RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11646
(433 letters)
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 117 bits (296), Expect = 3e-31
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 174 FTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALN 233
GV ++GDIT T++++ KVDLV+ DGAP+V+G+ + D + L++ AL
Sbjct: 60 IQGVYFLRGDITDPETLEKLRELLP-GKVDLVLSDGAPNVSGIENTDSFISLQLVLAALL 118
Query: 234 ITTFLLKPGGTFVGKIFRSRNV-VCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNY 291
+ +L+PGG FV K+F+ V L K + FE V I KP +SR SS E ++VC +
Sbjct: 119 LALEVLRPGGNFVVKVFKGFEFSVELLEKLKKGFEKVGIFKPPASRPSSSEEYLVCLGF 177
Score = 29.1 bits (66), Expect = 3.0
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 18 AAKLLSQYIDQFKWTDNES--VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN 71
A KLL + ++F + VLD+G PG + ++LL V V +D+ P
Sbjct: 6 AYKLL-EIDERFGLKPGKGKTVLDLGAAPGGFS-QVLLERGGAGKV--VAVDLGPM 57
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 113 bits (286), Expect = 1e-29
Identities = 42/123 (34%), Positives = 65/123 (52%)
Query: 173 LFTGVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGAL 232
GVI +QGDIT E T++++ VD+V+ D AP+ +G +D L AL
Sbjct: 83 PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELAL 142
Query: 233 NITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+LKPGG+FV K+F+ + L + F V I KPK+SR S E ++V + ++
Sbjct: 143 EFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFK 202
Query: 293 PPK 295
+
Sbjct: 203 GKE 205
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 82.3 bits (204), Expect = 2e-19
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 38 LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNL 97
LDVGCG G + + L V G+D+SP M+ A+ +FVV + D
Sbjct: 1 LDVGCGTGLLA-EALARRGGARVT---GVDLSPEMLALARKR---APRKFVVGDAEDLPF 53
Query: 98 ESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
F+ + S LH + D +A+ I +L PGG++++
Sbjct: 54 PD---ESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 80.4 bits (199), Expect = 3e-17
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
A Y+ + +Q+ A +LL + + SVLD+GCG G +T LL +
Sbjct: 6 AKTYDRHAKIQREMAKRLL-ALLKEKGIFIPASVLDIGCGTGYLTRALLKRF---PQAEF 61
Query: 64 VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
+ D+S M+ AK + ++F+ + L + F+ I S L W D QA
Sbjct: 62 IANDISAGMLAQAK-TKLSENVQFICGDAEKLPL---EDSSFDLIVSNLALQWCDDLSQA 117
Query: 124 ISNIYNLLMPGGEVLL 139
+S + +L PGG +
Sbjct: 118 LSELARVLKPGGLLAF 133
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 75.6 bits (186), Expect = 5e-16
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLI-GALNI 234
V ++GD T E + +I D+KVD+V+ D AP+++G D+D HL+ + L+ AL+I
Sbjct: 73 NVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDID-HLRSIDLVELALDI 131
Query: 235 TTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNY 291
+LKP G FV K+F+ + + + FE V + KP++SR S E +IV + +
Sbjct: 132 AKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 72.4 bits (178), Expect = 7e-16
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 38 LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIADQN 96
LD+GCG G + LL ++ G+D+SP ++ A L+ V + +
Sbjct: 1 LDIGCGTGTLLRALLEALPG---LEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLD 57
Query: 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG 135
+ F+ + + LH + D R + N+ LL PGG
Sbjct: 58 AIDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGG 96
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 70.2 bits (172), Expect = 2e-14
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFV 88
VLD+GCG G +T L P + ++VG+D+S I+ AK + +EF+
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGA--EVVGIDISEEAIEKAKENAKKLGYENVEFI 59
Query: 89 VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
+I + + F+ + S L+ + D + + I +L PGG +++
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVS 111
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 67.3 bits (165), Expect = 5e-14
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVV 89
VLD+GCG G++ + L P + ++ G+D+SP M++ A+ + P++ FV
Sbjct: 1 PGARVLDIGCGTGSL-AIELARLFPGA--RVTGVDLSPEMLELARENAKLALGPRITFVQ 57
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAF 144
+ D L F+ +F + + + + +LL PGG L+LNA
Sbjct: 58 GDAPD---ALDLLEGFDAVFIGGGGGDLLE---LLDALASLLKPGG--RLVLNAV 104
Score = 28.8 bits (65), Expect = 1.9
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 22/67 (32%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
VQGD E D V G G DL E L L LL
Sbjct: 56 VQGDAPDALD--------LLEGFDAVFIGG-----GGGDLLELLDALAS---------LL 93
Query: 240 KPGGTFV 246
KPGG V
Sbjct: 94 KPGGRLV 100
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 66.3 bits (162), Expect = 1e-13
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVVANIA 93
VLD+GCG G + L V G+D+SP ++ A+ +E + +
Sbjct: 2 VLDLGCGTGALAL-ALASGPGARVT---GVDISPVALELARKAAAALLADNVEVLKGDAE 57
Query: 94 DQNLESIFLAKFNKIFS-FYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+ E+ F+ I S H V+D + + LL PGG ++L
Sbjct: 58 ELPPEAD--ESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102
Score = 30.9 bits (70), Expect = 0.41
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 17/72 (23%)
Query: 180 VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLL 239
++GD + DE D+++ D LH L E L L LL
