BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11648
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 10/231 (4%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK 352
Y+NL+ N I I + F H L+ ++LS N + IE F L LNT+ L N L
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRH--LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVFSNIT 411
++ T +F+ L+ + + L N I+ I AF +P+L +LDL + +L+ + F +
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL- 155
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
+NL N + NL + A + ++ L+LS NR+ + Q SLRKL+L
Sbjct: 156 -----VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT-SLRKLWL 209
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
++ ++ AF +L LE L+L HNN+ + F + L+ + L+ N
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 13/218 (5%)
Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAM 272
N + L+L N +Q+I ++ F L++L++S +L E + +LNTLE +
Sbjct: 36 NTRYLNLQENSIQVIR--TDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLE---L 90
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN-NYLELIE 331
+N + + + L+ L + L N I I + + FN L+ + L LE I
Sbjct: 91 FDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLRRLDLGELKRLEYIS 148
Query: 332 SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
F L L + L LK I + L + + LS N++ I P +F L +L K
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
L L ++ N F ++ S + LNLS+N + +L
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLE---ELNLSHNNLMSL 241
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
+ EVP + + R L L N I+ + F +L LE+L L N + + F G
Sbjct: 26 LAEVPA----SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 511 MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDIS 567
+P+L ++L N ++ + + F + KLR L + +N + S+P F+ + +LD+
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 267 LEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNY 326
LE L + N + IR S LTSL + L + +++ I N F+ K L+E+ LS+N
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNA--FDDLKSLEELNLSHNN 237
Query: 327 LELIESDTFYNLKELNTITLSYN 349
L + D F L L + L++N
Sbjct: 238 LMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 10/231 (4%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK 352
Y+NL+ N I I + F H L+ ++LS N + IE F L LNT+ L N L
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRH--LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVFSNIT 411
++ T +F+ L+ + + L N I+ I AF +P+L +LDL + +L+ + F +
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL- 155
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
+NL N + NL + A + ++ L+LS NR+ + Q SLRKL+L
Sbjct: 156 -----VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT-SLRKLWL 209
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
++ ++ AF +L LE L+L HNN+ + F + L+ + L+ N
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 13/218 (5%)
Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAM 272
N + L+L N +Q+I ++ F L++L++S +L E + +LNTLE +
Sbjct: 36 NTRYLNLQENSIQVIR--TDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLE---L 90
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN-NYLELIE 331
+N + + + L+ L + L N I I + + FN L+ + L LE I
Sbjct: 91 FDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLRRLDLGELKRLEYIS 148
Query: 332 SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
F L L + L LK I + L + + LS N++ I P +F L +L K
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
L L ++ N F ++ S + LNLS+N + +L
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLE---ELNLSHNNLMSL 241
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
+ EVP + + R L L N I+ + F +L LE+L L N + + F G
Sbjct: 26 LAEVPA----SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 511 MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDIS 567
+P+L ++L N ++ + + F + KLR L + +N + S+P F+ + +LD+
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 267 LEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNY 326
LE L + N + IR S LTSL + L + +++ I N F+ K L+E+ LS+N
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNA--FDDLKSLEELNLSHNN 237
Query: 327 LELIESDTFYNLKELNTITLSYN 349
L + D F L L + L++N
Sbjct: 238 LMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 171/396 (43%), Gaps = 74/396 (18%)
Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS-----FSLFNSNEFPYYIL 260
N FR L +L L L +N Q ++L + F+ L++L ++ ++ + N F
Sbjct: 73 NTFRGLSSLIILKLDYN--QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF----- 125
Query: 261 NKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKI-HNNLFHFNIHKRLK 318
K L +LE L + +NNIK I+ S + N+ + ++L +NK+ I +L +F K
Sbjct: 126 -KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-GKHFT 183
Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI 378
+RLS+ L+++N L + + FKN
Sbjct: 184 LLRLSS-----------ITLQDMNEYWLGWEKCGN----PFKN----------------- 211
Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY-------ITNLYE 431
++ LDL N K+ F + + +L LSN+Y TN +
Sbjct: 212 --------TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 432 ND----KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
D K +K+ DLS ++I + + F D L +L L NEI +D AF L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGL 322
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR 547
L L+L N + + R F + L+++DLS+N I L + F L+ L + N+
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 548 LRSLPRDVFSN-TIIEKLDISYNQDKIRPGRESNPR 582
L+S+P +F T ++K+ + N P S PR
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTN-----PWDCSCPR 413
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 129/252 (51%), Gaps = 27/252 (10%)
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
D+F ++ LN L ++ I T +F + + + + FN I+Y+ P+ F N+P L L
Sbjct: 72 DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128
Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
L+ N L +F N T K T L++SNN + + E+D QA +++L LS+NR+
Sbjct: 129 VLERNDLSSLPRGIFHN-TPKLT--TLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLT 184
Query: 453 EVPVNFLQTFADS------LRKLYLDFNEIKHLDAT------AFGNLDV-LELLSLEHNN 499
V ++ + + + L L + ++ LDA+ G ++V L +L L+HNN
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPI-AVEELDASHNSINVVRGPVNVELTILKLQHNN 243
Query: 500 IAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNT 559
+ + P L +DLS+NE+ + F +L L IS+NRL +L +++
Sbjct: 244 LTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQP 299
Query: 560 I--IEKLDISYN 569
I ++ LD+S+N
Sbjct: 300 IPTLKVLDLSHN 311
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 60/316 (18%)
Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNS-NEFPY 257
+I +++ F + + +Q+L + FN ++ + + VF+ + LL + N + P
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNVPLLTVLVLERNDLSSLPR 140
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH----NNLFHFNI 313
I + N L L+M NNN++ I + + TSL + L N+++ + +LFH N+
Sbjct: 141 GIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199
Query: 314 HKRL----------KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
L +E+ S+N + ++ EL + L +N L T N
Sbjct: 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLTD--TAWLLNYP 254
Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
++ + LS+N+++ I + FV + L +L + +N+L + LNL
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-----------------VALNLYG 297
Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA 483
I L K LDLS+N + V N Q D L LYLD N I L +
Sbjct: 298 QPIPTL------------KVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVTLKLST 343
Query: 484 FGNLDVLELLSLEHNN 499
L+ L+L HN+
Sbjct: 344 H---HTLKNLTLSHND 356
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 140/310 (45%), Gaps = 29/310 (9%)
Query: 219 LSFNKLQIIELNSNVFDVFEKLQLL---EISFSLFNSNEFPYYILNKNLNTLEWLAMDNN 275
++F + +L + + D F +++LL ++ ++ F Y +T++ L M N
Sbjct: 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------AHTIQKLYMGFN 109
Query: 276 NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF 335
I+ + + N+ L + LE N +S + +FH +L + +SNN LE IE DTF
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT--PKLTTLSMSNNNLERIEDDTF 167
Query: 336 YNLKELNTITLSYNLLKSIKTTSFK---------NLNNMLNIVLSFNQIKYIYPNAFVNL 386
L + LS N L + + NL + L I ++ ++ + N+ +
Sbjct: 168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH-NSINVV 226
Query: 387 PNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND--KKQAPIYIKSL 444
V ++L KL+ NL + + + + ++LS N + + + K Q ++ L
Sbjct: 227 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR---LERL 283
Query: 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
+SNNR+ V +N +L+ L L N + H++ D LE L L+HN+I +
Sbjct: 284 YISNNRL--VALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK 340
Query: 505 KRTFIGMPNL 514
T + NL
Sbjct: 341 LSTHHTLKNL 350
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 24/235 (10%)
Query: 351 LKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNI 410
++ I T +F + + + + FN I+Y+ P+ F N+P L L L+ N L +F N
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN- 139
Query: 411 TSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS----- 465
T K T L++SNN + + E+D QA +++L LS+NR+ V ++ + + +
Sbjct: 140 TPKLT--TLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 466 -LRKLYLDFNEIKHLDAT------AFGNLDV-LELLSLEHNNIAVVVKRTFIGMPNLQII 517
L L + ++ LDA+ G ++V L +L L+HNN+ + P L +
Sbjct: 197 LLSTLAIPI-AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEV 253
Query: 518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI--IEKLDISYNQ 570
DLS+NE+ + F +L L IS+NRL +L +++ I ++ LD+S+N
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH 306
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
++ L+L++ +I+E+ + +A +++KLY+ FN I++L F N+ +L +L LE N++
Sbjct: 71 VELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
+ + + F P L + +S N + + + F + L+ L +S NRL
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 139/316 (43%), Gaps = 60/316 (18%)
Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNS-NEFPY 257
+I +++ F + + +Q+L + FN ++ + + VF+ + LL + N + P
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNVPLLTVLVLERNDLSSLPR 134
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH----NNLFHFNI 313
I + N L L+M NNN++ I + + TSL + L N+++ + +LFH N+
Sbjct: 135 GIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193
Query: 314 HKRL----------KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
L +E+ S+N + ++ N+ EL + L +N L T N
Sbjct: 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPV--NV-ELTILKLQHNNLTD--TAWLLNYP 248
Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
++ + LS+N+++ I + FV + L +L + +N+L + LNL
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-----------------VALNLYG 291
Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA 483
I L K LDLS+N + V N Q D L LYLD N I L +
Sbjct: 292 QPIPTL------------KVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVTLKLST 337
Query: 484 FGNLDVLELLSLEHNN 499
L+ L+L HN+
Sbjct: 338 HH---TLKNLTLSHND 350
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 141/312 (45%), Gaps = 29/312 (9%)
Query: 219 LSFNKLQIIELNSNVFDVFEKLQLL---EISFSLFNSNEFPYYILNKNLNTLEWLAMDNN 275
++F + +L + + D F +++LL ++ ++ F Y +T++ L M N
Sbjct: 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------AHTIQKLYMGFN 103
Query: 276 NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF 335
I+ + + N+ L + LE N +S + +FH +L + +SNN LE IE DTF
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT--PKLTTLSMSNNNLERIEDDTF 161
Query: 336 YNLKELNTITLSYNLLKSIKTTSFK---------NLNNMLNIVLSFNQIKYIYPNAFVNL 386
L + LS N L + + NL + L I ++ ++ + N+ +
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH-NSINVV 220
Query: 387 PNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND--KKQAPIYIKSL 444
V ++L KL+ NL + + + + ++LS N + + + K Q ++ L
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR---LERL 277
Query: 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
+SNNR+ V +N +L+ L L N + H++ D LE L L+HN+I +
Sbjct: 278 YISNNRL--VALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK 334
Query: 505 KRTFIGMPNLQI 516
T + NL +
Sbjct: 335 LSTHHTLKNLTL 346
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 45/235 (19%)
Query: 275 NNIKNIRNYSLYNLTSL--------NYINLEYNKISKIHNNLFHFNIHKRLKEIRL---S 323
NN KN + S LT++ ++L+ NK+S + + FH RL ++RL +
Sbjct: 15 NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH-----RLTKLRLLYLN 69
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
+N L+ + + F LK L T+ ++ N L+++ F L N+ + L NQ+K + P F
Sbjct: 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
+L L L L N+L+ VF +TS +K
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTS----------------------------LKE 161
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
L L NN+++ VP + L+ L LD N++K + AF +L+ L++L L+ N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTE-LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 7/168 (4%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
NK++ L F L L+ L L+ NKLQ L + +F + L+ L ++ + + P
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQA--LPI 102
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
+ ++ +N E L +D N +K++ +LT L Y++L YN++ + + F+ L
Sbjct: 103 GVFDQLVNLAE-LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV--FDKLTSL 159
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
KE+RL NN L+ + F L EL T+ L N LK + +F +L +
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P K LDL +N++ +P LR LYL+ N+++ L A F L LE L +
Sbjct: 36 PADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N + + F + NL + L N++ L F KL L++ +N L+SLP+ VF
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 558 N-TIIEKLDISYNQDKIRP 575
T +++L + NQ K P
Sbjct: 155 KLTSLKELRLYNNQLKRVP 173
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 30/186 (16%)
Query: 391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNR 450
KLDLQ NKL F +T ++ L L++N+
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTK----------------------------LRLLYLNDNK 72
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
+Q +P + + L L++ N+++ L F L L L L+ N + + R F
Sbjct: 73 LQTLPAGIFKELKN-LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 511 MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYN 569
+ L + L +NE+ L F L+ L + +N+L+ +P F T ++ L + N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 570 QDKIRP 575
Q K P
Sbjct: 192 QLKRVP 197
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 12/105 (11%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
L L N+L L ++ ++TKL +L L ++LQ G+F+ + L+EL + L
Sbjct: 114 LRLDRNQLKSL-PPRVFDSLTKLTYLS---LGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + AFD + TLK+ N Q++ +P G FD +E ++ + L
Sbjct: 170 KRVPEGAFDKLTELK--TLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 48/148 (32%)
Query: 3 LDLSHNKLSVL---------NMATLYSNVTKLQHLGTTILK-----------GDQLQ--- 39
LDL NKLS L + LY N KLQ L I K ++LQ
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 40 -GIFNS--KLRELEITGKDLKFIDPSAFDNI-----------------DACYD-LT---- 74
G+F+ L EL + LK + P FD++ +D LT
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 75 LKITNTQIEELPSGLFDKIENIEQMTLD 102
L++ N Q++ +P G FDK+ ++ + LD
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLD 189
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 12/248 (4%)
Query: 278 KNIRNYSLYNLTSLNYINLEYNKISKIHNNLF-HFNIHKRLKEIRLSNNYLELIESDTFY 336
KN+R T+ +NL N+I I N F H + L+ ++LS N++ IE F
Sbjct: 53 KNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNHIRTIEIGAFN 109
Query: 337 NLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD 396
L LNT+ L N L +I +F L+ + + L N I+ I AF +P+L +LDL +
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 397 -NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
+L + F ++ NL N + NL E I + LDLS N + +
Sbjct: 170 LKRLSYISEGAFEGLS------NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
Q L+KL++ ++I+ ++ AF NL L ++L HNN+ ++ F + +L+
Sbjct: 224 PGSFQGLMH-LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282
Query: 516 IIDLSFNE 523
I L N
Sbjct: 283 RIHLHHNP 290
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 22/296 (7%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS-NVFDVFEKLQLLEISFSLFNSNEFP 256
N+I + N F+HL +L+ L LS N ++ IE+ + N L+L + + + F
Sbjct: 74 NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL-EYNKISKIHNNLFHFNIHK 315
Y L+ L+ L + NN I++I +Y+ + SL ++L E ++S I F +
Sbjct: 134 Y------LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
R + + N L E L +L+ + LS N L +I+ SF+ L ++ + + +QI
Sbjct: 188 RYLNLAMCN----LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS------NITSKQTPMNLNLS----NNY 425
+ I NAF NL +LV+++L N L ++F+ I P N N + +
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWW 303
Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
I ++ ++ +L I E+ N+ +A + + D N + + A
Sbjct: 304 IKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAA 359
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 121/265 (45%), Gaps = 36/265 (13%)
Query: 297 EYNKISKIHNNLFHF--NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI 354
+++K+ + NL I + + L N +++I+ ++F +L+ L + LS N +++I
Sbjct: 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103
Query: 355 KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414
+ +F L N+ + L N++ I AFV L L +L L++N ++ F+ I S
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS-- 161
Query: 415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN-NRIQEVPVNFLQTFADSLRKLYLDF 473
++ LDL R+ + + ++ LR L L
Sbjct: 162 --------------------------LRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAM 194
Query: 474 NEIKHL-DATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532
++ + + T LD L+L N+++ + +F G+ +LQ + + ++I ++ F
Sbjct: 195 CNLREIPNLTPLIKLDELDL---SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251
Query: 533 YFSFKLRILNISHNRLRSLPRDVFS 557
L +N++HN L LP D+F+
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFT 276
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 179/401 (44%), Gaps = 68/401 (16%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI-------SFSLF 250
N + D+ F +L +L+ LSL +N +Q L+ F L+ L + S SL
Sbjct: 258 NNLHDVGNGSFSYLPSLRYLSLEYNNIQ--RLSPRSFYGLSNLRYLSLKRAFTKQSVSLA 315
Query: 251 ---NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE--YNKISKIH 305
N ++F + + L LE+L MD+NNI + ++ + L SL Y++L + + +
Sbjct: 316 SHPNIDDFSF----QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLT 371
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL-KSIKTTSFKNLNN 364
N F H L + L+ N++ I + TF L +L + L N + + + ++ L N
Sbjct: 372 NETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRN 431
Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN----LN 420
+ I LS+N+ + ++F +P+L +L L+ LK+ +++ S P+ L+
Sbjct: 432 IFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS-----PSPFRPLRNLTILD 486
Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV--------PVNFLQTFADSLRKLYLD 472
LSNN I N+ E D + ++ LD +N + + PVNFL+
Sbjct: 487 LSNNNIANINE-DLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLK------------ 533
Query: 473 FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532
L L +L+LE N + + F + ++ ++ ++ E F
Sbjct: 534 -------------GLSHLHILNLESNGLDEIPVGVFKNL--FELKSINLGLNNLNKLEPF 578
Query: 533 YF--SFKLRILNISHNRLRSLPRDVFSNTI--IEKLDISYN 569
F LR LN+ N + S+ +DVF + LD+ +N
Sbjct: 579 IFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 144/586 (24%), Positives = 248/586 (42%), Gaps = 83/586 (14%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTT----ILKGDQLQGIFNSKLRELEITGKDL 56
+ LDLSHN LS + T + L L+ ++L+ + NS LR+L+++ L
Sbjct: 124 IKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPL 183
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQI-EELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
K P F I + L L N Q+ L L ++ N L L++N+L +AT
Sbjct: 184 KEFSPGCFQTIGKLFALLLN--NAQLNPHLTEKLCWELSNTSIQNLSLANNQL----LAT 237
Query: 116 LYSNVTKLQHLGTTILKDREKXXXXXXXXXXRCNKITDLNGNLFRHLQKSIVKAKKNNNN 175
S + L+ T L N + D+ F +L ++ N
Sbjct: 238 SESTFSGLKWTNLTQLD-------------LSYNNLHDVGNGSFSYLPS--LRYLSLEYN 282
Query: 176 NEDQVSDREKXXXXXXXXXXRCNKITDLNGNLFRHLYNLQELSL--SFNKLQIIELNS-- 231
N ++S R F L NL+ LSL +F K Q + L S
Sbjct: 283 NIQRLSPRS-----------------------FYGLSNLRYLSLKRAFTK-QSVSLASHP 318
Query: 232 NVFDV-FEKLQLLEISFSLFNSNEFPYYILN--KNLNTLEWLAMDN--NNIKNIRNYSLY 286
N+ D F+ L+ LE + + N P N L +L++L++ +++ + N +
Sbjct: 319 NIDDFSFQWLKYLE--YLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFV 376
Query: 287 NL--TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI 344
+L + L +NL N ISKI N F + R+ ++ L N + + + L+ + I
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGL-NEIEQKLSGQEWRGLRNIFEI 435
Query: 345 TLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY--IYPNAFVNLPNLVKLDLQDNKLKDF 402
LSYN + T+SF + ++ ++L +K I P+ F L NL LDL +N + +
Sbjct: 436 YLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI 495
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPI-------YIKSLDLSNNRIQEVP 455
N ++ + + + L+ +N + L++ P+ ++ L+L +N + E+P
Sbjct: 496 NEDLLEGLENLEI---LDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIP 552
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMP--N 513
V + + L+ + L N + L+ F + L L+L+ N I V K F G P N
Sbjct: 553 VGVFKNLFE-LKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVF-GPPFQN 610
Query: 514 LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNT 559
L +D+ FN +F + +N +H + L NT
Sbjct: 611 LNSLDMRFNPFDCTCESISWF---VNWINQTHTNISELSTHYLCNT 653
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 121/283 (42%), Gaps = 42/283 (14%)
Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL 329
L + +N ++ + + + L ++ +N ISK+ L I LK + L +N L
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQ--ILPLLKVLNLQHNELSQ 87
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNA------- 382
I TF L + L N + IK+ FKN N++ + LS N +
Sbjct: 88 ISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENL 147
Query: 383 -------------------FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
F+ +L KLDL N LK+F+ F I + L N
Sbjct: 148 QELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGK----LFALLLN 203
Query: 424 NYITNLYENDK---KQAPIYIKSLDLSNNRIQEVPVNFLQTFAD----SLRKLYLDFNEI 476
N N + +K + + I++L L+NN++ + TF+ +L +L L +N +
Sbjct: 204 NAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSES---TFSGLKWTNLTQLDLSYNNL 260
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
+ +F L L LSLE+NNI + R+F G+ NL+ + L
Sbjct: 261 HDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 438 PIYIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
P I L+L++N+++ +P NF T L L FN I L+ L +L++L+L+
Sbjct: 24 PSNITVLNLTHNQLRRLPPTNF--TRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
HN ++ + +TF+ NL +DL N I + F L L++SHN L S
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 107/277 (38%), Gaps = 69/277 (24%)
Query: 341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK 400
+ + L++N L+ + T+F + + + FN I + P LP L L+LQ N+L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 401 DFNLNVF---SNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN 457
+ F +N+T L+L +N I + N K IK LDLS+N + +
Sbjct: 87 QISDQTFVFCTNLTE------LDLMSNSIHKIKSNPFKNQKNLIK-LDLSHNGLSSTKLG 139
Query: 458 ---------------------------FLQTFADSLRKLYLDFNEIKHLDATAF---GNL 487
