Query psy11648
Match_columns 584
No_of_seqs 267 out of 3793
Neff 10.7
Searched_HMMs 29240
Date Fri Aug 16 15:23:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.9E-56 1.3E-60 485.0 37.8 555 2-577 54-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-55 7.2E-60 479.2 32.8 547 1-572 103-740 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-53 9.9E-58 458.8 41.2 552 1-572 28-622 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-52 6.6E-57 452.3 39.9 554 2-579 8-604 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.2E-50 4.2E-55 432.5 40.2 507 29-572 15-560 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-49 4.1E-54 424.8 33.4 498 30-572 15-558 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.5E-48 5E-53 416.4 35.0 504 2-549 37-560 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-48 2.5E-52 424.2 31.7 515 31-572 9-560 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6E-46 2.1E-50 396.2 34.5 486 46-582 13-543 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-45 6.6E-50 404.9 32.8 507 47-582 7-549 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 2.5E-45 8.5E-50 388.9 32.3 504 29-577 10-537 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-44 1.4E-48 377.5 31.8 481 30-575 9-514 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1E-43 3.5E-48 376.5 31.7 478 27-550 29-532 (570)
14 2z7x_B TOLL-like receptor 1, v 100.0 3.3E-43 1.1E-47 367.9 25.5 449 1-572 3-481 (520)
15 4eco_A Uncharacterized protein 100.0 1.3E-42 4.4E-47 369.9 25.7 351 186-578 204-606 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-41 2E-45 353.4 30.7 465 48-583 9-497 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-40 8.2E-45 355.7 35.0 500 29-572 34-580 (635)
18 4eco_A Uncharacterized protein 100.0 2.9E-42 9.9E-47 367.1 19.0 383 125-552 192-603 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 9.8E-41 3.3E-45 349.1 26.6 441 74-583 4-468 (520)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-40 4.9E-45 350.6 26.6 451 25-572 30-510 (562)
21 4ecn_A Leucine-rich repeat pro 100.0 2E-40 6.9E-45 358.2 26.8 367 198-580 435-848 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.6E-39 1.2E-43 346.5 31.7 499 27-549 53-580 (635)
23 4ecn_A Leucine-rich repeat pro 100.0 5.5E-39 1.9E-43 347.0 27.3 403 125-574 434-866 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-37 3.5E-42 328.8 28.0 378 186-583 98-497 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.7E-37 1.6E-41 315.8 31.6 374 191-575 13-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.6E-35 5.5E-40 304.4 30.2 374 128-550 22-409 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.2E-35 7.7E-40 300.3 26.0 404 69-572 11-429 (454)
28 1o6v_A Internalin A; bacterial 100.0 1.1E-34 3.8E-39 298.1 31.1 351 186-578 44-394 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 1.4E-35 4.8E-40 301.8 22.6 401 24-549 9-429 (454)
30 1o6v_A Internalin A; bacterial 100.0 3.1E-33 1.1E-37 287.4 32.8 352 137-556 44-395 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 1.4E-33 4.7E-38 291.5 27.3 322 190-550 13-334 (477)
32 2id5_A Lingo-1, leucine rich r 100.0 8E-33 2.7E-37 285.8 25.0 299 239-572 33-333 (477)
33 3o6n_A APL1; leucine-rich repe 100.0 3.4E-32 1.2E-36 273.3 28.1 308 238-572 45-352 (390)
34 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.7E-36 264.7 28.8 307 208-572 40-346 (347)
35 3bz5_A Internalin-J, INLJ; leu 100.0 5.1E-31 1.8E-35 268.4 33.1 342 179-581 34-397 (457)
36 4fmz_A Internalin; leucine ric 100.0 4.3E-31 1.5E-35 261.1 28.9 305 186-549 42-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 2.2E-31 7.6E-36 267.3 25.8 298 263-581 43-340 (390)
38 3oja_B Anopheles plasmodium-re 100.0 4.8E-31 1.6E-35 279.3 28.1 308 238-572 51-358 (597)
39 3oja_B Anopheles plasmodium-re 100.0 1.5E-30 5.3E-35 275.4 26.0 298 263-581 49-346 (597)
40 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-29 7.7E-34 256.3 29.6 313 205-575 35-355 (457)
41 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-29 2.5E-33 243.1 24.9 287 266-570 34-331 (332)
42 1xku_A Decorin; proteoglycan, 100.0 1.8E-28 6.3E-33 240.2 27.5 267 266-570 53-330 (330)
43 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-31 8.7E-36 273.6 4.4 390 69-549 3-440 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-31 3.9E-36 276.2 1.2 383 188-572 3-440 (461)
45 1xku_A Decorin; proteoglycan, 100.0 7.4E-28 2.5E-32 235.9 27.2 268 239-547 53-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-28 1.1E-32 238.7 23.9 247 262-547 75-331 (332)
47 3ogk_B Coronatine-insensitive 99.9 6.3E-29 2.2E-33 264.2 4.8 329 186-549 162-526 (592)
48 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-27 7.8E-32 229.9 14.6 231 314-575 75-308 (313)
49 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-27 1.1E-31 228.8 12.8 253 238-551 50-307 (313)
50 3zyj_A Leucine-rich repeat-con 99.9 1.4E-25 4.9E-30 228.5 24.5 245 293-549 47-292 (440)
51 3ogk_B Coronatine-insensitive 99.9 1.4E-28 4.8E-33 261.5 2.3 418 134-574 68-528 (592)
52 3zyi_A Leucine-rich repeat-con 99.9 1.3E-25 4.3E-30 229.8 23.8 245 293-549 58-303 (452)
53 2z80_A TOLL-like receptor 2, v 99.9 3.3E-26 1.1E-30 226.3 18.4 254 266-550 53-315 (353)
54 2z80_A TOLL-like receptor 2, v 99.9 2.3E-26 8E-31 227.3 16.6 277 263-573 29-315 (353)
55 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-26 1.7E-30 217.8 17.8 223 293-549 15-238 (285)
56 2z66_A Variable lymphocyte rec 99.9 1.4E-25 4.7E-30 217.3 19.8 246 269-549 11-261 (306)
57 3zyj_A Leucine-rich repeat-con 99.9 1.1E-24 3.7E-29 222.0 24.6 247 240-525 45-292 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 1.5E-24 5.1E-29 221.8 24.4 247 240-525 56-303 (452)
59 3g06_A SSPH2 (leucine-rich rep 99.9 9.1E-24 3.1E-28 221.2 29.3 257 266-572 41-297 (622)
60 2z66_A Variable lymphocyte rec 99.9 1E-24 3.6E-29 211.1 20.6 209 188-402 28-238 (306)
61 1ozn_A Reticulon 4 receptor; N 99.9 6.3E-25 2.1E-29 210.2 17.9 267 268-569 14-284 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.9 3.9E-25 1.3E-29 214.8 14.7 220 335-572 30-250 (317)
63 2p1m_B Transport inhibitor res 99.9 1.5E-26 5.2E-31 246.0 3.1 433 22-522 62-541 (594)
64 2p1m_B Transport inhibitor res 99.9 1.7E-26 5.7E-31 245.6 2.9 328 186-525 154-519 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-25 6.6E-30 217.0 9.2 239 262-520 31-270 (317)
66 4fcg_A Uncharacterized protein 99.9 3.7E-24 1.3E-28 208.5 18.1 245 288-583 80-325 (328)
67 4fcg_A Uncharacterized protein 99.9 2E-23 6.9E-28 203.3 19.6 240 262-552 78-317 (328)
68 3g06_A SSPH2 (leucine-rich rep 99.9 1E-22 3.5E-27 213.3 26.0 176 188-401 40-215 (622)
69 3oja_A Leucine-rich immune mol 99.9 9E-24 3.1E-28 217.0 16.0 215 340-572 35-250 (487)
70 1wwl_A Monocyte differentiatio 99.9 4.7E-25 1.6E-29 213.7 5.5 106 464-573 201-310 (312)
71 2z62_A TOLL-like receptor 4, v 99.9 3.5E-22 1.2E-26 190.1 20.6 204 316-524 29-236 (276)
72 1p9a_G Platelet glycoprotein I 99.9 3E-22 1E-26 191.2 20.1 203 335-572 6-208 (290)
73 2o6q_A Variable lymphocyte rec 99.9 5.7E-22 2E-26 187.8 21.7 111 438-549 108-218 (270)
74 1wwl_A Monocyte differentiatio 99.9 5E-24 1.7E-28 206.5 6.7 185 336-551 118-311 (312)
75 3oja_A Leucine-rich immune mol 99.9 6.2E-23 2.1E-27 210.8 12.0 235 265-543 34-269 (487)
76 2o6q_A Variable lymphocyte rec 99.9 2.2E-21 7.6E-26 183.7 21.6 202 290-525 17-218 (270)
77 2z62_A TOLL-like receptor 4, v 99.9 5.5E-21 1.9E-25 181.8 22.7 210 265-503 28-239 (276)
78 3rfs_A Internalin B, repeat mo 99.9 2.1E-21 7.3E-26 184.0 15.6 206 314-559 40-246 (272)
79 2xwt_C Thyrotropin receptor; s 99.9 2.1E-21 7.1E-26 180.5 14.0 125 439-569 105-236 (239)
80 3rfs_A Internalin B, repeat mo 99.9 1.2E-21 4.1E-26 185.7 12.4 214 25-302 18-235 (272)
81 3goz_A Leucine-rich repeat-con 99.9 3.7E-22 1.3E-26 197.6 7.8 254 294-549 3-297 (362)
82 1p9a_G Platelet glycoprotein I 99.9 2.9E-20 1E-24 177.4 20.0 110 286-403 7-116 (290)
83 2xwt_C Thyrotropin receptor; s 99.9 5.1E-21 1.7E-25 177.8 14.1 198 314-546 30-236 (239)
84 1h6u_A Internalin H; cell adhe 99.9 8.1E-21 2.8E-25 183.2 15.9 199 336-555 38-236 (308)
85 3goz_A Leucine-rich repeat-con 99.8 1.1E-21 3.8E-26 194.2 8.9 260 243-529 3-301 (362)
86 4glp_A Monocyte differentiatio 99.8 2.4E-21 8.2E-26 187.5 9.4 210 314-573 90-308 (310)
87 3m19_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 170.2 18.6 178 341-550 16-193 (251)
88 4glp_A Monocyte differentiatio 99.8 2.1E-20 7.3E-25 180.8 14.1 230 263-549 62-307 (310)
89 2ca6_A RAN GTPase-activating p 99.8 1.4E-21 4.7E-26 195.6 5.2 135 439-574 159-318 (386)
90 2ca6_A RAN GTPase-activating p 99.8 1.7E-21 5.7E-26 195.0 5.6 252 44-330 32-318 (386)
91 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.8E-24 175.2 17.9 210 272-530 26-235 (308)
92 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.9E-24 177.5 17.7 238 293-545 13-255 (350)
93 3m19_A Variable lymphocyte rec 99.8 4E-19 1.4E-23 166.2 18.2 181 315-527 14-194 (251)
94 2ast_B S-phase kinase-associat 99.8 1.3E-20 4.5E-25 185.0 7.4 105 440-550 196-307 (336)
95 2ast_B S-phase kinase-associat 99.8 1E-19 3.5E-24 178.6 10.9 255 188-485 47-314 (336)
96 4ay9_X Follicle-stimulating ho 99.8 5.8E-19 2E-23 173.7 14.3 240 242-522 13-256 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-18 1.5E-22 155.2 14.6 132 440-572 33-166 (220)
98 1h6t_A Internalin B; cell adhe 99.8 2.7E-18 9.3E-23 164.0 12.8 188 344-552 29-216 (291)
99 2v9t_B SLIT homolog 2 protein 99.8 5.4E-18 1.9E-22 154.7 14.2 150 418-572 15-165 (220)
100 3cvr_A Invasion plasmid antige 99.8 2.3E-17 7.9E-22 170.5 18.7 177 340-549 60-243 (571)
101 2o6s_A Variable lymphocyte rec 99.7 2.9E-17 9.8E-22 148.9 16.4 178 293-511 11-188 (208)
102 2xot_A Amphoterin-induced prot 99.7 9.1E-18 3.1E-22 165.8 13.2 156 416-572 41-202 (361)
103 2o6s_A Variable lymphocyte rec 99.7 4.2E-17 1.4E-21 147.8 16.4 174 390-577 10-184 (208)
104 2xot_A Amphoterin-induced prot 99.7 5.8E-18 2E-22 167.2 11.3 159 417-580 21-184 (361)
105 3sb4_A Hypothetical leucine ri 99.7 8.3E-18 2.9E-22 164.0 11.9 220 338-566 100-328 (329)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 3.5E-17 1.2E-21 149.3 14.3 152 391-549 15-166 (220)
107 3sb4_A Hypothetical leucine ri 99.7 4.7E-18 1.6E-22 165.7 9.1 227 288-543 100-328 (329)
108 1m9s_A Internalin B; cell inva 99.7 2E-17 7E-22 173.0 14.0 191 342-553 24-214 (605)
109 1h6t_A Internalin B; cell adhe 99.7 7.5E-17 2.6E-21 153.9 15.4 195 317-532 26-220 (291)
110 3e6j_A Variable lymphocyte rec 99.7 1.1E-16 3.9E-21 147.0 15.5 150 417-572 22-172 (229)
111 4ezg_A Putative uncharacterize 99.7 6.2E-17 2.1E-21 145.1 13.1 150 415-573 45-195 (197)
112 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 146.1 14.6 140 440-583 20-159 (229)
113 4fdw_A Leucine rich hypothetic 99.7 1.2E-15 4.2E-20 151.6 22.1 262 264-569 112-380 (401)
114 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.9E-21 145.2 14.0 111 438-549 55-165 (220)
115 4fdw_A Leucine rich hypothetic 99.7 1.3E-15 4.3E-20 151.5 21.4 253 288-583 112-369 (401)
116 4fs7_A Uncharacterized protein 99.7 1.5E-15 5.3E-20 151.8 20.7 329 181-564 65-393 (394)
117 1xeu_A Internalin C; cellular 99.7 3.1E-17 1.1E-21 154.0 7.6 107 438-554 84-190 (263)
118 3cvr_A Invasion plasmid antige 99.7 1.2E-15 4.1E-20 157.7 19.5 184 316-532 60-250 (571)
119 1m9s_A Internalin B; cell inva 99.7 6.4E-16 2.2E-20 161.7 15.8 206 315-541 21-226 (605)
120 2ell_A Acidic leucine-rich nuc 99.7 2.1E-16 7.3E-21 137.8 9.4 136 438-577 23-165 (168)
121 4fs7_A Uncharacterized protein 99.6 1.2E-14 4.1E-19 145.4 21.6 328 134-541 66-393 (394)
122 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.8E-20 136.9 11.5 134 436-575 41-175 (197)
123 1w8a_A SLIT protein; signaling 99.6 1.7E-15 5.7E-20 134.9 12.3 128 417-549 11-139 (192)
124 2wfh_A SLIT homolog 2 protein 99.6 3.5E-15 1.2E-19 132.8 12.3 127 417-549 13-139 (193)
125 1dce_A Protein (RAB geranylger 99.6 2.8E-18 9.6E-23 178.5 -9.1 121 440-566 442-567 (567)
126 1xeu_A Internalin C; cellular 99.6 3.9E-16 1.3E-20 146.5 6.3 170 314-503 18-187 (263)
127 2o6r_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 129.1 13.6 128 441-572 9-137 (177)