Sbjct: 52 LKGDAEE-------LPPEADESFDVIISDPP-----LHHLVEDLARFLEEAR-----RLL 94
Query: 240 KPGGTFVGKIFR 251
KPGG V +
Sbjct: 95 KPGGVLVLTLVL 106
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 64.4 bits (157), Expect = 5e-12
Identities = 38/117 (32%), Positives = 59/117 (50%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV +QGD E +K + D KV +V+ D AP+++G +D L+ AL++
Sbjct: 92 GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMC 151
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
+L PGG+FV K+F+ + + F V + KP SSR S E +IV +
Sbjct: 152 RDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 63.6 bits (155), Expect = 2e-11
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
V+D+GCGPGN T +LL P +V + G+D SP M+ A P F A++
Sbjct: 34 VVDLGCGPGNST-ELLARRWPDAV--ITGIDSSPAMLAKAAQR--LPDATFEEADLRTWK 88
Query: 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGG 135
E + +F+ L W+ D + + + + L PGG
Sbjct: 89 PE----QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGG 123
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 63.1 bits (154), Expect = 2e-11
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSV--VKLVGLDVSPNMIKHAKNHH---TNPKLEFV 88
+ VLDV CG G++ L KSV ++VGLD+S +M++ A+ +EFV
Sbjct: 52 GDKVLDVACGTGDMALLLA-----KSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106
Query: 89 VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
V + + F+ + + L V D +A+ +Y +L PGG +L+L
Sbjct: 107 VGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 62.3 bits (152), Expect = 4e-11
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--PKLEFVVANI 92
+ VLDVGCGPGN L ++VG+D S M+ AK P +EFV +
Sbjct: 21 DRVLDVGCGPGNDA--RELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA 78
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
F+ + S L ++D +A++ I +L PGG V++L
Sbjct: 79 DGLPFPD---GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 58.5 bits (142), Expect = 6e-11
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT--NPKLEFVVANIAD 94
+LD+GCG G V L + G+D+S ++ AK PK+ FVVA+ D
Sbjct: 1 ILDLGCGTGRVLRAL----ARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARD 56
Query: 95 QNLESIFLAKFNKIFSFYCLH---WVQDQRQAISNIYNLLMPGG 135
L F+ + + R + LL PGG
Sbjct: 57 --LPFE-EGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|234970 PRK01683, PRK01683, trans-aconitate 2-methyltransferase;
Provisional.
Length = 258
Score = 61.1 bits (149), Expect = 1e-10
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 22/125 (17%)
Query: 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
A LL++ + + V+D+GCGPGN T +LL+ P + ++ G+D SP M+ A+
Sbjct: 20 ARDLLARVPLE----NPRYVVDLGCGPGNST-ELLVERWPAA--RITGIDSSPAMLAEAR 72
Query: 78 NHHTNPKLEFVVANIA----DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMP 133
+ P +FV A+IA Q L+ IF N W+ D + + +LL P
Sbjct: 73 SRL--PDCQFVEADIASWQPPQALDLIFA---NASL-----QWLPDHLELFPRLVSLLAP 122
Query: 134 GGEVL 138
GG VL
Sbjct: 123 GG-VL 126
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 61.1 bits (145), Expect = 2e-10
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 7/136 (5%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL---EFVVANIA 93
VLD+GCG G + LL L +VG+D+SP M+ A+ L +FVVA+
Sbjct: 52 VLDIGCGTGRLA---LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADAL 108
Query: 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK 153
L A F+ + S LH + +A+ + +L PGG ++L + + +
Sbjct: 109 GGVLPFEDSASFDLVISLLVLHLL-PPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLA 167
Query: 154 LSRKPKWTEYTQVRTY 169
+
Sbjct: 168 ALLGFGDPVLERGDIL 183
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 57.5 bits (139), Expect = 6e-10
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 17 DAAKLLSQYIDQF--KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
+ L++ + + + VLD+GCG G +LL L + + G+D SP +
Sbjct: 4 QRERFLARLLARLLPRLKPGGRVLDIGCGTG-----ILLRLLRERGFDVTGVDPSPAAVL 58
Query: 75 HAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG 134
D ++ K++ I +F L + D + + LL PG
Sbjct: 59 IFSLF--------------DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPG 104
Query: 135 GEVLL 139
G +L+
Sbjct: 105 GVLLI 109
>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.
Length = 251
Score = 57.8 bits (140), Expect = 2e-09
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
A YE + +Q+ A LL+ + VLD GCGPG ++ S V
Sbjct: 17 AAHYEQHAELQRQSADALLAMLPQR----KFTHVLDAGCGPGWMS---RYWRERGSQV-- 67
Query: 64 VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFL--AKFNKIFSFYCLHWVQDQR 121
LD+SP M+ A+ ++ +I ES+ L A F+ +S + W +
Sbjct: 68 TALDLSPPMLAQARQKDAADH--YLAGDI-----ESLPLATATFDLAWSNLAVQWCGNLS 120
Query: 122 QAISNIYNLLMPGGEV 137
A+ +Y ++ PGG V
Sbjct: 121 TALRELYRVVRPGGVV 136
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 50.7 bits (122), Expect = 3e-07
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP-KLEFVVANI 92
+ VLDV CG G++ +L K+ G+D S M++ AK P +EF+ A+
Sbjct: 40 GQKVLDVACGTGDLAIELAK--SAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA 97
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL------LNAFNP 146
E F+ + + L V D ++A+ +Y +L PGG +++L
Sbjct: 98 EALPFED---NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154
Query: 147 IYDLYEK 153
Y Y K
Sbjct: 155 FYKFYLK 161
>gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase;
Provisional.