FL SLRKL L N +K F G L
Sbjct: 140 TGVQLENLQELLLAKNKILALRSEELEFLGN--SSLRKLDLSSNPLKEFSPGCFQTIGKL 197
Query: 488 DVLEL------------------------LSLEHNNIAVVVKRTFIGM--PNLQIIDLSF 521
L L LSL +N + + TF G+ NL +DLS+
Sbjct: 198 FALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSY 257
Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSL-PRDVFS 557
N + + F + LR L++ +N ++ L PR +
Sbjct: 258 NNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYG 294
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 12/211 (5%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK 352
Y+NL N I I + F H L+ ++L N + IE F L LNT+ L N L
Sbjct: 79 YLNLMENNIQMIQADTFRHLHH--LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVFSNIT 411
I + +F+ L+ + + L N I+ I AF +P+L++LDL + KL+ + F +
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL- 195
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQTFADSLRKLY 470
NL N + N+ + + ++ L++S N E+ P +F SL+KL+
Sbjct: 196 -----FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLW 248
Query: 471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
+ +++ ++ AF L L L+L HNN++
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 30/240 (12%)
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
+ + L N +++I++DTF +L L + L N ++ I+ +F L ++ + L N +
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
I AF L L +L L++N ++ F+ + S M L+L +
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL---MRLDLGELKKLEYISEGAFEG 194
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
+K L+L I+++P N T L +L + N + +F L L+ L + +
Sbjct: 195 LFNLKYLNLGMCNIKDMP-NL--TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
+ ++++ + F G+ +L ++L N++HN L SLP D+F+
Sbjct: 252 SQVSLIERNAFDGLASL--VEL----------------------NLAHNNLSSLPHDLFT 287
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
+ EVP Q + R L L N I+ + A F +L LE+L L N+I + F G
Sbjct: 66 LSEVP----QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121
Query: 511 MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
+ +L ++L N ++++ F + KLR L + +N + S+P F
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 119/276 (43%), Gaps = 19/276 (6%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
NKIT++ F++L NL L L NK I +++ F KL+ L +S + E P
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQL--KELP- 116
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN--KISKIHNNLFHFNIHK 315
K TL+ L + N I +R L + + L N K S I N F K
Sbjct: 117 ---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MK 171
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
+L IR+++ + I +L EL+ L N + + S K LNN+ + LSFN I
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
+ + N P+L +L L +NKL + V + + + L NN I+ + ND
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKL----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
K S + PV + + + R +Y+
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 26/238 (10%)
Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
F L+ ++ S+ LE + D + L+ L N + IK FKNL N+ ++L
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLIL 83
Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF---------NLNVFSNITSKQTPMNLNL 421
N+I I P AF L L +L L N+LK+ L V N +K N
Sbjct: 84 INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 143
Query: 422 SNNYI----------TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
N I ++ EN Q + + +++ I +P Q SL +L+L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPSLTELHL 199
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTG 529
D N+I +DA + L+ L L L N+I+ V + P+L+ + L+ N++ + G
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL 329
L + NN I I++ NL +L+ + L NKISKI F + +L+ + LS N L+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKE 114
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY--IYPNAFVNLP 387
+ L+EL + N + ++ + F LN M+ + L N +K I AF +
Sbjct: 115 LPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447
L + + D +NIT+ P L P + L L
Sbjct: 172 KLSYIRIAD-----------TNITT--IPQGL------------------PPSLTELHLD 200
Query: 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
N+I +V L+ ++L KL L FN I +D + N L L L +NN V V
Sbjct: 201 GNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHL-NNNKLVKVPGG 258
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQF 532
+Q++ L N IS + F
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDF 283
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
LL L++N I + F + NL + L N+IS ++ F KL L +S N+L+ L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 552 PR 553
P
Sbjct: 116 PE 117
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 139/319 (43%), Gaps = 40/319 (12%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE--YNKISKIHNNLFHFNIHKRLKEIR 321
L LE L M++N+I I++ L +L Y++L + + + N F H L +
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380
L+ N + IESD F L L + L N + + + ++ L N+ I LS+N+ +
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
N+F +P+L +L L+ LK NV S+ + Q NL +
Sbjct: 448 NSFALVPSLQRLMLRRVALK----NVDSSPSPFQPLRNLTI------------------- 484
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA--------FGNLDVLEL 492
LDLSNN I + + L+ + L L L N + L A L L +
Sbjct: 485 ---LDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
L+LE N + F + L+IIDL N ++ L F L+ LN+ N + S+
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 553 RDVFSNTI--IEKLDISYN 569
+ VF + +LD+ +N
Sbjct: 601 KKVFGPAFRNLTELDMRFN 619
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 41/328 (12%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T++ +NL +N++ ++ +F + +L + + N + +E + L L + L +
Sbjct: 25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN----------- 397
N L + +F N+ + L N I+ I N FV NL+ LDL N
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 398 ----------------KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
LK L++F+N + K+ ++ N + + + +++
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV--LELLSLEHNN 499
++ L + +++ + T S+R L L +++ T F L L +L L +NN
Sbjct: 203 NNVQLGPSLTEKLCLELANT---SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 500 IAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN------RLRSLPR 553
+ VV +F +P L+ L +N I L + F +R LN+ + L SLP+
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319
Query: 554 -DVFSNTIIEKLDISYNQDKIRPGRESN 580
D FS ++ L+ +D PG +SN
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSN 347
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 148/352 (42%), Gaps = 70/352 (19%)
Query: 267 LEW-----LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH-------FNIH 314
L+W L + NN+ + N S L L Y LEYN I + ++ H N+
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM--LNIVLSF 372
+ + +S L I+ +F LK L + + N + IK+ F L N+ L++ SF
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364
Query: 373 NQIKYIYPNAFVNLPN--LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
++ + FV+L + L L+L NK+ + FS + + L+L N I
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV---LDLGLNEIGQEL 421
Query: 431 ENDKKQA-----PIYI---KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
+ + IY+ K L L+ N VP SL++L L +K++D++
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP---------SLQRLMLRRVALKNVDSS 472
Query: 483 A--------------------------FGNLDVLELLSLEHNNIAVVVKRTFIGMP---- 512
L+ LE+L L+HNN+A + K G P
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 513 ----NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+L I++L N + E F F+L+I+++ N L +LP VF+N +
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 31/168 (18%)
Query: 438 PIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
P I L+L++N+++ +P NF T L L + FN I L+ L +L++L+L+
Sbjct: 24 PTNITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN---------- 546
HN ++ + +TF NL + L N I + F L L++SHN
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 547 -----------------RLRSLPRDVFSNTIIEKLDISYNQDK-IRPG 576
L+S D+F+N+ ++KL++S NQ K PG
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGT----TILKGDQLQGIFNSKLRELEITGKDL 56
+TLDLSHN LS + T + L + LK ++L NS L++LE++ +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQI-EELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
K P F I + L L N Q+ L L ++ N L LS+++LS + T
Sbjct: 184 KEFSPGCFHAIGRLFGLFLN--NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 116 L----YSNVTKL 123
++N+T L
Sbjct: 242 FLGLKWTNLTML 253
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 119/276 (43%), Gaps = 19/276 (6%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
NKIT++ F++L NL L L NK I +++ F KL+ L +S + E P
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQL--KELP- 116
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN--KISKIHNNLFHFNIHK 315
K TL+ L + N I +R L + + L N K S I N F K
Sbjct: 117 ---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MK 171
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
+L IR+++ + I +L EL+ L N + + S K LNN+ + LSFN I
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
+ + N P+L +L L +NKL + V + + + L NN I+ + ND
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKL----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
K S + PV + + + R +Y+
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 26/238 (10%)
Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
F L+ ++ S+ LE + D + L+ L N + IK FKNL N+ ++L
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLIL 83
Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF---------NLNVFSNITSKQTPMNLNL 421
N+I I P AF L L +L L N+LK+ L V N +K N
Sbjct: 84 INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 143
Query: 422 SNNYI----------TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
N I ++ EN Q + + +++ I +P Q SL +L+L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPSLTELHL 199
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTG 529
D N+I +DA + L+ L L L N+I+ V + P+L+ + L+ N++ + G
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL 329
L + NN I I++ NL +L+ + L NKISKI F + +L+ + LS N L+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKE 114
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY--IYPNAFVNLP 387
+ L+EL + N + ++ + F LN M+ + L N +K I AF +
Sbjct: 115 LPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447
L + + D +NIT+ P L P + L L
Sbjct: 172 KLSYIRIAD-----------TNITT--IPQGL------------------PPSLTELHLD 200
Query: 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
N+I +V L+ ++L KL L FN I +D + N L L L +NN V V
Sbjct: 201 GNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHL-NNNKLVKVPGG 258
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQF 532
+Q++ L N IS + F
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDF 283
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
LL L++N I + F + NL + L N+IS ++ F KL L +S N+L+ L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 552 PR 553
P
Sbjct: 116 PE 117
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 139/319 (43%), Gaps = 40/319 (12%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE--YNKISKIHNNLFHFNIHKRLKEIR 321
L LE L M++N+I I++ L +L Y++L + + + N F H L +
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 397
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380
L+ N + IESD F L L + L N + + + ++ L N+ I LS+N+ +
Sbjct: 398 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 457
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
N+F +P+L +L L+ LK NV S+ + Q NL +
Sbjct: 458 NSFALVPSLQRLMLRRVALK----NVDSSPSPFQPLRNLTI------------------- 494
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA--------FGNLDVLEL 492
LDLSNN I + + L+ + L L L N + L A L L +
Sbjct: 495 ---LDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 550
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
L+LE N + F + L+IIDL N ++ L F L+ LN+ N + S+
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 610
Query: 553 RDVFSNTI--IEKLDISYN 569
+ VF + +LD+ +N
Sbjct: 611 KKVFGPAFRNLTELDMRFN 629
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 148/352 (42%), Gaps = 70/352 (19%)
Query: 267 LEW-----LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH-------FNIH 314
L+W L + NN+ + N S L L Y LEYN I + ++ H N+
Sbjct: 255 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 314
Query: 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM--LNIVLSF 372
+ + +S L I+ +F LK L + + N + IK+ F L N+ L++ SF
Sbjct: 315 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 374
Query: 373 NQIKYIYPNAFVNLPN--LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
++ + FV+L + L L+L NK+ + FS + + L+L N I
Sbjct: 375 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV---LDLGLNEIGQEL 431
Query: 431 ENDKKQA-----PIYI---KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
+ + IY+ K L L+ N VP SL++L L +K++D++
Sbjct: 432 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP---------SLQRLMLRRVALKNVDSS 482
Query: 483 A--------------------------FGNLDVLELLSLEHNNIAVVVKRTFIGMP---- 512
L+ LE+L L+HNN+A + K G P
Sbjct: 483 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 542
Query: 513 ----NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+L I++L N + E F F+L+I+++ N L +LP VF+N +
Sbjct: 543 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 594
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 41/328 (12%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T++ +NL +N++ ++ +F + +L + + N + +E + L L + L +
Sbjct: 35 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN----------- 397
N L + +F N+ + L N I+ I N FV NL+ LDL N
Sbjct: 93 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 152
Query: 398 ----------------KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
LK L++F+N + K+ ++ N + + + +++
Sbjct: 153 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 212
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV--LELLSLEHNN 499
++ L + +++ + T S+R L L +++ T F L L +L L +NN
Sbjct: 213 NNVQLGPSLTEKLCLELANT---SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 269
Query: 500 IAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN------RLRSLPR 553
+ VV +F +P L+ L +N I L + F +R LN+ + L SLP+
Sbjct: 270 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 329
Query: 554 -DVFSNTIIEKLDISYNQDKIRPGRESN 580
D FS ++ L+ +D PG +SN
Sbjct: 330 IDDFSFQWLKCLEHLNMEDNDIPGIKSN 357
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 31/168 (18%)
Query: 438 PIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
P I L+L++N+++ +P NF T L L + FN I L+ L +L++L+L+
Sbjct: 34 PTNITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 91
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN---------- 546
HN ++ + +TF NL + L N I + F L L++SHN
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 151
Query: 547 -----------------RLRSLPRDVFSNTIIEKLDISYNQDK-IRPG 576
L+S D+F+N+ ++KL++S NQ K PG
Sbjct: 152 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 199
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGT----TILKGDQLQGIFNSKLRELEITGKDL 56
+TLDLSHN LS + T + L + LK ++L NS L++LE++ +
Sbjct: 134 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 193
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQI-EELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
K P F I + L L N Q+ L L ++ N L LS+++LS + T
Sbjct: 194 KEFSPGCFHAIGRLFGLFLN--NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 251
Query: 116 L----YSNVTKL 123
++N+T L
Sbjct: 252 FLGLKWTNLTML 263
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 139/319 (43%), Gaps = 40/319 (12%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE--YNKISKIHNNLFHFNIHKRLKEIR 321
L LE L M++N+I I++ L +L Y++L + + + N F H L +
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 392
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380
L+ N + IESD F L L + L N + + + ++ L N+ I LS+N+ +
Sbjct: 393 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 452
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
N+F +P+L +L L+ LK NV S+ + Q NL +
Sbjct: 453 NSFALVPSLQRLMLRRVALK----NVDSSPSPFQPLRNLTI------------------- 489
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA--------FGNLDVLEL 492
LDLSNN I + + L+ + L L L N + L A L L +
Sbjct: 490 ---LDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 545
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
L+LE N + F + L+IIDL N ++ L F L+ LN+ N + S+
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 605
Query: 553 RDVFSNTI--IEKLDISYN 569
+ VF + +LD+ +N
Sbjct: 606 KKVFGPAFRNLTELDMRFN 624
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 41/328 (12%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T++ +NL +N++ ++ +F + +L + + N + +E + L L + L +
Sbjct: 30 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN----------- 397
N L + +F N+ + L N I+ I N FV NL+ LDL N
Sbjct: 88 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 147
Query: 398 ----------------KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
LK L++F+N + K+ ++ N + + + +++
Sbjct: 148 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 207
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV--LELLSLEHNN 499
++ L + +++ + T S+R L L +++ T F L L +L L +NN
Sbjct: 208 NNVQLGPSLTEKLCLELANT---SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 264
Query: 500 IAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN------RLRSLPR 553
+ VV +F +P L+ L +N I L + F +R LN+ + L SLP+
Sbjct: 265 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 324
Query: 554 -DVFSNTIIEKLDISYNQDKIRPGRESN 580
D FS ++ L+ +D PG +SN
Sbjct: 325 IDDFSFQWLKCLEHLNMEDNDIPGIKSN 352
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 148/352 (42%), Gaps = 70/352 (19%)
Query: 267 LEW-----LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH-------FNIH 314
L+W L + NN+ + N S L L Y LEYN I + ++ H N+
Sbjct: 250 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 309
Query: 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM--LNIVLSF 372
+ + +S L I+ +F LK L + + N + IK+ F L N+ L++ SF
Sbjct: 310 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 369
Query: 373 NQIKYIYPNAFVNLPN--LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
++ + FV+L + L L+L NK+ + FS + + L+L N I
Sbjct: 370 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV---LDLGLNEIGQEL 426
Query: 431 ENDKKQA-----PIYI---KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
+ + IY+ K L L+ N VP SL++L L +K++D++
Sbjct: 427 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP---------SLQRLMLRRVALKNVDSS 477
Query: 483 A--------------------------FGNLDVLELLSLEHNNIAVVVKRTFIGMP---- 512
L+ LE+L L+HNN+A + K G P
Sbjct: 478 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 537
Query: 513 ----NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+L I++L N + E F F+L+I+++ N L +LP VF+N +
Sbjct: 538 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 589
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 31/168 (18%)
Query: 438 PIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
P I L+L++N+++ +P NF T L L + FN I L+ L +L++L+L+
Sbjct: 29 PTNITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 86
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN---------- 546
HN ++ + +TF NL + L N I + F L L++SHN
Sbjct: 87 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 146
Query: 547 -----------------RLRSLPRDVFSNTIIEKLDISYNQDK-IRPG 576
L+S D+F+N+ ++KL++S NQ K PG
Sbjct: 147 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 194
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGT----TILKGDQLQGIFNSKLRELEITGKDL 56
+TLDLSHN LS + T + L + LK ++L NS L++LE++ +
Sbjct: 129 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 188
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQI-EELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
K P F I + L L N Q+ L L ++ N L LS+++LS + T
Sbjct: 189 KEFSPGCFHAIGRLFGLFLN--NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 246
Query: 116 L----YSNVTKL 123
++N+T L
Sbjct: 247 FLGLKWTNLTML 258
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 140/316 (44%), Gaps = 44/316 (13%)
Query: 274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
+N I + +SL + ++ I N F ++ + LS+ ++ + S
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
F LK+L + L+YN + I +F L+N+ + LS+N + +Y + F LP + +D
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLD---LSNNR 450
LQ N + F + QT L+L +N +T ++ +I S+ LS N+
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQT---LDLRDNALTTIH---------FIPSIPDIFLSGNK 392
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE-LLSLEHNNIAVVVKRTFI 509
+ +P K+ L N I HL NLD+L LL + H I ++ + F
Sbjct: 393 LVTLP------------KINLTANLI-HLSENRLENLDILYFLLRVPHLQILILNQNRFS 439
Query: 510 GM---------PNLQIIDLSFNEISM-----LTGEQFYFSFKLRILNISHNRLRSLPRDV 555
P+L+ + L N + + L + F L++L ++HN L SLP V
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499
Query: 556 FSN-TIIEKLDISYNQ 570
FS+ T + L ++ N+
Sbjct: 500 FSHLTALRGLSLNSNR 515
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 132/302 (43%), Gaps = 50/302 (16%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
+S+ +++L + + +++ +F K LK + L+ N + I + FY L L + LSY
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNL---- 404
NLL + +++F L + I L N I I F L L LDL+DN L +
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
Query: 405 -NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPI--------YIKSLDLSNNRIQ--- 452
++F + T +NL+ N I +L EN + I +++ L L+ NR
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLI-HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442
Query: 453 --EVPV------------NFLQTFADS------------LRKLYLDFNEIKHLDATAFGN 486
+ P N LQ ++ L+ LYL+ N + L F +
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502
Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
L L LSL N + V+ NL+I+D+S N++ + F L +L+I+HN
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVF---VSLSVLDITHN 557
Query: 547 RL 548
+
Sbjct: 558 KF 559
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 28/173 (16%)
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL-----DLQDNKLKDFNLNVF 407
+I +F+NL N+ + L ++I +++P+AF L +L +L L D LKD F
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD---GYF 119
Query: 408 SNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI-----------QEVPV 456
N+ + L+LS N I +LY + +KS+D S+N+I Q +
Sbjct: 120 RNLKAL---TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176
Query: 457 NFLQTFADSL-RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTF 508
+F A+SL ++ +D+ + + F N+ VLE+L + N V + F
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMN----PFRNM-VLEILDVSGNGWTVDITGNF 224
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
E L + + + + + + LT L ++NL+YN++ + +F + L + L+NN L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLANNQL 95
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
+ F +L +L+ + L N LKS+ + F L + + L+ NQ++ I AF L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQT 415
NL L L N+L+ F + QT
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQT 183
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 31/167 (18%)
Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267
FR L L L+L +N+LQ L++ VFD +L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQT--LSAGVFD---------------------------DLTEL 85
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
