889999999999998 55553 34 79999999999999984322 124
Q ss_pred CeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 84 KLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 84 ~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|++.++|+-..+ ....++||+|+=..+++.++ ...+..+.+.++|+|||.+++..
T Consensus 98 ~i~~~~gDfF~l~--~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 98 RITIYCGDFFELP--PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp SEEEEES-TTTGG--GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ceEEEEcccccCC--hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 6789999997743 22236899999998888774 46788999999999999955544
No 144
>KOG2904|consensus
Probab=98.86 E-value=2.7e-08 Score=92.80 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhcC---CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEE
Q psy11646 15 QLDAAKLLSQYIDQFK---WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEF 87 (433)
Q Consensus 15 ~~~~~~ll~~l~~~l~---~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~ 87 (433)
|+.++++++.+++.++ +..+..|||+|||+|+.+..++ ..++++ .++++|.|+.++..|.++. ...++.+
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll-~~L~~~--~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLL-HGLPQC--TVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHH-hcCCCc--eEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 4566666666666554 3356689999999999995554 455654 9999999999999999988 3467777
Q ss_pred EEecccCCcccc--cccCcEeEEEEcccccchh--------------------------hHHHHHHHHHHhccCCCEEEE
Q psy11646 88 VVANIADQNLES--IFLAKFNKIFSFYCLHWVQ--------------------------DQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 88 ~~~Di~~~~l~~--~~~~~fD~Vis~~~l~~~~--------------------------d~~~~l~~i~~~LkpGG~lll 139 (433)
+..+.+.....+ ...+++|+++||...-.-+ .......-+.|+|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 766665443322 3458999999987543221 122345566789999999888
Q ss_pred Eec
Q psy11646 140 LLN 142 (433)
Q Consensus 140 ~~~ 142 (433)
...
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 765
No 145
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.86 E-value=2.3e-08 Score=91.70 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEE
Q psy11646 14 QQLDAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVV 89 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~ 89 (433)
.|+....+.+.++..+.. .++.+|||+|||+|.++..++++ +..+++++|+++.+++.|++++ +..++++++
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr----~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~ 108 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSR----YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVN 108 (199)
T ss_pred cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHc----CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345555555555554432 45789999999999999555553 2248999999999999999987 335789999
Q ss_pred ecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHH--hccCCCEEEEEec
Q psy11646 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYN--LLMPGGEVLLLLN 142 (433)
Q Consensus 90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~--~LkpGG~lll~~~ 142 (433)
+|+... ++. ..++||+|++...+.. .-...++..+.. +|+|+|.+++...
T Consensus 109 ~D~~~~-l~~-~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 109 TNALSF-LAQ-PGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred chHHHH-Hhh-cCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 998653 221 2257999999998542 223344454444 4789998887643
No 146
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.85 E-value=1.6e-08 Score=92.39 Aligned_cols=118 Identities=20% Similarity=0.371 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCh--hHHHHhccc-C---CCCCcEEEEEeCCHHHHHHHHhhc-C-----------
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGN--VTSKLLLPN-L---PKSVVKLVGLDVSPNMIKHAKNHH-T----------- 81 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~--~~~~~l~~~-~---~~~~~~v~gvDiS~~~l~~A~~~~-~----------- 81 (433)
.++..+++.....+..+|+-.||++|. ++..++... . .....+++|+|+|+.+++.|++-. .
T Consensus 18 ~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~ 97 (196)
T PF01739_consen 18 EVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAY 97 (196)
T ss_dssp HHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHH
T ss_pred HHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHH
Confidence 334334433333356899999999995 333333322 1 111268999999999999997643 0
Q ss_pred -------------------CCCeEEEEecccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEE
Q psy11646 82 -------------------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 82 -------------------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~ 140 (433)
...|.|.+.|+.+.... .+.||+|+|.+++-++.. ...+++.+++.|+|||.|++.
T Consensus 98 ~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~---~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 98 LRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPP---FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp HHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred HHHhccccCCCceeEChHHcCceEEEecccCCCCcc---cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 12488999998872222 378999999999988854 578999999999999999985
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.84 E-value=2.4e-08 Score=103.10 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646 14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA 90 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~ 90 (433)
.+..++.+++.+++.+...++.+|||+|||+|.++.. +++. . .+++|+|+|+.|++.|++++ +..++++.++
T Consensus 278 n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~-la~~---~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~ 352 (443)
T PRK13168 278 NAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLP-LARQ---A-AEVVGVEGVEAMVERARENARRNGLDNVTFYHA 352 (443)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHH-HHHh---C-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe
Confidence 4555677888888877767889999999999999954 4432 2 48999999999999999987 3357999999
Q ss_pred cccCCcccc--cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 91 NIADQNLES--IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 91 Di~~~~l~~--~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+.+. +.. ...++||+|++...-... ...+..+.+ ++|++.++++.
T Consensus 353 d~~~~-l~~~~~~~~~fD~Vi~dPPr~g~---~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 353 NLEED-FTDQPWALGGFDKVLLDPPRAGA---AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ChHHh-hhhhhhhcCCCCEEEECcCCcCh---HHHHHHHHh-cCCCeEEEEEe
Confidence 98653 211 123679999998775543 234555554 68888877764
No 148
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.80 E-value=6.1e-08 Score=98.13 Aligned_cols=104 Identities=22% Similarity=0.227 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEEEecccCCccccc--ccCcE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFVVANIADQNLESI--FLAKF 105 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~~~Di~~~~l~~~--~~~~f 105 (433)
++.+|||+|||+|.++..++. .+..+++++|+|+.+++.|++++ +. .+++++++|+.+. +... ..++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~----~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~-l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM----GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-LRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH-HHHHHhcCCCC
Confidence 578999999999999854433 22258999999999999999988 22 3689999998764 2221 13689
Q ss_pred eEEEEcccccch---------hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLHWV---------QDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~~~---------~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+|++....... .+....+....++|+|||.++...
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 999998764321 123445567789999999988754
No 149
>KOG2899|consensus
Probab=98.80 E-value=4e-08 Score=90.16 Aligned_cols=106 Identities=24% Similarity=0.532 Sum_probs=72.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-CCCeEEEE--------------------
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-NPKLEFVV-------------------- 89 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-~~~i~~~~-------------------- 89 (433)
+..+..+|||||.+|.++. .+++.+... .+.|+||++..++.|++... ....++.+
T Consensus 56 ~f~~~~~LDIGCNsG~lt~-~iak~F~~r--~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTL-SIAKDFGPR--RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred ccCcceeEeccCCcchhHH-HHHHhhccc--eeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3467789999999999994 555555544 79999999999999999871 11111111
Q ss_pred -----------------eccc--CCcccccccCcEeEEEEcccccch------hhHHHHHHHHHHhccCCCEEEE
Q psy11646 90 -----------------ANIA--DQNLESIFLAKFNKIFSFYCLHWV------QDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 90 -----------------~Di~--~~~l~~~~~~~fD~Vis~~~l~~~------~d~~~~l~~i~~~LkpGG~lll 139 (433)
.+.. ...+-+.....||+|+|..+--|+ +....+++.++++|.|||++++
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 1000 000111234679999997765544 2367899999999999999887
No 150
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.78 E-value=4.6e-08 Score=88.95 Aligned_cols=128 Identities=18% Similarity=0.260 Sum_probs=88.6
Q ss_pred hhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCC
Q psy11646 7 YETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNP 83 (433)
Q Consensus 7 Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~ 83 (433)
|+......+....++|.+++. ..+.+|||||||||..+ ..+++.+|.- ++.-.|..+..+...+... ..+
T Consensus 3 ~spAaeRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa-~~FA~~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~ 75 (204)
T PF06080_consen 3 FSPAAERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHA-VYFAQALPHL--TWQPSDPDDNLRPSIRAWIAEAGLP 75 (204)
T ss_pred CChhhhhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHH-HHHHHHCCCC--EEcCCCCChHHHhhHHHHHHhcCCc
Confidence 444555566666666665542 22336999999999999 6777788865 8888899888764444332 223
Q ss_pred CeE-EEEecccCCccccc-----ccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 84 KLE-FVVANIADQNLESI-----FLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 84 ~i~-~~~~Di~~~~l~~~-----~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
++. -+..|+...+.+-. ..++||.|++.+++|-++ ..+..++.+.++|++||.+++-.
T Consensus 76 Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 76 NVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 332 34567766532221 346899999999999774 46788999999999999998864
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.78 E-value=4.6e-08 Score=106.31 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEEEecccCCcccccccCcEeE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
++.+|||+|||+|.++..++. .+..+|+++|+|+.+++.|++++ +. .+++++++|+.+. +.. ..++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~----~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l~~-~~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAAL----GGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-LKE-AREQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-HHH-cCCCcCE
Confidence 478999999999999955543 23247999999999999999998 22 3789999998653 221 1368999
Q ss_pred EEEccccc-----------chhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 108 IFSFYCLH-----------WVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 108 Vis~~~l~-----------~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|++..... ...+....+..+.++|+|||.+++..
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 99975431 12345677888999999999987754
No 152
>KOG3191|consensus
Probab=98.78 E-value=1.4e-07 Score=82.97 Aligned_cols=126 Identities=17% Similarity=0.295 Sum_probs=91.7
Q ss_pred HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccC
Q psy11646 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLA 103 (433)
Q Consensus 26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~ 103 (433)
...+......-+||||||+|..+ .++++..... ..+.++|++|.+++..++.+ ...++..++.|+.+. +.. +
T Consensus 36 ~~eL~~~~~~i~lEIG~GSGvvs-tfL~~~i~~~-~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~---~ 109 (209)
T KOG3191|consen 36 AAELKGHNPEICLEIGCGSGVVS-TFLASVIGPQ-ALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRN---E 109 (209)
T ss_pred HHHHhhcCceeEEEecCCcchHH-HHHHHhcCCC-ceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hcc---C
Confidence 33443344678999999999999 6666555433 68999999999999987776 345677888887654 443 8
Q ss_pred cEeEEEEcccccch-----------------hh----HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcC
Q psy11646 104 KFNKIFSFYCLHWV-----------------QD----QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRK 157 (433)
Q Consensus 104 ~fD~Vis~~~l~~~-----------------~d----~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~ 157 (433)
+.|+++.+..+.-. .+ ..+.+..+-.+|.|.|.+++.....+...++.+.+...
T Consensus 110 ~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 110 SVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKK 184 (209)
T ss_pred CccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhc
Confidence 99999987654211 11 34567777789999999999988888877777755543
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.77 E-value=6.6e-08 Score=86.95 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhc-------CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C----CC
Q psy11646 17 DAAKLLSQYIDQF-------KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T----NP 83 (433)
Q Consensus 17 ~~~~ll~~l~~~l-------~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~----~~ 83 (433)
.+..+|.+++... ...++.+|||+|||+|-.+ ..++...+. .+|+.+|..+ .++..+.+. . ..
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~g-i~~a~~~~~--~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~ 97 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPG-IAAAKLFGA--ARVVLTDYNE-VLELLRRNIELNGSLLDG 97 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHH-HHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhH-HHHHhccCC--ceEEEeccch-hhHHHHHHHHhccccccc
Confidence 4445555555442 2346889999999999888 444443222 5999999998 888888876 1 35
Q ss_pred CeEEEEecccCCcccc-cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 84 KLEFVVANIADQNLES-IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 84 ~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
++.+..+|..+..... ....+||+|++..+++.....+.+++.+.++|+|+|.+++...
T Consensus 98 ~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 98 RVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp --EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 6788888876532122 2236899999999999888889999999999999999777653
No 154
>PRK01581 speE spermidine synthase; Validated
Probab=98.77 E-value=4.1e-08 Score=96.83 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh----------cCCCCeEEEEecccCCccccc
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH----------HTNPKLEFVVANIADQNLESI 100 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~----------~~~~~i~~~~~Di~~~~l~~~ 100 (433)
+..+.+||+||||+|..+..+++ ..+ ..+++++|+++.+++.|++. +..++++++.+|.... +. .
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk-~~~--v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-L~-~ 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLK-YET--VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-LS-S 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHh-cCC--CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-HH-h
Confidence 34567999999999998855554 322 24899999999999999972 1357899999998763 22 1
Q ss_pred ccCcEeEEEEcccccc---hhh--HHHHHHHHHHhccCCCEEEEE
Q psy11646 101 FLAKFNKIFSFYCLHW---VQD--QRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~---~~d--~~~~l~~i~~~LkpGG~lll~ 140 (433)
..++||+|++...-.. ... ...+++.+++.|+|||.++..
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 2368999999743111 111 256889999999999998775
No 155
>PLN02672 methionine S-methyltransferase
Probab=98.76 E-value=3.6e-08 Score=109.55 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhcCCC--CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC---------
Q psy11646 15 QLDAAKLLSQYIDQFKWT--DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN--------- 82 (433)
Q Consensus 15 ~~~~~~ll~~l~~~l~~~--~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~--------- 82 (433)
|++++.+++. +...+.. ++.+|||+|||+|..+ ..++...+.. +++|+|+|+.+++.|+++. ..
T Consensus 99 RpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Ia-i~La~~~~~~--~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 99 EDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWIS-IAIAEKWLPS--KVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred chhHHHHHHH-HHhcccccCCCCEEEEEecchHHHH-HHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 4566666666 4333211 3568999999999999 4445454544 9999999999999998887 11
Q ss_pred ---------CCeEEEEecccCCcccccccCcEeEEEEcccccch----------------------------------hh
Q psy11646 83 ---------PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV----------------------------------QD 119 (433)
Q Consensus 83 ---------~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~----------------------------------~d 119 (433)
.+++++++|+.+. +.. ...+||+|++|...-.. +|
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~-~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGY-CRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred cccccccccccEEEEECchhhh-ccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 3689999998654 221 11369999998653110 00
Q ss_pred ----HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 120 ----QRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 120 ----~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
....+.+..++|+|||.+++- .+..+
T Consensus 253 GL~~yr~i~~~a~~~L~pgG~l~lE-iG~~q 282 (1082)
T PLN02672 253 GLGLIARAVEEGISVIKPMGIMIFN-MGGRP 282 (1082)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEE-ECccH
Confidence 256678888999999988764 34444
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.76 E-value=6.9e-08 Score=89.13 Aligned_cols=116 Identities=17% Similarity=0.294 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEE-e
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVV-A 90 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~-~ 90 (433)
+..-.+|..++.. .++.+|||||++.|..+ .+++...+.. .+++.+|+++++.+.|++++ ...+++.+. +
T Consensus 45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySa-l~mA~~l~~~-g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 45 PETGALLRLLARL---SGPKRILEIGTAIGYSA-LWMALALPDD-GRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred hhHHHHHHHHHHh---cCCceEEEeecccCHHH-HHHHhhCCCC-CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence 5556666666655 46789999999999999 4555566633 39999999999999999998 234577777 4
Q ss_pred cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
|..+. +.....++||+||.-.. -.+....+..+.++|+|||.+++-
T Consensus 120 dal~~-l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 120 DALDV-LSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cHHHH-HHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 65443 22234589999997332 124577899999999999998774
No 157
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.75 E-value=7.2e-08 Score=88.18 Aligned_cols=144 Identities=22% Similarity=0.326 Sum_probs=94.2
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC--CC-eEEEEecccCCcccccccCcEeEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--PK-LEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~--~~-i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
...+.||.|||-|..|..+|.+. +.+|..+|..+..++.|++.... .+ .++.+..+++...+ .++||+|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~----f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~---~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV----FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE---EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-----SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh----cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC---CCcEeEEE
Confidence 35689999999999997777754 34899999999999999987733 23 45666666654322 27999999
Q ss_pred Ecccccchhh--HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEEcccccc
Q psy11646 110 SFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKE 187 (433)
Q Consensus 110 s~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iqgDi~~~ 187 (433)
+-+++-|+.| ....|+++...|+|+|.+++=++.... + ...+. ..|-.-.
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~-----------~-~~~~D----------------~~DsSvT 179 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS-----------G-FDEFD----------------EEDSSVT 179 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS-----------S-EEEEE----------------TTTTEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC-----------C-CcccC----------------CccCeee
Confidence 9999999965 568899999999999999987654332 1 00000 1111112
Q ss_pred chHHHHHHhcCCCCCeEEEecCCC
Q psy11646 188 STIKEIFSHFDDEKVDLVVFDGAP 211 (433)
Q Consensus 188 ~t~~~il~~~~~~~~dlVvsD~ap 211 (433)
.+.+.+.+.|..++..+|-+..-+
T Consensus 180 Rs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 180 RSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp EEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred cCHHHHHHHHHHcCCEEEEecccc
Confidence 356777788888888887765544
No 158
>PLN02366 spermidine synthase
Probab=98.75 E-value=6.4e-08 Score=94.66 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=77.9
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA 103 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~ 103 (433)
++.+.+||+||||.|..+..+++ . +. ..+++.+|+++.+++.|++.+ ..++++++.+|.... +.....+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk-~-~~-v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~-l~~~~~~ 164 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIAR-H-SS-VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF-LKNAPEG 164 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHh-C-CC-CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH-HhhccCC
Confidence 35678999999999999855554 3 22 258999999999999999976 246899999997543 1211136
Q ss_pred cEeEEEEcccccchhh----HHHHHHHHHHhccCCCEEEEE
Q psy11646 104 KFNKIFSFYCLHWVQD----QRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d----~~~~l~~i~~~LkpGG~lll~ 140 (433)
+||+|++-..-.+.+. ...+++.+++.|+|||.++..
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 8999998554332221 246789999999999998754
No 159
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.74 E-value=1.4e-07 Score=81.97 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=96.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc--cc
Q psy11646 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN--LE 98 (433)
Q Consensus 21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~--l~ 98 (433)
+.+.++..+.+..|.-|||+|.|+|.+|..+|+...++. .++.++.|++......+++ +.+.++.+|+.+.. +.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~--~L~~iE~~~dF~~~L~~~~--p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPE--SLTAIEYSPDFVCHLNQLY--PGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCcc--ceEEEEeCHHHHHHHHHhC--CCccccccchhhHHHHHh
Confidence 445667777788899999999999999988888776665 8999999999999999988 56668888887754 44
Q ss_pred ccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 99 SIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
+.....||.|+|...+-.++ ...+.++.+...|++||.++....+
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 45567899999988876664 3456789999999999998877655
No 160
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.74 E-value=1.8e-07 Score=92.34 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEeccc
Q psy11646 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIA 93 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~ 93 (433)
.+..+++.+.+.+...++.+|||+|||+|.++..+ +. .+ .+++|+|+|+.+++.|++++ +..+++|.++|+.
T Consensus 157 ~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~l-a~---~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~ 231 (315)
T PRK03522 157 VAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHC-AT---PG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDST 231 (315)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHH-Hh---cC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHH
Confidence 34455554444443335789999999999999444 43 22 58999999999999999887 3357999999987
Q ss_pred CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+... ...+.||+|++...-..+ ...+.+....++|++.++++.
T Consensus 232 ~~~~--~~~~~~D~Vv~dPPr~G~---~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 232 QFAT--AQGEVPDLVLVNPPRRGI---GKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred HHHH--hcCCCCeEEEECCCCCCc---cHHHHHHHHHcCCCeEEEEEC
Confidence 6421 122579999998763322 122223334467777666643
No 161
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.72 E-value=6e-08 Score=88.87 Aligned_cols=103 Identities=17% Similarity=0.407 Sum_probs=77.4
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccc-cccCcEeEEEEc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLES-IFLAKFNKIFSF 111 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~ 111 (433)
.+||||||.|.++ ..++...|.. .++|+|++...+..|.++. ...|+.++++|+... +.. ..++++|.|..+
T Consensus 20 l~lEIG~G~G~~l-~~~A~~~Pd~--n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFL-IELAKRNPDI--NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-LRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHH-HHHHHHSTTS--EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-HHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHH-HHHHHHCCCC--CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-HhhcccCCchheEEEe
Confidence 8999999999999 4555566654 9999999999999988877 668999999998764 333 334899999998
Q ss_pred ccccchhh--------HHHHHHHHHHhccCCCEEEEEec
Q psy11646 112 YCLHWVQD--------QRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 112 ~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
++=-|... ....+..+.++|+|||.+.+.+-
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 87666532 35789999999999999988753
No 162
>PLN02476 O-methyltransferase
Probab=98.72 E-value=1.4e-07 Score=90.56 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEec
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVAN 91 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~D 91 (433)
+...+++..++.. .++.+|||||+|+|..+. .++...+.. .+++.+|.+++..+.|++++ + ..+++++.+|
T Consensus 104 ~~~g~lL~~L~~~---~~ak~VLEIGT~tGySal-~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd 178 (278)
T PLN02476 104 PDQAQLLAMLVQI---LGAERCIEVGVYTGYSSL-AVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL 178 (278)
T ss_pred HHHHHHHHHHHHh---cCCCeEEEecCCCCHHHH-HHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 3444555555554 356799999999999995 444444444 48999999999999999988 2 3589999999
Q ss_pred ccCCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 92 IADQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 92 i~~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+.+. ++.. ..++||+|+.-.. -.+....+..+.++|+|||.+++-
T Consensus 179 A~e~-L~~l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 179 AAES-LKSMIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHH-HHHHHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 8653 3321 1368999998543 234567788889999999998764
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.70 E-value=7.5e-08 Score=88.73 Aligned_cols=116 Identities=18% Similarity=0.306 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEec
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVAN 91 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~D 91 (433)
+...++|..++... ...+||||||++|..+. .++..++.+ .+++.+|+++...+.|++.+ + ..+++++.+|
T Consensus 31 ~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal-~la~~l~~~-g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd 105 (205)
T PF01596_consen 31 PETGQLLQMLVRLT---RPKRVLEIGTFTGYSAL-WLAEALPED-GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHHHHH---T-SEEEEESTTTSHHHH-HHHHTSTTT-SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-
T ss_pred HHHHHHHHHHHHhc---CCceEEEeccccccHHH-HHHHhhccc-ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 44556777666654 46699999999999994 555555554 59999999999999999987 2 3689999999
Q ss_pred ccCCccccc----ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 92 IADQNLESI----FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 92 i~~~~l~~~----~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+.+. ++.. ..++||+|+.-.. -.+....+..+.++|+|||.+++-
T Consensus 106 a~~~-l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 106 ALEV-LPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHH-HHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cHhh-HHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEc
Confidence 8653 2221 1258999998553 224566788888999999988764
No 164
>PRK03612 spermidine synthase; Provisional
Probab=98.70 E-value=1e-07 Score=100.20 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=79.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------CCCCeEEEEecccCCccccc
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----------TNPKLEFVVANIADQNLESI 100 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----------~~~~i~~~~~Di~~~~l~~~ 100 (433)
++++.+|||||||+|..+..+++ . +. ..+++++|+++++++.|+++. .+++++++..|.... +. .
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~-~-~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-l~-~ 369 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLK-Y-PD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-LR-K 369 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHh-C-CC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-HH-h
Confidence 35678999999999999965554 2 22 149999999999999999842 236899999998763 22 1
Q ss_pred ccCcEeEEEEcccccchhh-----HHHHHHHHHHhccCCCEEEEEe
Q psy11646 101 FLAKFNKIFSFYCLHWVQD-----QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d-----~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..++||+|++...-.+.+. ....++.+++.|+|||.+++..
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 2378999999865443221 2457899999999999988753
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.69 E-value=8e-08 Score=92.77 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES 99 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~ 99 (433)
.+++.+++.+...++.+|||||||+|.++..++. . + .+++|+|+++.|++.+++++...+++++++|+.+.++++
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~-~---~-~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLE-R---A-AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHH-h---C-CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 3455666666667889999999999999954443 3 2 389999999999999998874478999999998865543
Q ss_pred cccCcEeEEEEcccccc
Q psy11646 100 IFLAKFNKIFSFYCLHW 116 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~ 116 (433)
-.+|.|+++...+.
T Consensus 104 ---~~~~~vv~NlPY~i 117 (272)
T PRK00274 104 ---LQPLKVVANLPYNI 117 (272)
T ss_pred ---cCcceEEEeCCccc
Confidence 11589999887654
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.68 E-value=4.5e-07 Score=88.95 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=57.5
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC----CCeEEEE-ecccCCcccc--cccCc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN----PKLEFVV-ANIADQNLES--IFLAK 104 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~----~~i~~~~-~Di~~~~l~~--~~~~~ 104 (433)
++.+|||||||+|... .+++...+. ++++|+|+++.+++.|++++ .. .++++.. .|.... +.. ...+.
T Consensus 114 ~~~~vLDIGtGag~I~-~lLa~~~~~--~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i-~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIY-PLIGVHEYG--WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI-FKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHH-HHHHhhCCC--CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh-hhcccccCCc
Confidence 5679999999999887 555544432 69999999999999999988 22 3566653 232221 111 12368
Q ss_pred EeEEEEcccccch
Q psy11646 105 FNKIFSFYCLHWV 117 (433)
Q Consensus 105 fD~Vis~~~l~~~ 117 (433)
||+|+|+..+|.-
T Consensus 190 fDlivcNPPf~~s 202 (321)
T PRK11727 190 FDATLCNPPFHAS 202 (321)
T ss_pred eEEEEeCCCCcCc
Confidence 9999999998854
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.65 E-value=1.7e-07 Score=89.82 Aligned_cols=88 Identities=19% Similarity=0.397 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE 98 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~ 98 (433)
.+++.+++.+...++.+|||||||+|.++..++. . + .+++++|+++.+++.+++++ ...+++++++|+...+++
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~-~---~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAK-R---A-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHH-h---C-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch
Confidence 4455556666667889999999999999955544 2 2 48999999999999999987 346899999999875443
Q ss_pred ccccCcEeEEEEcccccch
Q psy11646 99 SIFLAKFNKIFSFYCLHWV 117 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~ 117 (433)
.||.|+++..++..
T Consensus 91 -----~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 91 -----EFNKVVSNLPYQIS 104 (258)
T ss_pred -----hceEEEEcCCcccC
Confidence 47999999887653
No 168
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.64 E-value=9.3e-08 Score=92.33 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=78.0
Q ss_pred CCEEEEECCCCCh--hHHHHhc-ccCC--CCCcEEEEEeCCHHHHHHHHhhc-C--------------------------
Q psy11646 34 NESVLDVGCGPGN--VTSKLLL-PNLP--KSVVKLVGLDVSPNMIKHAKNHH-T-------------------------- 81 (433)
Q Consensus 34 ~~~VLDIGcG~G~--~~~~~l~-~~~~--~~~~~v~gvDiS~~~l~~A~~~~-~-------------------------- 81 (433)
..+|+..||++|. ++..++. ...+ ....+|+|+|+|+.+++.|++-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999995 3333332 2221 11368999999999999998753 0
Q ss_pred -------CCCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646 82 -------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 82 -------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~ 140 (433)
...|+|.+.|+.+.+.+ ..+.||+|+|.+++.|+. ....+++++++.|+|||++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~--~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA--VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc--cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 03467888888764332 137899999999998884 4788999999999999988774
No 169
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.5e-07 Score=82.32 Aligned_cols=74 Identities=24% Similarity=0.428 Sum_probs=60.4
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
-.|.+|+|+|||||.++...+ +++. .+|+|+|+.+++++.++++. ...++.|...|+++.. +.+|.|+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~--~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~------~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAA--LLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR------GKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHH--hcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC------CccceEE
Confidence 357789999999999984332 3333 49999999999999999998 4467999999998753 7789999
Q ss_pred Eccccc
Q psy11646 110 SFYCLH 115 (433)
Q Consensus 110 s~~~l~ 115 (433)
+|..+-
T Consensus 114 mNPPFG 119 (198)
T COG2263 114 MNPPFG 119 (198)
T ss_pred ECCCCc
Confidence 998875
No 170
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.57 E-value=3.2e-07 Score=94.44 Aligned_cols=117 Identities=19% Similarity=0.247 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEec
Q psy11646 15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVAN 91 (433)
Q Consensus 15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~D 91 (433)
...+..+++.+.+.+...++.+|||+|||+|.++.. +++. ..+++|+|+++.|++.|++++ +..+++++.+|
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~-la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d 348 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLP-LAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGT 348 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHH-HHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 345556666666666666778999999999999954 4432 248999999999999999987 34689999999
Q ss_pred ccCCcccc--cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 92 IADQNLES--IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 92 i~~~~l~~--~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+.+. ++. ....+||+|++...-..+ ...+++.+. .++|++.++++
T Consensus 349 ~~~~-l~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 349 LETV-LPKQPWAGQIPDVLLLDPPRKGC--AAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred HHHH-HHHHHhcCCCCCEEEECcCCCCC--CHHHHHHHH-hcCCCEEEEEc
Confidence 8653 222 123579999987663221 244555544 37888876664
No 171
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.57 E-value=5.2e-07 Score=84.21 Aligned_cols=103 Identities=17% Similarity=0.334 Sum_probs=82.7
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CC-CCeEEEEecccCCcccccc-cCcEeEEEE
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TN-PKLEFVVANIADQNLESIF-LAKFNKIFS 110 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~-~~i~~~~~Di~~~~l~~~~-~~~fD~Vis 110 (433)
..+||||||.|.++ .-+++..|.. .++|+|+....+..|.++. .. .|+.+.+.|+... +.... +++.|.|..
T Consensus 50 pi~lEIGfG~G~~l-~~~A~~nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~-l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFL-VEMAKKNPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV-LDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHH-HHHHHHCCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHhcCCCCCeeEEEE
Confidence 57999999999999 5566667765 8999999999999998887 23 3899999998764 34333 359999999
Q ss_pred cccccchhh--------HHHHHHHHHHhccCCCEEEEEe
Q psy11646 111 FYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 111 ~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~ 141 (433)
++.=-|... ....++.+.+.|+|||.+.+.+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 987766532 3578999999999999999875
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.56 E-value=7.1e-07 Score=85.26 Aligned_cols=87 Identities=18% Similarity=0.350 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE 98 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~ 98 (433)
.++..+++.+...++.+|||||||+|.++..+ ++.. .+++++|+++.+++.+++++ ...++++..+|+...+++
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L-~~~~----~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPL-LKRA----KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHH-HHhC----CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh
Confidence 45556666676778899999999999999444 4332 37999999999999999887 346899999999876543
Q ss_pred ccccCcEe---EEEEcccccc
Q psy11646 99 SIFLAKFN---KIFSFYCLHW 116 (433)
Q Consensus 99 ~~~~~~fD---~Vis~~~l~~ 116 (433)
.+| +|+++..++.
T Consensus 91 -----~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 91 -----DFPKQLKVVSNLPYNI 106 (253)
T ss_pred -----HcCCcceEEEcCChhh
Confidence 355 8888887664
No 173
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.55 E-value=2.1e-06 Score=81.53 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCe-EEEEec
Q psy11646 17 DAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKL-EFVVAN 91 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i-~~~~~D 91 (433)
..++++...+..+.. ....+||||.||.|.....++...- ....++...|.|+..++..++.. +..++ +|.++|
T Consensus 118 ~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~-~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~d 196 (311)
T PF12147_consen 118 HLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHP-ERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGD 196 (311)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCC-CCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecC
Confidence 455666666666543 3577999999999999877776543 32258999999999999998887 33455 999999
Q ss_pred ccCCcccccccCcEeEEEEcccccchhh---HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHh
Q psy11646 92 IADQNLESIFLAKFNKIFSFYCLHWVQD---QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK 153 (433)
Q Consensus 92 i~~~~l~~~~~~~fD~Vis~~~l~~~~d---~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~ 153 (433)
+.+..--.......++++++..++.++| ....+..+.+.+.|||.++.+.-..+|-.+...+
T Consensus 197 Afd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr 261 (311)
T PF12147_consen 197 AFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIAR 261 (311)
T ss_pred CCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHH
Confidence 8663211122356799999999988876 4567999999999999999887666776665544
No 174
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.54 E-value=7e-07 Score=90.13 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecc
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANI 92 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di 92 (433)
..++.++..+.+.+...++.+|||+|||+|.++..++. .+ .+++|+|+++.+++.|++++ +..+++|..+|+
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~----~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~ 290 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAG----PD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS 290 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhh----cC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 34444444444443333567999999999999844442 23 58999999999999999987 335789999998
Q ss_pred cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 93 ~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.+.. .. ...+||+|++...-..+ ...++..+. .++|++.+++..
T Consensus 291 ~~~~-~~-~~~~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 291 AKFA-TA-QMSAPELVLVNPPRRGI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred HHHH-Hh-cCCCCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 6532 11 12469999998875422 234445554 478988777753
No 175
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.53 E-value=8.3e-07 Score=84.74 Aligned_cols=105 Identities=25% Similarity=0.418 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCCh--hHHHH-hcccCCC---CCcEEEEEeCCHHHHHHHHhhc-C---------------------C--
Q psy11646 33 DNESVLDVGCGPGN--VTSKL-LLPNLPK---SVVKLVGLDVSPNMIKHAKNHH-T---------------------N-- 82 (433)
Q Consensus 33 ~~~~VLDIGcG~G~--~~~~~-l~~~~~~---~~~~v~gvDiS~~~l~~A~~~~-~---------------------~-- 82 (433)
...+|+-.||+||. ++..+ +....+. ...+++|+|||..+++.|+.-. . .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999994 33333 3333332 2368999999999999996543 1 0
Q ss_pred --------CCeEEEEecccCCcccccccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646 83 --------PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 83 --------~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~ 140 (433)
..|.|.+.|+...+. ..+.||+|+|-+++-++. .+.++++.++..|+|||.|++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 136677777766542 237899999999998885 4678999999999999999884
No 176
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.53 E-value=2.6e-07 Score=83.73 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCCC-CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc
Q psy11646 20 KLLSQYIDQFKWTD-NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE 98 (433)
Q Consensus 20 ~ll~~l~~~l~~~~-~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~ 98 (433)
.-++.+++.+...| +..|.|+|||.+.++ ..+. .. .+|...|+-+. +-.+..+|+...|++
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la-~~~~----~~-~~V~SfDLva~------------n~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLA-KAVP----NK-HKVHSFDLVAP------------NPRVTACDIANVPLE 119 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHH-HH------S----EEEEESS-S------------STTEEES-TTS-S--
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHH-Hhcc----cC-ceEEEeeccCC------------CCCEEEecCccCcCC
Confidence 34455555555444 578999999999887 3332 32 57999998652 234678999998887
Q ss_pred ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
+ ++.|+++.+.+|... |....+++..|+|||||.+.+++..
T Consensus 120 ~---~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 120 D---ESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp T---T-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred C---CceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEec
Confidence 6 999999999888764 7888999999999999999998754
No 177
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.52 E-value=9.8e-07 Score=83.56 Aligned_cols=116 Identities=15% Similarity=0.209 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEec
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVAN 91 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~D 91 (433)
+...++|..+++.. +..+|||||+++|..+..+ +...+.. .+++.+|.+++..+.|++.+ ...+|+++.+|
T Consensus 65 ~~~g~lL~~l~~~~---~ak~iLEiGT~~GySal~l-a~al~~~-g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~ 139 (247)
T PLN02589 65 ADEGQFLNMLLKLI---NAKNTMEIGVYTGYSLLAT-ALALPED-GKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEEeChhhHHHHHH-HhhCCCC-CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc
Confidence 34456666666553 4569999999999998544 4444443 49999999999999999988 24789999999
Q ss_pred ccCCcccccc-----cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 92 IADQNLESIF-----LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 92 i~~~~l~~~~-----~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+.+. ++... .++||+|+.-.- -......+..+.++|+|||.+++-
T Consensus 140 a~e~-L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 140 ALPV-LDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHH-HHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 7653 33211 268999998543 123456677788999999997763
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.48 E-value=5.7e-07 Score=87.54 Aligned_cols=89 Identities=21% Similarity=0.398 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCC
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQ 95 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~ 95 (433)
.++..+++.+...++.+|||||||+|.++..++. . + .+++++|+++.|++.+++++. ..+++++.+|+...
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~-~---~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQ-L---A-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHH-h---C-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 4555666666777889999999999999955544 2 2 489999999999999998871 46799999999765
Q ss_pred cccccccCcEeEEEEcccccchh
Q psy11646 96 NLESIFLAKFNKIFSFYCLHWVQ 118 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~~~ 118 (433)
.+ ..||+|+++..++...
T Consensus 98 ~~-----~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 98 EF-----PYFDVCVANVPYQISS 115 (294)
T ss_pred cc-----cccCEEEecCCcccCc
Confidence 43 4689999988877653
No 179
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=2.2e-06 Score=80.16 Aligned_cols=108 Identities=24% Similarity=0.371 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHH-HHhhcCCCCeE-EEEecccC
Q psy11646 18 AAKLLSQYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH-AKNHHTNPKLE-FVVANIAD 94 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~-A~~~~~~~~i~-~~~~Di~~ 94 (433)
....+..+++.+... ++.+|||+|||+|.++. .+++. +..+|+|+|+++.|+.. .++. +++. +...|+..
T Consensus 59 ~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~-~l~~~---ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~ 131 (228)
T TIGR00478 59 GGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTD-CALQK---GAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRY 131 (228)
T ss_pred hHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHH-HHHHc---CCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCccc
Confidence 344455667766653 67899999999999994 44432 23589999999988876 3332 3432 44445553
Q ss_pred Cccccc--ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 95 QNLESI--FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 95 ~~l~~~--~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
....+. .-..+|+++++..+ .+..+.++|+| |.+++..
T Consensus 132 ~~~~~~~~d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 132 VTPADIFPDFATFDVSFISLIS--------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCHhHcCCCceeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEc
Confidence 221111 11467877765443 47789999999 8777654
No 180
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.45 E-value=1.8e-06 Score=83.38 Aligned_cols=132 Identities=19% Similarity=0.227 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEE--EEe
Q psy11646 14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEF--VVA 90 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~--~~~ 90 (433)
......++|.++...+....+.+|||+|||+|..+ ..+...++ ...+++++|.|+.|++.++... ....... ...
T Consensus 14 ~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~-wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~ 91 (274)
T PF09243_consen 14 TYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTAL-WAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRR 91 (274)
T ss_pred HHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHH-HHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhh
Confidence 33466788888888776556779999999999877 55566666 4468999999999999998876 1111110 011
Q ss_pred cccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE 152 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~ 152 (433)
.......+ ....|+|++.++|..+++ ...+++++.+.+.+ .|++++++....+....
T Consensus 92 ~~~~~~~~---~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~ 150 (274)
T PF09243_consen 92 VLYRDFLP---FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIA 150 (274)
T ss_pred hhhccccc---CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHH
Confidence 11110011 123499999999988865 44567777777765 88888877655444443
No 181
>KOG1500|consensus
Probab=98.45 E-value=1.1e-06 Score=84.25 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=78.1
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLES 99 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~ 99 (433)
.+++...-..+..|||+|||+|.++ .+++. .|..+|++++-| +|.+.|++.. ...+|.++.+.+++..+|
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS-~FAaq---AGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP- 241 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILS-FFAAQ---AGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP- 241 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHH-HHHHH---hCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-
Confidence 3444443346788999999999998 44443 233589999977 6999999887 236888999999887777
Q ss_pred cccCcEeEEEEccccc--chhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 100 IFLAKFNKIFSFYCLH--WVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~--~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
++.|+||+-..=. .-+..-...-..++.|+|.|.++-+
T Consensus 242 ---Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 242 ---EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred ---hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 7999999854322 2233334455667999999998754
No 182
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.42 E-value=2.5e-06 Score=88.05 Aligned_cols=113 Identities=18% Similarity=0.259 Sum_probs=81.9
Q ss_pred CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEe
Q psy11646 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFN 106 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD 106 (433)
...++.+|||++||+|.-+..+++ ..... ..+++.|+++..++..++++ +..++.+...|.... .....+.||
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~-~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~--~~~~~~~fD 185 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAA-LMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF--GAALPETFD 185 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHH-HcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh--hhhchhhcC
Confidence 457899999999999999955544 44333 38999999999999998887 456777777787643 222236799
Q ss_pred EEEEccc------cc--------ch--------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 107 KIFSFYC------LH--------WV--------QDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 107 ~Vis~~~------l~--------~~--------~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
.|+.-.. +. |. .-+...+.++.++|||||+|+.++.+..+
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 9995221 11 11 11356789999999999999988776555
No 183
>KOG1499|consensus
Probab=98.42 E-value=1.2e-06 Score=85.07 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=74.1
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
-.+..|||+|||+|.++ .+.++. |..+|+++|.|. +++.|++.. ....++++++.+++..+|. ++.|+
T Consensus 59 f~dK~VlDVGcGtGILS-~F~akA---GA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~---eKVDi 130 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILS-MFAAKA---GARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPV---EKVDI 130 (346)
T ss_pred cCCCEEEEcCCCccHHH-HHHHHh---CcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCc---cceeE
Confidence 46889999999999998 555543 335899999886 448888876 2345889999998876663 89999
Q ss_pred EEEcccccch--h-hHHHHHHHHHHhccCCCEEEE
Q psy11646 108 IFSFYCLHWV--Q-DQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 108 Vis~~~l~~~--~-d~~~~l~~i~~~LkpGG~lll 139 (433)
|+|-+.=+++ + -...++-.--+.|+|||.++=
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 9996654433 2 245555556689999998763
No 184
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.41 E-value=1.7e-06 Score=78.91 Aligned_cols=118 Identities=11% Similarity=0.000 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecc
Q psy11646 18 AAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANI 92 (433)
Q Consensus 18 ~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di 92 (433)
...+.+.+...+.. -.+.+|||++||+|.++..++. .+..+++++|.++.+++.+++++ . ..+++++..|+
T Consensus 33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~s----rga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALS----RGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 33444444444321 2578999999999999966655 33248999999999999999987 2 24688999998
Q ss_pred cCCccccc-cc-CcEeEEEEcccccchhhHHHHHHHH--HHhccCCCEEEEEe
Q psy11646 93 ADQNLESI-FL-AKFNKIFSFYCLHWVQDQRQAISNI--YNLLMPGGEVLLLL 141 (433)
Q Consensus 93 ~~~~l~~~-~~-~~fD~Vis~~~l~~~~d~~~~l~~i--~~~LkpGG~lll~~ 141 (433)
... +... .. ..||+|+.-..+.. .....++..+ ..+|+++|.+++-.
T Consensus 109 ~~~-l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 109 LRA-LKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHH-HHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 543 2211 11 24788888776643 2233334333 34788898777643
No 185
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.39 E-value=3.1e-06 Score=86.97 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=68.6
Q ss_pred CCEEEEECCCCChhHHHHhcccC-CCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNL-PKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~-~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
+..|||||||+|-++...+.... ..+..+|++++-++.+....+++. ...+|+++.+|+++..++ +++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 56899999999999844433210 011259999999998887765542 347899999999998766 699999
Q ss_pred EEcc--cccchhhHHHHHHHHHHhccCCCEEE
Q psy11646 109 FSFY--CLHWVQDQRQAISNIYNLLMPGGEVL 138 (433)
Q Consensus 109 is~~--~l~~~~d~~~~l~~i~~~LkpGG~ll 138 (433)
+|=. .+-.-+-....+....+.|||||.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9832 22221234456888899999999765
No 186
>KOG1661|consensus
Probab=98.39 E-value=1.5e-06 Score=78.39 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=76.8
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C-----------CCCeEEEEecccCCcc
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T-----------NPKLEFVVANIADQNL 97 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~-----------~~~i~~~~~Di~~~~l 97 (433)
+.||.+.||+|+|+|.++ ..++......+...+|+|.-++.++.+++++ . ..++.+.++|.....-
T Consensus 80 L~pG~s~LdvGsGSGYLt-~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLT-ACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHH-HHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 378999999999999999 5666554444345699999999999999987 1 2457788888776543
Q ss_pred cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+. .+||.|.+.... ...-+++.+.|+|||.+++..
T Consensus 159 e~---a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 159 EQ---APYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cc---CCcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 33 789999997543 334567788999999998854
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.39 E-value=4.3e-06 Score=71.23 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=71.9
Q ss_pred HHHHhcCCCCCCEEEEECCCCCh-hHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGN-VTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~-~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
.+.+.+....+.+|||||||+|. .+ ..|++ .+ .+|+++|+++.+++.|+++ .+++.+.|+.+..+. .-
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA-~~L~~---~G-~~ViaIDi~~~aV~~a~~~----~~~~v~dDlf~p~~~--~y 75 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVA-KKLKE---SG-FDVIVIDINEKAVEKAKKL----GLNAFVDDLFNPNLE--IY 75 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHH-HHHHH---CC-CEEEEEECCHHHHHHHHHh----CCeEEECcCCCCCHH--HH
Confidence 34444444567899999999996 55 55552 23 6999999999999999886 578899999764332 23
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
+.+|+|.+...= ++....+.++.+.. |.-+++..++..
T Consensus 76 ~~a~liysirpp---~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 76 KNAKLIYSIRPP---RDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred hcCCEEEEeCCC---HHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 678999987662 23344455555443 455666554433
No 188
>KOG3045|consensus
Probab=98.38 E-value=7.7e-07 Score=82.51 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCCC-CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc
Q psy11646 18 AAKLLSQYIDQFKWTD-NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~~-~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~ 96 (433)
...-++.+++.+...+ ...|.|+|||-+.++. .....|+..|+-+ .+-+++.+|+...|
T Consensus 164 P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~--------~~~~kV~SfDL~a------------~~~~V~~cDm~~vP 223 (325)
T KOG3045|consen 164 PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS--------SERHKVHSFDLVA------------VNERVIACDMRNVP 223 (325)
T ss_pred CCChHHHHHHHHHhCcCceEEEecccchhhhhh--------ccccceeeeeeec------------CCCceeeccccCCc
Confidence 3445666777776655 5678999999988762 1114789998754 24567889999988
Q ss_pred ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 97 l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
+++ ++.|+++.+.+|.. .|+...+++++|+|++||.+.+++..
T Consensus 224 l~d---~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 224 LED---ESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred Ccc---CcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehh
Confidence 876 99999998887765 37888999999999999999998643
No 189
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.34 E-value=4.2e-06 Score=83.96 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=80.9
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEecccCCcccc--cccCcEe
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVANIADQNLES--IFLAKFN 106 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~Di~~~~l~~--~~~~~fD 106 (433)
|.+||++-|=||.++..++. .|..++|++|.|..+++.|++++ ...++.|+++|+-+. +.. ....+||
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~----gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~-l~~~~~~g~~fD 292 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAAL----GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW-LRKAERRGEKFD 292 (393)
T ss_pred CCeEEEecccCcHHHHHHHh----cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH-HHHHHhcCCccc
Confidence 89999999999999954443 33349999999999999999998 235678999998764 332 2235899
Q ss_pred EEEEcccc---------cchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 107 KIFSFYCL---------HWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 107 ~Vis~~~l---------~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
+|+.-.+- .-..+....+..+.++|+|||.+++.....
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99984432 122456778899999999999998876443
No 190
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.33 E-value=8.7e-07 Score=80.32 Aligned_cols=105 Identities=19% Similarity=0.170 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCccccc--ccCcEe
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESI--FLAKFN 106 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~--~~~~fD 106 (433)
++.++||+-||+|.++.+++. +|..+++.+|.++.++...++++ . ..+++++..|.... +... ...+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALS----RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~-l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALS----RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF-LLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHH----TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH-HHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHh----cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH-HHhhcccCCCce
Confidence 688999999999999988876 45569999999999999999998 2 23588888886543 2221 348899
Q ss_pred EEEEcccccchhhHHHHHHHHH--HhccCCCEEEEEec
Q psy11646 107 KIFSFYCLHWVQDQRQAISNIY--NLLMPGGEVLLLLN 142 (433)
Q Consensus 107 ~Vis~~~l~~~~d~~~~l~~i~--~~LkpGG~lll~~~ 142 (433)
+|++-.+...-.....++..+. .+|+++|.+++-..
T Consensus 117 iIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 117 IIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 9999888765432366666666 89999998887543
No 191
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.27 E-value=3.1e-06 Score=82.05 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-CCCeEEEEecccCCcccc
Q psy11646 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-NPKLEFVVANIADQNLES 99 (433)
Q Consensus 21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-~~~i~~~~~Di~~~~l~~ 99 (433)
++.++++.+...++..+||.+||.|..+..++. ..+.. .+|+|+|.++.|++.|++++. ..++++++.|..+.....
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~-~~~~~-g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILE-RLGPK-GRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHH-hCCCC-CEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 456777777778889999999999999955554 44422 499999999999999998873 257999999987642110
Q ss_pred cc-cCcEeEEEEccccc
Q psy11646 100 IF-LAKFNKIFSFYCLH 115 (433)
Q Consensus 100 ~~-~~~fD~Vis~~~l~ 115 (433)
.. ..++|.|++...+.