Length = 255
Score = 47.0 bits (112), Expect = 6e-06
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
V+D+GCGPGN+T + L P +V++ LD SP M+ A+ ++ ++ D
Sbjct: 33 VVDLGCGPGNLT-RYLARRWPGAVIE--ALDSSPEMVAAARERG----VDARTGDVRDWK 85
Query: 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL--NAFNPIYDLYEKL 154
+ + + S L WV + + + L PG + + + N P + L
Sbjct: 86 PKP----DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRAL 141
Query: 155 SRKPKWTE 162
+R+ W +
Sbjct: 142 ARREPWAK 149
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 45.5 bits (109), Expect = 2e-05
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 40/146 (27%)
Query: 30 KWTD---NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---- 82
KW + VLD+ CG G++ + L ++VGLD S M+ + +
Sbjct: 45 KWLGVRPGDKVLDLACGTGDLA--IALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS 102
Query: 83 PKLEFVVAN-----IADQNLESIFLAKFNKIFSF------YCLHWVQDQRQAISNIYNLL 131
+EFV + D SF + L V D +A+ +Y +L
Sbjct: 103 GNVEFVQGDAEALPFPDN--------------SFDAVTIAFGLRNVPDIDKALREMYRVL 148
Query: 132 MPGGEVLLL------LNAFNPIYDLY 151
PGG +++L YD Y
Sbjct: 149 KPGGRLVILEFSKPTNPPLKKAYDFY 174
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 45.1 bits (107), Expect = 2e-05
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP---KLEFVVANI 92
LDV G G+ T L + S K+VGLD++ NM+K + +EF+ N
Sbjct: 50 KFLDVAGGTGDWTFGLS--DSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNA 107
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL------LNAFNP 146
+ E F+ + + L D + + + +L PGG V+ L +
Sbjct: 108 EELPFED---DSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQ 164
Query: 147 IYDLYEK 153
Y+LY K
Sbjct: 165 AYELYFK 171
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 43.8 bits (104), Expect = 6e-05
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT-NP--KLEFVVANI 92
VLDVGCG G LL L + + G+D S I+ AK H +P K+E+ ++
Sbjct: 48 RVLDVGCGGG-----LLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV 102
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
D L F+ + L V D + I LL PGG +
Sbjct: 103 ED--LAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFF 147
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 43.2 bits (102), Expect = 2e-04
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP 83
+++D+ + VLDVGCG G + V +VG+D+S NMI A
Sbjct: 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYM----AENFDVHVVGIDLSVNMISFALERAIGR 312
Query: 84 K--LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141
K +EF VA+ + F+ I+S + +QD+ + + L PGG+VL
Sbjct: 313 KCSVEFEVADCTKKTYPD---NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVL--- 366
Query: 142 NAFNPIYDLYEKLSRKP--KWTEYTQVRTY 169
I D Y + P ++ EY + R Y
Sbjct: 367 -----ISD-YCRSPGTPSPEFAEYIKQRGY 390
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 40.8 bits (96), Expect = 6e-04
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 36 SVLDVGCGPGNVTSKLLLP--NLPKSVVKLVGLDVSPNMIKHAKNH--HTNPKLEFVVAN 91
VLDVGCG G L P L SV G+D S I+ AK H + +++ A
Sbjct: 62 RVLDVGCGGGI----LSEPLARLGASV---TGIDASEKPIEVAKLHALESGVNIDYRQAT 114
Query: 92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+ D +F+ + L V D + L+ PGG + L
Sbjct: 115 VEDLASAG---GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159
>gnl|CDD|129823 TIGR00740, TIGR00740, tRNA (cmo5U34)-methyltransferase. This tRNA
methyltransferase is involved, together with cmoB, in
preparing the uridine-5-oxyacetic acid (cmo5U) at
position 34 [Unknown function, Enzymes of unknown
specificity].
Length = 239
Score = 40.6 bits (95), Expect = 8e-04
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH----HTNPKLEFVVANI 92
V D+GC G T N+ + VK++G+D S M++ + H H+ +E + +I
Sbjct: 57 VYDLGCSRGAATLSAR-RNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI 115
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQ-DQRQA-ISNIYNLLMPGGEVLL 139
+++ + N + L ++ + R A ++ IY L P G ++L
Sbjct: 116 RHVEIKNASMVILN-----FTLQFLPPEDRIALLTKIYEGLNPNGVLVL 159
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 39.5 bits (93), Expect = 0.001
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 33/134 (24%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK-----NHHTNPKLEF 87
+ VL+VG G G V K+ K+VG+D++P ++ AK N+ N +E
Sbjct: 23 KGDRVLEVGTGSGIVAI-----VAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEV 77
Query: 88 V----VANIADQNLESIFLAKFN----------KIFSFYCLHWV--QDQRQAIS----NI 127
+ + I FN + + +D R+ I +
Sbjct: 78 IRSDLFEPFRGDKFDVIL---FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEV 134
Query: 128 YNLLMPGGEVLLLL 141
L PGG +LLL
Sbjct: 135 GRYLKPGGRILLLQ 148
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 39.2 bits (92), Expect = 0.002
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 25/163 (15%)
Query: 6 LYETNNSMQQLDAAKL--LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
+E + L+ A+ L +++ ++LD+GCG G L + + V +
Sbjct: 45 YFEDPDMT--LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG----LAIYAAEEYGVTV 98
Query: 64 VGLDVSPNMIKHAKNH----HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD 119
VG+ +S + +A+ +E + + D F F++I S V
Sbjct: 99 VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD------FEEPFDRIVSVGMFEHVGK 152
Query: 120 QRQA--ISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKW 160
+ +Y LL PGG +LL++ I ++ R P +
Sbjct: 153 ENYDDFFKKVYALLKPGG--RMLLHS---ITGPDQEFRRFPDF 190
>gnl|CDD|182918 PRK11036, PRK11036, putative S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 255
Score = 38.8 bits (91), Expect = 0.003
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 30/130 (23%)
Query: 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL---VGL-DVSPNM 72
D +LL++ + VLD G G G KL +L V L D+S M
Sbjct: 33 DLDRLLAELPPR-----PLRVLDAGGGEGQTAIKL---------AELGHQVILCDLSAEM 78
Query: 73 IKHAKNHHTN----PKLEFV---VANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAIS 125
I+ AK ++F+ +IA + L F+ + L WV D + +
Sbjct: 79 IQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV-----LEWVADPKSVLQ 133
Query: 126 NIYNLLMPGG 135
++++L PGG
Sbjct: 134 TLWSVLRPGG 143
>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.