L + NN + ++ +LT L+ + L N++ + + +F + +LKE+RL+ N L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQL 143
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
+ I + F L L T++LS N L+S+ +F L + I L NQ
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
K LD+ G E L L+ +A + TF G+ L ++L +N++ L+ F
Sbjct: 24 KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 537 KLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRP 575
+L L +++N+L SLP VF + T ++KL + NQ K P
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 12/106 (11%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
TL L++N+L+ L + ++ ++T+L L L G+QL+ G+F+ +KL+EL +
Sbjct: 87 TLGLANNQLASLPLG-VFDHLTQLDKL---YLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
L+ I AFD + TL ++ Q++ +P G FD++ ++ +TL
Sbjct: 143 LQSIPAGAFDKLTNLQ--TLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 17/129 (13%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
L+L +N+L L+ A ++ ++T+L LG L +QL G+F+ ++L +L + G L
Sbjct: 64 LNLDYNQLQTLS-AGVFDDLTELGTLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMAT 115
K + FD + +L ++ Q++ +P+G FDK+ N++ TL LS N+L SV + A
Sbjct: 120 KSLPSGVFDRLTKLKEL--RLNTNQLQSIPAGAFDKLTNLQ--TLSLSTNQLQSVPHGA- 174
Query: 116 LYSNVTKLQ 124
+ + KLQ
Sbjct: 175 -FDRLGKLQ 182
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 434 KKQAPIYIKSLDLSNNRIQ------EVPVNFLQTFADS-------LRKLYLDFNEIKHLD 480
KK+ KSLD + I ++ L T +D+ L L LD+N+++ L
Sbjct: 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI 540
A F +L L L L +N +A + F + L + L N++ L F KL+
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 541 LNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRP 575
L ++ N+L+S+P F T ++ L +S NQ + P
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLN------LSNNYITNLYENDKKQAPIYIKSL 444
KLDLQ L + F +T K T +NL+ LS +L E + +L
Sbjct: 39 KLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTE---------LGTL 88
Query: 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
L+NN++ +P+ L KLYL N++K L + F L L+ L L N + +
Sbjct: 89 GLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
F + NLQ L++S N+L+S+P F
Sbjct: 148 AGAFDKLTNLQT------------------------LSLSTNQLQSVPHGAF 175
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N++ + F L NLQ LSLS N+LQ + FD KLQ + + + F+ +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQFDCSRCEI 198
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
L+ +W+ ++N +K+ +L+
Sbjct: 199 LYLS------QWIRENSNKVKDGTGQNLH 221
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
E L + + + + + + LT L ++NL+YN++ + +F + L + L+NN L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLANNQL 95
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
+ F +L +L+ + L N LKS+ + F L + + L+ NQ++ I AF L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQT 415
NL L L N+L+ F + QT
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQT 183
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 31/167 (18%)
Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267
FR L L L+L +N+LQ L++ VFD +L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQT--LSAGVFD---------------------------DLTEL 85
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
L + NN + ++ +LT L+ + L N++ + + +F + +LKE+RL+ N L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQL 143
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
+ I + F L L T++LS N L+S+ +F L + I L NQ
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
K LD+ G E L L+ +A + TF G+ L ++L +N++ L+ F
Sbjct: 24 KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 537 KLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRP 575
+L L +++N+L SLP VF + T ++KL + NQ K P
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 14/122 (11%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
TL L++N+L+ L + ++ ++T+L L L G+QL+ G+F+ +KL+EL +
Sbjct: 87 TLGLANNQLASLPLG-VFDHLTQLDKL---YLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
L+ I AFD + TL ++ Q++ +P G FD++ ++ +T L N+ T
Sbjct: 143 LQSIPAGAFDKLTNLQ--TLSLSTNQLQSVPHGAFDRLGKLQTIT--LFGNQFDCSRCET 198
Query: 116 LY 117
LY
Sbjct: 199 LY 200
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 17/129 (13%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
L+L +N+L L+ A ++ ++T+L LG L +QL G+F+ ++L +L + G L
Sbjct: 64 LNLDYNQLQTLS-AGVFDDLTELGTLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMAT 115
K + FD + +L ++ Q++ +P+G FDK+ N++ TL LS N+L SV + A
Sbjct: 120 KSLPSGVFDRLTKLKEL--RLNTNQLQSIPAGAFDKLTNLQ--TLSLSTNQLQSVPHGA- 174
Query: 116 LYSNVTKLQ 124
+ + KLQ
Sbjct: 175 -FDRLGKLQ 182
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 434 KKQAPIYIKSLDLSNNRIQ------EVPVNFLQTFADS-------LRKLYLDFNEIKHLD 480
KK+ KSLD + I ++ L T +D+ L L LD+N+++ L
Sbjct: 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI 540
A F +L L L L +N +A + F + L + L N++ L F KL+
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 541 LNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRP 575
L ++ N+L+S+P F T ++ L +S NQ + P
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLN------LSNNYITNLYENDKKQAPIYIKSL 444
KLDLQ L + F +T K T +NL+ LS +L E + +L
Sbjct: 39 KLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTE---------LGTL 88
Query: 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
L+NN++ +P+ L KLYL N++K L + F L L+ L L N + +
Sbjct: 89 GLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
F + NLQ L++S N+L+S+P F
Sbjct: 148 AGAFDKLTNLQT------------------------LSLSTNQLQSVPHGAF 175
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N++ + F L NLQ LSLS N+LQ + FD KLQ + + + F+ +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQFDCSRCET 198
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
L+ +W+ ++N +K+ +L+
Sbjct: 199 LYLS------QWIRENSNKVKDGTGQNLH 221
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 43/298 (14%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T ++L N+I ++ + F H L+E+ L+ N + +E F NL L T+ L
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPH--LEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N LK I F L+N+ + +S N+I + F +L NL L++ DN L + FS
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRK 468
+ S + L L +T++ +A ++ L + R++ + +N ++ + S ++
Sbjct: 150 GLNSLE---QLTLEKCNLTSI----PTEALSHLHGLIVL--RLRHLNINAIRDY--SFKR 198
Query: 469 LY----LDFNEIKHLDATAFGNLDVLEL--LSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
LY L+ + +LD L L L LS+ H N+ V + L+ ++LS+N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 523 EISMLTGEQFY--------------------FSFK----LRILNISHNRLRSLPRDVF 556
IS + G + ++F+ LR+LN+S N+L +L VF
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 81/344 (23%)
Query: 46 LRELEITGKDLKFIDPSAFDNIDACYDL-TLKITNTQIEELPSGLFDKIENIEQMTLDLS 104
L ELE+ + ++P AF+N+ ++L TL + + +++ +P G+F + N+ + LD+S
Sbjct: 58 LEELELNENIVSAVEPGAFNNL---FNLRTLGLRSNRLKLIPLGVFTGLSNLTK--LDIS 112
Query: 105 HNKLSVL---------NMATLY---SNVTKLQHLGTTILKDREKXXXXXXXXXXRCNKIT 152
NK+ +L N+ +L +++ + H + L E+ +CN +T
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ------LTLEKCN-LT 165
Query: 153 DLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKXXXXXXXXXXRCNKITDLNGNLFRHLY 212
+ HL IV ++ N N I D + F+ LY
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLN----------------------INAIRDYS---FKRLY 200
Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAM 272
L+ L +S L++ + L L +S + N PY
Sbjct: 201 RLKVLEIS----HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY--------------- 241
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
++ +L L ++NL YN IS I ++ H + RL+EI+L L ++E
Sbjct: 242 ----------LAVRHLVYLRFLNLSYNPISTIEGSMLHELL--RLQEIQLVGGQLAVVEP 289
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
F L L + +S N L +++ + F ++ N+ ++L N +
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 49/263 (18%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF---------- 247
N ++ + F +L+NL+ L L N+L++I L VF L L+IS
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG--VFTGLSNLTKLDISENKIVILLDYM 123
Query: 248 --SLFNSNEFPY------YILNK---NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL 296
L+N YI ++ LN+LE L ++ N+ +I +L +L L + L
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
Query: 297 EYNKISKIHNNLFHFNIHKRLKEIRLSN-NYLELIESDTFYNLK---------------- 339
+ I+ I + + F RLK + +S+ YL+ + + Y L
Sbjct: 184 RHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Query: 340 -------ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
L + LSYN + +I+ + L + I L Q+ + P AF L L L
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301
Query: 393 DLQDNKLKDFNLNVFSNITSKQT 415
++ N+L +VF ++ + +T
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLET 324
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P + LDL NRI+ + + +F L +L L+ N + ++ AF NL L L L
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N + ++ F G+ NL +D+S N+I +L F + L+ L + N L + FS
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 558 N 558
Sbjct: 150 G 150
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 144/355 (40%), Gaps = 60/355 (16%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N+I LN + F SF L+ +ELN N+ E FN
Sbjct: 42 NRIKTLNQDEF----------ASFPHLEELELNENIVSAVEP--------GAFN------ 77
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH--FNIHK 315
NL L L + +N +K I L++L +++ NKI + + +F +N
Sbjct: 78 -----NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN--- 129
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
LK + + +N L I F L L +TL L SI T + +L+ ++ + L I
Sbjct: 130 -LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP---MNLNLSNNYITNLYEN 432
I +F L L L++ D TP LNL++ IT+
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLD-----------TMTPNCLYGLNLTSLSITHC--- 234
Query: 433 DKKQAP-------IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
+ P +Y++ L+LS N I + + L L+++ L ++ ++ AF
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFR 293
Query: 486 NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI 540
L+ L +L++ N + + + F + NL+ + L N ++ + F + R+
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL 348
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
DN ++++ + + L L+ ++L+ + ++ LF L+ + L +N L+ +
Sbjct: 88 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPD 145
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
DTF +L L + L N + S+ +F+ L+++ ++L N++ +++P+AF +L L+ L
Sbjct: 146 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 205
Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
L N L + + + Q + LN N + D + P++ L
Sbjct: 206 YLFANNLSALPTEALAPLRALQY-LRLN------DNPWVCDCRARPLW-AWLQKFRGSSS 257
Query: 453 EVPVNFLQTFAD 464
EVP + Q A
Sbjct: 258 EVPCSLPQRLAG 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 10/190 (5%)
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN-KLKDF 402
I L N + + SF+ N+ + L N + I AF L L +LDL DN +L+
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+ F + T L+L + L + ++ L L +N +Q +P + TF
Sbjct: 96 DPATFHGLGRLHT---LHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDD---TF 148
Query: 463 AD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520
D +L L+L N I + AF L L+ L L N +A V F + L + L
Sbjct: 149 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 208
Query: 521 FNEISMLTGE 530
N +S L E
Sbjct: 209 ANNLSALPTE 218
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
+Q VPV + ++++L N I H+ A +F L +L L N +A + F G
Sbjct: 22 LQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 77
Query: 511 MPNLQIIDLSFN-EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
+ L+ +DLS N ++ + F+ +L L++ L+ L +F + L Y
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--LAALQYLYL 135
Query: 570 QD 571
QD
Sbjct: 136 QD 137
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
DN ++++ + + L L+ ++L+ + ++ LF L+ + L +N L+ +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPD 146
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
DTF +L L + L N + S+ +F+ L+++ ++L N++ +++P+AF +L L+ L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
L N L + + + Q + LN N + D + P++ L
Sbjct: 207 YLFANNLSALPTEALAPLRALQY-LRLN------DNPWVCDCRARPLW-AWLQKFRGSSS 258
Query: 453 EVPVNFLQTFAD 464
EVP + Q A
Sbjct: 259 EVPCSLPQRLAG 270
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 10/190 (5%)
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN-KLKDF 402
I L N + + SF+ N+ + L N + I AF L L +LDL DN +L+
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+ F + T L+L + L + ++ L L +N +Q +P + TF
Sbjct: 97 DPATFHGLGRLHT---LHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDD---TF 149
Query: 463 AD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520
D +L L+L N I + AF L L+ L L N +A V F + L + L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 521 FNEISMLTGE 530
N +S L E
Sbjct: 210 ANNLSALPTE 219
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
+Q VPV + ++++L N I H+ A +F L +L L N +A + F G
Sbjct: 23 LQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78
Query: 511 MPNLQIIDLSFN-EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
+ L+ +DLS N ++ + F+ +L L++ L+ L +F + L Y
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--LAALQYLYL 136
Query: 570 QD 571
QD
Sbjct: 137 QD 138
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
L + +LA+ N + +I +L LT+L Y+ L N++ + N +F + LKE+ L
Sbjct: 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLV 117
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
N L+ + F L L + L++N L+S+ F L N+ + LS+NQ++ + F
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414
L L L L N+LK VF +TS Q
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 446 LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505
L+ N++Q +P + L++L L N+++ L F L L L+L HN + + K
Sbjct: 92 LTGNQLQSLPNGVFDKLTN-LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
F + NL +DLS+N++ L F +L+ L + N+L+S+P VF
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 19/131 (14%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
L L NKL ++ +N+T L IL G+QLQ G+F+ + L+EL + L
Sbjct: 68 LALGGNKLHDISALKELTNLTYL------ILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 57 KFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
+ + FD + +LT L + + Q++ LP G+FDK+ N+ + LDLS+N+L L
Sbjct: 122 QSLPDGVFDKL---TNLTYLNLAHNQLQSLPKGVFDKLTNLTE--LDLSYNQLQSLPEG- 175
Query: 116 LYSNVTKLQHL 126
++ +T+L+ L
Sbjct: 176 VFDKLTQLKDL 186
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 2/173 (1%)
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYS 284
QII NS++ V L + + N+ K L L +L + N ++++ N
Sbjct: 45 QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGV 104
Query: 285 LYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI 344
LT+L + L N++ + + +F + L + L++N L+ + F L L +
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 345 TLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
LSYN L+S+ F L + ++ L NQ+K + F L +L + L DN
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
++ L L N++ ++ + L+ + L L L N+++ L F L L+ L L N +
Sbjct: 65 VRYLALGGNKLHDI--SALKELTN-LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-T 559
+ F + NL ++L+ N++ L F L L++S+N+L+SLP VF T
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 560 IIEKLDISYNQDKIRP 575
++ L + NQ K P
Sbjct: 182 QLKDLRLYQNQLKSVP 197
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 31/152 (20%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N++ L +F L NL+EL L N+LQ L VFD
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQ--SLPDGVFD---------------------- 130
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
L L +L + +N ++++ LT+L ++L YN++ + + F+ +L
Sbjct: 131 -----KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV--FDKLTQL 183
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
K++RL N L+ + F L L I L N
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 39 QGIFN--SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENI 96
+G+F+ + L EL+++ L+ + FD + DL ++ Q++ +P G+FD++ ++
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL--RLYQNQLKSVPDGVFDRLTSL 207
Query: 97 EQMTL 101
+ + L
Sbjct: 208 QYIWL 212
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 274 NNNIKNIRNYSLYNLTS-----LNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE 328
+NNI + R L + + + I LE N I I F + +K+L+ I LSNN +
Sbjct: 12 SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQIS 69
Query: 329 LIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388
+ D F L+ LN++ L N + + + F+ L ++ ++L+ N+I + +AF +L N
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
L L L DNKL+ FS + + QT M+L N +I + +
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQT-MHL-AQNPFICDCH 169
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
I L N IK I P AF L ++DL +N++ + + F + S
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------------- 81
Query: 428 NLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
+ SL L N+I E+P + + L L+ N+I L AF +L
Sbjct: 82 -------------LNSLVLYGNKITELPKSLFEGLFSLQ-LLLLNANKINCLRVDAFQDL 127
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE 523
L LLSL N + + K TF + +Q + L+ N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P I + L N I+ +P + LR++ L N+I L AF L L L L
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N I + K F G+ +LQ++ L+ N+I+ L + F L +L++ N+L+++ + FS
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 226 IIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL 285
+ E+ +N+ + +++L + + + F Y L + + NN I + +
Sbjct: 23 LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPY------KKLRRIDLSNNQISELAPDAF 76
Query: 286 YNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345
L SLN + L NKI+++ +LF + + L+ N + + D F +L LN ++
Sbjct: 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSL--QLLLLNANKINCLRVDAFQDLHNLNLLS 134
Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
L N L++I +F L + + L+ N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 274 NNNIKNIRNYSLYNLTS-----LNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE 328
+NNI + R L + + + I LE N I I F + +K+L+ I LSNN +
Sbjct: 12 SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQIS 69
Query: 329 LIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388
+ D F L+ LN++ L N + + + F+ L ++ ++L+ N+I + +AF +L N
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHN 129
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
L L L DNKL+ FS + + QT M+L N +I + +
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQT-MHL-AQNPFICDCH 169
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
I L N IK I P AF L ++DL +N++ + + F + S
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------------- 81
Query: 428 NLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
+ SL L N+I E+P + + L L+ N+I L AF +L
Sbjct: 82 -------------LNSLVLYGNKITELPKSLFEGLFSLQ-LLLLNANKINXLRVDAFQDL 127
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE 523
L LLSL N + + K TF + +Q + L+ N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P I + L N I+ +P + LR++ L N+I L AF L L L L
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N I + K F G+ +LQ++ L+ N+I+ L + F L +L++ N+L+++ + FS
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 226 IIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL 285
+ E+ +N+ + +++L + + + F Y L + + NN I + +
Sbjct: 23 LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPY------KKLRRIDLSNNQISELAPDAF 76
Query: 286 YNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345
L SLN + L NKI+++ +LF + + L+ N + + D F +L LN ++
Sbjct: 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSL--QLLLLNANKINXLRVDAFQDLHNLNLLS 134
Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
L N L++I +F L + + L+ N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
L + +LA+ N + +I +L LT+L Y+ L N++ + N +F + LKE+ L
Sbjct: 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLV 117
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
N L+ + F L L + L +N L+S+ F L N+ + L NQ++ + F
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITS 412
L L +L L DN+LK VF +TS
Sbjct: 178 DKLTQLKQLSLNDNQLKSVPDGVFDRLTS 206
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 446 LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505
L+ N++Q +P + L++L L N+++ L F L L L L HN + + K
Sbjct: 92 LTGNQLQSLPNGVFDKLTN-LKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK 150
Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
F + NL +DL N++ L F +L+ L+++ N+L+S+P VF
Sbjct: 151 GVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 15/166 (9%)
Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEF---PYYILNKNL 264
++L N++ L+L NKL D+ +L +++ + N+ P + +K L
Sbjct: 59 IQYLPNVRYLALGGNKLH---------DISALKELTNLTYLILTGNQLQSLPNGVFDK-L 108
Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
L+ L + N ++++ + LT+L Y+ L +N++ + +F + L + L N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVF--DKLTNLTRLDLDN 166
Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
N L+ + F L +L ++L+ N LKS+ F L ++ +I L
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N++ L +F L NL+EL L N+LQ L VFD L L + + S P
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQ--SLPDGVFDKLTNLTYLYLYHNQLQS--LPK 150
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
+ +K L L L +DNN ++++ LT L ++L N++ + + + F+ L
Sbjct: 151 GVFDK-LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV--FDRLTSL 207
Query: 318 KEIRLSNNYLELIESDTFY 336
I L NN + SD Y
Sbjct: 208 THIWLLNNPWDCACSDILY 226
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 34/127 (26%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
L L NKL ++ +N+T L IL G+QLQ G+F+ + L+EL + L
Sbjct: 68 LALGGNKLHDISALKELTNLTYL------ILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 57 KFIDPSAFDNI---------------------DACYDLT-LKITNTQIEELPSGLFDKIE 94
+ + FD + D +LT L + N Q++ LP G+FDK+
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 95 NIEQMTL 101
++Q++L
Sbjct: 182 QLKQLSL 188
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
++ L L N++ ++ + L+ + L L L N+++ L F L L+ L L N +
Sbjct: 65 VRYLALGGNKLHDI--SALKELTN-LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-T 559
+ F + NL + L N++ L F L L++ +N+L+SLP VF T
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 560 IIEKLDISYNQDKIRP 575
+++L ++ NQ K P
Sbjct: 182 QLKQLSLNDNQLKSVP 197
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 13/69 (18%)
Query: 38 LQGI-FNSKLRELEITGKDLKFIDPSAFDNIDACYDLT----LKITNTQIEELPSGLFDK 92
+QGI + +R L + G L +I A +LT L +T Q++ LP+G+FDK
Sbjct: 56 VQGIQYLPNVRYLALGGNKLH--------DISALKELTNLTYLILTGNQLQSLPNGVFDK 107
Query: 93 IENIEQMTL 101
+ N++++ L
Sbjct: 108 LTNLKELVL 116
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 25/247 (10%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK--------SIKTTSFKNLN 363
I + L +N L+ + F L +L ++LS N L TTS K L+
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
LSFN + + N F+ L L LD Q + LK ++ FS S + + L++S+
Sbjct: 85 ------LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISH 135
Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL-YLDFNE--IKHLD 480
+ T + N ++ L ++ N QE NFL LR L +LD ++ ++ L
Sbjct: 136 TH-TRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF-YFSFKLR 539
TAF +L L++L++ HNN + + + +LQ++D S N I ++ +F L
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
Query: 540 ILNISHN 546
LN++ N
Sbjct: 252 FLNLTQN 258
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 34/204 (16%)