T Consensus 85 ~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 85 AEGLGKVDGILLDLGVS 101 (296)
T ss_pred HcCCCccCEEEECCCcc
Confidence 01 12799999866543
No 192
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.27 E-value=8.6e-06 Score=78.62 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEe
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVA 90 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~ 90 (433)
+..+..+..+ ..+.+|||+=|=||.++...++ .+..+|+.+|.|..+++.|++++ ...+++|++.
T Consensus 112 R~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~----gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~ 181 (286)
T PF10672_consen 112 RENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAA----GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQG 181 (286)
T ss_dssp HHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHH----TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES
T ss_pred HhhHHHHHHH------cCCCceEEecCCCCHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec
Confidence 3445554443 3478999999999999955443 34358999999999999999998 2357899999
Q ss_pred cccCCcccc-cccCcEeEEEEccccc------chhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 91 NIADQNLES-IFLAKFNKIFSFYCLH------WVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 91 Di~~~~l~~-~~~~~fD~Vis~~~l~------~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
|+.+. +.. ...++||+|++-.+-. -..+....+..+.++|+|||.++.....
T Consensus 182 Dvf~~-l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 182 DVFKF-LKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -HHHH-HHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CHHHH-HHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 98653 222 2247899999854321 1235677889999999999998876544
No 193
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.26 E-value=6.8e-07 Score=90.60 Aligned_cols=112 Identities=20% Similarity=0.350 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCC--C-CC-CEEEEECCCCChhHHHHhcccCCCCCcEEEEE-----eCCHHHHHHHHhhcCCCCeEEE
Q psy11646 18 AAKLLSQYIDQFKW--T-DN-ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGL-----DVSPNMIKHAKNHHTNPKLEFV 88 (433)
Q Consensus 18 ~~~ll~~l~~~l~~--~-~~-~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gv-----DiS~~~l~~A~~~~~~~~i~~~ 88 (433)
+...++.+.+.+.. . .+ ..+||+|||.|+++..++. . .|+.+ |..+..++.|.++- +-..
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~----r---~V~t~s~a~~d~~~~qvqfaleRG----vpa~ 166 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLE----R---NVTTMSFAPNDEHEAQVQFALERG----VPAM 166 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhh----C---CceEEEcccccCCchhhhhhhhcC----cchh
Confidence 33444444444433 2 22 2589999999999955543 2 23333 45556777777663 3322
Q ss_pred Eecc--cCCcccccccCcEeEEEEccccc-chhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 89 VANI--ADQNLESIFLAKFNKIFSFYCLH-WVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 89 ~~Di--~~~~l~~~~~~~fD~Vis~~~l~-~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
.+-+ ..+|+++ +.||+|.|..++. |..+-...|-++.|+|||||+++++.+.
T Consensus 167 ~~~~~s~rLPfp~---~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 167 IGVLGSQRLPFPS---NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhhhccccccCCc---cchhhhhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence 2222 3445554 9999999999875 4455566789999999999999987543
No 194
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.5e-05 Score=72.70 Aligned_cols=125 Identities=22% Similarity=0.305 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC
Q psy11646 17 DAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ 95 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~ 95 (433)
.+...|.++.++... +++.+|+|+|+.+|+|+ ..+++....+ ..|+|+|+.|-- ..+++.++++|++..
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWs-Qva~~~~~~~-~~ivavDi~p~~--------~~~~V~~iq~d~~~~ 97 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWS-QVAAKKLGAG-GKIVAVDILPMK--------PIPGVIFLQGDITDE 97 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHH-HHHHHHhCCC-CcEEEEECcccc--------cCCCceEEeeeccCc
Confidence 444555567777764 57899999999999999 6666555544 369999998742 236799999999876
Q ss_pred cccc-----cccCcEeEEEEccc--------ccchhh---HHHHHHHHHHhccCCCEEEEEeccCCchhhHH
Q psy11646 96 NLES-----IFLAKFNKIFSFYC--------LHWVQD---QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLY 151 (433)
Q Consensus 96 ~l~~-----~~~~~fD~Vis~~~--------l~~~~d---~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~ 151 (433)
...+ .....+|+|+|-.+ .+|... ...++.-...+|+|||.+++-..-.....+.+
T Consensus 98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l 169 (205)
T COG0293 98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLL 169 (205)
T ss_pred cHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHH
Confidence 5332 12244799997332 233321 34567778889999999998765444433333
No 195
>PLN02823 spermine synthase
Probab=98.24 E-value=8.6e-06 Score=80.65 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=75.7
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-------CCCeEEEEecccCCcccccccCc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-------NPKLEFVVANIADQNLESIFLAK 104 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-------~~~i~~~~~Di~~~~l~~~~~~~ 104 (433)
+.+.+||.||+|.|..+..+++. .+. .+++.+|+++.+++.|++.+. .++++++..|.... +. ...++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~-~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-L~-~~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRH-KTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-LE-KRDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhC-CCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-Hh-hCCCC
Confidence 35679999999999998656652 222 489999999999999999871 47899999998764 22 23478
Q ss_pred EeEEEEcccccc--h-h-h--HHHHHH-HHHHhccCCCEEEEE
Q psy11646 105 FNKIFSFYCLHW--V-Q-D--QRQAIS-NIYNLLMPGGEVLLL 140 (433)
Q Consensus 105 fD~Vis~~~l~~--~-~-d--~~~~l~-~i~~~LkpGG~lll~ 140 (433)
||+|++-..=.. . . . ...+++ .+.+.|+|||.+++.
T Consensus 177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 999998632100 0 0 0 235676 889999999987764
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=9e-06 Score=76.98 Aligned_cols=91 Identities=13% Similarity=0.283 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCccc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLE 98 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~ 98 (433)
.+++.+++.....++..|||||+|.|.+|..++. .+ .+|+++++++.+++..+++. ...+++++.+|+....++
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~----~~-~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLE----RA-ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh----hc-CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 4577778888778899999999999999955554 22 58999999999999999998 468999999999887766
Q ss_pred ccccCcEeEEEEcccccch
Q psy11646 99 SIFLAKFNKIFSFYCLHWV 117 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~ 117 (433)
... .++.|+++-..+-.
T Consensus 92 ~l~--~~~~vVaNlPY~Is 108 (259)
T COG0030 92 SLA--QPYKVVANLPYNIS 108 (259)
T ss_pred hhc--CCCEEEEcCCCccc
Confidence 311 68999999887654
No 197
>KOG3420|consensus
Probab=98.21 E-value=3.6e-06 Score=71.45 Aligned_cols=93 Identities=16% Similarity=0.290 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccC
Q psy11646 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIAD 94 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~ 94 (433)
-+...+.-+-+.+.--.|.+++|+|||.|-++.. ...... ..++|+||.|++++.+++++ ..-++.+.++|+.+
T Consensus 32 iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a--~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild 107 (185)
T KOG3420|consen 32 IAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIA--FSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD 107 (185)
T ss_pred HHHHHHHHHHhhhccccCcchhhhcCchhhhHHH--hhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc
Confidence 3445555555555545789999999999998722 222223 48999999999999999998 34567899999988
Q ss_pred CcccccccCcEeEEEEcccccc
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHW 116 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~ 116 (433)
..+.. +.||.++.+..+..
T Consensus 108 le~~~---g~fDtaviNppFGT 126 (185)
T KOG3420|consen 108 LELKG---GIFDTAVINPPFGT 126 (185)
T ss_pred hhccC---CeEeeEEecCCCCc
Confidence 65443 89999999988753
No 198
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.21 E-value=1.1e-05 Score=72.97 Aligned_cols=106 Identities=20% Similarity=0.367 Sum_probs=70.0
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCC-------CcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKS-------VVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANI 92 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~-------~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di 92 (433)
.++....++++..|||--||+|.+..+.+... ... ..+++|.|+++.+++.|++++ ....+.+.+.|+
T Consensus 19 ~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAGWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhCCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 44555567889999999999999986553322 111 014899999999999999998 234688999999
Q ss_pred cCCcccccccCcEeEEEEcccccch-h---h----HHHHHHHHHHhccC
Q psy11646 93 ADQNLESIFLAKFNKIFSFYCLHWV-Q---D----QRQAISNIYNLLMP 133 (433)
Q Consensus 93 ~~~~l~~~~~~~fD~Vis~~~l~~~-~---d----~~~~l~~i~~~Lkp 133 (433)
...++.+ +++|.|+++..+-.- . + ...+++++.+++++
T Consensus 98 ~~l~~~~---~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 98 RELPLPD---GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGTT---SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred hhccccc---CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 8876333 799999999877532 1 1 23567888888888
No 199
>KOG0820|consensus
Probab=98.20 E-value=7.7e-06 Score=76.63 Aligned_cols=87 Identities=24% Similarity=0.415 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C---CCCeEEEEecccCC
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T---NPKLEFVVANIADQ 95 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~---~~~i~~~~~Di~~~ 95 (433)
.+++.++.....++++.|||||.|||.+|..++. .+ .+|+++++++.|+....++. + ....++.++|+...
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe----~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE----AG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH----hc-CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 5677888888889999999999999999977775 23 69999999999999999998 2 35789999998876
Q ss_pred cccccccCcEeEEEEcccccc
Q psy11646 96 NLESIFLAKFNKIFSFYCLHW 116 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~ 116 (433)
+++ .||.++++....-
T Consensus 120 d~P-----~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 120 DLP-----RFDGCVSNLPYQI 135 (315)
T ss_pred CCc-----ccceeeccCCccc
Confidence 554 6999999776543
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.20 E-value=9.5e-06 Score=81.58 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=78.0
Q ss_pred hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEE
Q psy11646 13 MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVV 89 (433)
Q Consensus 13 ~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~ 89 (433)
.....++.+++.+.+.+... +.+|||++||+|.++. .+++. ..+|+|+|+++.+++.|++++ +..++++..
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl-~la~~----~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~ 260 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTL-ALARN----FRRVLATEISKPSVAAAQYNIAANGIDNVQIIR 260 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHH-HHHhh----CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33445566666666655422 3579999999999995 55432 248999999999999999987 335799999
Q ss_pred ecccCCcccccc--------------cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 90 ANIADQNLESIF--------------LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 90 ~Di~~~~l~~~~--------------~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|+.+. ++... ..+||+|+.-..-..+ ...+++.+.+ |++.++++.
T Consensus 261 ~d~~~~-l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 261 MSAEEF-TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCHHHH-HHHHhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEEEe
Confidence 998663 22110 1258999997774221 2444455443 677766653
No 201
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.19 E-value=2.8e-06 Score=77.85 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=82.5
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-----CCCCeEEEEecccCCccccccc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-----TNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-----~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
..+.+.|.+|||.+.|-|..++..++ .+..+|+.++.+|..++.|+-+- ...+++++.+|+.+. ..++.+
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~----rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~-V~~~~D 203 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALE----RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV-VKDFDD 203 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHH----cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH-HhcCCc
Confidence 34445699999999999999877665 45359999999999999998775 224688999998764 455667
Q ss_pred CcEeEEEEcccccch-hh--HHHHHHHHHHhccCCCEEEEEe
Q psy11646 103 AKFNKIFSFYCLHWV-QD--QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~-~d--~~~~l~~i~~~LkpGG~lll~~ 141 (433)
++||.|+--..=... .. -+.+.++++|+|||||.++--.
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 999999864332111 11 3678999999999999988654
No 202
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.18 E-value=9.1e-06 Score=82.02 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
++.+|||++||+|..+..++... +. .+|+++|+++.+++.+++++ ...++++...|+... +.. .++||+|+
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~-~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-l~~--~~~fD~V~ 130 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALET-GV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL-LHE--ERKFDVVD 130 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHC-CC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-Hhh--cCCCCEEE
Confidence 35689999999999996665432 22 48999999999999999987 334567888888653 221 26799999
Q ss_pred EcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+... .....++....+.+++||.+.++
T Consensus 131 lDP~----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 131 IDPF----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ECCC----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 9653 33456777767888999999987
No 203
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.18 E-value=1.7e-05 Score=77.63 Aligned_cols=111 Identities=18% Similarity=0.270 Sum_probs=83.4
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe-cccCCcccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA-NIADQNLES 99 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~-Di~~~~l~~ 99 (433)
.+.+....++|..|||-=||||+++..+-. - +.+++|+|++..|++-|+.++ ......+... |+...+++.
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl----~-G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGL----M-GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhh----c-CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC
Confidence 344444557899999999999999844322 2 269999999999999999998 2345555555 998887665
Q ss_pred cccCcEeEEEEcccccch--------hh-HHHHHHHHHHhccCCCEEEEEec
Q psy11646 100 IFLAKFNKIFSFYCLHWV--------QD-QRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~--------~d-~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
.++|.|++-...--. .+ ..+++..+.++|++||++++..+
T Consensus 263 ---~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 263 ---NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ---CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 579999985544211 12 46789999999999999998765
No 204
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.16 E-value=1.6e-05 Score=76.60 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=77.6
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C----CCCeEEEEecccCCcccccccCcEe
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T----NPKLEFVVANIADQNLESIFLAKFN 106 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~----~~~i~~~~~Di~~~~l~~~~~~~fD 106 (433)
..+||-||-|.|..++.+++ ..+- .+++.+||.+..++.|++.+ . +++++++..|.... +... .++||
T Consensus 77 pk~VLiiGgGdG~tlRevlk-h~~v--e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-v~~~-~~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLK-HLPV--ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-LRDC-EEKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHh-cCCc--ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH-HHhC-CCcCC
Confidence 36999999999999966655 3332 48999999999999999988 2 47889999997654 3322 24899
Q ss_pred EEEEcccccc--hh--hHHHHHHHHHHhccCCCEEEEE
Q psy11646 107 KIFSFYCLHW--VQ--DQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 107 ~Vis~~~l~~--~~--d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+|++-..=.- .+ -...+++.+++.|+++|.++..
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9998554321 01 1367899999999999998875
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.16 E-value=1.2e-05 Score=80.48 Aligned_cols=115 Identities=11% Similarity=0.114 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEec
Q psy11646 15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVAN 91 (433)
Q Consensus 15 ~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~D 91 (433)
...+..+++.+.+.+... +.+|||+|||+|.++. .+++. ..+|+|+|+++.+++.|++++ +..+++++.+|
T Consensus 180 ~~~~~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl-~la~~----~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d 253 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGS-KGDLLELYCGNGNFSL-ALAQN----FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMS 253 (353)
T ss_pred HHHHHHHHHHHHHHhhcC-CCcEEEEeccccHHHH-HHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcC
Confidence 344556666666655422 3479999999999995 55532 248999999999999999988 33578999999
Q ss_pred ccCCccccc-----c---------cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 92 IADQNLESI-----F---------LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 92 i~~~~l~~~-----~---------~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+.+. ++.. . ...||+|+.-..-.. -...++..+. +|++.+++..
T Consensus 254 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G--~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 254 AEEF-TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG--LDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHH-HHHHhhccccccccccccccCCCCEEEECCCCCC--CcHHHHHHHH---cCCcEEEEEc
Confidence 8763 2210 0 123799998776221 1234444443 3777777653
No 206
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.14 E-value=1e-05 Score=84.74 Aligned_cols=105 Identities=13% Similarity=0.258 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
.+..+||||||.|.++ ..++...|.. .++|+|++...+..|.++. +..|+.+...|+... ...+.++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~-~~~A~~~p~~--~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~-~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHF-INQAKMNPDA--LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLI-LNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHH-HHHHHhCCCC--CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHhcCcccccEEE
Confidence 3567999999999999 5556666765 8999999999888877765 446788887776432 1113448899999
Q ss_pred Ecccccchhh--------HHHHHHHHHHhccCCCEEEEEe
Q psy11646 110 SFYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 110 s~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.++.=-|... ....+..+.++|+|||.+.+.+
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9988766532 3578999999999999999875
No 207
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.09 E-value=1.3e-05 Score=73.76 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc------------CCCCeEE
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH------------TNPKLEF 87 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~------------~~~~i~~ 87 (433)
..+..+++.++..++...+|||||.|.....+.. .. +..+.+|+++.+...+.|+... ...++++
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal-~~--~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAAL-QT--GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHH-HH----SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHH-Hc--CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 4455667777788899999999999998743332 22 2247999999999888776432 1346778
Q ss_pred EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646 88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
..+|+.+.......-...|+|++++.... ++....+.+....||+|.+++-
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eccCccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 88887654332222245799999987643 3455667788888998887654
No 208
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.09 E-value=1.9e-05 Score=74.85 Aligned_cols=119 Identities=24% Similarity=0.356 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCC--CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC--------------
Q psy11646 20 KLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN-------------- 82 (433)
Q Consensus 20 ~ll~~l~~~l~~--~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~-------------- 82 (433)
..+..+.+.+.. ..|.++||||||+--+- .+.+ . +.+.+++..|.++...+..++-. ..
T Consensus 41 ~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~-~lsa--~-~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~ 116 (256)
T PF01234_consen 41 FFLKNLHETFSSGGVKGETLLDIGSGPTIYQ-LLSA--C-EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCE 116 (256)
T ss_dssp HHHHHHHHHHHTSSS-EEEEEEES-TT--GG-GTTG--G-GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHH
T ss_pred HHHHHHHHHhCccCcCCCEEEEeCCCcHHHh-hhhH--H-HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHh
Confidence 344444444432 24779999999996553 2211 1 22357999999998887655433 10
Q ss_pred ----------------CCe-EEEEecccCCccccc---ccCcEeEEEEcccccch----hhHHHHHHHHHHhccCCCEEE
Q psy11646 83 ----------------PKL-EFVVANIADQNLESI---FLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVL 138 (433)
Q Consensus 83 ----------------~~i-~~~~~Di~~~~l~~~---~~~~fD~Vis~~~l~~~----~d~~~~l~~i~~~LkpGG~ll 138 (433)
..| .++..|+.+.+.-.. ...+||+|++..+++.. +....+++++.++|||||.|+
T Consensus 117 lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 117 LEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp HTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 013 367788876532211 22469999999999866 345788999999999999999
Q ss_pred EEec
Q psy11646 139 LLLN 142 (433)
Q Consensus 139 l~~~ 142 (433)
+...
T Consensus 197 l~~~ 200 (256)
T PF01234_consen 197 LAGV 200 (256)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9753
No 209
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.08 E-value=4.5e-05 Score=69.08 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=71.6
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
+++|||+|.|--+ ..++-..|.. +++.+|....-+...+.-. +-.++++....+++. .. ..+||+|++-.
T Consensus 51 ~~lDiGSGaGfPG-ipLaI~~p~~--~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-~~---~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPG-IPLAIARPDL--QVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP-EY---RESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTH-HHHHHH-TTS--EEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-TT---TT-EEEEEEES
T ss_pred eEEecCCCCCChh-HHHHHhCCCC--cEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-cc---CCCccEEEeeh
Confidence 8999999999888 4445455664 8999999998877766554 667899999999872 22 28899999977
Q ss_pred cccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 113 CLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+- .....+.-+..++++||.+++.
T Consensus 124 v~----~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 VA----PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS----SHHHHHHHHGGGEEEEEEEEEE
T ss_pred hc----CHHHHHHHHHHhcCCCCEEEEE
Confidence 63 4567888899999999998875
No 210
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=3.9e-05 Score=76.87 Aligned_cols=119 Identities=22% Similarity=0.281 Sum_probs=83.2
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccC
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLA 103 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~ 103 (433)
..+...+|.+|||+++++|.-|.. ++.+..+.+..|+++|+++.-++..+++. +..++.....|....+-.....+
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTth-la~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTH-LAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHH-HHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 345567899999999999999944 44454442356799999999999888887 55667777777654321111123
Q ss_pred cEeEEEEc------cccc------ch----------hhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 104 KFNKIFSF------YCLH------WV----------QDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 104 ~fD~Vis~------~~l~------~~----------~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
+||.|+.- ++++ |. .-+...+....++|||||.|+.++.+..+
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 69999972 2221 11 11456799999999999999998766554
No 211
>KOG1331|consensus
Probab=98.05 E-value=4.7e-06 Score=78.80 Aligned_cols=98 Identities=23% Similarity=0.437 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
.+..++|+|||.|..+. . . |. ..++|.|++...+..|++.- ......+|+...+..+ .+||.+++..
T Consensus 45 ~gsv~~d~gCGngky~~-~-~---p~--~~~ig~D~c~~l~~~ak~~~---~~~~~~ad~l~~p~~~---~s~d~~lsia 111 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-V-N---PL--CLIIGCDLCTGLLGGAKRSG---GDNVCRADALKLPFRE---ESFDAALSIA 111 (293)
T ss_pred CcceeeecccCCcccCc-C-C---Cc--ceeeecchhhhhccccccCC---CceeehhhhhcCCCCC---Cccccchhhh
Confidence 47889999999998871 1 1 22 37899999999999888752 2257788988877776 8999999999
Q ss_pred cccchh---hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 113 CLHWVQ---DQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 113 ~l~~~~---d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
++||+. ....+++++.+.|+|||..++...+
T Consensus 112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 999995 3568999999999999998876543
No 212
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.03 E-value=7.9e-05 Score=63.21 Aligned_cols=103 Identities=31% Similarity=0.550 Sum_probs=70.8
Q ss_pred EEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCC---eEEEEecccC--CcccccccCcEeEEEEc
Q psy11646 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPK---LEFVVANIAD--QNLESIFLAKFNKIFSF 111 (433)
Q Consensus 37 VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~---i~~~~~Di~~--~~l~~~~~~~fD~Vis~ 111 (433)
++|+|||+|..+ .+....... ..++|+|+++.++..++....... +.+...|... .++.. ...||++.+.
T Consensus 52 ~ld~~~g~g~~~--~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA--LLARLGGRG-AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED--SASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH--HHHHhCCCC-ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCC--CCceeEEeee
Confidence 999999999864 222222222 478999999999998665541122 5777778765 33331 0379999444
Q ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
...++.. ....+.++.+.++|+|.+++......
T Consensus 127 ~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 127 LVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4445544 78899999999999999988765443
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=98.03 E-value=5.6e-05 Score=72.13 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=73.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCccccccc
Q psy11646 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
.++.+.+||=||.|.|..++++++. + .+|+.+||++.+++.+++.+ .+++++++.. +. +...
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh---~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~-----~~~~ 137 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY---D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL-----DLDI 137 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc---C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh-----hccC
Confidence 3466789999999999999888764 1 28999999999999999955 4577877652 11 1112
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
++||+|++-.. ......+.+++.|+|||.++..
T Consensus 138 ~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 138 KKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 68999998643 2366789999999999998864
No 214
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.02 E-value=3.6e-05 Score=73.13 Aligned_cols=106 Identities=18% Similarity=0.282 Sum_probs=75.2
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccCc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLAK 104 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~~ 104 (433)
+.+.+||=||.|.|..+..+++ ..+. .+++.+|+++..++.|++.+ .+++++++..|.... +......+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~-~~~~--~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-l~~~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLK-HPPV--ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-LKETQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTT-STT---SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-HHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhh-cCCc--ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-HHhccCCc
Confidence 4678999999999999955543 3222 48999999999999999976 147899999998653 22212128
Q ss_pred EeEEEEcccccch--hh--HHHHHHHHHHhccCCCEEEEEe
Q psy11646 105 FNKIFSFYCLHWV--QD--QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 105 fD~Vis~~~l~~~--~d--~~~~l~~i~~~LkpGG~lll~~ 141 (433)
||+|+.-..-... .. ....++.+++.|+|||.+++..
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9999984332111 11 3578999999999999998865
No 215
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.99 E-value=3.1e-05 Score=70.88 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=70.8
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL 114 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l 114 (433)
.++|||||=+....... .+...|+.||+.+. .-.+.+.|+.+.|++....++||+|.++.+|
T Consensus 53 lrlLEVGals~~N~~s~------~~~fdvt~IDLns~------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST------SGWFDVTRIDLNSQ------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCcccc------cCceeeEEeecCCC------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 69999999765543111 12257999999873 2345788998888876667899999999999
Q ss_pred cchhhH---HHHHHHHHHhccCCCE-----EEEEecc
Q psy11646 115 HWVQDQ---RQAISNIYNLLMPGGE-----VLLLLNA 143 (433)
Q Consensus 115 ~~~~d~---~~~l~~i~~~LkpGG~-----lll~~~~ 143 (433)
.+++++ ...++.+.+.|+|+|. ++++.+.
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999865 4679999999999999 8887653
No 216
>KOG2915|consensus
Probab=97.99 E-value=7.3e-05 Score=70.19 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=83.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccc
Q psy11646 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLE 98 (433)
Q Consensus 23 ~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~ 98 (433)
..++..+..+||.+|+|-|+|+|.++..+++...|.| +++-.|+-+...+.|++-+ ...++++.+-|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptG--hl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTG--HLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCc--ceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 3566777789999999999999999955555555655 9999999999988888877 357899999999876544
Q ss_pred ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEE
Q psy11646 99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVL 138 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~ll 138 (433)
. ....+|.|+. .++.+..++..++++||.+|.-+
T Consensus 173 ~-ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~ 206 (314)
T KOG2915|consen 173 I-KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRL 206 (314)
T ss_pred c-cccccceEEE-----cCCChhhhhhhhHHHhhhcCceE
Confidence 2 1367888876 44567778888899999877433
No 217
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.98 E-value=7.2e-05 Score=67.25 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCC--CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEec
Q psy11646 18 AAKLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVAN 91 (433)
Q Consensus 18 ~~~ll~~l~~~l~~--~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~D 91 (433)
..++-+.+...+.. -.|.++||+=+|+|.++.+.+. ++..+++.+|.+..++...+++. ...+.++...|
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlS----RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d 101 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALS----RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHh----CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence 33444444555544 3689999999999999987776 45569999999999999999998 23678888888
Q ss_pred ccCCccccc-ccCcEeEEEEcccccch-hhHHHHHHH--HHHhccCCCEEEEEe
Q psy11646 92 IADQNLESI-FLAKFNKIFSFYCLHWV-QDQRQAISN--IYNLLMPGGEVLLLL 141 (433)
Q Consensus 92 i~~~~l~~~-~~~~fD~Vis~~~l~~~-~d~~~~l~~--i~~~LkpGG~lll~~ 141 (433)
.... +... ..+.||+|+.-..++.- -+....+.. -..+|+|+|.+++-.
T Consensus 102 a~~~-L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 102 ALRA-LKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHH-HHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 8732 2221 12359999998888721 222333333 568899999988754
No 218
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.98 E-value=0.00014 Score=71.55 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=78.3
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCC-CCcEEEEEeCCHHHHHHHHhhcC---CCCeEE--EEecccCCc-
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPK-SVVKLVGLDVSPNMIKHAKNHHT---NPKLEF--VVANIADQN- 96 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~-~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~--~~~Di~~~~- 96 (433)
+++..+ .++..++|+|||+|.-+..+|..+.+. ....|+++|+|..+++.+.+++. .+.+++ +.+|..+.-
T Consensus 69 ~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~ 146 (319)
T TIGR03439 69 DIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA 146 (319)
T ss_pred HHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh
Confidence 444443 456789999999999986665554322 12589999999999999998873 245555 677775531
Q ss_pred -ccc-cccCcEeEEEEcc-cccchh--hHHHHHHHHHH-hccCCCEEEEEe
Q psy11646 97 -LES-IFLAKFNKIFSFY-CLHWVQ--DQRQAISNIYN-LLMPGGEVLLLL 141 (433)
Q Consensus 97 -l~~-~~~~~fD~Vis~~-~l~~~~--d~~~~l~~i~~-~LkpGG~lll~~ 141 (433)
++. .......+++..+ ++..++ +....++++++ .|+|||.+++..
T Consensus 147 ~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 147 WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 111 1113456666654 565554 34567899999 999999988864
No 219
>KOG3178|consensus
Probab=97.98 E-value=2.9e-05 Score=75.74 Aligned_cols=96 Identities=25% Similarity=0.394 Sum_probs=79.6
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL 114 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l 114 (433)
...+|+|.|.|..+..++. ..| ++-+++.....+..++..+. ++|+.+-+|.-+. .|. -|+|++-+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp----~ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~-~P~-----~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYP----HIKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQD-TPK-----GDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCC----CCceeecCHHHHHhhhhhhc-CCcceeccccccc-CCC-----cCeEEEEeec
Confidence 6789999999999966665 544 67899998888888877765 6788888888766 443 4799999999
Q ss_pred cchhh--HHHHHHHHHHhccCCCEEEEEec
Q psy11646 115 HWVQD--QRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 115 ~~~~d--~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
||+.| ..+.|+++++.|+|||.+++.+.
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 99965 56889999999999999999875
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.94 E-value=7.1e-05 Score=75.28 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=89.1
Q ss_pred hhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C
Q psy11646 5 TLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T 81 (433)
Q Consensus 5 ~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~ 81 (433)
..|+......|...--.+..+........+.+|||+.||+|..+.+++.... +..+|+++|+++.+++.++++. .
T Consensus 16 vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~--ga~~Vv~nD~n~~Av~~i~~N~~~N~ 93 (374)
T TIGR00308 16 VFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE--GVREVFANDINPKAVESIKNNVEYNS 93 (374)
T ss_pred cccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC--CCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 4555555555544444444444432222246899999999999977776421 2258999999999999999988 2
Q ss_pred CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..++++.+.|+... +.. ...+||+|..-. +. .+...+..+.+.+++||.+.++.
T Consensus 94 ~~~~~v~~~Da~~~-l~~-~~~~fDvIdlDP-fG---s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 94 VENIEVPNEDAANV-LRY-RNRKFHVIDIDP-FG---TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCcEEEEchhHHHH-HHH-hCCCCCEEEeCC-CC---CcHHHHHHHHHhcccCCEEEEEe
Confidence 34578888887654 221 125799998855 32 34567888889999999999873
No 221
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.93 E-value=0.00013 Score=67.13 Aligned_cols=108 Identities=17% Similarity=0.298 Sum_probs=72.2
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCH----HHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP----NMIKHAKNHHTNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~----~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
+.+..++|.+||-+|+++|... ..++...... ..|++++.|+ +.+..|++| +|+--+..|+.....-...-
T Consensus 67 ~~~~ik~gskVLYLGAasGTTV-SHvSDIvg~~-G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTV-SHVSDIVGPD-GVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHH-HHHHHHHTTT-SEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS
T ss_pred cccCCCCCCEEEEecccCCCcc-chhhhccCCC-CcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccc
Confidence 4455679999999999999887 4444444422 3999999999 556667776 68888888987532111233
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+..|+|++--+ ...+.+-++.|....||+||.++++.
T Consensus 142 ~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 142 EMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp --EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 68999988544 22345667899999999999999875
No 222
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.92 E-value=0.00017 Score=69.31 Aligned_cols=103 Identities=17% Similarity=0.411 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcc
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNL 97 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l 97 (433)
..+++.+++.+...++..|||||+|+|.+|..++. .. .+++++|+++.+++..++++ ..++++++.+|+.....
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~-~~----~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLK-RG----KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHH-HS----SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhc-cc----CcceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence 35566667777767899999999999999955554 22 49999999999999999988 46899999999988765
Q ss_pred cccccCcEeEEEEcccccchhhHHHHHHHHHH
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYN 129 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~ 129 (433)
..........|+++...+.. ...+.++..
T Consensus 91 ~~~~~~~~~~vv~NlPy~is---~~il~~ll~ 119 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPYNIS---SPILRKLLE 119 (262)
T ss_dssp GGHCSSSEEEEEEEETGTGH---HHHHHHHHH
T ss_pred HHhhcCCceEEEEEecccch---HHHHHHHhh
Confidence 54334567788888776332 234444444
No 223
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.92 E-value=1.4e-05 Score=77.48 Aligned_cols=115 Identities=23% Similarity=0.366 Sum_probs=80.6
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
+...++.+|||+++|+|.-+..+ +...... ..+++.|+++.-+...+++. +..++.....|..... +......|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~l-a~~~~~~-g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~-~~~~~~~f 157 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHL-AELMGNK-GEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD-PKKPESKF 157 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHH-HHHTTTT-SEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH-HHHHTTTE
T ss_pred ccccccccccccccCCCCceeee-eecccch-hHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc-cccccccc
Confidence 34578999999999999998544 4444422 49999999999999988876 5567777777766531 11222469
Q ss_pred eEEEEcc------ccc------ch----------hhHHHHHHHHHHhc----cCCCEEEEEeccCCc
Q psy11646 106 NKIFSFY------CLH------WV----------QDQRQAISNIYNLL----MPGGEVLLLLNAFNP 146 (433)
Q Consensus 106 D~Vis~~------~l~------~~----------~d~~~~l~~i~~~L----kpGG~lll~~~~~~p 146 (433)
|.|+.-. ++. |. .-+.+.+++..+.+ ||||+++.++.+..+
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 9999722 111 11 11456799999999 999999998765443
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.92 E-value=4.1e-05 Score=75.31 Aligned_cols=121 Identities=19% Similarity=0.333 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhccc------CCCCCcEEEEEeCCHHHHHHHHhhc---C--CCCeEE
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN------LPKSVVKLVGLDVSPNMIKHAKNHH---T--NPKLEF 87 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~------~~~~~~~v~gvDiS~~~l~~A~~~~---~--~~~i~~ 87 (433)
..+...+.+.+...++.+|+|-+||+|.+...+.... ... .+++|+|+++.++..|+-++ + .....+
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~--~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE--INIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC--EEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhccccccccc--ceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 3444445555555678899999999999985555421 122 48999999999999988765 1 233457
Q ss_pred EEecccCCcccccccCcEeEEEEcccccch--h-------------------hHHHHHHHHHHhccCCCEEEEEec
Q psy11646 88 VVANIADQNLESIFLAKFNKIFSFYCLHWV--Q-------------------DQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~--~-------------------d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
...|.-..+.. .....||+|+++.++-.. . .....+..+.+.|++||++.+..+
T Consensus 110 ~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 110 IQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 77775432211 113689999998766422 0 012467889999999999887764
No 225
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00021 Score=73.12 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=88.0
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEE
Q psy11646 11 NSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEF 87 (433)
Q Consensus 11 ~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~ 87 (433)
.+.....+..++....+.+...++.++||+=||.|.++ ..+++ ...+|+|+|+++++++.|++++ +..|++|
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~-l~lA~----~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f 345 (432)
T COG2265 271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFG-LPLAK----RVKKVHGVEISPEAVEAAQENAAANGIDNVEF 345 (432)
T ss_pred eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhh-hhhcc----cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEE
Confidence 34455567788888888887778899999999999999 45552 2359999999999999999998 4567999
Q ss_pred EEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 88 ~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..++.+...........+|.|+.-..=-.+. +.+++.+. .++|...++++.
T Consensus 346 ~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 346 IAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred EeCCHHHHhhhccccCCCCEEEECCCCCCCC--HHHHHHHH-hcCCCcEEEEeC
Confidence 9999887532222235789999866533332 23444444 455666666653
No 226
>KOG1709|consensus
Probab=97.84 E-value=0.00017 Score=65.52 Aligned_cols=121 Identities=17% Similarity=0.261 Sum_probs=88.4
Q ss_pred hcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEe
Q psy11646 13 MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVA 90 (433)
Q Consensus 13 ~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~ 90 (433)
++-+.-..+....++.+. .+|.|||.||-|-|-.. .+++..-|. +=+.++..|+.++..+... ...++-...+
T Consensus 82 VMm~WEtpiMha~A~ai~-tkggrvLnVGFGMgIid-T~iQe~~p~---~H~IiE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 82 VMMRWETPIMHALAEAIS-TKGGRVLNVGFGMGIID-TFIQEAPPD---EHWIIEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred hhhhhhhHHHHHHHHHHh-hCCceEEEeccchHHHH-HHHhhcCCc---ceEEEecCHHHHHHHHhcccccccceEEEec
Confidence 333444455555555554 56899999999999987 566655442 5577899999999999877 3456766666
Q ss_pred cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
-.++. ++...++.||-|+---.-.+-+|.....+.+.++|||+|++-.
T Consensus 157 ~WeDv-l~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 157 RWEDV-LNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred chHhh-hccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 55543 4445568899998765556778888899999999999998654
No 227
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.84 E-value=0.0011 Score=72.31 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhccc--CCC-------------------------------------C
Q psy11646 20 KLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPN--LPK-------------------------------------S 59 (433)
Q Consensus 20 ~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~--~~~-------------------------------------~ 59 (433)
.+...++....+ +++..++|.+||+|++.++.+... .+. .
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 444455556666 568899999999999986664311 010 0
Q ss_pred CcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCcEeEEEEcccccch----hhHHHHHHHHHHhc
Q psy11646 60 VVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV----QDQRQAISNIYNLL 131 (433)
Q Consensus 60 ~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~----~d~~~~l~~i~~~L 131 (433)
..+++|+|+++.+++.|++++ + ...+++.++|+.+.+.+. ..++||+|+++..+..- .+.....+.+.+.+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 126999999999999999998 2 245889999998754332 22579999999886422 23344444444554
Q ss_pred c---CCCEEEEEe
Q psy11646 132 M---PGGEVLLLL 141 (433)
Q Consensus 132 k---pGG~lll~~ 141 (433)
+ +|+.+++..
T Consensus 335 k~~~~g~~~~llt 347 (702)
T PRK11783 335 KQQFGGWNAALFS 347 (702)
T ss_pred HHhCCCCeEEEEe
Confidence 4 888887654
No 228
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.83 E-value=5.6e-05 Score=69.33 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=65.4
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
+++.+|+|+.||-|.++..++. ... + ..|+++|++|.+++.++++. ...++....+|...... .+.||.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak-~~~-~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~dr 172 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAK-HGK-A-KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDR 172 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHH-HT--S-SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEE
T ss_pred CcceEEEEccCCccHHHHHHhh-hcC-c-cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCE
Confidence 6799999999999999965543 222 2 48999999999999999988 33568899999877532 389999
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEE
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVL 138 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~ll 138 (433)
|+++..-... ..+..+.+++++||.+.
T Consensus 173 vim~lp~~~~----~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPESSL----EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE--TSSGG----GGHHHHHHHEEEEEEEE
T ss_pred EEECChHHHH----HHHHHHHHHhcCCcEEE
Confidence 9998764332 35666788899998763
No 229
>KOG3987|consensus
Probab=97.78 E-value=6.3e-06 Score=74.07 Aligned_cols=94 Identities=22% Similarity=0.325 Sum_probs=71.9
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC 113 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~ 113 (433)
+.++||+|+|.|..+ ..+++ .+.+|++++.|..|....+++- .. +..+.+..-. +-+||+|.|.+.
T Consensus 113 ~~~lLDlGAGdGeit-~~m~p----~feevyATElS~tMr~rL~kk~----yn--Vl~~~ew~~t---~~k~dli~clNl 178 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEIT-LRMAP----TFEEVYATELSWTMRDRLKKKN----YN--VLTEIEWLQT---DVKLDLILCLNL 178 (288)
T ss_pred CeeEEeccCCCcchh-hhhcc----hHHHHHHHHhhHHHHHHHhhcC----Cc--eeeehhhhhc---CceeehHHHHHH
Confidence 568999999999999 55553 3357999999999999888752 22 2222221111 156999999999
Q ss_pred ccchhhHHHHHHHHHHhccC-CCEEEEEe
Q psy11646 114 LHWVQDQRQAISNIYNLLMP-GGEVLLLL 141 (433)
Q Consensus 114 l~~~~d~~~~l~~i~~~Lkp-GG~lll~~ 141 (433)
+....++-..++.++.+|+| +|+++++.
T Consensus 179 LDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 179 LDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 99888999999999999999 89888764
No 230
>KOG1663|consensus
Probab=97.73 E-value=0.00045 Score=63.61 Aligned_cols=115 Identities=16% Similarity=0.240 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecc
Q psy11646 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANI 92 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di 92 (433)
....++..+++.+ .+.++||||.=+|..+ ...+..+|.+ .+|+++|+++...+.+.+.. ....|++++++.
T Consensus 60 d~g~fl~~li~~~---~ak~~lelGvfTGySa-L~~Alalp~d-Grv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 60 DKGQFLQMLIRLL---NAKRTLELGVFTGYSA-LAVALALPED-GRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred HHHHHHHHHHHHh---CCceEEEEecccCHHH-HHHHHhcCCC-ceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 3445555555554 4679999999999887 4455566665 69999999999999987665 346788998887
Q ss_pred cCCcccc----cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 93 ADQNLES----IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 93 ~~~~l~~----~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
.+. +.+ ...++||.+|.-. |=.+....+.++.+++|+||.+++-
T Consensus 135 ~es-Ld~l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 135 LES-LDELLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hhh-HHHHHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 543 222 3348899998621 2223346788899999999998764
No 231
>KOG1269|consensus
Probab=97.72 E-value=6.4e-05 Score=75.05 Aligned_cols=102 Identities=26% Similarity=0.395 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.++..++|+|||-|... ..++.. .. ..++|+|.++..+..+.... ....-.++..|+...++++ ..||.
T Consensus 109 ~~~~~~~~~~~g~~~~~-~~i~~f-~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~fd~ 181 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPS-RYIAVF-KK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTFDG 181 (364)
T ss_pred cccccccccCcCcCchh-HHHHHh-cc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cccCc
Confidence 57778999999999998 555433 22 47999999999888877665 2234445778888777666 99999
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+-+..+..|.++...++.+++++++|||..+.-
T Consensus 182 v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 182 VRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 999999999999999999999999999998764
No 232
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.72 E-value=0.0015 Score=62.42 Aligned_cols=161 Identities=15% Similarity=0.210 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCC----CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC------------
Q psy11646 18 AAKLLSQYIDQFKW----TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT------------ 81 (433)
Q Consensus 18 ~~~ll~~l~~~l~~----~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~------------ 81 (433)
...+++++.+.++. ....+||--|||.|.++..++. .+ ..+.|.|.|--|+-..+-.+.
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~----~G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~P 111 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAK----LG-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYP 111 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhh----cc-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEec
Confidence 34455555555442 2457899999999999966654 24 699999999999755432110
Q ss_pred -------------------------------CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHh
Q psy11646 82 -------------------------------NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNL 130 (433)
Q Consensus 82 -------------------------------~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~ 130 (433)
..++....+|+.+.-.++...++||.|+..+.+...++.-..++.|.++
T Consensus 112 f~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~l 191 (270)
T PF07942_consen 112 FVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHL 191 (270)
T ss_pred ceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHH
Confidence 0123344444443321111237899999999999889999999999999
Q ss_pred ccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCC
Q psy11646 131 LMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGA 210 (433)
Q Consensus 131 LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~a 210 (433)
|||||..+- ..|+. -.|.... ...+..-+.+.+++.......+++++.....
T Consensus 192 LkpgG~WIN----~GPLl---------yh~~~~~---------------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 192 LKPGGYWIN----FGPLL---------YHFEPMS---------------IPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred hccCCEEEe----cCCcc---------ccCCCCC---------------CCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 999996553 23321 1111110 0011122346778888877788888766553
Q ss_pred C
Q psy11646 211 P 211 (433)
Q Consensus 211 p 211 (433)
.
T Consensus 244 i 244 (270)
T PF07942_consen 244 I 244 (270)
T ss_pred e
Confidence 3
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.71 E-value=0.00028 Score=74.66 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=54.5
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCC-----CCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcc--ccccc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPK-----SVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNL--ESIFL 102 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~-----~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l--~~~~~ 102 (433)
.+.+|||.|||+|.++..++...... ....++|+|+++.++..|+.++ ....+.+...|...... .....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 35689999999999986665433210 1147899999999999999886 21234445454332211 11122
Q ss_pred CcEeEEEEccccc
Q psy11646 103 AKFNKIFSFYCLH 115 (433)
Q Consensus 103 ~~fD~Vis~~~l~ 115 (433)
+.||+|+++..+-
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 6899999998765
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.70 E-value=0.00052 Score=65.84 Aligned_cols=103 Identities=17% Similarity=0.358 Sum_probs=65.7
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-----CCCeEEEEecccCCcccccccCcEeEE
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-----NPKLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-----~~~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
+.+|+=||||+=-+|...+++....+ ..++++|+++.+++.|++... ..++.|..+|+.+.... ...||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~-~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---l~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPG-ARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---LKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT---EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc---cccCCEE
Confidence 45999999999998866666443222 489999999999999988652 57899999998764322 2679999
Q ss_pred EEcccccc-hhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 109 FSFYCLHW-VQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 109 is~~~l~~-~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+....... -++..+++.++.+.++||..+++-
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 88766542 246788999999999999988774
No 235
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.66 E-value=0.00029 Score=70.53 Aligned_cols=99 Identities=18% Similarity=0.277 Sum_probs=63.3
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeE
Q psy11646 10 NNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLE 86 (433)
Q Consensus 10 ~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~ 86 (433)
+.+.....+..+++.+++.+...++ +|||+-||.|.++. .++. .+.+|+|+|+++.+++.|++++ +..+++
T Consensus 174 FfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl-~la~----~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~ 247 (352)
T PF05958_consen 174 FFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSL-PLAK----KAKKVIGVEIVEEAVEDARENAKLNGIDNVE 247 (352)
T ss_dssp ---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHH-HHHC----CSSEEEEEES-HHHHHHHHHHHHHTT--SEE
T ss_pred CccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHH-HHHh----hCCeEEEeeCCHHHHHHHHHHHHHcCCCcce
Confidence 3444555677888888888876655 89999999999994 4553 2359999999999999999998 457899
Q ss_pred EEEecccCCcc-----------cc--cccCcEeEEEEcccc
Q psy11646 87 FVVANIADQNL-----------ES--IFLAKFNKIFSFYCL 114 (433)
Q Consensus 87 ~~~~Di~~~~l-----------~~--~~~~~fD~Vis~~~l 114 (433)
|..+++++... .. .....+|+|+.-.+=
T Consensus 248 f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 248 FIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp EEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred EEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence 99887654210 00 112368999885543
No 236
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=97.65 E-value=0.00085 Score=71.28 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=82.0
Q ss_pred cccccchHHHHHHhcC--CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC---HHH
Q psy11646 183 DITKESTIKEIFSHFD--DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN---VVC 257 (433)
Q Consensus 183 Di~~~~t~~~il~~~~--~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~---~~~ 257 (433)
|.++..|++-....-. ...+|++++||- ..|......+-..-.+.+..+|.++|+++.|.|-..- ...
T Consensus 395 DLs~~~TW~YF~~l~~~~~~~idLiv~DmE-------V~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~ 467 (675)
T PF14314_consen 395 DLSDPETWKYFVSLKKQHNLSIDLIVMDME-------VRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYN 467 (675)
T ss_pred ccCCccHHHHHHHHHhhcCCcccEEEEece-------ecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhh
Confidence 5556666665554443 347899999996 3445555555555567777889999999999998733 337
Q ss_pred HHHHHhcccceeEEecCCCCcccccceeEEEeeccCCC
Q psy11646 258 LETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPPK 295 (433)
Q Consensus 258 ~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~~~~~~ 295 (433)
....+..+|+.|.+..+.-|=+.++|+|+||++++...
T Consensus 468 il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 468 ILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP 505 (675)
T ss_pred HHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC
Confidence 88889999999999999999999999999999998654
No 237
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.63 E-value=0.00041 Score=65.93 Aligned_cols=124 Identities=19% Similarity=0.327 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCC-CCCEEEEECCCCC--hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCC--eEEEEeccc
Q psy11646 20 KLLSQYIDQFKWT-DNESVLDVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPK--LEFVVANIA 93 (433)
Q Consensus 20 ~ll~~l~~~l~~~-~~~~VLDIGcG~G--~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~--i~~~~~Di~ 93 (433)
..+.+..+.+... .-...||||||-- ..+..++....|.. +|+-+|..|-.+..++..+ ..++ ..++++|+.
T Consensus 54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~a--RVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r 131 (267)
T PF04672_consen 54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDA--RVVYVDNDPVVLAHARALLADNPRGRTAYVQADLR 131 (267)
T ss_dssp HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT---EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT
T ss_pred HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCc--eEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCC
Confidence 3444444444333 2346999999943 34446666666654 9999999999999999987 4455 889999997
Q ss_pred CCc--ccc-cccCcEe-----EEEEcccccchh---hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 94 DQN--LES-IFLAKFN-----KIFSFYCLHWVQ---DQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 94 ~~~--l~~-~~~~~fD-----~Vis~~~l~~~~---d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
+.. +.. ...+-+| .|++..++||++ ++..+++.+.+.|.||.+|+++..+..