128 1w8a_A SLIT protein; signaling 99.6 2.7E-15 9.1E-20 133.6 9.9 130 390-526 11-140 (192)
129 2wfh_A SLIT homolog 2 protein 99.6 2.2E-14 7.5E-19 127.6 13.5 126 442-572 13-139 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 127.4 6.6 127 438-568 16-149 (149)
131 1a9n_A U2A', U2A'; complex (nu 99.6 7E-15 2.4E-19 129.0 8.5 132 437-572 17-153 (176)
132 2ell_A Acidic leucine-rich nuc 99.5 9.6E-15 3.3E-19 127.2 9.1 115 437-554 47-165 (168)
133 1dce_A Protein (RAB geranylger 99.5 6E-16 2.1E-20 160.9 1.4 213 69-321 349-566 (567)
134 2o6r_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 123.8 13.3 130 417-551 10-139 (177)
135 4gt6_A Cell surface protein; l 99.5 1.6E-12 5.4E-17 129.9 23.4 339 200-572 51-391 (394)
136 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.5E-19 123.5 6.6 112 463-576 16-130 (149)
137 4b8c_D Glucose-repressible alc 99.5 4.9E-15 1.7E-19 159.1 4.2 187 26-275 173-369 (727)
138 4gt6_A Cell surface protein; l 99.5 1.4E-12 4.8E-17 130.3 21.1 310 189-548 65-390 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.4 6.8E-14 2.3E-18 122.7 6.6 110 464-577 19-131 (176)
140 2r9u_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 116.3 11.3 109 441-553 14-122 (174)
141 3g39_A Variable lymphocyte rec 99.4 5.9E-13 2E-17 115.7 11.3 109 440-552 10-118 (170)
142 4b8c_D Glucose-repressible alc 99.4 1.5E-13 5.1E-18 147.6 6.7 176 387-576 173-359 (727)
143 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 113.6 11.0 106 417-527 12-117 (170)
144 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.7E-17 112.7 11.1 106 417-527 15-120 (174)
145 4h09_A Hypothetical leucine ri 99.3 1.7E-10 5.8E-15 114.7 24.2 138 438-581 216-354 (379)
146 4h09_A Hypothetical leucine ri 99.3 1.5E-10 5.3E-15 114.9 23.6 310 186-557 44-353 (379)
147 3un9_A NLR family member X1; l 99.3 1.9E-13 6.5E-18 134.5 0.9 186 24-250 70-282 (372)
148 3un9_A NLR family member X1; l 99.3 6.4E-13 2.2E-17 130.7 2.9 164 386-549 71-252 (372)
149 1ds9_A Outer arm dynein; leuci 99.3 4.8E-14 1.6E-18 126.3 -4.9 84 439-526 70-154 (198)
150 1ds9_A Outer arm dynein; leuci 99.2 4E-13 1.4E-17 120.3 -3.4 133 186-330 16-155 (198)
151 2ifg_A High affinity nerve gro 99.2 4.8E-11 1.6E-15 117.1 11.1 105 442-550 11-117 (347)
152 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.4E-15 113.3 9.4 103 418-525 12-116 (347)
153 1io0_A Tropomodulin; LRR prote 98.6 2.1E-08 7.2E-13 88.0 4.2 18 137-154 91-108 (185)
154 1io0_A Tropomodulin; LRR prote 98.6 7E-09 2.4E-13 91.0 0.0 119 17-154 27-166 (185)
155 2ra8_A Uncharacterized protein 98.5 1.3E-07 4.4E-12 92.0 8.0 60 486-547 277-341 (362)
156 2ra8_A Uncharacterized protein 98.5 2.7E-07 9.4E-12 89.7 9.7 82 186-273 137-227 (362)
157 3e4g_A ATP synthase subunit S, 98.3 1.5E-07 5E-12 80.2 1.0 85 465-549 62-153 (176)
158 3e4g_A ATP synthase subunit S, 98.1 5.1E-07 1.7E-11 76.8 1.7 82 488-570 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 1E-06 3.5E-11 81.1 1.8 80 485-565 167-257 (267)
160 1pgv_A TMD-1, tropomodulin TMD 97.9 8E-07 2.7E-11 77.1 -1.2 105 1-109 44-170 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 5.3E-06 1.8E-10 72.0 3.8 21 135-155 94-114 (197)
162 3rw6_A Nuclear RNA export fact 97.9 8E-06 2.7E-10 75.1 4.4 78 464-542 170-257 (267)
163 3rfe_A Platelet glycoprotein I 96.9 0.00069 2.3E-08 54.8 3.8 55 48-109 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.002 6.8E-08 52.1 4.5 53 29-83 11-68 (130)
165 2lz0_A Uncharacterized protein 79.8 1.8 6.1E-05 32.5 3.9 46 475-521 7-52 (100)
166 2lz0_A Uncharacterized protein 74.4 5.1 0.00018 29.9 5.1 45 451-497 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-56 Score=485.01 Aligned_cols=555 Identities=23% Similarity=0.184 Sum_probs=377.1
Q ss_pred ccccCCCcccee---ccccccccchhhhccccccccccccccccc-----ccceeeeecCCceeecCCc--cccccccce
Q psy11648 2 TLDLSHNKLSVL---NMATLYSNVTKLQHLGTTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPS--AFDNIDACY 71 (584)
Q Consensus 2 ~l~ls~~~~~~~---~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~--~~~~~~~~L 71 (584)
.|||+++.+++. .+.+ +..+++|+.++++.+.+..+|. ++|++|++++|.+.+..+. .+.++ ++|
T Consensus 54 ~L~L~~~~l~g~~~~l~~~----l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L 128 (768)
T 3rgz_A 54 SIDLSSKPLNVGFSAVSSS----LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGL 128 (768)
T ss_dssp EEECTTSCCCEEHHHHHHH----TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC-TTC
T ss_pred EEECCCCCcCCccCccChh----HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCC-CCC
Confidence 578888888764 3332 4455556555555555544333 5666666666666554444 55555 556
Q ss_pred eeEEEecCcccc-cccccccccccccceeeeecCCCceeeechhh---hccchhccc-----------------------
Q psy11648 72 DLTLKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT---LYSNVTKLQ----------------------- 124 (584)
Q Consensus 72 ~~~L~ls~n~i~-~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~---~~~~~~l~~----------------------- 124 (584)
+ +|++++|.+. .+|..++....+|+ +||+++|.+++..+.. +..+..+..
T Consensus 129 ~-~L~Ls~n~l~~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 129 K-FLNVSSNTLDFPGKVSGGLKLNSLE--VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp C-EEECCSSEEECCSSCCSCCCCTTCS--EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred C-EEECcCCccCCcCCHHHhccCCCCC--EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 6 6666666554 33444433444466 6666666665555443 222222211
Q ss_pred ---ccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcc
Q psy11648 125 ---HLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKI 200 (584)
Q Consensus 125 ---~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 200 (584)
.|.+++.++.+.++++|++|++++|.+++..+..+. .+++|++|+++ +......+.. .+++|++|++++|.+
T Consensus 206 ~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF 281 (768)
T ss_dssp ECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTT-TCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred ECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHh-cCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence 344443222255555555555555555443333322 22345555555 2222222211 345555555555555
Q ss_pred cccchhhhcC-CCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccc
Q psy11648 201 TDLNGNLFRH-LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279 (584)
Q Consensus 201 ~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~ 279 (584)
++..+..+.. +++|++|++++|.+.+. .+..+..+++|++|++++|.+. +.+|...+ ..+++|++|++++|.+++
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~-~~ip~~~l-~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGA--VPPFFGSCSLLESLALSSNNFS-GELPMDTL-LKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEEC--CCGGGGGCTTCCEEECCSSEEE-EECCHHHH-TTCTTCCEEECCSSEEEE
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCc--cchHHhcCCCccEEECCCCccc-CcCCHHHH-hcCCCCCEEeCcCCccCc
Confidence 5444444443 36777777777766655 5666777777777777777665 56666544 677777777777777765
Q ss_pred cccccccCCC-CCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhh
Q psy11648 280 IRNYSLYNLT-SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358 (584)
Q Consensus 280 ~~~~~l~~l~-~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 358 (584)
..+..+..++ +|++|++++|.+.......+....+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 5555666665 677777777766532222222112567888888888888777778888889999999999888888888
Q ss_pred hccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccccccccccccc
Q psy11648 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP 438 (584)
Q Consensus 359 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~ 438 (584)
+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+.. ++.|+.|++++|++++..+.. +..+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~---l~~L~~L~L~~N~l~~~~p~~-~~~l 513 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN---CTNLNWISLSNNRLTGEIPKW-IGRL 513 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG---CTTCCEEECCSSCCCSCCCGG-GGGC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc---CCCCCEEEccCCccCCcCChH-HhcC
Confidence 888899999999999888887888888899999999999888776665543 468889999999888554433 3347
Q ss_pred CcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCcc------------------------------------
Q psy11648 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT------------------------------------ 482 (584)
Q Consensus 439 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------------------------------ 482 (584)
++|++|++++|.+....+..+..+ ++|+.|++++|++.+..|.
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 889999999998874444667777 8899999998877643222
Q ss_pred ----------------------------------ccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcC
Q psy11648 483 ----------------------------------AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLT 528 (584)
Q Consensus 483 ----------------------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 528 (584)
.+..+++|+.||+++|.+++.+|..++.+++|+.|++++|++++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 2445678999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEcCCCcCC-ccCccccCCCCcceEECCCCCCC-CCCCC
Q psy11648 529 GEQFYFSFKLRILNISHNRLR-SLPRDVFSNTIIEKLDISYNQDK-IRPGR 577 (584)
Q Consensus 529 ~~~~~~~~~L~~L~L~~n~l~-~lp~~l~~~~~L~~l~l~~n~l~-~~p~~ 577 (584)
|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ .+|+.
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999999999999999 78999999999999999999998 77764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-55 Score=479.25 Aligned_cols=547 Identities=20% Similarity=0.181 Sum_probs=417.2
Q ss_pred CccccCCCccceeccccccccchhhhcccccccccccccc-ccc------ccceeeeecCCceeecCCcc---ccccccc
Q psy11648 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQG-IFN------SKLRELEITGKDLKFIDPSA---FDNIDAC 70 (584)
Q Consensus 1 ~~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~-l~~------~~L~~L~ls~n~~~~~~~~~---~~~~~~~ 70 (584)
++||||+|.+++..+.. ..++.+++||+|++++|.++. +|. ++|++|++++|.+.+..+.. +.++ ++
T Consensus 103 ~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l-~~ 179 (768)
T 3rgz_A 103 TSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GE 179 (768)
T ss_dssp CEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC-TT
T ss_pred CEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC-CC
Confidence 56888888888765541 127788888888998888775 332 78888888888888876655 5665 77
Q ss_pred eeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc----ccCce-eccchhhcCCccceee
Q psy11648 71 YDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ----HLGTT-ILKDREKLLSNLETLL 145 (584)
Q Consensus 71 L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~-~l~~~l~~~~~L~~L~ 145 (584)
|+ +|++++|.+...... ..+.+|+ +|++++|.+.+..+. ++.+..+.. .|.++ .+|..+.++++|++|+
T Consensus 180 L~-~L~Ls~n~l~~~~~~--~~l~~L~--~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 180 LK-HLAISGNKISGDVDV--SRCVNLE--FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp CC-EEECCSSEEESCCBC--TTCTTCC--EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred CC-EEECCCCcccccCCc--ccCCcCC--EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 88 888888877743332 4455588 888888888775555 666655433 67777 5677888888888888
Q ss_pred ccccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCcc
Q psy11648 146 LRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKL 224 (584)
Q Consensus 146 l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 224 (584)
+++|.+.+..+.. .+++|++|+++ +......+..+...+++|++|++++|.+.+..+..++++++|++|++++|.+
T Consensus 254 Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 254 ISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp CCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 8888877654433 45678888888 4444345555543458888888888888877777888888888888888887
Q ss_pred ceeecCCcc-ccccccceEEeecccccCCCCchhhHhhhcCC-CCCEEEccCccccccccccccC--CCCCcEEEcccCC
Q psy11648 225 QIIELNSNV-FDVFEKLQLLEISFSLFNSNEFPYYILNKNLN-TLEWLAMDNNNIKNIRNYSLYN--LTSLNYINLEYNK 300 (584)
Q Consensus 225 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~l~~--l~~L~~L~l~~~~ 300 (584)
.+. .+.. +..+++|++|++++|.+. +.+|..+ ..++ +|++|++++|.+++..+..+.. +++|++|++++|.
