RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11646
(433 letters)
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 170 bits (433), Expect = 3e-51
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 176 GVIQ-VQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNI 234
G D+T T + I + D+++ D AP+ TG DLD L + L++
Sbjct: 71 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV 130
Query: 235 TTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRPP 294
T +L+PGGTF+ K + L+ + F+NV I KP++SR S E + + Y
Sbjct: 131 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 190
Query: 295 KDYVP 299
K V
Sbjct: 191 KGTVK 195
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 161 bits (410), Expect = 4e-48
Identities = 39/118 (33%), Positives = 59/118 (50%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNIT 235
GV +QGD E +K + D KV +V+ D AP+++G +D L+ AL +
Sbjct: 63 GVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMC 122
Query: 236 TFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293
+L PGG+FV K+F+ + + F V + KP SSR S E +IV +P
Sbjct: 123 RDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 157 bits (400), Expect = 2e-46
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 176 GVIQVQGDITKESTIKEIFSHFDD---EKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGAL 232
GV ++ DI KE+ +I + EKVD VV D V+G+ D + + +
Sbjct: 63 GVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVM 122
Query: 233 NITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYR 292
I L+ GG + K F+ ++ F + I+KP +SR SS E +I+ ++
Sbjct: 123 EIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFK 182
Query: 293 PPK 295
Sbjct: 183 AEG 185
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 147 bits (374), Expect = 2e-42
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 176 GVIQVQGDITKE-----------------STIKEIFSHFDDEKVDLVVFDGAPDVTGLHD 218
V +QG+I K+ S ++ D+K+D+++ D A G
Sbjct: 64 NVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKI 123
Query: 219 LDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSR 278
D L + + + GGT++ K++ L+T + F+ V KPK+SR
Sbjct: 124 DDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPKASR 183
Query: 279 NSSIESFIVCQNYRPPK 295
N S E ++VC+N+ K
Sbjct: 184 NESREIYLVCKNFLGRK 200
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 108 bits (271), Expect = 3e-27
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 15/162 (9%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
A Y + A LL Q + D+GCGPGN T +LL +V+
Sbjct: 8 AQQYLKFEDERTRPARDLL----AQVPLERVLNGYDLGCGPGNST-ELLTDRYGVNVI-- 60
Query: 64 VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
G+D +M++ A + P F A++A K + +++ WV D
Sbjct: 61 TGIDSDDDMLEKAADRL--PNTNFGKADLATWKPA----QKADLLYANAVFQWVPDHLAV 114
Query: 124 ISNIYNLLMPGGEVLLLL--NAFNPIYDLYEKLSRKPKWTEY 163
+S + + L GG + + + N P + + + W +
Sbjct: 115 LSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDA 156
Score = 41.4 bits (97), Expect = 3e-04
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 340 HPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQAL------TSVNPFLERIPSTLQ 393
P S+ L + + Y ++ T + P+L +
Sbjct: 168 PPPSDYFNALSPKSSRVDVWHTV-----YNHPMKDADSIVEWVKGTGLRPYLAAAGEENR 222
Query: 394 DDFMNDCIDVVFNGNLREVFPLDEQ-TVRFNYTQIIVFARK 433
+ F+ D + +P + + ++ V A K
Sbjct: 223 EAFLADYTRR-----IAAAYPPMADGRLLLRFPRLFVVAVK 258
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 105 bits (265), Expect = 3e-26
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
ATLY+ +S LL E +LD+GCG G +T K+ +S ++
Sbjct: 32 ATLYQDKHSFVWQYGEDLL----QLLNPQPGEFILDLGCGTGQLTEKIA-----QSGAEV 82
Query: 64 VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
+G D + MI+ A+ ++ P L F VA+ + ++ + +FS LHWV++ A
Sbjct: 83 LGTDNAATMIEKARQNY--PHLHFDVADARNFRVD----KPLDAVFSNAMLHWVKEPEAA 136
Query: 124 ISNIYNLLMPGGEVLL 139
I++I+ L GG +
Sbjct: 137 IASIHQALKSGGRFVA 152
Score = 35.5 bits (82), Expect = 0.021
Identities = 14/110 (12%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 329 ARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSDLRQAL-----TSVNP 383
+ ++P++ I E +L+ GF++ + T+++ + +
Sbjct: 179 PQALNPWYF--PSIGEYVNILEKQGFDVTYA---ALFNRPTTLAEGEFGMANWIQMFASA 233
Query: 384 FLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFARK 433
FL + Q + L++ +++ +Y +I + + K
Sbjct: 234 FLVGLTPDQQVQLIRKVEAT-----LQDKLY-HQESWTADYRRIRIVSIK 277
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 92.8 bits (230), Expect = 9e-22
Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 10/140 (7%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
++D CG G T L + +++GLDVS + ++ A +T + + + +
Sbjct: 58 LPLIDFACGNGTQTKFLS-----QFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLV 112
Query: 95 QNLESIFLAKF--NKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDL 150
+ ++ I+ H + + + ++ LL G + L+ I D
Sbjct: 113 PEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI-DF 171
Query: 151 YEKLSRKPKWTEYTQVRTYR 170
+ L K Y +
Sbjct: 172 FNSLLEKYGQLPYELLLVME 191
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 91.9 bits (228), Expect = 2e-21
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 12/145 (8%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
+ + + ++ L + + F ++VLD+GCG G + K V+
Sbjct: 18 SQMPRSKEGLKAAGEWHELKKMLPDFN---QKTVLDLGCGFGWH-CIYAAEHGAKKVL-- 71
Query: 64 VGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
G+D+S M+ AK T+P + + I D +E +N + S LH++
Sbjct: 72 -GIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEP---DAYNVVLSSLALHYIASFDDI 127
Query: 124 ISNIYNLLMPGGEVLLLLNAFNPIY 148
+Y L G + + +P++
Sbjct: 128 CKKVYINLKSSGS--FIFSVEHPVF 150
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 91.1 bits (226), Expect = 4e-21
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
VLDVGCG G T KL ++ K VG+D+S MI+ K P L F+ +++
Sbjct: 54 EAEVLDVGCGDGYGTYKLS-----RTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLS 108
Query: 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL--LLNAFNPIYDLY 151
E+ +F I + L W ++ +A++ I +L G + L P + Y
Sbjct: 109 SLPFEN---EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSY 165
Query: 152 EKLSRKPKWTEYTQVRTYRCLL----FTGVIQVQGDITKESTIKEIFSHFDDE 200
+L K + L+ F V + + K +++ +
Sbjct: 166 PRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI--GVYKRGVNEKMLGQLSTD 216
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 88.8 bits (220), Expect = 1e-20
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 15/152 (9%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTD---NESVLDVGCGPGNVTSKLLLPNLPKSV 60
A Y++ + + ++ + Y D + +VL+ G G GN+T+KLL +
Sbjct: 13 AHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLL-----LAG 67
Query: 61 VKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD- 119
+ G++ S M AK + + + + I S Y H + D
Sbjct: 68 RTVYGIEPSREMRMIAKEKL-PKEFSITEGDFLSFEVP----TSIDTIVSTYAFHHLTDD 122
Query: 120 -QRQAISNIYNLLMPGGEVLLLLNAFNPIYDL 150
+ AI+ LL GG+++ F
Sbjct: 123 EKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 88.3 bits (219), Expect = 2e-20
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH 75
+ A I+ + + +LDVG G G T L ++ GL+ + +++
Sbjct: 24 ISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLA-----SLGHQIEGLEPATRLVEL 78
Query: 76 AKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMP 133
A+ H P + F I D + ++ + ++Y L + + A+ + +
Sbjct: 79 ARQTH--PSVTFHHGTITDLSDSP---KRWAGLLAWYSLIHMGPGELPDALVALRMAVED 133
Query: 134 GGEVLL 139
GG +L+
Sbjct: 134 GGGLLM 139
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 88.9 bits (220), Expect = 4e-20
Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 10/132 (7%)
Query: 177 VIQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITT 236
V + +I +I + K D ++ D + +G + L+
Sbjct: 117 VQSLGWNIITFKDKTDIH-RLEPVKCDTLLCDIGESSS-----SSVTEGERTVRVLDTVE 170
Query: 237 FLLKPG-GTFVGKIFR--SRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIVCQNYRP 293
L G F K+ +V+ Q F I P S RNS+ E + V
Sbjct: 171 KWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPLS-RNSTHEMYYVSGARSN 229
Query: 294 PKDYVPTIMNPF 305
V
Sbjct: 230 VTFTVNQTSRLL 241
Score = 29.9 bits (67), Expect = 1.6
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLL-LPNLPKSVVKLVGLDVSPNMI 73
AKL + ++ V+D+GCG G + +G D +
Sbjct: 60 TAKLR-WFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPM 115
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 87.5 bits (217), Expect = 7e-20
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
++D+GCG G S V +GLD+S M+ A+ + + + A++
Sbjct: 44 GLRIVDLGCGFGWFC--RWAHEHGASYV--LGLDLSEKMLARARAAGPDTGITYERADLD 99
Query: 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK 153
+L F+ +S LH+V+D + ++ L PGG + + +PIY
Sbjct: 100 KLHLPQ---DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGH--FVFSTEHPIYMAP-- 152
Query: 154 LSRKPKWTEYTQVRTYR 170
+P W + R
Sbjct: 153 --ARPGWAIDAEGRRTW 167
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 86.4 bits (214), Expect = 1e-19
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVAN 91
+N +LD+G G G ++ L+ P++ +D+S M++ AKN N K++++ A+
Sbjct: 44 ENPDILDLGAGTGLLS-AFLMEKYPEA--TFTLVDMSEKMLEIAKNRFRGNLKVKYIEAD 100
Query: 92 IADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGGEVLLL 140
+ + E K++ + S +H ++ D+++ Y++L G +
Sbjct: 101 YSKYDFE----EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINA 147
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 84.8 bits (210), Expect = 2e-19
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI 92
+LD GCG G + L K ++G D+ P +I +AK P+ +VV ++
Sbjct: 46 RGAKILDAGCGQGRIGGYLS-----KQGHDVLGTDLDPILIDYAKQDF--PEARWVVGDL 98
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWV---QDQRQAISNIYNLLMPGGEVLL 139
+ + F+ I S + + A++NI+ L G ++
Sbjct: 99 SVDQISE---TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 83.9 bits (208), Expect = 2e-19
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82
+Y+ ++D GCG G LL + KL +D++ +K K
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLL-----EFATKLYCIDINVIALKEVKE---- 57
Query: 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
K + V+ + + + I H + D++ IS + +L G V+++
Sbjct: 58 -KFDSVITLSDPKEIPD---NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIII 111
Score = 27.7 bits (62), Expect = 5.2
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 196 HFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFV 246
D VD ++F HD+D+ ++ I LK G +
Sbjct: 70 EIPDNSVDFILF-----ANSFHDMDDKQH--VISEVKRI----LKDDGRVI 109
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 85.5 bits (211), Expect = 7e-19
Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 18/206 (8%)
Query: 7 YETNNSMQQLDAAKLLSQYIDQFKWTDNE-SVLDVGCGPGNVTSKL---LLPNLPKSVVK 62
+ T + Q K L I + T +E +L +G G G + ++ + P +
Sbjct: 25 HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84
Query: 63 LVGLDVSPNMIKHAKNH------HTNPKLEFVVANI---ADQNLESIFLAKFNKIFSFYC 113
++ S I K N K + + LE L K++ I
Sbjct: 85 NEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 144
Query: 114 LHWVQDQRQAISNIYNLLMPGGEVLLLLNAFN-PIYDLYEKLSRKPKWTEYTQVRT---- 168
L++V+D + ++LL ++L+++ + + L++K + + Q T
Sbjct: 145 LYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDL 204
Query: 169 YRCLLFTGVIQVQGDITKESTIKEIF 194
+ L G+ D+ I + F
Sbjct: 205 TQMLDNLGLKYECYDLLSTMDISDCF 230
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 82.7 bits (204), Expect = 2e-18
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
VL++ G G T L ++ LD S MI A H +EF ++ D