Query: 390 VKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ---APIYIKSLDL 446
+L+L+ NKL+ VF +T L+LS+N ++ ++ Q +K LDL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQL---TKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDL 85
Query: 447 SNNRIQEVPVNFLQ--------------------TFADSLRKL-YLDFNEIKHLDA--TA 483
S N + + NFL + SLR L YLD + A
Sbjct: 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 484 FGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
F L LE+L + N+ + F + NL +DLS ++ L+ F L++LN
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 543 ISHNRLRSLPRDVFSNTIIEKLDI 566
+SHN SL D F + L +
Sbjct: 206 MSHNNFFSL--DTFPYKCLNSLQV 227
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS--LFNSNEF 255
NK+ L +F L L +LSLS N L S L+ L++SF+ + S+ F
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97
Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKIHNNLFH---- 310
L LE L ++N+K + +S++ +L +L Y+++ + N +F+
Sbjct: 98 ------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 311 -------------------FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351
F + L + LS LE + F +L L + +S+N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 352 KSIKTTSFKNLNNMLNIVLSFNQI 375
S+ T +K LN++ + S N I
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 10/192 (5%)
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
DN ++ + + L L+ ++L+ + ++ LF L+ + L +N L+ +
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNNLQALPD 145
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
+TF +L L + L N + S+ +F+ L+++ ++L N + ++P+AF +L L+ L
Sbjct: 146 NTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTL 205
Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
L N L V + S Q + LN N + D + P++ L
Sbjct: 206 YLFANNLSMLPAEVLVPLRSLQY-LRLN------DNPWVCDCRARPLW-AWLQKFRGSSS 257
Query: 453 EVPVNFLQTFAD 464
EVP N Q A
Sbjct: 258 EVPCNLPQRLAG 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN-KLKDF 402
I L N + + SF++ N+ + L N + I AF L L +LDL DN +L+
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+ F + T L+L + L + ++ L L +N +Q +P N TF
Sbjct: 96 DPTTFRGLGHLHT---LHLDRCGLQELGPGLFRGL-AALQYLYLQDNNLQALPDN---TF 148
Query: 463 AD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520
D +L L+L N I + AF L L+ L L N++A V F + L + L
Sbjct: 149 RDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Query: 521 FNEISMLTGE 530
N +SML E
Sbjct: 209 ANNLSMLPAE 218
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P + + L NRI VP Q+ +L L+L N + +DA AF L +LE L L
Sbjct: 30 PASSQRIFLHGNRISYVPAASFQS-CRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSD 88
Query: 498 N-NIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRIL--------------- 541
N + VV TF G+ +L + L + L F L+ L
Sbjct: 89 NAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTF 148
Query: 542 ----NISH-----NRLRSLPRDVFSN 558
N++H NR+ S+P F
Sbjct: 149 RDLGNLTHLFLHGNRIPSVPEHAFRG 174
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 22/160 (13%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL--------EISFSL 249
N + ++ F L L++L LS N Q+ ++ F L L E+ L
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNA-QLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 250 FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF 309
F + L L++L + +NN++ + + + +L +L ++ L N+I + + F
Sbjct: 124 F-----------RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAF 172
Query: 310 HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
+H L + L N++ + F +L L T+ L N
Sbjct: 173 R-GLHS-LDRLLLHQNHVARVHPHAFRDLGRLMTLYLFAN 210
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
+Q VP S ++++L N I ++ A +F + L +L L N +A + F G
Sbjct: 22 LQAVPTGI----PASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTG 77
Query: 511 MPNLQIIDLSFN-EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
+ L+ +DLS N ++ ++ F L L++ L+ L +F + L Y
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRG--LAALQYLYL 135
Query: 570 QD 571
QD
Sbjct: 136 QD 137
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 297 EYNKISKIHNNLFHF----NIHKRLKEIR---LSNNYLELIESDTFYNLKELNTITLSYN 349
+Y +++NN F I K+L ++R SNN + IE F +N I L+ N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 350 LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
L++++ FK L ++ ++L N+I + ++F+ L ++ L L DN++ F
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 410 ITSKQT------PMNLNLSNNYITNLYE----------NDKKQAPIYIKSLDLSNNRIQE 453
+ S T P N N Y+ L E N + Q P ++K + + + IQ+
Sbjct: 152 LHSLSTLNLLANPFNCNC---YLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQD 208
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 414 QTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF 473
Q L L+NN T L + ++ ++ SNN+I ++ + A + ++ L
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEILLTS 90
Query: 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFY 533
N ++++ F L+ L+ L L N I V +FIG+ +++++ L N+I+ + F
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 534 FSFKLRILNISHN 546
L LN+ N
Sbjct: 151 TLHSLSTLNLLAN 163
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAF-GNLDVLELLSLE 496
P Y L L+NN + + LRK+ N+I ++ AF G V E+L L
Sbjct: 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL-LT 89
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
N + V + F G+ +L+ + L N I+ + + F +R+L++ N++ ++ F
Sbjct: 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Query: 356 TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT 415
TTS K L+ LSFN + + N F+ L L LD Q + LK ++ FS S +
Sbjct: 372 TTSLKYLD------LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRN 422
Query: 416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL-YLDFN 474
+ L++S+ + T + N ++ L ++ N QE NFL LR L +LD +
Sbjct: 423 LIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLS 478
Query: 475 E--IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532
+ ++ L TAF +L L++L++ HNN + + + +LQ++D S N I ++
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 533 -YFSFKLRILNISHN 546
+F L LN++ N
Sbjct: 539 QHFPSSLAFLNLTQN 553
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 47/208 (22%)
Query: 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395
Y ELN + NL S K N+ LSFN ++++ +F + P L LDL
Sbjct: 12 YQCMELNFYKIPDNLPFSTK-----------NLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
+++ E+ Q+ ++ +L L+ N IQ +
Sbjct: 61 RCEIQTI----------------------------EDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI-AVVVKRTFIGMPNL 514
+ + SL+KL + L+ G+L L+ L++ HN I + + F + NL
Sbjct: 93 LGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 515 QIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ +DLS N+I Q + LR+L+
Sbjct: 152 EHLDLSSNKI------QSIYCTDLRVLH 173
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 3 LDLSHNKLSVLNMATLYS----NVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKF 58
LDLS N L L + +S V L ++ Q + S L L +TG ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQS 90
Query: 59 IDPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
+ AF + + L TN +E P G ++ L+++HN + + +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLPEYF 145
Query: 118 SNVTKLQHL 126
SN+T L+HL
Sbjct: 146 SNLTNLEHL 154
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE----------IT 52
L+++HN + + +SN+T L+HL L +++Q I+ + LR L ++
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 53 GKDLKFIDPSAFDNIDACYDLTLK 76
+ FI P AF I + LTL+
Sbjct: 186 LNPMNFIQPGAFKEIRL-HKLTLR 208
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
S + L L FN ++HL + +F + L++L L I + + + +L + L+ N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 525 SMLTGEQFY--------------------FSFK----LRILNISHNRLRS--LPRDVFSN 558
L F F L+ LN++HN ++S LP + FSN
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSN 147
Query: 559 -TIIEKLDISYNQ 570
T +E LD+S N+
Sbjct: 148 LTNLEHLDLSSNK 160
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 465 SLRKL-YLDFNEIKHLDA--TAFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLS 520
SLR L YLD + A F L LE+L + N+ + F + NL +DLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 521 FNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDI 566
++ L+ F L++LN+SHN SL D F + L +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQV 522
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 20/282 (7%)
Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL 329
L + NN+I +R L L + L NKISKIH F+ ++L+++ +S N+L
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA--FSPLRKLQKLYISKNHLVE 116
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK--YIYPNAFVNLP 387
I + +L EL + N ++ + F L NM I + N ++ P AF L
Sbjct: 117 IPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL-YENDKKQAPIYIKSLDL 446
L L + + KL ++ +T L+L +N I + E+ + + +Y L L
Sbjct: 173 KLNYLRISEAKLTGIPKDL------PETLNELHLDHNKIQAIELEDLLRYSKLY--RLGL 224
Query: 447 SNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKR 506
+N+I+ + N +F +LR+L+LD N++ + A +L +L+++ L NNI V
Sbjct: 225 GHNQIRMI-ENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVN 282
Query: 507 TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
F + + +N IS+ Y+ + +RL
Sbjct: 283 DFCPV-GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 35/254 (13%)
Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
+ + ++ + F H L+ ++ S+ L+ + + + + L N + ++
Sbjct: 17 DSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNNDISELRKDD 73
Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAF--------------------VNLP-NLVKLDLQDN 397
FK L ++ +VL N+I I+ AF NLP +LV+L + DN
Sbjct: 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133
Query: 398 KLKDFNLNVFSNITSKQTPMN-LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV 456
+++ VFS + + MN + + N + N P L L+ RI E +
Sbjct: 134 RIRKVPKGVFSGLRN----MNCIEMGGNPLEN-----SGFEPGAFDGLKLNYLRISEAKL 184
Query: 457 NFL-QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
+ + ++L +L+LD N+I+ ++ L L L HN I ++ + +P L+
Sbjct: 185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244
Query: 516 IIDLSFNEISMLTG 529
+ L N++S +
Sbjct: 245 ELHLDNNKLSRVPA 258
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N I++L + F+ L +L L L NK I +++ F KLQ L IS + + E P
Sbjct: 64 NDISELRKDDFKGLQHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYISKN--HLVEIP- 118
Query: 258 YILNKNL-NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
NL ++L L + +N I+ + L ++N I + N + N+ F
Sbjct: 119 ----PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE---NSGFEPGAFDG 171
Query: 317 LK--EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
LK +R+S L I D L EL+ L +N +++I+ + + + L NQ
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 375 IKYIYPNAFVNLPNLVKLDLQDNKL 399
I+ I + LP L +L L +NKL
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKL 253
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
LL L++N+I+ + K F G+ +L + L N+IS + + F KL+ L IS N L +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 552 PRDVFSNTI 560
P ++ S+ +
Sbjct: 118 PPNLPSSLV 126
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFY 533
N+I L F L L L L +N I+ + ++ F + LQ + +S N + +
Sbjct: 64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN--- 120
Query: 534 FSFKLRILNISHNRLRSLPRDVFSN 558
L L I NR+R +P+ VFS
Sbjct: 121 LPSSLVELRIHDNRIRKVPKGVFSG 145
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
L N+N+ NL L L + NN I +I L NLT+LN + L N IS I
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+ L+++ S+N ++ + NL L + +S N + I L N+ ++
Sbjct: 146 -ALSGLTSLQQLSFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 200
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
+ + NQI I P L NL +L L N+LKD L +N+T +L+L+NN I+
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 252
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
NL AP+ + L L N+I + P+ L + L+ NE + D +
Sbjct: 253 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 299
Query: 483 AFGNLDVLELLSLEHNNIA 501
NL L L+L NNI+
Sbjct: 300 PISNLKNLTYLTLYFNNIS 318
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
L N+N+ NL L L + NN I +I L NLT+LN + L N IS I
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+ L+++ S+N ++ + NL L + +S N + I L N+ ++
Sbjct: 146 -ALSGLTSLQQLSFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 200
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
+ + NQI I P L NL +L L N+LKD L +N+T +L+L+NN I+
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 252
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
NL AP+ + L L N+I + P+ L + L+ NE + D +
Sbjct: 253 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 299
Query: 483 AFGNLDVLELLSLEHNNIA 501
NL L L+L NNI+
Sbjct: 300 PISNLKNLTYLTLYFNNIS 318
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 109/266 (40%), Gaps = 63/266 (23%)
Query: 196 RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN--SN 253
N++TDL +L L+ L +S NK+ I V KL LE + N S+
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDIS-------VLAKLTNLESLIATNNQISD 209
Query: 254 EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
P IL L+ L+++ N +K+I +L +LT+L ++L N+IS NL +
Sbjct: 210 ITPLGILTN----LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS----NLAPLSG 259
Query: 314 HKRLKEIRLSNNY---------------LELIES-----DTFYNLKELNTITLSYNLLKS 353
+L E++L N LEL E+ NLK L +TL +N +
Sbjct: 260 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 319
Query: 354 IK--------------------TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
I +S NL N+ + NQI + P NL + +L
Sbjct: 320 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 377
Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNL 419
L D + +N +N++ T N+
Sbjct: 378 LNDQAWTNAPVNYKANVSIPNTVKNV 403
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
L N+N+ NL L L + NN I +I L NLT+LN + L N IS I
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+ L+++ S+N ++ + NL L + +S N + I L N+ ++
Sbjct: 146 -ALSGLTSLQQLNFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 200
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
+ + NQI I P L NL +L L N+LKD L +N+T +L+L+NN I+
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 252
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
NL AP+ + L L N+I + P+ L + L+ NE + D +
Sbjct: 253 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 299
Query: 483 AFGNLDVLELLSLEHNNIA 501
NL L L+L NNI+
Sbjct: 300 PISNLKNLTYLTLYFNNIS 318
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 109/266 (40%), Gaps = 63/266 (23%)
Query: 196 RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN--SN 253
N++TDL +L L+ L +S NK+ I V KL LE + N S+
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDIS-------VLAKLTNLESLIATNNQISD 209
Query: 254 EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
P IL L+ L+++ N +K+I +L +LT+L ++L N+IS NL +
Sbjct: 210 ITPLGILTN----LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS----NLAPLSG 259
Query: 314 HKRLKEIRLSNNY---------------LELIES-----DTFYNLKELNTITLSYNLLKS 353
+L E++L N LEL E+ NLK L +TL +N +
Sbjct: 260 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 319
Query: 354 IK--------------------TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
I +S NL N+ + NQI + P NL + +L
Sbjct: 320 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 377
Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNL 419
L D + +N +N++ T N+
Sbjct: 378 LNDQAWTNAPVNYKANVSIPNTVKNV 403
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
L N+N+ NL L L + NN I +I L NLT+LN + L N IS I
Sbjct: 95 LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 149
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+ L+++ N +L NL L + +S N + I L N+ ++
Sbjct: 150 -ALSGLTSLQQLSFGNQVTDL---KPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 203
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
+ + NQI I P L NL +L L N+LKD L +N+T +L+L+NN I+
Sbjct: 204 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 255
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
NL AP+ + L L N+I + P+ L + L+ NE + D +
Sbjct: 256 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 302
Query: 483 AFGNLDVLELLSLEHNNIA 501
NL L L+L NNI+
Sbjct: 303 PISNLKNLTYLTLYFNNIS 321
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 106/257 (41%), Gaps = 63/257 (24%)
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN--SNE 254
N++TDL +L L+ L +S NK+ I V KL LE + N S+
Sbjct: 163 GNQVTDLKP--LANLTTLERLDISSNKVSDIS-------VLAKLTNLESLIATNNQISDI 213
Query: 255 FPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH 314
P IL L+ L+++ N +K+I +L +LT+L ++L N+IS NL +
Sbjct: 214 TPLGILTN----LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS----NLAPLSGL 263
Query: 315 KRLKEIRLSNNY---------------LELIES-----DTFYNLKELNTITLSYNLLKSI 354
+L E++L N LEL E+ NLK L +TL +N + I
Sbjct: 264 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 323
Query: 355 K--------------------TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
+S NL N+ + NQI + P NL + +L L
Sbjct: 324 SPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
Query: 395 QDNKLKDFNLNVFSNIT 411
D + +N +N++
Sbjct: 382 NDQAWTNAPVNYKANVS 398
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
L N+N+ NL L L + NN I +I L NLT+LN + L N IS I
Sbjct: 96 LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 150
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+ L+++ N +L NL L + +S N + I L N+ ++
Sbjct: 151 -ALSGLTSLQQLSFGNQVTDL---KPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 204
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
+ + NQI I P L NL +L L N+LKD L +N+T +L+L+NN I+
Sbjct: 205 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 256
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
NL AP+ + L L N+I + P+ L + L+ NE + D +
Sbjct: 257 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 303
Query: 483 AFGNLDVLELLSLEHNNIA 501
NL L L+L NNI+
Sbjct: 304 PISNLKNLTYLTLYFNNIS 322
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 63/265 (23%)
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN--SNE 254
N++TDL +L L+ L +S NK+ I V KL LE + N S+
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVSDIS-------VLAKLTNLESLIATNNQISDI 214
Query: 255 FPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH 314
P IL L+ L+++ N +K+I +L +LT+L ++L N+IS NL +
Sbjct: 215 TPLGILTN----LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS----NLAPLSGL 264
Query: 315 KRLKEIRLSNNY---------------LELIES-----DTFYNLKELNTITLSYNLLKSI 354
+L E++L N LEL E+ NLK L +TL +N + I
Sbjct: 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324
Query: 355 K--------------------TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
+S NL N+ + NQI + P NL + +L L
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
Query: 395 QDNKLKDFNLNVFSNITSKQTPMNL 419
D + +N +N++ T N+
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNV 407
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
LSFN + + N F+ L L LD Q + LK ++ FS S + + L++S+ + T +
Sbjct: 404 LSFNGVITMSSN-FLGLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDISHTH-TRV 459
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL-YLDFNE--IKHLDATAFGN 486
N ++ L ++ N QE NFL LR L +LD ++ ++ L TAF +
Sbjct: 460 AFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF-YFSFKLRILNISH 545
L L++L++ HNN + + + +LQ++D S N I ++ +F L LN++
Sbjct: 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Query: 546 N 546
N
Sbjct: 577 N 577
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 47/208 (22%)
Query: 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395
Y ELN + NL S K N+ LSFN ++++ +F + P L LDL
Sbjct: 36 YQCMELNFYKIPDNLPFSTK-----------NLDLSFNPLRHLGSYSFFSFPELQVLDLS 84
Query: 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
+++ E+ Q+ ++ +L L+ N IQ +
Sbjct: 85 RCEIQTI----------------------------EDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI-AVVVKRTFIGMPNL 514
+ + SL+KL + L+ G+L L+ L++ HN I + + F + NL
Sbjct: 117 LGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175
Query: 515 QIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ +DLS N+I Q + LR+L+
Sbjct: 176 EHLDLSSNKI------QSIYCTDLRVLH 197
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 3 LDLSHNKLSVLNMATLYS----NVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKF 58
LDLS N L L + +S V L ++ Q + S L L +TG ++
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQS 114
Query: 59 IDPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
+ AF + + L TN +E P G ++ L+++HN + + +
Sbjct: 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLPEYF 169
Query: 118 SNVTKLQHL 126
SN+T L+HL
Sbjct: 170 SNLTNLEHL 178
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE----------IT 52
L+++HN + + +SN+T L+HL L +++Q I+ + LR L ++
Sbjct: 153 LNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209
Query: 53 GKDLKFIDPSAFDNIDACYDLTLK 76
+ FI P AF I + LTL+
Sbjct: 210 LNPMNFIQPGAFKEIRL-HKLTLR 232
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
S + L L FN ++HL + +F + L++L L I + + + +L + L+ N I
Sbjct: 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112
Query: 525 SMLTGEQFY--------------------FSFK----LRILNISHNRLRS--LPRDVFSN 558
L F F L+ LN++HN ++S LP + FSN
Sbjct: 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSN 171
Query: 559 -TIIEKLDISYNQ 570
T +E LD+S N+
Sbjct: 172 LTNLEHLDLSSNK 184
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 465 SLRKL-YLDFNEIKHLDA--TAFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLS 520
SLR L YLD + A F L LE+L + N+ + F + NL +DLS
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 521 FNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDI 566
++ L+ F L++LN+SHN SL D F + L +
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQV 546
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
L N+N+ NL L L + NN I +I L NLT+LN + L N IS I
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+ L+++ N +L NL L + +S N + I L N+ ++
Sbjct: 146 -ALSGLTSLQQLNFGNQVTDL---KPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
+ + NQI I P L NL +L L N+LKD L +N+T +L+L+NN I+
Sbjct: 200 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 251
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
NL AP+ + L L N+I + P+ L + L+ NE + D +
Sbjct: 252 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 298
Query: 483 AFGNLDVLELLSLEHNNIA 501
NL L L+L NNI+
Sbjct: 299 PISNLKNLTYLTLYFNNIS 317
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + + E+ L N L+ + N K L I LS N + ++ SF N+ +L ++LS
Sbjct: 28 GIPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLK-----DFN-LNVFSNITSKQTPMNLNLSNNY 425
+N+++ I P F L +L L L N + FN L+ S++ P+ + + +
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146
Query: 426 ITNLYENDKKQAPI 439
+++ +++ K+ I
Sbjct: 147 LSDWVKSEYKEPGI 160
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFY 533
N I L +F N+ L L L +N + + RTF G+ +L+++ L N+IS++ F
Sbjct: 64 NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN 123
Query: 534 FSFKLRILNISHNRL 548
L L I N L
Sbjct: 124 DLSALSHLAIGANPL 138
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR 547
DV EL L+ N +V K +L +IDLS N IS L+ + F +L L +S+NR
Sbjct: 32 DVTELY-LDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 548 LRSLPRDVF 556
LR +P F
Sbjct: 90 LRCIPPRTF 98
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 436 QAPIYIKSLD----LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE 491