T Consensus 132 ~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 132 DPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp -HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 632 110 0112233 688888999995 478899999999999999999866543
No 238
>KOG3201|consensus
Probab=97.62 E-value=6.8e-05 Score=65.03 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC------CCCeEEEE
Q psy11646 17 DAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT------NPKLEFVV 89 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~------~~~i~~~~ 89 (433)
+.++.|..++-+-.. -.|.+|||+|.|--+++-.+++...+. ..|..+|-++..++..++... ..++....
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~--~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlr 89 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPD--SSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLR 89 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCC--ceEEEecCCHHHHHHHHHHHhcccccccceehhhH
Confidence 344455544433222 257899999999777664556555554 489999999999988877651 12233333
Q ss_pred ecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
.++..... +.....||.|++..++..-+-.+..++.|+.+|+|.|.-++..+-...
T Consensus 90 w~~~~aqs-q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 90 WLIWGAQS-QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred HHHhhhHH-HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 34433221 123368999999999988777888999999999999997776655443
No 239
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00022 Score=69.20 Aligned_cols=137 Identities=19% Similarity=0.232 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEe
Q psy11646 14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVA 90 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~ 90 (433)
+.......|.++.....--.+.+|||+|.|+|... ..+...+|.- ..++.++.|+..-+...... ......+...
T Consensus 94 ~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl-~A~n~i~Pdl-~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s 171 (484)
T COG5459 94 TYASVRASLDELQKRVPDFAPQSILDVGAGPGTGL-WALNDIWPDL-KSAVILEASPALRKVGDTLAENVSTEKTDWRAS 171 (484)
T ss_pred HHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhh-hhhcccCCCc-hhhhhhccCHHHHHHHHHHHhhcccccCCCCCC
Confidence 33345556666665554446778999999999887 6666667664 46778888886654433322 1222334444
Q ss_pred cccCCcccccccCcEeEEEEcccccchhh---HHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHWVQD---QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE 152 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d---~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~ 152 (433)
|+....++-.....|++|+...-|-+..+ ....++.++.+++|||.+++.+.+..-.++.+.
T Consensus 172 ~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~ 236 (484)
T COG5459 172 DVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERIL 236 (484)
T ss_pred ccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHH
Confidence 44332222112255676666655544433 234789999999999999999877654444443
No 240
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.00047 Score=63.70 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCc-EeEEE
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAK-FNKIF 109 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~-fD~Vi 109 (433)
+.+++|||+|.|--+ ..++-..|.. +++-+|....-+.+.++.. +.++++++++.+++..-. .. ||+|+
T Consensus 68 ~~~~~DIGSGaGfPG-ipLAI~~p~~--~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPG-IPLAIAFPDL--KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCch-hhHHHhccCC--cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEE
Confidence 589999999999888 3444445555 7999999887776666554 667899999999885322 23 99999
Q ss_pred EcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646 110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
+-.+ .+......-+..++++||.++.
T Consensus 141 sRAv----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 SRAV----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eehc----cchHHHHHHHHHhcccCCcchh
Confidence 9765 3455667778899999988654
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.0007 Score=67.34 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhccc--CCCCCc----------------------------------E
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN--LPKSVV----------------------------------K 62 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~--~~~~~~----------------------------------~ 62 (433)
+.+...++....|+++..++|-=||+|++++..+.-. ..++.. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 3555567777788888899999999999986653321 111111 3
Q ss_pred EEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEEEEccccc-chhh---HH----HHHHHHHHh
Q psy11646 63 LVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQD---QR----QAISNIYNL 130 (433)
Q Consensus 63 v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~-~~~d---~~----~~l~~i~~~ 130 (433)
++|+|+++.+++.|+.++ ....|+|.++|+.....+. +.+|+|||+...- -+.+ .. .+.+.+++.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 789999999999999998 3356999999998854332 6899999998763 2222 22 233344455
Q ss_pred ccCCCEEEEE
Q psy11646 131 LMPGGEVLLL 140 (433)
Q Consensus 131 LkpGG~lll~ 140 (433)
++--+..+++
T Consensus 334 ~~~ws~~v~t 343 (381)
T COG0116 334 LAGWSRYVFT 343 (381)
T ss_pred hcCCceEEEE
Confidence 5555566654
No 242
>KOG4589|consensus
Probab=97.57 E-value=0.00057 Score=60.82 Aligned_cols=113 Identities=17% Similarity=0.269 Sum_probs=72.4
Q ss_pred HHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe-cccCCcc----
Q psy11646 24 QYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA-NIADQNL---- 97 (433)
Q Consensus 24 ~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~-Di~~~~l---- 97 (433)
++-++.+. +|+.+|||+||.+|.|+.....+..|.+ .+.|+|+-.-. ...++.++++ |+++...
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g--~v~gVDllh~~--------p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNG--MVLGVDLLHIE--------PPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCc--eEEEEeeeecc--------CCCCcccccccccCCHHHHHHH
Confidence 44555553 6899999999999999954444444665 89999985421 3356667776 7765421
Q ss_pred -cccccCcEeEEEEccccc--------chhh---HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 98 -ESIFLAKFNKIFSFYCLH--------WVQD---QRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 98 -~~~~~~~fD~Vis~~~l~--------~~~d---~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
+..++...|+|+|-..-. |... ...++.-....++|+|.++.-......
T Consensus 129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 113347789999844321 2211 234556666788999999886554433
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.50 E-value=8.9e-05 Score=60.71 Aligned_cols=100 Identities=24% Similarity=0.250 Sum_probs=44.3
Q ss_pred EEECCCCChhHHHHhcccCCCCC-cEEEEEeCCHH---HHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646 38 LDVGCGPGNVTSKLLLPNLPKSV-VKLVGLDVSPN---MIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC 113 (433)
Q Consensus 38 LDIGcG~G~~~~~~l~~~~~~~~-~~v~gvDiS~~---~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~ 113 (433)
||||+..|..+..+ ++.++... .+++++|..+. .-+..++.....+++++.++..+. ++....+++|+++.-..
T Consensus 1 lEiG~~~G~st~~l-~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWL-ASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF-LPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHH-HHHHHH--EEEEEEES-
T ss_pred Cccccccccccccc-cccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH-HHHcCCCCEEEEEECCC
Confidence 69999999988444 44443332 37999999994 444444322335799999997653 33333479999998653
Q ss_pred ccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 114 LHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 114 l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
|..+.....+..+.+.|+|||.+++-
T Consensus 79 -H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 33345667789999999999988764
No 244
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0018 Score=60.16 Aligned_cols=110 Identities=21% Similarity=0.354 Sum_probs=75.2
Q ss_pred HHHHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCe-EEEEecccCCcccc
Q psy11646 22 LSQYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL-EFVVANIADQNLES 99 (433)
Q Consensus 22 l~~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i-~~~~~Di~~~~l~~ 99 (433)
|...++.+... ++..+||||+.||.+|.-++. .+..+|+++|..-..+..--+. ++++ .+...++.... ++
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq----~gAk~VyavDVG~~Ql~~kLR~--d~rV~~~E~tN~r~l~-~~ 139 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQ----RGAKHVYAVDVGYGQLHWKLRN--DPRVIVLERTNVRYLT-PE 139 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHH----cCCcEEEEEEccCCccCHhHhc--CCcEEEEecCChhhCC-HH
Confidence 44556666655 688999999999999954444 4446999999988766543322 2444 34555665542 22
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
...+..|++++--++- ....++..+..+++|+|.++...
T Consensus 140 ~~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 140 DFTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred HcccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence 2334778888866654 34678899999999999887654
No 245
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.45 E-value=0.00019 Score=63.41 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=49.8
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CCCeEEEEecccCCcccccccCc-EeEEEE
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NPKLEFVVANIADQNLESIFLAK-FNKIFS 110 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~~i~~~~~Di~~~~l~~~~~~~-fD~Vis 110 (433)
.|+|+.||.|..+..++. . +.+|+++|+++..++.|+.++ + ..+++++++|+.+. ........ +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~-~----~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~-~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR-T----FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL-LKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHH-T----T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH-GGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHH-h----CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH-HhhccccccccEEEE
Confidence 699999999999966654 2 258999999999999999998 3 56899999998764 22211122 799998
Q ss_pred ccccc
Q psy11646 111 FYCLH 115 (433)
Q Consensus 111 ~~~l~ 115 (433)
...+-
T Consensus 76 SPPWG 80 (163)
T PF09445_consen 76 SPPWG 80 (163)
T ss_dssp ---BS
T ss_pred CCCCC
Confidence 76543
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00097 Score=59.90 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
.|++|||+|+|+|-.++..+. .+...|+..|+.|......+-+. ..-.+.+...|+... +..||+++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~----aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~------~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR----AGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGS------PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHH----hhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCC------CcceeEEEe
Confidence 689999999999998743332 23357999999998888877776 334566777776542 267999999
Q ss_pred cccccchhhHHHHHHHHHHhccCCCEEEE-EeccC
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGGEVLL-LLNAF 144 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll-~~~~~ 144 (433)
..+++.-....+++. ..+.++..|.-++ .+++.
T Consensus 149 gDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 149 GDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 998876555566677 5555655554444 34433
No 247
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.0011 Score=65.54 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.+|.+|||.=||-|.++..++.. +...|+++|++|.+++..++++ ....+..+++|........ +.+|.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~----g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDr 259 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK----GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADR 259 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc----CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCE
Confidence 46999999999999999655542 2135999999999999999998 2244889999988753322 77999
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
|+++..- +....+....+.+++||.+..-....
T Consensus 260 Iim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 260 IIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred EEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccc
Confidence 9998874 23456667778888899988876544
No 248
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.40 E-value=0.0017 Score=56.17 Aligned_cols=102 Identities=21% Similarity=0.391 Sum_probs=63.1
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCC--CCCcEEEEEeCCHHHHHHHHhhc---C---CCCeEEEEecccCCcccccccC
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLP--KSVVKLVGLDVSPNMIKHAKNHH---T---NPKLEFVVANIADQNLESIFLA 103 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~--~~~~~v~gvDiS~~~l~~A~~~~---~---~~~i~~~~~Di~~~~l~~~~~~ 103 (433)
.+..+|+|+|||.|.++ .+++..++ ....+|+|+|.++..++.|+++. . ..++++...++..... ..
T Consensus 24 ~~~~~vvD~GsG~GyLs-~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLS-RALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS----SD 98 (141)
T ss_pred CCCCEEEEeCCChhHHH-HHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc----cC
Confidence 56889999999999999 55554221 01259999999999999988876 2 1445555555543211 24
Q ss_pred cEeEEEEcccccchhhH-HHHHHHHHHhccCCCEEEEEeccC
Q psy11646 104 KFNKIFSFYCLHWVQDQ-RQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~-~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
..++++.. |...+. ..+++...+ |+-..++..+..
T Consensus 99 ~~~~~vgL---HaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 99 PPDILVGL---HACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred CCeEEEEe---ecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 56777764 444443 234444333 665555554443
No 249
>KOG1122|consensus
Probab=97.35 E-value=0.00074 Score=67.23 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=79.3
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcE
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
+..++|.||||.++.+|.-|. .++.+.... ..+++.|.+..-+...+.++ +..+......|....+-.. ..++|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt-~IAalMkn~-G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-~~~~f 313 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTT-HIAALMKNT-GVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-FPGSF 313 (460)
T ss_pred cCCCCCCeecchhcCCCchHH-HHHHHHcCC-ceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-cCccc
Confidence 345689999999999999884 444444333 49999999999998888877 5566666777766532222 23489
Q ss_pred eEEEEcccccc------------hh----------hHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 106 NKIFSFYCLHW------------VQ----------DQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 106 D~Vis~~~l~~------------~~----------d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
|-|+.-..... .. -+++.+.....++++||+|+.++.+-.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 99985221111 11 145678888999999999998865443
No 250
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.34 E-value=0.0019 Score=63.39 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF 111 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~ 111 (433)
.+|.++|||||++|.++..++. .+ .+|+++|..+ |.... ...++|.....|......+ .+.+|.++|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~----rG-~~V~AVD~g~-l~~~L---~~~~~V~h~~~d~fr~~p~---~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVR----RG-MFVTAVDNGP-MAQSL---MDTGQVEHLRADGFKFRPP---RKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHH----cC-CEEEEEechh-cCHhh---hCCCCEEEEeccCcccCCC---CCCCCEEEEe
Confidence 5799999999999999954443 23 5999999664 33222 2457888888886554221 3789999996
Q ss_pred ccccchhhHHHHHHHHHHhccCC
Q psy11646 112 YCLHWVQDQRQAISNIYNLLMPG 134 (433)
Q Consensus 112 ~~l~~~~d~~~~l~~i~~~LkpG 134 (433)
.+ ..+..+.+-+.++|..|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC
Confidence 65 34667777888888755
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0025 Score=57.60 Aligned_cols=110 Identities=14% Similarity=0.237 Sum_probs=74.7
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcE
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
+.++.++|.+||=+|+.+|... ..++...+.+ .+++++.|+.+....-... ..+|+-=+..|+....--...-+..
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTv-SHVSDIv~~G--~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTV-SHVSDIVGEG--RIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcH-hHHHhccCCC--cEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccc
Confidence 3455678999999999999987 5556666655 8999999998765543333 2367777778876531111223567
Q ss_pred eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+|+.--+ -....+-+..|+...||+||.++++.
T Consensus 147 Dviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 147 DVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cEEEEecC--CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 88876322 11223456889999999999888864
No 252
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.30 E-value=0.0025 Score=64.00 Aligned_cols=142 Identities=15% Similarity=0.230 Sum_probs=76.6
Q ss_pred chhhhhhhhhhcHHHHHHHH---HHHHHhcCC---C-CCCEEEEECCCCChhHHHHhccc-------CC-----CCCcEE
Q psy11646 3 KATLYETNNSMQQLDAAKLL---SQYIDQFKW---T-DNESVLDVGCGPGNVTSKLLLPN-------LP-----KSVVKL 63 (433)
Q Consensus 3 ~a~~Y~~~~~~~~~~~~~ll---~~l~~~l~~---~-~~~~VLDIGcG~G~~~~~~l~~~-------~~-----~~~~~v 63 (433)
.+..|.+....|+..+.... ++.+..+.. . ...+|+|+|||+|..+...+... .. ..-.++
T Consensus 26 g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv 105 (386)
T PLN02668 26 GEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSA 105 (386)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceE
Confidence 45778888888887555443 443322321 1 35689999999998774332211 10 001467
Q ss_pred EEEeCCHHHHHHHHhhc----------------CCCCeEEEEecccCCcccc-cccCcEeEEEEcccccchhhH------
Q psy11646 64 VGLDVSPNMIKHAKNHH----------------TNPKLEFVVANIADQNLES-IFLAKFNKIFSFYCLHWVQDQ------ 120 (433)
Q Consensus 64 ~gvDiS~~~l~~A~~~~----------------~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~l~~~~d~------ 120 (433)
..-|.-..-....=+.+ ...+ .+...-+-..-... ++.++.++++|++++||+...
T Consensus 106 ~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~-~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d 184 (386)
T PLN02668 106 FFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR-SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTD 184 (386)
T ss_pred EecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC-ceEEEecCccccccccCCCceEEEEeeccceecccCchhhcc
Confidence 77776432221111111 0001 12222211110111 344899999999999998531
Q ss_pred --------------------------------HHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 121 --------------------------------RQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 121 --------------------------------~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
...|+.-.+-|.|||+++++..+..
T Consensus 185 ~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 185 KRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred CCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCC
Confidence 1223344556889999998887653
No 253
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.28 E-value=0.00054 Score=60.97 Aligned_cols=96 Identities=14% Similarity=0.255 Sum_probs=74.0
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
.+.+.|+|+|+|-++ .++++. ..+|++++.+|.....|+++. +..+++++.+|+.+..+ +..|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs-~~Aa~~----A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILS-VVAAHA----AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHH-HHHHhh----hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHH
Confidence 468999999999998 444432 248999999999999999996 56789999999988765 35788887
Q ss_pred ccc--ccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646 111 FYC--LHWVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 111 ~~~--l~~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
-.. .--.+.+..+++.+.+.||-++.++=
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 332 11223456788888999999988764
No 254
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.26 E-value=0.0012 Score=64.29 Aligned_cols=92 Identities=21% Similarity=0.359 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCc--
Q psy11646 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQN-- 96 (433)
Q Consensus 21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~-- 96 (433)
+++++++.+..++++.++|.-+|.|..+..++. .++.+ +|+|+|.++.+++.|++++ ...++++++++..+..
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~-~l~~g--~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILE-QLGTG--RLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEH 84 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHH-hCCCC--EEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHH
Confidence 466777777778889999999999999965654 44444 9999999999999999987 2357889888877632
Q ss_pred ccccccCcEeEEEEccccc
Q psy11646 97 LESIFLAKFNKIFSFYCLH 115 (433)
Q Consensus 97 l~~~~~~~fD~Vis~~~l~ 115 (433)
+......++|.|+....+.
T Consensus 85 l~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 85 LDELLVTKIDGILVDLGVS 103 (305)
T ss_pred HHhcCCCcccEEEEeccCC
Confidence 1111225688888766543
No 255
>KOG2352|consensus
Probab=97.21 E-value=0.0039 Score=63.54 Aligned_cols=104 Identities=15% Similarity=0.367 Sum_probs=83.1
Q ss_pred CCC-EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 33 DNE-SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 33 ~~~-~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
+.. ++|-+|||.-.++..+.+ .++..++.+|+|+..++....+. ....+.+...|+....+++ ++||+|+
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~----~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed---ESFdiVI 119 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYK----NGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED---ESFDIVI 119 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHh----cCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC---cceeEEE
Confidence 444 999999999887744433 56678999999999999888776 4466889999998887776 9999999
Q ss_pred Ecccccchh----------hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 110 SFYCLHWVQ----------DQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 110 s~~~l~~~~----------d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
.-+.++++- .....+.++.+++++||+.+.....
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 999888762 1234578999999999998877653
No 256
>KOG2187|consensus
Probab=97.17 E-value=0.0008 Score=68.66 Aligned_cols=74 Identities=24% Similarity=0.456 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEeccc
Q psy11646 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIA 93 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~ 93 (433)
.++.+-.-+-+....+.+..+||+.||||.++ ..++ .+..+|+|+++++++++.|++++ +..|.+|+++-.+
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~ig-lala----~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIG-LALA----RGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCcee-hhhh----ccccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 34444444445555677888999999999998 4444 33358999999999999999998 5578899999665
Q ss_pred CC
Q psy11646 94 DQ 95 (433)
Q Consensus 94 ~~ 95 (433)
+.
T Consensus 442 ~~ 443 (534)
T KOG2187|consen 442 DL 443 (534)
T ss_pred hc
Confidence 53
No 257
>KOG2198|consensus
Probab=97.04 E-value=0.01 Score=58.57 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=78.3
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCC-CcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCccc------
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKS-VVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLE------ 98 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~-~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~------ 98 (433)
+..+|+.+|||+++.+|.-+..++....... -..+++-|.++.-+...+... ...++.+...|+...+-.
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 4458999999999999999977777665331 137999999987666555544 445555555555443211
Q ss_pred ccccCcEeEEEEcccc-------------c--chh--------hHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 99 SIFLAKFNKIFSFYCL-------------H--WVQ--------DQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l-------------~--~~~--------d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
+.....||-|++--.. . |.. -+-..+.+-.++||+||.++-++.+.+|
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 1123579999972111 0 110 1245688999999999999999877776
No 258
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.01 E-value=0.0036 Score=60.74 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C---CCCeEEEEecccCCcccc--cccCcEe
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T---NPKLEFVVANIADQNLES--IFLAKFN 106 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~---~~~i~~~~~Di~~~~l~~--~~~~~fD 106 (433)
..++||||+|..+.- .+|..... +++++|+|+++..++.|+++. . ..+|+++...-...-+.. ...+.||
T Consensus 103 ~v~glDIGTGAscIY-pLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIY-PLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHH-HHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHH-HHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceee
Confidence 468999999999875 44443322 389999999999999999988 2 357887665422221221 2236899
Q ss_pred EEEEcccccchh
Q psy11646 107 KIFSFYCLHWVQ 118 (433)
Q Consensus 107 ~Vis~~~l~~~~ 118 (433)
+.+|+..+|...
T Consensus 180 ftmCNPPFy~s~ 191 (299)
T PF05971_consen 180 FTMCNPPFYSSQ 191 (299)
T ss_dssp EEEE-----SS-
T ss_pred EEecCCccccCh
Confidence 999999998664
No 259
>KOG1098|consensus
Probab=96.99 E-value=0.00027 Score=73.01 Aligned_cols=114 Identities=25% Similarity=0.387 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecc
Q psy11646 14 QQLDAAKLLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI 92 (433)
Q Consensus 14 ~~~~~~~ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di 92 (433)
..+.+..+| ++-.++.+ .++..|||+||.+|.|. ..+.+.+|-+ .-|+|+|+-|-- ..+++..++.||
T Consensus 25 rsRsaFKLl-Qln~ky~fl~~a~~vlDLcaAPG~W~-QVA~q~~pv~-slivGvDl~pik--------p~~~c~t~v~dI 93 (780)
T KOG1098|consen 25 RSRSAFKLL-QLNKKYKFLEKAHVVLDLCAAPGGWL-QVASQSMPVG-SLIVGVDLVPIK--------PIPNCDTLVEDI 93 (780)
T ss_pred hHHHHHHHH-HHHHHhccccccchheeeccCCcHHH-HHHHHhCCCC-ceEEEeeeeecc--------cCCccchhhhhh
Confidence 334555555 44555543 57788999999999999 7777777765 689999997632 235666677777
Q ss_pred cCCcccc-----cccCcEeEEEEccc----ccchhhH-------HHHHHHHHHhccCCCEEE
Q psy11646 93 ADQNLES-----IFLAKFNKIFSFYC----LHWVQDQ-------RQAISNIYNLLMPGGEVL 138 (433)
Q Consensus 93 ~~~~l~~-----~~~~~fD~Vis~~~----l~~~~d~-------~~~l~~i~~~LkpGG~ll 138 (433)
+...... ......|+|+.-.+ ..|..|. -.+++-....|+.||.++
T Consensus 94 ttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 94 TTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred hHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 6543221 11244588886432 2344431 234555667788888844
No 260
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.90 E-value=0.0065 Score=57.08 Aligned_cols=104 Identities=15% Similarity=0.267 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
.+..+|+|||||.=-++..++. ..+ + ..|+|.||+..+++....-. ......+...|+...+.+ ...|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~-~~~-~-a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~----~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMP-EAP-G-ATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPK----EPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTT-SST-T--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTT----SEESEEE
T ss_pred CCCchhhhhhccCCceehhhcc-cCC-C-cEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCC----CCcchhh
Confidence 3578999999999988855543 222 2 59999999999999988776 446777888898776433 7899999
Q ss_pred EcccccchhhHHH-HHHHHHHhccCCCEEEEEecc
Q psy11646 110 SFYCLHWVQDQRQ-AISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 110 s~~~l~~~~d~~~-~l~~i~~~LkpGG~lll~~~~ 143 (433)
..-+++-++.+.. .--++.+.++ .-.++++++.
T Consensus 177 llK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPt 210 (251)
T PF07091_consen 177 LLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPT 210 (251)
T ss_dssp EET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES
T ss_pred HHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccc
Confidence 9999998865433 2234444443 2356666654
No 261
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.90 E-value=0.0018 Score=58.05 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCH----------HHHHHHHhhcCCCCeEEEEec
Q psy11646 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP----------NMIKHAKNHHTNPKLEFVVAN 91 (433)
Q Consensus 22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~----------~~l~~A~~~~~~~~i~~~~~D 91 (433)
-.+++....++++.+|+|+-.|.|.++ +++.......+ .|++.-..+ .+-..+++. ...+++.+-.+
T Consensus 37 p~E~L~FaGlkpg~tVid~~PGgGy~T-rI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~ 113 (238)
T COG4798 37 PGEVLAFAGLKPGATVIDLIPGGGYFT-RIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKP 113 (238)
T ss_pred ccceeEEeccCCCCEEEEEecCCccHh-hhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCc
Confidence 335666777899999999999999999 77777665442 666653332 222222222 12334433333
Q ss_pred ccCCcccccccCcEeEEEEcccccc-------hhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 92 IADQNLESIFLAKFNKIFSFYCLHW-------VQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 92 i~~~~l~~~~~~~fD~Vis~~~l~~-------~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
+.....+ +..|++......|. .....++.+.+++.|||||.+++.+....+
T Consensus 114 ~~A~~~p----q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 114 LVALGAP----QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred ccccCCC----CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 3333222 34455554333332 234578899999999999999988755443
No 262
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.80 E-value=0.0032 Score=54.14 Aligned_cols=56 Identities=16% Similarity=0.351 Sum_probs=43.2
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccC
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIAD 94 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~ 94 (433)
.|||||||.|.++ ..++...+.. +++++|+++.+.+.+++++ ...++++....+.+
T Consensus 1 ~vlDiGa~~G~~~-~~~~~~~~~~--~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTS-LYFARKGAEG--RVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHH-HHHHHhCCCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999998 4555554443 8999999999999999886 22457777777654
No 263
>KOG3115|consensus
Probab=96.69 E-value=0.0096 Score=53.86 Aligned_cols=104 Identities=18% Similarity=0.364 Sum_probs=68.9
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------CCCCeEEEEecccCCcccc-ccc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----------TNPKLEFVVANIADQNLES-IFL 102 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----------~~~~i~~~~~Di~~~~l~~-~~~ 102 (433)
...+.|||||-|.++ .-|++.+|.. -+.|++|--..-++.+++. ...++.+...+.... +++ +..
T Consensus 61 kvefaDIGCGyGGLl-v~Lsp~fPdt--LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~-lpn~f~k 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLL-MKLAPKFPDT--LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF-LPNFFEK 136 (249)
T ss_pred cceEEeeccCccchh-hhccccCccc--eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh-ccchhhh
Confidence 356899999999999 6778888886 8999999888877777765 124566666665543 343 222
Q ss_pred CcEeEEEEcccccchhh--------HHHHHHHHHHhccCCCEEEEEe
Q psy11646 103 AKFNKIFSFYCLHWVQD--------QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d--------~~~~l~~i~~~LkpGG~lll~~ 141 (433)
++.+..+....=-|... ....+.+..-+|++||.++...
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 44443333332222211 1346788889999999988653
No 264
>KOG2730|consensus
Probab=96.54 E-value=0.0038 Score=57.11 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=68.0
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccc--cccCcEe
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLES--IFLAKFN 106 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~--~~~~~fD 106 (433)
....|+|.-||.|+.+..++. .+ ..|+++|++|.-+.-|+.++ -..+|+|+++|+.+. ... +....+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~----~~-~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~-~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFAL----QG-PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL-ASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHH----hC-CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH-HHHHhhhhheee
Confidence 355799999999999866655 22 48999999999999999998 235999999998764 221 2235578
Q ss_pred EEEEcccccchhhHHHHHHHHHHhccCCC
Q psy11646 107 KIFSFYCLHWVQDQRQAISNIYNLLMPGG 135 (433)
Q Consensus 107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG 135 (433)
+|+.+.......-...-+-.+...++|.|
T Consensus 168 ~vf~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 168 CVFLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred eeecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 88887776554333344445555555543
No 265
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.50 E-value=0.022 Score=56.00 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------CCCCeEEEEecccCCccccccc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----------TNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----------~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
.-.+||-+|.|.|-..+++++ .| +..+++-+|.+|+|++.++++. .+++++++..|+.+. +.. ..
T Consensus 289 ~a~~vLvlGGGDGLAlRellk--yP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w-lr~-a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK--YP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW-LRT-AA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh--CC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH-HHh-hc
Confidence 356899999999999866654 23 2369999999999999998433 357888888887664 222 23
Q ss_pred CcEeEEEEcccccchhh-----HHHHHHHHHHhccCCCEEEEEe
Q psy11646 103 AKFNKIFSFYCLHWVQD-----QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d-----~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+.||.||.-..=-..+. -..+..-+.+.|+++|.+++..
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 68999997432111111 1346777889999999998863
No 266
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.48 E-value=0.0076 Score=55.83 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=37.6
Q ss_pred CcEeEEEEcccccchhh-----------HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhh
Q psy11646 103 AKFNKIFSFYCLHWVQD-----------QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d-----------~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~ 154 (433)
++||+|+|..+.++..+ ...+++++.++|+|||.+++.........+.+..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l 178 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREI 178 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHH
Confidence 57899998776655432 24689999999999999999776655554544433
No 267
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.39 E-value=0.018 Score=55.42 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL 97 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l 97 (433)
=++.+.++.+..++++..+|.--|.|..+..+|.+.-+. .+++|+|.++.+++.|+++. ...++.+++..+.....
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~--~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~ 87 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDL--GRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE 87 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCC--CeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH
Confidence 467788888988999999999999999996666654333 38999999999999999988 34688888887765321
Q ss_pred c--ccccCcEeEEEEcc
Q psy11646 98 E--SIFLAKFNKIFSFY 112 (433)
Q Consensus 98 ~--~~~~~~fD~Vis~~ 112 (433)
. ....+++|-|+.-.
T Consensus 88 ~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 88 ALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHhcCCCceeEEEEec
Confidence 1 11125677776543
No 268
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.36 E-value=0.018 Score=49.45 Aligned_cols=83 Identities=13% Similarity=0.261 Sum_probs=56.2
Q ss_pred EEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCccccccc-CcEeEEEEcccccch---------hhHHHHHHHH
Q psy11646 62 KLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFL-AKFNKIFSFYCLHWV---------QDQRQAISNI 127 (433)
Q Consensus 62 ~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~-~~fD~Vis~~~l~~~---------~d~~~~l~~i 127 (433)
+|+|.||.+++++.+++++ ...+++++..+=+. +..... +++|.++.|...--- +..-.+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999998 12478888776554 333223 489999987654211 1245788999
Q ss_pred HHhccCCCEEEEEeccCCc
Q psy11646 128 YNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 128 ~~~LkpGG~lll~~~~~~p 146 (433)
.++|+|||.+.++....++
T Consensus 79 l~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHEEEEEEEEEEE--STC
T ss_pred HHhhccCCEEEEEEeCCCC
Confidence 9999999999998765554
No 269
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.35 E-value=0.014 Score=57.01 Aligned_cols=89 Identities=20% Similarity=0.376 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCc--
Q psy11646 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQN-- 96 (433)
Q Consensus 21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~-- 96 (433)
++.++++.+..+++...+|.--|.|+.+..+|... +.+ +++|+|.++.+++.|++++ ...++.++..++.+..
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~-~~~--~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKL-PNG--RLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT--TT---EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhC-CCC--eEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHH
Confidence 35667777777889999999999999996666544 444 9999999999999999988 3578889888876532
Q ss_pred cccc-ccCcEeEEEEcc
Q psy11646 97 LESI-FLAKFNKIFSFY 112 (433)
Q Consensus 97 l~~~-~~~~fD~Vis~~ 112 (433)
+... ....+|.|+.-.
T Consensus 85 l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 85 LKELNGINKVDGILFDL 101 (310)
T ss_dssp HHHTTTTS-EEEEEEE-
T ss_pred HHHccCCCccCEEEEcc
Confidence 1111 224678777643
No 270
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.29 E-value=0.025 Score=56.30 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccC-------CC------CCcEEEEEeCCHHHHHHHHhhc-------
Q psy11646 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL-------PK------SVVKLVGLDVSPNMIKHAKNHH------- 80 (433)
Q Consensus 21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~-------~~------~~~~v~gvDiS~~~l~~A~~~~------- 80 (433)
.+.++...-......+|+|+||.+|..+...+.... .. .-.+|+..|.-..-....=+.+
T Consensus 4 ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~ 83 (334)
T PF03492_consen 4 AIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSL 83 (334)
T ss_dssp HHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHH
T ss_pred HHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhcc
Confidence 344444333344577999999999999865544221 11 1146777776432221111111
Q ss_pred CCCCeEEE---EecccCCcccccccCcEeEEEEcccccchhh--------------------------------------
Q psy11646 81 TNPKLEFV---VANIADQNLESIFLAKFNKIFSFYCLHWVQD-------------------------------------- 119 (433)
Q Consensus 81 ~~~~i~~~---~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d-------------------------------------- 119 (433)
...+--|. -+..-..-+ +.++.|+++|++++||+..
T Consensus 84 ~~~~~~f~~gvpgSFy~rLf---P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~ 160 (334)
T PF03492_consen 84 KKFRNYFVSGVPGSFYGRLF---PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQK 160 (334)
T ss_dssp HHTTSEEEEEEES-TTS--S----TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHH
T ss_pred CCCceEEEEecCchhhhccC---CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHH
Confidence 00111222 223322223 3489999999999999731
Q ss_pred -HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 120 -QRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 120 -~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
....|+.=.+-|+|||+++++.++...
T Consensus 161 D~~~FL~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 161 DFSSFLKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHHHHHHhhheeccCcEEEEEEeeccc
Confidence 112244445668899999999876554
No 271
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.08 E-value=0.028 Score=51.53 Aligned_cols=116 Identities=15% Similarity=0.245 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhc---ccC-CCCCcEEEEEeCCHHHHHH-HHhhc-CCCCeEEEEeccc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL---PNL-PKSVVKLVGLDVSPNMIKH-AKNHH-TNPKLEFVVANIA 93 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~---~~~-~~~~~~v~gvDiS~~~l~~-A~~~~-~~~~i~~~~~Di~ 93 (433)
-.+.+++-.+ ++..|+|+|.-.|..+ .+.+ ..+ +.+ +|+|+|+....... |.+.. ..++|+++++|..
T Consensus 22 ~~~qeli~~~---kPd~IIE~Gi~~GGSl-i~~A~ml~~~~~~~--~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~ 95 (206)
T PF04989_consen 22 VAYQELIWEL---KPDLIIETGIAHGGSL-IFWASMLELLGGKG--KVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSI 95 (206)
T ss_dssp HHHHHHHHHH-----SEEEEE--TTSHHH-HHHHHHHHHTT-----EEEEEES-GTT--S-GGGG----TTEEEEES-SS
T ss_pred HHHHHHHHHh---CCCeEEEEecCCCchH-HHHHHHHHHhCCCc--eEEEEeCCcchhchHHHhhccccCceEEEECCCC
Confidence 3444555444 3679999999999877 3333 223 444 99999996543322 22221 3479999999986
Q ss_pred CCccccc---ccCcEeE-EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 94 DQNLESI---FLAKFNK-IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 94 ~~~l~~~---~~~~fD~-Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+...-.. .....+- +++-.+-|...+..+.|+....++++|+++++.+
T Consensus 96 d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 96 DPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp STHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 5432110 1112232 3333344444566778888999999999988754
No 272
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.03 E-value=0.065 Score=49.43 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=60.5
Q ss_pred EEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 37 VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
|.||||--|.+...++... ...+++++|+++.-++.|+++. ...++++..+|-.+. +++ .+..|.|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~---~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~--~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG---KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKP--GEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTT---SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---G--GG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCC--CCCCCEEEEec
Confidence 6899999999996666532 1247999999999999999988 346799999985432 332 12378888766
Q ss_pred cccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 113 CLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+=- .-....+.+....++....+++.
T Consensus 75 MGG--~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 75 MGG--ELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp E-H--HHHHHHHHHTGGGGTT--EEEEE
T ss_pred CCH--HHHHHHHHhhHHHhccCCeEEEe
Confidence 522 12445566666666666677765
No 273
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.01 E-value=0.24 Score=46.48 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=59.4
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
.|.+||-+|=..-... .++..... .+++.+|+++.++++.++.+ ..-.++....|+... +|+...++||+++.
T Consensus 44 ~gk~il~lGDDDLtSl--A~al~~~~--~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~-LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSL--ALALTGLP--KRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDP-LPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT-HHH--HHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCcHHHH--HHHhhCCC--CeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccccc-CCHHHhcCCCEEEe
Confidence 5889999985544333 22222222 49999999999999988776 223499999999874 77767799999999
Q ss_pred cccccchhhHHHHHHHHHHhccCCC-EEEEEe
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGG-EVLLLL 141 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG-~lll~~ 141 (433)
-.+. ..+....++.+....||..| ..++..
T Consensus 119 DPPy-T~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 119 DPPY-TPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp ---S-SHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred CCCC-CHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 7653 23456677888888998655 555544
No 274
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=95.96 E-value=0.022 Score=53.44 Aligned_cols=95 Identities=20% Similarity=0.117 Sum_probs=56.7
Q ss_pred CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEecCCCCc
Q psy11646 199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSR 278 (433)
Q Consensus 199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~~sr 278 (433)
..++|+++|||--..+..-+.+.........-...+.++.|+-||++.+|+=.-.-...+ .++-+.|...+++.- +--
T Consensus 119 ~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~L-yel~~~F~~wt~FcT-~VN 196 (299)
T PF06460_consen 119 PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQL-YELMGYFSWWTCFCT-AVN 196 (299)
T ss_dssp SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHH-HHHHTTEEEEEEEEE-GGG
T ss_pred CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHH-HHHHhhcccEEEEec-ccC
Confidence 457999999998444433333333344455556788999999999999999776664444 455577888877752 333
Q ss_pred ccccceeEEEeeccCCC
Q psy11646 279 NSSIESFIVCQNYRPPK 295 (433)
Q Consensus 279 ~~s~E~~~v~~~~~~~~ 295 (433)
.+|+|+|++|.+|.+..
T Consensus 197 tSSSEaFLigiNYLg~~ 213 (299)
T PF06460_consen 197 TSSSEAFLIGINYLGKF 213 (299)
T ss_dssp TTSS-EEEEEEEE-SS-
T ss_pred ccccceeEEeeeccCcc
Confidence 47999999999998873
No 275
>KOG2793|consensus
Probab=95.95 E-value=0.045 Score=51.70 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh--hc----C--CCCeEEEEecccCCcccccccCc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN--HH----T--NPKLEFVVANIADQNLESIFLAK 104 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~--~~----~--~~~i~~~~~Di~~~~l~~~~~~~ 104 (433)
...+|||+|+|+|..+ .+++.. . ..+|+..|+.......... .- . ...+....++...........+.
T Consensus 86 ~~~~vlELGsGtglvG-~~aa~~-~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVG-ILAALL-L--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHH-HHHHHH-h--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 3567999999999766 333321 2 2488888875433322211 11 1 12455555555443222222344
Q ss_pred -EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 105 -FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 105 -fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
||+|++..+++..+..+.++.-++.+|..+|.+++...
T Consensus 162 ~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99999999999988889999999999999997666543
No 276
>PRK10742 putative methyltransferase; Provisional
Probab=95.88 E-value=0.03 Score=52.81 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=62.1
Q ss_pred HHHHhcCCCCCC--EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-C-------C----CCeEEEE
Q psy11646 24 QYIDQFKWTDNE--SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-T-------N----PKLEFVV 89 (433)
Q Consensus 24 ~l~~~l~~~~~~--~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~-------~----~~i~~~~ 89 (433)
.+++-..++++. +|||+-+|+|..+..++. .+ .+|+++|-++.+....+..+ . . .+++++.
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las----~G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS----VG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHH----cC-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 455556667777 999999999999954443 23 47999999999887776655 1 1 3577778
Q ss_pred ecccCCcccccccCcEeEEEEcccccch
Q psy11646 90 ANIADQNLESIFLAKFNKIFSFYCLHWV 117 (433)
Q Consensus 90 ~Di~~~~l~~~~~~~fD~Vis~~~l~~~ 117 (433)
+|..+. +.. ...+||+|+.-.++.+-
T Consensus 152 ~da~~~-L~~-~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 152 ASSLTA-LTD-ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred CcHHHH-Hhh-CCCCCcEEEECCCCCCC
Confidence 887654 332 22479999998887664
No 277
>KOG1099|consensus
Probab=95.86 E-value=0.021 Score=52.57 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCCC-CCEEEEECCCCChhHHHHhcccCC---CCCc---EEEEEeCCHHHHHHHHhhcCCCCeEEEE
Q psy11646 17 DAAKLLSQYIDQFKWTD-NESVLDVGCGPGNVTSKLLLPNLP---KSVV---KLVGLDVSPNMIKHAKNHHTNPKLEFVV 89 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~~~-~~~VLDIGcG~G~~~~~~l~~~~~---~~~~---~v~gvDiS~~~l~~A~~~~~~~~i~~~~ 89 (433)
.+.+++ ++-+.+.+-. -.|++|+++.+|.|+..+-+++.. ..+. .++++|+.+-+ ..+++.-++
T Consensus 25 SAFKLl-qideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI~GV~qlq 95 (294)
T KOG1099|consen 25 SAFKLL-QIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PIEGVIQLQ 95 (294)
T ss_pred hHHHHh-hhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------ccCceEEee
Confidence 344444 3344444333 458999999999999444333332 1112 39999987632 447888899
Q ss_pred ecccCCcccc-----cccCcEeEEEEcc-----cccchhh------HHHHHHHHHHhccCCCEEEEEec
Q psy11646 90 ANIADQNLES-----IFLAKFNKIFSFY-----CLHWVQD------QRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 90 ~Di~~~~l~~-----~~~~~fD~Vis~~-----~l~~~~d------~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
+||+.....+ +..++.|+|+|-+ .+|.+.+ ...++.-...+|+|||.++.-.+
T Consensus 96 ~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 96 GDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred cccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 9998754322 2336889999965 4666643 23557777789999999876443
No 278
>KOG1596|consensus
Probab=95.76 E-value=0.055 Score=50.34 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=69.2
Q ss_pred HHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHH----HHHHHHhhcCCCCeEEEEecccCCcccc-c
Q psy11646 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN----MIKHAKNHHTNPKLEFVVANIADQNLES-I 100 (433)
Q Consensus 26 ~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~----~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~ 100 (433)
++.+..+|+.+||-+|+++|... ........+. .-|++++.|.. .+..|+++ +||--+.-|+... ..- -
T Consensus 149 vdnihikpGsKVLYLGAasGttV-SHvSDiVGpe-G~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP-~KYRm 222 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTV-SHVSDIVGPE-GCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHP-AKYRM 222 (317)
T ss_pred ccceeecCCceEEEeeccCCcee-ehhhcccCCC-ceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCc-hheee
Confidence 35566789999999999999876 3344443333 38999999874 44455555 5666566676532 110 1
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+-.-.|+|++--. .......+.-|....||+||.+++..
T Consensus 223 lVgmVDvIFaDva--qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 223 LVGMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeeeEEEEeccCC--CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 1134677766332 11223455778899999999999875
No 279
>KOG4058|consensus
Probab=95.50 E-value=0.034 Score=47.77 Aligned_cols=110 Identities=13% Similarity=0.249 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEeccc
Q psy11646 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIA 93 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~ 93 (433)
..+-++.++..+..++..+.+|+|+|.|...... ++ .+...-+|++++|-.+.+++-+. ....+.|..-|+-
T Consensus 57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaa-ar---~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAA-AR---CGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLW 132 (199)
T ss_pred cHHHHHHHHHHccCCCCCcEEeccCCCceeehhh-hh---hCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhh
Confidence 3345566677777777789999999999987332 22 12246799999999999888766 3466778888876
Q ss_pred CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
...+. .|..|+.+.+-.-++|.+ ..+..-++.+..++.
T Consensus 133 K~dl~-----dy~~vviFgaes~m~dLe---~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 133 KVDLR-----DYRNVVIFGAESVMPDLE---DKLRTELPANTRVVA 170 (199)
T ss_pred hcccc-----ccceEEEeehHHHHhhhH---HHHHhhCcCCCeEEE
Confidence 65443 355555555533333333 233334555655543
No 280
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.46 E-value=0.11 Score=54.54 Aligned_cols=121 Identities=15% Similarity=0.221 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCC--CcEEEEEeCCHHHHHHHHhhc---CCC-CeEEEEeccc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKS--VVKLVGLDVSPNMIKHAKNHH---TNP-KLEFVVANIA 93 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~--~~~v~gvDiS~~~l~~A~~~~---~~~-~i~~~~~Di~ 93 (433)
.+.+.+++.+...+..+|.|-.||+|.+...... .+... ...++|.|+++.....|+-+. +.. .+....+|-.
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~-~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAK-YLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHH-HHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence 3444455555556777999999999998744433 22211 147999999999999999988 222 2344444443
Q ss_pred CCcccc--cccCcEeEEEEccccc---chh----------------------hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 94 DQNLES--IFLAKFNKIFSFYCLH---WVQ----------------------DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 94 ~~~l~~--~~~~~fD~Vis~~~l~---~~~----------------------d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..+... ...+.||.|+++..+. |.. .....+..+...|+|||+..++.
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 333221 2347799999987664 111 01456788888899888666554
No 281
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.46 E-value=0.023 Score=51.99 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 16 ~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
+.+.++++.-+..+.-..+.++.|-+||+|.+. ..+.-+.+.....++|.|+++++++.|++++
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLL-TVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLL-TVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHH-HHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHH-HHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 456667776666665556779999999999987 4544444444458999999999999999987
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.85 E-value=0.049 Score=55.96 Aligned_cols=94 Identities=15% Similarity=0.253 Sum_probs=57.6
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHH----HHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN----MIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~----~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
..|+|..+|.|.++ +.|.. . .|+.+..-|. -+...-.+ ++-=...|..+. ++ ..+.+||+|.+
T Consensus 367 RNVMDMnAg~GGFA-AAL~~---~---~VWVMNVVP~~~~ntL~vIydR----GLIG~yhDWCE~-fs-TYPRTYDLlHA 433 (506)
T PF03141_consen 367 RNVMDMNAGYGGFA-AALID---D---PVWVMNVVPVSGPNTLPVIYDR----GLIGVYHDWCEA-FS-TYPRTYDLLHA 433 (506)
T ss_pred eeeeeecccccHHH-HHhcc---C---CceEEEecccCCCCcchhhhhc----ccchhccchhhc-cC-CCCcchhheeh
Confidence 46999999999999 44442 1 2444433332 12111111 111112233221 22 22388999999
Q ss_pred cccccchh---hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 111 FYCLHWVQ---DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 111 ~~~l~~~~---d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
...+.... +.+.++-++-|+|||||.+++-+
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 98887654 46788999999999999998854
No 283
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.81 E-value=0.13 Score=47.76 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CC----CCeEEEEecccCCcccc--cccCcE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TN----PKLEFVVANIADQNLES--IFLAKF 105 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~----~~i~~~~~Di~~~~l~~--~~~~~f 105 (433)
++.++||||.|.-+.- .++-.. .-+++.+|.|+++..++.|+... .+ ..++.....=.+.-++. ...+.|
T Consensus 78 ~~i~~LDIGvGAnCIY-PliG~~--eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIY-PLIGVH--EYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCccccc-ccccce--eecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence 5668999999987764 443321 22478999999999999999877 22 23444333222211222 224889
Q ss_pred eEEEEcccccch
Q psy11646 106 NKIFSFYCLHWV 117 (433)
Q Consensus 106 D~Vis~~~l~~~ 117 (433)
|.++|+..+|..
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999999954
No 284
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.78 E-value=0.021 Score=46.73 Aligned_cols=37 Identities=27% Similarity=0.680 Sum_probs=30.0
Q ss_pred cEeEEEEcccccchh------hHHHHHHHHHHhccCCCEEEEE
Q psy11646 104 KFNKIFSFYCLHWVQ------DQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~------d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+||+|+|..+.-|+. ....+++.+++.|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999999887763 2567899999999999998874
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.73 E-value=0.17 Score=49.98 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=65.3
Q ss_pred cCCCCCCEEEEECCC-CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeE
Q psy11646 29 FKWTDNESVLDVGCG-PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 29 l~~~~~~~VLDIGcG-~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
...+||.+|+=+|+| .|..+..+++.. + .+|+++|.|++-++.|++.- .-.++... .....+. ..+.||+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~---g-a~Via~~~~~~K~e~a~~lG---Ad~~i~~~-~~~~~~~-~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM---G-AEVIAITRSEEKLELAKKLG---ADHVINSS-DSDALEA-VKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc---C-CeEEEEeCChHHHHHHHHhC---CcEEEEcC-CchhhHH-hHhhCcE
Confidence 455789999999888 234443333322 2 59999999999999999873 22333322 1211221 1134999
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
|+..-. . ..+....+.|++||++++....
T Consensus 233 ii~tv~-~------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-P------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-h------hhHHHHHHHHhcCCEEEEECCC
Confidence 988666 3 3567778999999999998654
No 286
>KOG2798|consensus
Probab=94.62 E-value=0.12 Score=49.95 Aligned_cols=38 Identities=21% Similarity=0.493 Sum_probs=33.4
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+.||+|+.++.+....+.-..+..|.++|+|||+.+-.