T Consensus 331 ~~~--ip~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 331 SGE--LPMDTLLKMRGLKVLDLSFNEFS-GELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp EEE--CCHHHHTTCTTCCEEECCSSEEE-ECCCTTH--HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred cCc--CCHHHHhcCCCCCEEeCcCCccC-ccccHHH--HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 754 4544 788888888888888876 5677766 3555 8888888888887655555555 6778888888888
Q ss_pred CcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCC
Q psy11648 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380 (584)
Q Consensus 301 l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 380 (584)
++...+..+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 406 l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 406 FTGKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EEEECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccCHHHhc--CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 77444444444 7888888888888887777778888888888888888887777778888888888888888887777
Q ss_pred ccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCC-CCChhhH
Q psy11648 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFL 459 (584)
Q Consensus 381 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~ 459 (584)
..+..+++|++|++++|.+++..+..+.. ++.|+.|++++|++.+..+.. ...+++|+.|++++|.+. .+|...+
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~---l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGR---LENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGG---CTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhc---CCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHh
Confidence 78888888888888888888766665544 457888888888877544332 334778888888888765 4443322
Q ss_pred ---------------------------------------------------------------------HHhhCCCcEEE
Q psy11648 460 ---------------------------------------------------------------------QTFADSLRKLY 470 (584)
Q Consensus 460 ---------------------------------------------------------------------~~~~~~L~~L~ 470 (584)
..+ ++|+.|+
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l-~~L~~Ld 638 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLD 638 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS-BCCCEEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc-ccccEEE
Confidence 223 6789999
Q ss_pred ccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 471 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
+++|++.+..|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..++.|++|++++|++++
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -cCccccCCCCcceEECCCCCCC
Q psy11648 551 -LPRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 551 -lp~~l~~~~~L~~l~l~~n~l~ 572 (584)
+|. ...+.++....+.+|+.-
T Consensus 719 ~iP~-~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 719 PIPE-MGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp ECCS-SSSGGGSCGGGGCSCTEE
T ss_pred cCCC-chhhccCCHHHhcCCchh
Confidence 664 455566677777788643
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-53 Score=458.79 Aligned_cols=552 Identities=24% Similarity=0.320 Sum_probs=408.6
Q ss_pred CccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeE
Q psy11648 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLT 74 (584)
Q Consensus 1 ~~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~ 74 (584)
++|++++|.|+++++.+ +..+++||+|++++|.+++++. ++|++|++++|.+.++....|.++ ++|+ +
T Consensus 28 ~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~-~ 101 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLT-E 101 (680)
T ss_dssp SEEECCSSCCCCCCGGG----GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCS-E
T ss_pred cEEECCCCCCCCcCHHH----HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCC-E
Confidence 35667777777666654 5566667777777777666543 667777777777776666666666 6677 7
Q ss_pred EEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc----ccCceeccc-hh--hcCCccceeecc
Q psy11648 75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ----HLGTTILKD-RE--KLLSNLETLLLR 147 (584)
Q Consensus 75 L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~~l~~-~l--~~~~~L~~L~l~ 147 (584)
|++++|++..++...|..+.+|+ +|++++|.+.+..+..++.+..+.. .|.++++++ .+ ..+++|++|+++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLI--TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCC--EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred EECCCCccCccChhHccccCCCC--EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 77777777766666565555577 7777777666655555554444322 455554443 22 234566666666
Q ss_pred ccccccccccccchhhHHHHHhhcCCC-CCCcccchhHh--hccCCcEEEcCCCcccccchhhhcCCCC--CCEEEcCCC
Q psy11648 148 CNKITDLNGNLFRHLQKSIVKAKKNNN-NNEDQVSDREK--LLSNLETLLLRCNKITDLNGNLFRHLYN--LQELSLSFN 222 (584)
Q Consensus 148 ~n~i~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~ 222 (584)
+|.+++..+..+.. +++|+.+++++. ........+.. ..++|+.|+++++.+.+..+..+.+++. |++|++++|
T Consensus 180 ~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 180 SNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred CCcccccChhhhhh-hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 66665555444332 223444444311 11100000000 2378899999999988888878887754 999999999
Q ss_pred ccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCcccc---------ccccccccCCCCCcE
Q psy11648 223 KLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK---------NIRNYSLYNLTSLNY 293 (584)
Q Consensus 223 ~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~---------~~~~~~l~~l~~L~~ 293 (584)
.+.+. .+..|..+++|++|++++|.+. +..+..+ ..+++|++|+++++... .+....+..+++|++
T Consensus 259 ~l~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 259 NLNVV--GNDSFAWLPQLEYFFLEYNNIQ-HLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp CCCEE--CTTTTTTCTTCCEEECCSCCBS-EECTTTT--TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred CcCcc--CcccccCcccccEeeCCCCccC-ccChhhh--cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 98887 6788999999999999999886 3334444 78999999999886433 222336788899999
Q ss_pred EEcccCCCcccccccccccccCCccEEEcCCCccc--ccccccccC--CCCCcEEEccCCcCCCcChhhhccCcCCCEEe
Q psy11648 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE--LIESDTFYN--LKELNTITLSYNLLKSIKTTSFKNLNNMLNIV 369 (584)
Q Consensus 294 L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 369 (584)
|++++|.+..++...+.. +++|++|++++|.+. ......+.. .+.|+.+++++|.+.++.+..+..+++|+.|+
T Consensus 334 L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 334 LNMEDNDIPGIKSNMFTG--LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp EECCSCCBCCCCTTTTTT--CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCccCCCChhHhcc--ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 999999999888777766 899999999998743 232223322 35899999999999988888889999999999
Q ss_pred ccCCCCCccC-CccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccc-cccccccCcccEEEcc
Q psy11648 370 LSFNQIKYIY-PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE-NDKKQAPIYIKSLDLS 447 (584)
Q Consensus 370 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~ 447 (584)
+++|.+.+.. +..+..+++|++|++++|.+.+.....+.. .+.++.+++++|.+..... ...+..+++|+.|+++
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL---VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT---CTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc---CcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 9999987643 367889999999999999988777666554 4688999999998864322 2334568999999999
Q ss_pred CCCCCCCChhhHHHhhCCCcEEEccCCcccccCc--------cccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA--------TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519 (584)
Q Consensus 448 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 519 (584)
+|.++.+++..+.++ ++|++|++++|++.+... ..+.++++|++|++++|.+....+..|..+++|++|++
T Consensus 489 ~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 489 NNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp SSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 999999998888888 999999999999886532 24788999999999999999776677999999999999
Q ss_pred CCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc--CCCCcceEECCCCCCC
Q psy11648 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF--SNTIIEKLDISYNQDK 572 (584)
Q Consensus 520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~--~~~~L~~l~l~~n~l~ 572 (584)
++|+++++++..|..+++|++|++++|+++.++...+ .+++|+.+++++|++.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 9999999999999999999999999999999887655 4699999999999998
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-52 Score=452.35 Aligned_cols=554 Identities=23% Similarity=0.292 Sum_probs=454.5
Q ss_pred ccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEE
Q psy11648 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTL 75 (584)
Q Consensus 2 ~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L 75 (584)
.+|.+++.++.++.. +. +++++|++++|.+++++. ++|++|++++|.+.++.+..+.++ ++|+ +|
T Consensus 8 ~~~cs~~~L~~ip~~-----~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L 78 (680)
T 1ziw_A 8 VADCSHLKLTQVPDD-----LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLK-VL 78 (680)
T ss_dssp EEECCSSCCSSCCSC-----SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCC-EE
T ss_pred eeECCCCCccccccc-----cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcC-EE
Confidence 478899999987753 32 678888999999998775 899999999999999999999998 8999 99
Q ss_pred EecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc----ccCceec-cchhhcCCccceeeccccc
Q psy11648 76 KITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ----HLGTTIL-KDREKLLSNLETLLLRCNK 150 (584)
Q Consensus 76 ~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~~l-~~~l~~~~~L~~L~l~~n~ 150 (584)
++++|++..+|...|..+.+|+ +|++++|.+.+..+..|+.+..+.. .|.++.. |..+.++++|++|++++|.
T Consensus 79 ~L~~n~l~~l~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 79 NLQHNELSQLSDKTFAFCTNLT--ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCS--EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred ECCCCccCccChhhhccCCCCC--EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 9999999999998888888899 9999999999888777877766543 6777754 4567888899999999988
Q ss_pred cccccccccch-hhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhh---cCCCCCCEEEcCCCccc
Q psy11648 151 ITDLNGNLFRH-LQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLF---RHLYNLQELSLSFNKLQ 225 (584)
Q Consensus 151 i~~~~~~~~~~-~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~ 225 (584)
+++..+..+.. .+++|+.|+++ +......+..+. .+++|+.|++.++.+.......+ ...++|++|++++|.+.
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 88776655433 23578888888 566666676675 77888888888877654222111 13578999999999998
Q ss_pred eeecCCcccccccc--ceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCc-
Q psy11648 226 IIELNSNVFDVFEK--LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS- 302 (584)
Q Consensus 226 ~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~- 302 (584)
+. .+..+..++. |++|++++|.+. .++...+ ..+++|++|++++|.+++..+.++..+++|++|+++++...
T Consensus 236 ~~--~~~~~~~l~~~~L~~L~Ls~n~l~--~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 236 TT--SNTTFLGLKWTNLTMLDLSYNNLN--VVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp EE--CTTTTGGGGGSCCCEEECTTSCCC--EECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred cc--ChhHhhccCcCCCCEEECCCCCcC--ccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 87 7888888865 999999999986 4544444 79999999999999999988889999999999999986433
Q ss_pred --------ccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCC--cChhhhcc--CcCCCEEec
Q psy11648 303 --------KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS--IKTTSFKN--LNNMLNIVL 370 (584)
Q Consensus 303 --------~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~--~~~L~~L~l 370 (584)
.+....+.. +++|++|++++|.+++..+..+..+++|+++++++|.+.. .....+.. .+.|+.+++
T Consensus 311 ~~~~~~lp~i~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQW--LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp ------CCEECTTTTTT--CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred ccccccccccChhhccc--CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 233334444 8999999999999999888889999999999999997542 22233333 368999999
Q ss_pred cCCCCCccCCccCCCCCCCcEEecCCCCCCCC-ChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCC
Q psy11648 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNN 449 (584)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 449 (584)
++|.+.+..+.++..+++|+.|++++|.+.+. +...+. .++.++.+++++|.+.......+ ..+++|+.|++++|
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR---GLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRV 464 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT---TCTTCCEEECCSCSEEECCTTTT-TTCTTCCEEECTTS
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc---CcccccEEecCCCCcceeChhhh-hcCcccccchhccc
Confidence 99999999888999999999999999998753 334443 45689999999999887765443 45899999999999
Q ss_pred CCCC--CChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc--------cccCCCCCccEEEC
Q psy11648 450 RIQE--VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK--------RTFIGMPNLQIIDL 519 (584)
Q Consensus 450 ~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L~l 519 (584)
.+.. ..+..+..+ ++|+.|++++|++.++++..|.++++|++|++++|.+.+..+ ..|..+++|++|++
T Consensus 465 ~l~~~~~~p~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 465 ALKNVDSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp CCBCTTCSSCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred cccccccCCcccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 8752 223567777 999999999999999998899999999999999999987532 23788999999999
Q ss_pred CCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc-CCCCcceEECCCCCCCCCCCCCC
Q psy11648 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-SNTIIEKLDISYNQDKIRPGRES 579 (584)
Q Consensus 520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~-~~~~L~~l~l~~n~l~~~p~~~~ 579 (584)
++|+++.+++..|.++++|++|++++|+++.+|...+ .+++|+.|++++|.++.++...|
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 9999999998899999999999999999999998765 56999999999999998887654
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-50 Score=432.47 Aligned_cols=507 Identities=19% Similarity=0.199 Sum_probs=384.3
Q ss_pred ccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCC
Q psy11648 29 GTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH 105 (584)
Q Consensus 29 r~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~ 105 (584)
+++++++..++.+|. +++++|++++|.++++.+..|.++ ++|+ +|++++|++..++...|....+|+ +|++++
T Consensus 15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~--~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL-INLT-FLDLTRCQIYWIHEDTFQSQHRLD--TLVLTA 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTC-TTCS-EEECTTCCCCEECTTTTTTCTTCC--EEECTT
T ss_pred ceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccC-ccce-EEECCCCccceeChhhccCccccC--eeeCCC
Confidence 345677777777666 677777777777777766677776 6777 777777777766666666666677 777777
Q ss_pred CceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcccchhH
Q psy11648 106 NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDRE 184 (584)
Q Consensus 106 ~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~ 184 (584)
|.+.+..+..|+.+ ++|++|++++|.++++.+..+. .+++|++|+++ +....+....+.
T Consensus 91 n~l~~~~~~~~~~l-------------------~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~ 150 (606)
T 3t6q_A 91 NPLIFMAETALSGP-------------------KALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGF 150 (606)
T ss_dssp CCCSEECTTTTSSC-------------------TTCCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTC
T ss_pred CcccccChhhhccc-------------------ccccEeeccccCcccCCcchhc-cCCcccEEECCCCcccccCccccc
Confidence 77666554444333 3444444444444433332221 12234444444 222222222333
Q ss_pred hhccCCcEEEcCCCcccccchhhhcCCCCCC--EEEcCCCccceeecCCccccccccceEEeecccccC-----------
Q psy11648 185 KLLSNLETLLLRCNKITDLNGNLFRHLYNLQ--ELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN----------- 251 (584)
Q Consensus 185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~----------- 251 (584)
.+++|+.|++++|.++...+..++.+++|+ +|++++|.+.+. .+..+.. .+|+.|++++|...