+ P LD SN ++ +P + + +LYLD N+ L N L
Sbjct: 3 RCPTECTCLDTVVRCSNKGLKVLP----KGIPRDVTELYLDGNQFT-LVPKELSNYKHLT 57
Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
L+ L +N I+ + ++F M L + LS+N + + F LR+L++ N + +
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Query: 552 PRDVFSN-TIIEKLDISYN 569
P F++ + + L I N
Sbjct: 118 PEGAFNDLSALSHLAIGAN 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 272 MDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE 331
+ NN I + N S N+T L + L YN++ I F+ K L+ + L N + ++
Sbjct: 61 LSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR--TFDGLKSLRLLSLHGNDISVVP 118
Query: 332 SDTFYNLKELNTITLSYNLL 351
F +L L+ + + N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
L N+N+ NL L L + NN I +I L NLT+LN + L N IS I
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+ L+++ N +L NL L + +S N + I L N+ ++
Sbjct: 146 -ALSGLTSLQQLNFGNQVTDL---KPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
+ + NQI I P L NL +L L N+LKD L +N+T +L+L+NN I+
Sbjct: 200 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 251
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
NL AP+ + L L N+I + P+ L + L+ NE + D +
Sbjct: 252 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 298
Query: 483 AFGNLDVLELLSLEHNNIA 501
NL L L+L NNI+
Sbjct: 299 PISNLKNLTYLTLYFNNIS 317
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 63/265 (23%)
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN--SNE 254
N++TDL +L L+ L +S NK+ I V KL LE + N S+
Sbjct: 159 GNQVTDLKP--LANLTTLERLDISSNKVSDIS-------VLAKLTNLESLIATNNQISDI 209
Query: 255 FPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH 314
P IL L+ L+++ N +K+I +L +LT+L ++L N+IS NL +
Sbjct: 210 TPLGILTN----LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS----NLAPLSGL 259
Query: 315 KRLKEIRLSNNY---------------LELIES-----DTFYNLKELNTITLSYNLLKSI 354
+L E++L N LEL E+ NLK L +TL +N + I
Sbjct: 260 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 319
Query: 355 K--------------------TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
+S NL N+ + NQI + P NL + +L L
Sbjct: 320 SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
Query: 395 QDNKLKDFNLNVFSNITSKQTPMNL 419
D + +N +N++ T N+
Sbjct: 378 NDQAWTNAPVNYKANVSIPNTVKNV 402
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
L +L L + N ++++ N LTSL Y+NL N++ + N + F+ +LKE+ L+
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV--FDKLTQLKELALN 108
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
N L+ + F L +L + L N LKS+ F L ++ I L N P
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK 352
Y++LE N + + N +F + L ++ L N L+ + + F L L + LS N L+
Sbjct: 32 YLDLETNSLKSLPNGVF--DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITS 412
S+ F L + + L+ NQ++ + F L L L L N+LK VF +TS
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 413 KQ 414
Q
Sbjct: 150 LQ 151
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query: 269 WLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE 328
+L ++ N++K++ N LTSL + L NK+ + N +F N L + LS N L+
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLSTNQLQ 89
Query: 329 LIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388
+ + F L +L + L+ N L+S+ F L + ++ L NQ+K + F L +
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 389 LVKLDLQDNK 398
L + L DN
Sbjct: 150 LQYIWLHDNP 159
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 415 TPMNLNLSNNYITNLYENDKKQAPIYIKS----LDLSNNRIQEVPVNFLQTFADSLRKLY 470
P + S + Y + P I + LDL N ++ +P SL +LY
Sbjct: 1 CPSRCSCSGTTV-ECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELT-SLTQLY 58
Query: 471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGE 530
L N+++ L F L L L+L N + + F + L+ + L+ N++ L
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118
Query: 531 QFYFSFKLRILNISHNRLRSLPRDVF 556
F +L+ L + N+L+S+P VF
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGVF 144
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
NK+ L +F L +L L+LS N+LQ L + VFD +L+ L ++ + S P
Sbjct: 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQ--SLPNGVFDKLTQLKELALNTNQLQS--LPD 117
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
+ +K L L+ L + N +K++ + LTSL YI L N
Sbjct: 118 GVFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 5 LSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDLKF 58
L NKL L +++ +T L +L L +QLQ G+F+ ++L+EL + L+
Sbjct: 59 LGGNKLQSLPNG-VFNKLTSLTYLN---LSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
+ FD + DL ++ Q++ +P G+FD++ +++ + L
Sbjct: 115 LPDGVFDKLTQLKDL--RLYQNQLKSVPDGVFDRLTSLQYIWL 155
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 40 GIFN--SKLRELEITGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENI 96
G+F+ + L +L + G L+ + F+ + + LT L ++ Q++ LP+G+FDK+ +
Sbjct: 46 GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS---LTYLNLSTNQLQSLPNGVFDKLTQL 102
Query: 97 EQMTL 101
+++ L
Sbjct: 103 KELAL 107
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 432 NDKKQAPIYIKSLDLSNN-----RIQEVP---------------VNFLQTFA----DSLR 467
N + P Y LDLS+N R + P +NF+ + A +LR
Sbjct: 32 NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91
Query: 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527
L L N + LD F +L LE+L L +N+I VV + F M LQ + LS N+IS
Sbjct: 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151
Query: 528 TGEQFYFS---FKLRILNISHNRLRSLP 552
E KL +L++S N+L+ LP
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 344 ITLSYNLLKSIKT-TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
+ LS+N L ++ + L N+ +++LS N + +I AFV +PNL LDL N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 403 NLNVFSNITSKQTPMNLNLSNNYIT----NLYENDKKQAPIYIKSLDLSNNRIQEVPVNF 458
+ +FS++ + + L L NN+I N +E+ + +Y LS N+I PV
Sbjct: 104 DEFLFSDLQALEV---LLLYNNHIVVVDRNAFEDMAQLQKLY-----LSQNQISRFPVEL 155
Query: 459 LQTFADSLRKLYL 471
++ + L KL L
Sbjct: 156 IKD-GNKLPKLML 167
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 320 IRLSNNYLELIESD-TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI 378
+ LS+N L + ++ T L L+++ LS+N L I + +F + N+ + LS N + +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT----NLYENDK 434
F +L L L L +N + + N F ++ Q L LS N I+ L ++
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ---KLYLSQNQISRFPVELIKDGN 160
Query: 435 KQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLR-KLYLDFNEIK 477
K + + LDLS+N+++++P+ LQ ++ LYL N ++
Sbjct: 161 KLPKLML--LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 137/333 (41%), Gaps = 32/333 (9%)
Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
N+I + S L L ++ +E I NN F L ++L N +E+
Sbjct: 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--LSSLIILKLDYNQFLQLETG 97
Query: 334 TFYNLKELNTITLS-YNLLKSIKTTSF-KNLNNMLNIVLSFNQIKYIYPNAF-VNLPNLV 390
F L L +TL+ NL ++ + +F K L ++ +VL N IK I P +F +N+
Sbjct: 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157
Query: 391 KLDLQDNKLKDFNLNVFSNITSKQ------TPMNLNLSNNYITNLYENDKKQAPIYIKSL 444
LDL NK+K N K + + L N Y + I +L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
Query: 445 DLSNNRIQE-VPVNFLQTFADS-LRKLYLD--FNEIKHLDATAFGNLDVLELLSLEHNNI 500
DLS N +E + F A + ++ L L +N T F + D LE + +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 501 A----------VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
++K F +L+ + L+ NEI+ + F+ L+ L + N+L+S
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS 337
Query: 551 LPRDVFSN-TIIEKLDISYNQDKIRPGRESNPR 582
+P +F T ++K+ + N P S PR
Sbjct: 338 VPDGIFDRLTSLQKIWLHTN-----PWDCSCPR 365
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 130/338 (38%), Gaps = 82/338 (24%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N+ L F L NL+ L+L+ L L+ N F
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF----------------------- 125
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKI-HNNLFHFNIHK 315
K L +LE L + +NNIK I+ S + N+ + ++L +NK+ I +L +F K
Sbjct: 126 ----KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-GK 180
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
+RLS+ L+++N L + + FKN
Sbjct: 181 HFTLLRLSS-----------ITLQDMNEYWLGWEKCGN----PFKNT------------- 212
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY-------ITN 428
++ LDL N K+ F + + +L LSN+Y TN
Sbjct: 213 ------------SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 429 LYEND----KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAF 484
+ D K +K+ DLS ++I + + F D L +L L NEI +D AF
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAF 319
Query: 485 GNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L L+ L+L+ N + V F + +LQ I L N
Sbjct: 320 WGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 142/300 (47%), Gaps = 15/300 (5%)
Query: 278 KNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYN 337
K ++N ++ +L + +++ IS +F ++ I L +Y I S+TF+
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPA---VFEGLCEMSVESINLQKHYFFNISSNTFHC 276
Query: 338 LKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
L + L+ L + + L+ + +VLS N+ + + + N P+L L ++ N
Sbjct: 277 FSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 398 -KLKDFNLNVFSNITSKQTPMNLNLSNNYI-TNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
K + N+ + + L+LS++ I T+ N + + +++SL+LS N +
Sbjct: 336 TKRLELGTGCLENLENLR---ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDA-TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL 514
+ L L L F +K DA + F NL +L++L+L H+ + + ++ F G+P L
Sbjct: 393 TEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
Query: 515 QIIDLSFNEIS---MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
Q ++L N + +L IL +S L S+ + F++ ++ +D+S+N+
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 9/204 (4%)
Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
+EL + + E L+ L++S +++ L +NL+ L+ L + N +++ +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
L ++L + ++ K+ + F LK + LS++ L++ F L L + L
Sbjct: 398 ECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 347 SYNLLKSI---KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
N KT S + L + +VLSF + I +AF +L + +DL N+L +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 404 LNVFSNITSKQTPMNLNLSNNYIT 427
+ S++ + LNL++N+I+
Sbjct: 517 IEALSHLKG----IYLNLASNHIS 536
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 32/327 (9%)
Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
N+ E L N + I+N + L +L +++L +I IH + F RL + L+
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTA 90
Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI-YPNAF 383
N L + K L + + SI N + ++ L N I I P F
Sbjct: 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
L LD Q+N + + S++ + T ++LNL+ N I + A +S
Sbjct: 151 PT-EKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGNDIAGIEPGAFDSA--VFQS 206
Query: 444 LD-------------LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
L+ L N+ IQ + +L TF D +D +I + V
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSL---WLGTFED------MDDEDISPAVFEGLCEMSV- 256
Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
E ++L+ + + TF LQ +DL+ +S L S L+ L +S N+ +
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS-TLKKLVLSANKFEN 315
Query: 551 LPRDVFSN-TIIEKLDISYNQDKIRPG 576
L + SN + L I N ++ G
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELG 342
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 142/336 (42%), Gaps = 55/336 (16%)
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
+I N TLE L + +N+I +I+ + L K+ NN H+ + +
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL--------KVLDFQNNAIHYLSKEDM 173
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK-------NLNNMLNIVL 370
++ + N ++ L+ N + I+ +F N N+++
Sbjct: 174 SSLQQATNL----------------SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217
Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
F +K N+ + +L +D +D + VF + + + ++NL +Y N+
Sbjct: 218 IFKGLK----NSTIQ--SLWLGTFEDMDDEDISPAVFEGLC-EMSVESINLQKHYFFNIS 270
Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
N ++ LDL+ + E+P + +L+KL L N+ ++L + N L
Sbjct: 271 SN-TFHCFSGLQELDLTATHLSELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSL 327
Query: 491 ELLSLEHNNIAVVVKRTFIG------MPNLQIIDLSFNEI--SMLTGEQFYFSFKLRILN 542
LS++ N KR +G + NL+ +DLS ++I S Q L+ LN
Sbjct: 328 THLSIKGN-----TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 543 ISHNRLRSLPRDVFSNTI-IEKLDISYNQDKIRPGR 577
+S+N SL + F +E LD+++ + K++ +
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 151/356 (42%), Gaps = 47/356 (13%)
Query: 211 LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWL 270
+ L+ L LSFN+ EL ++ ++ L L++S + F+ P N NTL+ L
Sbjct: 339 MRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-NTLQEL 396
Query: 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK-IHNNLFHFNIHKRLKEIRLSNNYLEL 329
+ NN +L N + L ++L +N +S I ++L + +L++++L N LE
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS---KLRDLKLWLNMLEG 453
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
+K L T+ L +N L + N N+ I LS N++ P L NL
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 390 VKLDLQDNKLK----------------DFNLNVF-SNITSKQTPMNLNLSNNYITN---L 429
L L +N D N N+F I + + ++ N+I +
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 430 Y-END--KKQAPIYIKSLDLSNNRIQEV-------PVNFLQ---------TFADSLRKLY 470
Y +ND KK+ L+ R +++ P N TF ++ ++
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 471 LD--FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
LD +N + G++ L +L+L HN+I+ + + L I+DLS N++
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMN-LNLSNNYITNLYENDKKQAPIYIKS---L 444
L LD+ NKL FS S T + LN+S+N P+ +KS L
Sbjct: 222 LQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVG------PIPPLPLKSLQYL 271
Query: 445 DLSNNRI-QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
L+ N+ E+P +FL D+L L L N FG+ +LE L+L NN +
Sbjct: 272 SLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 504 VKR-TFIGMPNLQIIDLSFNEISMLTGEQFY-FSFKLRILNISHN 546
+ T + M L+++DLSFNE S E S L L++S N
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 151/356 (42%), Gaps = 47/356 (13%)
Query: 211 LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWL 270
+ L+ L LSFN+ EL ++ ++ L L++S + F+ P N NTL+ L
Sbjct: 342 MRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-NTLQEL 399
Query: 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK-IHNNLFHFNIHKRLKEIRLSNNYLEL 329
+ NN +L N + L ++L +N +S I ++L + +L++++L N LE
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS---KLRDLKLWLNMLEG 456
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
+K L T+ L +N L + N N+ I LS N++ P L NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 390 VKLDLQDNKLK----------------DFNLNVF-SNITSKQTPMNLNLSNNYITN---L 429
L L +N D N N+F I + + ++ N+I +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 430 Y-END--KKQAPIYIKSLDLSNNRIQEV-------PVNFLQ---------TFADSLRKLY 470
Y +ND KK+ L+ R +++ P N TF ++ ++
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 471 LD--FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
LD +N + G++ L +L+L HN+I+ + + L I+DLS N++
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMN-LNLSNNYITNLYENDKKQAPIYIKS---L 444
L LD+ NKL FS S T + LN+S+N P+ +KS L
Sbjct: 225 LQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVG------PIPPLPLKSLQYL 274
Query: 445 DLSNNRI-QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
L+ N+ E+P +FL D+L L L N FG+ +LE L+L NN +
Sbjct: 275 SLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 504 VKR-TFIGMPNLQIIDLSFNEISMLTGEQFY-FSFKLRILNISHN 546
+ T + M L+++DLSFNE S E S L L++S N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 122/301 (40%), Gaps = 50/301 (16%)
Query: 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
L + LS NYL + +L +L + L N+L+ + + ++L FN
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 375 IKYIYPNAFVNLPNLVKLDLQDNKLKD---------FNLNVF---SNITSKQTPMNLNLS 422
+ P+ N NL + L +N+L NL + +N S P L
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 423 NNYI-----TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLY------L 471
+ I TNL+ N A ++ +S ++ N I +++ D ++K L
Sbjct: 538 RSLIWLDLNTNLF-NGTIPAAMFKQSGKIAANFIAGKRYVYIKN--DGMKKECHGAGNLL 594
Query: 472 DFNEIK----------------------HLDATAFGNLDVLELLSLEHNNIAVVVKRTFI 509
+F I+ H T F N + L + +N ++ + +
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 510 GMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS-LPRDVFSNTIIEKLDISY 568
MP L I++L N+IS ++ L IL++S N+L +P+ + + T++ ++D+S
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 569 N 569
N
Sbjct: 714 N 714
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 25/215 (11%)
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI--KNIRN 282
Q +EL + F F L+L + F SN+ +L +LE+L + N + K +
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 283 YSLYNLTSLNYINLEYNKISKIHNNLF------HFNI-HKRLKEIR-------------- 321
S + TSL Y++L +N + + +N H + H LK++
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 322 -LSNNYLELIESDTFYNLKELNTITLSYNLLKS-IKTTSFKNLNNMLNIVLSFNQIKYIY 379
+S+ + + + F L L + ++ N + F L N+ + LS Q++ +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 380 PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414
P AF +L +L L++ N+LK +F +TS Q
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH---FNIHKRLKE 319
L LE L ++N+K + +S++ L+ NL Y IS H + FN L+
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVF----LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 320 IRLSNN-YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI 378
++++ N + E D F L+ L + LS L+ + T+F +L+++ + ++ NQ+K +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 379 YPNAFVNLPNLVKLDLQDN 397
F L +L K+ L N
Sbjct: 510 PDGIFDRLTSLQKIWLHTN 528
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 465 SLRKL-YLDFNEIKHLDA--TAFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLS 520
SLR L YLD + A F L LE+L + N+ + F + NL +DLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 521 FNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRPGRES 579
++ L+ F L++LN++ N+L+S+P +F T ++K+ + N P S
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN-----PWDCS 533
Query: 580 NPR 582
PR
Sbjct: 534 CPR 536
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 47/208 (22%)
Query: 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395
Y ELN + NL S K N+ LSFN ++++ +F + P L LDL
Sbjct: 12 YQCMELNFYKIPDNLPFSTK-----------NLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
+++ E+ Q+ ++ +L L+ N IQ +
Sbjct: 61 RCEIQTI----------------------------EDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI-AVVVKRTFIGMPNL 514
+ + SL+KL + L+ G+L L+ L++ HN I + + F + NL
Sbjct: 93 LGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 515 QIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ +DLS N+I Q + LR+L+
Sbjct: 152 EHLDLSSNKI------QSIYCTDLRVLH 173
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 3 LDLSHNKLSVLNMATLYS----NVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKF 58
LDLS N L L + +S V L ++ Q + S L L +TG ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQS 90
Query: 59 IDPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
+ AF + + L TN +E P G ++ L+++HN + + +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLPEYF 145
Query: 118 SNVTKLQHL 126
SN+T L+HL
Sbjct: 146 SNLTNLEHL 154
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE----------IT 52
L+++HN + + +SN+T L+HL L +++Q I+ + LR L ++
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 53 GKDLKFIDPSAFDNIDACYDLTLK 76
+ FI P AF I + LTL+
Sbjct: 186 LNPMNFIQPGAFKEIRL-HKLTLR 208
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
S + L L FN ++HL + +F + L++L L I + + + +L + L+ N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 525 SMLTGEQFY--------------------FSFK----LRILNISHNRLRS--LPRDVFSN 558
L F F L+ LN++HN ++S LP + FSN
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSN 147
Query: 559 -TIIEKLDISYNQ 570
T +E LD+S N+
Sbjct: 148 LTNLEHLDLSSNK 160
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 49 LEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
L+++ L+ + P+AF+++ + L + + Q++ +P G+FD++ +++++ L
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQ--VLNMASNQLKSVPDGIFDRLTSLQKIWL 525
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL----DATAFGNLDVL---- 490
I + SL+L+ N+I E+P NF F + + L N++K++ DA + +
Sbjct: 353 IKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSY 411
Query: 491 -ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549
E+ S++ N + F G+ N+ I+LS N+IS E F L +N+ N L
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT 470
Query: 550 SLPRDV-------FSNT-IIEKLDISYNQ 570
+P++ F NT ++ +D+ +N+
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 514 LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR--DVFSNTIIEKLDISYNQD 571
L ++L++N+I+ + F+ ++ L+ +HN+L+ +P D S ++ +D SYN+
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI 414
Query: 572 KIRPGRESNP 581
G+ +P
Sbjct: 415 GSVDGKNFDP 424
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 70/267 (26%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N+IT++ N ++ LS + NKL+ I N+FD S S+ ++ +F Y
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYI---PNIFDA--------KSVSVXSAIDFSY 411
Query: 258 ----YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
+ KN + L D K I N++S INL N+ISK LF +
Sbjct: 412 NEIGSVDGKNFDPL-----DPTPFKGI------NVSS---INLSNNQISKFPKELF--ST 455
Query: 314 HKRLKEIRLSNNYLELI-------ESDTFYNLKELNTITLSYNLLKSIKTTSFK--NLNN 364
L I L N L I E++ F N L +I L +N L + + F+ L
Sbjct: 456 GSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPY 514
Query: 365 MLNIVLSFNQIKYI-----------------------------YPNAFVNLPNLVKLDLQ 395
++ I LS+N +P P+L +L +
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574
Query: 396 DNKLKDFNLNVFSNITSKQTPMNLNLS 422
N ++ N + NI+ N N+S
Sbjct: 575 SNDIRKVNEKITPNISVLDIKDNPNIS 601
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE----------IT 52
L+++HN + + +SN+T L+HL L +++Q I+ + LR L ++
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 53 GKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
+ FI P AF I L + Q++ +P G+FD++ +++++ L
Sbjct: 186 LNPMNFIQPGAFKEIRL---KELALDTNQLKSVPDGIFDRLTSLQKIWL 231
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 47/208 (22%)
Query: 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395
Y ELN + NL S K N+ LSFN ++++ +F + P L LDL
Sbjct: 12 YQCMELNFYKIPDNLPFSTK-----------NLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
+++ E+ Q+ ++ +L L+ N IQ +
Sbjct: 61 RCEIQTI----------------------------EDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI-AVVVKRTFIGMPNL 514
+ + SL+KL + L+ G+L L+ L++ HN I + + F + NL
Sbjct: 93 LGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 515 QIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ +DLS N+I Q + LR+L+
Sbjct: 152 EHLDLSSNKI------QSIYCTDLRVLH 173
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
S + L L FN ++HL + +F + L++L L I + + + +L + L+ N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 525 SMLTGEQFY--------------------FSFK----LRILNISHNRLRS--LPRDVFSN 558
L F F L+ LN++HN ++S LP + FSN
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSN 147
Query: 559 -TIIEKLDISYNQ 570
T +E LD+S N+
Sbjct: 148 LTNLEHLDLSSNK 160
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 196 RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ-LLEISFSLFNSNE 254