Sbjct: 48 GDVLELASGTGYWTRHLS-----GLADRVTALDGSAEMIAEAGRHGL-DNVEFRQQDLFD 101
Query: 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQ--AISNIYNLLMPGGEVLLL 140
+ +++ +F + L V D R ++ + + PGG V +
Sbjct: 102 WTPD----RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFV 145
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 82.5 bits (204), Expect = 3e-18
Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 10/146 (6%)
Query: 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA 76
A ++ + + S+LDV CG G K GL++S +M+ HA
Sbjct: 25 AEASDIADLVRSRT-PEASSLLDVACGTGTHLEHFT-----KEFGDTAGLELSEDMLTHA 78
Query: 77 KNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGE 136
+ P ++ D L F A + S L ++ A+++ L PGG
Sbjct: 79 RKR--LPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG- 135
Query: 137 VLLLLNAFNPIYDLYEKLSRKPKWTE 162
++++ + +
Sbjct: 136 -VVVVEPWWFPETFADGWVSADVVRR 160
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 83.5 bits (206), Expect = 3e-18
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--HTNPKLEFVVAN 91
++D GCG G + +L+P LP+ K G+D ++ A+ EF+ +
Sbjct: 23 PVHIVDYGCGYGYLG-LVLMPLLPEG-SKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 80
Query: 92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
+E K++ L + + + + + GG+++
Sbjct: 81 A--TEIE--LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICF 125
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 81.0 bits (200), Expect = 7e-18
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 23/130 (17%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI-- 92
ES+L+VG G G +L P VG++ S M+ + P+ +V A
Sbjct: 38 ESLLEVGAGTGYWLRRL-----PYPQK--VGVEPSEAMLAVGRRRA--PEATWVRAWGEA 88
Query: 93 ---ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL-LNAFNPIY 148
F+ + F L +V+D + + +L PGG +++ L A +P
Sbjct: 89 LPFPG--------ESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWA 140
Query: 149 DLYEKLSRKP 158
LY +L K
Sbjct: 141 ALYRRLGEKG 150
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 80.3 bits (198), Expect = 1e-17
Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 13/164 (7%)
Query: 13 MQQLDAAKLLSQYID-QFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN 71
M+ + L +++ + +++VLD G G + + + K G+++S
Sbjct: 2 MKTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFV----EDGYKTYGIEISDL 57
Query: 72 MIKHAKNH--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNI 127
+K A+N N KL +I + + ++S+ + ++ D ++AI I
Sbjct: 58 QLKKAENFSRENNFKLNISKGDIRKLPFKD---ESMSFVYSYGTIFHMRKNDVKEAIDEI 114
Query: 128 YNLLMPGGEVLL-LLNAFNPIYDLYEKLSRKPKWTEYTQVRTYR 170
+L PGG + L + Y+ EK+ +
Sbjct: 115 KRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIH 158
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 79.9 bits (197), Expect = 4e-17
Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKW--TDNESVLDVGCGPGNVTSKLLLPNLPKSVV 61
A LY+ + + D + + + S+LDV CG G L S
Sbjct: 19 AELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLA-----DSFG 73
Query: 62 KLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQR 121
+ GL++S +M+ A+ NP ++ D +L F A S L +
Sbjct: 74 TVEGLELSADMLAIARRR--NPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELD 131
Query: 122 QAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTE 162
A+ ++P G ++++ + +
Sbjct: 132 AALERFAAHVLPDG--VVVVEPWWFPENFTPGYVAAGTVEA 170
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 79.1 bits (195), Expect = 4e-17
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
E VLD+GCG G + L ++ VG+D ++ A+ A +A
Sbjct: 53 PERVLDLGCGEGWLLRALA-----DRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLA 107
Query: 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIY 148
+ + ++ I + + L D + +S + LL+PGG L++ +P
Sbjct: 108 EAKVP--VGKDYDLICANFALLHQ-DIIELLSAMRTLLVPGG--ALVIQTLHPWS 157
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 78.3 bits (193), Expect = 6e-17
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 19/137 (13%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIA 93
+++G G G L +G++ S M + A+ + +
Sbjct: 48 EGRGVEIGVGTGRFAVPL---------KIKIGVEPSERMAEIARKRG----VFVLKGTAE 94
Query: 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL-LNAFNPIYDLYE 152
+ L+ F+ + +V D +A+ Y +L GG +++ ++ + + YE
Sbjct: 95 NLPLKD---ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYE 151
Query: 153 KLSRKPKWTEYTQVRTY 169
K K K Y R +
Sbjct: 152 K--NKEKSVFYKNARFF 166
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 79.1 bits (195), Expect = 7e-17
Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 14/187 (7%)
Query: 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
+ + + + VLD+ CG G T +L + ++VGLD+ M++ A+
Sbjct: 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA-----ERGYEVVGLDLHEEMLRVARR 81
Query: 79 H--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFY---CLHWVQDQRQAISNIYNLLMP 133
N K+EF+ ++ + ++ +F+ + F+ +D R+ S + L P
Sbjct: 82 KAKERNLKIEFLQGDVLEIAFKN----EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKP 137
Query: 134 GGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEI 193
GG + + + + K E + +R + + +
Sbjct: 138 GGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGE 197
Query: 194 FSHFDDE 200
F +
Sbjct: 198 VKAFLVD 204
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 79.7 bits (196), Expect = 8e-17
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK---- 77
+ ID++ + + ++DVGCGPG T L + K +++G D+S MIK A+
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTAT--LQMAQELKPFEQIIGSDLSATMIKTAEVIKE 82
Query: 78 -NHHTNPKLEFVVA---NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMP 133
+ T + F ++ + +S+ K + I + C HW D + + Y L
Sbjct: 83 GSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRK 141
Query: 134 GGEVLLLLNAFNPIYDLYEKLSR 156
G + + +PI+ Y +
Sbjct: 142 DG-TIAIWGYADPIFPDYPEFDD 163
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 76.9 bits (189), Expect = 2e-16
Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 21/190 (11%)
Query: 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
LL +Y+ + VLD+ CG G + L ++VG+D+S +MI+ A+ +
Sbjct: 30 PLLMKYMKK-----RGKVLDLACGVGGFSFLLE-----DYGFEVVGVDISEDMIRKAREY 79
Query: 80 --HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ--DQRQAISNIYNLLMPGG 135
+EF+V + + E F+ + + + + Q + +L P G
Sbjct: 80 AKSRESNVEFIVGDARKLSFED---KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 136
Query: 136 EVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFS 195
+ F + +L +L + + V +++ + + F+
Sbjct: 137 ---KFIMYFTDLRELLPRLKESLVVGQKYWISKVI-PDQEERTVVIEFKSEQDSFRVRFN 192
Query: 196 HFDDEKVDLV 205
+ V+L+
Sbjct: 193 VWGKTGVELL 202
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 77.6 bits (191), Expect = 2e-16
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN 91
+ D+G G G + L + + ++ S M + A H P++E+
Sbjct: 33 PKGSVIADIGAGTGGYSVALA-----NQGLFVYAVEPSIVMRQQAVVH---PQVEWFTGY 84
Query: 92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLN 142
+ L + + S +H ++ + ++ G VLL +
Sbjct: 85 AENLALPD---KSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFD 132
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 76.7 bits (189), Expect = 4e-16
Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVVA 90
VLD+G G G+ V + +G+D + M++ A + + F
Sbjct: 22 EHRVLDIGAGAGHTALAFS-----PYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQG 76
Query: 91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL------LNAF 144
F+ I Y H D R+A+ + +L G LL+
Sbjct: 77 TAESLPFPD---DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL 133
Query: 145 NPIYDLYEKLSRKPKWTEYTQVRTYRCLL 173
+ + +L R P + + ++ +
Sbjct: 134 DEFVNHLNRL-RDPSHVRESSLSEWQAMF 161
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 77.3 bits (190), Expect = 4e-16
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLEFVVA 90
VL+ GCG G T +L N P + + +D+SP ++ A+ + ++F+ A
Sbjct: 38 GAKVLEAGCGIGAQT-VILAKNNPDAEI--TSIDISPESLEKARENTEKNGIKNVKFLQA 94
Query: 91 NIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
NI E + F+ IF + L +Q +A+ ++ +L PGG + ++
Sbjct: 95 NIFSLPFED---SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 76.3 bits (188), Expect = 5e-16
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Query: 13 MQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNM 72
MQ + + ++ ++Q + + + D+GCG G T L ++ G+D+S M
Sbjct: 15 MQDVPYPEWVAWVLEQVE--PGKRIADIGCGTGTATLLL------ADHYEVTGVDLSEEM 66
Query: 73 IKHAKNH--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNL 130
++ A+ TN ++F V ++ + L A S L D +Q + L
Sbjct: 67 LEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARL 126
Query: 131 LMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCL 172
L GG LL + +P E L + + + +Y
Sbjct: 127 LTDGG--KLLFDVHSP--YKMETLFNGKTYATHAEQSSYIWF 164
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 75.7 bits (186), Expect = 5e-16
Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 14 QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI 73
++ + L++++ + +L++GCG G +L + + D SP +
Sbjct: 26 ERQPRSATLTKFLGELP--AGAKILELGCGAGYQAEAML-----AAGFDVDATDGSPELA 78
Query: 74 KHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLL 131
A P + + + ++ +++ CL V + + I+ L
Sbjct: 79 AEASRRLGRPVRTMLFHQLD-------AIDAYDAVWAHACLLHVPRDELADVLKLIWRAL 131
Query: 132 MPGGEVLLLLNAFNPIYDLYEKLSR 156
PGG L + + + +KL+R
Sbjct: 132 KPGG--LFYASYKSGEGEGRDKLAR 154
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 75.9 bits (187), Expect = 7e-16
Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 12/184 (6%)
Query: 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
+ + + + + LD+ CG GN+T L +D+S M+ A+N
Sbjct: 24 SDFIIEKCVENN-LVFDDYLDLACGTGNLTENLC-----PKFKNTWAVDLSQEMLSEAEN 77
Query: 79 H--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGE 136
K +I++ N+ F + S + D ++ + N L GG
Sbjct: 78 KFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG- 136
Query: 137 VLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSH 196
+ + + + ++ + Y V I+ E +
Sbjct: 137 -VFIFDINSY--YKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193
Query: 197 FDDE 200
FD+E
Sbjct: 194 FDEE 197
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 76.0 bits (187), Expect = 8e-16
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
L++ + NE VLDV G G+V + V K+V D++ +++K A+
Sbjct: 22 KGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFA-----PFVKKVVAFDLTEDILKVAR 76
Query: 78 NHHTN---PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPG 134
++E+V + +F+ + H + +S Y +L G
Sbjct: 77 AFIEGNGHQQVEYVQGDAEQMPFTD---ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG 133
Query: 135 GEVLLL------LNAFNPIYDLYEKL 154
G++LL+ +AF+ Y+ EK
Sbjct: 134 GQLLLVDNSAPENDAFDVFYNYVEKE 159
Score = 33.2 bits (76), Expect = 0.14
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 24/113 (21%)
Query: 328 VARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSY-------RTVSDLRQALTS 380
V + HH S+ +L+ GF + ++ + ++ +Q L+
Sbjct: 156 VEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSD 215
Query: 381 VNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFARK 433
F++ P+ F ++ D + F I++ ARK
Sbjct: 216 ---FIKSKPTEYYQKF--------------KIVVEDGRVYSFRGESILMKARK 251
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 73.9 bits (181), Expect = 2e-15
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 14/109 (12%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVAN 91
T VL+ GCG G ++ + D SP ++K A+ + P + N