T Consensus 151 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~--~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (606)
T 3t6q_A 151 -PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI--EPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNST 226 (606)
T ss_dssp -CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE--CTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCE
T ss_pred -CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc--ChhHhhh-ccccccccCCchhHHHHhhhccccc
Confidence 367777777777777777666777777777 777777777665 4444433 46677766655310
Q ss_pred -------------CCCchhhHhhhcCC--CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCC
Q psy11648 252 -------------SNEFPYYILNKNLN--TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316 (584)
Q Consensus 252 -------------~~~l~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~ 316 (584)
...++...+ ..+. +|++|++++|.++++++..+..+++|++|++++|.++.+|..+.. +++
T Consensus 227 l~~l~~~~~~~~~~~~i~~~~~-~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~---l~~ 302 (606)
T 3t6q_A 227 IQSLWLGTFEDMDDEDISPAVF-EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG---LST 302 (606)
T ss_dssp EEEEECCCCTTSCCCCCCGGGG-GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCS---CTT
T ss_pred hhheechhhccccccccChhHh-chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcc---ccc
Confidence 012222222 2332 799999999999999988899999999999999999988876544 899
Q ss_pred ccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcC-hhhhccCcCCCEEeccCCCCCccC--CccCCCCCCCcEEe
Q psy11648 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIK-TTSFKNLNNMLNIVLSFNQIKYIY--PNAFVNLPNLVKLD 393 (584)
Q Consensus 317 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~ 393 (584)
|++|++++|.++...+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+.. +..+..+++|++|+
T Consensus 303 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382 (606)
T ss_dssp CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE
Confidence 999999999999988888999999999999999887543 445889999999999999998775 66788999999999
Q ss_pred cCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccC
Q psy11648 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF 473 (584)
Q Consensus 394 l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 473 (584)
+++|.+.+..+..+.. ++.++.+++++|.+........+..+++|++|++++|.+...++..+..+ ++|++|++++
T Consensus 383 l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~ 458 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKE---CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQG 458 (606)
T ss_dssp CCSCSCEEECTTTTTT---CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTT
T ss_pred CCCCcCCcCCHHHhcC---CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCC
Confidence 9999988876665554 46899999999999887666656678999999999999998877888888 9999999999
Q ss_pred Cccccc---CccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 474 NEIKHL---DATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 474 n~l~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
|++.+. .+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..++.+..++.| +|++++|++++
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 998763 23568899999999999999999989999999999999999999999999999999999 99999999998
Q ss_pred cCcc-ccCCCCcceEECCCCCCC
Q psy11648 551 LPRD-VFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 551 lp~~-l~~~~~L~~l~l~~n~l~ 572 (584)
+|.. +..+++|+.|++++|+++
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTCCEE
T ss_pred cCHhhcccCCCCCEEeCCCCCcc
Confidence 7654 566799999999999997
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-49 Score=424.83 Aligned_cols=498 Identities=18% Similarity=0.195 Sum_probs=353.1
Q ss_pred cccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCC
Q psy11648 30 TTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106 (584)
Q Consensus 30 ~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~ 106 (584)
+++++++.++.+|. +++++|++++|.+.++.+..|.++ ++|+ +|++++|++..++...|....+|+ +|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L~Ls~n~l~~i~~~~~~~l~~L~--~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF-SELQ-WLDLSRCEIETIEDKAWHGLHHLS--NLILTGN 90 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTC-TTCC-EEECTTCCCCEECTTTTTTCTTCC--EEECTTC
T ss_pred ceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCC-ccCc-EEeCCCCcccccCHHHhhchhhcC--EeECCCC
Confidence 44666666666655 566666666666666655566665 5666 666666666665555555555566 6666666
Q ss_pred ceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCc-ccchhH
Q psy11648 107 KLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNED-QVSDRE 184 (584)
Q Consensus 107 ~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~-~~~~~~ 184 (584)
.+++..+..| .++++|++|++++|.+++..+..+.. +++|++|+++ +..... .|..+.
T Consensus 91 ~l~~~~p~~~-------------------~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~ 150 (606)
T 3vq2_A 91 PIQSFSPGSF-------------------SGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFS 150 (606)
T ss_dssp CCCCCCTTSS-------------------TTCTTCCEEECTTSCCCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cccccChhhc-------------------CCcccCCEEEccCCccccccccccCC-CCCCCEEeCCCCcccceechHhHh
Confidence 6554433333 23334444444444444333322221 2234444444 222221 133443
Q ss_pred hhccCCcEEEcCCCcccccchhhhcCCCCCC----EEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHh
Q psy11648 185 KLLSNLETLLLRCNKITDLNGNLFRHLYNLQ----ELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYIL 260 (584)
Q Consensus 185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~ 260 (584)
.+++|++|++++|.++...+..++.+++|+ ++++++|.+... .+..+... +|+.|++++|.+..+.++..+
T Consensus 151 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~--~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~- 225 (606)
T 3vq2_A 151 -NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI--QDQAFQGI-KLHELTLRGNFNSSNIMKTCL- 225 (606)
T ss_dssp -TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEE--CTTTTTTC-EEEEEEEESCCSCHHHHHHHH-
T ss_pred -hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCccee--CcccccCc-eeeeeeccCCccchhHHHHHh-
Confidence 566666666666666665555555444433 666666666655 34444333 666666666655411223222
Q ss_pred hhcCCCCCEEEc---------------------------------cCccccccccccccCCCCCcEEEcccCCCcccccc
Q psy11648 261 NKNLNTLEWLAM---------------------------------DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307 (584)
Q Consensus 261 ~~~~~~L~~L~l---------------------------------~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~ 307 (584)
..++.++.+++ ..+.+.+..+. +..+++|+.++++++.+..++
T Consensus 226 -~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-- 301 (606)
T 3vq2_A 226 -QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-- 301 (606)
T ss_dssp -HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--
T ss_pred -ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--
Confidence 45555555444 44555555553 788899999999999998877
Q ss_pred cccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCcc--CCccCCC
Q psy11648 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI--YPNAFVN 385 (584)
Q Consensus 308 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~ 385 (584)
.+.. +++|+.|++++|.+..+ + .+ .++.|++|++++|...+.. .+..+++|+.|++++|.+++. .+..+..
T Consensus 302 ~l~~--~~~L~~L~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 302 DVPK--HFKWQSLSIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp CCCT--TCCCSEEEEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred hccc--cccCCEEEcccccCccc-c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 3333 88999999999999555 4 35 8899999999999554432 566889999999999998876 3667788
Q ss_pred CCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCC
Q psy11648 386 LPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS 465 (584)
Q Consensus 386 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 465 (584)
+++|++|++++|.+.+.+ . .+...+.++.+++++|.+....+...+..+++|++|++++|.+....+..+..+ ++
T Consensus 375 ~~~L~~L~L~~n~l~~~~-~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~ 449 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMS-A---NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TS 449 (606)
T ss_dssp CSCCCEEECCSCSEEEEC-C---CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-TT
T ss_pred CCcccEeECCCCccccch-h---hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-CC
Confidence 999999999999987755 2 233567899999999999888765555678999999999999987766778888 99
Q ss_pred CcEEEccCCcccc-cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcC
Q psy11648 466 LRKLYLDFNEIKH-LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544 (584)
Q Consensus 466 L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~ 544 (584)
|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..|..+++|++|++++|+++++.|..+..+++|++|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 9999999999987 467789999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCcCCccCccccCCC-CcceEECCCCCCC
Q psy11648 545 HNRLRSLPRDVFSNT-IIEKLDISYNQDK 572 (584)
Q Consensus 545 ~n~l~~lp~~l~~~~-~L~~l~l~~n~l~ 572 (584)
+|+++.+|..+..++ +|+.|++++|++.
T Consensus 530 ~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 530 FNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 999999999988886 6999999999998
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-48 Score=416.40 Aligned_cols=504 Identities=20% Similarity=0.257 Sum_probs=355.3
Q ss_pred ccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEE
Q psy11648 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTL 75 (584)
Q Consensus 2 ~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L 75 (584)
+||+++|.|+++++.+ +..+++||+|++++|.++.++. ++|++|++++|.+.+..+..+.++ ++|+ +|
T Consensus 37 ~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L 110 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KALK-HL 110 (606)
T ss_dssp EEECTTCCCSEECTTT----STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC-TTCC-EE
T ss_pred EEEccCCccCcCChhH----hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc-cccc-Ee
Confidence 4555555555555443 4455555555555555554422 555555555555555555555554 5555 55
Q ss_pred EecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccccc
Q psy11648 76 KITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN 155 (584)
Q Consensus 76 ~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~ 155 (584)
++++|++..++...+....+|+ +|++++|.+.+.... .+..+++|++|++++|.+++..
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~--~L~L~~n~l~~~~~~-------------------~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLE--SLYLGSNHISSIKLP-------------------KGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCC--EEECCSSCCCCCCCC-------------------TTCCCTTCCEEECCSSCCCEEC
T ss_pred eccccCcccCCcchhccCCccc--EEECCCCcccccCcc-------------------cccCCcccCEEEcccCcccccC
Confidence 5555555555434444444455 555555555443222 2333667777777777776665
Q ss_pred ccccchhhHHHH--HhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccce---eec
Q psy11648 156 GNLFRHLQKSIV--KAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQI---IEL 229 (584)
Q Consensus 156 ~~~~~~~~~~L~--~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~ 229 (584)
+..+... ++|+ .|+++ +......+..+. ...|+.|+++++.. .+..+..+.+++...+....+.. ...
T Consensus 170 ~~~~~~l-~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 170 KEDMSSL-QQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp HHHHHTT-TTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred hhhhhhh-cccceeEEecCCCccCccChhHhh--hccccccccCCchh---HHHHhhhccccchhheechhhcccccccc
Confidence 5444332 3455 45555 555555555553 47899999998862 23344455544433332221111 111
Q ss_pred CCccccccc--cceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccc
Q psy11648 230 NSNVFDVFE--KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307 (584)
Q Consensus 230 ~~~~~~~l~--~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~ 307 (584)
.+..+..+. +|+.|++++|.+. .++...+ ..+++|++|++++|.++.++. .+..+++|++|++++|.+..+++.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~--~~~~~~~-~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFF--NISSNTF-HCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCS--SCCTTTT-TTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ChhHhchhhcCceeEEEeecCccC--ccCHHHh-ccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchh
Confidence 234444443 7889999998885 5655555 788899999999998887665 688889999999999988877665
Q ss_pred cccccccCCccEEEcCCCcccc-cccccccCCCCCcEEEccCCcCCCcC--hhhhccCcCCCEEeccCCCCCccCCccCC
Q psy11648 308 LFHFNIHKRLKEIRLSNNYLEL-IESDTFYNLKELNTITLSYNLLKSIK--TTSFKNLNNMLNIVLSFNQIKYIYPNAFV 384 (584)
Q Consensus 308 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (584)
.+.. +++|++|++++|.+.. ..+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+.
T Consensus 320 ~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 320 SASN--FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp CGGG--CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred hhhc--cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 5555 8899999999988774 44445788899999999999888765 56778889999999999998888788888
Q ss_pred CCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCC--C-hhhHHH
Q psy11648 385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV--P-VNFLQT 461 (584)
Q Consensus 385 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~-~~~~~~ 461 (584)
.+++|++|++++|.+.+..+.. .+...+.++.|++++|.+....+.. +..+++|++|++++|.++.. + ...+..
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQS--PFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCC--TTTTCTTCCEEECTTCCCBTTCTTT-TTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred CCccCCeEECCCCcCCCcccch--hhhCcccCCEEECCCCccCCcCHHH-HhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 8999999999999887654322 1224568899999999887765443 33478999999999988752 2 245777
Q ss_pred hhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEE
Q psy11648 462 FADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRIL 541 (584)
Q Consensus 462 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L 541 (584)
+ ++|++|++++|++.+.++..|..+++|++|++++|.+++..+..+..+++| .|++++|++++++|..+..+++|++|
T Consensus 475 l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 475 L-GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp C-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred C-CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 7 999999999999999988899999999999999999999999999999999 99999999999999999999999999
Q ss_pred EcCCCcCC
Q psy11648 542 NISHNRLR 549 (584)
Q Consensus 542 ~L~~n~l~ 549 (584)
++++|.++
T Consensus 553 ~l~~N~~~ 560 (606)
T 3t6q_A 553 NLRQNPLD 560 (606)
T ss_dssp ECTTCCEE
T ss_pred eCCCCCcc
Confidence 99999887
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-48 Score=424.24 Aligned_cols=515 Identities=22% Similarity=0.222 Sum_probs=337.7
Q ss_pred ccccccccccccc--ccceeeeecCCceeecCCccccccccceeeEEEecCcc-cccccccccccccccceeeeecCCCc
Q psy11648 31 TILKGDQLQGIFN--SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQ-IEELPSGLFDKIENIEQMTLDLSHNK 107 (584)
Q Consensus 31 L~l~~~~l~~l~~--~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~-i~~l~~~~~~~~~~L~~~~L~ls~~~ 107 (584)
.|+++++++.||. +++++|++++|.+.++.+..|.++ ++|+ +|++++|. +..++...|..+.+|+ +|+|++|.
T Consensus 9 ~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l-~~L~-~LdLs~n~~~~~i~~~~f~~L~~L~--~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFL-EQLQ-LLELGSQYTPLTIDKEAFRNLPNLR--ILDLGSSK 84 (844)
T ss_dssp EEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSC-CSCS-EEEECTTCCCCEECTTTTSSCTTCC--EEECTTCC
T ss_pred EEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCccc-ccCe-EEeCCCCCCccccCHHHhcCCCCCC--EEECCCCc
Confidence 3455555555554 555555555555555555555554 4555 55555552 3344444444444455 55555555
Q ss_pred eeeechhhhccchhccc----ccCcee-ccc--hhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcc
Q psy11648 108 LSVLNMATLYSNVTKLQ----HLGTTI-LKD--REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQ 179 (584)
Q Consensus 108 l~~~~~~~~~~~~~l~~----~n~l~~-l~~--~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~ 179 (584)
+.+..+..|+.+..+.. .|.++. +|. .+.++++|++|++++|.+.+..+......+++|++|+++ +.+....