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEec
Confidence 57999999988888888899999999999999987643
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.59 E-value=0.13 Score=52.16 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=66.2
Q ss_pred hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-C--ccccc-cc
Q psy11646 28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-Q--NLESI-FL 102 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~--~l~~~-~~ 102 (433)
.....++.+||.+|||. |..+..++. ..+. .+++++|.+++.++.+++... ..++...-.+ . .+... ..
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~-~~g~--~~vi~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAK-LLGA--ERVIAIDRVPERLEMARSHLG---AETINFEEVDDVVEALRELTGG 252 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHH-HcCC--CEEEEEcCCHHHHHHHHHcCC---cEEEcCCcchHHHHHHHHHcCC
Confidence 34456788999999887 666644433 3322 369999999999999988632 2222111110 0 01111 11
Q ss_pred CcEeEEEEcccc---------------cchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 103 AKFNKIFSFYCL---------------HWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 103 ~~fD~Vis~~~l---------------~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..+|+|+-.-.- +...+....+.++.+.++++|++++..
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 368988875321 111344667889999999999998763
No 288
>KOG2539|consensus
Probab=94.28 E-value=0.13 Score=52.32 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC--CCeEEEEec--ccCCcccccccCcEeEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--PKLEFVVAN--IADQNLESIFLAKFNKI 108 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~--~~i~~~~~D--i~~~~l~~~~~~~fD~V 108 (433)
..+.+.|+|.|.|.-. .++...++.....++.||.|..|.........+ ..-....-. .....++......||+|
T Consensus 200 ~pd~~~dfgsg~~~~~-~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGG-WAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccch-hhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 4667899998888765 444444444335799999999999998887621 111111111 11111222233669999
Q ss_pred EEcccccchhhH---HHHHH-HHHHhccCCCEEEEEeccCCc
Q psy11646 109 FSFYCLHWVQDQ---RQAIS-NIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 109 is~~~l~~~~d~---~~~l~-~i~~~LkpGG~lll~~~~~~p 146 (433)
++.+.+++..+. ..+.+ -.++..++||.+++...+..-
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 999999988653 23333 345567899999998765443
No 289
>KOG0024|consensus
Probab=94.07 E-value=0.31 Score=47.49 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=70.5
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEec--ccC--Ccccc-cc
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN--IAD--QNLES-IF 101 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~D--i~~--~~l~~-~~ 101 (433)
.+-..++|.+||=+|+|+=.+..-+.++.... .+|+.+|+++..++.|++ ++...+...... +.. ..... ..
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA--~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA--SDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCC--CcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhcc
Confidence 34445789999999999866654555655544 499999999999999999 532222211110 000 00111 11
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN 145 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~ 145 (433)
...+|+.+....++ ..++.....+++||.++++..+..
T Consensus 240 ~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 240 KKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 24588888776654 345666789999999888765544
No 290
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=93.92 E-value=0.17 Score=45.70 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc-----ccccCc
Q psy11646 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE-----SIFLAK 104 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-----~~~~~~ 104 (433)
..+++.+|||+|||+|.++..+++...+. .+++++|+|+.+ . ..++++.++|+.+.... ....++
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~--~~v~~vDis~~~------~--~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGK--GRVIAVDLQPMK------P--IENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCC--ceEEEEeccccc------c--CCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 34689999999999999984444433233 389999999865 1 14688888998764311 122367
Q ss_pred EeEEEEcccc--------cch---hhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646 105 FNKIFSFYCL--------HWV---QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE 152 (433)
Q Consensus 105 fD~Vis~~~l--------~~~---~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~ 152 (433)
||+|++..+. ++. .+.+.++.++.++|+|||++++.........+.+.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~ 157 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN 157 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHH
Confidence 9999986432 222 12467899999999999999986544444444443
No 291
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.90 E-value=1.1 Score=41.49 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=70.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEEEecccCCcc
Q psy11646 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFVVANIADQNL 97 (433)
Q Consensus 22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~~~Di~~~~l 97 (433)
|..+++.+ +.+.++.||||--|.+...++.. .+. ..+++.|+++..++.|.+++ ...+++...+|-... +
T Consensus 7 L~~va~~V--~~~~~iaDIGsDHAYLp~~Lv~~-~~~--~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~-l 80 (226)
T COG2384 7 LTTVANLV--KQGARIADIGSDHAYLPIYLVKN-NPA--STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV-L 80 (226)
T ss_pred HHHHHHHH--HcCCceeeccCchhHhHHHHHhc-CCc--ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc-c
Confidence 44555554 34667999999999999555543 222 48999999999999999988 235677777775221 2
Q ss_pred cccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 98 ~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
. .+..+|.|+..++=-. -....+.+-.+.|+.=-++++
T Consensus 81 ~--~~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 81 E--LEDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred C--ccCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEE
Confidence 2 2347898887665221 234455666666653334554
No 292
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.60 E-value=0.45 Score=48.11 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---C-CC-CeEEEEecccCCcccccccCcEeE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---T-NP-KLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~-~~-~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.+.+|||.=+|+|-=+.+++...- +..+|+.-|+|+.+++..+++. + .. .+++...|+... +. .....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~--~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-l~-~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELA--GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-LY-SRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-S--SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH-HC-HSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcC--CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH-hh-hccccCCE
Confidence 456899999999998878876532 2258999999999999999997 2 22 578888887664 21 12378999
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|=.-. ...+...+....+.++.||.+.++.
T Consensus 125 IDlDP----fGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDP----FGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC----CCCccHhHHHHHHHhhcCCEEEEec
Confidence 85421 1345678888999999999999874
No 293
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.43 E-value=0.39 Score=45.69 Aligned_cols=77 Identities=10% Similarity=0.186 Sum_probs=48.9
Q ss_pred CCEEEEECCCCChhHHHHhcccCCC-----CCcEEEEEeCCHHHHHHHHhhcCC---------CCeEEEEecccCCcccc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPK-----SVVKLVGLDVSPNMIKHAKNHHTN---------PKLEFVVANIADQNLES 99 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~-----~~~~v~gvDiS~~~l~~A~~~~~~---------~~i~~~~~Di~~~~l~~ 99 (433)
..+|+|+|+|+|.++..+|...... ...+|+.+|+|+.+.+.-++++.. .++.+ ..++...+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 4799999999999997776644322 125899999999999888888722 23444 22332211
Q ss_pred cccCcEeEEEEcccccchh
Q psy11646 100 IFLAKFNKIFSFYCLHWVQ 118 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~ 118 (433)
..-+|+++..+..++
T Consensus 95 ----~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 ----FPGFIIANELFDALP 109 (252)
T ss_dssp ----CCEEEEEESSGGGS-
T ss_pred ----CCEEEEEeeehhcCc
Confidence 345777877776654
No 294
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.41 E-value=0.22 Score=45.90 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~ 78 (433)
..+++.++.... .+|+.|||.=||+|+.+..... +. -+++|+|+++..++.|++
T Consensus 178 ~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~--l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEE--LG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHH--TT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh-ccceeeehhhhccChHHHHHHH--cC---CeEEEEeCCHHHHHHhcC
Confidence 466777776653 6799999999999998733322 22 389999999999999875
No 295
>PRK11524 putative methyltransferase; Provisional
Probab=93.40 E-value=0.21 Score=48.49 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
..+++.++.... .+|+.|||-=||+|+.+ .++. .+. -+++|+|++++.++.|++++
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~-~AA~-~lg---R~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTG-AVAK-ASG---RKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHH-HHHH-HcC---CCEEEEeCCHHHHHHHHHHH
Confidence 467777777664 68999999999999987 3333 222 38999999999999999996
No 296
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.40 E-value=0.42 Score=47.90 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEec-ccCCcccccccCcEeEEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN-IADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~D-i~~~~l~~~~~~~fD~Vis 110 (433)
.++.+|+=+|||+=.+....+++..+. .+++.+|.++.-++.|++......+.....+ .............+|+++-
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga--~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGA--SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIE 244 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence 445599999999866654555555444 4999999999999999986522211111111 0000000001136999987
Q ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
.-. ...++..+.++++|||.+.+....
T Consensus 245 ~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 245 AVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 666 234788899999999999987544
No 297
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=0.047 Score=47.41 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=42.6
Q ss_pred cccCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEeccCCchhhHHH
Q psy11646 100 IFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE 152 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~ 152 (433)
+.+++.|+|.+-++++|+. .-..+++++++.|||||.+-++.+...-....|+
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~ 97 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQ 97 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHh
Confidence 3348999999999999985 4567899999999999999999877655444443
No 298
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=1.5 Score=41.27 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCC-cEEEEEeCCHHHHHHHHhhc--CCCC--eEEEEecccCCcccccccCc-E
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSV-VKLVGLDVSPNMIKHAKNHH--TNPK--LEFVVANIADQNLESIFLAK-F 105 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~-~~v~gvDiS~~~l~~A~~~~--~~~~--i~~~~~Di~~~~l~~~~~~~-f 105 (433)
..+...+|+|+|+..-+..++....+.+. .+++.+|+|...++...+.. ..+. +.-+++|.+.. +....... =
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~-La~~~~~~~R 155 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELA-LAELPRGGRR 155 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHH-HhcccCCCeE
Confidence 34778999999999998555554443332 58999999999987755544 2333 44455665432 22222122 2
Q ss_pred eEEEEcccccch--hhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~~~--~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
=.++....+-.+ .+...++..+...|+||-.+++..
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 223333344433 345678999999999999988864
No 299
>KOG1562|consensus
Probab=92.68 E-value=0.56 Score=45.17 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=74.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------CCCCeEEEEecccCCcccccccC
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------TNPKLEFVVANIADQNLESIFLA 103 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~~~~i~~~~~Di~~~~l~~~~~~ 103 (433)
+...++||=||-|.|.+.+..+. . .....++-+|+....++..++-+ ..+++.+..+|-... +.....+
T Consensus 119 ~~npkkvlVVgggDggvlrevik-H--~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f-l~~~~~~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIK-H--KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF-LEDLKEN 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeec-c--ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH-HHHhccC
Confidence 34578999999999999844443 3 23358999999998888887765 357888888875432 2222348
Q ss_pred cEeEEEEcc--cccchhh--HHHHHHHHHHhccCCCEEEEEe
Q psy11646 104 KFNKIFSFY--CLHWVQD--QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 104 ~fD~Vis~~--~l~~~~d--~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.||+|+.-- ..--... .+..+..+.+.||+||+++...
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 899998632 1111111 3567888999999999988764
No 300
>PHA01634 hypothetical protein
Probab=92.61 E-value=0.58 Score=39.41 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=37.0
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
.+.+|+|||++-|..+.-++. .+...|++++.++...+..+++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l----~GAK~Vva~E~~~kl~k~~een~ 71 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL----RGASFVVQYEKEEKLRKKWEEVC 71 (156)
T ss_pred cCCEEEEecCCccchhhHHhh----cCccEEEEeccCHHHHHHHHHHh
Confidence 588999999999998855554 34468999999999999998876
No 301
>KOG2920|consensus
Probab=92.33 E-value=0.093 Score=50.18 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=59.6
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------C---CCCeE---EEEecccCCccc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------T---NPKLE---FVVANIADQNLE 98 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~---~~~i~---~~~~Di~~~~l~ 98 (433)
..+.+|||+|||+|--...+.. .+...+...|.+...++.-.--. . ...-. ....+..+..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~----~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~- 189 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFV----KGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVF- 189 (282)
T ss_pred ecCceeEecCCcccccchhhhh----hccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchh-
Confidence 4689999999999987644333 22247788888877663211000 0 00000 11110001000
Q ss_pred ccccC--cEeEEEEcccccchhhHHHH-HHHHHHhccCCCEEEEE
Q psy11646 99 SIFLA--KFNKIFSFYCLHWVQDQRQA-ISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 99 ~~~~~--~fD~Vis~~~l~~~~d~~~~-l~~i~~~LkpGG~lll~ 140 (433)
...+ .||+|.+...++........ ......+++++|.++++
T Consensus 190 -~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 190 -NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred -hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 0113 78999998888877666655 66667788889987764
No 302
>KOG0822|consensus
Probab=92.25 E-value=0.37 Score=49.85 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCEEEEECCCCChhHHHHhcccCC-CCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLP-KSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~-~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
...|+-+|+|-|-+....++.... ..-.++++++-+|.++...+.+- ...+++++..|+...+.+ .++.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP---REQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc---hhhccchH
Confidence 446889999999887555543211 12258999999999988776643 567899999999987643 26789888
Q ss_pred Ec--ccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646 110 SF--YCLHWVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 110 s~--~~l~~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
+- +.+..-+--...+.-+.+.|||+|..+=
T Consensus 445 SELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 445 SELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 62 2222212235678888999999987654
No 303
>KOG3924|consensus
Probab=91.97 E-value=0.46 Score=47.47 Aligned_cols=126 Identities=14% Similarity=0.143 Sum_probs=81.1
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----------
Q psy11646 11 NSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---------- 80 (433)
Q Consensus 11 ~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---------- 80 (433)
+..........+..+.+.+...+++...|+|+|-|... .+++..... ..-+|+++....-+.|..+.
T Consensus 170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv-~~~aa~a~~--k~svG~eim~~pS~~a~~~~~~~kk~~k~f 246 (419)
T KOG3924|consen 170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLV-CFVAAYAGC--KKSVGFEIMDKPSQCAELNKEEFKKLMKHF 246 (419)
T ss_pred ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhh-HHHHHhhcc--ccccceeeecCcHHHHHHHHHHHHHHHHHh
Confidence 33444455566677888888899999999999999987 444433222 35577776554444333221
Q ss_pred C--CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 81 T--NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 81 ~--~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+ ...++.++++......-.......++|+++++....+. ..-+.++..-+++|-+++-.
T Consensus 247 Gk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L-~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 247 GKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPEL-KLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred CCCcCceeecccccCCHHHHHHHhhcceEEEEecccCCHHH-HHhhHHHHhhCCCcceEecc
Confidence 1 24567777777654333334467899999988765433 33345888899999987743
No 304
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.90 E-value=0.68 Score=45.10 Aligned_cols=107 Identities=12% Similarity=0.210 Sum_probs=68.1
Q ss_pred CEEEEECCCCChhHHHHhcccC--------C----------CCCcEEEEEeCCHH--HHHHHHhhc--------------
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNL--------P----------KSVVKLVGLDVSPN--MIKHAKNHH-------------- 80 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~--------~----------~~~~~v~gvDiS~~--~l~~A~~~~-------------- 80 (433)
.+||.||.|.|.-...+ +..+ + .....++.+||.+- .+.......
T Consensus 88 ~~VlCIGGGAGAElVAl-Aa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVAL-AAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred ceEEEECCChHHHHHHH-HHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 69999999998654233 2222 1 01148999999653 233222222
Q ss_pred ------CCCCeEEEEecccCCccccc---cc-CcEeEEEEcccccch-----hhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 81 ------TNPKLEFVVANIADQNLESI---FL-AKFNKIFSFYCLHWV-----QDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 81 ------~~~~i~~~~~Di~~~~l~~~---~~-~~fD~Vis~~~l~~~-----~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
..-++.|.+.|+.....++. .. ...++|...++++.+ ...-+++.++-..++||-.+++++.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 11257899999877644321 11 257888888877644 3345678999999999999988763
No 305
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.71 E-value=0.3 Score=42.81 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=61.4
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHH-HHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH-AKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~-A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
+++.+=+|+..-+.-...++ .+..++..++.++--++. .+.+. .++...|.... . ....++||.+.|..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~----~GA~~iltveyn~L~i~~~~~dr~----ssi~p~df~~~-~-~~y~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ----HGAAKILTVEYNKLEIQEEFRDRL----SSILPVDFAKN-W-QKYAGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCCchhhHHHHH----cCCceEEEEeecccccCccccccc----ccccHHHHHHH-H-HHhhccchhhheec
Confidence 56788898887766533333 344578888876421110 11110 11111222111 1 01237899999999
Q ss_pred cccchh-----h------HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 113 CLHWVQ-----D------QRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 113 ~l~~~~-----d------~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
+++|.. | ...++.++.++|||||.+++..+..
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 998872 2 3568899999999999999987654
No 306
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.36 E-value=0.31 Score=39.73 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCC
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVS 69 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS 69 (433)
+....+|||||.|-+. .+|.. .| ..=.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV-~IL~~---EG-y~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLV-YILNS---EG-YPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHH-HHHHh---CC-CCccccccc
Confidence 5668999999999998 66653 23 345788753
No 307
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.26 E-value=1.4 Score=46.24 Aligned_cols=103 Identities=13% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---------cccc--
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---------LESI-- 100 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---------l~~~-- 100 (433)
.++.+|+=+|||.=.......++.. + .+|+++|.+++.++.+++. +.++...+..+.. ....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--G-A~V~a~D~~~~rle~aesl----GA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL--G-AIVRAFDTRPEVAEQVESM----GAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC--C-CEEEEEeCCHHHHHHHHHc----CCeEEEeccccccccccchhhhcchhHH
Confidence 4789999999998666533444332 2 4899999999999999874 3333333221100 0000
Q ss_pred -------c--cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 101 -------F--LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 101 -------~--~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
. ...+|+|+..-....-+.+....++..+.+||||.++...
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 0 1358999987765433334334589999999999988764
No 308
>PRK13699 putative methylase; Provisional
Probab=90.92 E-value=0.71 Score=43.28 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
.+++.++.... .+|+.|||-=||+|+.+. .+.. . + .+++|+|+++...+.|.+++
T Consensus 151 ~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~-aa~~-~--~-r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 151 TSLQPLIESFT-HPNAIVLDPFAGSGSTCV-AALQ-S--G-RRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred HHHHHHHHHhC-CCCCEEEeCCCCCCHHHH-HHHH-c--C-CCEEEEecCHHHHHHHHHHH
Confidence 56666666544 579999999999999873 3332 1 2 47999999999999999887
No 309
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.89 E-value=0.43 Score=44.73 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=47.1
Q ss_pred HHHhcCCCCC--CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc------CC------CCeEEEEe
Q psy11646 25 YIDQFKWTDN--ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH------TN------PKLEFVVA 90 (433)
Q Consensus 25 l~~~l~~~~~--~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~------~~------~~i~~~~~ 90 (433)
+++....+++ .+|||.-+|-|..+ .+++.. | .+|++++-||-+....+.-+ .. .+++++.+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da-~vlA~~---G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDA-FVLASL---G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHH-HHHHHH---T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHH-HHHHcc---C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4444555554 48999999999998 455532 2 48999999997765544322 11 37899999
Q ss_pred cccCCcccccccCcEeEEEEcccccc
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHW 116 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~ 116 (433)
|..+. +. ....+||+|..-.++.+
T Consensus 140 d~~~~-L~-~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEY-LR-QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCH-CC-CHSS--SEEEE--S---
T ss_pred CHHHH-Hh-hcCCCCCEEEECCCCCC
Confidence 98764 33 34589999999777765
No 310
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=90.47 E-value=1 Score=44.66 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=42.0
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhccc---CCC--CCcEEEEEeCCHHHHHHHHhhc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPN---LPK--SVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~---~~~--~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
+....+..+....++|+|+|.|.+...+|+.. .|. ...++..+++|+...+.-++++
T Consensus 68 ~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 68 QLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred HHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 34455555557789999999999987776644 221 1258999999999988877776
No 311
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=90.44 E-value=0.93 Score=43.77 Aligned_cols=72 Identities=8% Similarity=0.139 Sum_probs=51.2
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccccc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH 115 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~ 115 (433)
+|+|+-||.|..+..+ .. .+...+.++|+++.+++..+.++. .. ....|+.+....+. ...+|+++......
T Consensus 2 ~v~dLFsG~Gg~~~gl-~~---~G~~~v~a~e~~~~a~~~~~~N~~--~~-~~~~Di~~~~~~~~-~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGL-EK---AGFEIVAANEIDKSAAETYEANFP--NK-LIEGDITKIDEKDF-IPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHH-HH---cCCEEEEEEeCCHHHHHHHHHhCC--CC-CccCccccCchhhc-CCCCCEEEeCCCCh
Confidence 6999999999997433 32 233468999999999999999872 22 56678776432211 35699999877654
No 312
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=89.87 E-value=2.1 Score=44.39 Aligned_cols=92 Identities=23% Similarity=0.227 Sum_probs=57.9
Q ss_pred CceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCc-----------hhHHHHHHHHHHHHHHHHHhccCCCe
Q psy11646 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHD-----------LDEHLQGLLLIGALNITTFLLKPGGT 244 (433)
Q Consensus 176 gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~-----------~D~~~~~~L~~~al~ia~~~L~~gG~ 244 (433)
.+..+++|..... ..+. ..+|+|++|......|... .+......+....+..+..+|+|||.
T Consensus 302 ~v~~~~~D~~~~~------~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 374 (444)
T PRK14902 302 NIETKALDARKVH------EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGI 374 (444)
T ss_pred eEEEEeCCccccc------chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 4566777765421 1122 5699999996433233211 12223344566778889999999999
Q ss_pred EE---EEEeecCCHHHHHHHHhc--ccceeEEecC
Q psy11646 245 FV---GKIFRSRNVVCLETKFQI--FFENVSIAKP 274 (433)
Q Consensus 245 fv---~Kif~g~~~~~~~~~l~~--~F~~v~~~KP 274 (433)
+| |+++...+...+...++. .|+.+.+.+|
T Consensus 375 lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~ 409 (444)
T PRK14902 375 LVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHE 409 (444)
T ss_pred EEEEcCCCChhhhHHHHHHHHHhCCCcEEeccccc
Confidence 99 788888877766666665 3666555544
No 313
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.74 E-value=2 Score=42.72 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=80.4
Q ss_pred hhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--C-
Q psy11646 5 TLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--T- 81 (433)
Q Consensus 5 ~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~- 81 (433)
-.|+..-...|...-..+..+.+.. ..+|||-=+|+|.=+++++... +..+++.-|+||.+++.++++. .
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~~~----~~~v~DalsatGiRgIRya~E~---~~~~v~lNDisp~Avelik~Nv~~N~ 100 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGKLL----PKRVLDALSATGIRGIRYAVET---GVVKVVLNDISPKAVELIKENVRLNS 100 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhccC----CeEEeecccccchhHhhhhhhc---CccEEEEccCCHHHHHHHHHHHHhcC
Confidence 3444444444444444444433222 6789999999998887776532 2138999999999999999998 2
Q ss_pred CCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 82 ~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
.........|+... +.+ ....||+|=. .-...+...+....+..+.||.+.++.-...+
T Consensus 101 ~~~~~v~n~DAN~l-m~~-~~~~fd~IDi----DPFGSPaPFlDaA~~s~~~~G~l~vTATD~a~ 159 (380)
T COG1867 101 GEDAEVINKDANAL-LHE-LHRAFDVIDI----DPFGSPAPFLDAALRSVRRGGLLCVTATDTAP 159 (380)
T ss_pred cccceeecchHHHH-HHh-cCCCccEEec----CCCCCCchHHHHHHHHhhcCCEEEEEeccccc
Confidence 23444444565543 221 1256777633 11224556777778888889999887533333
No 314
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.64 E-value=4.1 Score=39.72 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=59.2
Q ss_pred CCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---ccccccCcE
Q psy11646 30 KWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---LESIFLAKF 105 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---l~~~~~~~f 105 (433)
...++.+||..|+|. |..+..++. . .+ .++++++.++...+.+++. + +.....+-.... ........+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~-~--~G-~~V~~~~~s~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAK-A--MG-AAVIAVDIKEEKLELAKEL-G---ADEVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-H--cC-CEEEEEcCCHHHHHHHHHh-C---CCEEEcCCCcCHHHHHHHhcCCCc
Confidence 356788999987653 455433333 2 22 5799999999999888653 1 222211111110 001123568
Q ss_pred eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+|+.+... ...++.+.+.|+++|.++...
T Consensus 234 D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 998865331 346778899999999988753
No 315
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.55 E-value=2 Score=42.58 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=57.8
Q ss_pred cCCCCCCEEEEECCCCChhHH--HHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc--cccCc
Q psy11646 29 FKWTDNESVLDVGCGPGNVTS--KLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES--IFLAK 104 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~--~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~--~~~~~ 104 (433)
....++.+||=.||| ..+. ..+++.. +..+++++|.+++.++.|++. +.. .+ .|..+..+.. ...+.
T Consensus 165 ~~~~~g~~VlV~G~G--~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~l-Ga~--~v--i~~~~~~~~~~~~~~g~ 235 (343)
T PRK09880 165 AGDLQGKRVFVSGVG--PIGCLIVAAVKTL--GAAEIVCADVSPRSLSLAREM-GAD--KL--VNPQNDDLDHYKAEKGY 235 (343)
T ss_pred cCCCCCCEEEEECCC--HHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHc-CCc--EE--ecCCcccHHHHhccCCC
Confidence 334578899988875 3331 2233322 323799999999999999874 211 11 1211111111 01135
Q ss_pred EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|+|+-.-.- ...+....+.|++||++++..
T Consensus 236 ~D~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 236 FDVSFEVSGH------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 8988765431 235677888999999988764
No 316
>PTZ00146 fibrillarin; Provisional
Probab=89.39 E-value=10 Score=36.90 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=46.5
Q ss_pred cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEe----
Q psy11646 175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIF---- 250 (433)
Q Consensus 175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif---- 250 (433)
+++..+.+|...+.... ... ..+|+|++|++. .|+... .+.-+.++|++||.|++++-
T Consensus 181 ~NI~~I~~Da~~p~~y~---~~~--~~vDvV~~Dva~-------pdq~~i------l~~na~r~LKpGG~~vI~ika~~i 242 (293)
T PTZ00146 181 PNIVPIIEDARYPQKYR---MLV--PMVDVIFADVAQ-------PDQARI------VALNAQYFLKNGGHFIISIKANCI 242 (293)
T ss_pred CCCEEEECCccChhhhh---ccc--CCCCEEEEeCCC-------cchHHH------HHHHHHHhccCCCEEEEEEecccc
Confidence 56777888876532211 111 269999999962 222211 11227788999999999632
Q ss_pred -ecCCHHHH----HHHHhcc-cceeEEec
Q psy11646 251 -RSRNVVCL----ETKFQIF-FENVSIAK 273 (433)
Q Consensus 251 -~g~~~~~~----~~~l~~~-F~~v~~~K 273 (433)
.+...+.. ...|+.. |+.+....
T Consensus 243 d~g~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 243 DSTAKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 33333333 2445543 77666654
No 317
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.93 E-value=11 Score=37.41 Aligned_cols=178 Identities=14% Similarity=0.194 Sum_probs=99.5
Q ss_pred HHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe----cccCCcccc
Q psy11646 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA----NIADQNLES 99 (433)
Q Consensus 24 ~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~----Di~~~~l~~ 99 (433)
...+..+.++|.+|.=+|||.=.++...-+... +..+++++|+++.-++.|++.- -.+++.. |+.+. ..+
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~a--gA~~IiAvD~~~~Kl~~A~~fG---AT~~vn~~~~~~vv~~-i~~ 249 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAA--GAGRIIAVDINPEKLELAKKFG---ATHFVNPKEVDDVVEA-IVE 249 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHc--CCceEEEEeCCHHHHHHHHhcC---CceeecchhhhhHHHH-HHH
Confidence 455666778999999999987666523323222 2359999999999999999863 2233221 11110 011
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCch---hhHHHhhhcCCCccccccceeeeeccccC
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI---YDLYEKLSRKPKWTEYTQVRTYRCLLFTG 176 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~---~~~~~~~~~~~~W~~~~~~r~~~m~pl~g 176 (433)
.-++-.|.++-. ..+ ..+++.....+.++|..++........ ....+. .....|...
T Consensus 250 ~T~gG~d~~~e~-----~G~-~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~l-v~gr~~~Gs------------- 309 (366)
T COG1062 250 LTDGGADYAFEC-----VGN-VEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQL-VTGRVWKGS------------- 309 (366)
T ss_pred hcCCCCCEEEEc-----cCC-HHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHe-eccceEEEE-------------
Confidence 111244554321 112 236777778888899988875432210 111111 111222221
Q ss_pred ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeE
Q psy11646 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTF 245 (433)
Q Consensus 177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~f 245 (433)
..|+........++..+... |.-.+|.+.+..+-+.-.|=|-..|+.|-.+
T Consensus 310 ---~~G~~~p~~diP~lv~~y~~---------------Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I 360 (366)
T COG1062 310 ---AFGGARPRSDIPRLVDLYMA---------------GKLPLDRLVTHTIPLEDINEAFDLMHEGKSI 360 (366)
T ss_pred ---eecCCccccchhHHHHHHHc---------------CCCchhHHhhccccHHHHHHHHHHHhCCcee
Confidence 23444555666777777654 3444577777666666677777777776543
No 318
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.64 E-value=10 Score=36.54 Aligned_cols=182 Identities=12% Similarity=0.119 Sum_probs=98.4
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEecccCC
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIADQ 95 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~~~ 95 (433)
+|-=||+|.=... ++......+ .+|+++|++++.++.++++. ... ++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~--ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 5 KIGVIGAGTMGNG--IAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred EEEEEccCHHHHH--HHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 5777888753332 111111133 58999999999987654321 001 2221 112111
Q ss_pred cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceee-eeccc
Q psy11646 96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTY-RCLLF 174 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~-~m~pl 174 (433)
....|+|+..-. ....-...+++++.+.++|+..+ .+....-+.......+.... ++..-+.. +..-.
T Consensus 80 ------~~~aDlVi~av~-e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~~~~~la~~~~~~~---r~ig~h~~~P~~~~ 148 (282)
T PRK05808 80 ------LKDADLVIEAAT-ENMDLKKKIFAQLDEIAKPEAIL-ATNTSSLSITELAAATKRPD---KVIGMHFFNPVPVM 148 (282)
T ss_pred ------hccCCeeeeccc-ccHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHHhhCCCc---ceEEeeccCCcccC
Confidence 145788877532 12222357888999999888755 33333333333333222111 11111111 01123
Q ss_pred cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
++++...+..++.++.+.+...+..-+...+..- +...+...++..+.++-|.+++..|
T Consensus 149 ~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~---------d~~g~i~~Ri~~~~~~ea~~~~~~g 207 (282)
T PRK05808 149 KLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK---------NAPGFVVNRILIPMINEAIFVLAEG 207 (282)
T ss_pred ccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEec---------CccChHHHHHHHHHHHHHHHHHHhC
Confidence 4666777788888888888777776665555542 2224667777777777777777666
No 319
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.41 E-value=3.4 Score=37.45 Aligned_cols=106 Identities=13% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCC--cEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----cccCcEe
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSV--VKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IFLAKFN 106 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~--~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~~~~fD 106 (433)
.+..|+|+|...|..+. +.+...-..+ .+|+++||+-..+..+... .++|.|++++-.+..... ...+.--
T Consensus 69 ~P~lvIE~Gs~~GGSal-~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--~p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 69 QPSLVIEFGSRHGGSAL-FFANMMISIGQPFKVLGVDIDIKPLDPAARE--VPDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred CCceeEeeccccCchhh-hhhHhHHhcCCCceEEEEecccCcCChhhhc--CCCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 45689999999998763 3332211112 5899999987765444332 378999999876543221 1112234
Q ss_pred EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+.++..+-|+.+..-+.++-...+|.-|-++++-+
T Consensus 146 IfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 146 IFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 44555667777777777888889999999888765
No 320
>PRK11524 putative methyltransferase; Provisional
Probab=85.22 E-value=1.2 Score=43.24 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=37.7
Q ss_pred CeEEEEecccCCcccccccCcEeEEEEcccccc----------------hhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 84 KLEFVVANIADQNLESIFLAKFNKIFSFYCLHW----------------VQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 84 ~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~----------------~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
...++++|..+. +....+++||+|++...+.- ..-....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~-l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTE-LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHH-HHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 445677777653 22233478999999655421 111356889999999999999885
No 321
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=85.04 E-value=7 Score=37.13 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=63.3
Q ss_pred HHHHHHhcC-CCCCCEEEEECCCCChhHHHH---hcccCCCCCcEEEEEeCCH--------------------------H
Q psy11646 22 LSQYIDQFK-WTDNESVLDVGCGPGNVTSKL---LLPNLPKSVVKLVGLDVSP--------------------------N 71 (433)
Q Consensus 22 l~~l~~~l~-~~~~~~VLDIGcG~G~~~~~~---l~~~~~~~~~~v~gvDiS~--------------------------~ 71 (433)
|.++++.+. ..-++.|+|+||-.|..+..+ ++.. ....-++++.|.-+ .
T Consensus 62 L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~-~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~ 140 (248)
T PF05711_consen 62 LYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAY-GNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAV 140 (248)
T ss_dssp HHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCT-TTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTH
T ss_pred HHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHh-CCCCCEEEEEeCCCCCCCCccccccccchhhhhhccccccc
Confidence 334444433 234568999999999866322 2222 11113677776421 2
Q ss_pred HHHHHHhhc-----CCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 72 MIKHAKNHH-----TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 72 ~l~~A~~~~-----~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
.++..++++ ...++.++.+.+.+. ++....+++-++..- ..+-+....+|..++..|.|||.+++-+.+.
T Consensus 141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dT-Lp~~p~~~IAll~lD--~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 141 SLEEVRENFARYGLLDDNVRFVKGWFPDT-LPDAPIERIALLHLD--CDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHCCCCTTTSSTTEEEEES-HHHH-CCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CHHHHHHHHHHcCCCcccEEEECCcchhh-hccCCCccEEEEEEe--ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 345556665 135799999998654 443223333222221 2223456788999999999999999876554
No 322
>KOG2651|consensus
Probab=84.91 E-value=3 Score=41.63 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=37.4
Q ss_pred HHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh
Q psy11646 22 LSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78 (433)
Q Consensus 22 l~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~ 78 (433)
+.+++..+.. .+-..|+|+|+|.|.++ .++.-. . +..|.+||-|....+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LS-r~lSl~--y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLS-RFLSLG--Y-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHH-HHHhhc--c-CceEEEeccchHHHHHHHH
Confidence 3444444433 34568999999999999 666522 2 2689999999888777754
No 323
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.18 E-value=21 Score=34.54 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=91.7
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEecccC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIAD 94 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~~ 94 (433)
.+|-=||+|.=... ++......+ .+|++.|.+++.++.++++. ... ++.+ ..+.+.
T Consensus 5 ~~V~vIG~G~mG~~--iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~ 80 (295)
T PLN02545 5 KKVGVVGAGQMGSG--IAQLAAAAG-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEE 80 (295)
T ss_pred CEEEEECCCHHHHH--HHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHH
Confidence 46777888753332 222222233 69999999999987655432 000 1111 111110
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeecc-
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLL- 173 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~p- 173 (433)
-...|+|+..-. ........++.++...++|+..++ +..+.-+............. +.. ...+.|
T Consensus 81 -------~~~aD~Vieav~-e~~~~k~~v~~~l~~~~~~~~il~-s~tS~i~~~~l~~~~~~~~r---~~g--~h~~~pp 146 (295)
T PLN02545 81 -------LRDADFIIEAIV-ESEDLKKKLFSELDRICKPSAILA-SNTSSISITRLASATQRPQQ---VIG--MHFMNPP 146 (295)
T ss_pred -------hCCCCEEEEcCc-cCHHHHHHHHHHHHhhCCCCcEEE-ECCCCCCHHHHHhhcCCCcc---eEE--EeccCCc
Confidence 134688887533 222234567888888888877543 22222233332222211111 111 111111
Q ss_pred --ccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646 174 --FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG 243 (433)
Q Consensus 174 --l~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG 243 (433)
.+.+..+.+.-++.+..+.+...+..-+-..++....| .+...++..+.++-|.+++..|.
T Consensus 147 ~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~---------g~i~nri~~~~~~ea~~~~~~gv 209 (295)
T PLN02545 147 PIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP---------GFIVNRILMPMINEAFYALYTGV 209 (295)
T ss_pred ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc---------cHHHHHHHHHHHHHHHHHHHcCC
Confidence 12344555556666666666666655444444432222 25677777777777777777764
No 324
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.06 E-value=6.8 Score=31.89 Aligned_cols=92 Identities=12% Similarity=0.175 Sum_probs=57.6
Q ss_pred CCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-cccCcEeEEEEcccccchhhH
Q psy11646 42 CGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFLAKFNKIFSFYCLHWVQDQ 120 (433)
Q Consensus 42 cG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~l~~~~d~ 120 (433)
||.|..+..++..+.. ....++.+|.+++.++.+++. .+.++.+|..+...-. ..-+..|.|++...-. ..
T Consensus 4 ~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~----~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d---~~ 75 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREE----GVEVIYGDATDPEVLERAGIEKADAVVILTDDD---EE 75 (116)
T ss_dssp ES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHT----TSEEEES-TTSHHHHHHTTGGCESEEEEESSSH---HH
T ss_pred EcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhc----ccccccccchhhhHHhhcCccccCEEEEccCCH---HH
Confidence 5667777555554444 435899999999999998875 4789999987643222 2236788777754411 12
Q ss_pred HHHHHHHHHhccCCCEEEEEe
Q psy11646 121 RQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 121 ~~~l~~i~~~LkpGG~lll~~ 141 (433)
...+....+-+.|...++...
T Consensus 76 n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 76 NLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEE
Confidence 223444556667777777654
No 325
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=83.82 E-value=3 Score=47.63 Aligned_cols=105 Identities=23% Similarity=0.267 Sum_probs=71.3
Q ss_pred HHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEee-cCC-HHHHHHHHhcccceeE
Q psy11646 193 IFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFR-SRN-VVCLETKFQIFFENVS 270 (433)
Q Consensus 193 il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~-g~~-~~~~~~~l~~~F~~v~ 270 (433)
+...+...-+.+|.||.---..|-.+++ .+.+++.+.++.+.+....||.+|+|+=- ... +..+..++...|..+.
T Consensus 561 l~~p~pTGtf~fVYSDVDQV~dg~~dl~--As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~ 638 (1289)
T PF06016_consen 561 LTRPFPTGTFTFVYSDVDQVQDGGDDLV--ASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYH 638 (1289)
T ss_dssp TTS--S---EEEEEEE-----SSTTTHH--HHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEE
T ss_pred eccCCCCCceEEEEecchhhccCCcchh--hhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceee
Confidence 4445666778999999988888877765 45677888899999999999999999944 444 6899999999999999
Q ss_pred EecCCCCcccccceeEEEeeccCCCCCCCCc
Q psy11646 271 IAKPKSSRNSSIESFIVCQNYRPPKDYVPTI 301 (433)
Q Consensus 271 ~~KP~~sr~~s~E~~~v~~~~~~~~~~~~~~ 301 (433)
++||-= .+|.|+|+|..+......+.|+.
T Consensus 639 ivKPlI--~NNvEvflv~~~~~~~~~~~~t~ 667 (1289)
T PF06016_consen 639 IVKPLI--VNNVEVFLVFGGRTPSGNLTPTT 667 (1289)
T ss_dssp EEEEES--SSS--EEEEECECSTT----BBH
T ss_pred Eeccee--ecceEEEEEEEeecCCCCCCCch
Confidence 999974 47899999955554566666643
No 326
>KOG0022|consensus
Probab=83.51 E-value=23 Score=34.75 Aligned_cols=179 Identities=17% Similarity=0.248 Sum_probs=100.1
Q ss_pred HHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe-cccCCcccc----
Q psy11646 25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA-NIADQNLES---- 99 (433)
Q Consensus 25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~-Di~~~~l~~---- 99 (433)
..+..+..||.+|.=+|+|.=.++...-++. .+..+++|+|++++-.+.|++.- -.+++.- |... +..+
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka--~GAsrIIgvDiN~~Kf~~ak~fG---aTe~iNp~d~~~-~i~evi~E 257 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKA--AGASRIIGVDINPDKFEKAKEFG---ATEFINPKDLKK-PIQEVIIE 257 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHh--cCcccEEEEecCHHHHHHHHhcC---cceecChhhccc-cHHHHHHH
Confidence 3444556789999999998877664444443 33469999999999999999763 2222211 2222 1111
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEeccCCc--hhhHHHhhhcCCCccccccceeeeeccccC
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLLNAFNP--IYDLYEKLSRKPKWTEYTQVRTYRCLLFTG 176 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~~~~~p--~~~~~~~~~~~~~W~~~~~~r~~~m~pl~g 176 (433)
.-++.+|.-+- ++- ...++++.....+.| |.-++......+ +.-....+.....|..-.
T Consensus 258 mTdgGvDysfE--c~G----~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~------------ 319 (375)
T KOG0022|consen 258 MTDGGVDYSFE--CIG----NVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSA------------ 319 (375)
T ss_pred HhcCCceEEEE--ecC----CHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEe------------
Confidence 11244554332 221 234566666777777 776665433222 000000111111221111
Q ss_pred ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEE
Q psy11646 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFV 246 (433)
Q Consensus 177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv 246 (433)
-|-+........+....-. +.-++|++..++|-..-.+=|-.+|..|-++-
T Consensus 320 ----FGG~K~~~~iP~lV~~y~~---------------~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR 370 (375)
T KOG0022|consen 320 ----FGGFKSKSDIPKLVKDYMK---------------KKLNLDEFITHELPFEEINKAFDLLHEGKSIR 370 (375)
T ss_pred ----cccccchhhhhHHHHHHHh---------------CccchhhhhhcccCHHHHHHHHHHHhCCceEE
Confidence 2223333444555544433 34557999999999999999999999987763
No 327
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=83.49 E-value=5.8 Score=37.00 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=57.6
Q ss_pred CCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc----cccCcEe
Q psy11646 32 TDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES----IFLAKFN 106 (433)
Q Consensus 32 ~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~----~~~~~fD 106 (433)
.++.+||-.|+|+ |..+..++. . .+ .++++++.++...+.+++.. . ..+ .+........ ...+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~-~--~g-~~v~~~~~~~~~~~~~~~~g-~--~~~--~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAK-A--AG-ARVIVTDRSDEKLELAKELG-A--DHV--IDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H--cC-CeEEEEcCCHHHHHHHHHhC-C--cee--ccCCcCCHHHHHHHhcCCCCC
Confidence 6788999999986 444433332 2 22 58999999998888886542 1 111 1111111110 1125689
Q ss_pred EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+++.+..- ...+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVGG------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCCC------HHHHHHHHHhcccCCEEEEEc
Confidence 99865432 135667788999999988754
No 328
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=83.39 E-value=2.7 Score=41.01 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=50.1
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccccc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH 115 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~ 115 (433)
+++|+=||.|.++..+ .. .++..+.++|+++.+.+.-+.++. .....|+.......... .+|+++......
T Consensus 2 ~~~dlFsG~Gg~~~g~-~~---ag~~~~~a~e~~~~a~~~y~~N~~----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGL-EQ---AGFEVVWAVEIDPDACETYKANFP----EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHH-HH---TTEEEEEEEESSHHHHHHHHHHHT----EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHH-Hh---cCcEEEEEeecCHHHHHhhhhccc----ccccccccccccccccc-cceEEEeccCCc
Confidence 7999999999998444 32 334578999999999999999873 88889998865333332 599999865543
No 329
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.14 E-value=27 Score=33.86 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=99.7
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEecccC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIAD 94 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~~ 94 (433)
.+|-=||+|+-....... .. ..+.+|+..|.+++.++.++++. ... ++++ ..|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~--~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEV--CA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHH--HH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH
Confidence 378888988644432221 11 22379999999999998866553 001 1111 112211
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhc-cCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeee-ec
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLL-MPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYR-CL 172 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~L-kpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~-m~ 172 (433)
-...|+|+-. +.+..+-...++..+.+.+ +|+..+ .+..+..+............. +..-+... ..
T Consensus 82 -------~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il-~snTS~~~~~~la~~~~~~~r---~~g~hf~~P~~ 149 (286)
T PRK07819 82 -------FADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVL-ASNTSSIPIMKLAAATKRPGR---VLGLHFFNPVP 149 (286)
T ss_pred -------hCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHhhcCCCcc---EEEEecCCCcc
Confidence 1456888775 3333444556788888888 666544 333333344333332221111 11111111 12
Q ss_pred cccCceEEEccccccchHHHHHHhcCC-CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646 173 LFTGVIQVQGDITKESTIKEIFSHFDD-EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG 243 (433)
Q Consensus 173 pl~gv~~iqgDi~~~~t~~~il~~~~~-~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG 243 (433)
-.+.++.+.+..+++.+...+...+.. -+-..++.. +...+...++..+.++-|.++|..|-
T Consensus 150 ~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~---------d~pGfi~nRi~~~~~~Ea~~ll~eGv 212 (286)
T PRK07819 150 VLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQ---------DRSGFVVNALLVPYLLSAIRMVESGF 212 (286)
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEec---------CCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 235667888888888888877777442 222233222 22346667777777777778777663
No 330
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=82.95 E-value=6.7 Score=38.97 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeC---CHHHHHHHHhhcCCCCeEEEEecccCCccc-ccccCcE
Q psy11646 31 WTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDV---SPNMIKHAKNHHTNPKLEFVVANIADQNLE-SIFLAKF 105 (433)
Q Consensus 31 ~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDi---S~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-~~~~~~f 105 (433)
..++.+||=+|+|. |..+ ..+++.. + .++++++. ++.-++.+++. + ...+ +..+.... ......+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a-~q~ak~~--G-~~vi~~~~~~~~~~~~~~~~~~-G---a~~v--~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLA-ALLLRLR--G-FEVYVLNRRDPPDPKADIVEEL-G---ATYV--NSSKTPVAEVKLVGEF 239 (355)
T ss_pred cCCCCEEEEECCCHHHHHH-HHHHHHc--C-CeEEEEecCCCCHHHHHHHHHc-C---CEEe--cCCccchhhhhhcCCC
Confidence 35788999998754 2233 2233322 3 47999986 67888888754 2 2221 21111110 0012468
Q ss_pred eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+|+-.-.- ...+....+.|++||.+++..
T Consensus 240 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEATGV------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEECcCC------HHHHHHHHHHccCCcEEEEEe
Confidence 888875541 235677889999999987754
No 331
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.24 E-value=2.9 Score=42.28 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEeccC
Q psy11646 71 NMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLLNAF 144 (433)
Q Consensus 71 ~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~~~~ 144 (433)
+..+..+++. .++++.+.++++. +....++++|.++......|+++ ....++++.+.++|||+++.-..+.
T Consensus 265 e~f~~lr~~~--drv~i~t~si~~~-L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 265 ENFEALRARL--DRVRIHTDSIEEV-LRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred hHHHHHhcCC--CeEEEEeccHHHH-HHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 3334444443 7899999998774 33334599999999999999964 5677999999999999999865443
No 332
>KOG2352|consensus
Probab=82.13 E-value=2.1 Score=44.10 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC---CCCeEEEEecccCCc--ccc--cccCcE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---NPKLEFVVANIADQN--LES--IFLAKF 105 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~---~~~i~~~~~Di~~~~--l~~--~~~~~f 105 (433)
.+..+|-+|-|.|.+. .++...++.. +++++++.|.|++.|+..++ ..+..+...|-...- ... ..+..|
T Consensus 295 ~~~~~lvvg~ggG~l~-sfl~~~~p~~--~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLP-SFLHMSLPKF--QITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccc-cceeeecCcc--ceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCC
Confidence 4667899999999998 7777777765 99999999999999999882 122222222321110 000 123678
Q ss_pred eEEEE----cccccchh----h--HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 106 NKIFS----FYCLHWVQ----D--QRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 106 D~Vis----~~~l~~~~----d--~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
|+++. .. .|.+. . ...++..++..|.|.|.+++-..+.+.
T Consensus 372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 88875 22 33321 1 246789999999999999887665543
No 333
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=81.66 E-value=17 Score=35.68 Aligned_cols=94 Identities=9% Similarity=-0.027 Sum_probs=57.4
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEE
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
...+++.+||=.|+|.-......+++. .+ .++++++.+++-++.|++.- .... .+..+. . .+.+|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~--~G-~~vi~~~~~~~~~~~a~~~G----a~~v-i~~~~~--~---~~~~d~~ 227 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALA--QG-ATVHVMTRGAAARRLALALG----AASA-GGAYDT--P---PEPLDAA 227 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHH--CC-CeEEEEeCChHHHHHHHHhC----Ccee-cccccc--C---cccceEE
Confidence 455789999999975332221223332 23 57999999999988888752 1111 121111 1 1457876
Q ss_pred EEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+..... ...+....+.|++||++++..