Sbjct: 47 TPQTRVLEAGCGHGPDAARFG-----PQAARWAAYDFSPELLKLARANA--PHADVYEWN 99
Query: 92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
+ L + A F I S I + L P L +
Sbjct: 100 GKGE-LPAGLGAPFGLIVSRR------GPTSVILRLPELAAPDAHFLYV 141
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 74.6 bits (183), Expect = 3e-15
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 11/146 (7%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFK-WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVK 62
A Y+ + A ++ + + L++G G G + L+ +
Sbjct: 9 AYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLI-----ARGYR 63
Query: 63 LVGLDVSPNMIKHAKNHH--TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ 120
+ LD M++ + + K++ V A+ L + + + H V D
Sbjct: 64 YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPD---ESVHGVIVVHLWHLVPDW 120
Query: 121 RQAISNIYNLLMPGGEVLLLLNAFNP 146
+ ++ +L PGG +L +
Sbjct: 121 PKVLAEAIRVLKPGGALLEGWDQAEA 146
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 74.6 bits (183), Expect = 4e-15
Identities = 29/187 (15%), Positives = 65/187 (34%), Gaps = 23/187 (12%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
A Y +Q D ++ + + VL++ G G +T L ++
Sbjct: 56 ADTYRDL--IQDADGTSEAREFATRTG-PVSGPVLELAAGMGRLTFPFL-----DLGWEV 107
Query: 64 VGLDVSPNMIKHAKNH------HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC-LHW 116
L++S +++ + + V +++ L+ +F + ++
Sbjct: 108 TALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD----KRFGTVVISSGSINE 163
Query: 117 V--QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLF 174
+ D+R +++ L PGG LL+ E L RK + + R +
Sbjct: 164 LDEADRRGLYASVREHLEPGG--KFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRH 221
Query: 175 TGVIQVQ 181
++Q
Sbjct: 222 LPAEEIQ 228
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 73.4 bits (180), Expect = 8e-15
Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 15/143 (10%)
Query: 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT 81
+ + + +VLD+GCG G T LP+ GLDVS IK A +
Sbjct: 74 IVAQLRERLDDKATAVLDIGCGEGYYT-HAFADALPEITT--FGLDVSKVAIKAAAKRY- 129
Query: 82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLL 141
P++ F VA+ + I Y ++ + + PGG V+
Sbjct: 130 -PQVTFCVASSHRLPFSD---TSMDAIIRIYAPCKAEELARV-------VKPGGWVITAT 178
Query: 142 NAFNPIYDLYEKLSRKPKWTEYT 164
+ +L + +
Sbjct: 179 PGPRHLMELKGLIYNEVHLHAPH 201
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 71.7 bits (176), Expect = 1e-14
Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 18/158 (11%)
Query: 3 KATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVK 62
K + + ++ D K+L +F + +VLDVG G G L + K
Sbjct: 11 KIKKLDDPSRLELFDPEKVL----KEFGLKEGMTVLDVGTGAGFYL--PYLSKMVGEKGK 64
Query: 63 LVGLDVSPNMIKHAKNHHTNPKL---EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD 119
+ +DV M+ +A L E + + L + IF + H + +
Sbjct: 65 VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD---NTVDFIFMAFTFHELSE 121
Query: 120 QRQAISNIYNLLMPGGEVLLL------LNAFNPIYDLY 151
+ + + + P + ++ + P ++Y
Sbjct: 122 PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVY 159
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 72.8 bits (178), Expect = 2e-14
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 13/113 (11%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEFVV 89
V V CG + L L V+LVG+D P + + A H ++
Sbjct: 119 GCVVASVPCGWMSEL--LALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHR 176
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAIS---NIYNLLMPGGEVLL 139
+ + ++ + S + D + + L PGG ++
Sbjct: 177 QDAWKLDTR----EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 70.6 bits (173), Expect = 3e-14
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 36 SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEFVVAN 91
+ +D+G GPG ++ L +S + LD S +M K+ + + N +++ V +
Sbjct: 46 TCIDIGSGPGALSIALA----KQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101
Query: 92 IADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL-LNAFNPIYDL 150
+ + +E + I S + + +D A IY +L GG+ + + D
Sbjct: 102 VHNIPIED---NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDS 158
Query: 151 Y--EKLSRKPKWTEY 163
E + + P W E+
Sbjct: 159 ISAEMIRKNPDWKEF 173
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 71.6 bits (175), Expect = 4e-14
Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)
Query: 4 ATLYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKL 63
A +++ + A+ + + + VLDV CG G + L+ + +
Sbjct: 28 ARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV-----EEGFSV 82
Query: 64 VGLDVSPNMIKHAKNHHTNPKLE-------FVVANIADQNLESIFLAKFNKIF----SFY 112
+D S M+K+A N + E AN + + F+ + SF
Sbjct: 83 TSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFA 142
Query: 113 CLHWVQ----DQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYT 164
L + + R A+ NI +++ PGG LL+++ N Y L + K Y
Sbjct: 143 HLPDSKGDQSEHRLALKNIASMVRPGG--LLVIDHRNYDYILSTGCAPPGKNIYYK 196
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 72.4 bits (177), Expect = 4e-14
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 16/120 (13%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH-----------HTN 82
+VLD+GCG G L L K++G+D+ N ++ A+ + +
Sbjct: 84 GATVLDLGCGTGRDV--YLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSR 141
Query: 83 PKLEFVVANI---ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+ F+ I A E + + + + S + ++ I+ +L GGE+
Sbjct: 142 SNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYF 201
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 70.9 bits (173), Expect = 4e-14
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 10/133 (7%)
Query: 24 QYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNP 83
+I LD G G G +T LL L + L+ +M++ AK
Sbjct: 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTK-LYATT---DLLEPVKHMLEEAKRELAGM 139
Query: 84 KL-EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGGEVLLL 140
+ +F++A++ L ++ I + ++ D + + L P G +
Sbjct: 140 PVGKFILASMETATLPP---NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196
Query: 141 LNAFNPIYDLYEK 153
N L +K
Sbjct: 197 ENCSTGDRFLVDK 209
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 70.3 bits (172), Expect = 7e-14
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
VLD+G G G + L + ++V +D S M++ A+ V A D
Sbjct: 58 VLDLGGGTGKWSLFLQ-----ERGFEVVLVDPSKEMLEVAREKG---VKNVVEAKAEDLP 109
Query: 97 LESIFLAKFNKIFSF-YCLHWVQDQRQAISNIYNLLMPGGEVLLL-LNAFNPIYDLYEKL 154
S F + + L +V+++ +A S I +L+P G ++ N + + + EK
Sbjct: 110 FPS---GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKD 166
Query: 155 SRK 157
+
Sbjct: 167 AWD 169
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 67.8 bits (165), Expect = 7e-13
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL----EFVV 89
+SVLD+GCG G K + + G+D++ I A+ N K F
Sbjct: 65 GDSVLDLGCGKGGDLLKYER----AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 120
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLLLLNAFN 145
+ ++++ +F+ I S + H+ + A NI L PGG ++ + + +
Sbjct: 121 QDSYGRHMDLGK--EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 178
Query: 146 PIYDLYEK 153
I + Y++
Sbjct: 179 VILERYKQ 186
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 65.2 bits (159), Expect = 2e-12
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH-TNPKLEFVVANIA 93
+ L++GC G L +L +DV P I A + + +I
Sbjct: 53 SNGLEIGCAAG-----AFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDIL 107
Query: 94 DQNLESIFLAKFNKIFSFYCLHWVQDQ---RQAISNIYNLLMPGGEVLL 139
+ F+ I L++++D R AI N+ +L PGG ++
Sbjct: 108 QFSTA----ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 1e-11
Identities = 83/541 (15%), Positives = 141/541 (26%), Gaps = 200/541 (36%)
Query: 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVG--LDVSPNMIKHAKNHH 80
SQ +QF E T + P + +LVG L ++++ +K
Sbjct: 31 SQLQEQFNKILPE-----------PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 81 TNPKLEFVVANIADQNLESIFLAKFNKIFSFYC-LHWVQDQRQA-----ISNIYNLLMPG 134
+ L + E+ +L + N I + L D I N +
Sbjct: 80 FDQVLNLCL-----TEFENCYL-EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 135 GEVL------LLLNAFN----PIY---------DLYEKLSRKPKWTE----YTQVRTYRC 171
L A + D Y + E Y TY
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--------FEELRDLYQ---TYHV 182
Query: 172 L---LFTGVIQV-QGDITKESTIKEIFSH-FD--------DEKVDLVVFDGAP------- 211
L L + I +++F+ + D P
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 212 -----------DVTGLH--DLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCL 258
+ G +L +L+G +T + + + F +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS--WESFFVSVRKAI 300
Query: 259 ETKFQI------FFENVSIAKPKSSRNS--------------------SIESFIVCQN-Y 291
F I + N S+ P +S ++ ++ N +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 292 RP------------PKDYVPTIMNPFTEITGAQWSDYVSSL------------------- 320
P K+ V ++G SL
Sbjct: 360 LPAGKQVEISLVNGAKNLV---------VSG-----PPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 321 ----SESNKKDVARF--IS-PYHHSKH--PISEMTAL-LQSVGFNIHHCDSNTSSYSYRT 370
SE K RF ++ P+H S P S++ L + + D Y
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 371 VSDLRQALTSVNPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLD-EQTVRFNYTQIIV 429
SDLR S++ + DCI +R P+ E T +F T I+
Sbjct: 465 GSDLRVLSGSISERI------------VDCI-------IRL--PVKWETTTQFKATHILD 503
Query: 430 F 430
F
Sbjct: 504 F 504
Score = 45.4 bits (107), Expect = 3e-05
Identities = 70/459 (15%), Positives = 124/459 (27%), Gaps = 152/459 (33%)
Query: 64 VGLDVSPNMIKHA-------KNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHW 116
L V A P F + E + KF Y
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE--LVGKFLG----YVSSL 71
Query: 117 VQDQRQAISNIYNLLMPGGEVL-LLLNAF-------NPIYDLYEKL---SRKPKWTEYTQ 165
V+ + +VL L L F N I+ L KL +
Sbjct: 72 VEPSKVG---------QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 166 VRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVDL-VVFDGAPDVTGLHDLDEHLQ 224
++ Y T I + K+S +F + L +F G Q
Sbjct: 123 IKNY----ITARIMAKRPFDKKSN-SALFRAVGEGNAQLVAIFGG--------------Q 163
Query: 225 GLLLIGALNITTFL--L----KPGGTFVGKIFRSRNVVCLETKFQIFFENVSIAKPKSSR 278
G N + L + VG + + A+ ++
Sbjct: 164 G-------NTDDYFEELRDLYQTYHVLVGDLIKF-----SAETLSELIRTTLDAEKVFTQ 211
Query: 279 NSSIESFIVCQNYRPPKDYVPTIMNPFT--EITGAQWSDY-----VSSLSESNKKD---- 327
+I ++ + P KDY+ +I P + I Q + Y + + +
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 328 ---------VARFISP------YHHSKHPISEMTALLQSVGFNIHHCDSNTS------SY 366
A I+ + S + + +L +G + NTS
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVS---VRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 367 SYR----------TVSDLRQA-----LTSVNPFL---ERIPSTL---QDDFMNDCIDVV- 404
S ++S+L Q + N L +++ +L + VV
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL------VVS 380
Query: 405 --------FNGNLREVF--PLDEQTVRFNYTQIIVFARK 433
N LR+ +Q+ R +++ RK
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQS-RIPFSE-----RK 413
Score = 35.8 bits (82), Expect = 0.033
Identities = 47/296 (15%), Positives = 83/296 (28%), Gaps = 112/296 (37%)
Query: 69 SPNMIKH-------AKN------HHTNPKLEFVVANIADQNLESIFL----AKFNKI--- 108
M A++ +H F + +I N ++ + K +I
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 109 FSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT 168
+S + D + I+ + E + LS T++TQ
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEI---NEHSTSYTFRSEK----GLLSA----TQFTQP-- 1734
Query: 169 YRCLLFTG-----VIQVQGDITKEST--------------IKEIFSHFDDEKVDLVVFDG 209