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 55444444433333211 233331 232 256677888888888877776543333344556666666 4445555
Q ss_pred cchhHhhc--cCCcEEEcCCCcccccchhhhcCCCC------CCEEEcCCCccceeecCCcccccc---ccceEEeeccc
Q psy11648 180 VSDREKLL--SNLETLLLRCNKITDLNGNLFRHLYN------LQELSLSFNKLQIIELNSNVFDVF---EKLQLLEISFS 248 (584)
Q Consensus 180 ~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~l~~~~~~~~~~~~l---~~L~~L~l~~~ 248 (584)
+..+. .+ ++|+.|++++|.+....+..+..+++ |++|++++|.+... .+..+... .+++.+.+..+
T Consensus 165 ~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 165 EHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD--ITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp SGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT--TTSGGGGTSCSCCBSEEECCSS
T ss_pred HHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh--HHHHHHhhcCcccccceecccc
Confidence 55554 33 56666666666666544444444433 66666666655433 33333322 44555555532
Q ss_pred ccCC-------CCchhhHhhhc--CCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccE
Q psy11648 249 LFNS-------NEFPYYILNKN--LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKE 319 (584)
Q Consensus 249 ~~~~-------~~l~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~ 319 (584)
.... .......+ .. .++|++|++++|.+....+..+..+++|++|++++|.++.++...+.. +++|+.
T Consensus 242 ~~~~~~~~~~l~~~~~~~f-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~ 318 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTF-AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG--LDNLQV 318 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTT-TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT--CSSCCE
T ss_pred cccccccccccCCCChhhh-hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC--CCCCCE
Confidence 2110 01111112 22 367888888888888777777888888888888888888777666665 788888
Q ss_pred EEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCC
Q psy11648 320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399 (584)
Q Consensus 320 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 399 (584)
|++++|.++...+..+..+++|+.|++++|.+..+.+..+..+++|+.|++++|.++.+. .+++|+.+++++|.+
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKL 393 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCc
Confidence 888888888777777888888888888888888777777788888888888888877542 267888888888887
Q ss_pred CCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChh-hHHHhhCCCcEEEccCCcccc
Q psy11648 400 KDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN-FLQTFADSLRKLYLDFNEIKH 478 (584)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~ 478 (584)
+..+.. ...++.+++++|.++..+.......+++|+.|++++|.++.++.. .+..+ ++|+.|++++|.+..
T Consensus 394 ~~l~~~-------~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 394 VTLPKI-------NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGENMLQL 465 (844)
T ss_dssp CCCCCC-------CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSC-TTCCBCEEESCCCSS
T ss_pred cccccc-------ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccC-CccccccCCCCcccc
Confidence 755321 346688888888888776655555678888888888888755432 23344 788888888888763
Q ss_pred -----cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy11648 479 -----LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553 (584)
Q Consensus 479 -----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~ 553 (584)
..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|+++++++..+. ++|+.|++++|++++++.
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 3345677888888899998888888888888888999999998888888877765 788889999988887665
Q ss_pred cccCCCCcceEECCCCCCC
Q psy11648 554 DVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 554 ~l~~~~~L~~l~l~~n~l~ 572 (584)
..+ ++|+.+++++|++.
T Consensus 544 ~~~--~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 544 DVF--VSLSVLDITHNKFI 560 (844)
T ss_dssp CCC--SSCCEEEEEEECCC
T ss_pred hHh--CCcCEEEecCCCcc
Confidence 443 58888888888876
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6e-46 Score=396.22 Aligned_cols=486 Identities=20% Similarity=0.201 Sum_probs=396.0
Q ss_pred ceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccc
Q psy11648 46 LRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQH 125 (584)
Q Consensus 46 L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~ 125 (584)
-+++++++++++.++.... ++++ +|++++|++..++...|....+|+ +|++++|.+++..+.
T Consensus 13 ~~~~~c~~~~l~~ip~~~~----~~l~-~L~Ls~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~i~~~----------- 74 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP----SSTK-NIDLSFNPLKILKSYSFSNFSELQ--WLDLSRCEIETIEDK----------- 74 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC----TTCC-EEECTTSCCCEECTTTTTTCTTCC--EEECTTCCCCEECTT-----------
T ss_pred CCceEccCCCcccCCCCCC----CCcC-EEECCCCCcCEeChhhccCCccCc--EEeCCCCcccccCHH-----------
Confidence 4578999999999876443 6789 999999999999998888888899 999999998875544
Q ss_pred cCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccc-c
Q psy11648 126 LGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITD-L 203 (584)
Q Consensus 126 n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~ 203 (584)
++.++++|++|++++|.+++..+..|.. +++|++|+++ +......+..+. .+++|++|++++|.+.. .
T Consensus 75 --------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 75 --------AWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp --------TTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCC
T ss_pred --------HhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCccccccccccC-CCCCCCEEeCCCCccccee
Confidence 4566789999999999999987777654 4679999999 556666656665 78999999999999886 3
Q ss_pred chhhhcCCCCCCEEEcCCCccceeecCCccccccccce----EEeecccccCCCCchhhHhhhcCCCCCEEEccCcccc-
Q psy11648 204 NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ----LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK- 278 (584)
Q Consensus 204 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~- 278 (584)
.+..++++++|++|++++|.+.+. .+..+..+.+|+ ++++++|.+. .++...+ ...+|++|++++|.++
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~~l~~L~l~~n~l~--~~~~~~~--~~~~L~~L~L~~n~~~~ 218 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTI--TVNDLQFLRENPQVNLSLDMSLNPID--FIQDQAF--QGIKLHELTLRGNFNSS 218 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEE--CTTTTHHHHHCTTCCCEEECTTCCCC--EECTTTT--TTCEEEEEEEESCCSCH
T ss_pred chHhHhhcCCCCEEEccCCcceec--ChhhhhhhhccccccceeeccCCCcc--eeCcccc--cCceeeeeeccCCccch
Confidence 467888999999999999988877 677777776654 8999999885 6666665 3448999999998876
Q ss_pred ccccccccCCCCCcEEEcc---------------------------------cCCCcccccccccccccCCccEEEcCCC
Q psy11648 279 NIRNYSLYNLTSLNYINLE---------------------------------YNKISKIHNNLFHFNIHKRLKEIRLSNN 325 (584)
Q Consensus 279 ~~~~~~l~~l~~L~~L~l~---------------------------------~~~l~~i~~~~~~~~~~~~L~~L~l~~~ 325 (584)
...+..+..++.|+.+++. .+.+...... +.. +++|+.++++++
T Consensus 219 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~--l~~L~~L~l~~~ 295 (606)
T 3vq2_A 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHC--LANVSAMSLAGV 295 (606)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGG--GTTCSEEEEESC
T ss_pred hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-ccc--CCCCCEEEecCc
Confidence 3444456677777766653 2333322222 333 789999999999
Q ss_pred cccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCC--
Q psy11648 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-- 403 (584)
Q Consensus 326 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-- 403 (584)
.+.... .+..+++|+.|++++|.+..+ + .+ .+++|+.|++++|...... .+..+++|++|++++|.+++..
T Consensus 296 ~~~~l~--~l~~~~~L~~L~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 296 SIKYLE--DVPKHFKWQSLSIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp CCCCCC--CCCTTCCCSEEEEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred cchhhh--hccccccCCEEEcccccCccc-c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch
Confidence 998764 688899999999999999544 4 44 8999999999999655432 5678999999999999987653
Q ss_pred hhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh-hhHHHhhCCCcEEEccCCcccccCcc
Q psy11648 404 LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDAT 482 (584)
Q Consensus 404 ~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~ 482 (584)
+..+. ..+.++.+++++|.+...+ ..+..+++|+.|++++|.+...++ ..+..+ ++|++|++++|.+.+..+.
T Consensus 369 ~~~~~---~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 369 SYSDL---GTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp CHHHH---CCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEEECTTSCCEECCTT
T ss_pred hhhhc---cCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEEECcCCCCCccchh
Confidence 33333 4568999999999998876 334558999999999999887665 577787 9999999999999998888
Q ss_pred ccCCCcccCeeeccCccccc-ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCcc-CccccCCCC
Q psy11648 483 AFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL-PRDVFSNTI 560 (584)
Q Consensus 483 ~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~ 560 (584)
.+..+++|++|++++|.+.+ ..+..+..+++|++|++++|+++++++..+..+++|++|++++|+++.+ |..+..+++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 89999999999999999998 4788899999999999999999999999999999999999999999976 778888899
Q ss_pred cceEECCCCCCCCCCCCCCCCC
Q psy11648 561 IEKLDISYNQDKIRPGRESNPR 582 (584)
Q Consensus 561 L~~l~l~~n~l~~~p~~~~~~~ 582 (584)
|+.|++++|+++.+|.. |...
T Consensus 523 L~~L~l~~N~l~~~p~~-~~~l 543 (606)
T 3vq2_A 523 LSTLDCSFNRIETSKGI-LQHF 543 (606)
T ss_dssp CCEEECTTSCCCCEESC-GGGS
T ss_pred CCEEECCCCcCcccCHh-Hhhh
Confidence 99999999999999987 4433
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=404.89 Aligned_cols=507 Identities=22% Similarity=0.222 Sum_probs=355.2
Q ss_pred eeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCce-eeechhhhccchhccc-
Q psy11648 47 RELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMATLYSNVTKLQ- 124 (584)
Q Consensus 47 ~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l-~~~~~~~~~~~~~l~~- 124 (584)
+..++++++++.++. + .++++ +|||++|.+..++...|....+|+ +||+++|.. ..+.+.+|+.+..+..
T Consensus 7 ~~~dcs~~~L~~vP~--l---p~~l~-~LdLs~N~i~~i~~~~~~~l~~L~--~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--V---LNTTE-RLLLSFNYIRTVTASSFPFLEQLQ--LLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCSSCCCS--S---CTTCC-EEEEESCCCCEECSSSCSSCCSCS--EEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCCCCCCCC--C---CCCcC-EEECCCCcCCccChhHCcccccCe--EEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 467899999999876 2 26799 999999999988888888888899 999999954 4444555665554322
Q ss_pred ---ccCceec-cchhhcCCccceeecccccccccccc-ccchhhHHHHHhhcC-CCCCCccc-chhHhhccCCcEEEcCC
Q psy11648 125 ---HLGTTIL-KDREKLLSNLETLLLRCNKITDLNGN-LFRHLQKSIVKAKKN-NNNNEDQV-SDREKLLSNLETLLLRC 197 (584)
Q Consensus 125 ---~n~l~~l-~~~l~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~l~-~~~~~~~~-~~~~~~~~~L~~L~l~~ 197 (584)
+|.++.+ |.++.++++|++|++++|.+.+..+. .+...+++|++|+++ +......+ ..+. .+++|+.|++++
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG-KLNSLKSIDFSS 157 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG-TCSSCCEEEEES
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh-hCCCCCEEECCC
Confidence 4555543 45566666666666666665543221 111223345555555 33333322 2232 445555555555
Q ss_pred CcccccchhhhcCC--CCCCEEEcCCCccceeecCCcccccccc------ceEEeecccccCCCCchhhHhh-hcCCCCC
Q psy11648 198 NKITDLNGNLFRHL--YNLQELSLSFNKLQIIELNSNVFDVFEK------LQLLEISFSLFNSNEFPYYILN-KNLNTLE 268 (584)
Q Consensus 198 ~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~l~~~~~~-~~~~~L~ 268 (584)
|.+....+..+..+ ++|+.|++++|.+.+. .+..+..+++ |+.|++++|.+. +..+..+.. ...++++
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSR--VSVDWGKCMNPFRNMVLEILDVSGNGWT-VDITGNFSNAISKSQAF 234 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC--CCCCCCSSSCTTTTCCBSEEBCSSCCSS-TTTTSGGGGTSCSCCBS
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccc--cccchhhcCCccccCceeEEecCCCcCc-hhHHHHHHhhcCccccc
Confidence 54444444444433 4455555555444432 2222332222 555555555443 222222210 0123344
Q ss_pred EEEccCcc---------ccccccccccCC--CCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccC
Q psy11648 269 WLAMDNNN---------IKNIRNYSLYNL--TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYN 337 (584)
Q Consensus 269 ~L~l~~~~---------l~~~~~~~l~~l--~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 337 (584)
.+.++.+. +.......+..+ ++|++|++++|.+..++...+.. +++|+.|++++|.++...+..+..