T Consensus 228 i~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 654332 236778889999999998764
No 334
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=81.39 E-value=8.4 Score=37.75 Aligned_cols=98 Identities=21% Similarity=0.300 Sum_probs=56.6
Q ss_pred cCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccc--ccCcE
Q psy11646 29 FKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESI--FLAKF 105 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~--~~~~f 105 (433)
+...++.+||-.|||. |..+..+++ .. +..++++++.++...+.+++. +.. .++ +.....+... ..+.+
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak-~~--G~~~v~~~~~s~~~~~~~~~~-g~~--~vi--~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAAR-RA--GAAEIVATDLADAPLAVARAM-GAD--ETV--NLARDPLAAYAADKGDF 232 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-Hc--CCcEEEEECCCHHHHHHHHHc-CCC--EEE--cCCchhhhhhhccCCCc
Confidence 3334788999988764 444433333 22 312789999999988876653 211 111 2211111110 11458
Q ss_pred eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
|+|+..... ...++.+.+.|+++|+++..
T Consensus 233 d~vld~~g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 233 DVVFEASGA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 999875432 23567888999999998864
No 335
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.09 E-value=12 Score=37.11 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=58.9
Q ss_pred cCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEe----cccCCccccccc
Q psy11646 29 FKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA----NIADQNLESIFL 102 (433)
Q Consensus 29 l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~----Di~~~~l~~~~~ 102 (433)
...+++.+||=.|++ .|..+..+++ . .+ .++++++.+++..+.+++.++.. .++.. +... .+.....
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk-~--~G-~~Vi~~~~~~~k~~~~~~~lGa~--~vi~~~~~~~~~~-~i~~~~~ 226 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAK-L--HG-CYVVGSAGSSQKVDLLKNKLGFD--EAFNYKEEPDLDA-ALKRYFP 226 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHH-H--cC-CEEEEEcCCHHHHHHHHHhcCCC--EEEECCCcccHHH-HHHHHCC
Confidence 445789999999873 4555533333 2 23 58999999998888887544221 11111 1110 0111112
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+.+|+|+-.-. ...+....+.|++||++++..
T Consensus 227 ~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 227 EGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CCcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 45898886433 135677889999999988753
No 336
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=80.47 E-value=49 Score=32.29 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=42.7
Q ss_pred eEEEecCCCCCCCCCch---------hHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEec
Q psy11646 203 DLVVFDGAPDVTGLHDL---------DEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAK 273 (433)
Q Consensus 203 dlVvsD~ap~~tG~~~~---------D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~K 273 (433)
.+..+|...++.+.-+. ..-....++..-+.-|...|++||.+.+=+-+ .-.+...|+..|.+|...+
T Consensus 211 ~v~~s~~~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~l~y~~~L~~~Fg~v~~la 287 (300)
T COG2813 211 EVWASNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR---HLPYEKKLKELFGNVEVLA 287 (300)
T ss_pred EEEEecccccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC---CCChHHHHHHhcCCEEEEE
Confidence 55666666665551111 22233455666677789999999998665553 4455566777888877654
No 337
>KOG1501|consensus
Probab=80.35 E-value=2.7 Score=42.67 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=32.8
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
.|||||+|||-++ .++.+. ++-.+++++.-..|.+.|++-.
T Consensus 69 ~vLdigtGTGLLS-mMAvra---gaD~vtA~EvfkPM~d~arkI~ 109 (636)
T KOG1501|consen 69 FVLDIGTGTGLLS-MMAVRA---GADSVTACEVFKPMVDLARKIM 109 (636)
T ss_pred EEEEccCCccHHH-HHHHHh---cCCeEEeehhhchHHHHHHHHH
Confidence 5899999999998 444332 2247999999999999999876
No 338
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.18 E-value=38 Score=32.69 Aligned_cols=181 Identities=14% Similarity=0.129 Sum_probs=91.7
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CC------------CCeEEEEecccC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TN------------PKLEFVVANIAD 94 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~------------~~i~~~~~Di~~ 94 (433)
.+|.=||+|.-...... .+...+ .+|+..|.+++.++.+.++. .. .++.+ ..|.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~--~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAH--VCALAG-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED 80 (292)
T ss_pred CEEEEECCcHHHHHHHH--HHHHCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH
Confidence 46888888865443222 122233 68999999999888765421 00 11221 112211
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccc
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLF 174 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl 174 (433)
-...|+|+..-.- ...-...+++.+...++|+..++....+ -+...+...+... .++...+ .+.|.
T Consensus 81 -------~~~aD~Vieavpe-~~~~k~~~~~~l~~~~~~~~ii~s~ts~-~~~s~la~~~~~~---~r~~g~h--~~~p~ 146 (292)
T PRK07530 81 -------LADCDLVIEAATE-DETVKRKIFAQLCPVLKPEAILATNTSS-ISITRLASATDRP---ERFIGIH--FMNPV 146 (292)
T ss_pred -------hcCCCEEEEcCcC-CHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHhhcCCc---ccEEEee--ccCCc
Confidence 1456888875431 1112346678888899988765422222 2222222221111 1111111 12222
Q ss_pred ---cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 175 ---TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 175 ---~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
+.+..+.+..+++++.+.+...+..-+-..++....| .++..++..+.++-+..++..|
T Consensus 147 ~~~~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p---------g~i~nRl~~~~~~ea~~~~~~g 208 (292)
T PRK07530 147 PVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP---------AFIVNRILLPMINEAIYTLYEG 208 (292)
T ss_pred ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC---------ChHHHHHHHHHHHHHHHHHHhC
Confidence 3556666777888887777777665544444433233 3455555555555555555443
No 339
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.89 E-value=34 Score=33.83 Aligned_cols=185 Identities=14% Similarity=0.135 Sum_probs=103.3
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------C--------CCeEEEEecccCCccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------N--------PKLEFVVANIADQNLE 98 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------~--------~~i~~~~~Di~~~~l~ 98 (433)
.+|-=||+|+-........ . ..+.+|+..|.+++.++.++++.. . .++++. .+ +.
T Consensus 8 ~~VaVIGaG~MG~giA~~~--a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~-----l~ 78 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARA--L-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-AT-----IE 78 (321)
T ss_pred CEEEEECcCHHHHHHHHHH--H-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CC-----HH
Confidence 5788899985433322211 1 233799999999998877655320 0 111111 11 11
Q ss_pred ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC-chhhHHHhhhcCCCccccccceee-eeccccC
Q psy11646 99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN-PIYDLYEKLSRKPKWTEYTQVRTY-RCLLFTG 176 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~-p~~~~~~~~~~~~~W~~~~~~r~~-~m~pl~g 176 (433)
+ .-...|+|+-+- .+.++-...++.++.+.++|+. ++...++. +..++...+.... ++..-+.. +-.-++-
T Consensus 79 ~-av~~aDlViEav-pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la~~~~~p~---R~~g~HffnP~~~~pL 151 (321)
T PRK07066 79 A-CVADADFIQESA-PEREALKLELHERISRAAKPDA--IIASSTSGLLPTDFYARATHPE---RCVVGHPFNPVYLLPL 151 (321)
T ss_pred H-HhcCCCEEEECC-cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHHHhcCCcc---cEEEEecCCccccCce
Confidence 1 114568887753 3333345677899999999987 33333332 2222322222111 11111111 1122457
Q ss_pred ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG 243 (433)
Q Consensus 177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG 243 (433)
++.+.+..|++++.+.....+..-+-.-|+. .++...+.-..|..+.++-|.+++..|.
T Consensus 152 VEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v--------~kd~pGFi~NRl~~a~~~EA~~lv~eGv 210 (321)
T PRK07066 152 VEVLGGERTAPEAVDAAMGIYRALGMRPLHV--------RKEVPGFIADRLLEALWREALHLVNEGV 210 (321)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCEeEec--------CCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 7888889999988888777766544333222 1234457888888888888888888774
No 340
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.76 E-value=5.8 Score=40.18 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=50.4
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL 114 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l 114 (433)
.+||=|||| ..+...+..+...+..+|+..|.|++.++.+.... ..+++..+.|+.+.+-....-..+|+|++...-
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-GGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-cccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 479999995 44422322222222259999999999888887663 248999999998753221222456999986654
Q ss_pred c
Q psy11646 115 H 115 (433)
Q Consensus 115 ~ 115 (433)
+
T Consensus 79 ~ 79 (389)
T COG1748 79 F 79 (389)
T ss_pred h
Confidence 3
No 341
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.75 E-value=7.9 Score=38.78 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=57.6
Q ss_pred HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc----cccc
Q psy11646 27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL----ESIF 101 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l----~~~~ 101 (433)
.....+++.+||=.|+|. |..+ ..+++. .+..+|+++|.++..++.+++. +.. .+ .+..+... ....
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a-~~lak~--~G~~~Vi~~~~~~~r~~~a~~~-Ga~--~~--i~~~~~~~~~~i~~~~ 256 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSA-LLGAVA--AGASQVVAVDLNEDKLALAREL-GAT--AT--VNAGDPNAVEQVRELT 256 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHH-HHHHHH--cCCCcEEEEcCCHHHHHHHHHc-CCc--eE--eCCCchhHHHHHHHHh
Confidence 334456888999898753 2222 223332 2322699999999999988764 211 11 11111111 1111
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.+.+|+|+-.-.- ...+....+.|+++|+++...
T Consensus 257 ~~g~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 257 GGGVDYAFEMAGS------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEc
Confidence 2358888864321 235667788999999988754
No 342
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.67 E-value=34 Score=33.05 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=93.6
Q ss_pred CEEEEECCCCChhHH-HHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC-----------C------------CeEEEEe
Q psy11646 35 ESVLDVGCGPGNVTS-KLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN-----------P------------KLEFVVA 90 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~-~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~-----------~------------~i~~~~~ 90 (433)
.+|.=||+|.=.... ..++ ..+ .+|+.+|.+++.++.++++... . ++.+. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la---~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~ 78 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA---RTG-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-T 78 (291)
T ss_pred cEEEEECccHHHHHHHHHHH---hcC-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-C
Confidence 367788888533321 2222 233 6899999999999876553200 0 01110 1
Q ss_pred cccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeee
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYR 170 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~ 170 (433)
|. . .-...|+|+..-. ........+++++.+.++|+..+ ++.....+..++...+... .++...+...
T Consensus 79 ~~-----~--~~~~aDlVieav~-e~~~~k~~~~~~l~~~~~~~~il-~S~tsg~~~~~la~~~~~~---~r~ig~hf~~ 146 (291)
T PRK06035 79 SY-----E--SLSDADFIVEAVP-EKLDLKRKVFAELERNVSPETII-ASNTSGIMIAEIATALERK---DRFIGMHWFN 146 (291)
T ss_pred CH-----H--HhCCCCEEEEcCc-CcHHHHHHHHHHHHhhCCCCeEE-EEcCCCCCHHHHHhhcCCc---ccEEEEecCC
Confidence 11 0 0134688877542 22222466788888888887654 3332222333332222211 1111111111
Q ss_pred -eccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 171 -CLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 171 -m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
..-.+.++.+.+..++.++.+.+...+..-+-..+.....| | +....++...++-|.+++..|
T Consensus 147 P~~~~~~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p---g------fv~nRl~~~~~~ea~~~~~~g 210 (291)
T PRK06035 147 PAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVP---G------FFTTRFIEGWLLEAIRSFEIG 210 (291)
T ss_pred CcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC---C------eeHHHHHHHHHHHHHHHHHcC
Confidence 11224566678888888888888877776666666553222 2 233455555555555555444
No 343
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.61 E-value=8.2 Score=38.39 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=56.8
Q ss_pred cCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----cc-cc
Q psy11646 29 FKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SI-FL 102 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~-~~ 102 (433)
....++.+||=.|+|. |..+ ..+++.. +..+++++|.++...+.+++. +.. .++ +..+.... .. ..
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a-~~~ak~~--G~~~Vi~~~~~~~~~~~~~~~-Ga~--~~i--~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAA-IAGAALA--GASKIIAVDIDDRKLEWAREF-GAT--HTV--NSSGTDPVEAIRALTGG 243 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHH-HHHHHHc--CCCeEEEEcCCHHHHHHHHHc-CCc--eEE--cCCCcCHHHHHHHHhCC
Confidence 3456899999998743 2222 2233322 322699999999999998754 211 111 22111111 11 11
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..+|+|+-.-.- ...+....+.+++||++++..
T Consensus 244 ~g~d~vid~~g~------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVIDAVGR------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEC
Confidence 358988764331 235667788999999988764
No 344
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=79.20 E-value=20 Score=34.22 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=60.8
Q ss_pred cCCCCCCEEEEECCCCCh---hHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcE
Q psy11646 29 FKWTDNESVLDVGCGPGN---VTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~---~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
+..+..+|||-+|+|+-. -+...|++.+|.+ ..++-.|+.+-. ...-..+.+|......+ .++
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~-ailvDnDi~d~v---------SDa~~~~~~Dc~t~~~~----~k~ 122 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPED-AILVDNDIRDYV---------SDADQSIVGDCRTYMPP----DKF 122 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS--B----------SSSEEEES-GGGEEES----S-E
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCC-cEEEecchhhhc---------cccCCceeccccccCCC----Ccc
Confidence 334468999999998643 2336778888877 677788876421 12234566787766433 899
Q ss_pred eEEEEccc---ccch----hh----HHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccc
Q psy11646 106 NKIFSFYC---LHWV----QD----QRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEY 163 (433)
Q Consensus 106 D~Vis~~~---l~~~----~d----~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~ 163 (433)
|+|+|-.. .+.+ .+ ..-+..-+.+.|+=||.+++-.-......+.++....-..|.-+
T Consensus 123 DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F~~wt~F 191 (299)
T PF06460_consen 123 DLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYFSWWTCF 191 (299)
T ss_dssp EEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEEEE
T ss_pred cEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhcccEEEE
Confidence 99999543 1111 11 22345566788899999888653333334455444433445433
No 345
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.96 E-value=20 Score=34.84 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=57.4
Q ss_pred hcCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-ccc----cc
Q psy11646 28 QFKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLE----SI 100 (433)
Q Consensus 28 ~l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~----~~ 100 (433)
....+++.+||=.|+ |.|..+..+++ . .+ .++++++.+++..+.+++. +.. .++ +..+. ... ..
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk-~--~G-~~Vi~~~~s~~~~~~~~~l-Ga~--~vi--~~~~~~~~~~~~~~~ 203 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAK-L--KG-CKVVGAAGSDEKVAYLKKL-GFD--VAF--NYKTVKSLEETLKKA 203 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHHc-CCC--EEE--eccccccHHHHHHHh
Confidence 344578999998885 34455533333 2 23 5899999999988888653 221 111 11110 011 11
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
..+.+|+|+-.-. ...+....+.|+++|+++..
T Consensus 204 ~~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 SPDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEe
Confidence 1246898886433 12457788999999999865
No 346
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=78.95 E-value=11 Score=35.33 Aligned_cols=74 Identities=28% Similarity=0.377 Sum_probs=41.7
Q ss_pred CceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCH
Q psy11646 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNV 255 (433)
Q Consensus 176 gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~ 255 (433)
.+..+++|..+. -+....+|.|.+.. |++++.. ...++.=..++|+|||.+++=-|.-++.
T Consensus 99 ~i~~v~~da~~l--------p~~d~sfD~v~~~f-----glrn~~d------~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 99 NIEFVQGDAEDL--------PFPDNSFDAVTCSF-----GLRNFPD------RERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp SEEEEE-BTTB----------S-TT-EEEEEEES------GGG-SS------HHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred CeeEEEcCHHHh--------cCCCCceeEEEHHh-----hHHhhCC------HHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 455666664432 13446788888766 3444432 2347788899999999999888877776
Q ss_pred HHHHHHHhcccce
Q psy11646 256 VCLETKFQIFFEN 268 (433)
Q Consensus 256 ~~~~~~l~~~F~~ 268 (433)
..+....+..|+.
T Consensus 160 ~~~~~~~~~y~~~ 172 (233)
T PF01209_consen 160 PLLRALYKFYFKY 172 (233)
T ss_dssp HHHHHHHHH----
T ss_pred chhhceeeeeecc
Confidence 5555444444444
No 347
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.11 E-value=26 Score=33.86 Aligned_cols=181 Identities=9% Similarity=0.037 Sum_probs=94.8
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc------C--C------------CCeEEEEecccCC
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH------T--N------------PKLEFVVANIADQ 95 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~------~--~------------~~i~~~~~Di~~~ 95 (433)
+|.=||+|.-... ++..+...+ .+|+..|.+++.++.+.++. . . .++.+ ..+..+
T Consensus 3 ~V~VIG~G~mG~~--iA~~la~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~- 77 (288)
T PRK09260 3 KLVVVGAGVMGRG--IAYVFAVSG-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA- 77 (288)
T ss_pred EEEEECccHHHHH--HHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH-
Confidence 5777888743322 211111233 68999999999998876542 0 0 01111 112111
Q ss_pred cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeecccc
Q psy11646 96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFT 175 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~ 175 (433)
.-...|+|+..-.- ...-...++.++.+.++|+..+.....+ -+.......... -.+....+. +.|..
T Consensus 78 -----~~~~aD~Vi~avpe-~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~~~~~~---~~r~~g~h~--~~Pv~ 145 (288)
T PRK09260 78 -----AVADADLVIEAVPE-KLELKKAVFETADAHAPAECYIATNTST-MSPTEIASFTKR---PERVIAMHF--FNPVH 145 (288)
T ss_pred -----hhcCCCEEEEeccC-CHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHhhcCC---cccEEEEec--CCCcc
Confidence 11446888865441 2222345677888888887654443322 232222222211 111111111 23333
Q ss_pred ---CceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 176 ---GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 176 ---gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
-+..+.++.++.++.+.+...+..-+-..+... +...+...++..+.++-|.+++..|
T Consensus 146 ~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~---------d~~Gf~~nRl~~~~~~ea~~~~~~g 206 (288)
T PRK09260 146 KMKLVELIRGLETSDETVQVAKEVAEQMGKETVVVN---------EFPGFVTSRISALVGNEAFYMLQEG 206 (288)
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---------CcccHHHHHHHHHHHHHHHHHHHcC
Confidence 345556667788887777777765555444442 2224666777777777777777665
No 348
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=78.10 E-value=18 Score=34.88 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=66.0
Q ss_pred CCEEEEECCCCChhH-HHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 34 NESVLDVGCGPGNVT-SKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~-~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
|..|+-+| .-.++ ..++....| .++..+||.+..+..-++-+ +..+++.+..|+... +|+...+.||+.+
T Consensus 153 gK~I~vvG--DDDLtsia~aLt~mp---k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 153 GKEIFVVG--DDDLTSIALALTGMP---KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CCeEEEEc--CchhhHHHHHhcCCC---ceEEEEechHHHHHHHHHHHHHhCccchhheeehhccc-ChHHHHhhCCeee
Confidence 56788888 33333 122222222 48999999999998877665 556799999999874 7877779999887
Q ss_pred EcccccchhhHHHHHHHHHHhccCC---CEEEEEe
Q psy11646 110 SFYCLHWVQDQRQAISNIYNLLMPG---GEVLLLL 141 (433)
Q Consensus 110 s~~~l~~~~d~~~~l~~i~~~LkpG---G~lll~~ 141 (433)
.-.+ +.+.-...++.+-...||.- |++-++.
T Consensus 227 TDPp-eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 227 TDPP-ETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred cCch-hhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 6333 33333455555555666644 6666653
No 349
>PTZ00357 methyltransferase; Provisional
Probab=77.73 E-value=6.8 Score=42.24 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=62.2
Q ss_pred EEEEECCCCChhHHHHhcccCCCC-CcEEEEEeCCHHHHHHHHhhc-----C-------CCCeEEEEecccCCcccc---
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKS-VVKLVGLDVSPNMIKHAKNHH-----T-------NPKLEFVVANIADQNLES--- 99 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~-~~~v~gvDiS~~~l~~A~~~~-----~-------~~~i~~~~~Di~~~~l~~--- 99 (433)
.|+=+|+|-|-+....+......+ -.++++++-++..+...+.+. . ...|+++..|+.....+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999988755554332111 258999999966443433331 2 235899999998864331
Q ss_pred -----cccCcEeEEEE--cccccchhhHHHHHHHHHHhccC----CCE
Q psy11646 100 -----IFLAKFNKIFS--FYCLHWVQDQRQAISNIYNLLMP----GGE 136 (433)
Q Consensus 100 -----~~~~~fD~Vis--~~~l~~~~d~~~~l~~i~~~Lkp----GG~ 136 (433)
...+++|+|+| .+.+-.-+--...|..+.+.||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 11147999998 33333222234556666777765 675
No 350
>KOG2671|consensus
Probab=77.28 E-value=6.1 Score=39.07 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=69.5
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHh-------hc---C--CCCeEEEEecccCC
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN-------HH---T--NPKLEFVVANIADQ 95 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~-------~~---~--~~~i~~~~~Di~~~ 95 (433)
....+||+-|+|-=.|||++. ...+ .+ ++.|+|.||+-.++...|. ++ + ..-+.+..+|....
T Consensus 203 ~Amv~pGdivyDPFVGTGslL-vsaa-~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLL-VSAA-HF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP 277 (421)
T ss_pred hhccCCCCEEecCccccCcee-eehh-hh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc
Confidence 334578999999999999987 2222 22 2589999999988873221 22 1 12256778888776
Q ss_pred cccccccCcEeEEEEccccc------------------------chh--------h-HHHHHHHHHHhccCCCEEEEEec
Q psy11646 96 NLESIFLAKFNKIFSFYCLH------------------------WVQ--------D-QRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~------------------------~~~--------d-~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
++.. ...||.|+|-...- |.+ + ....+.-..+.|..||++++..+
T Consensus 278 ~~rs--n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 278 PLRS--NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred chhh--cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 5543 57899999843211 111 0 22345666788888998887655
No 351
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=77.09 E-value=17 Score=32.23 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=34.9
Q ss_pred ccCcEeEEEEcccccc------hhh-------HHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 101 FLAKFNKIFSFYCLHW------VQD-------QRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~------~~d-------~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
....||.|+-+++... -.+ ....++.+.++|+++|.+.++.....|
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 3588999999887544 111 346789999999999999998766655
No 352
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=76.75 E-value=8.4 Score=40.55 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=63.6
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-------------c---
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-------------N--- 96 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-------------~--- 96 (433)
++.+|+=+|+|.=......+++.. + ..++++|.++..++.++.. +.+++..|..+. +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--G-A~V~v~d~~~~rle~a~~l----Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--G-AIVRAFDTRPEVKEQVQSM----GAEFLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--C-CEEEEEeCCHHHHHHHHHc----CCeEEeccccccccccccceeecCHHHHH
Confidence 578999999987654423333322 2 4799999999998888873 233433332110 0
Q ss_pred -----ccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 97 -----LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 97 -----l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+. .....+|+|+..-.+..-+.+.-..+++.+.+|||+.++-.
T Consensus 236 ~~~~~~~-e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 236 AEMELFA-AQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHH-HHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 01 01246899987665554444445678889999999987654
No 353
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=76.68 E-value=1.3 Score=36.83 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=54.2
Q ss_pred CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----cccc-CcEeEEEEcccccchh
Q psy11646 44 PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SIFL-AKFNKIFSFYCLHWVQ 118 (433)
Q Consensus 44 ~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~~~-~~fD~Vis~~~l~~~~ 118 (433)
-|..+..+++ ... .+++++|.++.-++.+++.- .... .|..+..+. .... ..+|+|+-+-.
T Consensus 2 vG~~a~q~ak-~~G---~~vi~~~~~~~k~~~~~~~G----a~~~-~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 2 VGLMAIQLAK-AMG---AKVIATDRSEEKLELAKELG----ADHV-IDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHH-HTT---SEEEEEESSHHHHHHHHHTT----ESEE-EETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred hHHHHHHHHH-HcC---CEEEEEECCHHHHHHHHhhc----cccc-ccccccccccccccccccccceEEEEecC-----
Confidence 3555534443 332 59999999999999998752 2211 232222111 1112 47999987655
Q ss_pred hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 119 DQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 119 d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
-...++...++|+++|++++....
T Consensus 68 -~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 -SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -SHHHHHHHHHHEEEEEEEEEESST
T ss_pred -cHHHHHHHHHHhccCCEEEEEEcc
Confidence 245788889999999999987543
No 354
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.53 E-value=64 Score=31.39 Aligned_cols=184 Identities=15% Similarity=0.159 Sum_probs=88.1
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----C---CC--------CeEEEEecccCCcccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----T---NP--------KLEFVVANIADQNLES 99 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~---~~--------~i~~~~~Di~~~~l~~ 99 (433)
.+|.=||+|.-..+ ++..+...+ .+|+++|.+++.++.+++.. . .. ++++ ..|.. +
T Consensus 5 ~~I~vIGaG~mG~~--iA~~l~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-----~ 75 (311)
T PRK06130 5 QNLAIIGAGTMGSG--IAALFARKG-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLA-----A 75 (311)
T ss_pred cEEEEECCCHHHHH--HHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHH-----H
Confidence 46778888764433 222222233 68999999999988877631 0 00 0111 11111 0
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccc---cC
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLF---TG 176 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl---~g 176 (433)
.....|+|+..-.- .......++.++...++++. ++.+....-+.......+..... +...+ ...|. +.
T Consensus 76 -~~~~aDlVi~av~~-~~~~~~~v~~~l~~~~~~~~-ii~s~tsg~~~~~l~~~~~~~~~---~ig~h--~~~p~~~~~l 147 (311)
T PRK06130 76 -AVSGADLVIEAVPE-KLELKRDVFARLDGLCDPDT-IFATNTSGLPITAIAQAVTRPER---FVGTH--FFTPADVIPL 147 (311)
T ss_pred -HhccCCEEEEeccC-cHHHHHHHHHHHHHhCCCCc-EEEECCCCCCHHHHHhhcCCccc---EEEEc--cCCCCccCce
Confidence 11456888875431 11224556777777776654 44433333333222222211111 11111 11111 12
Q ss_pred ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG 243 (433)
Q Consensus 177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG 243 (433)
+..+.++-++....+.+...+..-+-..++.. ++..|. ....+..+.++-|..++..||
T Consensus 148 ~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~--~d~~G~------i~nr~~~~~~~Ea~~l~~~g~ 206 (311)
T PRK06130 148 VEVVRGDKTSPQTVATTMALLRSIGKRPVLVK--KDIPGF------IANRIQHALAREAISLLEKGV 206 (311)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEc--CCCCCc------HHHHHHHHHHHHHHHHHHcCC
Confidence 33345555566666666666655444433332 122233 444555566777777777776
No 355
>KOG1975|consensus
Probab=76.12 E-value=15 Score=36.11 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=58.5
Q ss_pred CceEEEccccccchHHHHHHhc--CCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecC
Q psy11646 176 GVIQVQGDITKESTIKEIFSHF--DDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSR 253 (433)
Q Consensus 176 gv~~iqgDi~~~~t~~~il~~~--~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~ 253 (433)
.+.++.+|.+. ..+...+ ....+|+|.|-.+-.-+ +-+.+-+..+|.-+...|+|||.|+.-+ +
T Consensus 173 ~a~f~~~Dc~~----~~l~d~~e~~dp~fDivScQF~~HYa-------Fetee~ar~~l~Nva~~LkpGG~FIgTi---P 238 (389)
T KOG1975|consen 173 TAVFIAADCFK----ERLMDLLEFKDPRFDIVSCQFAFHYA-------FETEESARIALRNVAKCLKPGGVFIGTI---P 238 (389)
T ss_pred eeEEEEeccch----hHHHHhccCCCCCcceeeeeeeEeee-------eccHHHHHHHHHHHHhhcCCCcEEEEec---C
Confidence 34566666544 3444444 44458999887664221 2245667778888999999999987644 7
Q ss_pred CHHHHHHHHhcccceeEEecCCCCcccccceeEEEee
Q psy11646 254 NVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQN 290 (433)
Q Consensus 254 ~~~~~~~~l~~~F~~v~~~KP~~sr~~s~E~~~v~~~ 290 (433)
+...+...++.. . .+.-..++|-|-..
T Consensus 239 dsd~Ii~rlr~~--e--------~~~~gNdiykv~y~ 265 (389)
T KOG1975|consen 239 DSDVIIKRLRAG--E--------VERFGNDIYKVTYE 265 (389)
T ss_pred cHHHHHHHHHhc--c--------chhhcceeeeEeee
Confidence 888888888765 1 12335566666554
No 356
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.97 E-value=68 Score=30.87 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=94.7
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CC-------------CCeEEEEeccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TN-------------PKLEFVVANIA 93 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~-------------~~i~~~~~Di~ 93 (433)
.+|.=||+|.-..+...+. . ..+.+|+.+|.+++.++.++++. .. .++.+ ..|..
T Consensus 4 ~kIaViGaG~mG~~iA~~l--a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQT--A-FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHH--H-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH
Confidence 3677888886544322221 1 22368999999999888876542 00 11221 11211
Q ss_pred CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeecc
Q psy11646 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLL 173 (433)
Q Consensus 94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~p 173 (433)
+ .-...|+|+..-. ...+-...+++++...++++..+.... +.-+............ ++..-+ ...|
T Consensus 80 ~------a~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~snt-St~~~~~~~~~~~~~~---r~vg~H--f~~p 146 (287)
T PRK08293 80 E------AVKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFATNS-STLLPSQFAEATGRPE---KFLALH--FANE 146 (287)
T ss_pred H------HhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEECc-ccCCHHHHHhhcCCcc---cEEEEc--CCCC
Confidence 1 0145688887644 222234567788888887776443221 2222222222221111 111111 1122
Q ss_pred ---ccCceEEEccccccchHHHHHHhcCCCCCeEEEec-CCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 174 ---FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFD-GAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 174 ---l~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD-~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
.+.++.+.+..+++++.+.+...+..-+-..++.. -.| .+.-.++..+.++-|.+++..|
T Consensus 147 ~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~p---------gfi~nRi~~~~~~ea~~l~~~g 210 (287)
T PRK08293 147 IWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQP---------GYILNSLLVPFLSAALALWAKG 210 (287)
T ss_pred CCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCC---------CHhHHHHHHHHHHHHHHHHHcC
Confidence 23456667777888888777777666555443332 333 2455666666777777777666
No 357
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.60 E-value=30 Score=28.71 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC 113 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~ 113 (433)
..+|+|+|-|-=......|+ ..+..++++|+.+. .|. .++.+..-|+.+..+. .-...|+|.|..+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~----e~g~dv~atDI~~~---~a~-----~g~~~v~DDitnP~~~--iY~~A~lIYSiRp 79 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLA----ERGFDVLATDINEK---TAP-----EGLRFVVDDITNPNIS--IYEGADLIYSIRP 79 (129)
T ss_pred CCcEEEEccchHHHHHHHHH----HcCCcEEEEecccc---cCc-----ccceEEEccCCCccHH--HhhCccceeecCC
Confidence 34999998876443333344 33368999999987 222 5788999999875433 1244677777544
Q ss_pred ccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 114 LHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 114 l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
.++....+-.+.+.+ |..+++..++..+
T Consensus 80 ---ppEl~~~ildva~aV--ga~l~I~pL~Ge~ 107 (129)
T COG1255 80 ---PPELQSAILDVAKAV--GAPLYIKPLTGEP 107 (129)
T ss_pred ---CHHHHHHHHHHHHhh--CCCEEEEecCCCC
Confidence 234444454555544 4556666555554
No 358
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.57 E-value=8.6 Score=36.81 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCC---CCcEEEEEeCCHHHHHHHHhhc-CC---CCeEEEEeccc
Q psy11646 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPK---SVVKLVGLDVSPNMIKHAKNHH-TN---PKLEFVVANIA 93 (433)
Q Consensus 21 ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~---~~~~v~gvDiS~~~l~~A~~~~-~~---~~i~~~~~Di~ 93 (433)
++..+.+.--+.+...++|+|||.|.++ ..++...+. ....++.||-...-.+ +-.+. .. ..++=+..||.
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS-~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELS-RWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHH-HHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEee
Confidence 4444444433467778999999999999 566655532 2358999998553322 22222 11 35666778888
Q ss_pred CCcccc
Q psy11646 94 DQNLES 99 (433)
Q Consensus 94 ~~~l~~ 99 (433)
+..+..
T Consensus 84 dl~l~~ 89 (259)
T PF05206_consen 84 DLDLSK 89 (259)
T ss_pred ccchhh
Confidence 776554
No 359
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.51 E-value=20 Score=32.85 Aligned_cols=107 Identities=13% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccc-------cccCc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLES-------IFLAK 104 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~-------~~~~~ 104 (433)
.+.+||=.|++.| .+..++..+...+ .+|++++.++..++.+.+.. ...++++..+|+.+..--. ...+.
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 3568999998644 3324444333344 68999999988776654433 2246788889987532110 01134
Q ss_pred EeEEEEcccccch------hh-----------HHHHHHHHHHhccCCCEEEEEe
Q psy11646 105 FNKIFSFYCLHWV------QD-----------QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 105 fD~Vis~~~l~~~------~d-----------~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.|.++.+...... ++ ...+++.+.+.++++|.+++..
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6877765542211 11 1123555566667788777654
No 360
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.16 E-value=20 Score=34.19 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=57.0
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--ccccc-ccCc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--NLESI-FLAK 104 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~l~~~-~~~~ 104 (433)
.....++.+||=+|+|+=......+++.. +..+++++|.++.-++.|++.- .... .+.... ..... ....
T Consensus 115 ~~~~~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~~G----a~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 115 AAGDLKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALSFG----ATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcC----CcEe-cCchhhHHHHHHHhCCCC
Confidence 33445788999998753222212233332 3225899999999888887742 1111 111110 01110 1135
Q ss_pred EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|+|+-.-. ....+....+.|+++|++++..
T Consensus 188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence 888876433 1346777889999999988764
No 361
>KOG0821|consensus
Probab=74.92 E-value=6.8 Score=36.32 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC
Q psy11646 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ 95 (433)
Q Consensus 20 ~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~ 95 (433)
++-+.+++..+.-...-|.+||.|+|..+..++.. +..++..+++++..+.-.+-.. ...+..+...|+...
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a----~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNA----DVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhc----chhheeeeeeccccChHHHHHhhcCCcceEEecccccee
Confidence 34444555554445678999999999999777752 3346777777766554433322 234566666666443
No 362
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=74.77 E-value=30 Score=33.10 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=64.5
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC------CCCeEEEEecccCCcccc-cc-----
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT------NPKLEFVVANIADQNLES-IF----- 101 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~------~~~i~~~~~Di~~~~l~~-~~----- 101 (433)
...|+.+|||-=.-..++ . .+.+ .+++=+|.-. .++.-++.+. ..+.+++..|+.. ...+ ..
T Consensus 82 ~~qvV~LGaGlDTr~~Rl-~--~~~~-~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~-~w~~~L~~~gfd 155 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRL-P--WPDG-TRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQ-DWPAALAAAGFD 155 (260)
T ss_pred CcEEEEeCCccccHHHhc-C--CCCC-CeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchh-hHHHHHHhCCCC
Confidence 346999999986655332 1 1222 4666666543 4443333331 3577888889872 2222 11
Q ss_pred cCcEeEEEEcccccchh--hHHHHHHHHHHhccCCCEEEEEecc
Q psy11646 102 LAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLLLNA 143 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~--d~~~~l~~i~~~LkpGG~lll~~~~ 143 (433)
.+.--++++-+++.+++ ....+++.+.+...||+.+++....
T Consensus 156 ~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 156 PTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 12344777778888875 4567899999988899998876543
No 363
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=74.56 E-value=23 Score=31.25 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=52.5
Q ss_pred chhhhhhhhhhcHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC
Q psy11646 3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82 (433)
Q Consensus 3 ~a~~Y~~~~~~~~~~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~ 82 (433)
..+.|..+.........++.+. +..+. ..+.+|.=.|+|..+.+..-.....+. .-...+|.++.- .-.-.
T Consensus 39 ~~~~y~~f~~~~~~~~~~l~~~-L~~~~-~~gk~I~~yGA~~kg~tlln~~g~~~~--~I~~vvD~np~K-----~G~~~ 109 (160)
T PF08484_consen 39 TIEYYENFAKRVEQSKAELREF-LEKLK-AEGKRIAGYGAGAKGNTLLNYFGLDND--LIDYVVDDNPLK-----QGKYL 109 (160)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHH-HTT--EEEE---SHHHHHHHHHT--TT--TS--EEES-GGG-----TTEE-
T ss_pred ChHHHHHHHHHHHHHHHHHHHH-HHHHH-HcCCEEEEECcchHHHHHHHHhCCCcc--eeEEEEeCChhh-----cCccc
Confidence 4556665544444333333333 32222 357899999999988873333322122 134677887741 11111
Q ss_pred CCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 83 ~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
++..+-..+-+. +. ....|.|+... .++ .+..++++.+.+..||.+++.
T Consensus 110 PGt~ipI~~p~~--l~---~~~pd~vivla-w~y---~~EI~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 110 PGTHIPIVSPEE--LK---ERKPDYVIVLA-WNY---KDEIIEKLREYLERGGKFIVP 158 (160)
T ss_dssp TTT--EEEEGGG-------SS--SEEEES--GGG---HHHHHHHTHHHHHTT-EEEE-
T ss_pred CCCCCeECCHHH--Hh---hCCCCEEEEcC-hhh---HHHHHHHHHHHHhcCCEEEEe
Confidence 222222222222 12 25578877643 333 355677777888999998874
No 364
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=74.56 E-value=20 Score=35.46 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=56.6
Q ss_pred CCCCCEEEEECCCCChhH-HHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 31 WTDNESVLDVGCGPGNVT-SKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~-~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
.+++.+||=+|||.=... ..+++.... ..+++++|.++.-++.|++ +. .. .. +.. ... ...+|+|+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g--~~~vi~~~~~~~k~~~a~~-~~--~~-~~---~~~--~~~--~~g~d~vi 227 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYP--ESKLVVFGKHQEKLDLFSF-AD--ET-YL---IDD--IPE--DLAVDHAF 227 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcC--CCcEEEEeCcHhHHHHHhh-cC--ce-ee---hhh--hhh--ccCCcEEE
Confidence 467899999997643322 122222222 2489999999998888875 31 11 11 111 111 12478887
Q ss_pred EcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
-.-.-. .....+....++|++||++++..
T Consensus 228 D~~G~~---~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVGGR---GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCCCC---ccHHHHHHHHHhCcCCcEEEEEe
Confidence 544310 12456788889999999988764
No 365
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.38 E-value=14 Score=36.15 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=56.9
Q ss_pred HhcCCCCCCEEEEECCCCChhHH--HHhcccCCCCCcE-EEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---cccc
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTS--KLLLPNLPKSVVK-LVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---LESI 100 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~--~~l~~~~~~~~~~-v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---l~~~ 100 (433)
......++.+||=+|+| ..+. ..+++.. + .+ +++++.+++..+.+++.- .... .+..+.. +...
T Consensus 157 ~~~~~~~g~~vlV~G~G--~vG~~~~~~ak~~--G-~~~vi~~~~~~~~~~~~~~~g----a~~~-i~~~~~~~~~~~~~ 226 (339)
T cd08239 157 RRVGVSGRDTVLVVGAG--PVGLGALMLARAL--G-AEDVIGVDPSPERLELAKALG----ADFV-INSGQDDVQEIREL 226 (339)
T ss_pred HhcCCCCCCEEEEECCC--HHHHHHHHHHHHc--C-CCEEEEECCCHHHHHHHHHhC----CCEE-EcCCcchHHHHHHH
Confidence 34455679999999864 3331 2233322 2 35 999999999888886642 1111 1211111 1111
Q ss_pred -ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 101 -FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 101 -~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
....+|+|+-... ....+....+.|+++|++++..
T Consensus 227 ~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 227 TSGAGADVAIECSG------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred hCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1136899886433 1234566778999999988753
No 366
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=73.93 E-value=6.2 Score=34.93 Aligned_cols=79 Identities=27% Similarity=0.246 Sum_probs=46.6
Q ss_pred ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHH
Q psy11646 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVV 256 (433)
Q Consensus 177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~ 256 (433)
+.....|+.+ ......+|+|+|.-. -..|.. ....+....++-|.++|++||.+++=+-+..+..
T Consensus 83 v~~~~~d~~~---------~~~~~~fD~Iv~NPP-~~~~~~-----~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~ 147 (170)
T PF05175_consen 83 VEVVQSDLFE---------ALPDGKFDLIVSNPP-FHAGGD-----DGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYE 147 (170)
T ss_dssp EEEEESSTTT---------TCCTTCEEEEEE----SBTTSH-----CHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHH
T ss_pred cccccccccc---------cccccceeEEEEccc-hhcccc-----cchhhHHHHHHHHHHhccCCCEEEEEeecCCChH
Confidence 5555555543 233578999999843 222221 1234555667788999999999987443334344
Q ss_pred HHHHHHhcccceeEEec
Q psy11646 257 CLETKFQIFFENVSIAK 273 (433)
Q Consensus 257 ~~~~~l~~~F~~v~~~K 273 (433)
.+ ++..|..|.+.+
T Consensus 148 ~~---l~~~f~~~~~~~ 161 (170)
T PF05175_consen 148 RL---LKELFGDVEVVA 161 (170)
T ss_dssp HH---HHHHHS--EEEE
T ss_pred HH---HHHhcCCEEEEE
Confidence 44 888899888764
No 367
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=73.56 E-value=29 Score=34.02 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=58.3
Q ss_pred cCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCe-EEEEe-cccCCcccccccCc
Q psy11646 29 FKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL-EFVVA-NIADQNLESIFLAK 104 (433)
Q Consensus 29 l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i-~~~~~-Di~~~~l~~~~~~~ 104 (433)
...++|.+||=.|+ |.|..+..+++ . .+ .++++++.+++..+.+++.++...+ ..... +... .+.......
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk-~--~G-~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~-~i~~~~~~g 221 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAK-L--KG-CYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDA-ALKRYFPNG 221 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHH-HHHHhCCCC
Confidence 44578999998886 34444433333 2 23 5899999999988888874422111 10000 1110 011111246
Q ss_pred EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+|+|+-.-. ...+....+.|+++|+++..
T Consensus 222 vd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYFDNVG-------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEEECCC-------HHHHHHHHHHhccCcEEEEe
Confidence 898876433 24567788999999998865
No 368
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=73.10 E-value=39 Score=32.77 Aligned_cols=98 Identities=19% Similarity=0.143 Sum_probs=56.4
Q ss_pred cCCCCCCEEEEECCC-CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeE
Q psy11646 29 FKWTDNESVLDVGCG-PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 29 l~~~~~~~VLDIGcG-~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
....++.+||-.|+| .|..+..+++ . .+ .++++++.+++..+.+++. +.. .++. +-... ......+.+|+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~-~--~G-~~v~~~~~~~~~~~~~~~~-g~~--~~~~-~~~~~-~~~~~~~~~d~ 228 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYAR-A--MG-FETVAITRSPDKRELARKL-GAD--EVVD-SGAEL-DEQAAAGGADV 228 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHH-H--CC-CEEEEEeCCHHHHHHHHHh-CCc--EEec-cCCcc-hHHhccCCCCE
Confidence 445678899999876 3433322222 1 23 5899999999988888543 211 1111 11100 10001145888
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
++.... ....+..+.+.|+++|.++...
T Consensus 229 vi~~~~------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVV------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCC------cHHHHHHHHHhcccCCEEEEEC
Confidence 886432 1235677789999999888753
No 369
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=72.85 E-value=25 Score=34.06 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=57.6
Q ss_pred hcCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----ccc
Q psy11646 28 QFKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SIF 101 (433)
Q Consensus 28 ~l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~~ 101 (433)
.....++.+||=.|+ |.|..+..+++ . .+ .++++++.+++..+.+++ ++.. .++ |-.+..+. ...
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~-~--~G-~~vi~~~~s~~~~~~l~~-~Ga~--~vi--~~~~~~~~~~v~~~~ 208 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAK-I--KG-CKVIGCAGSDDKVAWLKE-LGFD--AVF--NYKTVSLEEALKEAA 208 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHH-cCCC--EEE--eCCCccHHHHHHHHC
Confidence 344568899998875 33444433333 2 23 589999999998888877 3221 111 22111111 111
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
...+|+|+-.-. ...+....+.|+++|+++..
T Consensus 209 ~~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 PDGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCCcEEEEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 245898886433 23567888999999998765
No 370
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=72.33 E-value=36 Score=35.88 Aligned_cols=107 Identities=13% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccC-CCCCcEEEEEeCCHHHHHHHHhhc---CC--CCeEEEEecccCCccccc-ccCcE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNL-PKSVVKLVGLDVSPNMIKHAKNHH---TN--PKLEFVVANIADQNLESI-FLAKF 105 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~-~~~~~~v~gvDiS~~~l~~A~~~~---~~--~~i~~~~~Di~~~~l~~~-~~~~f 105 (433)
|+..|.|..||+|.+......... ......++|.+..+.+...|+.+. .. .......+|-... ++. ....|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~--~d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTT--KEWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCC--ccccccccC
Confidence 567899999999998854432211 111246999999999999998874 11 1222223332211 111 12468
Q ss_pred eEEEEccccc--c-------------------h---h-hHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLH--W-------------------V---Q-DQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~--~-------------------~---~-d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|.|+++..+. | + . .-..++..+...|++||...++.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 8888766431 1 0 0 12245666777888888765543
No 371
>PRK10458 DNA cytosine methylase; Provisional
Probab=72.07 E-value=23 Score=37.01 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=42.1
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCC
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQ 95 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~ 95 (433)
..+++|+=||.|.+...+ .. .++..+.++|+++.+.+.-+.++ ..+.......|+.+.
T Consensus 88 ~~~~iDLFsGiGGl~lGf-e~---aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGF-EA---IGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHH-HH---cCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhC
Confidence 569999999999998444 32 23346789999999999888886 233445556777664
No 372
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=71.86 E-value=21 Score=35.27 Aligned_cols=103 Identities=14% Similarity=0.197 Sum_probs=61.4
Q ss_pred hcCCCCCCEEEEECCCCC--hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccccc-Cc
Q psy11646 28 QFKWTDNESVLDVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL-AK 104 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G--~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~-~~ 104 (433)
....+++.+||=.|+..| .++..+++. .+ ..++++--+++-.+.+++.-...-+.+...|+.+. ...... ..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~---~G-~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~-v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKA---LG-ATVVAVVSSSEKLELLKELGADHVINYREEDFVEQ-VRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHH---cC-CcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHH-HHHHcCCCC
Confidence 455678999999986555 444344432 22 26666767777667666653222333333333221 111111 36
Q ss_pred EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
+|+|+-.-. ...+.+..+.|+++|+++....
T Consensus 212 vDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 212 VDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ceEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 999987655 3456667889999999888654
No 373
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=71.72 E-value=12 Score=40.94 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=60.0
Q ss_pred CCCCEEEEECCCCChhHHHHhccc------CCC---CCcEEEEEeCCH---HHHHHHHhh-----------c--------
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPN------LPK---SVVKLVGLDVSP---NMIKHAKNH-----------H-------- 80 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~------~~~---~~~~v~gvDiS~---~~l~~A~~~-----------~-------- 80 (433)
++.-+|+|+|-|+|......++.. .+. .-.+++.+|..| +.+..+.+. .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345789999999998764444322 121 125899999633 333332211 1
Q ss_pred -------CCC--CeEEEEecccCCcccccccCcEeEEEEcccc-cchhh--HHHHHHHHHHhccCCCEEEE
Q psy11646 81 -------TNP--KLEFVVANIADQNLESIFLAKFNKIFSFYCL-HWVQD--QRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 81 -------~~~--~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l-~~~~d--~~~~l~~i~~~LkpGG~lll 139 (433)
... .+++..+|+.+. ++. ....+|+++.-..- ...++ ...+++.+.++++|||.+.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~-~~~-~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANEL-LPQ-LDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHH-HHh-ccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 011 233455666542 222 12568999864321 11122 25789999999999998763
No 374
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.64 E-value=21 Score=34.06 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 31 ~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
+.+++.-+|+|+.+|.++-.++. .+ ..|+++|-.+ |.+. ....+.++....|--..... ....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk----r~-m~V~aVDng~-ma~s---L~dtg~v~h~r~DGfk~~P~---r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK----RN-MRVYAVDNGP-MAQS---LMDTGQVTHLREDGFKFRPT---RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhh----cc-eEEEEeccch-hhhh---hhcccceeeeeccCcccccC---CCCCceEEe
Confidence 45899999999999999966654 23 6899999654 3222 22335677766665443221 256777776
Q ss_pred cccccchhhHHHHHHHHHHhccCC
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPG 134 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpG 134 (433)
-.+ +.+..+-.-+..+|..|
T Consensus 277 DmV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 277 DMV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred ehh----cCcHHHHHHHHHHHHcc
Confidence 444 45566666677777643
No 375
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=71.62 E-value=33 Score=33.60 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=55.5
Q ss_pred CCCC--CEEEEECC--CCChhHHHHhcccCCCCCc-EEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----ccc
Q psy11646 31 WTDN--ESVLDVGC--GPGNVTSKLLLPNLPKSVV-KLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SIF 101 (433)
Q Consensus 31 ~~~~--~~VLDIGc--G~G~~~~~~l~~~~~~~~~-~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~~ 101 (433)
.+++ .+||=.|+ |.|..+..+++ .. + . ++++++.+++..+.+++.++... ++ +..+..+. ...