RC +I + ++ L +L L L+ N +Q + L + F LQ L+ + +L +
Sbjct: 61 RC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLEN 117
Query: 255 FPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKIHNN---LFH 310
FP +L TL+ L + +N I++ + + NLT+L +++L NKI I+ + H
Sbjct: 118 FPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
+ + LS N + I+ F ++ L + L N LKS+ F L ++ I L
Sbjct: 174 -QMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWL 231
Query: 371 SFNQIKYIYP 380
N P
Sbjct: 232 HTNPWDCSCP 241
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 3 LDLSHNKLSVLNMATLYS----NVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKF 58
LDLS N L L + +S V L ++ Q + S L L +TG ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQS 90
Query: 59 IDPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
+ AF + + L TN +E P G ++ L+++HN + + +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLPEYF 145
Query: 118 SNVTKLQHL 126
SN+T L+HL
Sbjct: 146 SNLTNLEHL 154
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 36/179 (20%)
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
I LS+N LK +K+ SF N + + + LS +I+ I A+ L +L L L N ++ F+
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 404 LNVFSNITSKQ---------------------TPMNLNLSNNYITNLYENDKKQAPIYIK 442
FS +TS + T LN+++N+I + + P Y
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC------KLPAYFS 145
Query: 443 SL------DLSNNRIQEVPVNFLQTFADSLR---KLYLDFNEIKHLDATAFGNLDVLEL 492
+L DLS N IQ + VN LQ ++ + L + N I + AF + + EL
Sbjct: 146 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 204
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 141/346 (40%), Gaps = 68/346 (19%)
Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267
F L N+ +SL+ ++ +E F ++ L ++ F + + P+ K+L
Sbjct: 276 FHCLANVSAMSLAGVSIKYLEDVPKHFK-WQSLSIIRCQLKQFPTLDLPFL---KSLT-- 329
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
L M+ +I ++ L SL+Y++L N +S + L+ + LS N
Sbjct: 330 --LTMNKGSI----SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG- 382
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNL 386
+I S F L+EL + ++ LK + + ++F +L +L + +S+ K + F+ L
Sbjct: 383 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 442
Query: 387 PNLVKLDLQDNKLKDFNL-NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLD 445
+L L + N KD L NVF+N T NL LD
Sbjct: 443 TSLNTLKMAGNSFKDNTLSNVFANTT------NLTF----------------------LD 474
Query: 446 LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505
LS +++++ F L L+LL++ HNN+ +
Sbjct: 475 LSKCQLEQISWG-------------------------VFDTLHRLQLLNMSHNNLLFLDS 509
Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
+ + +L +D SFN I G +F L N+++N + +
Sbjct: 510 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 555
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE---ITGKDLKFI 59
+DLS N L +L + +SN ++LQ L + + + ++ L L +TG ++
Sbjct: 32 IDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 90
Query: 60 DPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
P +F + + +L T +E P G + I L+++HN + + +S
Sbjct: 91 SPGSFSGLTSLENLVAVETKLASLESFPIG-----QLITLKKLNVAHNFIHSCKLPAYFS 145
Query: 119 NVTKLQHL 126
N+T L H+
Sbjct: 146 NLTNLVHV 153
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
+ ++ +VP S + + L FN +K L + +F N L+ L L I + +
Sbjct: 15 DQKLSKVP----DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 70
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDI 566
+ G+ +L + L+ N I + F L L +L SL I ++KL++
Sbjct: 71 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 130
Query: 567 SYN 569
++N
Sbjct: 131 AHN 133
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 51/194 (26%)
Query: 434 KKQAPIYIKSLDLSNNRIQ-EVPVNFLQTFADSLRKLYLDFN-------------EIKHL 479
KK A + LDLS N + ++ +SLR L L FN E++HL
Sbjct: 340 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 399
Query: 480 DA-----------TAFGNLDVLELLSLEHNNIAVVVKRTFIGMP---------------- 512
D +AF +L+ L L + + N + F+G+
Sbjct: 400 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 459
Query: 513 ---------NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IE 562
NL +DLS ++ ++ F +L++LN+SHN L L ++ +
Sbjct: 460 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 519
Query: 563 KLDISYNQDKIRPG 576
LD S+N+ + G
Sbjct: 520 TLDCSFNRIETSKG 533
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE----------IT 52
L+++HN + + +SN+T L+HL L +++Q I+ + LR L ++
Sbjct: 130 LNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 186
Query: 53 GKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
+ FI P AF I L + Q++ +P G+FD++ +++++ L
Sbjct: 187 LNPMNFIQPGAFKEIRL---KELALDTNQLKSVPDGIFDRLTSLQKIWL 232
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 34/245 (13%)
Query: 241 QLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
Q +E++F N P+ KNL+ L W N ++++ +YS ++ L ++L +
Sbjct: 14 QCMELNFYKIPDN-LPFS--TKNLD-LSW-----NPLRHLGSYSFFSFPELQVLDLSRCE 64
Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK 360
I I + + H L + L+ N ++ + F L L + L S++
Sbjct: 65 IQTIEDGAYQSLSH--LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 122
Query: 361 NLNNMLNIVLSFNQIK-YIYPNAFVNLPNLVKLDLQDNKLKDF---NLNVFSNIT----- 411
+L + + ++ N I+ + P F NL NL LDL NK++ +L V +
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 182
Query: 412 --SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469
PMN + I +K L L N+++ VP SL+K+
Sbjct: 183 LDLSLNPMNFIQPGAF-----------KEIRLKELALDTNQLKSVPDGIFDRLT-SLQKI 230
Query: 470 YLDFN 474
+L N
Sbjct: 231 WLHTN 235
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 385 NLPNLVK-LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
NLP K LDL N L+ F + Q L+LS I + E+ Q+ ++ +
Sbjct: 26 NLPFSTKNLDLSWNPLRHLGSYSFFSFPELQV---LDLSRCEIQTI-EDGAYQSLSHLST 81
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI-AV 502
L L+ N IQ + + + SL+KL + L+ G+L L+ L++ HN I +
Sbjct: 82 LILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 140
Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ F + NL+ +DLS N+I Q + LR+L+
Sbjct: 141 KLPEYFSNLTNLEHLDLSSNKI------QSIYCTDLRVLH 174
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 3 LDLSHNKLSVLNMATLYS----NVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKF 58
LDLS N L L + +S V L ++ Q + S L L +TG ++
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQS 91
Query: 59 IDPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
+ AF + + L TN +E P G ++ L+++HN + + +
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLPEYF 146
Query: 118 SNVTKLQHL 126
SN+T L+HL
Sbjct: 147 SNLTNLEHL 155
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
L L N + + +F P LQ++DLS EI + + L L ++ N ++SL
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 553 RDVFSN 558
FS
Sbjct: 94 LGAFSG 99
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 36/179 (20%)
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
I LS+N LK +K+ SF N + + + LS +I+ I A+ L +L L L N ++ F+
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 404 LNVFSNITSKQ---------------------TPMNLNLSNNYITNLYENDKKQAPIYIK 442
FS +TS + T LN+++N+I + + P Y
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC------KLPAYFS 150
Query: 443 SL------DLSNNRIQEVPVNFLQTFADSLR---KLYLDFNEIKHLDATAFGNLDVLEL 492
+L DLS N IQ + VN LQ ++ + L + N I + AF + + EL
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 141/346 (40%), Gaps = 68/346 (19%)
Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267
F L N+ +SL+ ++ +E F ++ L ++ F + + P+ K+L
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKHFK-WQSLSIIRCQLKQFPTLDLPFL---KSLT-- 334
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
L M+ +I ++ L SL+Y++L N +S + L+ + LS N
Sbjct: 335 --LTMNKGSI----SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG- 387
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNL 386
+I S F L+EL + ++ LK + + ++F +L +L + +S+ K + F+ L
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 387 PNLVKLDLQDNKLKDFNL-NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLD 445
+L L + N KD L NVF+N T NL LD
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTT------NLTF----------------------LD 479
Query: 446 LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505
LS +++++ F L L+LL++ HNN+ +
Sbjct: 480 LSKCQLEQISWG-------------------------VFDTLHRLQLLNMSHNNLLFLDS 514
Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
+ + +L +D SFN I G +F L N+++N + +
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE---ITGKDLKFI 59
+DLS N L +L + +SN ++LQ L + + + ++ L L +TG ++
Sbjct: 37 IDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 60 DPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
P +F + + +L T +E P G + I L+++HN + + +S
Sbjct: 96 SPGSFSGLTSLENLVAVETKLASLESFPIG-----QLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 119 NVTKLQHL 126
N+T L H+
Sbjct: 151 NLTNLVHV 158
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
+ ++ +VP S + + L FN +K L + +F N L+ L L I + +
Sbjct: 20 DQKLSKVP----DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDI 566
+ G+ +L + L+ N I + F L L +L SL I ++KL++
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Query: 567 SYN 569
++N
Sbjct: 136 AHN 138
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 51/194 (26%)
Query: 434 KKQAPIYIKSLDLSNNRIQ-EVPVNFLQTFADSLRKLYLDFN-------------EIKHL 479
KK A + LDLS N + ++ +SLR L L FN E++HL
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404
Query: 480 DA-----------TAFGNLDVLELLSLEHNNIAVVVKRTFIGMP---------------- 512
D +AF +L+ L L + + N + F+G+
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464
Query: 513 ---------NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IE 562
NL +DLS ++ ++ F +L++LN+SHN L L ++ +
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524
Query: 563 KLDISYNQDKIRPG 576
LD S+N+ + G
Sbjct: 525 TLDCSFNRIETSKG 538
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE----------IT 52
L+++HN + + +SN+T L+HL L +++Q I+ + LR L ++
Sbjct: 131 LNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 187
Query: 53 GKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
+ FI P AF I L + Q++ +P G+FD++ +++++ L
Sbjct: 188 LNPMNFIQPGAFKEIRL---KELALDTNQLKSVPDGIFDRLTSLQKIWL 233
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 34/245 (13%)
Query: 241 QLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
Q +E++F N P+ KNL+ L W N ++++ +YS ++ L ++L +
Sbjct: 15 QCMELNFYKIPDN-LPFS--TKNLD-LSW-----NPLRHLGSYSFFSFPELQVLDLSRCE 65
Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK 360
I I + + H L + L+ N ++ + F L L + L S++
Sbjct: 66 IQTIEDGAYQSLSH--LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 123
Query: 361 NLNNMLNIVLSFNQIK-YIYPNAFVNLPNLVKLDLQDNKLKDF---NLNVFSNIT----- 411
+L + + ++ N I+ + P F NL NL LDL NK++ +L V +
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 183
Query: 412 --SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469
PMN + I +K L L N+++ VP SL+K+
Sbjct: 184 LDLSLNPMNFIQPGAF-----------KEIRLKELALDTNQLKSVPDGIFDRLT-SLQKI 231
Query: 470 YLDFN 474
+L N
Sbjct: 232 WLHTN 236
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 385 NLPNLVK-LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
NLP K LDL N L+ F + Q L+LS I + E+ Q+ ++ +
Sbjct: 27 NLPFSTKNLDLSWNPLRHLGSYSFFSFPELQV---LDLSRCEIQTI-EDGAYQSLSHLST 82
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI-AV 502
L L+ N IQ + + + SL+KL + L+ G+L L+ L++ HN I +
Sbjct: 83 LILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 141
Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ F + NL+ +DLS N+I Q + LR+L+
Sbjct: 142 KLPEYFSNLTNLEHLDLSSNKI------QSIYCTDLRVLH 175
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 3 LDLSHNKLSVLNMATLYS----NVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKF 58
LDLS N L L + +S V L ++ Q + S L L +TG ++
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQS 92
Query: 59 IDPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
+ AF + + L TN +E P G ++ L+++HN + + +
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLPEYF 147
Query: 118 SNVTKLQHL 126
SN+T L+HL
Sbjct: 148 SNLTNLEHL 156
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
L L N + + +F P LQ++DLS EI + + L L ++ N ++SL
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 553 RDVFSN 558
FS
Sbjct: 95 LGAFSG 100
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+KSLDLSNNRI + + LQ + L+ L L N I ++ +F +L LE L L +N +
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF--KLRILNISH-NRLRSLPRDVFS 557
+ + F + +L ++L N L GE FS KL+IL + + + + R F+
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 558 N-TIIEKLDI 566
T +E+L+I
Sbjct: 146 GLTFLEELEI 155
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Query: 270 LAMDNNNIKNIRNYSLYNLTS-----LNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
L+ D N I + SL ++ S + ++L N+I+ I N+ ++ L+ + L++
Sbjct: 2 LSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVN--LQALVLTS 59
Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFV 384
N + IE D+F +L L + LSYN L ++ ++ FK L+++ + L N K + +
Sbjct: 60 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 119
Query: 385 NLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
+ +L KL + L+ N++ F+ I K
Sbjct: 120 S--HLTKLQI----LRVGNMDTFTKIQRK 142
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N+IT ++ + + NLQ L L+ N + IE E SFS
Sbjct: 36 NRITYISNSDLQRCVNLQALVLTSNGINTIE---------------EDSFS--------- 71
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
+L +LE L + N + N+ + L+SL ++NL N + F+ +L
Sbjct: 72 -----SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKL 125
Query: 318 KEIRLSN-NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
+ +R+ N + I+ F L L + + + L+S + S K++ N+ +++L Q
Sbjct: 126 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-H 184
Query: 377 YIYPNAFVNLPNLVK-LDLQDNKLKDFNLNVFSNITSKQT 415
+ FV++ + V+ L+L+D L F+ FS +++ +T
Sbjct: 185 ILLLEIFVDVTSSVECLELRDTDLDTFH---FSELSTGET 221
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 73 LTLKITNTQIEELPSGLFDKIENIEQMTL 101
L LKI+ Q++ +P G+FD++ +++++ L
Sbjct: 476 LVLKISRNQLKSVPDGIFDRLTSLQKIWL 504
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE----------IT 52
L+++HN + + +SN+T L+HL L +++Q I+ + LR L ++
Sbjct: 130 LNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 186
Query: 53 GKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
+ FI P AF I L + Q++ +P G+FD++ +++++ L
Sbjct: 187 LNPMNFIQPGAFKEIRL---KELALDTNQLKSVPDGIFDRLTSLQKIWL 232
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395
Y +ELN + NL S K N+ LSFN ++++ +F + P L LDL
Sbjct: 13 YQCEELNFYKIPDNLPFSTK-----------NLDLSFNPLRHLGSYSFFSFPELQVLDLS 61
Query: 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
+++ E+ Q+ ++ +L L+ N IQ +
Sbjct: 62 RCEIQTI----------------------------EDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI-AVVVKRTFIGMPNL 514
+ + SL+KL + L+ G+L L+ L++ HN I + + F + NL
Sbjct: 94 LGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 152
Query: 515 QIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ +DLS N+I Q + LR+L+
Sbjct: 153 EHLDLSSNKI------QSIYCTDLRVLH 174
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
S + L L FN ++HL + +F + L++L L I + + + +L + L+ N I
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 525 SMLTGEQFY--------------------FSFK----LRILNISHNRLRS--LPRDVFSN 558
L F F L+ LN++HN ++S LP + FSN
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSN 148
Query: 559 -TIIEKLDISYNQ 570
T +E LD+S N+
Sbjct: 149 LTNLEHLDLSSNK 161
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 196 RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ-LLEISFSLFNSNE 254
RC +I + ++ L +L L L+ N +Q + L + F LQ L+ + +L +
Sbjct: 62 RC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLEN 118
Query: 255 FPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKIHNN---LFH 310
FP +L TL+ L + +N I++ + + NLT+L +++L NKI I+ + H
Sbjct: 119 FPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 174
Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
+ + LS N + I+ F ++ L + L N LKS+ F L ++ I L
Sbjct: 175 -QMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWL 232
Query: 371 SFNQIKYIYP 380
N P
Sbjct: 233 HTNPWDCSCP 242
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 3 LDLSHNKLSVLNMATLYS----NVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKF 58
LDLS N L L + +S V L ++ Q + S L L +TG ++
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQS 91
Query: 59 IDPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
+ AF + + L TN +E P G ++ L+++HN + + +
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLPEYF 146
Query: 118 SNVTKLQHL 126
SN+T L+HL
Sbjct: 147 SNLTNLEHL 155
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE----------IT 52
L+++HN + + +SN+T L+HL L +++Q I+ + LR L ++
Sbjct: 131 LNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 187
Query: 53 GKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
+ FI P AF I L + Q++ +P G+FD++ +++++ L
Sbjct: 188 LNPMNFIQPGAFKEIRL---KELALDTNQLKSVPDGIFDRLTSLQKIWL 233
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 48/221 (21%)
Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNA 382
S +E++ + T Y ELN + NL S K N+ LSFN ++++ +
Sbjct: 2 SEPCVEVVPNIT-YQCMELNFYKIPDNLPFSTK-----------NLDLSFNPLRHLGSYS 49
Query: 383 FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK 442
F + P L LDL +++ E+ Q+ ++
Sbjct: 50 FFSFPELQVLDLSRCEIQTI----------------------------EDGAYQSLSHLS 81
Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI-A 501
+L L+ N IQ + + + SL+KL + L+ G+L L+ L++ HN I +
Sbjct: 82 TLILTGNPIQSLALGAFSGLS-SLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQS 140
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ F + NL+ +DLS N+I Q + LR+L+
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKI------QSIYCTDLRVLH 175
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
S + L L FN ++HL + +F + L++L L I + + + +L + L+ N I
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 525 SMLTGEQFY--------------------FSFK----LRILNISHNRLRS--LPRDVFSN 558
L F F L+ LN++HN ++S LP + FSN
Sbjct: 91 QSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSN 149
Query: 559 -TIIEKLDISYNQ 570
T +E LD+S N+
Sbjct: 150 LTNLEHLDLSSNK 162
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 3 LDLSHNKLSVLNMATLYS----NVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKF 58
LDLS N L L + +S V L ++ Q + S L L +TG ++
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQS 92
Query: 59 IDPSAFDNIDACYDLTLKITN-TQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
+ AF + + L TN +E P G ++ L+++HN + + +
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLPEYF 147
Query: 118 SNVTKLQHL 126
SN+T L+HL
Sbjct: 148 SNLTNLEHL 156
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 196 RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ-LLEISFSLFNSNE 254
RC +I + ++ L +L L L+ N +Q + L + F LQ L+ + +L +
Sbjct: 63 RC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVALETNLASLEN 119
Query: 255 FPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKIHNN---LFH 310
FP +L TL+ L + +N I++ + + NLT+L +++L NKI I+ + H
Sbjct: 120 FPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 175
Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
+ + LS N + I+ F ++ L + L N LKS+ F L ++ I L
Sbjct: 176 -QMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWL 233
Query: 371 SFNQIKYIYP 380
N P
Sbjct: 234 HTNPWDCSCP 243
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
NK+ L +F L L +LSLS N++Q L VFD KL +L + + S P
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLHENKLQS--LPN 93
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
+ +K L L+ LA+D N +K++ + LTSL I L N
Sbjct: 94 GVFDK-LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + L +N L+ + F L +L ++LS N ++S+ F L + + L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414
N+++ + F L L +L L N+LK +F +TS Q
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 462 FADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
S +L L+ N+++ L F L L LSL N I + F + L I+ L
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRPGRESN 580
N++ L F +L+ L + N+L+S+P +F T ++K+ + N P S
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-----PWDCSC 140
Query: 581 PR 582
PR
Sbjct: 141 PR 142
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELL 493
Q ++D + R VP + + LYL N+I L+ F +L L+ L
Sbjct: 14 PSQCSCSGTTVDCRSKRHASVPAGI----PTNAQILYLHDNQITKLEPGVFDSLINLKEL 69
Query: 494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553
L N + + F + L ++DL N++++L F L+ L + N+L LPR
Sbjct: 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR 129
Query: 554 DVFSNTIIEKLDISYNQDKIRP 575
+ T + L + NQ K P
Sbjct: 130 GIERLTHLTHLALDQNQLKSIP 151
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD---------------------V 236
N+IT L +F L NL+EL L N+L + + VFD V
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPV--GVFDSLTQLTVLDLGTNQLTVLPSAV 107
Query: 237 FEKLQLLEISFSLFNS-NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYIN 295
F++L L+ F N E P I + L L LA+D N +K+I + + L+SL +
Sbjct: 108 FDRLVHLKELFMCCNKLTELPRGI--ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165
Query: 296 L 296
L
Sbjct: 166 L 166
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEN 432
NQI + P F +L NL +L L N+L + VF ++T L+L N +T L
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV---LDLGTNQLTVLPSA 106
Query: 433 --DKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
D+ +++K L + N++ E+P + L L LD N++K + AF L L
Sbjct: 107 VFDRL---VHLKELFMCCNKLTELPRGIERL--THLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N Q+ ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNQLTELPAGLLNGLENLDTLLL 179
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 12/180 (6%)
Query: 387 PNLVK----LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK 442
P+L K L L +N L F+L T LNL +T L + P+ +
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRL---TQLNLDRCELTKLQVDGT--LPV-LG 80
Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502
+LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 81 TLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIE 562
+ P L+ + L+ N+++ L L L + N L ++P+ F + ++
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
+L T L +NL+ +++K+ + L + LS+N L+ + L L
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVD----GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
+ +S+N L S+ + + L + + L N++K + P P L KL L +N+L +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 404 LNVFSNI 410
+ + +
Sbjct: 165 AGLLNGL 171
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N Q+ ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNQLTELPAGLLNGLENLDTLLL 179
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N+++ L L L + N L ++P+ F + +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 561 IE 562
+
Sbjct: 197 LP 198
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
+L T L +NL+ +++K+ + L + LS+N L+ + L L
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVD----GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
+ +S+N L S+ + + L + + L N++K + P P L KL L +N+L +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 404 LNVFSNI 410
+ + +
Sbjct: 165 AGLLNGL 171
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 512 PNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-SNTIIEKLDISYNQ 570