Length = 272
Score = 38.7 bits (91), Expect = 0.004
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
A LL++ +D+ ++LD+GCG G T L + ++L GLD+S IK+A
Sbjct: 75 ANLLAERLDE----KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAK 130
Query: 79 HHTNPKLEFVVAN-----IADQNLESI 100
+ P++ F VA+ ADQ+L++I
Sbjct: 131 RY--PQVTFCVASSHRLPFADQSLDAI 155
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 35.9 bits (83), Expect = 0.007
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVVANI 92
VLD G G G P + ++VG+++ P A+ P++ VV +
Sbjct: 4 VLDPGAGSGAFLL-AAARAGPDA--RVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 93 ADQNLESIFLAKFNKIFS--FYCLHWVQDQ------RQAISNIYNLLMPGGEVLLLLNA 143
+ L + F+ + Y + + ++ LL PGG ++++ A
Sbjct: 61 RE--LLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITPA 117
>gnl|CDD|185348 PRK15451, PRK15451, tRNA cmo(5)U34 methyltransferase; Provisional.
Length = 247
Score = 37.7 bits (87), Expect = 0.007
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH---HTNPK-LEFVV 89
V D+GC G T + N+ K++ +D SP MI+ + H + P ++ +
Sbjct: 57 GTQVYDLGCSLGAATLSVR-RNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE 115
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQD-QRQA-ISNIYNLLMPGGEVLL 139
+I D +E+ + N + L +++ +RQA + IY L PGG ++L
Sbjct: 116 GDIRDIAIENASMVVLN-----FTLQFLEPSERQALLDKIYQGLNPGGALVL 162
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 36.4 bits (85), Expect = 0.012
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 19/138 (13%)
Query: 16 LDAA-KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
LD +LL ++ + VLD+GCG G + + L + P +++ +D++ ++
Sbjct: 16 LDIGSRLLLSHLPK---PLGGKVLDLGCGYGVLGAALAKRS-PD--LEVTMVDINARALE 69
Query: 75 HAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIY------ 128
A+ + LE +D ++ KF+ I S H + ++
Sbjct: 70 SARANLAANGLENGEVFWSDL-YSAVEPGKFDLIISNPPFH---AGKATDYDVAQRFIAG 125
Query: 129 --NLLMPGGEVLLLLNAF 144
L PGGE+ ++ N
Sbjct: 126 AARHLKPGGELWIVANRH 143
>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional.
Length = 226
Score = 36.6 bits (85), Expect = 0.015
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
Query: 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVK--LVGLDVSPNMIK 74
+ K + +Y + VLDV G G ++ K V K +V LD + NM+K
Sbjct: 40 ELVKTILKY-----CGRPKKVLDVAAGKGELSYHF------KKVFKYYVVALDYAENMLK 88
Query: 75 HA 76
Sbjct: 89 MN 90
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 36.5 bits (85), Expect = 0.027
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVS 69
L + + + SVLD+GCG G + +LLL K ++ G+DVS
Sbjct: 271 LEAVVAALRESGARSVLDLGCGEGKLL-RLLLAE--KQFERIAGVDVS 315
>gnl|CDD|114142 pfam05401, NodS, Nodulation protein S (NodS). This family consists
of nodulation S (NodS) proteins. The products of the
rhizobial nodulation genes are involved in the
biosynthesis of lipochitin oligosaccharides (LCOs),
which are host-specific signal molecules required for
nodule formation. NodS is an S-adenosyl-L-methionine
(SAM)-dependent methyltransferase involved in N
methylation of LCOs. NodS uses N-deacetylated
chitooligosaccharides, the products of the NodBC
proteins, as its methyl acceptors.
Length = 201
Score = 35.5 bits (82), Expect = 0.032
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN-PKLEFVVANIAD 94
+ L+VGC G T +L P +L +DV P I A+ + ++V+++
Sbjct: 46 NALEVGCAAGAFTERLA----PYCQ-RLTVIDVMPEAIARARLRMKKWSHISWIVSDVQQ 100
Query: 95 QNLESIFLAKFNKIFS---FYCLHWVQDQRQAISNIYNLLMPGG 135
+ F+ I Y L V + R A+ N+ ++L P G
Sbjct: 101 FSTN----ELFDLIVVAEVLYYLGDVAEMRGAVRNLVSMLAPDG 140
>gnl|CDD|238992 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on
the inner membrane of the cell. This ATP-driven oxyanion
pump catalyzes the extrusion of arsenite, antimonite and
arsenate. Maintenance of a low intracellular
concentration of oxyanion produces resistance to the
toxic agents. The pump is composed of two subunits, the
catalytic ArsA subunit and the membrane subunit ArsB,
which are encoded by arsA and arsB genes respectively.
Arsenic efflux in bacteria is catalyzed by either ArsB
alone or by ArsAB complex. The ATP-coupled pump,
however, is more efficient. ArsA is composed of two
homologous halves, A1 and A2, connected by a short
linker sequence.