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET--LKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS--CCCCCEEEEESCCCCEECTTTTTT
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc--CCCCCEEECCCCcCCCCChHHhcC
Confidence 44443211 111122223332 67999999999888877776666 889999999999998888888888
Q ss_pred CCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCc
Q psy11648 338 LKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM 417 (584)
Q Consensus 338 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~ 417 (584)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++++.. .+.++
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~ 384 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--------IPSIP 384 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--------CCSCS
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--------CCCcc
Confidence 9999999999999888878888889999999999999988877788889999999999998876432 45778
Q ss_pred eEECCCCccccccccccccccCcccEEEccCCCCCCCChhh-HHHhhCCCcEEEccCCcccccCcc-ccCCCcccCeeec
Q psy11648 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNF-LQTFADSLRKLYLDFNEIKHLDAT-AFGNLDVLELLSL 495 (584)
Q Consensus 418 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l 495 (584)
.+++++|+++.++.. ..+++.+++++|.++.++... +..+ ++|++|++++|++.+.++. .+..+++|++|++
T Consensus 385 ~L~l~~N~l~~l~~~-----~~~l~~L~ls~N~l~~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 385 DIFLSGNKLVTLPKI-----NLTANLIHLSENRLENLDILYFLLRV-PHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp EEEEESCCCCCCCCC-----CTTCCEEECCSCCCCSSTTHHHHTTC-TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred hhccCCCCccccccc-----ccccceeecccCccccCchhhhhhcC-CccceeeCCCCcccccccccccccCCccccccC
Confidence 999999988866543 467899999999998876433 3356 9999999999999866443 4567899999999
Q ss_pred cCcccc-----cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCC
Q psy11648 496 EHNNIA-----VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570 (584)
Q Consensus 496 ~~n~~~-----~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~ 570 (584)
++|.+. +..+..|..+++|+.|++++|+++++++..|..+++|++|+|++|+++.+|...+. ++|+.|++++|+
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQ 537 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEEC
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCc
Confidence 999987 34456788999999999999999999999999999999999999999999887776 999999999999
Q ss_pred CCCCCCCCCCCC
Q psy11648 571 DKIRPGRESNPR 582 (584)
Q Consensus 571 l~~~p~~~~~~~ 582 (584)
++.+++..|..+
T Consensus 538 l~~~~~~~~~~L 549 (844)
T 3j0a_A 538 LLAPNPDVFVSL 549 (844)
T ss_dssp CCCCCSCCCSSC
T ss_pred CCCCChhHhCCc
Confidence 998888777543
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-45 Score=388.93 Aligned_cols=504 Identities=20% Similarity=0.237 Sum_probs=370.4
Q ss_pred ccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCC
Q psy11648 29 GTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH 105 (584)
Q Consensus 29 r~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~ 105 (584)
+.+++++.+++.+|. +++++|++++|.+.++.+..|.++ ++|+ +|++++|++..++...|..+.+|+ +|++++
T Consensus 10 ~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L~Ls~n~i~~i~~~~~~~l~~L~--~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQ-VLDLSRCEIQTIEDGAYQSLSHLS--TLILTG 85 (570)
T ss_dssp TEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTC-SSCC-EEECTTCCCCEECTTTTTTCTTCC--EEECTT
T ss_pred cEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCC-CCce-EEECCCCcCCccCcccccCchhCC--EEeCcC
Confidence 445777777777776 677888888888777777777776 7788 888888877777777777766688 888888
Q ss_pred CceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCc-ccchh
Q psy11648 106 NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNED-QVSDR 183 (584)
Q Consensus 106 ~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~-~~~~~ 183 (584)
|.+++..+..| .++++|++|++++|.++.++...+. .+++|++|+++ +....+ .|..+
T Consensus 86 n~l~~~~~~~~-------------------~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~ 145 (570)
T 2z63_A 86 NPIQSLALGAF-------------------SGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYF 145 (570)
T ss_dssp CCCCEECTTTT-------------------TTCTTCCEEECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGG
T ss_pred CcCCccCHhhh-------------------cCccccccccccccccccCCCcccc-ccccccEEecCCCccceecChhhh
Confidence 77766544433 3445566666665555554432222 22344444444 222221 24455
Q ss_pred HhhccCCcEEEcCCCcccccchhhhcCCCCC----CEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648 184 EKLLSNLETLLLRCNKITDLNGNLFRHLYNL----QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI 259 (584)
Q Consensus 184 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 259 (584)
. .+++|++|++++|.+....+..++.+++| +++++++|.+... .+..+... +|+.|++++|......++..+
T Consensus 146 ~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~--~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~ 221 (570)
T 2z63_A 146 S-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEI-RLHKLTLRNNFDSLNVMKTCI 221 (570)
T ss_dssp G-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE--CTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred c-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec--CHHHhccC-cceeEecccccccccchhhhh
Confidence 4 67888888888888887777777777777 7888888887776 56666655 788888887754423344443
Q ss_pred hhhcCCCCCEEEccCccc------cccccccccCCCC--CcEEEcccC-CCcccccccccccccCCccEEEcCCCccccc
Q psy11648 260 LNKNLNTLEWLAMDNNNI------KNIRNYSLYNLTS--LNYINLEYN-KISKIHNNLFHFNIHKRLKEIRLSNNYLELI 330 (584)
Q Consensus 260 ~~~~~~~L~~L~l~~~~l------~~~~~~~l~~l~~--L~~L~l~~~-~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~ 330 (584)
..++.++...+....+ ..+....+..++. ++.++++++ .+.......+.. +++|+.|++++|.++..
T Consensus 222 --~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~l 297 (570)
T 2z63_A 222 --QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERV 297 (570)
T ss_dssp --HTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG--GTTCSEEEEESCEECSC
T ss_pred --cCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC--cCcccEEEecCccchhh
Confidence 5777777665543221 2222223333332 456666666 444444444544 89999999999998865
Q ss_pred ccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCC--hhhhc
Q psy11648 331 ESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN--LNVFS 408 (584)
Q Consensus 331 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~ 408 (584)
+..+..+ .|++|++++|.+..+.. ..+++|+.+++++|.+....+. ..+++|++|++++|.+++.. +..+.
T Consensus 298 -~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 298 -KDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp -CBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred -hhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence 4556777 99999999999885533 4678999999999988776443 67899999999999987653 23332
Q ss_pred ccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh-hhHHHhhCCCcEEEccCCcccccCccccCCC
Q psy11648 409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487 (584)
Q Consensus 409 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 487 (584)
..+.++.+++++|.+...+.. +..+++|++|++++|.+...++ ..+..+ ++|++|++++|.+.+..+..+.++
T Consensus 371 ---~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 371 ---GTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp ---TCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTC
T ss_pred ---ccCccCEEECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcC
Confidence 456899999999999887765 4568999999999999876643 567777 999999999999998888889999
Q ss_pred cccCeeeccCcccc-cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEE
Q psy11648 488 DVLELLSLEHNNIA-VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLD 565 (584)
Q Consensus 488 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~ 565 (584)
++|++|++++|.+. +.+|..+..+++|++|++++|+++++.|..|..+++|++|++++|+++.+|.. +..+++|+.|+
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 99999999999997 56788999999999999999999999999999999999999999999987754 66789999999
Q ss_pred CCCCCCC-CCCCC
Q psy11648 566 ISYNQDK-IRPGR 577 (584)
Q Consensus 566 l~~n~l~-~~p~~ 577 (584)
+++|+++ ..|..
T Consensus 525 l~~N~~~~~~~~~ 537 (570)
T 2z63_A 525 LHTNPWDCSCPRI 537 (570)
T ss_dssp CCSSCBCCCTTTT
T ss_pred ecCCcccCCCcch
Confidence 9999998 55543
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.1e-44 Score=377.53 Aligned_cols=481 Identities=20% Similarity=0.225 Sum_probs=378.2
Q ss_pred cccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCC
Q psy11648 30 TTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106 (584)
Q Consensus 30 ~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~ 106 (584)
+.|++++.++.+|. +++++|++++|.+.++.+..+.++ ++|+ +|++++|++..++...|....+|+ +|++++|
T Consensus 9 ~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~--~L~Ls~n 84 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC-ANLQ-VLILKSSRINTIEGDAFYSLGSLE--HLDLSDN 84 (549)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSC-TTCC-EEECTTSCCCEECTTTTTTCTTCC--EEECTTS
T ss_pred eEECCCCccccccccCCCCccEEECcCCccCccChhhhhcC-Cccc-EEECCCCCcCccChhhccccccCC--EEECCCC
Confidence 35788889999987 899999999999999988889988 8999 999999999998887777777799 9999999
Q ss_pred ceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhh
Q psy11648 107 KLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKL 186 (584)
Q Consensus 107 ~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 186 (584)
.+++..+. .+.++++|++|++++|.+++... +..+. .
T Consensus 85 ~l~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~-~ 121 (549)
T 2z81_A 85 HLSSLSSS-------------------WFGPLSSLKYLNLMGNPYQTLGV-----------------------TSLFP-N 121 (549)
T ss_dssp CCCSCCHH-------------------HHTTCTTCCEEECTTCCCSSSCS-----------------------SCSCT-T
T ss_pred ccCccCHH-------------------HhccCCCCcEEECCCCcccccch-----------------------hhhhh-c
Confidence 98865543 35566899999999998886532 12233 7
Q ss_pred ccCCcEEEcCCCc-ccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648 187 LSNLETLLLRCNK-ITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265 (584)
Q Consensus 187 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~ 265 (584)
+++|++|++++|. +....+..+.++++|++|++++|.+.+. .+..+..+++|++|+++++... .++..++ ..++
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~-~~l~ 196 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSESA--FLLEIFA-DILS 196 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECSBST--THHHHHH-HSTT
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--ChhhhhccccCceEecccCccc--ccchhhH-hhcc
Confidence 8999999999998 5566667889999999999999999887 7888999999999999999874 6777766 7799
Q ss_pred CCCEEEccCccccccc---cccccCCCCCcEEEcccCCCccccc----ccccccccCCccEEEcCCCccccccc------
Q psy11648 266 TLEWLAMDNNNIKNIR---NYSLYNLTSLNYINLEYNKISKIHN----NLFHFNIHKRLKEIRLSNNYLELIES------ 332 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~---~~~l~~l~~L~~L~l~~~~l~~i~~----~~~~~~~~~~L~~L~l~~~~~~~~~~------ 332 (584)
+|++|++++|.+++.. ......+++|+.|+++++.+..... ..... +++|+.+++++|.+.+...
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~--~~~L~~l~l~~~~~~~~~~~~~~~~ 274 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY--ILELSEVEFDDCTLNGLGDFNPSES 274 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG--CTTCCEEEEESCEEECCSCCCCCTT
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh--hccccccccccccccccccccccch
Confidence 9999999999988752 2234557889999999997763211 11122 7889999999998776421
Q ss_pred ccccCCCCCcEEEccCCcCCCcC-----hhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhh
Q psy11648 333 DTFYNLKELNTITLSYNLLKSIK-----TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVF 407 (584)
Q Consensus 333 ~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 407 (584)
..+..+.+++.+.+.++.+.... +..+...++|+.+++++|.+..+....+..+++|++|++++|.+.+..+...
T Consensus 275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 354 (549)
T 2z81_A 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354 (549)
T ss_dssp TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccch
Confidence 23466788899999888765421 1223445789999999999886643333578999999999999876543322
Q ss_pred cccccCCCCceEECCCCccccccc-cccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCC
Q psy11648 408 SNITSKQTPMNLNLSNNYITNLYE-NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486 (584)
Q Consensus 408 ~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 486 (584)
......+.++.|++++|+++.++. ...+..+++|++|++++|.++.+|. .+..+ ++|++|++++|++..++...
T Consensus 355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~-~~L~~L~Ls~N~l~~l~~~~--- 429 (549)
T 2z81_A 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWP-EKMRFLNLSSTGIRVVKTCI--- 429 (549)
T ss_dssp TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCCCC-TTCCEEECTTSCCSCCCTTS---
T ss_pred hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hhccc-ccccEEECCCCCcccccchh---
Confidence 233456789999999999987653 2334558899999999999998874 45555 89999999999988665432
Q ss_pred CcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEE
Q psy11648 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLD 565 (584)
Q Consensus 487 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~ 565 (584)
.++|++|++++|.+++.. ..+++|++|++++|+++.++. ...+++|++|++++|+++.+|.. +..+++|+.|+
T Consensus 430 ~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 430 PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE
Confidence 268999999999998753 578999999999999997765 35689999999999999987664 67789999999
Q ss_pred CCCCCCC-CCC
Q psy11648 566 ISYNQDK-IRP 575 (584)
Q Consensus 566 l~~n~l~-~~p 575 (584)
+++|+++ ..|
T Consensus 504 l~~N~~~~~~~ 514 (549)
T 2z81_A 504 LHTNPWDCSCP 514 (549)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCccCCCc
Confidence 9999987 443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-43 Score=376.48 Aligned_cols=478 Identities=18% Similarity=0.211 Sum_probs=312.7
Q ss_pred ccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceee
Q psy11648 27 HLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT 100 (584)
Q Consensus 27 ~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~ 100 (584)
++++|++++|++++++. ++|++|++++|++.++.+..|.++ ++|+ +|++++|++..++...|..+.+|+ +
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~-~L~L~~n~l~~~~~~~~~~l~~L~--~ 104 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLS-TLILTGNPIQSLALGAFSGLSSLQ--K 104 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCC-EEECTTCCCCEECTTTTTTCTTCC--E
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCc-hhCC-EEeCcCCcCCccCHhhhcCccccc--c
Confidence 45666777776666543 667777777777766666666665 6677 777777776666666666666677 7
Q ss_pred eecCCCceeeechhhhccchhccc----ccCcee--ccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCC
Q psy11648 101 LDLSHNKLSVLNMATLYSNVTKLQ----HLGTTI--LKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174 (584)
Q Consensus 101 L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~~--l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~ 174 (584)
|++++|.+++.....++.+..+.. .|.++. +|..+.++++|++|++++|.+++..+
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~------------------ 166 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC------------------ 166 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG------------------
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH------------------
Confidence 777777666544433333332211 333332 35556666666666666666665533
Q ss_pred CCCcccchhHhhccCC----cEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeeccccc
Q psy11648 175 NNEDQVSDREKLLSNL----ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLF 250 (584)
Q Consensus 175 ~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 250 (584)
..+. .+++| +.|++++|.+....+..+... +|++|++++|.... ...+..+..++.++...+....+
T Consensus 167 ------~~~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~-~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 167 ------TDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL-NVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp ------GGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT-THHHHHHHTTTTCEEEEEEEEEC
T ss_pred ------HHcc-chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccc-cchhhhhcCccccceeeeccccc
Confidence 3333 45566 677888887777766666654 67777777663211 11233444555555444432211
Q ss_pred CC----CCchhhHhhhcCC--CCCEEEccCc-cccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcC
Q psy11648 251 NS----NEFPYYILNKNLN--TLEWLAMDNN-NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323 (584)
Q Consensus 251 ~~----~~l~~~~~~~~~~--~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~ 323 (584)
.. ..++...+ ..++ .++.++++++ .+.+..+..+..+++|++|++++|.+..++..+.. + +|+.|+++
T Consensus 238 ~~~~~l~~~~~~~~-~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~---~-~L~~L~l~ 312 (570)
T 2z63_A 238 RNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN---F-GWQHLELV 312 (570)
T ss_dssp CCCSSCEECCTTTT-GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC---C-CCSEEEEE
T ss_pred cCchhhhhcchhhh-ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhcc---C-CccEEeec
Confidence 10 11121211 2222 2445555555 44444445566666677777776666665554333 4 66677777
Q ss_pred CCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccC--CccCCCCCCCcEEecCCCCCCC
Q psy11648 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY--PNAFVNLPNLVKLDLQDNKLKD 401 (584)
Q Consensus 324 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~ 401 (584)
+|.+..... ..++.|+.+++++|.+.+..+. ..+++|+.|++++|.+.... +..+..+++|++|++++|.+.+
T Consensus 313 ~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 387 (570)
T 2z63_A 313 NCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387 (570)
T ss_dssp SCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred cCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence 666664332 3456667777777666554332 45667777777777666543 3455667777777777776665
Q ss_pred CChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCccc-ccC
Q psy11648 402 FNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK-HLD 480 (584)
Q Consensus 402 ~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~ 480 (584)
.+.. ...++.++.+++++|.+........+..+++|++|++++|.+...++..+..+ ++|++|++++|.+. +..