L ++ +G I ++T + ++ S + V++V + G
Sbjct: 1735 --ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS-IESL-VEVVFYRG 1790
Query: 210 ------APDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSRNVVCLETKFQ 263
P DE + + A+N PG V F E Q
Sbjct: 1791 MTMQVAVPR-------DELGRSNYGMIAIN-------PGR--VAASF------SQEA-LQ 1827
Query: 264 IFFENVSIAKPKSSRNSSIESFIVCQNYRPPKDYVPTIMNPFTEITGAQWSDYVSS 319
E V +E IV NY N + Q YV++
Sbjct: 1828 YVVERVG-----KRTGWLVE--IV--NY-----------N----VENQQ---YVAA 1856
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 1e-11
Identities = 80/530 (15%), Positives = 144/530 (27%), Gaps = 171/530 (32%)
Query: 14 QQLDAAKLLSQYIDQFK--WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPN 71
+Q + + YI+Q + DN+ NV+ L + L+ L + N
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVF-----AKYNVSRLQPYLKLRQ---ALLELRPAKN 152
Query: 72 MIKHA-----KNHHTNPKLEFVVANIA--DQNLESIFLAKFNKIFSFYCLHWV------- 117
++ K VA ++ KIF W+
Sbjct: 153 VLIDGVLGSGKT---------WVALDVCLSYKVQCKM---DFKIF------WLNLKNCNS 194
Query: 118 -QDQRQAISNIYNLLMPGGEVLL--LLNAFNPIYDLYEKLSRKPKWTEYTQVRTYRCLLF 174
+ + + + + P N I+ + +L R K Y CLL
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-----NCLL- 248
Query: 175 TGVIQVQGDITKESTIKEIFSHFDDE-KV-----DLVVFDGAPDVTGLH-DLDEHLQGL- 226
V ++ + ++ F+ K+ V D T H LD H L
Sbjct: 249 -----VLLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 227 ------LLIGALNITTFLLKP----GGTFVGKIF------------RSRNV--------- 255
LL+ L+ L I ++V
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 256 -VCLET-----------KFQIFFENVSIAKPKS------SRNSSIESFIV---CQNY--- 291
L + +F + I P + +V Y
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 292 -RPPKDYVPTIMNPFTEITGAQWSDY------VSSLSESNKKDVARFISP---------- 334
+ PK+ +I + + E+ ++Y V + D I P
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 335 -YHHSKHPISEMTALLQSVGFN-------IHHCDS--NTSSYSYRTVSDLR---QALTSV 381
+H E L + V + I H + N S T+ L+ +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 382 NPFLERIPSTLQDDFMNDCIDVVFNGNLREVFPLDEQTVRFNYTQIIVFA 431
+P ER+ + + DF+ +E + YT ++ A
Sbjct: 538 DPKYERLVNAIL-DFLPKI---------------EENLICSKYTDLLRIA 571
Score = 58.3 bits (140), Expect = 3e-09
Identities = 60/429 (13%), Positives = 116/429 (27%), Gaps = 121/429 (28%)
Query: 75 HAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ-RQAISN-----IY 128
H +HH + E +++ S+F F F VQD + +S I
Sbjct: 1 HHHHHHMD--FETGEHQYQYKDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHII 55
Query: 129 NLLMPGGEVLLLL----------------NAFNPIYD-LYEKLSRKPKWTE--YTQVRTY 169
L L Y L + + +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 170 RCLLFTGV-IQVQGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLL 228
R L+ + + ++++ ++ L +L + +L+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL-------------------RQALLELRPA-KNVLI 155
Query: 229 IGALNITTFLLKPGGTFVGKIFRSRNV----VCLETKFQIFFEN----VSIAKPKSSRNS 280
G G+ GK VCL K Q + +++ +S +
Sbjct: 156 DGV----------LGS--GK-----TWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPET 197
Query: 281 SIE-----SFIVCQNYRPPKDYVPTIMNPFTEITGA-----QWSDYVSSL--------SE 322
+E + + N+ D+ I I + Y + L ++
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 323 --------------SNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSY 368
+ K V F+S + + S+ S Y
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-----SMTLTPDEVKSLLLKYLD 312
Query: 369 RTVSDLRQALTSVNPF-LERIPSTLQDDF-MNDCIDVVFNGNLREVF-----PLDEQTVR 421
DL + + + NP L I +++D D V L + L+ R
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 422 FNYTQIIVF 430
+ ++ VF
Sbjct: 373 KMFDRLSVF 381
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 62.6 bits (152), Expect = 2e-11
Identities = 21/138 (15%), Positives = 50/138 (36%), Gaps = 18/138 (13%)
Query: 24 QYI-DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--- 79
+ K ++ V+D+GCG GN+ LL + ++ G+DVS ++ A+
Sbjct: 19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDS---FFEQITGVDVSYRSLEIAQERLDR 75
Query: 80 -----HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA--ISNIYNLLM 132
+ +L+ + + Q+ ++ + + R ++
Sbjct: 76 LRLPRNQWERLQLIQGALTYQDKR---FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ 132
Query: 133 PGGEVLLLLNA-FNPIYD 149
P ++ N +N +
Sbjct: 133 PKIVIVTTPNIEYNVKFA 150
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 62.3 bits (151), Expect = 2e-11
Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--------HTNPKLE 86
+ V+D+GCG GN+ S LL KS ++ G+DVS ++++ AK+ ++
Sbjct: 31 KKVIDLGCGEGNLLSLLLKD---KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRIS 87
Query: 87 FVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA--ISNIYNLLMPGGEVLLLLNA- 143
+++ ++ + ++ + + + R ++ P ++ N
Sbjct: 88 LFQSSLVYRDKR---FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKE 144
Query: 144 FNPIY 148
+N Y
Sbjct: 145 YNFHY 149
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 61.3 bits (149), Expect = 4e-11
Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN 82
S+ ++ K LD+GCG G + L + + D + I + + +
Sbjct: 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLA-----ANGYDVDAWDKNAMSIANVERIKSI 76
Query: 83 PKLEFVVANIADQNLESI-FLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVLL 139
L+ + + D L ++ F +++ I S L +++ + I+N+ PGG
Sbjct: 77 ENLDNLHTRVVD--LNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGG--YN 132
Query: 140 LLNAFNPIYDLYEKLSRKPKWTE 162
L+ A D + + E
Sbjct: 133 LIVAAMDTADYPCTVGFPFAFKE 155
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 62.7 bits (151), Expect = 5e-11
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 23/167 (13%)
Query: 20 KLLSQYIDQFKWTD--NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
L+ +++++ + + +VLD+GCG G K + KLV D++ +K +
Sbjct: 19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGR----INKLVCTDIADVSVKQCQ 74
Query: 78 NHHTN----------PKLEFVVANIADQNLESIFLAK---FNKIFSFYCLHWVQDQ---- 120
+ + EF+ A+ + + L F F+ + H+ +
Sbjct: 75 QRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQA 134
Query: 121 RQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVR 167
+ N L PGG + + E + E V+
Sbjct: 135 DMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVK 181
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 61.3 bits (149), Expect = 5e-11
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 25/135 (18%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--------HTNPKL 85
++ +LD+GCG G ++ +L + G+D++ I+ A+ T K
Sbjct: 31 DDEILDIGCGSGKISLELA-----SKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA 85
Query: 86 EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQR---QAISNIYNLLMPGGEVLLL-- 140
EF V N + + + F+ L V D + + I ++ +L PG + L+
Sbjct: 86 EFKVENASSLSFHD---SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142
Query: 141 ----LNAFNPIYDLY 151
L+
Sbjct: 143 GQNWHLKLYRKRYLH 157
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 61.3 bits (149), Expect = 6e-11
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPK 84
+ K + + VLD+GC G L + ++ ++ G++ P + AK
Sbjct: 25 LLKHIKK-EWKEVLDIGCSSG-----ALGAAIKENGTRVSGIEAFPEAAEQAKEK----- 73
Query: 85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
L+ VV + +F+ + L + D I + + G +L
Sbjct: 74 LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 62.6 bits (151), Expect = 1e-10
Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 18/152 (11%)
Query: 24 QYIDQF-KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--- 79
+Y + + + +++D GCG G++ LL + P S+ ++G+D+SP + A
Sbjct: 711 EYALKHIRESSASTLVDFGCGSGSLLDSLL--DYPTSLQTIIGVDISPKGLARAAKMLHV 768
Query: 80 ------HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA--ISNIYNLL 131
+I + + L + + +++ + + +L
Sbjct: 769 KLNKEACNVKSATLYDGSILEFDSR---LHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF 825
Query: 132 MPGGEVLLLLNA-FNPIYDLYEKLSRKPKWTE 162
P ++ N FN I +++ +E
Sbjct: 826 HPKLLIVSTPNYEFNTILQRSTPETQEENNSE 857
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 58.7 bits (142), Expect = 2e-10
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 15/143 (10%)
Query: 6 LYETNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVG 65
+ + + + L +Q +L + G G L +L V
Sbjct: 5 RFSQSEYVYGTEPNDFLVSVANQIP---QGKILCLAEGEGRNA--CFLASLGYEV---TA 56
Query: 66 LDVSPNMIKHAKNH--HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQA 123
+D S + AK K+ V +N+AD ++ + + I S +C ++Q
Sbjct: 57 VDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA---DAWEGIVSIFCHLPSSLRQQL 113
Query: 124 ISNIYNLLMPGGEVLLLLNAFNP 146
+Y L PGG + +L F P
Sbjct: 114 YPKVYQGLKPGG--VFILEGFAP 134
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 59.5 bits (144), Expect = 3e-10
Identities = 19/112 (16%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK----HAKNHHTNPKLEF 87
TD+ + D+GCG G + L + + G+D+ P+ I+ +A + +++
Sbjct: 45 TDDAKIADIGCGTG-GQTLFLADYVKGQI---TGIDLFPDFIEIFNENAVKANCADRVKG 100
Query: 88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+ ++ + ++ + + I+S ++ + +R ++ L GG + +
Sbjct: 101 ITGSMDNLPFQN---EELDLIWSEGAIYNIGFER-GMNEWSKYLKKGGFIAV 148
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 59.3 bits (143), Expect = 3e-10
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 12/131 (9%)
Query: 21 LLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHH 80
L + T LD G G G +T +LLLP L + V +D++ + + AK +
Sbjct: 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLP-LFREVD---MVDITEDFLVQAKTYL 122
Query: 81 TNPKL---EFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQ--RQAISNIYNLLMPGG 135
+ + D E ++ I+ + + + DQ + + L P G
Sbjct: 123 GEEGKRVRNYFCCGLQDFTPEP---DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNG 179
Query: 136 EVLLLLNAFNP 146
+++ N
Sbjct: 180 IIVIKDNMAQE 190
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 58.5 bits (141), Expect = 5e-10
Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 28/137 (20%)
Query: 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
LL + + +L +GCG ++ +L L + +D S ++ +
Sbjct: 34 ALLEPELRP-----EDRILVLGCGNSALSYELFL----GGFPNVTSVDYSSVVVAAMQAC 84
Query: 80 HTN-PKLEFVVANIADQNLESIFLAKFNKIFSFYCLH---------------WVQDQRQA 123
+ + P+L + ++ + S A F+ + L V Q
Sbjct: 85 YAHVPQLRWETMDVRKLDFPS---ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQV 141
Query: 124 ISNIYNLLMPGGEVLLL 140
+S + +L+PGG + +
Sbjct: 142 LSEVSRVLVPGGRFISM 158
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 58.7 bits (142), Expect = 5e-10
Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEF 87
T+ + D+GCG G + +L ++ V GLD I ++A+ ++
Sbjct: 45 TEKSLIADIGCGTG-GQTMVLAGHVTGQV---TGLDFLSGFIDIFNRNARQSGLQNRVTG 100
Query: 88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+V ++ D + + + I+S ++ + +R ++ L GG + +
Sbjct: 101 IVGSMDDLPFRN---EELDLIWSEGAIYNIGFER-GLNEWRKYLKKGGYLAV 148
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 58.6 bits (142), Expect = 7e-10
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT----NPKLEF 87
+ VLDVGCG G +L V++ G+ +S + A T ++ F
Sbjct: 60 RSGDRVLDVGCGIGKPAVRL----ATARDVRVTGISISRPQVNQANARATAAGLANRVTF 115
Query: 88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
A+ D E A F+ +++ LH + D+ +A+ + +L PGG V +
Sbjct: 116 SYADAMDLPFED---ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 57.3 bits (138), Expect = 2e-09
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----------KHAKNHHTNPK 84
E +L++GCG G+++ +L + S + G+D++ H +
Sbjct: 45 EKILEIGCGQGDLS--AVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR 102