P + + LS N IS L F +LR+L +SHNR+RSL VF N +E LD+S+N+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 466 LRKLYLDFNEIKHLDATAF--GNLDVLELLSLEHNNI-AVVVKRTFIGMPNLQIIDLSFN 522
L+ L L N +K+ A N+ LE L + N++ + RT ++ +++LS N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 523 EISMLTGEQF-YFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP 575
MLTG F K+++L++ +NR+ S+P+DV +++L+++ NQ K P
Sbjct: 439 ---MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 362 LNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITS-KQTPMNLN 420
L + ++L N +K + A + N+ L+ D L N + + + ++ + LN
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD 480
LS+N +T + + P +K LDL NNRI +P + T +L++L + N++K +
Sbjct: 435 LSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSIPKDV--THLQALQELNVASNQLKSVP 489
Query: 481 ATAFGNLDVLELLSLEHN 498
F L L+ + L N
Sbjct: 490 DGVFDRLTSLQYIWLHDN 507
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
LSL N+I+ + + L+++ LS N I L F F+ L L++SHNRL+++
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI- 115
Query: 553 RDVFSNTIIEKLDISYNQDKIRP 575
+ LD+S+N + P
Sbjct: 116 -SCCPMASLRHLDLSFNDFDVLP 137
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL 329
L++ N+I +R + L+ L + L +N+I + ++F FN + L+ + +S+N L+
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN--QDLEYLDVSHNRLQN 114
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS---FNQIKYIYPNAFVNL 386
I +L+ L+ +++L K F NL + + LS F Q+ + P A ++L
Sbjct: 115 ISCCPMASLRHLDLSFNDFDVLPVCK--EFGNLTKLTFLGLSAAKFRQLD-LLPVAHLHL 171
Query: 387 PNLVKLDLQDNKLK 400
+ + LDL +K
Sbjct: 172 -SCILLDLVSYHIK 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N Q+ ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNQLTELPAGLLNGLENLDTLLL 179
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N+++ L L L + N L ++P+ F + +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 561 I 561
+
Sbjct: 197 L 197
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
+L T L +NL+ +++K+ + L + LS+N L+ + L L
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVD----GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
+ +S+N L S+ + + L + + L N++K + P P L KL L +N+L +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 404 LNVFSNI 410
+ + +
Sbjct: 165 AGLLNGL 171
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N Q+ ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNQLTELPAGLLNGLENLDTLLL 179
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N+++ L L L + N L ++P+ F + +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 561 I 561
+
Sbjct: 197 L 197
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
+L T L +NL+ +++K+ + L + LS+N L+ + L L
Sbjct: 50 TLMPYTRLTQLNLDRCELTKLQVD----GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
+ +S+N L S+ + + L + + L N++K + P P L KL L +N+L +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 404 LNVFSNI 410
+ + +
Sbjct: 165 AGLLNGL 171
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYN-LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
L+T E L +++N + I + L+ L L + L+ N+++ I N F H ++E++L
Sbjct: 29 LHTTE-LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH--IQELQL 85
Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
N ++ I + F L +L T+ L N + + SF++LN++ ++ L+ N
Sbjct: 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 319 EIRLSNNYLELIESDT-FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
E+ L++N L I SD F L L + L N L I+ +F+ +++ + L N+IK
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
I F+ L L L+L DN++ F ++ S + LNL++N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS---LNLASN 136
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN 418
F L +++ + L NQ+ I PNAF ++ +L L +NK+K+ + +F + +T
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT--- 106
Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNF---LQTFADSLRKLYLDFNE 475
LNL +N I+ + + + SL+L++N P N L FA+ LRK L+
Sbjct: 107 LNLYDNQISCVMPGSFEHL-NSLTSLNLASN-----PFNCNCHLAWFAEWLRKKSLNGGA 160
Query: 476 IK 477
+
Sbjct: 161 AR 162
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P++ L L++N + + + L L KL L N++ ++ AF ++ L L
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
N I + + F+G+ L+ ++L N+IS + F L LN++ N
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 443 SLDLSNNRIQEVPVNF-LQTFADSLRKLYLDFNEIKHLDATA-FGNLDVLELLSLEHNNI 500
++D + ++E+P + L T +L L+ NE+ + + FG L L L L+ N +
Sbjct: 12 TVDCTGRGLKEIPRDIPLHT-----TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
+ F G ++Q + L N+I ++ + F +L+ LN+ N++ + F
Sbjct: 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 125/293 (42%), Gaps = 19/293 (6%)
Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKIS---KIHNNLFHFNIHKRLKEIRLSNNYLELIE 331
+ + I + + YN TSL + ++ NK S KI F F L +I + ++ E I+
Sbjct: 73 DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFXFC--SELTDIPILDSVTE-ID 129
Query: 332 SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
S+ F++ +EL+T+T+ + S+ F ++ + L + + I AF L +
Sbjct: 130 SEAFHHCEELDTVTIPEG-VTSVADGXFSYCYSLHTVTLP-DSVTAIEERAFTGT-ALTQ 186
Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN-LYENDKKQAPIYIKSLDLSNNR 450
+ + K+ N FS + T + + S I N LYE I+ +
Sbjct: 187 IHIP-AKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDP 245
Query: 451 IQEVP--VNFLQTFA-DSLRKLYL--DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505
++P V ++T A DS L + + + AF N L+ + + I + +
Sbjct: 246 AFKIPNGVARIETHAFDSCAYLASVKXPDSVVSIGTGAFXNCPALQDIEFS-SRITELPE 304
Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
F G +L+ ID+ I+ + + F +L + I + + +P FSN
Sbjct: 305 SVFAGCISLKSIDIP-EGITQILDDAFAGCEQLERIAIP-SSVTKIPESAFSN 355
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T+ + L N+I+K+ +F + +L + L NN L ++ + F L +L ++L+
Sbjct: 38 TTTQVLYLYDNQITKLEPGVF--DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 95
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFN 373
N LKSI +F NL ++ +I L N
Sbjct: 96 NQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
++P FD + L L N Q+ LP+G+FDK+ + Q++L+ N+L + +
Sbjct: 53 LEPGVFDRLTQLTRLDLD--NNQLTVLPAGVFDKLTQLTQLSLN--DNQLKSIPRGA-FD 107
Query: 119 NVTKLQHL 126
N+ L H+
Sbjct: 108 NLKSLTHI 115
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
K L + G ++L L N I + F + L +DL N++++L F
Sbjct: 27 KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 537 KLRILNISHNRLRSLPRDVFSN 558
+L L+++ N+L+S+PR F N
Sbjct: 87 QLTQLSLNDNQLKSIPRGAFDN 108
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N + ++ F L + + L NQ+ + F L L +L L DN+LK F
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
Query: 409 NITS 412
N+ S
Sbjct: 108 NLKS 111
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 40 GIFN--SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIE 97
G+F+ ++L L++ L + FD + L+L + Q++ +P G FD ++++
Sbjct: 56 GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL--NDNQLKSIPRGAFDNLKSLT 113
Query: 98 QMTL 101
+ L
Sbjct: 114 HIWL 117
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 310 HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV 369
H + LK R + L I ++ +++ L+ + L N+ + + + F +L N+ +I
Sbjct: 118 HLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANI-EEMPSHLFDDLENLESIE 176
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414
N+++ + F +P L +L+L N+LK +F +TS Q
Sbjct: 177 FGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQ 221
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 82 IEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHL 126
IEE+PS LFD +EN+E +++ NKL + ++ + KL+ L
Sbjct: 158 IEEMPSHLFDDLENLE--SIEFGSNKLRQMPRG-IFGKMPKLKQL 199
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 465 SLRKLYLDFNEIKHLDA---TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
L++ + H+ A T NL LEL + NI + F + NL+ I+
Sbjct: 124 GLKRFRFTTRRLTHIPANLLTDMRNLSHLELRA----NIEEMPSHLFDDLENLESIEFGS 179
Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRPGRESN 580
N++ + F KL+ LN++ N+L+S+P +F T ++K+ + N P S
Sbjct: 180 NKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN-----PWDCSC 234
Query: 581 PR 582
PR
Sbjct: 235 PR 236
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T+ + L N+I+K+ +F + +L + L NN L ++ + F L +L ++L+
Sbjct: 30 TTTQVLYLYDNRITKLEPGVF--DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFN 373
N LKSI +F NL ++ +I L N
Sbjct: 88 NQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
++P FD + L L N Q+ LP+G+FDK+ + Q++L+ N+L + +
Sbjct: 45 LEPGVFDRLTQLTRLDLD--NNQLTVLPAGVFDKLTQLTQLSLN--DNQLKSIPRGA-FD 99
Query: 119 NVTKLQHL 126
N+ L H+
Sbjct: 100 NLRSLTHI 107
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
K L + G ++L L N I + F + L +DL N++++L F
Sbjct: 19 KSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 537 KLRILNISHNRLRSLPRDVFSN 558
+L L+++ N+L+S+PR F N
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDN 100
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N + ++ F L + + L NQ+ + F L L +L L DN+LK F
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 409 NITS 412
N+ S
Sbjct: 100 NLRS 103
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTS-----LNYINLEYNKISKI-HNNLFHFN 312
+ +K + E L+ D + + + R+ S ++ S + ++L +NKI+ I H +L
Sbjct: 17 LFSKRCSAQESLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL---R 73
Query: 313 IHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372
L+ + L ++ + IE D FY+L L + LS N L S+ ++ F L+++ + L
Sbjct: 74 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 133
Query: 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNI 410
N + + + PNL L L+ N+ FS I
Sbjct: 134 NPYQTLGVTSL--FPNLTNL----QTLRIGNVETFSEI 165
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 32/163 (19%)
Query: 341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK 400
+ ++ LS+N + I + N+ ++L ++I I +AF +L +L LDL DN L
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 401 DFNLNVFSNITSKQTPMNLNLSNNY----ITNLYENDKKQAPIYIKSLDLSNNRIQEVPV 456
+ + F ++S + +NL + N Y +T+L+ N L+N +Q + +
Sbjct: 114 SLSSSWFGPLSSLKY-LNL-MGNPYQTLGVTSLFPN-------------LTN--LQTLRI 156
Query: 457 NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499
++TF+ EI+ +D +L+ LE+ +L N
Sbjct: 157 GNVETFS-----------EIRRIDFAGLTSLNELEIKALSLRN 188
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 117/250 (46%), Gaps = 32/250 (12%)
Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
FY +L+T+ Y+LL+ +K + +N + + + SF+Q +L +L LDL
Sbjct: 322 FYLFYDLSTV---YSLLEKVKRITVEN-SKVFLVPCSFSQ----------HLKSLEFLDL 367
Query: 395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY-IKSLDLSNNRIQE 453
+N + + L + + + L LS N++ ++ + + + + SLD+S N
Sbjct: 368 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 427
Query: 454 VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPN 513
+P + + + +R L L I+ + L+VL++ +NN+ + +P
Sbjct: 428 MPDSC--QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDV---SNNNLDSFS----LFLPR 478
Query: 514 LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDK 572
LQ + +S N++ L + L ++ I+ N+L+S+P +F T ++K+ + N
Sbjct: 479 LQELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN--- 533
Query: 573 IRPGRESNPR 582
P S PR
Sbjct: 534 --PWDCSCPR 541
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 41 IFNSKLRELEITGKDLKFI-DPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQM 99
+F +L+EL I+ LK + D S F + L +KI + Q++ +P G+FD++ +++++
Sbjct: 474 LFLPRLQELYISRNKLKTLPDASLFPVL-----LVMKIASNQLKSVPDGIFDRLTSLQKI 528
Query: 100 TL 101
L
Sbjct: 529 WL 530
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 465 SLRKLYLDFNEI---KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
+++ L L FN+I H D A NL VL L S N I F + +L+ +DLS
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE---GDAFYSLGSLEHLDLSD 109
Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSL 551
N +S L+ F L+ LN+ N ++L
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 139
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 177/430 (41%), Gaps = 82/430 (19%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS---FSLFNSNE 254
NKIT + R NLQ L L +++ IE + F L+ L++S S +S+
Sbjct: 62 NKITYIGHGDLRACANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSSLSSSW 119
Query: 255 F--------------PYYILN-----KNLNTLEWLAMDN-NNIKNIRNYSLYNLTSL--- 291
F PY L NL L+ L + N IR LTSL
Sbjct: 120 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 179
Query: 292 --------NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
NY + I IH+ H + L EI + +++ S + L++ N
Sbjct: 180 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI-----FADILSSVRYLELRDTNL 234
Query: 344 ITLSYNLLKSIKTTS-FKNLNNMLNIVL--SFNQ----IKYIYPNAFVNLPNLVKLDLQD 396
++ L + +S K L +++ SFN+ ++YI + V D
Sbjct: 235 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD-----DCTL 289
Query: 397 NKLKDFNL---NVFSNITSKQTPM--NLNLSNNY----ITNLYENDKKQAPIYIKSLDLS 447
N L DFN +V S + +T L++ Y ++ +Y +K +K + +
Sbjct: 290 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK-----VKRITVE 344
Query: 448 NNRIQEVPVNFLQTFADSLRKL-YLDFNE----IKHLDATAF-GNLDVLELLSLEHNNIA 501
N+++ VP +F Q L+ L +LD +E ++L +A G L+ L L N++
Sbjct: 345 NSKVFLVPCSFSQ----HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 400
Query: 502 VVVK--RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNT 559
+ K + + NL +D+S N + + + K+R LN+S +R + + T
Sbjct: 401 SMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVV-KTCIPQT 458
Query: 560 IIEKLDISYN 569
+E LD+S N
Sbjct: 459 -LEVLDVSNN 467
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 485 GNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544
G ++ L L N I + NLQ++ L + I+ + G+ FY L L++S
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 545 HNRLRSLPRDVFS 557
N L SL F
Sbjct: 109 DNHLSSLSSSWFG 121
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T+ + L N+I+K+ +F + +L + L NN L ++ + F L +L ++L+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVF--DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFN 373
N LKSI +F NL ++ +I L N
Sbjct: 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
++P FD + L L N Q+ LP+G+FDK+ + Q++L+ N+L + +
Sbjct: 45 LEPGVFDRLTQLTRLDLD--NNQLTVLPAGVFDKLTQLTQLSLN--DNQLKSIPRGA-FD 99
Query: 119 NVTKLQHL 126
N+ L H+
Sbjct: 100 NLKSLTHI 107
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
K L + G ++L L N I + F + L +DL N++++L F
Sbjct: 19 KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 537 KLRILNISHNRLRSLPRDVFSN 558
+L L+++ N+L+S+PR F N
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDN 100
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N + ++ F L + + L NQ+ + F L L +L L DN+LK F
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 409 NITS 412
N+ S
Sbjct: 100 NLKS 103
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 40 GIFN--SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIE 97
G+F+ ++L L++ L + FD + L+L + Q++ +P G FD ++++
Sbjct: 48 GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL--NDNQLKSIPRGAFDNLKSLT 105
Query: 98 QMTL 101
+ L
Sbjct: 106 HIWL 109
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 132/313 (42%), Gaps = 42/313 (13%)
Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
NT E L N + I+N + L +L +++L +I+ +H + F H +L I L+
Sbjct: 32 NTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQ--SHHQLNTIVLTG 89
Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFV 384
N L + + K L + L+ + +++ NL N+ ++ L N I I
Sbjct: 90 NPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSI------ 143
Query: 385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSL 444
NLP Q+ K+ DF N I+ K T S TNL SL
Sbjct: 144 NLPE--NFPTQNLKVLDFQNNAIHYISRKDTN-----SLEQATNL-------------SL 183
Query: 445 DLSNNRIQEV-PVNFLQTFADSLR-----KLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
+ + N I+ + P F+ SL+ L++ F +++ L L L + E
Sbjct: 184 NFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQN------STLQSLWLGTFEDT 237
Query: 499 NIAVVVKRTFIGMPNLQI--IDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
+ + TF G+ ++ + I+L + S L+ F +++ L+++ L LP +
Sbjct: 238 DDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIE 297
Query: 557 SNTIIEKLDISYN 569
++KL ++ N
Sbjct: 298 GMNSLKKLVLNAN 310
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 63/282 (22%)
Query: 198 NKITDLNGNLFRHLYNLQELSLS-------------FNKLQIIELNSNVFDVFEKLQLLE 244
++ +DL+ + FR +QEL L+ N L+ + LN+N FD QL +
Sbjct: 263 HRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFD-----QLCQ 317
Query: 245 ISFSLFNSNEFPYYILN-----------KNLNTLEWLAMDNNNIK--NIRNYSLYNLTSL 291
I+ + F S Y N + L L+ L + +++I+ + N L NL L
Sbjct: 318 INAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHL 377
Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351
Y+NL YN+ + + F L ++ ++ +++ S F NL L + LS+ LL
Sbjct: 378 QYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS-PFQNLHLLRVLNLSHCLL 436
Query: 352 KS----------------IKTTSFK-------NLNNMLN----IVLSFNQIKYIYPNAFV 384
+ ++ SF+ NL M+ ++LS + I AF
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
L N+ LDL N L +++ S++ + LN+++N I
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKG----LYLNMASNNI 534
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 152/353 (43%), Gaps = 69/353 (19%)
Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267
F L ++ S++ K + +L+S+ F F ++Q L+++ + N P I + +N+L
Sbjct: 247 FEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG--LPSGI--EGMNSL 302
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
+ L ++ N+ + + + SL + ++ N ++++ L L
Sbjct: 303 KKLVLNANSFDQLCQINAASFPSLRDLYIKGN-----------------MRKLDLGTRCL 345
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTT--SFKNLNNMLNIVLSFNQIKYIYPNAFVN 385
E +E NL++L+ LS++ +++ KNL ++ + LS+N+ + AF
Sbjct: 346 EKLE-----NLQKLD---LSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKE 397
Query: 386 LPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM-NLNLSNNYITNLYENDKKQAPIYIKSL 444
P L LD+ L ++ + +P NL+L ++ L
Sbjct: 398 CPQLELLDVAFTHL---------HVKAPHSPFQNLHL-------------------LRVL 429
Query: 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV---LELLSLEHNNIA 501
+LS+ + + L D LR L L N + + L + LE+L L N+
Sbjct: 430 NLSHCLLDTSNQHLLAGLQD-LRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLL 488
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQF--YFSFKLRILNISHNRLRSLP 552
+ ++ F G+ N+ +DLS N LTG+ K LN++ N +R +P
Sbjct: 489 SIDQQAFHGLRNVNHLDLSHNS---LTGDSMDALSHLKGLYLNMASNNIRIIP 538
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N+++ L L L + N L ++P+ F + +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 561 I 561
+
Sbjct: 197 L 197
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N + ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNDLTELPAGLLNGLENLDTLLL 179
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Query: 270 LAMDNNNIKNIRNYSLYNLTS-----LNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
L+ D N I + SL ++ S + ++L N+I+ I N+ ++ L+ + L++
Sbjct: 28 LSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVN--LQALVLTS 85
Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFV 384
N + IE D+F +L L + LSYN L ++ ++ FK L+++ + L N K + +
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Query: 385 NLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
+ +L KL + L+ N++ F+ I K
Sbjct: 146 S--HLTKLQI----LRVGNMDTFTKIQRK 168
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 123/282 (43%), Gaps = 37/282 (13%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N+IT ++ + + NLQ L L+ N + IE E SFS
Sbjct: 62 NRITYISNSDLQRCVNLQALVLTSNGINTIE---------------EDSFS--------- 97
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
+L +LE L + N + N+ + L+SL ++NL N + F+ +L
Sbjct: 98 -----SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKL 151
Query: 318 KEIRLSN-NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
+ +R+ N + I+ F L L + + + L+S + S K++ N+ +++L Q
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-H 210
Query: 377 YIYPNAFVNLPNLVK-LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN--LYEND 433
+ FV++ + V+ L+L+D L F+ + S + N IT+ L++
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270
Query: 434 KKQAPIY-IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN 474
K I + L+ S N+++ VP SL+K++L N
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLT-SLQKIWLHTN 311
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
LD+S NR+ +P+ L+ + L++LYL NE+K L LE LSL +NN+ +
Sbjct: 106 LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
G+ NL + L N S+ T + +F L H
Sbjct: 165 PAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHG 205
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 82 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 137
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N + ELP+GL + +EN++ + L
Sbjct: 138 KTLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLL 180
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 80 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N ++ L L L + N L ++P+ F + +
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 197
Query: 561 IE 562
+
Sbjct: 198 LP 199
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
LD+S NR+ +P+ L+ + L++LYL NE+K L LE LSL +NN+ +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
G+ NL + L N S+ T + +F L H
Sbjct: 164 PAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHG 204
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N + ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLL 179
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N ++ L L L + N L ++P+ F + +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 561 I 561
+
Sbjct: 197 L 197
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
LD+S NR+ +P+ L+ + L++LYL NE+K L LE LSL +NN+ +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
G+ NL + L N S+ T + +F L H
Sbjct: 164 PAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHG 204
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N + ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLL 179
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N ++ L L L + N L ++P+ F + +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 561 I 561
+
Sbjct: 197 L 197
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
LD+S NR+ +P+ L+ + L++LYL NE+K L LE LSL +NN+ +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
G+ NL + L N S+ T + +F L H
Sbjct: 164 PAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHG 204
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N + ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLL 179
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N ++ L L L + N L ++P+ F + +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 561 IE 562
+
Sbjct: 197 LP 198
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
LD+S NR+ +P+ L+ + L++LYL NE+K L LE LSL +NN+ +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
G+ NL + L N S+ T + +F L H
Sbjct: 164 PAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHG 204
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGT-----TILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN+L L + L + L L T L L+G+ +L+EL + G +L
Sbjct: 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNEL 136
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
K + P L+L N + ELP+GL + +EN++ + L
Sbjct: 137 KTLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLL 179
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ +LDLS+N++Q +P+ QT +L L + FN + L A L L+ L L+ N +