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk-~~--G-~~~Vi~~~~s~~~~~~~~~~lGa~~--vi--~~~~~~~~~~i~~~~ 221 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGR-LL--G-CSRVVGICGSDEKCQLLKSELGFDA--AI--NYKTDNVAERLRELC 221 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHH-Hc--C-CCEEEEEcCCHHHHHHHHHhcCCcE--EE--ECCCCCHHHHHHHHC
Confidence 3444 89998886 34445433333 22 3 4 79999999988888876543211 11 11111111 111
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
...+|+|+-.-.- ..+....+.|+++|+++..
T Consensus 222 ~~gvd~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 222 PEGVDVYFDNVGG-------EISDTVISQMNENSHIILC 253 (345)
T ss_pred CCCceEEEECCCc-------HHHHHHHHHhccCCEEEEE
Confidence 2468999864331 1346778899999998865
No 376
>PRK13699 putative methylase; Provisional
Probab=71.43 E-value=5.1 Score=37.51 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=31.8
Q ss_pred EEEecccCCcccccccCcEeEEEEcccccc---------------hhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 87 FVVANIADQNLESIFLAKFNKIFSFYCLHW---------------VQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 87 ~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~---------------~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+..+|..+. +....++++|+|+......- .+-....+.+++|+|||||.+++.
T Consensus 4 l~~gD~le~-l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 4 FILGNCIDV-MARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred EEechHHHH-HHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 445554432 22233477777777544320 011357889999999999988763
No 377
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=71.25 E-value=33 Score=32.67 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=49.3
Q ss_pred cEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 61 VKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 61 ~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
.+|+|.|.++..++.|++.- -+.-...+.+. + ..+|+|+..-.... ...+++++...+++|+.+.-+
T Consensus 12 ~~v~g~d~~~~~~~~a~~~g---~~~~~~~~~~~--~-----~~~DlvvlavP~~~---~~~~l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 12 VEVYGYDRDPETLEAALELG---IIDEASTDIEA--V-----EDADLVVLAVPVSA---IEDVLEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp SEEEEE-SSHHHHHHHHHTT---SSSEEESHHHH--G-----GCCSEEEE-S-HHH---HHHHHHHHHCGS-TTSEEEE-
T ss_pred eEEEEEeCCHHHHHHHHHCC---CeeeccCCHhH--h-----cCCCEEEEcCCHHH---HHHHHHHhhhhcCCCcEEEEe
Confidence 59999999999999997652 11111111111 1 45699998877654 467888999999999877766
Q ss_pred eccCCchhhHHHhh
Q psy11646 141 LNAFNPIYDLYEKL 154 (433)
Q Consensus 141 ~~~~~p~~~~~~~~ 154 (433)
.....++...+...
T Consensus 79 ~SvK~~~~~~~~~~ 92 (258)
T PF02153_consen 79 GSVKAPIVEAMERL 92 (258)
T ss_dssp -S-CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 55556666555543
No 378
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=71.24 E-value=17 Score=35.53 Aligned_cols=98 Identities=17% Similarity=0.300 Sum_probs=56.9
Q ss_pred hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc----ccc-c
Q psy11646 28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL----ESI-F 101 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l----~~~-~ 101 (433)
.....++.+||-.|+|. |..+..+++ . .+ .+++++..+++..+.+++.. . .+++ +.....+ ... .
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~-~--~g-~~v~~~~~s~~~~~~~~~~g-~--~~v~--~~~~~~~~~~l~~~~~ 224 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAK-A--RG-ARVIVVDIDDERLEFARELG-A--DDTI--NVGDEDVAARLRELTD 224 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHH-H--cC-CeEEEECCCHHHHHHHHHhC-C--CEEe--cCcccCHHHHHHHHhC
Confidence 34456888999998653 334423333 2 22 58899988888888886542 1 1111 1111111 111 1
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
...+|+++....- ...+..+.+.|+++|.++..
T Consensus 225 ~~~vd~vld~~g~------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 225 GEGADVVIDATGN------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 2458999875321 23567788999999998764
No 379
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=71.05 E-value=44 Score=32.37 Aligned_cols=156 Identities=17% Similarity=0.079 Sum_probs=86.7
Q ss_pred CEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646 35 ESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC 113 (433)
Q Consensus 35 ~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~ 113 (433)
.+|+=+|.|- |.+....++..... ..++|.|.+...++.+.+.- +.....+- .........|+|+..-.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~--v~i~g~d~~~~~~~~a~~lg----v~d~~~~~----~~~~~~~~aD~VivavP 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLV--VRIIGRDRSAATLKAALELG----VIDELTVA----GLAEAAAEADLVIVAVP 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCe--EEEEeecCcHHHHHHHhhcC----cccccccc----hhhhhcccCCEEEEecc
Confidence 4677777663 22222444432221 35799999998888877542 22211110 00011145799998777
Q ss_pred ccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCc----------eEEEc-
Q psy11646 114 LHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGV----------IQVQG- 182 (433)
Q Consensus 114 l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv----------~~iqg- 182 (433)
+..+ ..+++++...|++|..+.-+.....++.+.+........ ++.+.-|+.|. ..+-.
T Consensus 74 i~~~---~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-------~~vg~HPM~G~~~~~~lf~~~~~vltp 143 (279)
T COG0287 74 IEAT---EEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-------RFVGGHPMFGPEADAGLFENAVVVLTP 143 (279)
T ss_pred HHHH---HHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-------eeEecCCCCCCcccccccCCCEEEEcC
Confidence 6643 667888888999998766555555555555543321110 22222233333 22222
Q ss_pred -cccccchHHHHHHhcCCCCCeEEEecCC
Q psy11646 183 -DITKESTIKEIFSHFDDEKVDLVVFDGA 210 (433)
Q Consensus 183 -Di~~~~t~~~il~~~~~~~~dlVvsD~a 210 (433)
..++..+..++.+.++..+..++..|..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~ga~~v~~~~e 172 (279)
T COG0287 144 SEGTEKEWVEEVKRLWEALGARLVEMDAE 172 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcChH
Confidence 2234457888888888888888776654
No 380
>PLN02366 spermidine synthase
Probab=70.69 E-value=38 Score=33.28 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=52.7
Q ss_pred CCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEE----EEeecCCHHHHHHHHhccc-ceeEEe
Q psy11646 198 DDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVG----KIFRSRNVVCLETKFQIFF-ENVSIA 272 (433)
Q Consensus 198 ~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~----Kif~g~~~~~~~~~l~~~F-~~v~~~ 272 (433)
....+|+|++|..... |. ..+ -.....+..+...|+|||.|+. -.+.......+.+.++..| ..|..+
T Consensus 162 ~~~~yDvIi~D~~dp~-~~--~~~----L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~ 234 (308)
T PLN02366 162 PEGTYDAIIVDSSDPV-GP--AQE----LFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYA 234 (308)
T ss_pred cCCCCCEEEEcCCCCC-Cc--hhh----hhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEE
Confidence 3457999999975432 21 111 1123456677889999999986 3334444678899999999 455543
Q ss_pred c-CCCCcccccceeEEEee
Q psy11646 273 K-PKSSRNSSIESFIVCQN 290 (433)
Q Consensus 273 K-P~~sr~~s~E~~~v~~~ 290 (433)
. .-+|-.+..=.|++|..
T Consensus 235 ~~~vPsy~~g~w~f~~as~ 253 (308)
T PLN02366 235 WTTVPTYPSGVIGFVLCSK 253 (308)
T ss_pred EecCCCcCCCceEEEEEEC
Confidence 2 34444444445666643
No 381
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=70.67 E-value=97 Score=29.28 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEEeecCC-HHHHHHHH-hcccceeEEecCCCC
Q psy11646 225 GLLLIGALNITTFLLKPGGTFVGKIFRSRN-VVCLETKF-QIFFENVSIAKPKSS 277 (433)
Q Consensus 225 ~~L~~~al~ia~~~L~~gG~fv~Kif~g~~-~~~~~~~l-~~~F~~v~~~KP~~s 277 (433)
.......+.-+..+|++||.+++.+ |.. ...+...+ +..|..|.+.|.-+.
T Consensus 214 ~~~~~~~~~~~~~~Lk~gG~l~~e~--g~~~~~~~~~~l~~~gf~~v~~~~d~~~ 266 (275)
T PRK09328 214 LDFYRRIIEQAPRYLKPGGWLLLEI--GYDQGEAVRALLAAAGFADVETRKDLAG 266 (275)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEE--CchHHHHHHHHHHhCCCceeEEecCCCC
Confidence 3455667777889999999999865 333 22333333 346888888876654
No 382
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=70.05 E-value=84 Score=31.75 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=60.8
Q ss_pred HHHhcCCCCCCEEEEECCCCChhHHHHhcccC-----CCCCcEEEEEeC----CHHHHHHHHhhc----CCCCe--EEEE
Q psy11646 25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNL-----PKSVVKLVGLDV----SPNMIKHAKNHH----TNPKL--EFVV 89 (433)
Q Consensus 25 l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~-----~~~~~~v~gvDi----S~~~l~~A~~~~----~~~~i--~~~~ 89 (433)
+++.+.-....+|+|+|.|.|.-=..++..+- |+ -.++||++. +...++.+.+++ ..-++ +|..
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~ 180 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPP-SLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHP 180 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCC-eEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEe
Confidence 33444445667899999999952113333221 22 268999999 788888777776 11233 3333
Q ss_pred e---cccCCccccc--ccCcEeEEEEcccccchhh-------HHHHHHHHHHhccCCCEEEE
Q psy11646 90 A---NIADQNLESI--FLAKFNKIFSFYCLHWVQD-------QRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 90 ~---Di~~~~l~~~--~~~~fD~Vis~~~l~~~~d-------~~~~l~~i~~~LkpGG~lll 139 (433)
. +.+....... ..+-.=+|-+...+|++.+ +...+-...+.|+|.-.++.
T Consensus 181 v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 181 VVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred cccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 2 2222111111 1122333335556687742 33445556668899855444
No 383
>KOG0023|consensus
Probab=69.47 E-value=22 Score=35.04 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=60.8
Q ss_pred hcCCCCCCEEEEEC-CCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-c---cccccc
Q psy11646 28 QFKWTDNESVLDVG-CGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-N---LESIFL 102 (433)
Q Consensus 28 ~l~~~~~~~VLDIG-cG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~---l~~~~~ 102 (433)
.....||.+|-=+| +|-|.++..+..+ . +.+|+++|-+..--+.|-++++. +.+....++. . .....+
T Consensus 176 ~~g~~pG~~vgI~GlGGLGh~aVq~AKA-M---G~rV~vis~~~~kkeea~~~LGA---d~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 176 RSGLGPGKWVGIVGLGGLGHMAVQYAKA-M---GMRVTVISTSSKKKEEAIKSLGA---DVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred HcCCCCCcEEEEecCcccchHHHHHHHH-h---CcEEEEEeCCchhHHHHHHhcCc---ceeEEecCCHHHHHHHHHhhc
Confidence 34456888877776 3478887555442 2 26999999998777777776632 2221111111 0 111122
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
.-.|-|.+. + +..+..+.++||++|.+++......+
T Consensus 249 g~~~~v~~~-a-------~~~~~~~~~~lk~~Gt~V~vg~p~~~ 284 (360)
T KOG0023|consen 249 GGIDTVSNL-A-------EHALEPLLGLLKVNGTLVLVGLPEKP 284 (360)
T ss_pred Ccceeeeec-c-------ccchHHHHHHhhcCCEEEEEeCcCCc
Confidence 444555433 2 23466778999999999988654433
No 384
>KOG1227|consensus
Probab=68.85 E-value=3.6 Score=39.87 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=57.3
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeE----EEEecccCCcccccccCcEeEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLE----FVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~----~~~~Di~~~~l~~~~~~~fD~V 108 (433)
.+..|+|+=+|-|.++..++-. .+...|.++|.+|..++..++.+...++. ...+|-... .+....|.|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~---agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~----~~~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVT---AGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP----KPRLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhc---cCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc----Cccccchhe
Confidence 4678999999999999645443 34468999999999999999887333333 333333222 123566777
Q ss_pred EEcccccchhhHHHHHHHHHHhccCCC
Q psy11646 109 FSFYCLHWVQDQRQAISNIYNLLMPGG 135 (433)
Q Consensus 109 is~~~l~~~~d~~~~l~~i~~~LkpGG 135 (433)
..... +.-++--....++|||.|
T Consensus 267 nLGLl----PSse~~W~~A~k~Lk~eg 289 (351)
T KOG1227|consen 267 NLGLL----PSSEQGWPTAIKALKPEG 289 (351)
T ss_pred eeccc----cccccchHHHHHHhhhcC
Confidence 65332 222333334456777744
No 385
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=68.69 E-value=32 Score=35.28 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=61.0
Q ss_pred HHHHHHHhcCC-CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc
Q psy11646 21 LLSQYIDQFKW-TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES 99 (433)
Q Consensus 21 ll~~l~~~l~~-~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~ 99 (433)
.++.+.+..+. -+|.+|+=+|+|+=......+++. .+ .+|+.+|.++..++.|+.. +.+.. +..+
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~--~G-a~ViV~d~d~~R~~~A~~~----G~~~~--~~~e----- 253 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRG--QG-ARVIVTEVDPICALQAAME----GYEVM--TMEE----- 253 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH--CC-CEEEEEECChhhHHHHHhc----CCEEc--cHHH-----
Confidence 34555555443 379999999999744332333322 23 5899999999888887763 22221 2111
Q ss_pred cccCcEeEEEEcccccchhhHHHHHH-HHHHhccCCCEEEEEe
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAIS-NIYNLLMPGGEVLLLL 141 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~-~i~~~LkpGG~lll~~ 141 (433)
. -..+|+|+..-. . ..++. ...+.+|+||.++...
T Consensus 254 ~-v~~aDVVI~atG-----~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 254 A-VKEGDIFVTTTG-----N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred H-HcCCCEEEECCC-----C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 1 135799987533 2 23444 4588999999987764
No 386
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.38 E-value=20 Score=35.28 Aligned_cols=100 Identities=12% Similarity=0.157 Sum_probs=57.1
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----cc-cc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SI-FL 102 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~-~~ 102 (433)
....+++.+||=.|+|.=......+++.. +...++++|.+++..+.+++. +.. .+ .+.....+. .. ..
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~-g~~--~~--v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKEY-GAT--DI--VDYKNGDVVEQILKLTGG 233 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc-CCc--eE--ecCCCCCHHHHHHHHhCC
Confidence 34456788999888652222212233332 323699999999888888763 211 11 122111111 11 12
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
..+|+|+.... ....+....+.|+++|+++..
T Consensus 234 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 234 KGVDAVIIAGG------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCcEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence 45898886433 124677889999999998865
No 387
>PLN02740 Alcohol dehydrogenase-like
Probab=68.26 E-value=25 Score=35.31 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=57.2
Q ss_pred hcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--cc----cccc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--NL----ESIF 101 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~l----~~~~ 101 (433)
....+++.+||=+|+|.=......+++. .+..+|+++|.++..++.|++. +.. .++ +..+. .+ ....
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~~-Ga~--~~i--~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKEM-GIT--DFI--NPKDSDKPVHERIREMT 265 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHc-CCc--EEE--ecccccchHHHHHHHHh
Confidence 3455789999999875322221223332 2312699999999999999764 211 122 21110 01 1111
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL 141 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~ 141 (433)
.+.+|+|+-.-.- ...+....+.+++| |++++..
T Consensus 266 ~~g~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 GGGVDYSFECAGN------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEc
Confidence 1358988865441 24566777888887 9887653
No 388
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=68.12 E-value=13 Score=38.36 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=53.0
Q ss_pred ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCc-----------hhHHHHHHHHHHHHHHHHHhccCCCeE
Q psy11646 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHD-----------LDEHLQGLLLIGALNITTFLLKPGGTF 245 (433)
Q Consensus 177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~-----------~D~~~~~~L~~~al~ia~~~L~~gG~f 245 (433)
+..+++|..+. ..++....+|.|++|.....+|... .|...-..+-...+.-+.++|+|||.+
T Consensus 295 ~~~~~~D~~~~------~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~l 368 (427)
T PRK10901 295 ATVIVGDARDP------AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTL 368 (427)
T ss_pred eEEEEcCcccc------hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 34566665532 1123456799999999766665421 111122344566788888999999999
Q ss_pred E---EEEeecCCHHHHHHHHhc
Q psy11646 246 V---GKIFRSRNVVCLETKFQI 264 (433)
Q Consensus 246 v---~Kif~g~~~~~~~~~l~~ 264 (433)
| |.++...+...+...++.
T Consensus 369 vystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 369 LYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred EEEeCCCChhhCHHHHHHHHHh
Confidence 9 567777777766666654
No 389
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=68.09 E-value=19 Score=30.42 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=48.8
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
+..+|+|||-|.=.-....|+. .+ ..|+++|+.+. .|. .++.+..-|+.+..+. .-...|+|.|..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~---~G-~dV~~tDi~~~---~a~-----~g~~~v~DDif~P~l~--iY~~a~lIYSiR 78 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKE---RG-FDVIATDINPR---KAP-----EGVNFVVDDIFNPNLE--IYEGADLIYSIR 78 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHH---HS--EEEEE-SS-S------------STTEE---SSS--HH--HHTTEEEEEEES
T ss_pred CCCcEEEECcCCCHHHHHHHHH---cC-CcEEEEECccc---ccc-----cCcceeeecccCCCHH--HhcCCcEEEEeC
Confidence 3459999999876655445543 23 69999999997 222 4788899999874332 225689998866
Q ss_pred cccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 113 CLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
+= ++....+.++.+.. |.-+++..++...
T Consensus 79 PP---~El~~~il~lA~~v--~adlii~pL~~e~ 107 (127)
T PF03686_consen 79 PP---PELQPPILELAKKV--GADLIIRPLGGES 107 (127)
T ss_dssp -----TTSHHHHHHHHHHH--T-EEEEE-BTTB-
T ss_pred CC---hHHhHHHHHHHHHh--CCCEEEECCCCCC
Confidence 53 23444555555554 4567776555443
No 390
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=68.02 E-value=20 Score=35.49 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=54.2
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC 113 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~ 113 (433)
..+++|+=||.|.+..-+-. .++.-+.++|+++.+++.-+.++. ...+...|+............+|+++....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~----agf~~~~a~Eid~~a~~ty~~n~~--~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEE----AGFEIVFANEIDPPAVATYKANFP--HGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHh----cCCeEEEEEecCHHHHHHHHHhCC--CCceeechHhhcChhhccccCCCEEEeCCC
Confidence 45899999999999843332 234468999999999999998873 255666777654322211127899998776
Q ss_pred ccch
Q psy11646 114 LHWV 117 (433)
Q Consensus 114 l~~~ 117 (433)
...+
T Consensus 77 CQ~F 80 (328)
T COG0270 77 CQDF 80 (328)
T ss_pred Ccch
Confidence 6544
No 391
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.79 E-value=19 Score=35.61 Aligned_cols=99 Identities=18% Similarity=0.302 Sum_probs=54.8
Q ss_pred hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC---cccc----
Q psy11646 28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ---NLES---- 99 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~---~l~~---- 99 (433)
....+++.+||=.|+|+ |..+ ..+++. .+ .+++++|.+++.++.+++. +. ... .+..+. .+..
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a-~~~a~~--~G-~~vi~~~~~~~~~~~~~~~-Ga---~~~-i~~~~~~~~~~~~~~~~ 231 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYM-VQTAKA--MG-AAVVAIDIDPEKLEMMKGF-GA---DLT-LNPKDKSAREVKKLIKA 231 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHH-HHHHHH--cC-CeEEEEcCCHHHHHHHHHh-CC---ceE-ecCccccHHHHHHHHHh
Confidence 34557899999999854 3333 223332 23 4799999999999988764 21 111 111111 0100
Q ss_pred c-ccCcEe----EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 100 I-FLAKFN----KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 100 ~-~~~~fD----~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
. ....+| +|+-.-. ...++....++|++||++++..
T Consensus 232 ~t~~~g~d~~~d~v~d~~g------~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 232 FAKARGLRSTGWKIFECSG------SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred hcccCCCCCCcCEEEECCC------ChHHHHHHHHHHhcCCeEEEEC
Confidence 0 012244 4542221 1335666788999999998764
No 392
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=67.78 E-value=1.5e+02 Score=30.46 Aligned_cols=192 Identities=9% Similarity=-0.039 Sum_probs=95.6
Q ss_pred hhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcC
Q psy11646 78 NHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRK 157 (433)
Q Consensus 78 ~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~ 157 (433)
++.....++++.+...- -..++-+...++..-++.+..+..+...+++++.++-...+..-+.-.. ....
T Consensus 204 RR~~gePlqYIlG~~~F--------~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaL--A~~~ 273 (423)
T PRK14966 204 RRLNGEPVAYILGVREF--------YGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTV--ALER 273 (423)
T ss_pred HHHcCCCceeEeeeeee--------cCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHH--HHhC
Confidence 33334556666665332 1234455555655555667777777777777776554433332211111 1111
Q ss_pred CCccccccc---eeeee-----ccc-cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchh-H-----H
Q psy11646 158 PKWTEYTQV---RTYRC-----LLF-TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLD-E-----H 222 (433)
Q Consensus 158 ~~W~~~~~~---r~~~m-----~pl-~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D-~-----~ 222 (433)
+.+.-+... ..... ... ..+.++++|+.+... .....+|+|+|+-..-.++..... + +
T Consensus 274 p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l-------~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP 346 (423)
T PRK14966 274 PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM-------PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEP 346 (423)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc-------ccCCCccEEEECCCCCCcchhhhcchhhhcCH
Confidence 111111100 00000 000 145677777654311 012369999998632222211111 0 0
Q ss_pred --------HHHHHHHHHHHHHHHhccCCCeEEEEEeecCC-HHHHHHHHh-cccceeEEecCCCCcccccceeEEEeecc
Q psy11646 223 --------LQGLLLIGALNITTFLLKPGGTFVGKIFRSRN-VVCLETKFQ-IFFENVSIAKPKSSRNSSIESFIVCQNYR 292 (433)
Q Consensus 223 --------~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~-~~~~~~~l~-~~F~~v~~~KP~~sr~~s~E~~~v~~~~~ 292 (433)
-........+.-+...|++||.+++.+ |.+ ...+...++ .-|..|.+.|.-+.+ +.+++++..|
T Consensus 347 ~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi--G~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~----dR~v~~~~~~ 420 (423)
T PRK14966 347 QIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH--GFDQGAAVRGVLAENGFSGVETLPDLAGL----DRVTLGKYMK 420 (423)
T ss_pred HHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE--CccHHHHHHHHHHHCCCcEEEEEEcCCCC----cEEEEEEEhh
Confidence 112234455666788999999987655 444 334444443 358888887766654 6677776544
No 393
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=67.55 E-value=57 Score=33.14 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=58.5
Q ss_pred cCCCCCCEEEEECC-C-CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCC-C---CeEEEEecccC-Cccc---
Q psy11646 29 FKWTDNESVLDVGC-G-PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN-P---KLEFVVANIAD-QNLE--- 98 (433)
Q Consensus 29 l~~~~~~~VLDIGc-G-~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~-~---~i~~~~~Di~~-~~l~--- 98 (433)
...+++.+||=+|+ | -|..+.. +++....+..+++++|.++..++.|++.+.. . +......+..+ ..+.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq-~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAID-YAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATL 249 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHH-HHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHH
Confidence 34567889998873 4 3444423 3333221223799999999999999885311 0 22212222211 1111
Q ss_pred -cc-ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 99 -SI-FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 99 -~~-~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
.. ....+|+|+..-. ....+....+.++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 11 1135888876432 134677788999988876654
No 394
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=67.13 E-value=1.1e+02 Score=32.29 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=93.0
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEeccc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIA 93 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~ 93 (433)
-.+|-=||+|+-...+... .. ..+..|+..|.+++.++.+.++. ... +++.. .|..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~--la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQV--AA-SAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred ccEEEEECcCHHHHHHHHH--HH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 3468888988644332221 11 22379999999999998765432 001 12211 1211
Q ss_pred CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCC-chhhHHHhhhcCCCccccccceeee-e
Q psy11646 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN-PIYDLYEKLSRKPKWTEYTQVRTYR-C 171 (433)
Q Consensus 94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~-p~~~~~~~~~~~~~W~~~~~~r~~~-m 171 (433)
. . ...|+|+..-. +...-...++.++.+.++|+.. +.+ .++. +...+...+.... +...-++.. .
T Consensus 81 -----~-l-~~aDlVIEav~-E~~~vK~~vf~~l~~~~~~~~I-las-nTStl~i~~iA~~~~~p~---r~~G~HFf~Pa 147 (503)
T TIGR02279 81 -----A-L-ADAGLVIEAIV-ENLEVKKALFAQLEELCPADTI-IAS-NTSSLSITAIAAGLARPE---RVAGLHFFNPA 147 (503)
T ss_pred -----H-h-CCCCEEEEcCc-CcHHHHHHHHHHHHhhCCCCeE-EEE-CCCCCCHHHHHHhcCccc---ceEEEeccCcc
Confidence 1 1 35688887532 3233345567788887777654 332 2322 2222222222111 111111111 1
Q ss_pred ccccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646 172 LLFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG 243 (433)
Q Consensus 172 ~pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG 243 (433)
.-.+-++.+.+.-|++++.+.+...+..-+-..|... ++.|. ....+..+.+.=|..++..||
T Consensus 148 pv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~---d~pGf------i~Nrl~~~~~~EA~~l~e~g~ 210 (503)
T TIGR02279 148 PVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH---STPGF------IVNRVARPYYAEALRALEEQV 210 (503)
T ss_pred ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeC---CCCCc------HHHHHHHHHHHHHHHHHHcCC
Confidence 1123566778888888888888777766555555552 33342 444444444444544444443
No 395
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=66.60 E-value=97 Score=34.27 Aligned_cols=182 Identities=12% Similarity=0.106 Sum_probs=104.9
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CC------------CCeEEEEecccC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TN------------PKLEFVVANIAD 94 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~------------~~i~~~~~Di~~ 94 (433)
.+|.=||+|+-...+..+.. ..+..|+..|.+++.++.+.++. .. .++++. .|+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a---~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA---SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 47899999985544333221 22379999999999998776543 00 122211 12111
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC-CchhhHHHhhhcCCCcccccccee-eeec
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF-NPIYDLYEKLSRKPKWTEYTQVRT-YRCL 172 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~-~p~~~~~~~~~~~~~W~~~~~~r~-~~m~ 172 (433)
-...|+|+-. +.+.++-...+++++-+.++|+..+. .+++ -++.++........ ++..-+. .+-.
T Consensus 390 -------~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ila--sNTSsl~i~~la~~~~~p~---r~~g~Hff~P~~ 456 (715)
T PRK11730 390 -------FERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILA--SNTSTISISLLAKALKRPE---NFCGMHFFNPVH 456 (715)
T ss_pred -------hcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEE--EcCCCCCHHHHHhhcCCCc---cEEEEecCCccc
Confidence 1456888765 34555556789999999999986543 3333 34444443332211 1111111 1112
Q ss_pred cccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 173 LFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 173 pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
-.+-++.+.+.-|++.+...+......-+-..|++--.| .+....+..+.++-+.+++..|
T Consensus 457 ~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p---------Gfv~nRi~~~~~~ea~~lv~~G 517 (715)
T PRK11730 457 RMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCP---------GFFVNRVLFPYFAGFSQLLRDG 517 (715)
T ss_pred ccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcC---------chhHHHHHHHHHHHHHHHHHcC
Confidence 235677888999999988888877765554444443222 3555666666666666666554
No 396
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.25 E-value=12 Score=36.86 Aligned_cols=69 Identities=9% Similarity=0.149 Sum_probs=47.2
Q ss_pred EEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccc
Q psy11646 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL 114 (433)
Q Consensus 37 VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l 114 (433)
|+|+-||.|.++.-+ .. .+...+.++|+++.+++..+.++. . .+...|+.+....+ ...+|+++.....
T Consensus 1 vidLF~G~GG~~~Gl-~~---aG~~~~~a~e~~~~a~~ty~~N~~--~-~~~~~Di~~~~~~~--~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGF-EQ---AGFKCVFASEIDKYAQKTYEANFG--N-KVPFGDITKISPSD--IPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHH-HH---cCCeEEEEEeCCHHHHHHHHHhCC--C-CCCccChhhhhhhh--CCCcCEEEecCCC
Confidence 589999999998444 32 233356789999999999998873 2 44567887653222 1357998876543
No 397
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=65.81 E-value=25 Score=33.41 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCCeEEEecCCCCCCCCC-chhH------HHHHHHHHHHHHHHHHhccCCCeE--EEEEeecCCHHHHHH
Q psy11646 190 IKEIFSHFDDEKVDLVVFDGAPDVTGLH-DLDE------HLQGLLLIGALNITTFLLKPGGTF--VGKIFRSRNVVCLET 260 (433)
Q Consensus 190 ~~~il~~~~~~~~dlVvsD~ap~~tG~~-~~D~------~~~~~L~~~al~ia~~~L~~gG~f--v~Kif~g~~~~~~~~ 260 (433)
...+........+|+|+|.--....|.. .-+. +........-++.|.++|++||.+ |..-.++.+.-.++.
T Consensus 104 i~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~ 183 (248)
T COG4123 104 IKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK 183 (248)
T ss_pred HHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence 4455556666689999998766655555 2222 222233566778899999999975 334444444444444
Q ss_pred HHhcccceeEEecCCCCccccc
Q psy11646 261 KFQIFFENVSIAKPKSSRNSSI 282 (433)
Q Consensus 261 ~l~~~F~~v~~~KP~~sr~~s~ 282 (433)
..+-.=+++..+-|+..+...+
T Consensus 184 ~~~~~~k~i~~V~p~~~k~A~~ 205 (248)
T COG4123 184 SYNLEPKRIQFVYPKIGKAANR 205 (248)
T ss_pred hcCCCceEEEEecCCCCCcceE
Confidence 4444445566666666655443
No 398
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=65.80 E-value=51 Score=31.93 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=57.4
Q ss_pred HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcE-EEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc---ccc
Q psy11646 27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVK-LVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE---SIF 101 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~-v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~---~~~ 101 (433)
......++.+||-+|+|. |..+..+++ . .+ .+ +++++.+++..+.+++.. +... .+....... ...
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~-~--~G-~~~v~~~~~~~~~~~~~~~~g----~~~~-~~~~~~~~~~~~~~~ 223 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLK-L--NG-ASRVTVAEPNEEKLELAKKLG----ATET-VDPSREDPEAQKEDN 223 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHH-H--cC-CcEEEEECCCHHHHHHHHHhC----CeEE-ecCCCCCHHHHHHhc
Confidence 344556889999998542 333322222 2 22 34 899999999888886542 2211 121111110 011
Q ss_pred cCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 102 LAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
...+|+++.+.. ....+....+.|+++|+++...
T Consensus 224 ~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 224 PYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 256899986532 1346777789999999987653
No 399
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=65.52 E-value=37 Score=36.37 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------C---CCCeEEEEe
Q psy11646 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------T---NPKLEFVVA 90 (433)
Q Consensus 22 l~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~---~~~i~~~~~ 90 (433)
++..-+....+.+.+||=.|+. |..+..++..+...+ .+|++++.++..++...+.+ + ..++.++.+
T Consensus 68 ~~~~~~~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G-~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~g 145 (576)
T PLN03209 68 IEAIPKELDTKDEDLAFVAGAT-GKVGSRTVRELLKLG-FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVEC 145 (576)
T ss_pred hhccccccccCCCCEEEEECCC-CHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEe
Confidence 3333444445567778877764 555545555544444 68999998887665433221 0 135788999
Q ss_pred cccCCcccccccCcEeEEEEcccc
Q psy11646 91 NIADQNLESIFLAKFNKIFSFYCL 114 (433)
Q Consensus 91 Di~~~~l~~~~~~~fD~Vis~~~l 114 (433)
|+.+...-...-+..|+||++...
T Consensus 146 DLtD~esI~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 146 DLEKPDQIGPALGNASVVICCIGA 169 (576)
T ss_pred cCCCHHHHHHHhcCCCEEEEcccc
Confidence 997632111112567988876543
No 400
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=65.08 E-value=24 Score=34.65 Aligned_cols=100 Identities=11% Similarity=0.200 Sum_probs=66.7
Q ss_pred CCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 34 NESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 34 ~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
+.+|.=||.|. |..+..++. ..+..|+-+|+|..-+......+. .+++........ +.+ .-.+.|+|+..-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~----glgA~Vtild~n~~rl~~ldd~f~-~rv~~~~st~~~--iee-~v~~aDlvIgaV 239 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAI----GLGADVTILDLNIDRLRQLDDLFG-GRVHTLYSTPSN--IEE-AVKKADLVIGAV 239 (371)
T ss_pred CccEEEECCccccchHHHHHh----ccCCeeEEEecCHHHHhhhhHhhC-ceeEEEEcCHHH--HHH-HhhhccEEEEEE
Confidence 34677788775 444434433 223699999999998887777652 345554443322 221 125689999876
Q ss_pred cccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 113 CLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
-+-.-..+.-+.+++.+.+|||+.++-.-
T Consensus 240 LIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 66666677888999999999999887653
No 401
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=64.92 E-value=1e+02 Score=27.29 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCCEEEEECCCCChhHHHHhcc-cCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-cccccccCcEeEEEE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLP-NLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLESIFLAKFNKIFS 110 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~-~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~~~~~~~fD~Vis 110 (433)
++.+|+-|||=+-... +.. ..+. .+++..|++...-... .+ +|..-|.... .++....++||+|++
T Consensus 25 ~~~~iaclstPsl~~~---l~~~~~~~--~~~~Lle~D~RF~~~~------~~-~F~fyD~~~p~~~~~~l~~~~d~vv~ 92 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEA---LKKESKPR--IQSFLLEYDRRFEQFG------GD-EFVFYDYNEPEELPEELKGKFDVVVI 92 (162)
T ss_pred CCCEEEEEeCcHHHHH---HHhhcCCC--ccEEEEeecchHHhcC------Cc-ceEECCCCChhhhhhhcCCCceEEEE
Confidence 5679999999775543 222 2222 4899999987653321 22 4666676543 233334589999999
Q ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
-..+-.-+-.......+..++++++.+++.+
T Consensus 93 DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 93 DPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 8887332234456667777778989888764
No 402
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=64.60 E-value=21 Score=34.56 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=43.4
Q ss_pred CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEe
Q psy11646 199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA 272 (433)
Q Consensus 199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~ 272 (433)
..++|+|++.... +.....+.-+.++|+|||.+++.-+...+...+...++..|+.+...
T Consensus 223 ~~~fDlVvan~~~--------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 223 EGKADVIVANILA--------------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred CCCceEEEEecCH--------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEe
Confidence 3578999986531 11234556678899999999998887777888888887777766554
No 403
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=64.07 E-value=98 Score=34.26 Aligned_cols=182 Identities=11% Similarity=0.088 Sum_probs=105.9
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEecccC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIAD 94 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~~ 94 (433)
.+|-=||+|+-...+..+.. ..+..|+..|.+++.++.++++. ... +++.. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a---~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA---SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 47889999976555333222 22379999999999998876544 001 12111 11110
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC-CchhhHHHhhhcCCCcccccccee-eeec
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF-NPIYDLYEKLSRKPKWTEYTQVRT-YRCL 172 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~-~p~~~~~~~~~~~~~W~~~~~~r~-~~m~ 172 (433)
-...|+|+-. +.+.++-..++++++-++++|+..+. .+++ -++.++......... +..-+. .+..
T Consensus 390 -------~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ila--snTS~l~i~~ia~~~~~p~r---~ig~Hff~P~~ 456 (714)
T TIGR02437 390 -------FDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILA--SNTSTISISLLAKALKRPEN---FCGMHFFNPVH 456 (714)
T ss_pred -------hcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEE--ECCCCCCHHHHHhhcCCccc---EEEEecCCCcc
Confidence 1457888775 44555556789999999999997543 3333 234333332222111 111111 1112
Q ss_pred cccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 173 LFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 173 pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
-.+-++.+.+.-|++++..........-+-.-|+.--.| .+....+..+-++-|..++..|
T Consensus 457 ~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p---------Gfi~NRl~~~~~~ea~~l~~eG 517 (714)
T TIGR02437 457 RMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCP---------GFFVNRVLFPYFGGFSKLLRDG 517 (714)
T ss_pred cCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc---------cchHHHHHHHHHHHHHHHHHCC
Confidence 245677888999999988888877765544444432222 3566677777777777777655
No 404
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=64.06 E-value=17 Score=36.77 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=35.5
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
+.+...|+++||-|.+|-.... .++.. +-.+|++||+||..+...+-+.
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L-~yL~~----~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNAL-DYLLA----GPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHH-HHHhc----CCceEEEEeCCHHHHHHHHHHH
Confidence 3455689999999977655555 55542 2259999999999888776554
No 405
>PRK00536 speE spermidine synthase; Provisional
Probab=64.03 E-value=16 Score=35.04 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=42.6
Q ss_pred CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEE----EEeecCCHHHHHHHHhcccceeEEe
Q psy11646 200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVG----KIFRSRNVVCLETKFQIFFENVSIA 272 (433)
Q Consensus 200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~----Kif~g~~~~~~~~~l~~~F~~v~~~ 272 (433)
..+|+|+.|..++ ....+...+.|++||-++. -.|.......+++.++..|..|..+
T Consensus 138 ~~fDVIIvDs~~~----------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y 198 (262)
T PRK00536 138 KKYDLIICLQEPD----------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPF 198 (262)
T ss_pred CcCCEEEEcCCCC----------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEE
Confidence 5799999997543 1222556889999999998 3455555688899999999877655
No 406
>PLN02827 Alcohol dehydrogenase-like
Probab=63.83 E-value=33 Score=34.48 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=56.0
Q ss_pred cCCCCCCEEEEECCCCChhHHHH--hcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--cc----ccc
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKL--LLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--NL----ESI 100 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~--l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~l----~~~ 100 (433)
...+++.+||=.|+| ..+..+ +++. .+...++++|.++...+.|++. +.. .++ +..+. .. ...
T Consensus 189 ~~~~~g~~VlV~G~G--~vG~~~iqlak~--~G~~~vi~~~~~~~~~~~a~~l-Ga~--~~i--~~~~~~~~~~~~v~~~ 259 (378)
T PLN02827 189 ADVSKGSSVVIFGLG--TVGLSVAQGAKL--RGASQIIGVDINPEKAEKAKTF-GVT--DFI--NPNDLSEPIQQVIKRM 259 (378)
T ss_pred cCCCCCCEEEEECCC--HHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHHc-CCc--EEE--cccccchHHHHHHHHH
Confidence 345689999999864 444222 2322 2323689999999988888654 211 111 21110 01 111
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL 141 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~ 141 (433)
..+.+|+|+-.-.- ...+....+.+++| |++++..
T Consensus 260 ~~~g~d~vid~~G~------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 260 TGGGADYSFECVGD------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred hCCCCCEEEECCCC------hHHHHHHHHhhccCCCEEEEEC
Confidence 11358888764431 23566778889998 9987653
No 407
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=63.69 E-value=1.1e+02 Score=32.12 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=70.4
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-------C---C------CCeEEEEecccCCccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-------T---N------PKLEFVVANIADQNLE 98 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-------~---~------~~i~~~~~Di~~~~l~ 98 (433)
.+|-=||+|.=... ++..+...+ .+|+..|.+++.++...+.. . . .++.+. .|. .
T Consensus 5 ~kIavIG~G~MG~~--iA~~la~~G-~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~~-----~ 75 (495)
T PRK07531 5 MKAACIGGGVIGGG--WAARFLLAG-IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-ASL-----A 75 (495)
T ss_pred CEEEEECcCHHHHH--HHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CCH-----H
Confidence 36777888753322 222222234 69999999999876643211 0 0 012111 111 1
Q ss_pred ccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHH-hhhcCCCccccccceeeeecc---c
Q psy11646 99 SIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE-KLSRKPKWTEYTQVRTYRCLL---F 174 (433)
Q Consensus 99 ~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~-~~~~~~~W~~~~~~r~~~m~p---l 174 (433)
+ .-...|+|+.+-. ....-...++..+...++|+.. +. ..+.......+. .+...+.+ . ...+..| .
T Consensus 76 e-a~~~aD~Vieavp-e~~~vk~~l~~~l~~~~~~~~i-I~-SsTsgi~~s~l~~~~~~~~r~---~--~~hP~nP~~~~ 146 (495)
T PRK07531 76 E-AVAGADWIQESVP-ERLDLKRRVLAEIDAAARPDAL-IG-SSTSGFLPSDLQEGMTHPERL---F--VAHPYNPVYLL 146 (495)
T ss_pred H-HhcCCCEEEEcCc-CCHHHHHHHHHHHHhhCCCCcE-EE-EcCCCCCHHHHHhhcCCcceE---E--EEecCCCcccC
Confidence 1 1145688886433 2222234466777777777643 33 233332222222 22111111 0 0011111 2
Q ss_pred cCceEEEccccccchHHHHHHhcCCCCCeEE
Q psy11646 175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLV 205 (433)
Q Consensus 175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlV 205 (433)
+.+..+.++.+++...+.+...+..-+-..+
T Consensus 147 ~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v 177 (495)
T PRK07531 147 PLVELVGGGKTSPETIRRAKEILREIGMKPV 177 (495)
T ss_pred ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 3445556677777777766666554443333
No 408
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=63.68 E-value=1.5e+02 Score=31.31 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=91.1
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CCC------------CeEEEEeccc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TNP------------KLEFVVANIA 93 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~~------------~i~~~~~Di~ 93 (433)
-.+|-=||+|+-... +.......+ ..|+..|.+++.++.+.++. ... ++... .|..
T Consensus 7 i~~V~VIGaG~MG~g--IA~~la~aG-~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 7 IATVAVIGAGAMGAG--IAQVAAQAG-HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCEEEEECCCHHHHH--HHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 356888888854433 211111233 79999999999998864433 001 12221 1221
Q ss_pred CCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeee-ec
Q psy11646 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYR-CL 172 (433)
Q Consensus 94 ~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~-m~ 172 (433)
. . ...|+|+..- .+...-...++.++.++++|+..+.....+ -+...+........ ++..-++.. ..
T Consensus 83 ~------~-~~aDlViEav-~E~~~vK~~vf~~l~~~~~~~ailasntSt-l~i~~la~~~~~p~---r~~G~hff~Pa~ 150 (507)
T PRK08268 83 D------L-ADCDLVVEAI-VERLDVKQALFAQLEAIVSPDCILATNTSS-LSITAIAAALKHPE---RVAGLHFFNPVP 150 (507)
T ss_pred H------h-CCCCEEEEcC-cccHHHHHHHHHHHHhhCCCCcEEEECCCC-CCHHHHHhhcCCcc---cEEEEeecCCcc
Confidence 1 1 3568888753 333333456677888877777654332222 22222222222111 111111111 11
Q ss_pred cccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCC
Q psy11646 173 LFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGG 243 (433)
Q Consensus 173 pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG 243 (433)
-.+-++.+.+.-++.++.......+..-+-..+... ++.| +....++.+.+.=+..++..||
T Consensus 151 v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~---d~pG------fi~Nrll~~~~~Ea~~l~~~g~ 212 (507)
T PRK08268 151 LMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK---DTPG------FIVNRAARPYYTEALRVLEEGV 212 (507)
T ss_pred cCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec---CCCC------hHHHHHHHHHHHHHHHHHHcCC
Confidence 123456666777788877776666554443333332 2223 3444555555555555555554
No 409
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.30 E-value=1.7e+02 Score=32.39 Aligned_cols=183 Identities=14% Similarity=0.064 Sum_probs=106.3
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------C------------CCeEEEEecccC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------N------------PKLEFVVANIAD 94 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------~------------~~i~~~~~Di~~ 94 (433)
.+|.=||+|+-...+...... ..+..|+..|.+++.++.++++.. . .++++. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTAT--KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 578999998854442332110 223699999999999888765430 0 122221 11110
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC-CchhhHHHhhhcCCCcccccccee-eeec
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF-NPIYDLYEKLSRKPKWTEYTQVRT-YRCL 172 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~-~p~~~~~~~~~~~~~W~~~~~~r~-~~m~ 172 (433)
-...|+|+-. +.+.++-...++.++-+.++|+..+. .+++ -++.++........ ++..-+. .+..
T Consensus 387 -------~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ila--snTS~l~i~~la~~~~~p~---r~ig~Hff~P~~ 453 (708)
T PRK11154 387 -------FKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFA--SNTSSLPIGQIAAAAARPE---QVIGLHYFSPVE 453 (708)
T ss_pred -------hccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEE--ECCCCCCHHHHHHhcCccc---ceEEEecCCccc
Confidence 1457888765 44555556789999999999997554 3333 24444433332211 1111111 1112
Q ss_pred cccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 173 LFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 173 pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
-.+-++.+.+.-|++++...+.......+...|+.. +...+...++..+-++-|.+++..|
T Consensus 454 ~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~---------d~pGfi~nRl~~~~~~EA~~lv~eG 514 (708)
T PRK11154 454 KMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVR---------DGAGFYVNRILAPYINEAARLLLEG 514 (708)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe---------ccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 245778888999999988888777765444333322 2234677777777777777777765
No 410
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=63.13 E-value=58 Score=30.61 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=55.6
Q ss_pred hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcE-EEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcE
Q psy11646 28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVK-LVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKF 105 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~-v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~f 105 (433)
.....++.+||=.|+|. |..+..++. .. + .+ +++++.+++..+.+++.-....+ . ....... ....+
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~-~~--g-~~~vi~~~~~~~~~~~~~~~g~~~~~--~--~~~~~~~---~~~~~ 160 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAK-AA--G-AREVVGVDPDAARRELAEALGPADPV--A--ADTADEI---GGRGA 160 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHH-Hc--C-CCcEEEECCCHHHHHHHHHcCCCccc--c--ccchhhh---cCCCC
Confidence 34456788999888754 333322222 22 2 35 99999999988877764101111 1 0000001 12458
Q ss_pred eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+|+..-.- ...+....+.|+++|+++...
T Consensus 161 d~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 161 DVVIEASGS------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CEEEEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence 888864221 235677788999999988653
No 411
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=62.51 E-value=35 Score=33.60 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc---cccc-ccCc
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN---LESI-FLAK 104 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~---l~~~-~~~~ 104 (433)
....++.+||=.|+|+=......+++.. +...+++++.+++..+.+++. +.. .++ +..... +... ....
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-Ga~--~~i--~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSL-GAM--QTF--NSREMSAPQIQSVLRELR 228 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc-CCc--eEe--cCcccCHHHHHHHhcCCC
Confidence 3446788999998754222212233332 212489999999998888653 211 111 111111 1111 1135
Q ss_pred Ee-EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 105 FN-KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 105 fD-~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+| +|+-.-. -...+....+.|++||.+++..
T Consensus 229 ~d~~v~d~~G------~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILETAG------VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 66 5554222 1346777889999999988764
No 412
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=62.47 E-value=30 Score=33.78 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=54.3
Q ss_pred CCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc----cc-cccC
Q psy11646 30 KWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL----ES-IFLA 103 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l----~~-~~~~ 103 (433)
..+++.+||-.|+|. |..+..++. .. +...+++++.++...+.+++.- ...++ +.....+ .. ....
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak-~~--g~~~v~~~~~~~~~~~~~~~~g---~~~vi--~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGAR-LL--GAARIIAVDSNPERLDLAKEAG---ATDII--NPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-Hc--CCCEEEEEeCCHHHHHHHHHhC---CcEEE--cCCcchHHHHHHHHcCCC
Confidence 345788998877542 334323333 22 2127888888888887776542 11111 1111111 11 1124
Q ss_pred cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
.+|+++....- ...+....+.|+++|+++..