Query: 85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLL 140
L +L I F+++ + L + N+ V +
Sbjct: 103 LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVA 158
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 56.8 bits (137), Expect = 2e-09
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
L +YI FK VLD+GCG G L + ++ +G+D++ +MIK +
Sbjct: 30 ARLRRYIPYFK--GCRRVLDIGCGRGE-----FLELCKEEGIESIGVDINEDMIKFCEG- 81
Query: 80 HTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL-H-WVQDQRQAISNIYNLLMPGGEV 137
K V ++ A + L+S+ + + + + H + + +S Y+ + +
Sbjct: 82 ----KFNVVKSD-AIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYI 136
Query: 138 LL 139
++
Sbjct: 137 VI 138
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 56.8 bits (137), Expect = 3e-09
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL----EFVV 89
LD+G G G L+ K V + L+++P K + ++ L
Sbjct: 83 QAKGLDLGAGYGGAARFLVR----KFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+ + E ++ I+S D+ + +L P G + +
Sbjct: 139 GSFLEIPCED---NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI 185
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 56.3 bits (136), Expect = 4e-09
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
L+A K + + + +N VLD+G G G + + K G+D+ N++
Sbjct: 40 GLEATKKI---LSDIELNENSKVLDIGSGLG--GGCMYINE--KYGAHTHGIDICSNIVN 92
Query: 75 HA-KNHHTNPKLEFVVANIADQNLESIFLAKFNKIFS---FYCLHWVQDQRQAISNIYNL 130
A + N K+ F +I + F+ I+S L ++++ + Y
Sbjct: 93 MANERVSGNNKIIFEANDILTKEFPE---NNFDLIYSRDAILALS-LENKNKLFQKCYKW 148
Query: 131 LMPGGEVLL 139
L P G +L+
Sbjct: 149 LKPTGTLLI 157
Score = 27.4 bits (61), Expect = 8.2
Identities = 11/100 (11%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 314 SDYVSSLSESNKKDVARFISPYHHSKHPISEMTALLQSVGFNIHHCDSNTSSYSYRTVSD 373
+DY ++ E+ + ++ ++ + E +L + F + ++ +
Sbjct: 158 TDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEVE 217
Query: 374 LRQALTSVNPFLERIPSTLQD---DFMNDCIDVVFNGNLR 410
+ + FL+ D + I R
Sbjct: 218 HKYLHENKEEFLKLFSEKKFISLDDGWSRKIKDSKRKMQR 257
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 53.3 bits (128), Expect = 3e-08
Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)
Query: 30 KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVV 89
+ ++L++G G L + + ++ S I HA+ + ++
Sbjct: 39 PFFRPGNLLELGSFKG-----DFTSRLQEHFNDITCVEASEEAISHAQG-RLKDGITYIH 92
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIY-NLLMPGGEVLL--------- 139
+ D L +++ I + L + D + I + L GG + L
Sbjct: 93 SRFEDAQLPR----RYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 148
Query: 140 -LLNAFNPIYDLYEKLSRKPKWTEY 163
+ I ++ +
Sbjct: 149 RQIAVKMGIISHNSAVTEAEFAHGH 173
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 53.2 bits (127), Expect = 5e-08
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 23/137 (16%)
Query: 21 LLSQYIDQFKWTDNE--SVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
L+S Y + D+ VL + G G K + LV D + I
Sbjct: 34 LISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGE----IALLVATDPDADAIARGNE 89
Query: 79 HHTNPKL-------------EFVVANIADQNLESIFL-AKFNKIFSFYCLHWV---QDQR 121
+ E + ++ ++ +F KFN I + +H+ +
Sbjct: 90 RYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYA 149
Query: 122 QAISNIYNLLMPGGEVL 138
++N+ L GG+VL
Sbjct: 150 TVMNNLSELTASGGKVL 166
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 51.0 bits (122), Expect = 1e-07
Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 20/134 (14%)
Query: 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
+ L++ + D V+D G GN T+ L K+ DV +
Sbjct: 12 SHDFLAEVL-----DDESIVVDATMGNGNDTAFLA-----GLSKKVYAFDVQEQALGKTS 61
Query: 78 NH---HTNPKLEFVVA---NIADQNLESIFLAKFNKIF----SFYCLHWVQDQRQAISNI 127
E ++ N+ E I A FN + + +AI I
Sbjct: 62 QRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKI 121
Query: 128 YNLLMPGGEVLLLL 141
+ L GG + +++
Sbjct: 122 LDRLEVGGRLAIMI 135
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 51.1 bits (122), Expect = 1e-07
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVV 89
++V+D CG GN T L +L ++ G D+ I + + + ++ +
Sbjct: 23 GDTVVDATCGNGNDT--AFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80
Query: 90 ANIADQNL---ESIFLAKFNKIFSFYCLH----WVQDQRQAISNIYNLLMPGGEVLLLL 141
+ + + FN + H + QA+S LL+ GG + +++
Sbjct: 81 DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 51.7 bits (123), Expect = 2e-07
Identities = 22/162 (13%), Positives = 58/162 (35%), Gaps = 21/162 (12%)
Query: 1 MHKAT-LYETNNSMQQLDAAKLLSQY-------IDQFKWTDNESVLDVGCGPGNVTSKLL 52
M KA + E+++ + L + +Y ++ E + +G GP +T +L
Sbjct: 82 MEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTG-IL 140
Query: 53 LPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFY 112
L ++ V +++ P++ + ++ L N+ + I +F+ +
Sbjct: 141 LSHVYGMRV--NVVEIEPDIAELSRKV--IEGLGVDGVNVITGDETVIDGLEFDVLMV-- 194
Query: 113 CLHWVQDQRQAISNIYNLLMPGGEVLL-----LLNAFNPIYD 149
+ +R+ NI+ + ++ +
Sbjct: 195 -AALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVS 235
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 50.7 bits (121), Expect = 3e-07
Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 15/132 (11%)
Query: 23 SQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH--H 80
+D K VLD+GCG G + L L L V D + N I
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNS--LYLSLLGYDV---TSWDHNENSIAFLNETKEK 164
Query: 81 TNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQR--QAISNIYNLLMPGGEVL 138
N + + +I N++ ++ I S ++ +R I N+ GG
Sbjct: 165 ENLNISTALYDINAANIQ----ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGG--Y 218
Query: 139 LLLNAFNPIYDL 150
L+ A D+
Sbjct: 219 NLIVAAMSTDDV 230
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 48.8 bits (115), Expect = 1e-06
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 22 LSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT 81
+ + T + +V D+GC G T N+ + VK++G+D S M++ + H
Sbjct: 47 AIGMLAERFVTADSNVYDLGCSRGAAT-LSARRNINQPNVKIIGIDNSQPMVERCRQHIA 105
Query: 82 NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHW--VQDQRQAISNIYNLLMPGG 135
E V + + + + + L + +D+ ++ IY L P G
Sbjct: 106 AYHSEIPVEILCNDIRHVEI-KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG 160
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 47.3 bits (112), Expect = 2e-06
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 17 DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA 76
A L+ +D L GCG G+ + + + + V VGLD+S + + A
Sbjct: 51 RATPLIVHLVDTSSLPLG-RALVPGCGGGHDV--VAMASPERFV---VGLDISESALAKA 104
Query: 77 K----NHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNL 130
+ FV ++ F+ IF + + + + ++Y L
Sbjct: 105 NETYGSSPKAEYFSFVKEDVFTWRPT----ELFDLIFDYVFFCAIEPEMRPAWAKSMYEL 160
Query: 131 LMPGGEVLLLLNAFNP 146
L P G L+ +
Sbjct: 161 LKPDG--ELITLMYPI 174
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 47.6 bits (112), Expect = 3e-06
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVA 90
W VLD+GC G++T + P + VGLD+ +I A+ + + E +
Sbjct: 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRM---VGLDIDSRLIHSARQNIRHYLSEELRL 100
Query: 91 NIAD 94
Sbjct: 101 PPQT 104
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 45.5 bits (108), Expect = 1e-05
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 12/110 (10%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH----HTNPKLEFVV 89
+LD+G G G ++L + G+D+S AK + ++ F+
Sbjct: 37 GTRILDLGSGSG----EMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 92
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLL 139
+ A K + A + L PGG +L+
Sbjct: 93 NDAAGYVAN----EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI 138
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 45.7 bits (108), Expect = 2e-05
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 181 QGDITKESTIKEIFSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLK 240
+I K +F E D ++ D + ++ + + ++ N +
Sbjct: 128 GWNIVKFKDKSNVF-TMPTEPSDTLLCDIGESSSN-PLVERD-RTMKVLE--NFERWKHV 182
Query: 241 PGGTFVGKIFR--SRNVVCLETKFQIFFENVSIAKPKSSRNSSIESFIV 287
F K+ +V+ + Q+ F + P SRNS+ E + +
Sbjct: 183 NTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEMYYI 230
Score = 29.9 bits (67), Expect = 1.6
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 18 AAKLLSQYIDQFKWTDNESVLDVGCGPG 45
AAK+ ++ VLD+GCG G
Sbjct: 67 AAKIR-WLHERGYLRITGRVLDLGCGRG 93
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 44.7 bits (106), Expect = 3e-05
Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 12 SMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDVS 69
+ Q + + + +V+D+ G G +++L P L D+
Sbjct: 162 RLSQPMVDVVS----ELGVFARARTVIDLAGGHGTYLAQVLRRHPQL-----TGQIWDL- 211
Query: 70 PNMIKHAKNHHTNPKL----EFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQRQAI 124
P A+ L EF N+ D + + CLH + + + +
Sbjct: 212 PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE--GGAADVVMLNDCLHYFDAREAREV 269
Query: 125 -SNIYNLLMPGGEVLLL 140
+ L+ PGG +L+L
Sbjct: 270 IGHAAGLVKPGGALLIL 286
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 43.6 bits (102), Expect = 3e-05
Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 24/149 (16%)
Query: 15 QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK 74
Q + K L QY VL CG S L +VG ++S ++
Sbjct: 4 QSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-----HVVGAELSEAAVE 58
Query: 75 HAKN---------------HHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQD 119
+ P +E + + + + +
Sbjct: 59 RYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR--DIGHCAAFYDRAAMIALPA 116
Query: 120 --QRQAISNIYNLLMPGGEVLLLLNAFNP 146
+ + + ++ L+ LL+ ++
Sbjct: 117 DMRERYVQHLEALMPQACSGLLITLEYDQ 145
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 44.3 bits (104), Expect = 4e-05
Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 19/141 (13%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVVANI 92
+L+VG G GN++S +L K L ++ + +K A + + ++I
Sbjct: 114 ILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 171
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYE 152
AD + ++ A + + D + I +++ PG L F+
Sbjct: 172 ADFISDQMYDA---------VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVL 222
Query: 153 KLSRKPKWTEYTQVRTYRCLL 173
L + T +
Sbjct: 223 SL-SASGMHH---LETVELMK 239
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 44.3 bits (105), Expect = 5e-05
Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 21/141 (14%)
Query: 10 NNSMQQL--DAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVG 65
+M + + A+L++Q ++ + VLD+ G + PN ++ G
Sbjct: 141 AKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNA-----EIFG 194
Query: 66 LDVSPNMIKHAKNHHTNPKL----EFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQ 120
+D ++++ AK + + + + E + ++ + LH +
Sbjct: 195 VDW-ASVLEVAKENARIQGVASRYHTIAGSA----FEVDYGNDYDLVLLPNFLHHFDVAT 249
Query: 121 RQAI-SNIYNLLMPGGEVLLL 140
+ + I L G+V++
Sbjct: 250 CEQLLRKIKTALAVEGKVIVF 270
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 43.1 bits (102), Expect = 5e-05
Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 31/158 (19%)
Query: 12 SMQQLD-AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP 70
S ++D K+L ++ ++ +LD+GCG G + L V D++
Sbjct: 33 SYGKVDKGTKIL---VENVVVDKDDDILDLGCGYGVIGIALA-----DEVKSTTMADINR 84
Query: 71 NMIKHAK-----NHHTNPKLEFVVANIADQNLESIFLAKFNKIFS---FYCLHWVQDQRQ 122
IK AK N+ N + V +++ E++ K+NKI + ++
Sbjct: 85 RAIKLAKENIKLNNLDNYDIRVVHSDL----YENVKDRKYNKIITNPPI---R---AGKE 134
Query: 123 AISNI----YNLLMPGGEVLLLLNAFNPIYDLYEKLSR 156
+ I LL GE+ +++ L + +