Length = 217
Score = 35.3 bits (82), Expect = 0.035
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 192 EIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGAL---NITTFLL 239
+F F + D++VFD AP TG H L LL+ L T+F L
Sbjct: 104 AVFREFSEGLYDVIVFDTAP--TG-HTLR-----LLVRELLTDPERTSFRL 146
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 36.0 bits (83), Expect = 0.035
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 11 NSMQQLDAA---KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLD 67
Q+++ KL+ + ++ + E V+D CG G T LP L K +VG++
Sbjct: 267 RDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFT----LP-LAKQAKSVVGIE 321
Query: 68 VSPNMIKHAKNH---HTNPKLEFVVANI 92
V P ++ A+ + + +EF+ +
Sbjct: 322 VVPESVEKAQQNAELNGIANVEFLAGTL 349
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 35.3 bits (82), Expect = 0.036
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 24/143 (16%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
VL+ G G G +T+ L + ++ + K A+ + D+
Sbjct: 98 VLEAGTGSGALTAYLA--RAVGPEGHVTTYEIREDFAKTARE-------NLSEFGLGDRV 148
Query: 97 -------LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYD 149
E I + +F L + D + ++ + L PGG V++ +
Sbjct: 149 TLKLGDVREGIDEEDVDAVF----LD-LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEK 203
Query: 150 LYEKLSRKPKW---TEYTQVRTY 169
E L + T VR +
Sbjct: 204 TVEALRERGFVDIEAVETLVRRW 226
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 34.4 bits (79), Expect = 0.070
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH----HTNPKLEFVVANI 92
VLD GCG G LL L K + +D+S M++ A+N +EF V ++
Sbjct: 59 VLDAGCGTG-----LLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL 113
>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 34.8 bits (80), Expect = 0.077
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA 76
LL++ I + +LD+GCG G L L +L G+D+S NM+ A
Sbjct: 113 LLAEMIGKADLGPFRRMLDLGCGTG-----LTGEALRDMADRLTGVDISENMLAKA 163
>gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS)
enzymes.
Length = 224
Score = 34.3 bits (79), Expect = 0.087
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 35 ESVLDVGCGPGNVTSKL--LLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI 92
+ VLD GCG G S L L P ++L G +SP + + L+ +
Sbjct: 1 KRVLDFGCGYG---SDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIF 55
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+ + F ++ +F F +H ++D+ SNI L GG ++L
Sbjct: 56 YRDSAKDPFPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVL 102
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 34.1 bits (79), Expect = 0.11
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 25/77 (32%)
Query: 35 ESVLDVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK-----NHHTN----- 82
E+VLDVGCG G + + L K+VG+D+ P ++ AK N
Sbjct: 162 ETVLDVGCGSGILAIAALKL------GAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVY 215
Query: 83 -----PKLEF--VVANI 92
P+ + VVANI
Sbjct: 216 LPGDLPEGKADVVVANI 232
>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
Length = 443
Score = 34.4 bits (80), Expect = 0.11
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK-NHHTN--PKLEFVVA 90
+ VLD+ CG GN T LP L + ++VG++ M++ A+ N N + F A
Sbjct: 298 GDRVLDLFCGLGNFT----LP-LARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHA 352
Query: 91 NI-ADQNLESIFLAKFNKI 108
N+ D + L F+K+
Sbjct: 353 NLEEDFTDQPWALGGFDKV 371
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 33.8 bits (78), Expect = 0.13
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 16 LDA-AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
LD ++LL ++ VLD+GCG G + L + P++ + LV DV+ ++
Sbjct: 143 LDKGSRLL---LETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLV--DVNARAVE 196
Query: 75 HAK-NHHTN-PKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-----WVQDQRQAISNI 127
A+ N N + V A+ + +E KF+ I S H ++ I+
Sbjct: 197 SARKNLAANGVENTEVWASNLYEPVE----GKFDLIISNPPFHAGKAVVHSLAQEIIAAA 252
Query: 128 YNLLMPGGEVLLLLNAFNPIYDLYEKL 154
L PGGE+ ++ N P ++L
Sbjct: 253 ARHLKPGGELWIVANRHLPYEKKLKEL 279
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 33.8 bits (78), Expect = 0.15
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80
L+ + D + +LD+G G G + L P + V + +D+SP+ + A+
Sbjct: 99 LVEAALALLLQLD-KRILDLGTGSGAIAIALAK-EGPDAEV--IAVDISPDALALAR--- 151
Query: 81 TNPKLEFVVANIADQNLESIFL 102
N L + +
Sbjct: 152 ---------ENAERNGLVRVLV 164
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 33.2 bits (76), Expect = 0.16
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 32/137 (23%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
S LDV CG + + L P+ V GLD S NM+ + + D
Sbjct: 47 TSALDVCCGTADWSIALAEAVGPEGHVI--GLDFSENMLSVGRQ------------KVKD 92
Query: 95 QNLESIFLAKFNKI--------FSF----YCLHWVQDQRQAISNIYNLLMPGGEVLLL-- 140
L ++ L N + F + + L V D Q + +Y ++ PGG+V+ L
Sbjct: 93 AGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152
Query: 141 ----LNAFNPIYDLYEK 153
+ F +Y Y K
Sbjct: 153 SQPTIPGFKQLYFFYFK 169
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 33.2 bits (77), Expect = 0.18
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--HTNPKLEFVVANIA 93
VLDVGCG G +L ++ + + G+D S I+ A+ H + K+++
Sbjct: 51 RVLDVGCGGG-----ILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAE 105
Query: 94 DQNLESIFLAKFNKIFSFYCL----HWVQDQRQAISNIYNLLMPGGEVLL 139
+ E +F+ + C+ H V D + L+ PGG V
Sbjct: 106 ELAAEHP--GQFDVVT---CMEMLEH-VPDPASFVRACAKLVKPGGLVFF 149
>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
Provisional.