T Consensus 236 ~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 68988864321 23677788999999998764
No 413
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=62.41 E-value=2.5e+02 Score=31.01 Aligned_cols=183 Identities=14% Similarity=0.051 Sum_probs=106.3
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--------CC------------CCeEEEEecccC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--------TN------------PKLEFVVANIAD 94 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--------~~------------~~i~~~~~Di~~ 94 (433)
.+|.=||+|+-...+..+... ..+..|+..|.+++.++.+.++. .. .++++. .|++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 381 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTAT--KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRG 381 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHH
Confidence 478899998766553332210 12369999999999988876543 00 122221 12111
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccC-CchhhHHHhhhcCCCcccccccee-eeec
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF-NPIYDLYEKLSRKPKWTEYTQVRT-YRCL 172 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~-~p~~~~~~~~~~~~~W~~~~~~r~-~~m~ 172 (433)
-...|+|+-. +.+.++-...++.++-+.++|+..+. .+++ -++.++........ ++..-+. .+-.
T Consensus 382 -------~~~adlViEa-v~E~l~~K~~v~~~l~~~~~~~~ila--snTS~l~i~~la~~~~~p~---r~~g~HffnP~~ 448 (699)
T TIGR02440 382 -------FKDVDIVIEA-VFEDLALKHQMVKDIEQECAAHTIFA--SNTSSLPIGQIAAAASRPE---NVIGLHYFSPVE 448 (699)
T ss_pred -------hccCCEEEEe-ccccHHHHHHHHHHHHhhCCCCcEEE--eCCCCCCHHHHHHhcCCcc---cEEEEecCCccc
Confidence 1456888765 34455556788999999999986543 3333 34444443332211 1111111 1112
Q ss_pred cccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 173 LFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 173 pl~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
-.+-++.+.+..|++++.+.+...+..-+-..|+..-.| .+...++..+.++-|.+++..|
T Consensus 449 ~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~p---------Gfi~nRl~~~~~~Ea~~l~~~G 509 (699)
T TIGR02440 449 KMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKA---------GFYVNRILAPYMNEAARLLLEG 509 (699)
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEcccc---------chHHHHHHHHHHHHHHHHHHCC
Confidence 235778888999999988888777665544444442223 3666777777777777777655
No 414
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=61.77 E-value=13 Score=31.87 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=24.3
Q ss_pred EECCCCC--hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhh
Q psy11646 39 DVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79 (433)
Q Consensus 39 DIGcG~G--~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~ 79 (433)
|||++.| ..+..++.+..... .+++++|.+|..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~-~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPG-GRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS---SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCC-CEEEEEECCHHHHHHHhHH
Confidence 8999999 55433332222222 5899999999999988888
No 415
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=61.63 E-value=53 Score=31.14 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=54.1
Q ss_pred cCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--ccccc-ccC
Q psy11646 29 FKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--NLESI-FLA 103 (433)
Q Consensus 29 l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~l~~~-~~~ 103 (433)
....++.+||-.||. .|..+..++. . .+ .++++++.++...+.+++. +.. .+........ .+... ...
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~-~--~g-~~v~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~~~i~~~~~~~ 207 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAK-A--LG-ARVIAAASSEEKLALARAL-GAD--HVIDYRDPDLRERVKALTGGR 207 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHH-H--hC-CEEEEEeCCHHHHHHHHHc-CCc--eeeecCCccHHHHHHHHcCCC
Confidence 344578899999983 3333322222 1 22 5799999998888887653 111 1111111000 01111 113
Q ss_pred cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.+|+++.+..- ..+..+.+.++++|.++...
T Consensus 208 ~~d~v~~~~g~-------~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 208 GVDVVYDPVGG-------DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CcEEEEECccH-------HHHHHHHHhhccCCEEEEEc
Confidence 58888764331 24556678899999887653
No 416
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=61.45 E-value=56 Score=31.41 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=55.6
Q ss_pred hcCCCCCCEEEEECCCCC--hhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc----cc-c
Q psy11646 28 QFKWTDNESVLDVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL----ES-I 100 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G--~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l----~~-~ 100 (433)
.....++.+||=.|++.| ..+..++. ..+ .+++.++.++...+.++... . .. ..+...... .. .
T Consensus 161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~---~~g-~~v~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~ 231 (342)
T cd08266 161 RARLRPGETVLVHGAGSGVGSAAIQIAK---LFG-ATVIATAGSEDKLERAKELG-A---DY-VIDYRKEDFVREVRELT 231 (342)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHH---HcC-CEEEEEeCCHHHHHHHHHcC-C---Ce-EEecCChHHHHHHHHHh
Confidence 344567889998888643 33322222 123 58899999988777775431 1 11 112221111 00 1
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
....+|+++.+..- ..+.++.+.++++|.++...
T Consensus 232 ~~~~~d~~i~~~g~-------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 232 GKRGVDVVVEHVGA-------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCCCCcEEEECCcH-------HHHHHHHHHhhcCCEEEEEe
Confidence 12468988875442 24566778899999987653
No 417
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=60.78 E-value=22 Score=30.90 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc
Q psy11646 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL 97 (433)
Q Consensus 18 ~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l 97 (433)
.+.+|+..+......+ .-|||+|=|.|..- ..+...+|.. +++.+|-.-..-..+ ..+.-.++++|+.+. +
T Consensus 14 QR~~L~~a~~~v~~~~-G~VlElGLGNGRTy-dHLRe~~p~R--~I~vfDR~l~~hp~~----~P~~~~~ilGdi~~t-l 84 (160)
T PF12692_consen 14 QRDCLNWAAAQVAGLP-GPVLELGLGNGRTY-DHLREIFPDR--RIYVFDRALACHPSS----TPPEEDLILGDIRET-L 84 (160)
T ss_dssp HHHHHHHHHHHTTT---S-EEEE--TTSHHH-HHHHHH--SS---EEEEESS--S-GGG-------GGGEEES-HHHH-H
T ss_pred HHHHHHHHHHHhcCCC-CceEEeccCCCccH-HHHHHhCCCC--eEEEEeeecccCCCC----CCchHheeeccHHHH-h
Confidence 4567777777775444 56999999999876 7778888876 899998643211100 112335677777653 2
Q ss_pred cc--cccCcEeEEEEcccccchhhH----HHHHHHHHHhccCCCEEEE
Q psy11646 98 ES--IFLAKFNKIFSFYCLHWVQDQ----RQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 98 ~~--~~~~~fD~Vis~~~l~~~~d~----~~~l~~i~~~LkpGG~lll 139 (433)
+. ......-++..-...+.-+.- ...-.-+..+|.|||.++-
T Consensus 85 ~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 85 PALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 22 222334444443333332211 1123456788999998764
No 418
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=60.33 E-value=28 Score=32.45 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=59.4
Q ss_pred HHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEEccccccchHHHHHHhcCCCC
Q psy11646 122 QAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEK 201 (433)
Q Consensus 122 ~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iqgDi~~~~t~~~il~~~~~~~ 201 (433)
..+..+.+..-|.|.++.++++..+..++....... +++..+-+|-+.+.....+. ..
T Consensus 86 TTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----------------~NIiPIl~DAr~P~~Y~~lv-----~~ 143 (229)
T PF01269_consen 86 TTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----------------PNIIPILEDARHPEKYRMLV-----EM 143 (229)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----------------TTEEEEES-TTSGGGGTTTS-------
T ss_pred CccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----------------CceeeeeccCCChHHhhccc-----cc
Confidence 457778888999999998887766655555433322 33444555555544443221 27
Q ss_pred CeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEe
Q psy11646 202 VDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIF 250 (433)
Q Consensus 202 ~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif 250 (433)
+|++.+|.+-. .=+..+..-+...|++||+|++-+=
T Consensus 144 VDvI~~DVaQp-------------~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 144 VDVIFQDVAQP-------------DQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEEEEEE-SST-------------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccEEEecCCCh-------------HHHHHHHHHHHhhccCCcEEEEEEe
Confidence 89999998743 1234456678889999999987663
No 419
>PRK08324 short chain dehydrogenase; Validated
Probab=60.22 E-value=37 Score=37.22 Aligned_cols=107 Identities=11% Similarity=0.128 Sum_probs=63.0
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC-CCCeEEEEecccCCcc-ccc------ccCc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-NPKLEFVVANIADQNL-ESI------FLAK 104 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~-~~~i~~~~~Di~~~~l-~~~------~~~~ 104 (433)
++.+||=.|++.| .+..++..+...+ .+|+++|.++..++.+.+... ..++.++.+|+.+..- ... ..+.
T Consensus 421 ~gk~vLVTGasgg-IG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAAGG-IGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4678888886444 3324443333344 689999999987776655441 1467888889876321 110 1246
Q ss_pred EeEEEEcccccchh--------h-----------HHHHHHHHHHhccC---CCEEEEEe
Q psy11646 105 FNKIFSFYCLHWVQ--------D-----------QRQAISNIYNLLMP---GGEVLLLL 141 (433)
Q Consensus 105 fD~Vis~~~l~~~~--------d-----------~~~~l~~i~~~Lkp---GG~lll~~ 141 (433)
+|+|+.+....... + ...+++.+.+.+++ ||.+++..
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 89999876532210 0 22345556666665 67777653
No 420
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=59.83 E-value=44 Score=32.41 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=52.5
Q ss_pred CCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 32 TDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 32 ~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
.++.+||=+|||. |.++ ..+++.. +...++++|.++..++.|.+.. ..|..+. ....+|+|+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a-~q~ak~~--G~~~v~~~~~~~~rl~~a~~~~--------~i~~~~~-----~~~g~Dvvid 206 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLL-ARLTKAA--GGSPPAVWETNPRRRDGATGYE--------VLDPEKD-----PRRDYRAIYD 206 (308)
T ss_pred cCCCcEEEECCCHHHHHH-HHHHHHc--CCceEEEeCCCHHHHHhhhhcc--------ccChhhc-----cCCCCCEEEE
Confidence 3577899888763 2233 2233332 3235778899888777665421 1111110 1145898886
Q ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.-.- ...+....+.|+++|++++..
T Consensus 207 ~~G~------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 207 ASGD------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CCCC------HHHHHHHHHhhhcCcEEEEEe
Confidence 5441 235677889999999998764
No 421
>KOG1253|consensus
Probab=59.77 E-value=5.6 Score=41.15 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccc-cccCcEeE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLES-IFLAKFNK 107 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~-~~~~~fD~ 107 (433)
++.+|||.=|++|--+++++... +. ..++++-|.++..++..+++.. ...++-...|+...-... .....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El-~~-v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKEL-PG-VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHh-cc-hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 56789999999999887776544 33 3689999999999998888772 123344445543321111 11267888
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|=.-. ......++....+.++.||.++++.
T Consensus 187 IDLDP----yGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 187 IDLDP----YGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred EecCC----CCCccHHHHHHHHHhhcCCEEEEEe
Confidence 74411 1234567888888999999998864
No 422
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=59.55 E-value=63 Score=31.12 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=57.5
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEe
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFN 106 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD 106 (433)
......++.+||=.|+ |..+..+ .+.....+.++++++.+++..+.+++ ++. ... .+.... .. ...+|
T Consensus 149 ~~~~~~~g~~vlV~g~--g~vg~~~-~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~---~~~-~~~~~~-~~---~~~~d 216 (319)
T cd08242 149 EQVPITPGDKVAVLGD--GKLGLLI-AQVLALTGPDVVLVGRHSEKLALARR-LGV---ETV-LPDEAE-SE---GGGFD 216 (319)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHH-HHHHHHcCCeEEEEcCCHHHHHHHHH-cCC---cEE-eCcccc-cc---CCCCC
Confidence 3445567889988874 5555333 22222223579999999999998887 321 111 111111 11 25689
Q ss_pred EEEEcccccchhhHHHHHHHHHHhccCCCEEEE
Q psy11646 107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
+++-... ....+....+.|+++|.++.
T Consensus 217 ~vid~~g------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 217 VVVEATG------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEECCC------ChHHHHHHHHHhhcCCEEEE
Confidence 8887532 13356677889999999886
No 423
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=59.46 E-value=1.2e+02 Score=27.60 Aligned_cols=48 Identities=31% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHH
Q psy11646 198 DDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVV 256 (433)
Q Consensus 198 ~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~ 256 (433)
....+|+|++...-.... | ....+.-..++|++||.+++..+......
T Consensus 95 ~~~~fD~vi~~~~l~~~~----~-------~~~~l~~~~~~L~~~G~l~~~~~~~~~~~ 142 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWCD----D-------LSQALSELARVLKPGGLLAFSTFGPGTLH 142 (240)
T ss_pred CCCceeEEEEhhhhhhcc----C-------HHHHHHHHHHHcCCCcEEEEEeCCccCHH
Confidence 345789998876422110 1 23467778899999999998876655543
No 424
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=58.45 E-value=58 Score=32.45 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=56.8
Q ss_pred hcCCCCCCEEEEECCCCChhHH--HHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--cc----cc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTS--KLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--NL----ES 99 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~--~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~l----~~ 99 (433)
....+++.+||=.|+| .... ..+++.. +..+++++|.+++.++.+++. +.. .++ +..+. .. ..
T Consensus 181 ~~~~~~g~~VlV~G~G--~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~l-Ga~--~~i--~~~~~~~~~~~~v~~ 251 (368)
T cd08300 181 TAKVEPGSTVAVFGLG--AVGLAVIQGAKAA--GASRIIGIDINPDKFELAKKF-GAT--DCV--NPKDHDKPIQQVLVE 251 (368)
T ss_pred hcCCCCCCEEEEECCC--HHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc-CCC--EEE--cccccchHHHHHHHH
Confidence 3455789999999864 3331 2233322 312799999999999988653 211 111 21111 01 11
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL 141 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~ 141 (433)
...+.+|+|+-.-. -...+....+.++++ |+++...
T Consensus 252 ~~~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 252 MTDGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred HhCCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEc
Confidence 11236898876432 123567778899887 9888754
No 425
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.99 E-value=36 Score=36.73 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=57.2
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-cccCcEeEEEEccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFLAKFNKIFSFYC 113 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~~ 113 (433)
.+|+=+|+ |.++..+. +.+...+..++.+|.+++.++.+++. +.....+|..+...-. ..-++.|.+++...
T Consensus 401 ~~vII~G~--Gr~G~~va-~~L~~~g~~vvvID~d~~~v~~~~~~----g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIG-RLLMANKMRITVLERDISAVNLMRKY----GYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecC--chHHHHHH-HHHHhCCCCEEEEECCHHHHHHHHhC----CCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 45665555 55553333 22223336899999999999998763 5778899988643221 12256777776433
Q ss_pred ccchhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 114 LHWVQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 114 l~~~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
=. + ....+-...|.+.|...++.-..
T Consensus 474 d~--~-~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 474 EP--E-DTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred CH--H-HHHHHHHHHHHHCCCCeEEEEeC
Confidence 11 1 11123334555678877776543
No 426
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=56.94 E-value=60 Score=32.38 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=56.7
Q ss_pred hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC--Cc----cccc
Q psy11646 28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD--QN----LESI 100 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~--~~----l~~~ 100 (433)
....+++.+||=.|+|. |..+ ..+++.. +..+++++|.+++.++.|++.- .. .++ |..+ .. +...
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a-~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~~G-a~--~~i--~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSV-IQGARMA--KASRIIAIDINPAKFELAKKLG-AT--DCV--NPNDYDKPIQEVIVEI 251 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHH-HHHHHHc--CCCeEEEEcCCHHHHHHHHHhC-CC--eEE--cccccchhHHHHHHHH
Confidence 34557899999998753 2222 2233322 2127999999999999987642 11 111 2111 00 1111
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL 141 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~ 141 (433)
..+.+|+|+-.-.- ...+....+.+++| |++++..
T Consensus 252 ~~~g~d~vid~~G~------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 252 TDGGVDYSFECIGN------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred hCCCCCEEEECCCC------HHHHHHHHHHhhcCCCeEEEEe
Confidence 11357888764331 33567778889886 9887654
No 427
>PRK04457 spermidine synthase; Provisional
Probab=56.34 E-value=65 Score=30.75 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=44.6
Q ss_pred CCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCC-HHHHHHHHhcccce-eEEe
Q psy11646 200 EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRN-VVCLETKFQIFFEN-VSIA 272 (433)
Q Consensus 200 ~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~-~~~~~~~l~~~F~~-v~~~ 272 (433)
..+|+|++|.... .+.. ........+..+...|+|||.|++-++.... ...+...++..|.. +.+.
T Consensus 135 ~~yD~I~~D~~~~-~~~~------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~ 202 (262)
T PRK04457 135 HSTDVILVDGFDG-EGII------DALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLEL 202 (262)
T ss_pred CCCCEEEEeCCCC-CCCc------cccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEE
Confidence 4799999996322 1211 0111245667788899999999997765544 57788899999985 4444
No 428
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=56.05 E-value=50 Score=32.34 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=56.5
Q ss_pred HhcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcE-EEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-----cccc
Q psy11646 27 DQFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVK-LVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-----NLES 99 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~-v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-----~l~~ 99 (433)
.....+++.+||=.|+|. |..+.. +++. .+ .+ +++++.+++..+.+++. +.. .++..+-... .+..
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~-lak~--~G-~~~v~~~~~~~~~~~~~~~~-g~~--~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAA-VAKA--FG-ATKVVVTDIDPSRLEFAKEL-GAT--HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHH-HHHH--cC-CcEEEEECCCHHHHHHHHHc-CCc--EEeccccccchhHHHHHHH
Confidence 344557888998877653 333322 2222 22 34 89999888888877653 111 1111110000 0111
Q ss_pred -cccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 100 -IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 100 -~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.....+|+|+-...- ...+....+.|+++|+++...
T Consensus 229 ~~~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 229 LLGGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HhCCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 112458999875431 225677889999999987653
No 429
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=56.04 E-value=86 Score=31.75 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=58.9
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-Ccc----ccc-cc
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-QNL----ESI-FL 102 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~~l----~~~-~~ 102 (433)
....++.+||=.|+|.=......+++.. +...++.+|.++.-++.|++. + ...+ +... ..+ ... ..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~-G---a~~v--~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSF-G---CETV--DLSKDATLPEQIEQILGE 252 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHc-C---CeEE--ecCCcccHHHHHHHHcCC
Confidence 3456788887777653222212233332 223567789999888888874 2 2211 1111 111 111 11
Q ss_pred CcEeEEEEcccccc--------hhhHHHHHHHHHHhccCCCEEEEEec
Q psy11646 103 AKFNKIFSFYCLHW--------VQDQRQAISNIYNLLMPGGEVLLLLN 142 (433)
Q Consensus 103 ~~fD~Vis~~~l~~--------~~d~~~~l~~i~~~LkpGG~lll~~~ 142 (433)
..+|+|+-.-.-.. ..+...++.+..+++++||++++...
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 35898886544221 01223578888999999999988654
No 430
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=55.86 E-value=1.4e+02 Score=33.10 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=103.5
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------C------------CCeEEEEecccC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------N------------PKLEFVVANIAD 94 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------~------------~~i~~~~~Di~~ 94 (433)
.+|-=||+|+-...+..+.. ..+..|+..|.+++.++.+.++.. . .++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a---~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV---DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH---hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH
Confidence 47889999875544333221 223799999999999988766540 0 112211 12111
Q ss_pred CcccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCcccccccee-eeecc
Q psy11646 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT-YRCLL 173 (433)
Q Consensus 95 ~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~-~~m~p 173 (433)
-...|+|+-. +.+.++-..++++++-++++|+..+.-.+ ..-++.++........ ++..-+. .+...
T Consensus 412 -------~~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNT-Ssl~i~~la~~~~~p~---r~ig~Hff~P~~~ 479 (737)
T TIGR02441 412 -------FKNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNT-SALPIKDIAAVSSRPE---KVIGMHYFSPVDK 479 (737)
T ss_pred -------hccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcC-CCCCHHHHHhhcCCcc---ceEEEeccCCccc
Confidence 1456777654 44555556789999999999997654322 2223333333332211 1111111 11123
Q ss_pred ccCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCC
Q psy11646 174 FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPG 242 (433)
Q Consensus 174 l~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~g 242 (433)
.+-++.+.+..|++++..........-+-..|+..-.| .+....+..+-++-|.+++..|
T Consensus 480 m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p---------GFi~NRi~~~~~~ea~~lv~eG 539 (737)
T TIGR02441 480 MQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGP---------GFYTTRCLGPMLAEVIRLLQEG 539 (737)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcC---------CchHHHHHHHHHHHHHHHHHcC
Confidence 45678888999999888888777665444444443233 2455566666666666666554
No 431
>KOG2912|consensus
Probab=55.63 E-value=40 Score=33.18 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=46.6
Q ss_pred EEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC----CCCeEEEEecccCCcccc----cccCcEeEEE
Q psy11646 38 LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLES----IFLAKFNKIF 109 (433)
Q Consensus 38 LDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~----~~~i~~~~~Di~~~~l~~----~~~~~fD~Vi 109 (433)
+|||.|..+.- .++.... .+ +...++|+....+..|+.+.. ...+.+++......-+.+ ..+..||.+.
T Consensus 107 iDIgtgasci~-~llg~rq-~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912|consen 107 IDIGTGASCIY-PLLGARQ-NN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred eeccCchhhhH-Hhhhchh-cc-ceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEe
Confidence 79988887765 4443322 22 688999999999999998872 234444444222111221 1235699999
Q ss_pred Eccccc
Q psy11646 110 SFYCLH 115 (433)
Q Consensus 110 s~~~l~ 115 (433)
|+..+.
T Consensus 184 cNPPFf 189 (419)
T KOG2912|consen 184 CNPPFF 189 (419)
T ss_pred cCCchh
Confidence 988765
No 432
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=55.52 E-value=56 Score=31.88 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=55.6
Q ss_pred hcCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcE-EEEEeCCHHHHHHHHhhcCCCCeEEEEecccC-Ccccccc-cC
Q psy11646 28 QFKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVK-LVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD-QNLESIF-LA 103 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~-v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~-~~l~~~~-~~ 103 (433)
.....++.+||-.|+|. |..+..++ +. .+ .+ +++++-++...+.+++. +. ..+....-.. ..+.... ..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA-~~--~G-~~~v~~~~~~~~~~~~l~~~-g~--~~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWL-KI--LG-AKRVIAVDIDDEKLAVAREL-GA--DDTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHH-HH--cC-CCEEEEEcCCHHHHHHHHHc-CC--CEEecCccccHHHHHHHhCCC
Confidence 34456788999998644 33332222 22 22 34 99999888888877543 11 1111111000 0011111 13
Q ss_pred cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.+|+++.+.. ....+..+.+.|+++|+++...
T Consensus 227 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAAG------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 4899986521 1345677889999999987653
No 433
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=55.34 E-value=19 Score=32.67 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=57.0
Q ss_pred CCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccchhh--
Q psy11646 42 CGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD-- 119 (433)
Q Consensus 42 cG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d-- 119 (433)
|.+|..+..++.....++ .+||++=-++.-+..- .++...+.|+.+.......-..||.|++.+...+..+
T Consensus 7 gAsG~~Gs~i~~EA~~RG-HeVTAivRn~~K~~~~------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~ 79 (211)
T COG2910 7 GASGKAGSRILKEALKRG-HEVTAIVRNASKLAAR------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDE 79 (211)
T ss_pred ecCchhHHHHHHHHHhCC-CeeEEEEeChHhcccc------ccceeecccccChhhhHhhhcCCceEEEeccCCCCChhH
Confidence 568888878888777666 8999998887654321 4677888888764321122356999999776553322
Q ss_pred -HHHHHHHHHHhccCCC
Q psy11646 120 -QRQAISNIYNLLMPGG 135 (433)
Q Consensus 120 -~~~~l~~i~~~LkpGG 135 (433)
.....+.+...|+.-|
T Consensus 80 ~~~k~~~~li~~l~~ag 96 (211)
T COG2910 80 LHSKSIEALIEALKGAG 96 (211)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 2344566666776533
No 434
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=55.32 E-value=1e+02 Score=30.09 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=40.7
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF 111 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~ 111 (433)
-++.+|+=+|+|. .+..++..+...+..+++.++.+++..+...+.++ .... +..+ +.+. -...|+|++.
T Consensus 176 l~~~~V~ViGaG~--iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---~~~~--~~~~--~~~~-l~~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGAGE--MGELAAKHLAAKGVAEITIANRTYERAEELAKELG---GNAV--PLDE--LLEL-LNEADVVISA 245 (311)
T ss_pred ccCCEEEEECcHH--HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC---CeEE--eHHH--HHHH-HhcCCEEEEC
Confidence 3688999999865 33222222222233589999999875543333332 1222 1111 1111 1457999987
Q ss_pred ccccch
Q psy11646 112 YCLHWV 117 (433)
Q Consensus 112 ~~l~~~ 117 (433)
-.-.+.
T Consensus 246 t~~~~~ 251 (311)
T cd05213 246 TGAPHY 251 (311)
T ss_pred CCCCch
Confidence 765443
No 435
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=54.31 E-value=79 Score=31.44 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-cccccccCcEeEEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLESIFLAKFNKIFS 110 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~~~~~~~fD~Vis 110 (433)
.++.+||=.|+|.=......+++.. + .++++++.++.....+.+.++ ..... +..+. .+... .+.+|+|+-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--G-a~vi~~~~~~~~~~~~~~~~G---a~~vi-~~~~~~~~~~~-~~~~D~vid 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--G-LKVTVISSSSNKEDEAINRLG---ADSFL-VSTDPEKMKAA-IGTMDYIID 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--C-CEEEEEeCCcchhhhHHHhCC---CcEEE-cCCCHHHHHhh-cCCCCEEEE
Confidence 5788988888753222212233322 2 578888877655433333332 11111 11110 11111 134788876
Q ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 111 FYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 111 ~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.-. ....+.+..+.|++||+++...
T Consensus 254 ~~g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 254 TVS------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCC------CHHHHHHHHHHhcCCcEEEEeC
Confidence 433 1235677889999999988753
No 436
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=54.25 E-value=29 Score=35.65 Aligned_cols=67 Identities=25% Similarity=0.264 Sum_probs=42.6
Q ss_pred CCCCCeEEEecCCCCCCCCCc----h-------hHHHHHHHHHHHHHHHHHhccCCCeEEEEEe---ecCCHHHHHHHHh
Q psy11646 198 DDEKVDLVVFDGAPDVTGLHD----L-------DEHLQGLLLIGALNITTFLLKPGGTFVGKIF---RSRNVVCLETKFQ 263 (433)
Q Consensus 198 ~~~~~dlVvsD~ap~~tG~~~----~-------D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif---~g~~~~~~~~~l~ 263 (433)
....+|.|++|.....+|.-. . +-.....+-...|.-|..+|+|||.+|.-.. ...+...+...++
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 345799999998877777521 1 1122234455666778889999999996544 3455555555554
Q ss_pred c
Q psy11646 264 I 264 (433)
Q Consensus 264 ~ 264 (433)
.
T Consensus 386 ~ 386 (426)
T TIGR00563 386 E 386 (426)
T ss_pred h
Confidence 3
No 437
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=54.11 E-value=61 Score=27.57 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=40.8
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
.+.+|+-+|+| ..+..++..+...+..+++.+|.+++..+...+......+.....|..+. .+..|+|++.-
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL------LAEADLIINTT 89 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc------cccCCEEEeCc
Confidence 46789999986 33323333222222358999999988776655443111111112222111 25689999876
Q ss_pred ccc
Q psy11646 113 CLH 115 (433)
Q Consensus 113 ~l~ 115 (433)
...
T Consensus 90 ~~~ 92 (155)
T cd01065 90 PVG 92 (155)
T ss_pred CCC
Confidence 543
No 438
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=53.87 E-value=51 Score=32.55 Aligned_cols=73 Identities=21% Similarity=0.114 Sum_probs=45.1
Q ss_pred ceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCC-CCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCH
Q psy11646 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVT-GLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNV 255 (433)
Q Consensus 177 v~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~t-G~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~ 255 (433)
+...++|..+... ....+|+|++|...... +... .....+....+..+.++|++||.++.-+-...+.
T Consensus 232 i~~~~~D~~~l~~--------~~~~~D~Iv~dPPyg~~~~~~~---~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~ 300 (329)
T TIGR01177 232 FFVKRGDATKLPL--------SSESVDAIATDPPYGRSTTAAG---DGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDL 300 (329)
T ss_pred CeEEecchhcCCc--------ccCCCCEEEECCCCcCcccccC---CchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCH
Confidence 4555666554211 23579999999543221 1111 1223556778888999999999998877666566
Q ss_pred HHHHH
Q psy11646 256 VCLET 260 (433)
Q Consensus 256 ~~~~~ 260 (433)
..+..
T Consensus 301 ~~~~~ 305 (329)
T TIGR01177 301 ESLAE 305 (329)
T ss_pred HHHHh
Confidence 55443
No 439
>PRK08265 short chain dehydrogenase; Provisional
Probab=53.64 E-value=89 Score=29.23 Aligned_cols=78 Identities=8% Similarity=0.177 Sum_probs=47.4
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc-cc------ccCcE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE-SI------FLAKF 105 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-~~------~~~~f 105 (433)
.+.++|=.|++.| .+..+...+...+ .+|+.++.++..++...+.. ..++.++.+|+.+..-- .. ..+..
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAG-ARVAIVDIDADNGAAVAASL-GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh-CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 3567888886554 4434444443344 69999999887655554443 24678888998764211 10 11467
Q ss_pred eEEEEccc
Q psy11646 106 NKIFSFYC 113 (433)
Q Consensus 106 D~Vis~~~ 113 (433)
|+++.+..
T Consensus 82 d~lv~~ag 89 (261)
T PRK08265 82 DILVNLAC 89 (261)
T ss_pred CEEEECCC
Confidence 98887654
No 440
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=53.48 E-value=50 Score=32.82 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc----cccccC
Q psy11646 29 FKWTDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL----ESIFLA 103 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l----~~~~~~ 103 (433)
....++.+||=.|+|. |..+ ..+++.. +...++++|.++...+.+++. + .... .+.....+ ......
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~-~~la~~~--G~~~v~~~~~~~~k~~~~~~~-g---~~~~-i~~~~~~~~~~v~~~~~~ 253 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAA-VMAAKIA--GCTTIIAVDIVDSRLELAKEL-G---ATHV-INPKEEDLVAAIREITGG 253 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHH-HHHHHHc--CCCeEEEEeCCHHHHHHHHHc-C---CcEE-ecCCCcCHHHHHHHHhCC
Confidence 3446788999887643 2233 2233332 322699999999988887653 1 1111 11111111 111124
Q ss_pred cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.+|+|+-.-.- ...+..+.+.|+++|.++...
T Consensus 254 ~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 254 GVDYALDTTGV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCcEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence 68988864321 235677889999999988753
No 441
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=53.34 E-value=61 Score=31.86 Aligned_cols=102 Identities=12% Similarity=0.151 Sum_probs=57.1
Q ss_pred HhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----cccc
Q psy11646 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SIFL 102 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~~~ 102 (433)
......++.+||=.|+ |..+..+++-....+..++++++.+++..+.+++. + .... .+..+..+. ....
T Consensus 166 ~~~~~~~g~~vlI~g~--g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-g---a~~~-i~~~~~~~~~~l~~~~~ 238 (351)
T cd08233 166 RRSGFKPGDTALVLGA--GPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-G---ATIV-LDPTEVDVVAEVRKLTG 238 (351)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-C---CCEE-ECCCccCHHHHHHHHhC
Confidence 3444567889988875 44442222111112322789999999988888653 2 1111 122111111 1111
Q ss_pred -CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 103 -AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 103 -~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
..+|+|+-...- ...+....+.|+++|.++...
T Consensus 239 ~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 239 GGGVDVSFDCAGV------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCCEEEECCCC------HHHHHHHHHhccCCCEEEEEc
Confidence 348999875431 235677888999999987753
No 442
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=53.25 E-value=28 Score=33.90 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=45.5
Q ss_pred CCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc----CCCCeEEE----EecccCCcc-cc-cccCcEeEEEEc
Q psy11646 42 CGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH----TNPKLEFV----VANIADQNL-ES-IFLAKFNKIFSF 111 (433)
Q Consensus 42 cG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~----~~~~i~~~----~~Di~~~~l-~~-~~~~~fD~Vis~ 111 (433)
.|+|+.+..+.++....+..+++.+|.++..+-..++.+ ...++.+. .+|+.+... .. +.....|+|+-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 467888877776665554458999999999998888777 33456554 778866432 11 223578999999
Q ss_pred ccccchh
Q psy11646 112 YCLHWVQ 118 (433)
Q Consensus 112 ~~l~~~~ 118 (433)
.++-|++
T Consensus 85 AA~KhVp 91 (293)
T PF02719_consen 85 AALKHVP 91 (293)
T ss_dssp -----HH
T ss_pred hhcCCCC
Confidence 9998874
No 443
>PRK04266 fibrillarin; Provisional
Probab=52.83 E-value=35 Score=31.85 Aligned_cols=57 Identities=30% Similarity=0.335 Sum_probs=36.5
Q ss_pred cCceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEE
Q psy11646 175 TGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKI 249 (433)
Q Consensus 175 ~gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Ki 249 (433)
.++..+.+|...+..... +. ..+|++++|+.. ..+ ...++..+.++|+|||.+++-+
T Consensus 120 ~nv~~i~~D~~~~~~~~~----l~-~~~D~i~~d~~~----------p~~---~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 120 KNIIPILADARKPERYAH----VV-EKVDVIYQDVAQ----------PNQ---AEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred CCcEEEECCCCCcchhhh----cc-ccCCEEEECCCC----------hhH---HHHHHHHHHHhcCCCcEEEEEE
Confidence 567778888764321111 12 349999998652 111 2346778888999999998843
No 444
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=52.33 E-value=1.7e+02 Score=26.06 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=75.2
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcC--------C------------CCeEEEEecccCC
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--------N------------PKLEFVVANIADQ 95 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~--------~------------~~i~~~~~Di~~~ 95 (433)
+|.=||+|+-......+... . +.+|+.+|.+++.++.++++.. . .++. ...|++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--A-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--T-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHh--C-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH
Confidence 35567887654332222221 3 3799999999999988877550 0 1222 12233221
Q ss_pred cccccccCcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeee---c
Q psy11646 96 NLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRC---L 172 (433)
Q Consensus 96 ~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m---~ 172 (433)
...|+|+-.-. +.++-...+++++.+.++|+-.+.-.. ..-+..++...+. ...|+..| .
T Consensus 77 -------~~adlViEai~-E~l~~K~~~~~~l~~~~~~~~ilasnT-Ssl~i~~la~~~~--------~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 77 -------VDADLVIEAIP-EDLELKQELFAELDEICPPDTILASNT-SSLSISELAAALS--------RPERFIGMHFFN 139 (180)
T ss_dssp -------CTESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE---SSS-HHHHHTTSS--------TGGGEEEEEE-S
T ss_pred -------hhhheehhhcc-ccHHHHHHHHHHHHHHhCCCceEEecC-CCCCHHHHHhccC--------cCceEEEEeccc
Confidence 25788876543 444456788999999999887655432 2223333322211 12223332 2
Q ss_pred c---ccCceEEEccccccchHHHHHHhcCCCC
Q psy11646 173 L---FTGVIQVQGDITKESTIKEIFSHFDDEK 201 (433)
Q Consensus 173 p---l~gv~~iqgDi~~~~t~~~il~~~~~~~ 201 (433)
| .+-++.+.+..+++.+.+.+...+...+
T Consensus 140 P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~g 171 (180)
T PF02737_consen 140 PPHLMPLVEVVPGPKTSPETVDRVRALLRSLG 171 (180)
T ss_dssp STTT--EEEEEE-TTS-HHHHHHHHHHHHHTT
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHHHCC
Confidence 2 3456777888888888777776665443
No 445
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=52.13 E-value=35 Score=28.91 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=45.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~ 112 (433)
.+.+||=||+|- .+...+..+...+..+++.+..+.+-.+...+.+....+.+.. +++.. .....+|+|+..-
T Consensus 11 ~~~~vlviGaGg--~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~--~~~~~---~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGG--AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIP--LEDLE---EALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSH--HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEE--GGGHC---HHHHTESEEEE-S
T ss_pred CCCEEEEECCHH--HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceee--HHHHH---HHHhhCCeEEEec
Confidence 588999999853 3333333333344457999999987666655554333454443 33322 1125799999977
Q ss_pred cccc
Q psy11646 113 CLHW 116 (433)
Q Consensus 113 ~l~~ 116 (433)
..-+
T Consensus 84 ~~~~ 87 (135)
T PF01488_consen 84 PSGM 87 (135)
T ss_dssp STTS
T ss_pred CCCC
Confidence 6543
No 446
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=52.00 E-value=24 Score=36.24 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc-ccccccCcEeEEEEc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN-LESIFLAKFNKIFSF 111 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~-l~~~~~~~fD~Vis~ 111 (433)
+..+|+=+|+ |..+..++..+ ...+..++.+|.+++.++.+++.. .++.++.+|..+.. +....-..+|.|++.
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L-~~~~~~v~vid~~~~~~~~~~~~~--~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLL-EKEGYSVKLIERDPERAEELAEEL--PNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHHHC--CCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 3578888888 55654444433 233368999999999998887754 35678888886532 111223567888764
Q ss_pred cc
Q psy11646 112 YC 113 (433)
Q Consensus 112 ~~ 113 (433)
..
T Consensus 305 ~~ 306 (453)
T PRK09496 305 TN 306 (453)
T ss_pred CC
Confidence 33
No 447
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=51.37 E-value=78 Score=29.92 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeec----CCHHHHHHHHhcc
Q psy11646 190 IKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRS----RNVVCLETKFQIF 265 (433)
Q Consensus 190 ~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g----~~~~~~~~~l~~~ 265 (433)
....++.....++|+++.|.....+ .... ......++.+.+.|+++|.|+...-.- .....+.+.++..
T Consensus 139 g~~~l~~~~~~~yDvIi~D~~dp~~-~~~~------l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVDLTDPDG-PAPN------LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp HHHHHHTSSST-EEEEEEESSSTTS-CGGG------GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred hHHHHHhccCCcccEEEEeCCCCCC-Cccc------ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 3444444444489999999875322 1111 223446678889999999999876221 1245667788999
Q ss_pred cceeEEec-CCCCcccccceeEEEeec
Q psy11646 266 FENVSIAK-PKSSRNSSIESFIVCQNY 291 (433)
Q Consensus 266 F~~v~~~K-P~~sr~~s~E~~~v~~~~ 291 (433)
|..|..+. +-++-.+..=.|.+|.+.
T Consensus 212 F~~v~~~~~~vP~~~~~~~~~~~~s~~ 238 (246)
T PF01564_consen 212 FPQVKPYTAYVPSYGSGWWSFASASKD 238 (246)
T ss_dssp SSEEEEEEEECTTSCSSEEEEEEEESS
T ss_pred CCceEEEEEEcCeecccceeEEEEeCC
Confidence 99887765 444444444445555443
No 448
>PRK12939 short chain dehydrogenase; Provisional
Probab=51.21 E-value=96 Score=28.42 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=47.3
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCccc-ccc------cC
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLE-SIF------LA 103 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~-~~~------~~ 103 (433)
++.++|=.|++ |..+..++..+...+ .++++++.++..++...+.. ...++.+..+|+.+...- ... .+
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46778877764 444434444333344 68999998887666554433 224688888998763211 000 14
Q ss_pred cEeEEEEcccc
Q psy11646 104 KFNKIFSFYCL 114 (433)
Q Consensus 104 ~fD~Vis~~~l 114 (433)
..|.|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 449
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=51.11 E-value=44 Score=33.72 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=52.8
Q ss_pred CCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEc
Q psy11646 33 DNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSF 111 (433)
Q Consensus 33 ~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~ 111 (433)
++.+|+=+|+|. |..+...+. ..+ .+|+.+|.++..++.+...+.. .+.....+.. .+.+. -..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~---~lG-a~V~v~d~~~~~~~~l~~~~g~-~v~~~~~~~~--~l~~~-l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMAN---GLG-ATVTILDINIDRLRQLDAEFGG-RIHTRYSNAY--EIEDA-VKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHH---HCC-CeEEEEECCHHHHHHHHHhcCc-eeEeccCCHH--HHHHH-HccCCEEEEc
Confidence 456799998873 233322222 223 5899999999887776655421 1111111111 11111 1468999975
Q ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 112 YCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 112 ~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
-.+...+.+.-.-++..+.++||+.++-..
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 432111112112355557789998877654
No 450
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=50.46 E-value=59 Score=31.72 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=55.8
Q ss_pred cCCCCCCEEEEECCCCChhHHHH--hcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc--cccCc
Q psy11646 29 FKWTDNESVLDVGCGPGNVTSKL--LLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES--IFLAK 104 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~~~--l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~--~~~~~ 104 (433)
+...++.+||=.|+ |.....+ +++. .+ .+++.++.+++..+.+++. + +... .+.....+.. .....
T Consensus 159 ~~~~~~~~vlV~g~--g~iG~~~~~~a~~--~G-~~vi~~~~~~~~~~~~~~~-g---~~~~-i~~~~~~~~~~~~~~~~ 228 (333)
T cd08296 159 SGAKPGDLVAVQGI--GGLGHLAVQYAAK--MG-FRTVAISRGSDKADLARKL-G---AHHY-IDTSKEDVAEALQELGG 228 (333)
T ss_pred cCCCCCCEEEEECC--cHHHHHHHHHHHH--CC-CeEEEEeCChHHHHHHHHc-C---CcEE-ecCCCccHHHHHHhcCC
Confidence 45567889999985 4444222 2222 23 5899999999888888653 2 1111 1211111111 00134
Q ss_pred EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|+++.... ....+....+.|+++|.++...
T Consensus 229 ~d~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 229 AKLILATAP------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CCEEEECCC------chHHHHHHHHHcccCCEEEEEe
Confidence 788875321 1346777889999999988653
No 451
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=50.26 E-value=88 Score=30.33 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=64.8
Q ss_pred HHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEE---EeecC-CHHHHHHHHhccc
Q psy11646 191 KEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGK---IFRSR-NVVCLETKFQIFF 266 (433)
Q Consensus 191 ~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~K---if~g~-~~~~~~~~l~~~F 266 (433)
.+.+..... ++|+|+.|....+ |-.. .-.-....+-..+.|+++|-|++- .|-.. .....+..++..|
T Consensus 140 ~~~v~~~~~-~fDvIi~D~tdp~-gp~~------~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf 211 (282)
T COG0421 140 VEFLRDCEE-KFDVIIVDSTDPV-GPAE------ALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVF 211 (282)
T ss_pred HHHHHhCCC-cCCEEEEcCCCCC-Cccc------ccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhc
Confidence 444444444 8999999998774 4311 111223456678899999999998 44443 4567888888889
Q ss_pred ceeEEec-CCCCcccccceeEEEeecc
Q psy11646 267 ENVSIAK-PKSSRNSSIESFIVCQNYR 292 (433)
Q Consensus 267 ~~v~~~K-P~~sr~~s~E~~~v~~~~~ 292 (433)
+.+..+- |..+-.+..+.|+++...+
T Consensus 212 ~~~~~~~~~ipt~~~g~~~f~~~s~~~ 238 (282)
T COG0421 212 SIVPPYVAPIPTYPSGFWGFIVASFNK 238 (282)
T ss_pred cccccceeccceecCCceEEEEeecCC
Confidence 8887765 6677777778888888544
No 452
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=50.20 E-value=91 Score=28.88 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHH-hcccceeEEecCCCCc
Q psy11646 227 LLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKF-QIFFENVSIAKPKSSR 278 (433)
Q Consensus 227 L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l-~~~F~~v~~~KP~~sr 278 (433)
.....+..+..+|++||.+++-+-. .....+...+ +..|..|.+.|.-..|
T Consensus 195 ~~~~~i~~~~~~L~~gG~~~~~~~~-~~~~~~~~~l~~~gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 195 FYRRIIAQAPRLLKPGGWLLLEIGY-DQGEAVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred HHHHHHHHHHHhcccCCEEEEEECc-cHHHHHHHHHHhCCCCceEEEeCCCCC
Confidence 3456677788999999999876421 1123333333 3568888888876654
No 453
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=49.75 E-value=63 Score=31.47 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=56.9
Q ss_pred EeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEcccccchhh--HHHHHHHHHHhccCCCEEEEEe
Q psy11646 66 LDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD--QRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 66 vDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~~~~d--~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+...+..-+.++++. .++.+..+|+.+. +.-.+.+..|.++...+-.|+++ ...+..++.+-+.+|.++++-.
T Consensus 292 ~yl~~~~YEsir~n~--~RV~ihha~~iE~-l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 292 AYLDEGVYESIRQNL--RRVAIHHADIIEL-LAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred hhhchhhHHHHHhhh--hheeeecccHHHH-hccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 445667777777765 6789999998764 33234488999999999899875 5778999999999999988754
No 454
>PRK07806 short chain dehydrogenase; Provisional
Probab=49.58 E-value=1.3e+02 Score=27.63 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=55.5
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCH-HHHHHHHhhc--CCCCeEEEEecccCCcc-cccc------c
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP-NMIKHAKNHH--TNPKLEFVVANIADQNL-ESIF------L 102 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~-~~l~~A~~~~--~~~~i~~~~~Di~~~~l-~~~~------~ 102 (433)
.+.++|=.|++.| .+..++..+...+ .+|++++.+. ...+...... ...++.+..+|+.+..- .... .
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3568998887544 3434444443344 6888887653 2233222222 12457788889876321 1100 1
Q ss_pred CcEeEEEEcccccch-------------hhHHHHHHHHHHhccCCCEEEEE
Q psy11646 103 AKFNKIFSFYCLHWV-------------QDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~-------------~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
+..|.|+.+...... .-...+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 357888765532110 01234556666666666776654
No 455
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=49.49 E-value=43 Score=28.51 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=46.1
Q ss_pred CcEEEEEeCCHHHHHHHHhhcCCCCeEEEEec------c-cCCcccccccCcEeEEEEcccccchhhHHHHHHHHHHhcc
Q psy11646 60 VVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN------I-ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLM 132 (433)
Q Consensus 60 ~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~D------i-~~~~l~~~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~Lk 132 (433)
+.+|+.+.-++ -++..++.- +.+...+ . .....+....+.+|+|+..-=-. +.+.+++.+.+.+.
T Consensus 21 g~~V~l~~r~~-~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~---~~~~~l~~l~~~~~ 92 (151)
T PF02558_consen 21 GHDVTLVSRSP-RLEAIKEQG----LTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY---QLEQALQSLKPYLD 92 (151)
T ss_dssp TCEEEEEESHH-HHHHHHHHC----EEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG---GHHHHHHHHCTGEE
T ss_pred CCceEEEEccc-cHHhhhhee----EEEEecccceecccccccCcchhccCCCcEEEEEeccc---chHHHHHHHhhccC
Confidence 36899999888 555544432 2221111 0 00001111237899999864332 34668888999999
Q ss_pred CCCEEEEEeccCCc
Q psy11646 133 PGGEVLLLLNAFNP 146 (433)
Q Consensus 133 pGG~lll~~~~~~p 146 (433)
|+..+++..++...
T Consensus 93 ~~t~iv~~qNG~g~ 106 (151)
T PF02558_consen 93 PNTTIVSLQNGMGN 106 (151)
T ss_dssp TTEEEEEESSSSSH
T ss_pred CCcEEEEEeCCCCc
Confidence 99887776655443
No 456
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=49.38 E-value=48 Score=31.80 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc
Q psy11646 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80 (433)
Q Consensus 19 ~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~ 80 (433)
..++...+.. ...++..|||-=+|+|..+ ..+. ... ...+|+|+++..++.+.++.
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~-~aa~-~~~---r~~ig~e~~~~y~~~~~~r~ 264 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTG-IAAK-NLG---RRFIGIEINPEYVEVALKRL 264 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHH-HHHH-HcC---CceEEEecCHHHHHHHHHHH
Confidence 3555666665 4468999999999999987 3332 222 47999999999999999987
No 457
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=49.05 E-value=1.1e+02 Score=30.48 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=55.5
Q ss_pred cCCCCCCEEEEECCCCChhHH--HHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--c----cccc
Q psy11646 29 FKWTDNESVLDVGCGPGNVTS--KLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--N----LESI 100 (433)
Q Consensus 29 l~~~~~~~VLDIGcG~G~~~~--~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~----l~~~ 100 (433)
....++.+||=.|+| ..+. ..+++.. +...+++++.++...+.+++. +.. .++ +..+. . +...