Sbjct: 135 VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD 172
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 42.5 bits (100), Expect = 9e-05
Identities = 19/143 (13%), Positives = 47/143 (32%), Gaps = 19/143 (13%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH----AKNHHTNPKLEF 87
E + D+G G G+V+ + L + + ++ + I++ + +P++
Sbjct: 54 RRGELLWDIGGGSGSVSVEWCLAGG-----RAITIEPRADRIENIQKNIDTYGLSPRMRA 108
Query: 88 VVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI 147
V A L L +F + ++ L PG ++
Sbjct: 109 VQGT-APAALAD--LPLPEAVF-----IGGGGSQALYDRLWEWLAPGTRIVANAVTLESE 160
Query: 148 YDLYEKLSRKPKWTEYTQVRTYR 170
L + +R + ++ +
Sbjct: 161 TLLTQLHARHG--GQLLRIDIAQ 181
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 42.3 bits (99), Expect = 1e-04
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
+ +++ G G G +T L L N+ ++V ++ + K A + + V
Sbjct: 95 DFIVEAGVGSGALT--LFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK 152
Query: 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154
E I + + + + + + L PGG + N + L+EKL
Sbjct: 153 DIYEGIEEENVDHVILD-----LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKL 207
Query: 155 SRKPKWTEYTQVRTYRCLL 173
+ + RT L+
Sbjct: 208 REFKD--YFMKPRTINVLV 224
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 42.0 bits (99), Expect = 2e-04
Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 23/137 (16%)
Query: 12 SMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDVS 69
+ L Y W+ VLDVG G G + + + L P+L + +++
Sbjct: 165 CDEDLAYEAPADAY----DWSAVRHVLDVGGGNGGMLAAIALRAPHL-----RGTLVEL- 214
Query: 70 PNMIKHAKNHHTN----PKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQRQAI 124
+ A+ + ++ + + + + + + L W + I
Sbjct: 215 AGPAERARRRFADAGLADRVTVAEGDF----FKPL-PVTADVVLLSFVLLNWSDEDALTI 269
Query: 125 -SNIYNLLMPGGEVLLL 140
L PGG +L+L
Sbjct: 270 LRGCVRALEPGGRLLVL 286
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 40.8 bits (95), Expect = 3e-04
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 19/171 (11%)
Query: 9 TNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDV 68
+Q+ A+ +Q + ++ VLDVG G G K+ N P +V V LD
Sbjct: 8 VGKRVQEFSDAEF-----EQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLV--VALDA 59
Query: 69 SPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCL--------HWVQDQ 120
+ ++ + + N+ + L + + + L +
Sbjct: 60 DKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHVLMPWGSLLRGVLGSS 119
Query: 121 RQAISNIYNLLMPGGEVLLLLNAFNPIYDLY-EKLSRKPKWTEYTQVRTYR 170
+ + + + PG L+ LN + ++ P+ T +
Sbjct: 120 PEMLRGMAAVCRPGASFLVALN--LHAWRPSVPEVGEHPEPTPDSADEWLA 168
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 41.2 bits (97), Expect = 5e-04
Identities = 14/138 (10%), Positives = 50/138 (36%), Gaps = 19/138 (13%)
Query: 11 NSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDV 68
+ + + + + +LD+G G ++ + + ++ +D+
Sbjct: 160 DHFYSDQSFGKALEIVF---SHHPKRLLDIGGNTGKWATQCVQYNKEV-----EVTIVDL 211
Query: 69 SPNMIKHAKNHHTNPKL----EFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQRQA 123
P ++ + AN+ D+++ F F+ ++ L + +++ +
Sbjct: 212 -PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP--FPTGFDAVWMSQFLDCFSEEEVIS 268
Query: 124 I-SNIYNLLMPGGEVLLL 140
I + + + +V ++
Sbjct: 269 ILTRVAQSIGKDSKVYIM 286
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 40.0 bits (94), Expect = 5e-04
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 15/141 (10%)
Query: 34 NESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH----AKNHHTNPKLEFVV 89
N+ +DVGCG G VT +L ++ +D +P I + H + +
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVR-----RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYD 149
+ A + L + + + ++ + I + L PGG +++ ++
Sbjct: 89 GD-APEALCK--IPDIDIAVVGGSGGEL---QEILRIIKDKLKPGGRIIVTAILLETKFE 142
Query: 150 LYEKLSRKPKWTEYTQVRTYR 170
E L T++ R
Sbjct: 143 AMECLRDLGFDVNITELNIAR 163
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 40.5 bits (95), Expect = 7e-04
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 29/140 (20%)
Query: 12 SMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDVS 69
S + LL + K + ++DVG G G++++ +L P L L++
Sbjct: 173 SNAKFAIQLLLEEA----KLDGVKKMIDVGGGIGDISAAMLKHFPEL-----DSTILNL- 222
Query: 70 PNMIKHAKNHHTNPKL----EFVVANIADQNLES---IFLAKFNKIFSFYCLH-WVQDQR 121
P I + + + +I ++ + L+ +
Sbjct: 223 PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC--------RILYSANEQLS 274
Query: 122 QAI-SNIYNLLMPGGEVLLL 140
+ ++ + GG +L+L
Sbjct: 275 TIMCKKAFDAMRSGGRLLIL 294
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 39.4 bits (91), Expect = 0.001
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 17/119 (14%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNM----IKHAKNHHTN---PKL 85
+ +D+G G G KL + + + +G+D K + +
Sbjct: 24 FDRVHIDLGTGDGRNIYKLAIND-QNTFY--IGIDPVKENLFDISKKIIKKPSKGGLSNV 80
Query: 86 EFVVANIADQNLESIFLAKFNKIFSFYC-----LHWVQDQRQAISNIYNLLMPGGEVLL 139
FV+A ++L + I + + ++ R +SN+ +L
Sbjct: 81 VFVIAAA--ESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 38.5 bits (89), Expect = 0.002
Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 11/144 (7%)
Query: 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
A + +DQ VL +G G S + ++ + ++ S + N
Sbjct: 63 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVS--DIVGPDGLVYAVEFSHRSGRDLIN 120
Query: 79 HHTN-PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEV 137
+ V+ + + + +A + IF+ + R N + L GG
Sbjct: 121 LAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA--DVAQPDQTRIVALNAHTFLRNGGHF 178
Query: 138 LLLLNAFNPIYDLYEKLSRKPKWT 161
++ I + +
Sbjct: 179 VI------SIKANCIDSTASAEAV 196
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 39.1 bits (92), Expect = 0.003
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 11 NSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP 70
N+ K++++ ++ + VLD+ CG GN T LP L +VG++ P
Sbjct: 267 NAGV---NQKMVARALEWLDVQPEDRVLDLFCGMGNFT----LP-LATQAASVVGVEGVP 318
Query: 71 NMIKHAK-----NHHTNPKLEFVVANIADQ-NLESIFLAKFNKI 108
+++ + N N + F N+ + + F+K+
Sbjct: 319 ALVEKGQQNARLNGLQN--VTFYHENLEEDVTKQPWAKNGFDKV 360
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 38.7 bits (90), Expect = 0.003
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 22/155 (14%)
Query: 12 SMQQLD-AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP 70
S LD A+ Q++ + ++D+GCG G + LL N K+V +D SP
Sbjct: 203 SRTGLDIGARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKN---PQAKVVFVDESP 256
Query: 71 NMIKHAK-----NHHTNPK-LEFVVANIADQNLESIFLAKFNKIFS---FYCLHWVQDQ- 120
+ ++ N EF++ N L + +FN + F+ H + D
Sbjct: 257 MAVASSRLNVETNMPEALDRCEFMINNA----LSGVEPFRFNAVLCNPPFHQQHALTDNV 312
Query: 121 -RQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154
+ + L GE+ ++ N + +K+
Sbjct: 313 AWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI 347
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 38.2 bits (88), Expect = 0.003
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 13/140 (9%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK---NHHTNPKLEFVVANIA 93
VL+ G G G +T LL P +++ + + +HA+ + + ++
Sbjct: 103 VLEAGAGSGALTLSLLRAVGPAG--QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 160
Query: 94 DQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEK 153
D + ++ W + + + LL+ GG +++ + + + E
Sbjct: 161 DLADSELPDGSVDRAVLDMLAPW-----EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEA 215
Query: 154 LSRKPKWTEYTQVRTYRCLL 173
L K WTE R + L
Sbjct: 216 LRAKQCWTE---PRAWETLQ 232
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 37.7 bits (87), Expect = 0.003
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 27/141 (19%)
Query: 19 AKLLSQYIDQFKWTDNESV-LDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
+ + + + V D GCG + S + + D
Sbjct: 52 LQPVDRIARDLRQRPASLVVADFGCGDCRLASSI--------RNPVHCFD---------- 93
Query: 78 NHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEV 137
+ V ++A LE + L + R + +L PGG +
Sbjct: 94 --LASLDPRVTVCDMAQVPLED---ESVDVAVFCLSLMGT-NIRDFLEEANRVLKPGGLL 147
Query: 138 LL--LLNAFNPIYDLYEKLSR 156
+ + + F + +++
Sbjct: 148 KVAEVSSRFEDVRTFLRAVTK 168
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 38.4 bits (90), Expect = 0.004
Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 40/149 (26%)
Query: 10 NNSM---QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLV 64
+ M +LD + ++Y W V+DVG G G + S LL +L
Sbjct: 147 DTLMSHHLELDYTGIAAKY----DWAALGHVVDVGGGSGGLLSALLTAHEDL-----SGT 197
Query: 65 GLDVSPNMIKHAKNHHTNPKL----EFVVANI-------ADQNLESIFLAKFNKIFSFYC 113
LD+ A + L + VV + A L+
Sbjct: 198 VLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAG----GYVLS--------AV 244
Query: 114 LH-WVQDQRQAI-SNIYNLLMPGGEVLLL 140
LH W AI GG VL++
Sbjct: 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVI 273
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 38.1 bits (89), Expect = 0.004
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 23/136 (16%)
Query: 12 SMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDVS 69
Q + + Y WT+ VLDVG G G + + P++ L++
Sbjct: 166 CDQDVAFDAPAAAY----DWTNVRHVLDVGGGKGGFAAAIARRAPHV-----SATVLEM- 215
Query: 70 PNMIKHAKNHHTN----PKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQRQAI 124
+ A+++ + +++ V + E + K + I + L W I
Sbjct: 216 AGTVDTARSYLKDEGLSDRVDVVEGDF----FEPL-PRKADAIILSFVLLNWPDHDAVRI 270
Query: 125 -SNIYNLLMPGGEVLL 139
+ L PGG +L+
Sbjct: 271 LTRCAEALEPGGRILI 286
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 37.7 bits (88), Expect = 0.005
Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 26/142 (18%)
Query: 10 NNSM---QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLV 64
N +M +A ++ + Y ++ + +D+G G G++ + +L P L +
Sbjct: 180 NRAMGSVSLTEAGQVAAAY----DFSGAATAVDIGGGRGSLMAAVLDAFPGL-----RGT 230
Query: 65 GLDVSPNMIKHAKNHHTN----PKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQD 119
L+ P + + A+ T + E + + E+I + + LH W D
Sbjct: 231 LLER-PPVAEEARELLTGRGLADRCEILPGDF----FETI-PDGADVYLIKHVLHDWDDD 284
Query: 120 QRQAI-SNIYNLLMPGGEVLLL 140
I I + P +L++
Sbjct: 285 DVVRILRRIATAMKPDSRLLVI 306
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 37.0 bits (85), Expect = 0.007
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 5/119 (4%)
Query: 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTN-PK 84
+ VL +G G S + G++ SP +++ P
Sbjct: 69 LKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKA--YGVEFSPRVVRELLLVAQRRPN 126
Query: 85 LEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNA 143
+ ++A+ + + ++ + AI N L G++LL++ A
Sbjct: 127 IFPLLADARFPQSYKSVVENVDVLYV--DIAQPDQTDIAIYNAKFFLKVNGDMLLVIKA 183
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 36.5 bits (84), Expect = 0.011
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 11/137 (8%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIADQN 96
++D G G G + + L K+ + K A+++ T L V
Sbjct: 116 IIDTGVGSGAMCAVLARAVGSSG--KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI 173
Query: 97 LESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSR 156
E + +F W I + L GG + N + + +KL +
Sbjct: 174 SEGFDEKDVDALFLDVPDPW-----NYIDKCWEALKGGGRFATVCPTTNQVQETLKKL-Q 227
Query: 157 KPKWTEYTQVRTYRCLL 173
+ + + + L
Sbjct: 228 ELPFIR---IEVWESLF 241
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 36.5 bits (84), Expect = 0.015
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 12 SMQQLD-AAKLLSQYIDQF---KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLD 67