Length = 342
Score = 33.0 bits (76), Expect = 0.27
Identities = 49/159 (30%), Positives = 62/159 (38%), Gaps = 43/159 (27%)
Query: 12 SMQQLDAAK--LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVS 69
S LD LLS K VLDVGCG G V S +L + PK ++L DV
Sbjct: 177 SRDGLDVGSQLLLSTLTPHTK----GKVLDVGCGAG-VLSAVLARHSPK--IRLTLSDV- 228
Query: 70 PNMIKHAKNHHTNPKLEFVVANIADQNLESIFLA---------KFNKIFS---FY----- 112
A LE A +A LE A +F+ I S F+
Sbjct: 229 -----SA------AALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQT 277
Query: 113 CLHWVQDQ-RQAISNIYNLLMPGGEVLLLLNAFNPIYDL 150
L Q R A+ + L GGE+ ++ NAF P DL
Sbjct: 278 SLDAAQTLIRGAVRH----LNSGGELRIVANAFLPYPDL 312
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 33.1 bits (76), Expect = 0.31
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 7 YETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGL 66
++ N ++ A KL ++ + E VLD+ CG G LP L K V K+ G+
Sbjct: 271 FQVNPAV----AEKLYETALEWLELAGGERVLDLYCGVGTFG----LP-LAKRVKKVHGV 321
Query: 67 DVSPNMIKHAK-----NHHTNPKLEFVVANIADQNLESIFLAKFNKIF 109
++SP ++ A+ N N +EF+ + + K + +
Sbjct: 322 EISPEAVEAAQENAAANGIDN--VEFIAGDAEEFTPAWWEGYKPDVVV 367
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 32.5 bits (75), Expect = 0.31
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH----HTNPKLEFVVAN 91
+LD GCG G+++ +P L + K+V D+SP M++ A+ + F V
Sbjct: 66 RILDAGCGVGSLS----IP-LARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEV-- 118
Query: 92 IADQNLESI 100
+LES+
Sbjct: 119 ---GDLESL 124
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 31.9 bits (73), Expect = 0.50
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEFVVANI 92
VL++G G GN+T KL L + K++ +++ P M+ K +N KLE + +
Sbjct: 40 VLEIGPGTGNLTEKL----LQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94
Query: 93 ADQNL 97
Sbjct: 95 LKTEF 99
>gnl|CDD|235078 PRK02858, PRK02858, germination protease; Provisional.
Length = 369
Score = 31.9 bits (73), Expect = 0.57
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLP 54
AK S ++++ T S L VG G NVT L P
Sbjct: 95 AKEFSAFLEELGITKEASCLIVGLGNWNVTPDALGP 130
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 29.5 bits (67), Expect = 0.95
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 192 EIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVG 247
E + D +DL+ D G H + L L L LL PGG V
Sbjct: 59 EALARLPDGSIDLLFID------GDHTYEAVLADLELWLP------LLAPGGIIVF 102
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 31.0 bits (71), Expect = 0.96
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH-HTNPKLEFVVA 90
+ ++VL++G G G +T LL + ++ +++ + + K L +
Sbjct: 29 SPGDNVLEIGPGLGALTEPLL-----ERAARVTAIEIDRRLAEVLKERFAPYDNLTVING 83
Query: 91 NIADQNLESIFLAKFNKIFS 110
+ + S LA+ K+ +
Sbjct: 84 DALKFDFPS--LAQPYKVVA 101
>gnl|CDD|176756 cd08778, Death_TNFRSF21, Death domain of tumor necrosis factor
receptor superfamily member 21. Death domain (DD) found
in tumor necrosis factor receptor superfamily member 21
(TNFRSF21), also called death receptor-6, DR6. DR6 is an
orphan receptor that is expressed ubiquitously, but
shows high expression in lymphoid organs, heart, brain
and pancreas. Results from DR6(-/-) mice indicate that
DR6 plays an important regulatory role for the
generation of adaptive immunity. It may also be involved
in tumor cell survival and immune evasion. In neuronal
cells, it binds beta-amyloid precursor protein (APP) and
activates caspase-dependent cell death. It may
contribute to the pathogenesis of Alzheimer's disease.
In general, DDs are protein-protein interaction domains
found in a variety of domain architectures. Their common
feature is that they form homodimers by self-association
or heterodimers by associating with other members of the
DD superfamily including CARD (Caspase activation and
recruitment domain), DED (Death Effector Domain), and
PYRIN. They serve as adaptors in signaling pathways and
can recruit other proteins into signaling complexes.
Length = 84
Score = 28.9 bits (64), Expect = 1.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 301 IMNPFTEITGAQWSDYVSSLSESNKKDVARFISPY 335
I+ G+QW D L +++++VA F + Y
Sbjct: 5 ILKLVAAQVGSQWKDIYQFLCNASEREVAAFSNGY 39
>gnl|CDD|232858 TIGR00177, molyb_syn, molybdenum cofactor synthesis domain. The
Drosophila protein cinnamon, the Arabidopsis protein
cnx1, and rat protein gephyrin each have one domain like
MoeA and one like MoaB and Mog. These domains are,
however, distantly related to each other, as captured by
This model. Gephyrin is unusual in that it seems to be a
tubulin-binding neuroprotein involved in the clustering
of both blycine receptors and GABA receptors, rather
than a protein of molybdenum cofactor biosynthesis.
Length = 144
Score = 29.9 bits (68), Expect = 1.3
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 190 IKEIFSHFDDEKVDLVVFDG-----APDVT--GLHDL-DEHLQGLLLIGALNITTFLLKP 241
I+EI DE D+V+ G DVT L +L ++ + G T L +P
Sbjct: 56 IREILRKAVDE-ADVVLTTGGTGVGPRDVTPEALEELGEKEIPGFGEYF----TAVLSRP 110
Query: 242 GGTFVGKIFRSRNVVCL 258
G + + L
Sbjct: 111 GKPATAGVRGGTLIFGL 127
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 30.5 bits (70), Expect = 1.3
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 36 SVLDVGCGPGN--VTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK-N--HHTNPKLEFVVA 90
VLD+G G G + P+ ++ +D+SP + A+ N H ++EF+
Sbjct: 111 RVLDLGTGSGAIALALAKERPDA-----EVTAVDISPEALAVARRNAKHGLGARVEFLQG 165
Query: 91 NIADQNLESIFLAKFNKIFS 110
+ E + +F+ I S
Sbjct: 166 DW----FEPLPGGRFDLIVS 181
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 30.3 bits (69), Expect = 2.0
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 21/77 (27%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN--------- 82
TD + VL++G G G +T +L K K+ +++ P + + ++
Sbjct: 28 TDGDPVLEIGPGKGALTDELA-----KRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEG 82
Query: 83 -------PKLEFVVANI 92
P+ VV+N+
Sbjct: 83 DALKVDLPEFNKVVSNL 99
>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase.