T Consensus 388 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 388 MSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp EEEE----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEE
T ss_pred cccc----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC-CcCcEEECcCCcCccccc
Confidence 4432 22445677777777777666554445568899999999999887776788888 99999999999987 455
Q ss_pred ccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 481 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
+..+..+++|++|++++|.+++..|..|..+++|++|++++|+++++++..|..+++|++|++++|.++.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 6788999999999999999999989999999999999999999999999999999999999999999884
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-43 Score=367.86 Aligned_cols=449 Identities=18% Similarity=0.203 Sum_probs=270.9
Q ss_pred CccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeE
Q psy11648 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLT 74 (584)
Q Consensus 1 ~~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~ 74 (584)
++||+++|.+++++.. +. ++|++|++++|.+++++. ++|++|++++|++.++.++.|.++ ++|+ +
T Consensus 3 ~~l~ls~n~l~~ip~~-----~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~-~ 73 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD-----LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELE-Y 73 (520)
T ss_dssp CEEECTTSCCSSCCCS-----CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCC-E
T ss_pred ceEecCCCCccccccc-----cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCC-E
Confidence 3567777777765543 22 566666777777776553 677777777777777666667666 6677 7
Q ss_pred EEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccc
Q psy11648 75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDL 154 (584)
Q Consensus 75 L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~ 154 (584)
|++++|+++.+|.. ...+|+ +|++++|.+++.. +|..++++++|++|++++|.+++.
T Consensus 74 L~Ls~N~l~~lp~~---~l~~L~--~L~L~~N~l~~~~------------------~p~~~~~l~~L~~L~L~~n~l~~~ 130 (520)
T 2z7x_B 74 LDLSHNKLVKISCH---PTVNLK--HLDLSFNAFDALP------------------ICKEFGNMSQLKFLGLSTTHLEKS 130 (520)
T ss_dssp EECCSSCCCEEECC---CCCCCS--EEECCSSCCSSCC------------------CCGGGGGCTTCCEEEEEESSCCGG
T ss_pred EecCCCceeecCcc---ccCCcc--EEeccCCcccccc------------------chhhhccCCcceEEEecCcccchh
Confidence 77777777776665 344477 7777777665421 233455566777777777766542
Q ss_pred cccccchhhHHHHHhhcCCCCCCcccchhHhhccCC--cEEEcCCCcc--cccchhhhcCCC-CCCEEEcCCCccceeec
Q psy11648 155 NGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNL--ETLLLRCNKI--TDLNGNLFRHLY-NLQELSLSFNKLQIIEL 229 (584)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~ 229 (584)
.+. .+++| +.|++++|.+ ....+..+..+. ....+++++|.+.+. .
T Consensus 131 ---------------------------~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~-~ 181 (520)
T 2z7x_B 131 ---------------------------SVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF-I 181 (520)
T ss_dssp ---------------------------GGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC-C
T ss_pred ---------------------------hcc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhh-h
Confidence 111 34555 7777777766 444444444443 222445555554332 1
Q ss_pred CCccccccccceEEeecccc-------cCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCc
Q psy11648 230 NSNVFDVFEKLQLLEISFSL-------FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302 (584)
Q Consensus 230 ~~~~~~~l~~L~~L~l~~~~-------~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 302 (584)
....+..+++|+.+++++|. +. +.++ .+ ..+++|++|+++++.+++....
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~-~l--~~l~~L~~L~l~~~~l~~~~~~------------------- 238 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFL-SILA-KL--QTNPKLSNLTLNNIETTWNSFI------------------- 238 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHH-HHHH-GG--GGCTTCCEEEEEEEEEEHHHHH-------------------
T ss_pred hhhhhhcccceeeccccccccccccceee-cchh-hh--ccccchhhccccccccCHHHHH-------------------
Confidence 23345555666666666653 21 1222 11 3444555555544443321100
Q ss_pred ccccccccccccCCccEEEcCCCcccccccccc-----cCCCCCcEEEccCCcCCCcChhhhccC---cCCCEEeccCCC
Q psy11648 303 KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF-----YNLKELNTITLSYNLLKSIKTTSFKNL---NNMLNIVLSFNQ 374 (584)
Q Consensus 303 ~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~ 374 (584)
.+.... ..++|++|++++|.+++..+..+ ..++.|+.+++++|.+ .+....+..+ .+|+.|++++|.
T Consensus 239 ~~~~~~----~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 239 RILQLV----WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHH----HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHh----hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCc
Confidence 000000 02344555555554443333333 5566666677766666 2221233222 457777777776
Q ss_pred CCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCC
Q psy11648 375 IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV 454 (584)
Q Consensus 375 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 454 (584)
+.... ....+++|++|++++|.+++..+..+. .+++|++|++++|.++.+
T Consensus 314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~----------------------------~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCG----------------------------HLTELETLILQMNQLKEL 363 (520)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC----------------------------CCSSCCEEECCSSCCCBH
T ss_pred ccccc--chhhCCcccEEEeECCccChhhhhhhc----------------------------cCCCCCEEEccCCccCcc
Confidence 65442 124667777777777776654333221 246777777777777754
Q ss_pred Ch--hhHHHhhCCCcEEEccCCcccc-cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccc
Q psy11648 455 PV--NFLQTFADSLRKLYLDFNEIKH-LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531 (584)
Q Consensus 455 ~~--~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 531 (584)
+. ..+..+ ++|++|++++|++.+ ++...+..+++|++|++++|.+++..+..+. ++|++|++++|+++.+++..
T Consensus 364 ~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~ 440 (520)
T 2z7x_B 364 SKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQV 440 (520)
T ss_dssp HHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGG
T ss_pred ccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhh
Confidence 42 445666 788888888888876 5555677788888888888888776665443 68888888888888665544
Q ss_pred ccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEECCCCCCC
Q psy11648 532 FYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 532 ~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~l~~n~l~ 572 (584)
..+++|++|++++|+++.+|.. +..+++|+.|++++|+++
T Consensus 441 -~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 441 -VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 4788888888888888888876 666788888888888887
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-42 Score=369.85 Aligned_cols=351 Identities=20% Similarity=0.250 Sum_probs=237.0
Q ss_pred hccCCcEEEcCCCccccc-----------------chhhhc--CCCCCCEEEcCCCccceeecCCccccccccceEEeec
Q psy11648 186 LLSNLETLLLRCNKITDL-----------------NGNLFR--HLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~ 246 (584)
.+++|++|++++|.+++. .|..+. ++++|++|++++|.+.+. .|..+..+++|++|+++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECc
Confidence 567777777777776663 555666 888888888888877765 67778888888888888
Q ss_pred ccc-cCCC-CchhhHhhhcC------CCCCEEEccCcccccccc-ccccCCCCCcEEEcccCCCc-ccccccccccccCC
Q psy11648 247 FSL-FNSN-EFPYYILNKNL------NTLEWLAMDNNNIKNIRN-YSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKR 316 (584)
Q Consensus 247 ~~~-~~~~-~l~~~~~~~~~------~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~-~i~~~~~~~~~~~~ 316 (584)
+|. +. + .+|..+ ..+ ++|++|++++|.++.++. ..+..+++|++|++++|.++ .++ .+.. +++
T Consensus 282 ~n~~l~-~~~lp~~~--~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~--l~~ 354 (636)
T 4eco_A 282 CNRGIS-GEQLKDDW--QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGS--EIK 354 (636)
T ss_dssp TCTTSC-HHHHHHHH--HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEE--EEE
T ss_pred CCCCCc-cccchHHH--HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCC--CCC
Confidence 887 65 4 577666 344 788888888888885443 16788888888888888887 666 3333 788
Q ss_pred ccEEEcCCCcccccccccccCCCC-CcEEEccCCcCCCcChhhhccCc--CCCEEeccCCCCCccCCccCC-------CC
Q psy11648 317 LKEIRLSNNYLELIESDTFYNLKE-LNTITLSYNLLKSIKTTSFKNLN--NMLNIVLSFNQIKYIYPNAFV-------NL 386 (584)
Q Consensus 317 L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~ 386 (584)
|+.|++++|.++.+ +..+..+++ |++|++++|.++.+ +..+.... +|+.|++++|.+.+..|..+. .+
T Consensus 355 L~~L~L~~N~l~~l-p~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQITEI-PANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEEEC-CTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccccc-cHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 88888888888743 445777777 88888888877743 44444433 677888888877776666666 66
Q ss_pred CCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhh---
Q psy11648 387 PNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA--- 463 (584)
Q Consensus 387 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~--- 463 (584)
++|++|++++|.++.++...+.. +++|++|++++|.++.+|...+....
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~----------------------------l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFST----------------------------GSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHT----------------------------TCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CCCCEEECcCCccCcCCHHHHcc----------------------------CCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 67777777777777655444332 34455555555555555444333220
Q ss_pred ---CCCcEEEccCCcccccCcccc-CCCcccCeeeccCcccccccccccCCCCCccEEEC------CCCCCCCcCccccc
Q psy11648 464 ---DSLRKLYLDFNEIKHLDATAF-GNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL------SFNEISMLTGEQFY 533 (584)
Q Consensus 464 ---~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l------s~n~i~~~~~~~~~ 533 (584)
++|++|++++|++..++...+ ..+++|++|++++|.+++ +|..+..+++|++|++ ++|++.+..|..+.
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 256666666666664433222 256666666666666665 5556666666666666 45666666777777
Q ss_pred CCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCC
Q psy11648 534 FSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRE 578 (584)
Q Consensus 534 ~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~ 578 (584)
.+++|++|++++|+++.+|..+. ++|+.|++++|+++.++...
T Consensus 564 ~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 564 LCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp GCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEECTT
T ss_pred cCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccccHHh
Confidence 77788888888887777777655 67888888888777665443
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.9e-41 Score=353.44 Aligned_cols=465 Identities=20% Similarity=0.230 Sum_probs=362.6
Q ss_pred eeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccC
Q psy11648 48 ELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG 127 (584)
Q Consensus 48 ~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~ 127 (584)
+.++++++++.++.... ++|+ +|++++|++..++...|..+.+|+ +|++++|.+++..+.
T Consensus 9 ~c~~~~~~l~~ip~~~~----~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~--~L~Ls~n~i~~~~~~------------- 68 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT----AAMK-SLDLSFNKITYIGHGDLRACANLQ--VLILKSSRINTIEGD------------- 68 (549)
T ss_dssp EEECTTSCCSSCCSCCC----TTCC-EEECCSSCCCEECSSTTSSCTTCC--EEECTTSCCCEECTT-------------
T ss_pred eEECCCCccccccccCC----CCcc-EEECcCCccCccChhhhhcCCccc--EEECCCCCcCccChh-------------
Confidence 35777788887766443 5688 899999988888776677777799 999999888765443
Q ss_pred ceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccccc-chh
Q psy11648 128 TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL-NGN 206 (584)
Q Consensus 128 l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~ 206 (584)
++.++++|++|++++|.+++..+ ..+. .+++|++|++++|.++.. .+.
T Consensus 69 ------~~~~l~~L~~L~Ls~n~l~~~~~------------------------~~~~-~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 69 ------AFYSLGSLEHLDLSDNHLSSLSS------------------------SWFG-PLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp ------TTTTCTTCCEEECTTSCCCSCCH------------------------HHHT-TCTTCCEEECTTCCCSSSCSSC
T ss_pred ------hccccccCCEEECCCCccCccCH------------------------HHhc-cCCCCcEEECCCCcccccchhh
Confidence 35556889999999998887633 2343 789999999999999864 455
Q ss_pred hhcCCCCCCEEEcCCCc-cceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccc
Q psy11648 207 LFRHLYNLQELSLSFNK-LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL 285 (584)
Q Consensus 207 ~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 285 (584)
.++++++|++|++++|. +... .+..+..+++|++|++++|.+. +..|..+ ..+++|++|++++|.+...+...+
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~ 192 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEI--RRIDFAGLTSLNELEIKALSLR-NYQSQSL--KSIRDIHHLTLHLSESAFLLEIFA 192 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEETTCC-EECTTTT--TTCSEEEEEEEECSBSTTHHHHHH
T ss_pred hhhccCCccEEECCCCcccccc--CHhhhhcccccCeeeccCCccc-ccChhhh--hccccCceEecccCcccccchhhH
Confidence 78899999999999997 4554 4568899999999999999986 4566665 789999999999998887766555
Q ss_pred cCCCCCcEEEcccCCCcccc---cccccccccCCccEEEcCCCccccccc----ccccCCCCCcEEEccCCcCCCcC---
Q psy11648 286 YNLTSLNYINLEYNKISKIH---NNLFHFNIHKRLKEIRLSNNYLELIES----DTFYNLKELNTITLSYNLLKSIK--- 355 (584)
Q Consensus 286 ~~l~~L~~L~l~~~~l~~i~---~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~--- 355 (584)
..+++|++|++++|.++.++ ...... +++|+.|++.+|.+++..+ ..+..++.++.+++++|.+.+..