S ++D A+ LL + + + + VLD+G G G +T L ++VG++
Sbjct: 208 SAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-----AEVVGVE 262
Query: 68 VSPNMIKHAK-NHHTN-PKLEFVVANIADQNLESIFLAKFNKIFS---FYCLHWVQDQ-- 120
+ + N K + + +++ + E A+F+ I + F+ V
Sbjct: 263 DDLASVLSLQKGLEANALKAQALHSDVDEALTEE---ARFDIIVTNPPFHVGGAVILDVA 319
Query: 121 RQAISNIYNLLMPGGEVLLLLNAF 144
+ ++ L PGG L+ N F
Sbjct: 320 QAFVNVAAARLRPGGVFFLVSNPF 343
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine
methyltransferase, structural genomics, PSI, protein
structure initiative; HET: SAH; 1.25A {Mus musculus}
PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Length = 252
Score = 35.6 bits (81), Expect = 0.022
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 30/149 (20%)
Query: 21 LLSQYIDQF-KWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN- 78
LL +++D F K V CG +VG+++S I+
Sbjct: 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-----TVVGVEISEIGIREFFAE 109
Query: 79 -------------------HHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQ- 118
++ + +I D + KF++I+ L +
Sbjct: 110 QNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA--NIGKFDRIWDRGALVAINP 167
Query: 119 -DQRQAISNIYNLLMPGGEVLLLLNAFNP 146
D + I +LL + L+ + +++P
Sbjct: 168 GDHDRYADIILSLLRKEFQYLVAVLSYDP 196
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 35.4 bits (82), Expect = 0.028
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 19/151 (12%)
Query: 12 SMQQLD-AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSP 70
S LD ++LL + VLDVGCG G ++ + ++L DVS
Sbjct: 177 SRDGLDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSVAFARHS---PKIRLTLCDVSA 230
Query: 71 NMIKHAKN--HHTNPKLEFVVANIADQNLESIFLAKFNKIFS---FYCLHWVQDQ--RQA 123
++ ++ + E +N+ + +F+ I S F+ +
Sbjct: 231 PAVEASRATLAANGVEGEVFASNVFSE-----VKGRFDMIISNPPFHDGMQTSLDAAQTL 285
Query: 124 ISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL 154
I L GGE+ ++ NAF P D+ ++
Sbjct: 286 IRGAVRHLNSGGELRIVANAFLPYPDVLDET 316
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 35.4 bits (82), Expect = 0.028
Identities = 24/150 (16%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 9 TNNSMQQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDV 68
++ M++ A L ++ + ++++GC G +L + ++ V+ +G +
Sbjct: 84 GSSVMREH-FAMLARDFLATELTGPDPFIVEIGCNDGI-----MLRTIQEAGVRHLGFEP 137
Query: 69 SPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIY 128
S + A+ + +F AD + N I++ L + + + +
Sbjct: 138 SSGVAAKAREKGIRVRTDFFEKATADDVRRTEG--PANVIYAANTLCHIPYVQSVLEGVD 195
Query: 129 NLLMPGGEV---------LLLLNAFNPIYD 149
LL P G ++ +F+ I+D
Sbjct: 196 ALLAPDGVFVFEDPYLGDIVAKTSFDQIFD 225
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 34.9 bits (80), Expect = 0.039
Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 27 DQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLE 86
+K + VLD+ G G ++ P+ + L+ ++ K L+
Sbjct: 52 KTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR---QYSLLEKRSSLYKFLNAKFEGSPLQ 108
Query: 87 FVVANIAD-QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNI-YN 129
+ + D ++ + + + D+ ++N+
Sbjct: 109 ILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGE 153
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 34.9 bits (81), Expect = 0.046
Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 26/141 (18%)
Query: 10 NNSMQQ--LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVG 65
+M+ L ++ + + S +DVG G G +T +L P+ + V
Sbjct: 147 LLAMKASNLAFHEIPRLLDFRGR-----SFVDVGGGSGELTKAILQAEPSA-----RGVM 196
Query: 66 LDVSPNMIKHAKNHHT----NPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQ 120
LD + A+++ + ++ V ++ L+ + + + + +
Sbjct: 197 LDR-EGSLGVARDNLSSLLAGERVSLVGGDM----LQEV-PSNGDIYLLSRIIGDLDEAA 250
Query: 121 RQAI-SNIYNLLMPGGEVLLL 140
+ N + G V+++
Sbjct: 251 SLRLLGNCREAMAGDGRVVVI 271
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 34.0 bits (78), Expect = 0.049
Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 18/144 (12%)
Query: 32 TDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVGLDVSPNMIKHAKNHHTN---PKLE 86
+E++ D+G G G++ + L P V ++S + ++ N
Sbjct: 24 KPHETLWDIGGGSGSIAIEWLRSTPQT-----TAVCFEISEERRERILSNAINLGVSDRI 78
Query: 87 FVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNP 146
V + + + IF L + + L GG ++
Sbjct: 79 AVQQGAPRA-FDDVP-DNPDVIFIGGGLT----APGVFAAAWKRLPVGGRLVANAVTVES 132
Query: 147 IYDLYEKLSRKPKWTEYTQVRTYR 170
L+ + +
Sbjct: 133 EQMLWALRKQFG--GTISSFAISH 154
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 33.1 bits (75), Expect = 0.12
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 12/130 (9%)
Query: 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK--- 74
A +++ + F +SVL +G G S + + + G++ SP +++
Sbjct: 59 GAAIMNG-LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKI--FGIEFSPRVLRELV 115
Query: 75 HAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYC-LHWVQDQRQAISNIYNLLMP 133
N +V + D + A K+ + + + I N L
Sbjct: 116 PIVEERRN-----IVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKR 170
Query: 134 GGEVLLLLNA 143
GG ++ + +
Sbjct: 171 GGYGMIAVKS 180
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 33.1 bits (75), Expect = 0.15
Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 35/161 (21%)
Query: 12 SMQQLDAAKLLSQY----------IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVV 61
S+ A + L + + + VL+ C G +
Sbjct: 8 SLPSNSAPRSLGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLR--AFREAHGTAY 65
Query: 62 KLVGLDVSPNMIKHAKNHH----------TNPKLEFVVAN---IADQNLESIFLAKFNKI 108
+ VG+++ P + + ++ N + F +
Sbjct: 66 RFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAV 125
Query: 109 FSFYCLHWVQDQRQAISNIY--------NLLMPGGEVLLLL 141
Y + + + N+Y LL PGG ++ ++
Sbjct: 126 KDLYKKAFSTWKGKY--NLYGAFLEKAVRLLKPGGVLVFVV 164
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 32.9 bits (75), Expect = 0.17
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 16/127 (12%)
Query: 37 VLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKL----EFVVANI 92
++D GCG G + ++ G+ +S ++ V N+
Sbjct: 121 LVDAGCGRGGSMVMAHR----RFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM 176
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWV--QDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDL 150
D + + + + D S L GG + + +NP Y
Sbjct: 177 LDTPFD------KGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQ 230
Query: 151 YEKLSRK 157
K +
Sbjct: 231 PSKWVSQ 237
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 32.8 bits (74), Expect = 0.18
Identities = 19/176 (10%), Positives = 47/176 (26%), Gaps = 14/176 (7%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANI 92
+D+G G + LL L + +V +AK + L ++ +
Sbjct: 65 TLRRGIDIGTGASCI-YPLLGATLNGW--YFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 121
Query: 93 ADQNLESIFLAKFNKIFSFYCL-----HWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPI 147
+ A + Y + +Q +A + I
Sbjct: 122 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 181
Query: 148 YDLYEKLSRKPKWTEYTQVRTYRCLLFTGVIQVQGDITKESTIKEIFSHFDDEKVD 203
+L + + R ++ + + K+ ++ + + V
Sbjct: 182 MAEGGELEFVKRIIHDSLQLKKRLRWYSCM------LGKKCSLAPLKEELRIQGVP 231
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 32.5 bits (73), Expect = 0.26
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
L++Q ID+ K TD++ +D+G G G V +L + G++ + K+A+
Sbjct: 160 DLVAQMIDEIKMTDDDLFVDLGSGVGQV---VLQVAAATNCKHHYGVEKADIPAKYAETM 216
Query: 80 HTN 82
Sbjct: 217 DRE 219
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 31.3 bits (71), Expect = 0.39
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN 78
+ + VLD+G G +T +L ++ V V D++ ++ +
Sbjct: 21 GLEMKIVLDLGTSTGVITEQL----RKRNTV--VSTDLNIRALESHRG 62
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 31.5 bits (71), Expect = 0.40
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH-HTNP---KLEF 87
+ V+D CG G T + ++++ +D+ P I A+N+ K+EF
Sbjct: 77 FKCDVVVDAFCGVGGNTI-----QFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEF 131
Query: 88 VVANIAD 94
+ +
Sbjct: 132 ICGDFLL 138
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 31.7 bits (73), Expect = 0.43
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 26 IDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHT 81
++ + ++V D+G G G + + + ++V DVS ++ A+ H
Sbjct: 116 LELIRKYGIKTVADIGTGSGAIG--VSVAKFSDAIV--FATDVSSKAVEIARKNAERHGV 171
Query: 82 NPKLEFVVANIAD 94
+ + +
Sbjct: 172 SDRFFVRKGEFLE 184
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 31.4 bits (71), Expect = 0.46
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 16 LDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKH 75
+DA LL+ + + D+G G G + L K ++ + S M +
Sbjct: 23 MDAM-LLASLVAD---DRACRIADLGAGAGAA-GMAVAARLEK--AEVTLYERSQEMAEF 75
Query: 76 AK-------NHHTNPKLEFVVANIADQNLESIFLAKFNKIF 109
A+ N + ++E + A++ + + ++ F
Sbjct: 76 ARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF 116
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 31.4 bits (71), Expect = 0.51
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
T NE + D+G + + + +V + A+
Sbjct: 20 TKNERIADIGSDHAYLPCFAVKNQTASFA---IAGEVVDGPFQSAQKQ 64
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 30.7 bits (70), Expect = 0.83
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 35/145 (24%)
Query: 10 NNSMQQLDA--AKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLVG 65
M+ + A +L++ D + +V DVG G G +L P L + V
Sbjct: 162 YEGMETVSAAEHLILARAGD---FPATGTVADVGGGRGGFLLTVLREHPGL-----QGVL 213
Query: 66 LDVSPNMIKHAKNHHTN--PKLEFVVANI------ADQNLESIFLAKFNKIFSFYCLH-W 116
LD ++ + + + + V + AD L LH W
Sbjct: 214 LDR-AEVVARHRLDAPDVAGRWKVVEGDFLREVPHAD----VHVLK--------RILHNW 260
Query: 117 VQDQRQAI-SNIYNLLMPGGEVLLL 140
+ I +N ++ G VL++
Sbjct: 261 GDEDSVRILTNCRRVMPAHGRVLVI 285
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 30.5 bits (69), Expect = 0.89
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFVVA 90
++D+ G G + LLL K+ K+VG+++ + AK + ++E +
Sbjct: 51 GKIIDLCSGNGIIP--LLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY 106
Query: 91 NIAD 94
++
Sbjct: 107 DLKK 110
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 30.5 bits (68), Expect = 0.98
Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 14/174 (8%)
Query: 1 MHKATLYETNNSM---QQLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLP 57
+ + L + M + K ++ + ++VL+ G G G ++ L L
Sbjct: 70 LRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMS--LFLSKAV 127
Query: 58 KSVVKLVGLDVSPNMIKHAK-------NHHTNPKLEFVVANIADQNLESIFLAKFNKIFS 110
S +++ +V + AK + +E N+ + + + K +
Sbjct: 128 GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLT 187
Query: 111 FYCLHW-VQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKL-SRKPKWTE 162
F + + + + Y L GG + + + +L + + + + +
Sbjct: 188 FDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSC 241
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus
pneumoniae} PDB: 3ku1_A*
Length = 225
Score = 30.2 bits (68), Expect = 1.0
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHA----KNHHTNPKLEF 87
+ +LDVG + +L+ KS + +V + A + H K++
Sbjct: 14 SQGAILLDVGSDHAYLPIELVERGQIKSA---IAGEVVEGPYQSAVKNVEAHGLKEKIQV 70
Query: 88 VVANIAD 94
+AN
Sbjct: 71 RLANGLA 77
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 30.4 bits (69), Expect = 1.0
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHT---NPKLEFV 88
++ VL++GCG GN+T KLL K++ +D+ MI K LE
Sbjct: 41 KSSDIVLEIGCGTGNLTVKLL-----PLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVY 95