Sbjct: 79 LGTLDLSHNQLQSLPL-LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
+ P L+ + L+ N ++ L L L + N L ++P+ F + +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 561 I 561
+
Sbjct: 197 L 197
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 317 LKEIRLS-NNYLELIESDTFYNLKELNTITLS-YNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
L++I +S N+ LE+IE+D F NL +L+ I + N L I +F+NL N+ +++S
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 375 IKYIYPNAFVNLPNLVKLDLQDN 397
IK++ ++ V LD+QDN
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDN 138
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNI-VLSFNQIK 376
E+R L +I+ F +L I +S N +L+ I+ F NL + I + N +
Sbjct: 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLK 400
YI P AF NLPNL L + + +K
Sbjct: 94 YINPEAFQNLPNLQYLLISNTGIK 117
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNI-VLSFNQIK 376
E+R L +I+ F +L I +S N +L+ I+ F NL + I + N +
Sbjct: 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLK 400
YI P AF NLPNL L + + +K
Sbjct: 94 YINPEAFQNLPNLQYLLISNTGIK 117
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447
NL+ L+L+DN++ D L N+T L LS N + N+ Q+ IK+LDL+
Sbjct: 70 NLIGLELKDNQITD--LTPLKNLTKI---TELELSGNPLKNVSAIAGLQS---IKTLDLT 121
Query: 448 NNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHL--------------------DATAFGN 486
+ +I +V P+ L +L+ LYLD N+I ++ D T N
Sbjct: 122 STQITDVTPLAGLS----NLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLAN 177
Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
L L L + N I+ + +PNL + L N+IS
Sbjct: 178 LSKLTTLRADDNKISDI--SPLASLPNLIEVHLKDNQIS 214
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447
NL+ L+L+DN++ D L N+T L LS N + N+ Q+ IK+LDL+
Sbjct: 64 NLIGLELKDNQITD--LAPLKNLTKI---TELELSGNPLKNVSAIAGLQS---IKTLDLT 115
Query: 448 NNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHL--------------------DATAFGN 486
+ +I +V P+ L +L+ LYLD N+I ++ D T N
Sbjct: 116 STQITDVTPLAGLS----NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN 171
Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
L L L + N I+ + +PNL + L N+IS
Sbjct: 172 LSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS 208
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 122/292 (41%), Gaps = 58/292 (19%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
+LE++A NN ++ + L NL L I + N + K+ + + L+ I NN
Sbjct: 174 SLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD------LPLSLESIVAGNN 225
Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIK--TTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
LE E NL L TI NLLK++ S + LN + N
Sbjct: 226 ILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALN--------------VRDNYL 269
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL---NLSNNYITNLYENDKKQAPIY 440
+LP L Q D + N+FS ++ + P NL N S+N I +L + P
Sbjct: 270 TDLPELP----QSLTFLDVSENIFSGLS--ELPPNLYYLNASSNEIRSLCD-----LPPS 318
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
++ L++SNN++ E+P L +L FN + + L+ L +E+N +
Sbjct: 319 LEELNVSNNKLIELPA-----LPPRLERLIASFNHLAEVPELPQN----LKQLHVEYNPL 369
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
R F +P + DL N S L E L+ L++ N LR P
Sbjct: 370 -----REFPDIPE-SVEDLRMN--SHL-AEVPELPQNLKQLHVETNPLREFP 412
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 146/352 (41%), Gaps = 76/352 (21%)
Query: 230 NSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLT 289
NS++ D+ +L ++ + SN L++N N L +LA D+N + N+ + LT
Sbjct: 51 NSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTN-LTYLACDSNKLTNL---DVTPLT 106
Query: 290 SLNYINLEYNKISKIHNN----LFHFNIHK-RLKEIRLSNNYLELIESDTFYNLKELNTI 344
L Y+N + NK++K+ + L + N + L EI +S+N +L E D N
Sbjct: 107 KLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNT-QLTELDCHLN------- 158
Query: 345 TLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNL 404
K I + + SFN+I +LD+ NKL L
Sbjct: 159 -------KKITKLDVTPQTQLTTLDCSFNKI--------------TELDVSQNKL----L 193
Query: 405 NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV---PVNFLQT 461
N LN N IT L N I + LD S+N++ E+ P+ L
Sbjct: 194 N------------RLNCDTNNITKLDLNQN----IQLTFLDCSSNKLTEIDVTPLTQLTY 237
Query: 462 FADSLRKLY-LDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520
F S+ L LD + + L D+LE + L HN + + G ++ +D++
Sbjct: 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLE-IDLTHNTQLIYFQAE--GCRKIKELDVT 294
Query: 521 FNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF---SNTIIEKLDISYN 569
N Q Y + I+ L P+ V+ +NT + +LD+S+N
Sbjct: 295 HN-------TQLYL-LDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHN 338
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 270 LAMDNNNIKNIRNYSLYNLTS-----LNYINLEYNKISKI-HNNLFHFNIHKRLKEIRLS 323
L+ D + + + R+ S ++ S + ++L +NKI+ I H +L L+ + L
Sbjct: 2 LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL---RACANLQVLILK 58
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
++ + IE D FY+L L + LS N L S+ ++ F L+++ + L N + + +
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNI 410
PNL L L+ N+ FS I
Sbjct: 119 --FPNLTNL----QTLRIGNVETFSEI 139
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 117/250 (46%), Gaps = 32/250 (12%)
Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
FY +L+T+ Y+LL+ +K + +N + + + SF+Q +L +L LDL
Sbjct: 296 FYLFYDLSTV---YSLLEKVKRITVEN-SKVFLVPCSFSQ----------HLKSLEFLDL 341
Query: 395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY-IKSLDLSNNRIQE 453
+N + + L + + + L LS N++ ++ + + + + SLD+S N
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401
Query: 454 VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPN 513
+P + + + +R L L I+ + L+VL++ +NN+ + +P
Sbjct: 402 MPDSC--QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDV---SNNNLDSFS----LFLPR 452
Query: 514 LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDK 572
LQ + +S N++ L + L ++ IS N+L+S+P +F T ++K+ + N
Sbjct: 453 LQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN--- 507
Query: 573 IRPGRESNPR 582
P S PR
Sbjct: 508 --PWDCSCPR 515
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 12/207 (5%)
Query: 214 LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMD 273
++ L LSFNK+ I LQ+L + S N+ E + +L +LE L +
Sbjct: 28 MKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRINTIEGDAFY---SLGSLEHLDLS 82
Query: 274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN--NYLELIE 331
+N++ ++ + L+SL Y+NL N + N+ L+ +R+ N + E+
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRR 141
Query: 332 SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
D F L LN + + L++ ++ S K++ ++ ++ L ++ ++ F ++ + V+
Sbjct: 142 ID-FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL-EIFADILSSVR 199
Query: 392 -LDLQDNKLKDFNLNVFSNITSKQTPM 417
L+L+D L F + + +PM
Sbjct: 200 YLELRDTNLARFQFSPLP-VDEVSSPM 225
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 32/163 (19%)
Query: 341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK 400
+ ++ LS+N + I + N+ ++L ++I I +AF +L +L LDL DN L
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 401 DFNLNVFSNITSKQTPMNLNLSNNY----ITNLYENDKKQAPIYIKSLDLSNNRIQEVPV 456
+ + F ++S + +NL + N Y +T+L+ N L+N +Q + +
Sbjct: 88 SLSSSWFGPLSSLKY-LNL-MGNPYQTLGVTSLFPN-------------LTN--LQTLRI 130
Query: 457 NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499
++TF+ EI+ +D +L+ LE+ +L N
Sbjct: 131 GNVETFS-----------EIRRIDFAGLTSLNELEIKALSLRN 162
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 41 IFNSKLRELEITGKDLKFI-DPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQM 99
+F +L+EL I+ LK + D S F + L +KI+ Q++ +P G+FD++ +++++
Sbjct: 448 LFLPRLQELYISRNKLKTLPDASLFPVL-----LVMKISRNQLKSVPDGIFDRLTSLQKI 502
Query: 100 TL 101
L
Sbjct: 503 WL 504
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 465 SLRKLYLDFNEI---KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
+++ L L FN+I H D A NL VL L S + I + F + +L+ +DLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKS---SRINTIEGDAFYSLGSLEHLDLSD 83
Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSL 551
N +S L+ F L+ LN+ N ++L
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 485 GNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544
G ++ L L N I + NLQ++ L + I+ + G+ FY L L++S
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 545 HNRLRSLPRDVFS 557
N L SL F
Sbjct: 83 DNHLSSLSSSWFG 95
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 296 LEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIK 355
L N+I+K+ +F ++ L+++ ++N L I + F L +L + L+ N LKSI
Sbjct: 40 LNNNQITKLEPGVFDHLVN--LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 356 TTSFKNLNNMLNIVLSFN 373
+F NL ++ +I L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N+IT L +F HL NLQ+L + NKL I + VFD
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIP--TGVFD---------------------- 78
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L L L +++N++K+I + NL SL +I L N
Sbjct: 79 -----KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
L+ N + ++ F +L N+ + + N++ I F L L +LDL DN LK
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 406 VFSNITS 412
F N+ S
Sbjct: 100 AFDNLKS 106
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 40 GIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQM 99
GI K R L + + ++P FD++ L + ++ +P+G+FDK+ + Q
Sbjct: 30 GIPTDKQR-LWLNNNQITKLEPGVFDHLVNLQQLYF--NSNKLTAIPTGVFDKLTQLTQ- 85
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHL 126
LDL+ N L + + N+ L H+
Sbjct: 86 -LDLNDNHLKSIPRGA-FDNLKSLTHI 110
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
L L +N I + F + NLQ + + N+++ + F +L L+++ N L+S+P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 553 RDVFSN 558
R F N
Sbjct: 98 RGAFDN 103
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
L++S N I E+ + + + + LR L + N I++LD + F LE L L HN +
Sbjct: 26 LNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL--- 81
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLR 549
VK + NL+ +DLSFN L ++F +L+ L +S L
Sbjct: 82 VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
+L++ N I+ + + + L+I+ +S N I L F F+ +L L++SHN+L +
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 552 PRDVFSNTIIEKLDISYNQDKIRP 575
N ++ LD+S+N P
Sbjct: 85 SCHPTVN--LKHLDLSFNAFDALP 106
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 412 SKQTP-MNLNLSNNYITN-LYENDKKQAPIYIKSLDLSNNRIQEVP-VNFLQTFADSLRK 468
SK +P ++L+ SNN +T+ ++EN + ++L L N+++E+ + + T SL++
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTEL--ETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 469 LYLDFNEIKHLDATAFGNLDVLELLSL--EHNNIAVVVKRTFIGMPNLQIIDLSFNEISM 526
L + N + + D LLSL N + + R P ++++DL N+I
Sbjct: 379 LDISQNSVSY-DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS 435
Query: 527 LTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRPGRESNPR 582
+ + L+ LN++ N+L+S+P +F T ++K+ + N P S PR
Sbjct: 436 IPKQVVKLE-ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN-----PWDCSCPR 486
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 56/208 (26%)
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
L+E R S+ I S TF +L + L+ LK + + K LN + +VLS N
Sbjct: 258 LQEHRFSD-----ISSTTFQCFTQLQELDLTATHLKGLPS-GMKGLNLLKKLVLSVNHFD 311
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
+ + N P+L L ++ N +K +L V K L N
Sbjct: 312 QLCQISAANFPSLTHLYIRGN-VKKLHLGV--GCLEK-------LGN------------- 348
Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
+++LDLS+N I+ LQ NL L+ L+L
Sbjct: 349 ----LQTLDLSHNDIEASDCCSLQ-----------------------LKNLSHLQTLNLS 381
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
HN + + F P L+++DL+F +
Sbjct: 382 HNEPLGLQSQAFKECPQLELLDLAFTRL 409
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T+ ++L N+I+K+ +F + +L + L+ N L + F L +L + L
Sbjct: 40 TTTQVLHLYINQITKLEPGVF--DSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHI 97
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFN 373
N LKSI F NL ++ +I L FN
Sbjct: 98 NQLKSIPMGVFDNLKSLTHIYL-FN 121
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
++P FD++ L L + Q+ LP G+FDK+ + + L + N+L + M ++
Sbjct: 55 LEPGVFDSLTQLTYLNLAVN--QLTALPVGVFDKLTKLTHLALHI--NQLKSIPMG-VFD 109
Query: 119 NVTKLQHL 126
N+ L H+
Sbjct: 110 NLKSLTHI 117
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
L N + ++ F +L + + L+ NQ+ + F L L L L N+LK +
Sbjct: 47 LYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMG 106
Query: 406 VFSNITS 412
VF N+ S
Sbjct: 107 VFDNLKS 113
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
T + L + N I + +LT L Y+NL N+++ + + F+ +L + L N
Sbjct: 41 TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGV--FDKLTKLTHLALHIN 98
Query: 326 YLELIESDTFYNLKELNTITLSYN 349
L+ I F NLK L I L N
Sbjct: 99 QLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
++L L N I + F + L ++L+ N+++ L F KL L + N+L+S
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 551 LPRDVFSN 558
+P VF N
Sbjct: 103 IPMGVFDN 110
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 220 SFNKLQIIEL---NSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDN-- 274
SF+K I+ + +DV L E + N+N+ YY+L +N + W +D
Sbjct: 269 SFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLDQGL 328
Query: 275 NNIKN 279
N IKN
Sbjct: 329 NGIKN 333
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 212 YNLQELSLSFNKLQIIEL---NSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLE 268
YN SF+K I+ + +DV L E + N+N+ YY+L +N +
Sbjct: 241 YNSDTSFGSFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQG 300
Query: 269 WLAMDN--NNIKN 279
W +D N IKN
Sbjct: 301 WYNLDQGLNGIKN 313
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 212 YNLQELSLSFNKLQIIEL---NSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLE 268
YN SF+K I+ + +DV L E + N+N+ YY+L +N +
Sbjct: 241 YNSDTSFGSFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQG 300
Query: 269 WLAMDN--NNIKN 279
W +D N IKN
Sbjct: 301 WYNLDQGLNGIKN 313
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL-------DATAFGNLDV-L 490
+ + L L N+I+E+P +F F D + L N++K++ G++D
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFC-AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSY 653
Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
+ E NI+ + G+ N + LS+NEI E F + + +S+N S
Sbjct: 654 NKIGSEGRNISCSXD-DYKGI-NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTS 711
Query: 551 LPR 553
+P
Sbjct: 712 IPE 714
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 469 LYLDFNEIKHLDATAFGNLDV-LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527
Y +N ++ A+A V L LL HN + + F L + L +N+I +
Sbjct: 553 FYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEI 610
Query: 528 TGEQFYFSFKLRILNISHNRLRSLPRDVF---SNTIIEKLDISYNQ 570
+ F+ ++ L SHN+L+ +P ++F S + +D SYN+
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVXGSVDFSYNK 655
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 51/117 (43%), Gaps = 34/117 (29%)
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
N V+LP L L L +NK+ D + V S +T T L+L +N I+++
Sbjct: 146 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDT---LSLEDNQISDI----------- 189
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA-FGNLDVLELLSLE 496
VP+ L L+ LYL N I L A A NLDVLEL S E
Sbjct: 190 -------------VPLAGLT----KLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLF-NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
QII NS++ V + +Q L LF N N+ NL L WL +D N IK++ +
Sbjct: 68 QIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSL 126
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
L ++LE+N IS I N L H +L+ + L NN ++ + L +L+T
Sbjct: 127 KDL--KKLKSLSLEHNGISDI-NGLVHL---PQLESLYLGNN--KITDITVLSRLTKLDT 178
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
++L N + I L + N+ LS N I + A L NL L+L
Sbjct: 179 LSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 50/117 (42%), Gaps = 34/117 (29%)
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
N V+LP L L L +NK+ D + V S +T T L+L +N I+++
Sbjct: 123 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDT---LSLEDNQISDI----------- 166
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA-TAFGNLDVLELLSLE 496
VP+ L L+ LYL N I L A NLDVLEL S E
Sbjct: 167 -------------VPLACLT----KLQNLYLSKNHISDLRALCGLKNLDVLELFSQE 206
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL-VK 391
D +K L T+ SYN L S +L N++ I N+I P+++ + L
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK--------- 442
+ + N+L F+N+ ++ N+ + L+ +DK I++
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 443 ---------SLDLSNNRI 451
LDL NNRI
Sbjct: 239 KVGLSKNLNGLDLRNNRI 256
>pdb|1W9H|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus.
pdb|2BGG|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Sirna Duplex.
pdb|2BGG|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Sirna Duplex.
pdb|2W42|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Dna Duplex.
pdb|2W42|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Dna Duplex
Length = 427
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 277 IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF 309
IK +RNY Y + SL +YN+I+ IHNN F
Sbjct: 30 IKGLRNYGPYEVPSL-----KYNQIALIHNNQF 57
>pdb|1YTU|A Chain A, Structural Basis For 5'-end-specific Recognition Of The
Guide Rna Strand By The A. Fulgidus Piwi Protein
pdb|1YTU|B Chain B, Structural Basis For 5'-end-specific Recognition Of The
Guide Rna Strand By The A. Fulgidus Piwi Protein
Length = 427
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 277 IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF 309
IK +RNY Y + SL +YN+I+ IHNN F
Sbjct: 30 IKGLRNYGPYEVPSL-----KYNQIALIHNNQF 57
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 41/232 (17%)
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
+KE+ LS N L I + +L + LS N+L +T ++L+ + + L+ N
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNN--- 90
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
Y + P++ L +N N++ S + Q N+ L+NN IT L + D+
Sbjct: 91 --YVQELLVGPSIETLHAANN-----NISRVS-CSRGQGKKNIYLANNKITMLRDLDEG- 141
Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
++ LDL N I VNF + A S D LE L+L+
Sbjct: 142 CRSRVQYLDLKLNEID--TVNFAELAASS----------------------DTLEHLNLQ 177
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
+N I V + + L+ +DLS N+++ + G +F + + +++ +N+L
Sbjct: 178 YNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKL 226
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
+KE+ LS N L I + +L + LS N+L +T ++L+ + + L+ N ++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ 93
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
+ P++ L +N + + + Q N+ L+NN IT L + D+
Sbjct: 94 ELLVG-----PSIETLHAANNNISRV------SCSRGQGKKNIYLANNKITMLRDLDEG- 141
Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA-TAFGNLDVLELLS 494
++ LDL N I V L +D+L L L +N I + F L L+L S
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 538 LRILNISHNRLRSLPRDVFS 557
LR+L++SHNRL SLP ++ S
Sbjct: 272 LRVLDLSHNRLTSLPAELGS 291
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 424 NYITNLY--ENDKKQAPIYIKSL------DLSNNRIQEVPVNFLQTFADSLRKLYLDFNE 475
+++T LY N + P IK+L DLS+NR+ +P F L+ Y N
Sbjct: 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF--QLKYFYFFDNM 304
Query: 476 IKHLDATAFGNLDVLELLSLEHNNI 500
+ L FGNL L+ L +E N +
Sbjct: 305 VTTL-PWEFGNLCNLQFLGVEGNPL 328
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/115 (16%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 333 DTFYNLKELNTITLSY----NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388
D+ ++L +T Y L+ ++ + L + N+ + + ++++ P+AF P
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQ-----TPMNLNLSNNYITNLYENDKKQAP 438
L +L+L N L+ + ++ ++ P++ + + ++ E P
Sbjct: 82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVP 136
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLF-NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
QII NS++ V + +Q L LF N N+ NL L WL +D N IK++ +
Sbjct: 68 QIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSL 126
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
L ++LE+N IS I N L H +L+ + L NN ++ + L +L+T
Sbjct: 127 KDL--KKLKSLSLEHNGISDI-NGLVHL---PQLESLYLGNN--KITDITVLSRLTKLDT 178
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
++L N + I L + N+ LS N I + A L NL L+L
Sbjct: 179 LSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 36 DQLQGIFNSKLRELEITGKDLKFIDP---SAFDNIDACYDLTLKITNTQIEELPSG 88
D ++GI +S+ + + ++L F+ P A D I Y+L LKI TQ+E P G
Sbjct: 158 DIIEGIKDSQAQRM---AENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFG 210
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 36 DQLQGIFNSKLRELEITGKDLKFIDP---SAFDNIDACYDLTLKITNTQIEELPSG 88
D ++GI +S+ + + ++L F+ P A D I Y+L LKI TQ+E P G
Sbjct: 158 DIIEGIKDSQAQRM---AENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFG 210
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLF-NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
QII NS++ V + +Q L LF N N+ NL L WL +D N IK
Sbjct: 68 QIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK--DLS 124
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
SL +L L ++LE+N IS I N L H +L+ + L NN ++ + L +L+T
Sbjct: 125 SLKDLKKLKSLSLEHNGISDI-NGLVHL---PQLESLYLGNN--KITDITVLSRLTKLDT 178
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
++L N + I L + N+ LS N I + A L NL L+L
Sbjct: 179 LSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 36/118 (30%)
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
N V+LP L L L +NK+ D + V S +T
Sbjct: 126 NGLVHLPQLESLYLGNNKITD--ITVLSRLTK---------------------------- 155
Query: 441 IKSLDLSNNRIQE-VPVNFLQTFADSLRKLYLDFNEIKHLDA-TAFGNLDVLELLSLE 496
+ +L L +N+I+ VP+ L L+ LYL N I L A NLDVLEL S E
Sbjct: 156 LDTLSLEDNQIRRIVPLARLT----KLQNLYLSKNHISDLRALRGLKNLDVLELFSQE 209
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 36 DQLQGIFNSKLRELEITGKDLKFIDP---SAFDNIDACYDLTLKITNTQIEELPSG 88
D ++GI +S+ + + ++L F+ P A D I Y+L LKI TQ+E P G
Sbjct: 157 DIIEGIKDSQAQRM---AENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFG 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLF-NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
QII NS++ V + +Q L LF N N+ NL L WL +D N +K
Sbjct: 50 QIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK--DLS 106
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
SL +L L ++LE+N IS I N L H +L+ + L NN ++ + L +L+T
Sbjct: 107 SLKDLKKLKSLSLEHNGISDI-NGLVHL---PQLESLYLGNN--KITDITVLSRLTKLDT 160
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
++L N + I L + N+ LS N I + A L NL L+L
Sbjct: 161 LSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLF-NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
QII NS++ V + +Q L LF N N+ NL L WL +D N +K
Sbjct: 48 QIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK--DLS 104
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
SL +L L ++LE+N IS I N L H +L+ + L NN ++ + L +L+T
Sbjct: 105 SLKDLKKLKSLSLEHNGISDI-NGLVHL---PQLESLYLGNN--KITDITVLSRLTKLDT 158
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
++L N + I L + N+ LS N I + A L NL L+L
Sbjct: 159 LSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,470,722
Number of Sequences: 62578
Number of extensions: 625170
Number of successful extensions: 3223
Number of sequences better than 100.0: 152
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 682
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)