T Consensus 179 ~~~~~g~~vlI~g~g--~vG~~a~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-g~~--~~v--~~~~~~~~~~~~l~~~ 249 (365)
T cd05279 179 AKVTPGSTCAVFGLG--GVGLSVIMGCKAA--GASRIIAVDINKDKFEKAKQL-GAT--ECI--NPRDQDKPIVEVLTEM 249 (365)
T ss_pred cCCCCCCEEEEECCC--HHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHh-CCC--eec--ccccccchHHHHHHHH
Confidence 345678898888764 4432 2233332 323688999899888888653 211 111 11111 1 1111
Q ss_pred ccCcEeEEEEcccccchhhHHHHHHHHHHhcc-CCCEEEEEe
Q psy11646 101 FLAKFNKIFSFYCLHWVQDQRQAISNIYNLLM-PGGEVLLLL 141 (433)
Q Consensus 101 ~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~Lk-pGG~lll~~ 141 (433)
..+.+|+|+..-. ....+....+.|+ ++|+++...
T Consensus 250 ~~~~~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 250 TDGGVDYAFEVIG------SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred hCCCCcEEEECCC------CHHHHHHHHHHhccCCCEEEEEe
Confidence 1246898886432 1245667788899 999988753
No 458
>PRK08655 prephenate dehydrogenase; Provisional
Probab=48.97 E-value=1.6e+02 Score=30.44 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=47.1
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccccc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH 115 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~ 115 (433)
+|.=|| |.|..+..+...+...+ .+|+++|.++.......... ++.+ ..+... .....|+|+..-...
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G-~~V~v~~r~~~~~~~~a~~~---gv~~-~~~~~e------~~~~aDvVIlavp~~ 69 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKG-FEVIVTGRDPKKGKEVAKEL---GVEY-ANDNID------AAKDADIVIISVPIN 69 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCC-CEEEEEECChHHHHHHHHHc---CCee-ccCHHH------HhccCCEEEEecCHH
Confidence 566676 23333322222221223 58999999887653332222 2221 111111 114569998876654
Q ss_pred chhhHHHHHHHHHHhccCCCEEEE
Q psy11646 116 WVQDQRQAISNIYNLLMPGGEVLL 139 (433)
Q Consensus 116 ~~~d~~~~l~~i~~~LkpGG~lll 139 (433)
.. ..++.++...+++|..++-
T Consensus 70 ~~---~~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 70 VT---EDVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred HH---HHHHHHHHhhCCCCCEEEE
Confidence 33 4667888888888875443
No 459
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.43 E-value=1.5e+02 Score=28.02 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=55.0
Q ss_pred CCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--cccccccCcEe
Q psy11646 31 WTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--NLESIFLAKFN 106 (433)
Q Consensus 31 ~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~l~~~~~~~fD 106 (433)
..++.+||=.|++ .|..+..++. . .+ .+++++..+++..+.+++. + +.....+-... .+... ...+|
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~-~--~g-~~v~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~i~~~-~~~~d 210 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAK-A--LG-ATVTATTRSPERAALLKEL-G---ADEVVIDDGAIAEQLRAA-PGGFD 210 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHhc-C---CcEEEecCccHHHHHHHh-CCCce
Confidence 4678899988863 3344422222 2 22 5799999998888887542 2 22111111110 01111 25689
Q ss_pred EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+++.+.. ...+....+.|+++|+++...
T Consensus 211 ~vl~~~~-------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 211 KVLELVG-------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EEEECCC-------hHHHHHHHHHhccCCEEEEEc
Confidence 9886433 135677789999999987653
No 460
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=48.20 E-value=1.5e+02 Score=28.44 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=54.9
Q ss_pred CCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc----cccccC
Q psy11646 30 KWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL----ESIFLA 103 (433)
Q Consensus 30 ~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l----~~~~~~ 103 (433)
...++.+||=.|+. .|..+..+++ . .+ .++++++.++...+.+++.++.. .+.. ..+..+ .....+
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~-~--~G-~~vi~~~~~~~~~~~~~~~~g~~--~~~~--~~~~~~~~~v~~~~~~ 213 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAK-L--LG-ARVVGIAGSDEKCRWLVEELGFD--AAIN--YKTPDLAEALKEAAPD 213 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHH-H--cC-CEEEEEeCCHHHHHHHHhhcCCc--eEEe--cCChhHHHHHHHhccC
Confidence 34578889888742 3334322332 2 23 58999999988888887644211 1111 111111 111124
Q ss_pred cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
.+|+++..-. ...+....+.++++|+++..
T Consensus 214 ~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 214 GIDVYFDNVG-------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred CceEEEEcch-------HHHHHHHHHhcCCCceEEEE
Confidence 6888876432 23677788999999998764
No 461
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=47.95 E-value=56 Score=35.48 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=56.7
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-cccCcEeEEEEcc
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFLAKFNKIFSFY 112 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~~~fD~Vis~~ 112 (433)
..+|+=+|||. .+..+ ++.+...+..++.+|.+++.++.+++. +.....+|.++...-. ..-++.|.+++.-
T Consensus 400 ~~~vII~G~Gr--~G~~v-a~~L~~~g~~vvvID~d~~~v~~~~~~----g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 400 QPRVIIAGFGR--FGQIV-GRLLLSSGVKMTVLDHDPDHIETLRKF----GMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred cCcEEEEecCh--HHHHH-HHHHHhCCCCEEEEECCHHHHHHHHhc----CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 35788887765 33222 222223336899999999999999763 5778999988753221 1225677777643
Q ss_pred cccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 113 CLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 113 ~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.= . +....+-...+.+.|.-.++.-.
T Consensus 473 ~d--~-~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 473 DD--P-QTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CC--H-HHHHHHHHHHHHhCCCCeEEEEE
Confidence 21 1 11122333445556776665543
No 462
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=47.94 E-value=35 Score=34.36 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=41.6
Q ss_pred EEEECCCCChhHHHHhcccCCCCCc-EEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc-ccccccCcEeEEEEcc
Q psy11646 37 VLDVGCGPGNVTSKLLLPNLPKSVV-KLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN-LESIFLAKFNKIFSFY 112 (433)
Q Consensus 37 VLDIGcG~G~~~~~~l~~~~~~~~~-~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~-l~~~~~~~fD~Vis~~ 112 (433)
|+=+|+ |..+..++..+...... +++..|.+.+.++...+.....++.+.+.|+.+.. +... -...|+|+..-
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDVVINCA 75 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSEEEE-S
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCEEEECC
Confidence 566788 55553333322222223 89999999998887766544468999999987643 2222 24559999754
No 463
>KOG1197|consensus
Probab=47.88 E-value=72 Score=30.58 Aligned_cols=102 Identities=13% Similarity=0.231 Sum_probs=60.3
Q ss_pred HhcCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccc-cC
Q psy11646 27 DQFKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIF-LA 103 (433)
Q Consensus 27 ~~l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~-~~ 103 (433)
+..+.+||.+||--.+ |-|..+..+++ ..+.+++++-.+.+-.+.|+++-...-|.+..-|+.+. ..... ..
T Consensus 140 e~y~vkpGhtVlvhaAAGGVGlll~Ql~r----a~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~-V~kiTngK 214 (336)
T KOG1197|consen 140 EAYNVKPGHTVLVHAAAGGVGLLLCQLLR----AVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDE-VKKITNGK 214 (336)
T ss_pred HhcCCCCCCEEEEEeccccHHHHHHHHHH----hcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHH-HHhccCCC
Confidence 4456689999886544 34444433433 23368889988889899999874222344444454332 11111 23
Q ss_pred cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
..|.++-.-. ...+..-...|||+|.++-.
T Consensus 215 GVd~vyDsvG-------~dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 215 GVDAVYDSVG-------KDTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred Cceeeecccc-------chhhHHHHHHhccCceEEEe
Confidence 4666654333 23556667899999997754
No 464
>PRK07326 short chain dehydrogenase; Provisional
Probab=47.78 E-value=55 Score=29.89 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccC
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIAD 94 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~ 94 (433)
.+.+||=.|+ +|..+..++..+...+ .+|++++.++.......+.. ...++.++.+|+.+
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~ 65 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAELNNKGNVLGLAADVRD 65 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC
Confidence 3567888885 5555545554444444 68999999887666554443 12467788888765
No 465
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=47.52 E-value=1.3e+02 Score=29.86 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=56.1
Q ss_pred hcCCCCCCEEEEECCCCChhHH--HHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--c----ccc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTS--KLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--N----LES 99 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~--~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~----l~~ 99 (433)
....+++.+||=.|+| ..+. ..+++.. +..+++++|.++...+.+++. +.. .++ +.... . +..
T Consensus 179 ~~~~~~g~~vlV~G~g--~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~~-ga~--~~i--~~~~~~~~~~~~~~~ 249 (365)
T cd08277 179 TAKVEPGSTVAVFGLG--AVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKEF-GAT--DFI--NPKDSDKPVSEVIRE 249 (365)
T ss_pred hcCCCCCCEEEEECCC--HHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc-CCC--cEe--ccccccchHHHHHHH
Confidence 3445688999988864 4432 2233332 323799999999998888653 211 111 11110 0 111
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL 141 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~ 141 (433)
.....+|+|+-.-.- ...+....+.++++ |.+++..
T Consensus 250 ~~~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 250 MTGGGVDYSFECTGN------ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred HhCCCCCEEEECCCC------hHHHHHHHHhcccCCCEEEEEc
Confidence 112458988864321 23567778899886 9888764
No 466
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=46.96 E-value=1.1e+02 Score=35.72 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=60.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEeEE
Q psy11646 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFNKI 108 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD~V 108 (433)
....+.++||+|.|+-+=. |. +.|.. ..++.+|+-|.+ .... ......|+++|...... .....+|.+
T Consensus 819 ~~~~~~~~lDLGTGPE~Ri---Ls-liP~~-~pvtmvD~RP~a----e~m~~w~t~T~y~~~DYl~~~~--~~~~~~D~v 887 (1289)
T PF06016_consen 819 VRTDPDHWLDLGTGPECRI---LS-LIPPD-TPVTMVDTRPFA----EPMNCWNTQTQYIQADYLSDAW--WNGTPFDAV 887 (1289)
T ss_dssp TTCCC-CEEEET--TT-CH---HH-CS-TT-SEEEEEESS--S----SSCCCCSTTEEEEES-TTSCCG--GCC---SEE
T ss_pred cccCcceEEEccCCcccee---ee-ccCCC-CceEEEecCCcc----cccchhhhcceeeeecccccee--EecCCCCEE
Confidence 3335789999999997633 32 33444 689999998753 1111 34678899999865432 223679999
Q ss_pred EEcccccch-----hhHHHHHHHHHHhccCCC--EEEEEecc
Q psy11646 109 FSFYCLHWV-----QDQRQAISNIYNLLMPGG--EVLLLLNA 143 (433)
Q Consensus 109 is~~~l~~~-----~d~~~~l~~i~~~LkpGG--~lll~~~~ 143 (433)
.|...|-.. -+..+.++++.+.+++.| ++++..++
T Consensus 888 tailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQLNc 929 (1289)
T PF06016_consen 888 TAILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQLNC 929 (1289)
T ss_dssp EECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE-B-
T ss_pred EEEeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEEecC
Confidence 999888643 257788999999988876 56665544
No 467
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=46.30 E-value=1.6e+02 Score=27.15 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=56.2
Q ss_pred cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCchhhHHHhhhcCCCccccccceeeeeccccCceEEEcc
Q psy11646 104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGD 183 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~~~r~~~m~pl~gv~~iqgD 183 (433)
+.|+|+-.++.+.= -...+..+.+++.+.|.++-.+....+.. ... . ...+| -+.+++++||
T Consensus 32 kPd~IIE~Gi~~GG--Sli~~A~ml~~~~~~~~VigiDIdir~~~---------~~a---~--e~hp~--~~rI~~i~Gd 93 (206)
T PF04989_consen 32 KPDLIIETGIAHGG--SLIFWASMLELLGGKGKVIGIDIDIRPHN---------RKA---I--ESHPM--SPRITFIQGD 93 (206)
T ss_dssp --SEEEEE--TTSH--HHHHHHHHHHHTT---EEEEEES-GTT-----------S-G---G--GG------TTEEEEES-
T ss_pred CCCeEEEEecCCCc--hHHHHHHHHHHhCCCceEEEEeCCcchhc---------hHH---H--hhccc--cCceEEEECC
Confidence 34666666655521 12344556666666777666654221100 000 0 00111 2577899999
Q ss_pred ccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEE
Q psy11646 184 ITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVG 247 (433)
Q Consensus 184 i~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~ 247 (433)
..+.++...+..........+|+-|..-.. .=..+.|+.-..++.+|+.+|+
T Consensus 94 s~d~~~~~~v~~~~~~~~~vlVilDs~H~~------------~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 94 SIDPEIVDQVRELASPPHPVLVILDSSHTH------------EHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SSSTHHHHTSGSS----SSEEEEESS----------------SSHHHHHHHHHHT--TT-EEEE
T ss_pred CCCHHHHHHHHHhhccCCceEEEECCCccH------------HHHHHHHHHhCccCCCCCEEEE
Confidence 999988888888777777888888876211 1144567777888999998877
No 468
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=45.88 E-value=1.1e+02 Score=28.70 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=54.8
Q ss_pred cCCCCCCEEEEECC--CCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC--cccc-cccC
Q psy11646 29 FKWTDNESVLDVGC--GPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ--NLES-IFLA 103 (433)
Q Consensus 29 l~~~~~~~VLDIGc--G~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~--~l~~-~~~~ 103 (433)
....++.+||=.|+ +.|..+..+ ++. .+ .++++++.++...+.+++ ++.. .+...+-... .+.. ....
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~-a~~--~g-~~v~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~~ 204 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQW-AKA--LG-ATVIGTVSSEEKAELARA-AGAD--HVINYRDEDFVERVREITGGR 204 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHH-HHH--cC-CEEEEEcCCHHHHHHHHH-CCCC--EEEeCCchhHHHHHHHHcCCC
Confidence 34567889998885 233333222 222 23 588999999988888855 3211 1111110000 0111 0124
Q ss_pred cEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 104 KFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 104 ~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
.+|+|+.... . ..+....+.++++|.++...
T Consensus 205 ~~d~vl~~~~-----~--~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 205 GVDVVYDGVG-----K--DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CeeEEEECCC-----c--HhHHHHHHhhccCcEEEEEe
Confidence 5899986433 1 24566788999999988653
No 469
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=45.68 E-value=56 Score=30.15 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=36.8
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ 95 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~ 95 (433)
.+||=.| |+|.++..++..+...+ .++++++.++...+...... ...++.++.+|+.+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 62 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAG-ANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKE 62 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence 3566666 44555545554444445 68999999887665554433 224677888888653
No 470
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=45.54 E-value=56 Score=32.28 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=47.9
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc-CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~-~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
..+.+||=.|+ +|..+..++..+...+ .+|++++.++.......... ...+++++.+|+.+...-...-..+|.|+-
T Consensus 8 ~~~~~vLVtG~-~GfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 8 SATGTYCVTGA-TGYIGSWLVKLLLQRG-YTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 34778998874 6777655555554454 68998887765443332222 224688889998764211111134788776
Q ss_pred cccc
Q psy11646 111 FYCL 114 (433)
Q Consensus 111 ~~~l 114 (433)
....
T Consensus 86 ~A~~ 89 (353)
T PLN02896 86 VAAS 89 (353)
T ss_pred CCcc
Confidence 5543
No 471
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=45.38 E-value=86 Score=30.62 Aligned_cols=98 Identities=22% Similarity=0.302 Sum_probs=51.5
Q ss_pred CCCCEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCC-cccc-cccCcEeEE
Q psy11646 32 TDNESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQ-NLES-IFLAKFNKI 108 (433)
Q Consensus 32 ~~~~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~-~l~~-~~~~~fD~V 108 (433)
.++.+||-.|+|. |..+.. +++.. +..++++++-+++-...+++. +.. .++...-... .+.. ...+.+|+|
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~-la~~~--G~~~v~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIA-VAKAA--GASLVIASDPNPYRLELAKKM-GAD--VVINPREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCEEEEECCCHHHHHHHH-HHHHc--CCcEEEEECCCHHHHHHHHHh-Ccc--eeeCcccccHHHHHHHcCCCCCCEE
Confidence 5778888877542 233322 23222 212688888888777766653 111 1111110010 0111 112468999
Q ss_pred EEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 109 is~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+.+-. .......+.+.|+++|+++...
T Consensus 236 ld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 236 LEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 86432 1235667788999999987653
No 472
>PRK07454 short chain dehydrogenase; Provisional
Probab=45.21 E-value=77 Score=29.04 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCC
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQ 95 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~ 95 (433)
.+.++|=.|+ +|..+..++..+...+ .+|++++.++...+...+.. ...++.++.+|+.+.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 67 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNP 67 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCH
Confidence 3557888885 5555545554444444 68999999887665544432 224677888888763
No 473
>KOG4174|consensus
Probab=45.16 E-value=2.6e+02 Score=26.71 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHH------HHhhc----CCCCeEEEEecccCCcccc-cc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH------AKNHH----TNPKLEFVVANIADQNLES-IF 101 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~------A~~~~----~~~~i~~~~~Di~~~~l~~-~~ 101 (433)
...+||.+|=|.=.++..++ ..+......++++.+...-.+. |+.+. .....-+...|+....... ..
T Consensus 56 ~~~~ill~gEgdFSfs~sl~-~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~ 134 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLA-PHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLR 134 (282)
T ss_pred ccccEEEecccchhhHHHHH-HHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEeccccc
Confidence 34689999888877774444 3333211345555443332111 11111 0122233444555443321 33
Q ss_pred cCcEeEEEEcccccch--------------h-hHHHHHHHHHHhcc-CCCEEEEEeccCCchhhHHHhhhcCCCccccc
Q psy11646 102 LAKFNKIFSFYCLHWV--------------Q-DQRQAISNIYNLLM-PGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYT 164 (433)
Q Consensus 102 ~~~fD~Vis~~~l~~~--------------~-d~~~~l~~i~~~Lk-pGG~lll~~~~~~p~~~~~~~~~~~~~W~~~~ 164 (433)
.+.||.||.+.+.... . -....++.+..+|+ ..|.+.++.-+..|...+-........|....
T Consensus 135 ~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak~~gl~L~ 213 (282)
T KOG4174|consen 135 LQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAKEFGLTLL 213 (282)
T ss_pred ccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhhhccccch
Confidence 4789999988654322 0 12456888999999 78999998777777655544444334554443
No 474
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=45.10 E-value=73 Score=32.85 Aligned_cols=66 Identities=24% Similarity=0.218 Sum_probs=39.3
Q ss_pred CCCeEEEecCCCCCCCCC--chh---------HHHHHHHHHHHHHHHHHhccCCCeEEE---EEeecCCHHHHHHHHhcc
Q psy11646 200 EKVDLVVFDGAPDVTGLH--DLD---------EHLQGLLLIGALNITTFLLKPGGTFVG---KIFRSRNVVCLETKFQIF 265 (433)
Q Consensus 200 ~~~dlVvsD~ap~~tG~~--~~D---------~~~~~~L~~~al~ia~~~L~~gG~fv~---Kif~g~~~~~~~~~l~~~ 265 (433)
..||.|++|..-.-+|.. .-| -..-..+-...++-+...|+|||.+|. -++.-.+...+...++.+
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 469999998764433431 111 111123345667778889999999984 445445555555666553
No 475
>KOG2811|consensus
Probab=44.80 E-value=54 Score=32.91 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCC-CcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcccc
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKS-VVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLES 99 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~-~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~ 99 (433)
++..++|+|||-|.++ .+++...+.. ...++.+|-...-+..-++.. ....+.=+..||+++.+..
T Consensus 182 ~~~~~vEFGAGrg~Ls-~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dLkL~~ 250 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELS-RWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDLKLNA 250 (420)
T ss_pred CcceEEEecCCchHHH-HHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhcCccc
Confidence 3467999999999999 7777666554 112334776665555444433 1234555667777765543
No 476
>PRK06182 short chain dehydrogenase; Validated
Probab=44.78 E-value=1.1e+02 Score=28.79 Aligned_cols=75 Identities=7% Similarity=0.057 Sum_probs=46.1
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc-cc------ccCcEe
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE-SI------FLAKFN 106 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-~~------~~~~fD 106 (433)
+.+||=.|++.| .+..+...+...+ .+|++++.+++.++.... .++.+..+|+.+...- .. ..+..|
T Consensus 3 ~k~vlItGasgg-iG~~la~~l~~~G-~~V~~~~r~~~~l~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 3 KKVALVTGASSG-IGKATARRLAAQG-YTVYGAARRVDKMEDLAS----LGVHPLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHh----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 457887786544 4434444443344 689999998876654432 3578888998764211 10 124689
Q ss_pred EEEEcccc
Q psy11646 107 KIFSFYCL 114 (433)
Q Consensus 107 ~Vis~~~l 114 (433)
+++.+...
T Consensus 77 ~li~~ag~ 84 (273)
T PRK06182 77 VLVNNAGY 84 (273)
T ss_pred EEEECCCc
Confidence 99987654
No 477
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=44.77 E-value=57 Score=31.32 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=47.9
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEEEccccc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH 115 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis~~~l~ 115 (433)
+|.=||+|. .+..+...+...+ .+|+++|.++..++.+.+.- .+.....+. . .....|+|+..-...
T Consensus 2 ~I~IIG~G~--mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~g---~~~~~~~~~-----~--~~~~aDlVilavp~~ 68 (279)
T PRK07417 2 KIGIVGLGL--IGGSLGLDLRSLG-HTVYGVSRRESTCERAIERG---LVDEASTDL-----S--LLKDCDLVILALPIG 68 (279)
T ss_pred eEEEEeecH--HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCC---CcccccCCH-----h--HhcCCCEEEEcCCHH
Confidence 466677764 2211221111233 68999999999888887642 111111111 1 114579998876644
Q ss_pred chhhHHHHHHHHHHhccCCCEE
Q psy11646 116 WVQDQRQAISNIYNLLMPGGEV 137 (433)
Q Consensus 116 ~~~d~~~~l~~i~~~LkpGG~l 137 (433)
. ...+++++...++++..+
T Consensus 69 ~---~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 69 L---LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred H---HHHHHHHHHHhCCCCcEE
Confidence 3 345677888888776433
No 478
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.73 E-value=1.4e+02 Score=28.32 Aligned_cols=98 Identities=10% Similarity=0.068 Sum_probs=53.7
Q ss_pred CCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----c-cccCc
Q psy11646 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----S-IFLAK 104 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~-~~~~~ 104 (433)
...++.+||=.|+. |.....++.... ..+.+++.++.++...+.+++. +. ..+. +....... . .....
T Consensus 141 ~~~~~~~vli~g~~-~~~g~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~-g~--~~~~--~~~~~~~~~~~~~~~~~~~ 213 (328)
T cd08268 141 GLRPGDSVLITAAS-SSVGLAAIQIAN-AAGATVIATTRTSEKRDALLAL-GA--AHVI--VTDEEDLVAEVLRITGGKG 213 (328)
T ss_pred CCCCCCEEEEecCc-cHHHHHHHHHHH-HcCCEEEEEcCCHHHHHHHHHc-CC--CEEE--ecCCccHHHHHHHHhCCCC
Confidence 34567889988863 333322222111 2236899999998887777542 11 1122 11111111 1 01135
Q ss_pred EeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 105 FNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 105 fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|+++.+..- .......+.++++|.++...
T Consensus 214 ~d~vi~~~~~-------~~~~~~~~~l~~~g~~v~~g 243 (328)
T cd08268 214 VDVVFDPVGG-------PQFAKLADALAPGGTLVVYG 243 (328)
T ss_pred ceEEEECCch-------HhHHHHHHhhccCCEEEEEE
Confidence 8988865431 24566778999999988653
No 479
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=44.70 E-value=29 Score=37.04 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=54.1
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc-ccccCcEeEEEEccc
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE-SIFLAKFNKIFSFYC 113 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~-~~~~~~fD~Vis~~~ 113 (433)
.+|+=+||| ..+..+.+.+...+ ..++.+|.+++.++.+++. +.....+|..+...- +..-++.|.++..-.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~~----g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAG-IPLVVIETSRTRVDELRER----GIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC----CCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 456666655 45533433332233 6899999999999999863 678899998864321 112256786665322
Q ss_pred ccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 114 LHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 114 l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
=. .+-...... .+...|...++..
T Consensus 491 ~~--~~~~~iv~~-~~~~~~~~~iiar 514 (558)
T PRK10669 491 NG--YEAGEIVAS-AREKRPDIEIIAR 514 (558)
T ss_pred Ch--HHHHHHHHH-HHHHCCCCeEEEE
Confidence 11 011112223 3445676666543
No 480
>PRK06181 short chain dehydrogenase; Provisional
Probab=44.64 E-value=1e+02 Score=28.61 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=44.9
Q ss_pred CEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc-ccc------ccCcE
Q psy11646 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL-ESI------FLAKF 105 (433)
Q Consensus 35 ~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l-~~~------~~~~f 105 (433)
.+||=.|+. |..+..++..+...+ .+|++++.++...+.+.+.. ...++.+..+|+.+..- ... ..+..
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 467766654 444434444443344 68999999877665544333 23467788888876321 000 01357
Q ss_pred eEEEEcccc
Q psy11646 106 NKIFSFYCL 114 (433)
Q Consensus 106 D~Vis~~~l 114 (433)
|.|+.+...
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 888876543
No 481
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=44.29 E-value=1.2e+02 Score=30.09 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=56.1
Q ss_pred hcCCCCCCEEEEECCCCChhHHHH--hcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC--Cc----ccc
Q psy11646 28 QFKWTDNESVLDVGCGPGNVTSKL--LLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD--QN----LES 99 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG~G~~~~~~--l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~--~~----l~~ 99 (433)
....+++.+||=.|+ |..+..+ +++. .+..++++++.+++..+.+++. +. ..++ +... .. +..
T Consensus 182 ~~~~~~g~~VlV~G~--g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~~-Ga--~~~i--~~~~~~~~~~~~v~~ 252 (369)
T cd08301 182 VAKVKKGSTVAIFGL--GAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKKF-GV--TEFV--NPKDHDKPVQEVIAE 252 (369)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHc-CC--ceEE--cccccchhHHHHHHH
Confidence 344568999999986 4444222 2222 2323799999999999988763 21 1111 1111 00 111
Q ss_pred cccCcEeEEEEcccccchhhHHHHHHHHHHhccCC-CEEEEEe
Q psy11646 100 IFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG-GEVLLLL 141 (433)
Q Consensus 100 ~~~~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpG-G~lll~~ 141 (433)
...+.+|+++-.-. ....+....+.+++| |++++..
T Consensus 253 ~~~~~~d~vid~~G------~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 253 MTGGGVDYSFECTG------NIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred HhCCCCCEEEECCC------ChHHHHHHHHHhhcCCCEEEEEC
Confidence 11235788875432 133566677888996 9887754
No 482
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=44.28 E-value=1.7e+02 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=24.7
Q ss_pred CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEE
Q psy11646 199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVG 247 (433)
Q Consensus 199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~ 247 (433)
...+|+|..|+.. +.|. ..+..+...|++||.+++
T Consensus 142 ~~~fD~VfiDa~k--------~~y~------~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFVDADK--------PNYV------HFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCEEEECCCH--------HHHH------HHHHHHHHhcCCCeEEEE
Confidence 4689999999764 2222 234566789999998875
No 483
>PRK12829 short chain dehydrogenase; Provisional
Probab=44.00 E-value=75 Score=29.48 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccC
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~ 94 (433)
.++.++|=.|++ |..+..++..+...+ .+|++++.++...+...+.....++.+..+|+.+
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAG-ARVHVCDVSEAALAATAARLPGAKVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC
Confidence 467899988876 444435544444444 6899999988776655444322256777888765
No 484
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=43.69 E-value=2.8e+02 Score=26.96 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHhcCCC-CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccccccc
Q psy11646 24 QYIDQFKWT-DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL 102 (433)
Q Consensus 24 ~l~~~l~~~-~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~ 102 (433)
..++..... .+.+|+=+|+|. .+..++..+...+ .+|+.+|.++...+.++.. +.++. +..+ +.+ .-
T Consensus 141 ~a~~~~~~~l~g~kvlViG~G~--iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~----G~~~~--~~~~--l~~-~l 208 (296)
T PRK08306 141 MAIEHTPITIHGSNVLVLGFGR--TGMTLARTLKALG-ANVTVGARKSAHLARITEM----GLSPF--HLSE--LAE-EV 208 (296)
T ss_pred HHHHhCCCCCCCCEEEEECCcH--HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc----CCeee--cHHH--HHH-Hh
Confidence 334443333 588999999875 3322322222233 5999999998877666543 22222 1111 111 11
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
..+|+|+..-... ..-++..+.++||+.++-.
T Consensus 209 ~~aDiVI~t~p~~------~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 209 GKIDIIFNTIPAL------VLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred CCCCEEEECCChh------hhhHHHHHcCCCCcEEEEE
Confidence 4689999853321 1234566778998876644
No 485
>PLN02427 UDP-apiose/xylose synthase
Probab=43.64 E-value=45 Score=33.48 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=47.0
Q ss_pred CCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc---CCCCeEEEEecccCCcccccccCcEeEEEE
Q psy11646 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH---TNPKLEFVVANIADQNLESIFLAKFNKIFS 110 (433)
Q Consensus 34 ~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~---~~~~i~~~~~Di~~~~l~~~~~~~fD~Vis 110 (433)
.++||=.| |+|..+..++..+...++.+|+++|.++..+....... ...+++++.+|+.+...-...-..+|.|+-
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH 92 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN 92 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence 56788555 67777766666555553368999997765443322211 124689999999764211111134788876
Q ss_pred ccc
Q psy11646 111 FYC 113 (433)
Q Consensus 111 ~~~ 113 (433)
...
T Consensus 93 lAa 95 (386)
T PLN02427 93 LAA 95 (386)
T ss_pred ccc
Confidence 554
No 486
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=43.62 E-value=98 Score=31.08 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=50.5
Q ss_pred CCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHH-HHHHHhhcCCCCeEEEEecccC-CcccccccCcEeEEE
Q psy11646 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNM-IKHAKNHHTNPKLEFVVANIAD-QNLESIFLAKFNKIF 109 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~-l~~A~~~~~~~~i~~~~~Di~~-~~l~~~~~~~fD~Vi 109 (433)
+++.+||=.|+|.=......+++.. + .++++++.+++. .+.+++ ++ ..... +..+ ....... +.+|+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~--G-a~Vi~~~~~~~~~~~~a~~-lG---a~~~i-~~~~~~~v~~~~-~~~D~vi 247 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF--G-LRVTVISRSSEKEREAIDR-LG---ADSFL-VTTDSQKMKEAV-GTMDFII 247 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc--C-CeEEEEeCChHHhHHHHHh-CC---CcEEE-cCcCHHHHHHhh-CCCcEEE
Confidence 4688998888753222212233322 2 578889887554 455543 22 22111 1111 0011111 3478887
Q ss_pred EcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
-.-. ...++....+.+++||.++...
T Consensus 248 d~~G------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 248 DTVS------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ECCC------cHHHHHHHHHhhcCCCEEEEEc
Confidence 6432 1235677788999999988753
No 487
>PLN02823 spermine synthase
Probab=43.36 E-value=63 Score=32.20 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHH-HHHHhccCCCeEEEEE-----ee-cCCHHHHHHHHhcccceeEE
Q psy11646 199 DEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALN-ITTFLLKPGGTFVGKI-----FR-SRNVVCLETKFQIFFENVSI 271 (433)
Q Consensus 199 ~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~-ia~~~L~~gG~fv~Ki-----f~-g~~~~~~~~~l~~~F~~v~~ 271 (433)
...+|+|+.|..-...+.... + ......+. .+...|++||.|++-. |. ......+++.++..|..|..
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~-~----Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~ 248 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCY-Q----LYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVP 248 (336)
T ss_pred CCCccEEEecCCCccccCcch-h----hccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEE
Confidence 457999999964222211110 0 11112334 6678999999998753 22 12256788899999999988
Q ss_pred ec-CCCCcccccceeEEEee
Q psy11646 272 AK-PKSSRNSSIESFIVCQN 290 (433)
Q Consensus 272 ~K-P~~sr~~s~E~~~v~~~ 290 (433)
++ ..+|-.+ .=.|++|..
T Consensus 249 y~~~vPsf~~-~w~f~~aS~ 267 (336)
T PLN02823 249 YTAHVPSFAD-TWGWVMASD 267 (336)
T ss_pred EEeecCCCCC-ceEEEEEeC
Confidence 87 3344332 235666643
No 488
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.13 E-value=2.1e+02 Score=27.79 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=52.4
Q ss_pred hcCCCCCCEEEEECCC--CChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcc---ccccc
Q psy11646 28 QFKWTDNESVLDVGCG--PGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL---ESIFL 102 (433)
Q Consensus 28 ~l~~~~~~~VLDIGcG--~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l---~~~~~ 102 (433)
.....++.+||=.|++ .|..+.. +++. .+ .++++++.+. ..+.+++ ++ +.+.. +...... .....
T Consensus 172 ~~~~~~g~~vlI~g~~g~ig~~~~~-~a~~--~g-~~vi~~~~~~-~~~~~~~-~g---~~~~~-~~~~~~~~~~~~~~~ 241 (350)
T cd08274 172 RAGVGAGETVLVTGASGGVGSALVQ-LAKR--RG-AIVIAVAGAA-KEEAVRA-LG---ADTVI-LRDAPLLADAKALGG 241 (350)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHH-HHHh--cC-CEEEEEeCch-hhHHHHh-cC---CeEEE-eCCCccHHHHHhhCC
Confidence 3445688999999872 2333322 2222 22 5788887554 6666654 22 22221 1111100 00112
Q ss_pred CcEeEEEEcccccchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 103 AKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 103 ~~fD~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
..+|+|+.... ...+....+.|+++|.++..
T Consensus 242 ~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 242 EPVDVVADVVG-------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCcEEEecCC-------HHHHHHHHHHhccCCEEEEe
Confidence 45899986543 12467778999999998764
No 489
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=43.07 E-value=1.7e+02 Score=30.01 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=55.4
Q ss_pred EEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCc-ccccccCcEeEEEEcccc
Q psy11646 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN-LESIFLAKFNKIFSFYCL 114 (433)
Q Consensus 36 ~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~-l~~~~~~~fD~Vis~~~l 114 (433)
+|+=+|+ |..+..+...+...+ ..++++|.+++.++.+++. .++.+..+|..+.. +.......+|.|++...-
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g-~~v~vid~~~~~~~~~~~~---~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGEN-NDVTVIDTDEERLRRLQDR---LDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhh---cCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 5666766 677745544433333 6899999999988887753 25778888876532 111112568888775432
Q ss_pred cchhhHHHHHHHHHHhccCCCEEEEE
Q psy11646 115 HWVQDQRQAISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 115 ~~~~d~~~~l~~i~~~LkpGG~lll~ 140 (433)
. +....+....+.+.|.-.++..
T Consensus 76 ~---~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 76 D---ETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred h---HHHHHHHHHHHHhcCCCeEEEE
Confidence 1 1222333444555454444443
No 490
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=42.91 E-value=91 Score=31.14 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=58.8
Q ss_pred cCCCCCeEEEecCCCCCCC-CCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCCHHHHHHHHhcccceeEEecCC
Q psy11646 197 FDDEKVDLVVFDGAPDVTG-LHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPK 275 (433)
Q Consensus 197 ~~~~~~dlVvsD~ap~~tG-~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Kif~g~~~~~~~~~l~~~F~~v~~~KP~ 275 (433)
+....+|-+++|..-..+. ..... ..+|...+++.+..+|++||.++.-.. ...........|+-+..+.-.
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~---l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEG---LDELYEEALESASEVLKPGGRIVFAAP----RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred CCCCccceEEecCCCCccccccccc---HHHHHHHHHHHHHHHhhcCcEEEEecC----CcchhhHhhcCceEEEEEEEe
Confidence 5555689999998654432 22221 568889999999999999998876555 344445556677777777766
Q ss_pred CCcccccceeEE
Q psy11646 276 SSRNSSIESFIV 287 (433)
Q Consensus 276 ~sr~~s~E~~~v 287 (433)
.-++=++.+|++
T Consensus 333 ~H~sLtR~i~v~ 344 (347)
T COG1041 333 VHGSLTRVIYVV 344 (347)
T ss_pred ecCceEEEEEEE
Confidence 666667777754
No 491
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=42.80 E-value=1.5e+02 Score=26.39 Aligned_cols=50 Identities=30% Similarity=0.368 Sum_probs=31.6
Q ss_pred CceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEEEE
Q psy11646 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKI 249 (433)
Q Consensus 176 gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~Ki 249 (433)
++..+++|..+. .....+|+|++++ .+..+ ..+..+.++|++||.+++-.
T Consensus 93 ~i~~i~~d~~~~---------~~~~~fD~I~s~~------~~~~~---------~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 93 NVEIVNGRAEDF---------QHEEQFDVITSRA------LASLN---------VLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred CeEEEecchhhc---------cccCCccEEEehh------hhCHH---------HHHHHHHHhcCCCCEEEEEc
Confidence 456667765431 1245799999875 22222 23455678899999999753
No 492
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=42.73 E-value=67 Score=24.62 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCC
Q psy11646 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVS 69 (433)
Q Consensus 17 ~~~~ll~~l~~~l~~~~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS 69 (433)
..++.++.....-....+.+||=|||.+|.-+..-++..+..+ ...+|+-..
T Consensus 22 ~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~g-A~TiGV~fE 73 (78)
T PF12242_consen 22 NVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAG-ADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC---EEEEEE--
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCC-CCEEEEeec
Confidence 3444444444433334457999999999975433333333333 577777543
No 493
>PRK07109 short chain dehydrogenase; Provisional
Probab=42.64 E-value=1.6e+02 Score=28.93 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=48.7
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhc--CCCCeEEEEecccCCcc-ccc------ccC
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNL-ESI------FLA 103 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~--~~~~i~~~~~Di~~~~l-~~~------~~~ 103 (433)
.+.+||=.|++.|- +..++..+...+ .+|+.++.++..++...+.. ...++.++.+|+.+..- ... ..+
T Consensus 7 ~~k~vlITGas~gI-G~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGV-GRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHH-HHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 35678888865543 324444333344 68999999987776655443 23467788899876421 110 125
Q ss_pred cEeEEEEcccc
Q psy11646 104 KFNKIFSFYCL 114 (433)
Q Consensus 104 ~fD~Vis~~~l 114 (433)
..|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68998876543
No 494
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=42.47 E-value=90 Score=30.23 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=50.6
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCH---HHHHHHHhhc--CCCCeEEEEecccCCcccccccCcEeE
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP---NMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNK 107 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~---~~l~~A~~~~--~~~~i~~~~~Di~~~~l~~~~~~~fD~ 107 (433)
.+.++|=+|+| |.-. .++..+...+..+++.++.++ +..+...+.+ ....+.+...|+.+...-...-..+|+
T Consensus 125 ~~k~vlI~GAG-Gagr-Aia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 125 KGKKLTVIGAG-GAAT-AIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CCCEEEEECCc-HHHH-HHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 46789999996 5432 444333334434699999885 2233222222 112334445565432100011135699
Q ss_pred EEEcccccchhhHHH-HHHHHHHhccCCCEEEEE
Q psy11646 108 IFSFYCLHWVQDQRQ-AISNIYNLLMPGGEVLLL 140 (433)
Q Consensus 108 Vis~~~l~~~~d~~~-~l~~i~~~LkpGG~lll~ 140 (433)
|+.+-.+...++... .+.. ...|+++..++-.
T Consensus 203 lINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~ 235 (289)
T PRK12548 203 LVNATLVGMKPNDGETNIKD-TSVFRKDLVVADT 235 (289)
T ss_pred EEEeCCCCCCCCCCCCCCCc-HHhcCCCCEEEEe
Confidence 998776653321110 0100 2456776654433
No 495
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=42.34 E-value=56 Score=31.70 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=49.9
Q ss_pred CCCEEEEECCCCChhHHHH--hcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCccc----cc-ccCcE
Q psy11646 33 DNESVLDVGCGPGNVTSKL--LLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLE----SI-FLAKF 105 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~--l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~----~~-~~~~f 105 (433)
++.++|=+..|+|..+... +++. .+ .++++++.++...+.+++. +.. .++ +.....+. .. ....+
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~--~G-~~vi~~~~~~~~~~~~~~~-g~~--~~i--~~~~~~~~~~v~~~~~~~~~ 213 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKA--DG-IKVINIVRRKEQVDLLKKI-GAE--YVL--NSSDPDFLEDLKELIAKLNA 213 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHH--cC-CEEEEEeCCHHHHHHHHHc-CCc--EEE--ECCCccHHHHHHHHhCCCCC
Confidence 4555665533444444222 2222 22 5899999999988888763 211 122 11111111 11 11358
Q ss_pred eEEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 106 NKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 106 D~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
|+|+-.-. ........+.++++|+++...
T Consensus 214 d~vid~~g-------~~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 214 TIFFDAVG-------GGLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred cEEEECCC-------cHHHHHHHHhhCCCCEEEEEE
Confidence 98886433 112345577889999988754
No 496
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=42.33 E-value=1.2e+02 Score=29.45 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCCCCCEEEEECCCCChhHHHH--hcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccc-cccCcEe
Q psy11646 30 KWTDNESVLDVGCGPGNVTSKL--LLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLES-IFLAKFN 106 (433)
Q Consensus 30 ~~~~~~~VLDIGcG~G~~~~~~--l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~-~~~~~fD 106 (433)
...++.+||=.|+ |.....+ +++..+ ..++++++.++.....+++.-...-+.....+.... +.. .....+|
T Consensus 163 ~~~~g~~vlI~g~--g~~g~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~-i~~~~~~~~~d 237 (345)
T cd08286 163 KVKPGDTVAIVGA--GPVGLAALLTAQLYS--PSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQ-VLELTDGRGVD 237 (345)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHH-HHHHhCCCCCC
Confidence 3457888877765 5544222 222222 147888999888877776532100011111111000 111 1124589
Q ss_pred EEEEcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 107 KIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 107 ~Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
+|+..-. . ...+..+.+.|+++|+++...
T Consensus 238 ~vld~~g-----~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 238 VVIEAVG-----I-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred EEEECCC-----C-HHHHHHHHHhccCCcEEEEec
Confidence 8886431 1 235677789999999988653
No 497
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=42.31 E-value=1.3e+02 Score=29.77 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=52.1
Q ss_pred CCCCEEEEECCCCChhHH--HHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEEecccCCcccccccCcEeEEE
Q psy11646 32 TDNESVLDVGCGPGNVTS--KLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIF 109 (433)
Q Consensus 32 ~~~~~VLDIGcG~G~~~~--~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~~Di~~~~l~~~~~~~fD~Vi 109 (433)
+++.+||=.|+| ..+. ..+++. .+ .++++++.+++....+.+.++.. .++ .+-....+.. ....+|+|+
T Consensus 179 ~~g~~vlV~G~G--~vG~~av~~Ak~--~G-~~vi~~~~~~~~~~~~~~~~Ga~--~~i-~~~~~~~~~~-~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLG--GVGHMGVKIAKA--MG-HHVTVISSSDKKREEALEHLGAD--DYL-VSSDAAEMQE-AADSLDYII 249 (357)
T ss_pred CCCCeEEEEccc--HHHHHHHHHHHH--CC-CeEEEEeCCHHHHHHHHHhcCCc--EEe-cCCChHHHHH-hcCCCcEEE
Confidence 478899888654 3432 222322 22 47888888887776665554321 111 1111111111 113478887
Q ss_pred EcccccchhhHHHHHHHHHHhccCCCEEEEEe
Q psy11646 110 SFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141 (433)
Q Consensus 110 s~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~ 141 (433)
-.-. ....+....+.+++||+++...
T Consensus 250 d~~g------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 250 DTVP------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ECCC------chHHHHHHHHHhccCCEEEEEC
Confidence 6432 1235667788999999988754
No 498
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=42.31 E-value=2.2e+02 Score=27.00 Aligned_cols=83 Identities=24% Similarity=0.373 Sum_probs=51.8
Q ss_pred CceEEEccccccchHHHHHHhcCCCCCeEEEecCCCCC-CCCCchhHHHHHHHHHHHHHHHHHhccCCCeEEE------E
Q psy11646 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDV-TGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVG------K 248 (433)
Q Consensus 176 gv~~iqgDi~~~~t~~~il~~~~~~~~dlVvsD~ap~~-tG~~~~D~~~~~~L~~~al~ia~~~L~~gG~fv~------K 248 (433)
.+..+.|| ..++.+.|+.+.||.++.|-.-.. +| +..+.++- .=-.++|++||.+.- |
T Consensus 186 ~i~iilGD------~~e~V~~~~D~sfDaIiHDPPRfS~Ag-----eLYseefY----~El~RiLkrgGrlFHYvG~Pg~ 250 (287)
T COG2521 186 AIKIILGD------AYEVVKDFDDESFDAIIHDPPRFSLAG-----ELYSEEFY----RELYRILKRGGRLFHYVGNPGK 250 (287)
T ss_pred ccEEeccc------HHHHHhcCCccccceEeeCCCccchhh-----hHhHHHHH----HHHHHHcCcCCcEEEEeCCCCc
Confidence 34556665 567889999999999999864322 22 11111111 112368999998753 6
Q ss_pred EeecCCHH-HHHHHHh-cccceeEEec
Q psy11646 249 IFRSRNVV-CLETKFQ-IFFENVSIAK 273 (433)
Q Consensus 249 if~g~~~~-~~~~~l~-~~F~~v~~~K 273 (433)
-++|.+.. .....|+ .-|..|...+
T Consensus 251 ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 251 RYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred ccccCChhHHHHHHHHhcCceeeeeeh
Confidence 78888854 5555664 4588776653
No 499
>KOG1209|consensus
Probab=42.12 E-value=1.3e+02 Score=28.09 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCCEEEEECCCCChhHHHHhcccCCCCCcEEEEEeCCHH-HHHHHHhhcCCCCeEEEEecccC
Q psy11646 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN-MIKHAKNHHTNPKLEFVVANIAD 94 (433)
Q Consensus 33 ~~~~VLDIGcG~G~~~~~~l~~~~~~~~~~v~gvDiS~~-~l~~A~~~~~~~~i~~~~~Di~~ 94 (433)
....||=.||..|..+. .++..+.+.+.+|+++--+-+ |.+.+.+ .++....+|+.+
T Consensus 6 ~~k~VlItgcs~GGIG~-ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~gl~~~kLDV~~ 63 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGY-ALAKEFARNGYLVYATARRLEPMAQLAIQ----FGLKPYKLDVSK 63 (289)
T ss_pred CCCeEEEeecCCcchhH-HHHHHHHhCCeEEEEEccccchHhhHHHh----hCCeeEEeccCC
Confidence 35689999999999994 444444444468888865543 4333332 356777778765
No 500
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=41.95 E-value=2.2e+02 Score=27.74 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred CEEEEECCCC-ChhHHHHhcccCCCCCcEEEEEeCCHHHHHHHHhhcCCCCeEEEE------ecccCCcccccccCcEeE
Q psy11646 35 ESVLDVGCGP-GNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVV------ANIADQNLESIFLAKFNK 107 (433)
Q Consensus 35 ~~VLDIGcG~-G~~~~~~l~~~~~~~~~~v~gvDiS~~~l~~A~~~~~~~~i~~~~------~Di~~~~l~~~~~~~fD~ 107 (433)
.+|+=+|+|. |.+....|.+ .+..|+.++-+++.++..++.- ++.+.. ...... .+ ...+.||+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~----~G~~V~lv~r~~~~~~~i~~~~---Gl~i~~~g~~~~~~~~~~-~~-~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR----AGLPVRLILRDRQRLAAYQQAG---GLTLVEQGQASLYAIPAE-TA-DAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh----CCCCeEEEEechHHHHHHhhcC---CeEEeeCCcceeeccCCC-Cc-ccccccCE
Confidence 4688899875 4433234442 2358999999876666555421 121110 011000 01 11257898
Q ss_pred EEEcccccchhhHHHHHHHHHHhccCCCEEEEEeccCCc
Q psy11646 108 IFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146 (433)
Q Consensus 108 Vis~~~l~~~~d~~~~l~~i~~~LkpGG~lll~~~~~~p 146 (433)
|+..-=-+ +...+++.+...+.++..++..-++...
T Consensus 74 viv~vK~~---~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 74 LLLACKAY---DAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred EEEECCHH---hHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 87754323 3467888999999999987777666544
Done!