Length = 340
Score = 30.1 bits (68), Expect = 2.3
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA----KNHHTNPKLEFVVANI 92
++DVGCG G +S+ L K + G+ +SP A + K+ F VA+
Sbjct: 122 IVDVGCGIGG-SSRYL---ARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA 177
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+Q E +F+ ++S + D+R+ + + + PGG +++
Sbjct: 178 LNQPFED---GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIII 221
>gnl|CDD|166698 PLN03059, PLN03059, beta-galactosidase; Provisional.
Length = 840
Score = 30.0 bits (67), Expect = 3.4
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 288 CQNYRPPKDYVPTIMNPFTEITGAQWSDYVSSLSESNKKD----VARFI 332
C+N++P KDY P + +TE ++++ ++ +D VARFI
Sbjct: 239 CENFKPNKDYKPKM---WTEAWTGWYTEFGGAVPNRPAEDLAFSVARFI 284
>gnl|CDD|235157 PRK03760, PRK03760, hypothetical protein; Provisional.
Length = 117
Score = 27.7 bits (62), Expect = 4.7
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 371 VSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVF-NGNLREVFPLDEQTVR 421
V ++ AL + P R +++ FM IDV+F + N R V D +T++
Sbjct: 31 VRNVNYALVFILPAETRFNASIHMFFMLSSIDVIFLDSNRRVV---DFKTLK 79
>gnl|CDD|223352 COG0275, COG0275, Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane].
Length = 314
Score = 28.7 bits (65), Expect = 5.8
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN-- 78
LL++ ++ + +D G G S+ +L LP + +L+G+D P I AK
Sbjct: 11 LLNEVVELLAPKPDGIYIDGTLGAG-GHSRAILEKLP-DLGRLIGIDRDPQAIAIAKERL 68
Query: 79 HHTNPKLEFVVANIAD 94
+ ++ V N A+
Sbjct: 69 KEFDGRVTLVHGNFAN 84
>gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT). This
family consists of thiopurine S-methyltransferase
proteins from both eukaryotes and prokaryotes.
Thiopurine S-methyltransferase (TPMT) is a cytosolic
enzyme that catalyzes S-methylation of aromatic and
heterocyclic sulfhydryl compounds, including anticancer
and immunosuppressive thiopurines.
Length = 203
Score = 28.6 bits (64), Expect = 5.9
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI- 73
Q LL ++ D VL CG L +VG+++S +
Sbjct: 4 QEGVNPLLVRHWDALNLPPGLRVLVPLCGKALDMVWLAEQGHF-----VVGVEISELAVE 58
Query: 74 KHAKNHHTNPKL-------EFVVANIADQNLESIF------LAKFNKIF--SFYCLHWVQ 118
K +P + E+ I F L KF+ I+ + C +
Sbjct: 59 KFFAEAGLSPPITELSGFKEYRAGGIELLC-GDFFTLPREDLGKFDLIYDRAALCALPPE 117
Query: 119 DQRQAISNIYNLLMPGGEVLLL 140
+ + +Y LL PGG LL+
Sbjct: 118 MRPRYAKQMYELLPPGGRGLLI 139
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 28.4 bits (64), Expect = 6.4
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVVANI 92
+LD+GCG G L+ + V +VGL +S N KHA+ K+E ++ +
Sbjct: 66 LLDIGCGWGG----LMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLLQDY 121
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQA--ISNIYNLLMPGGEVLL 139
D F F++I S V + +YNLL PGG +LL
Sbjct: 122 RD------FDEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLL 164
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 28.6 bits (65), Expect = 6.6
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 21/74 (28%)
Query: 34 NESVLDVGCGPG--NVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK-----NH------- 79
++VLDVGCG G + + L K++ +D+ P ++ A+ N
Sbjct: 120 GKTVLDVGCGSGILAIAAAKLGAK------KVLAVDIDPQAVEAARENAELNGVELNVYL 173
Query: 80 -HTNPKLEFVVANI 92
+ K + +VANI
Sbjct: 174 PQGDLKADVIVANI 187
>gnl|CDD|150114 pfam09338, Gly_reductase, Glycine/sarcosine/betaine reductase
component B subunits. This is a family of glycine
reductase, sarcosine reductase and betaine reductases.
These enzymes catalyze the following reactions.
sarcosine reductase: Acetyl phosphate + methylamine +
thioredoxin disulphide = N-methylglycine + phosphate +
thioredoxin Acetyl phosphate + NH(3) + thioredoxin
disulphide = glycine + phosphate + thioredoxin. betaine
reductase: Acetyl phosphate + trimethylamine +
thioredoxin disulphide = N,N,N-trimethylglycine +
phosphate + thioredoxin.