Query: 89 VANIADQNLESIFLAKFNKIFS 110
+ KF+ +
Sbjct: 96 EGDAIKTVFP-----KFDVCTA 112
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 30.0 bits (67), Expect = 1.1
Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 29/170 (17%)
Query: 18 AAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK 77
AA L + + SV+D G G G + L L V D+ P+ I+ AK
Sbjct: 37 AAYFLIEIYNDGN-IGGRSVIDAGTGNGILACGSYL--LGAESV--TAFDIDPDAIETAK 91
Query: 78 N------------HHTNPKLEFVVAN----IADQNLESIFLAKFNKIFSF-YCLHWVQDQ 120
+ K + + N ++ + F+ K + + Y +
Sbjct: 92 RNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGN-AKA 150
Query: 121 RQAISNIYNLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRTYR 170
R + ++ G+V + + +Y S E +
Sbjct: 151 RDFLRREFS---ARGDVFREEKVYITVPRIYRHHSYDRARIE---AVIFG 194
>1a3a_A Mannitol-specific EII; phosphoenolpyruvate dependent
phosphotransferase system, IIA histidine
phosphorylation, phosphotransferase; 1.80A {Escherichia
coli} SCOP: d.112.1.1 PDB: 1j6t_A 2few_A*
Length = 148
Score = 29.5 bits (67), Expect = 1.2
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 194 FSHFDDEKVDLVVFDGAPDVTGLHDLDEHLQGLLLIGALNITTFLLKPGGTFVGKIFRSR 253
F +D+ LV+ A + +EH+Q + ++T L + ++ +
Sbjct: 90 FGEEEDDIARLVIGIAARN-------NEHIQVI-----TSLTNALDDES--VIERLAHTT 135
Query: 254 NV 255
+V
Sbjct: 136 SV 137
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural
genomics, midwest CENT structural genomics, protein
structure initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 29.9 bits (67), Expect = 1.2
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
+LDVG + LL + +V + A +
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFA---IAGEVVNGPYQSALKN 64
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 29.8 bits (66), Expect = 1.3
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLEFVVANIAD 94
S+LD GCG + N + D+ I + K + +
Sbjct: 51 SSILDFGCGFNPLALYQWNEN---EKIIYHAYDIDRAEIAFLSSIIGKLKTT-IKYRFLN 106
Query: 95 QNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLL 131
+ ++ ++ +F L ++ Q I + L
Sbjct: 107 K-ESDVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLF 142
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 30.1 bits (68), Expect = 1.3
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 31 WTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
VLD G G + + P + D+ + A+
Sbjct: 201 ARPGMRVLDPFTGSGTIALEAASTLGPT--SPVYAGDLDEKRLGLAREA 247
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 29.5 bits (66), Expect = 1.6
Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 10/141 (7%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNHHTNPKLE--FVV 89
D+ + D+G G +V+ + + L+ +P + +++ +V
Sbjct: 39 QDDLVMWDIGAGSASVSIEASNLMPNGRI---FALERNPQYLGFIRDNLKKFVARNVTLV 95
Query: 90 ANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAISNIYNLLMPGGEVLLLLNAFNPIYD 149
A + L+ L +++F +++ I + L G ++L + +
Sbjct: 96 EAFAPEGLDD--LPDPDRVFIGGSGGMLEE---IIDAVDRRLKSEGVIVLNAVTLDTLTK 150
Query: 150 LYEKLSRKPKWTEYTQVRTYR 170
E L E V +
Sbjct: 151 AVEFLEDHGYMVEVACVNVAK 171
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 29.8 bits (66), Expect = 1.7
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 35 ESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKN--HHTNPKLEFVVANI 92
++ D+ CG + + + LP V + D+ ++ N VA++
Sbjct: 134 NTLRDLACGLNPLAAPWM--GLPAETV-YIASDIDARLVGFVDEALTRLNVPHRTNVADL 190
Query: 93 ADQNLESIFLAKFNKIFSFYCLHWVQDQRQAIS 125
LE + L ++ Q++
Sbjct: 191 ----LEDRLDEPADVTLLLKTLPCLETQQRGSG 219
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal
domain, methyltransferase, plasmid, transferase; HET:
SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Length = 253
Score = 29.8 bits (66), Expect = 1.7
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 12/103 (11%)
Query: 25 YIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIK--HAKNHHTN 82
Y F VLD+ CG L L + V G D+ + +
Sbjct: 97 YDFIFSAETPRRVLDIACGLN----PLALYERGIASV--WGCDIHQGLGDVITPFAREKD 150
Query: 83 PKLEFVVANIADQNLESIFLAKFNKIFSFYCLHWVQDQRQAIS 125
F + ++ + F L ++ ++ +
Sbjct: 151 WDFTFALQDVLCAPPA----EAGDLALIFKLLPLLEREQAGSA 189
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 29.4 bits (66), Expect = 2.1
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 28/141 (19%)
Query: 10 NNSMQ---QLDAAKLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLL--PNLPKSVVKLV 64
++M ++ L + ES++DVG G G VT + P+L +V
Sbjct: 170 QDAMASDSRMFKLVLQENK---RVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ- 225
Query: 65 GLDVSPNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAKFNKIFSFYCLH-WVQDQRQA 123
P ++ + + L FV ++ +SI A + + LH W +Q
Sbjct: 226 -----PQVVGNLTGN---ENLNFVGGDM----FKSIPSADA--VLLKWVLHDWNDEQSLK 271
Query: 124 I-SNIYNLL---MPGGEVLLL 140
I N + G+V+++
Sbjct: 272 ILKNSKEAISHKGKDGKVIII 292
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 29.0 bits (64), Expect = 2.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 98 ESIFLAKFNKIFSFYCLHWV----QDQRQAISNIYNLLMPGGEVLL 139
S + + S +CL V ++A+ +I LL PGG +LL
Sbjct: 168 GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 213
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 28.7 bits (65), Expect = 3.4
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 33 DNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAK----NHHTNPKLEFV 88
E L++G G + L+ V +V ++A+ +++N +L
Sbjct: 55 GGEVALEIGTGHTAM-MALMAEKFFNCKV--TATEVDEEFFEYARRNIERNNSNVRLVKS 111
Query: 89 VANIADQNLESIFLAKFNKIFS 110
I ++ + F+ IFS
Sbjct: 112 NGGI----IKGVVEGTFDVIFS 129
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 28.6 bits (65), Expect = 3.6
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 10/40 (25%)
Query: 200 EKVDLVVFD-------GAPDVTGLHDLDEHLQGLLLIGAL 232
+++D ++F+ G P VT L ++
Sbjct: 26 KEIDTIIFEKTGTLTYGTPIVTQFIGDSLSLA---YAASV 62
>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH,
interface, binding, antibody, hydrolase; 1.90A {Camelus
dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A
Length = 148
Score = 27.9 bits (63), Expect = 3.7
Identities = 6/15 (40%), Positives = 7/15 (46%), Gaps = 3/15 (20%)
Query: 109 FSFYCLHWVQDQRQA 123
YC+ W RQA
Sbjct: 29 IGPYCMGWF---RQA 40
>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin
fold, protein-protein hetero C alpha-beta orthogonal
bundle, immune system-hydrolase compl; 1.40A {Camelus
dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A
2x6m_A 1zmy_A 1f2x_K
Length = 137
Score = 27.8 bits (63), Expect = 3.7
Identities = 6/15 (40%), Positives = 7/15 (46%), Gaps = 3/15 (20%)
Query: 109 FSFYCLHWVQDQRQA 123
S C+ W RQA
Sbjct: 29 SSSNCMGWF---RQA 40
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 29.1 bits (65), Expect = 3.9
Identities = 5/28 (17%), Positives = 17/28 (60%)
Query: 315 DYVSSLSESNKKDVARFISPYHHSKHPI 342
D+ ++++++N ++ +F Y + P+
Sbjct: 416 DFRAAMADANGINLDQFALWYSQAGTPV 443
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 28.3 bits (62), Expect = 4.9
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 20 KLLSQYIDQFKWTDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH 79
LS Q + ++ +D+G G GN ++ L G ++ +
Sbjct: 229 NFLSDVYQQCQLKKGDTFMDLGSGVGNC---VVQAALECGCALSFGCEIMDDASDLTILQ 285
Query: 80 HTNPKLEFVVANIADQNLESIFLAKF 105
+ K + + N+E F
Sbjct: 286 YEELKKRCKLYGMRLNNVEFSLKKSF 311
>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB:
2bse_D
Length = 123
Score = 27.0 bits (61), Expect = 5.1
Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 3/15 (20%)
Query: 109 FSFYCLHWVQDQRQA 123
S +C+ W RQ
Sbjct: 29 GSNWCMGWF---RQL 40
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant
methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A
{Coffea canephora} PDB: 2eg5_A*
Length = 384
Score = 28.3 bits (62), Expect = 5.3
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 70 PNMIKHAKNHHTNPKLEFVVANIADQNLESIFLAK-FNKIFSFYCLHWVQDQRQAISNIY 128
P+ ++ + + ++ + +F + + + S YCLHW+ +
Sbjct: 114 PSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTEL 173
Query: 129 NLLMPGGEVLLLLNAFNPIYDLYEKLSRKPKWTEYTQVRT 168
+ + G + + PI Y K +T + ++ +
Sbjct: 174 GISVNKGCIYSSKASRPPIQKAYLDQFTK-DFTTFLRIHS 212
>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich,
immunoglobulin fold, protein-protein heterocomplex;
1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A
1g6v_K 1zv5_A 1kxq_E
Length = 134
Score = 27.4 bits (62), Expect = 5.3
Identities = 6/15 (40%), Positives = 6/15 (40%), Gaps = 3/15 (20%)
Query: 109 FSFYCLHWVQDQRQA 123
S L W RQA
Sbjct: 29 ASINYLGWF---RQA 40
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium}
SCOP: c.56.1.2
Length = 371
Score = 28.3 bits (63), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 19 AKLLSQYIDQFKWTDNESVLDVGCGPGNVTS 49
AK L+ +I D+ S L VG G +VT
Sbjct: 97 AKELNFFIKSLNIPDDASCLVVGLGNLSVTP 127
>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich,
immunoglobulin fold, protein protein heteroco alpha-beta
orthogonal bundle, hydrolase-immune system compl; 1.63A
{Camelus dromedarius} SCOP: b.1.1.1
Length = 136
Score = 27.4 bits (62), Expect = 5.5
Identities = 5/15 (33%), Positives = 6/15 (40%), Gaps = 3/15 (20%)
Query: 109 FSFYCLHWVQDQRQA 123
S + W RQA
Sbjct: 29 DSIEYMTWF---RQA 40
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 28.1 bits (63), Expect = 5.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMI----KHAKNHHTNPKLEF 87
+ VL+VG G GN+T KLL + K+V ++ P ++ K + KL+
Sbjct: 27 RPTDVVLEVGPGTGNMTVKLL-----EKAKKVVACELDPRLVAELHKRVQGTPVASKLQV 81
Query: 88 VVANI 92
+V ++
Sbjct: 82 LVGDV 86
>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel,
hydrolase, immune system; 2.00A {Camelus dromedarius}
SCOP: b.1.1.1
Length = 127
Score = 27.0 bits (61), Expect = 6.9
Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 3/15 (20%)
Query: 109 FSFYCLHWVQDQRQA 123
FS Y + W RQA
Sbjct: 29 FSSYPMGWY---RQA 40
>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1;
1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A
Length = 127
Score = 26.7 bits (60), Expect = 7.2
Identities = 5/15 (33%), Positives = 6/15 (40%), Gaps = 3/15 (20%)
Query: 109 FSFYCLHWVQDQRQA 123
Y + W RQA
Sbjct: 29 IGTYVIGWF---RQA 40
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 27.6 bits (62), Expect = 7.3
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 32 TDNESVLDVGCGPGNVTSKLLLPNLPKSVVKLVGLDVSPNMIKHAKNH-HTNPKLEFVVA 90
T ++ VL++G G G +T +L K+ K+ +++ ++ +A +E +
Sbjct: 49 TKDDVVLEIGLGKGILTEELA-----KNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWG 103
Query: 91 NIADQNLESIFLAKFNKIFS 110
+ +L + FNK+ +
Sbjct: 104 DALKVDLNKLD---FNKVVA 120
>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB:
3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A
Length = 143
Score = 27.1 bits (61), Expect = 8.0
Identities = 6/15 (40%), Positives = 7/15 (46%), Gaps = 3/15 (20%)
Query: 109 FSFYCLHWVQDQRQA 123
S Y + W RQA
Sbjct: 29 SSSYDMGWF---RQA 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.405
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,561,129
Number of extensions: 386702
Number of successful extensions: 1529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1398
Number of HSP's successfully gapped: 171
Length of query: 433
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 337
Effective length of database: 4,021,377
Effective search space: 1355204049
Effective search space used: 1355204049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)