Length = 428
Score = 28.4 bits (64), Expect = 7.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 12/55 (21%)
Query: 292 RPPKDYVPTIMNPFTEIT-GAQWS-DYVSSLSESNKKDVARFISPYHHSKHPISE 344
K VPT+M P TE+ GA S + VS+ + Y H +P+ E
Sbjct: 217 VDAKKIVPTLMYP-TEVMDGAIVSGNCVSACDK---------NPTYVHQNNPVIE 261
>gnl|CDD|240683 cd12237, RRM_snRNP35, RNA recognition motif found in U11/U12 small
nuclear ribonucleoprotein 35 kDa protein (U11/U12-35K)
and similar proteins. This subfamily corresponds to the
RRM of U11/U12-35K, also termed protein HM-1, or U1
snRNP-binding protein homolog, and is one of the
components of the U11/U12 snRNP, which is a subunit of
the minor (U12-dependent) spliceosome required for
splicing U12-type nuclear pre-mRNA introns. U11/U12-35K
is highly conserved among bilateria and plants, but
lacks in some organisms, such as Saccharomyces
cerevisiae and Caenorhabditis elegans. Moreover,
U11/U12-35K shows significant sequence homology to U1
snRNP-specific 70 kDa protein (U1-70K or snRNP70). It
contains a conserved RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), followed by an adjacent
glycine-rich region, and Arg-Asp and Arg-Glu dipeptide
repeats rich domain, making U11/U12-35K a possible
functional analog of U1-70K. It may facilitate 5' splice
site recognition in the minor spliceosome and play a
role in exon bridging, interacting with components of
the major spliceosome bound to the pyrimidine tract of
an upstream U2-type intron. The family corresponds to
the RRM of U11/U12-35K that may directly contact the U11
or U12 snRNA through the RRM domain.
Length = 93
Score = 26.8 bits (60), Expect = 7.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 170 RCLLFTGVIQVQGDITKESTIKEIFSHFDD 199
LF G + +Q T E T++E+FS + D
Sbjct: 3 YLTLFVGRLSLQ---TTEETLREVFSRYGD 29
>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme. This family of enzymes
are related to pfam03919.
Length = 327
Score = 28.5 bits (64), Expect = 7.4
Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 34/166 (20%)
Query: 21 LLSQYIDQ-FKWTDNESVLDVGCGPGNVTSKLLLPNLPK----SVVKLVGLDVSPNMIKH 75
L+S Y + F+ VLD+ CG G +L K + L+G D++ I+
Sbjct: 50 LISLYASKTFQDKPKRKVLDLDCGKGG--------DLEKYFKGGISGLIGTDIAEVSIEQ 101
Query: 76 AK---------NHHTNPKLEFVVANIAD----QNLESIFL---AKFNKI---FSF-YCLH 115
A+ + K +F+ I ++ +F KF+ + F+ Y
Sbjct: 102 AQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFE 161
Query: 116 WVQDQRQAISNIYNLLMPGGEVLL-LLNAFNPIYDLYEKLSRKPKW 160
+ R + N+ LL GG+ + + I L +
Sbjct: 162 SEEKARTMLRNLAELLASGGKFIGTTPDGDFIIKKLTATFVEHKSF 207
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 28.8 bits (64), Expect = 7.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 228 LIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIA 272
LIG NIT GG +V K+F + + F +FFE VSI+
Sbjct: 432 LIGLSNITQ-----GGIYVFKLFDYYSASGMSLLFLVFFECVSIS 471
>gnl|CDD|191028 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This domain
forms one of the two distinctive lobes of the Rpb2
structure. This domain is also known as the protrusion
domain. The other lobe (pfam04561) is nested within this
domain.
Length = 394
Score = 28.5 bits (64), Expect = 8.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 259 ETKFQIFFENVSIAKPKSS 277
E +F + + +AKPK
Sbjct: 34 EPEFSLKVGQIKLAKPKIK 52
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 27.9 bits (62), Expect = 8.2
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 315 DYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDL 374
D+ L++S +++ + +HH H I E+T ++ + I H D Y +
Sbjct: 100 DWFFDLNDSEQQEATDLLLKFHHLPH-IIEITN--DNIKYVIAHADYPGDEYDFGKEIAE 156
Query: 375 RQALTSVNPFLERIPSTLQDDFMNDC 400
+ L V+ + + LQ D
Sbjct: 157 SELLWPVDRVQKSLNGELQQINGADY 182
>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase. This model
describes a set of proteins with homology in its central
region to a large number of methyltransferases active on
a variety of substrates. The similarity includes a motif
resembling ILDVGCG[SG]G. Known examples to date are
restricted to the proteobacteria [Unknown function,
Enzymes of unknown specificity].
Length = 314
Score = 28.0 bits (62), Expect = 9.1
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 31/143 (21%)
Query: 15 QLDAAKLLSQYIDQFKWTD---------NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVG 65
+L K+ S++ KW ++LDVGCG G ++L KS LVG
Sbjct: 94 ELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKS---LVG 149
Query: 66 LDVSPNMIKHAKNHHTNPKLEFV---VANIADQNLESI------FLAKFNKIFSFYCLHW 116
+D + + + E V + N LE + L F+ +FS L+
Sbjct: 150 IDPTVLFLC---------QFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH 200
Query: 117 VQDQRQAISNIYNLLMPGGEVLL 139
+ + + + + L+ GE++L
Sbjct: 201 RKSPLEHLKQLKHQLVIKGELVL 223
>gnl|CDD|216553 pfam01528, Herpes_glycop, Herpesvirus glycoprotein M. The
herpesvirus glycoprotein M (gM) is an integral membrane
protein predicted to contain 8 transmembrane segments.
Glycoprotein M is not essential for viral replication.
Length = 374
Score = 28.4 bits (64), Expect = 9.3
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 351 SVGFNIHHCDSNTSSYSYRTVSDLRQALTSVNPFLERI 388
S F + +SS++Y L AL ++P L R+
Sbjct: 165 STVFTVSFITRGSSSWTY---KRLVFALPKLHPLLHRV 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.405
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,885,935
Number of extensions: 2109095
Number of successful extensions: 2122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2061
Number of HSP's successfully gapped: 95
Length of query: 433
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 333
Effective length of database: 6,502,202
Effective search space: 2165233266
Effective search space used: 2165233266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)