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~ 270 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEV--SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCC--CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC
T ss_pred hhcccccEEEccCCccccccccccchhhh--hhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc
Confidence 67899999999999988652 222233 7899999999998875332 23466789999999999776532
Q ss_pred ---hhhhccCcCCCEEeccCCCCCccC-----CccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccc
Q psy11648 356 ---TTSFKNLNNMLNIVLSFNQIKYIY-----PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427 (584)
Q Consensus 356 ---~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~ 427 (584)
...+..+++++.+.+.++.+.... +..+...++|+.+++++|.+..++...+. ..+.++.|++++|.+.
T Consensus 271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~---~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ---HLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH---HCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh---cCccccEEEccCCccc
Confidence 123456788999999888765431 11123357899999999999877765543 3468999999999998
Q ss_pred cccc--cccccccCcccEEEccCCCCCCCCh--hhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648 428 NLYE--NDKKQAPIYIKSLDLSNNRIQEVPV--NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503 (584)
Q Consensus 428 ~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 503 (584)
+... ......+++|++|++++|.++.++. ..+..+ ++|++|++++|++..++ ..+..+++|++|++++|.+...
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~l 425 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVV 425 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSCC
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCccCC-hhhcccccccEEECCCCCcccc
Confidence 6432 2223457999999999999998764 457777 99999999999998664 4678899999999999998754
Q ss_pred cccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP 583 (584)
Q Consensus 504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~ 583 (584)
.. .+ .++|++|++++|++++.+ ..+++|++|++++|+++.+|. ...+++|+.|++++|+++.+|+..|...+
T Consensus 426 ~~-~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 426 KT-CI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp CT-TS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred cc-hh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence 32 22 369999999999999864 468999999999999999997 45679999999999999998887776543
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-40 Score=355.66 Aligned_cols=500 Identities=18% Similarity=0.195 Sum_probs=344.8
Q ss_pred ccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCC
Q psy11648 29 GTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH 105 (584)
Q Consensus 29 r~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~ 105 (584)
+..++++.+++.||. +++++|||++|.|+++.+.+|.++ ++|+ +|||++|+|..++.+.|....+|+ +|+|++
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l-~~L~-~L~Ls~N~i~~i~~~~f~~L~~L~--~L~Ls~ 109 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQ-VLDLSRCEIQTIEDGAYQSLSHLS--TLILTG 109 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTC-TTCC-EEECTTCCCCEECTTTTTTCTTCC--EEECTT
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCC-CCCC-EEECCCCcCCCcChhHhcCCCCCC--EEEccC
Confidence 456888889999998 799999999999999999999998 8999 999999999999999999888899 999999
Q ss_pred CceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcc-cchh
Q psy11648 106 NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQ-VSDR 183 (584)
Q Consensus 106 ~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~-~~~~ 183 (584)
|++++..+..|+ ++++|++|++++|.++++++..|.. +++|++|+++ +.+.... +..+
T Consensus 110 N~l~~l~~~~f~-------------------~L~~L~~L~Ls~N~l~~l~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~ 169 (635)
T 4g8a_A 110 NPIQSLALGAFS-------------------GLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYF 169 (635)
T ss_dssp CCCCEECGGGGT-------------------TCTTCCEEECTTSCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGG
T ss_pred CcCCCCCHHHhc-------------------CCCCCCEEECCCCcCCCCChhhhhc-CcccCeeccccCccccCCCchhh
Confidence 999876655444 4456666666666666655444332 2345555555 3333322 2333
Q ss_pred HhhccCCcEEEcCCCcccccchhhhcCCCC----CCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648 184 EKLLSNLETLLLRCNKITDLNGNLFRHLYN----LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI 259 (584)
Q Consensus 184 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 259 (584)
. .+++|++|++++|.++...+..+..+.+ ...++++.+.+... .+..+ ....++.+++.++... ..+....
T Consensus 170 ~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i--~~~~~-~~~~~~~l~l~~n~~~-~~~~~~~ 244 (635)
T 4g8a_A 170 S-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAF-KEIRLHKLTLRNNFDS-LNVMKTC 244 (635)
T ss_dssp G-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE--CTTTT-TTCEEEEEEEESCCSS-HHHHHHH
T ss_pred c-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc--Ccccc-cchhhhhhhhhccccc-ccccchh
Confidence 3 6788888888888877766666654433 33677777777655 33333 2334566666666433 2233333
Q ss_pred hhhcCCCCCEEEccCcccc------cccc---------------------------ccccCCCCCcEEEcccCCCccccc
Q psy11648 260 LNKNLNTLEWLAMDNNNIK------NIRN---------------------------YSLYNLTSLNYINLEYNKISKIHN 306 (584)
Q Consensus 260 ~~~~~~~L~~L~l~~~~l~------~~~~---------------------------~~l~~l~~L~~L~l~~~~l~~i~~ 306 (584)
+ ..+..++...+..+... .... ..+....+++.+++.++.+..+..
T Consensus 245 ~-~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 323 (635)
T 4g8a_A 245 I-QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD 323 (635)
T ss_dssp H-HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG
T ss_pred h-cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc
Confidence 3 45555554444321111 1111 122233445555555554443332
Q ss_pred ccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCcc--CCccCC
Q psy11648 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI--YPNAFV 384 (584)
Q Consensus 307 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~ 384 (584)
.. . ...++.+++.+|.+...... .++.++.+.+..+...... ....+++|+.++++.|.+... .+..+.
T Consensus 324 ~~--~--~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 324 FS--Y--NFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp GG--S--CCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred cc--c--chhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchh
Confidence 11 1 45566666666665544322 3455666666666554432 233567777787777776532 233445
Q ss_pred CCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhC
Q psy11648 385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD 464 (584)
Q Consensus 385 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 464 (584)
.+.+|+.+++..+....... .......++.+++..++.........+..+++++.++++.|.+..++...+..+ +
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-~ 469 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-S 469 (635)
T ss_dssp SCSCCCEEECCSCSEEEECS----CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-T
T ss_pred hhhhhhhhhccccccccccc----cccccccccchhhhhccccccccccccccccccccccccccccccccccccccc-h
Confidence 66777788777776544322 122456788888888887777666666778899999999998887776777777 8
Q ss_pred CCcEEEccCCcc-cccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEc
Q psy11648 465 SLRKLYLDFNEI-KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI 543 (584)
Q Consensus 465 ~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L 543 (584)
+++.|++++|.+ ....+..|..+++|++|++++|.+++..|..|.++++|++|++++|+++++++..|..+++|++|++
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 999999999964 4556778899999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCcCCccCc-cccCC-CCcceEECCCCCCC
Q psy11648 544 SHNRLRSLPR-DVFSN-TIIEKLDISYNQDK 572 (584)
Q Consensus 544 ~~n~l~~lp~-~l~~~-~~L~~l~l~~n~l~ 572 (584)
++|+|++++. .+..+ ++|+.|++++|+++
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999997654 45555 68999999999987
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-42 Score=367.15 Aligned_cols=383 Identities=19% Similarity=0.245 Sum_probs=292.2
Q ss_pred ccCceeccchhhcCCccceeecccccccccccc-ccchhhHHHHHhhcCCCCCCcccchhH-hhccCCcEEEcCCCcccc
Q psy11648 125 HLGTTILKDREKLLSNLETLLLRCNKITDLNGN-LFRHLQKSIVKAKKNNNNNEDQVSDRE-KLLSNLETLLLRCNKITD 202 (584)
Q Consensus 125 ~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 202 (584)
+|.++++|..+.++++|++|++++|.+++.... .+.... ... .....|..+. ..+++|++|++++|.+.+
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~--~~~------~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN--SEY------AQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT--SHH------HHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccc--cch------hcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 456667888899999999999999998883110 000000 000 0000122221 168999999999999998
Q ss_pred cchhhhcCCCCCCEEEcCCCc-cce-eecCCcccccc------ccceEEeecccccCCCCchh--hHhhhcCCCCCEEEc
Q psy11648 203 LNGNLFRHLYNLQELSLSFNK-LQI-IELNSNVFDVF------EKLQLLEISFSLFNSNEFPY--YILNKNLNTLEWLAM 272 (584)
Q Consensus 203 ~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~~l------~~L~~L~l~~~~~~~~~l~~--~~~~~~~~~L~~L~l 272 (584)
..|..+.++++|++|++++|+ +.+ . .|..+..+ ++|++|++++|.+. .+|. .+ ..+++|++|++
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l--~~l~~L~~L~L 337 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSL--QKMKKLGMLEC 337 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHH--TTCTTCCEEEC
T ss_pred cChHHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhh--ccCCCCCEEeC
Confidence 888899999999999999998 775 3 46667665 99999999999996 7887 55 79999999999
Q ss_pred cCccccccccccccCCCCCcEEEcccCCCcccccccccccccCC-ccEEEcCCCcccccccccccCCC--CCcEEEccCC
Q psy11648 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR-LKEIRLSNNYLELIESDTFYNLK--ELNTITLSYN 349 (584)
Q Consensus 273 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~ 349 (584)
++|.+++..+ .+..+++|++|++++|.++.+|..+.. +++ |++|++++|.++.+ +..+.... +|+.|++++|
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~---l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCG---FTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEE---ECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSS
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhh---hcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCC
Confidence 9999995555 889999999999999999988877544 788 99999999999954 55565544 8999999999
Q ss_pred cCCCcChhhhc-------cCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECC
Q psy11648 350 LLKSIKTTSFK-------NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422 (584)
Q Consensus 350 ~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~ 422 (584)
.+.+..+..+. .+++|+.|++++|.++.+.+..+..+++|++|++++|.++.++...+.....
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~---------- 482 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE---------- 482 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE----------
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc----------
Confidence 99988877777 7789999999999999876556667999999999999998666544432200
Q ss_pred CCccccccccccccccCcccEEEccCCCCCCCChhhH-HHhhCCCcEEEccCCcccccCccccCCCcccCeeec------
Q psy11648 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL-QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL------ 495 (584)
Q Consensus 423 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l------ 495 (584)
....+++|+.|++++|.++.+|...+ ..+ ++|++|++++|++.++ +..+..+++|++|++
T Consensus 483 -----------~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l-~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 483 -----------NFKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp -----------ECTTGGGCCEEECCSSCCCBCCGGGSTTTC-TTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCT
T ss_pred -----------cccccCCccEEECcCCcCCccChhhhhccC-CCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCccc
Confidence 00123477778888777777775444 355 7788888888887773 445667788888888
Q ss_pred cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552 (584)
Q Consensus 496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp 552 (584)
++|.+.+.+|..+..+++|++|++++|+++.++.. +. ++|++|++++|++..++
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-IT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--TTCCEEECCSCTTCEEE
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-Hh--CcCCEEECcCCCCcccc
Confidence 45777788888888899999999999999666544 43 78999999999887543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-41 Score=349.09 Aligned_cols=441 Identities=18% Similarity=0.175 Sum_probs=293.5
Q ss_pred EEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccc
Q psy11648 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITD 153 (584)
Q Consensus 74 ~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~ 153 (584)
++|+++|+++.+|..++ .+|+ +|++++|.+++..+. .+.++++|++|++++|.+++
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~--~L~Ls~n~i~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~ 59 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTT--ILNISQNYISELWTS-------------------DILSLSKLRILIISHNRIQY 59 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCS--EEECCSSCCCCCCHH-------------------HHTTCTTCCEEECCSSCCCE
T ss_pred eEecCCCCccccccccc---cccc--EEECCCCcccccChh-------------------hccccccccEEecCCCccCC
Confidence 45666666666665554 3355 666666655543332 23334556666666665555
Q ss_pred ccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCcc
Q psy11648 154 LNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233 (584)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 233 (584)
+.+. .|. .+++|++|++++|.++.++.. .+++|++|++++|.+.+.. .|..
T Consensus 60 ~~~~------------------------~~~-~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~-~p~~ 110 (520)
T 2z7x_B 60 LDIS------------------------VFK-FNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALP-ICKE 110 (520)
T ss_dssp EEGG------------------------GGT-TCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCC-CCGG
T ss_pred cChH------------------------Hhh-cccCCCEEecCCCceeecCcc---ccCCccEEeccCCcccccc-chhh
Confidence 4222 222 455666666666665544332 4566666666666554421 2455
Q ss_pred ccccccceEEeecccccCCCCchhhHhhhcCCCC--CEEEccCccc--cccccccccCCC-CCcEEEcccCCCc-ccccc
Q psy11648 234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL--EWLAMDNNNI--KNIRNYSLYNLT-SLNYINLEYNKIS-KIHNN 307 (584)
Q Consensus 234 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L--~~L~l~~~~l--~~~~~~~l~~l~-~L~~L~l~~~~l~-~i~~~ 307 (584)
+..+++|++|++++|.+. + .. + ..+++| ++|++++|.+ .+..+..+..+. ....+++++|.+. .++..
T Consensus 111 ~~~l~~L~~L~L~~n~l~-~---~~-~-~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~ 184 (520)
T 2z7x_B 111 FGNMSQLKFLGLSTTHLE-K---SS-V-LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184 (520)
T ss_dssp GGGCTTCCEEEEEESSCC-G---GG-G-GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC
T ss_pred hccCCcceEEEecCcccc-h---hh-c-cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhh
Confidence 666666666666666554 1 11 1 344555 6666666665 444333444333 1223455555544 23333
Q ss_pred cccccccCCccEEEcCCCc-------ccccccccccCCCCCcEEEccCCcCCCcChhhh---ccCcCCCEEeccCCCCCc
Q psy11648 308 LFHFNIHKRLKEIRLSNNY-------LELIESDTFYNLKELNTITLSYNLLKSIKTTSF---KNLNNMLNIVLSFNQIKY 377 (584)
Q Consensus 308 ~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 377 (584)
.+.. +++|+.+++++|. +.+..+ .+..+++|+.+++++|.+.+.....+ ...++|+.|++++|.+.+
T Consensus 185 ~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 185 SVKT--VANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261 (520)
T ss_dssp CCTT--CSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred hhhc--ccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence 3333 6666666666664 444333 46677788888888777654322111 124588888888888886
Q ss_pred cCCccC-----CCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCC
Q psy11648 378 IYPNAF-----VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452 (584)
Q Consensus 378 ~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 452 (584)
..|..+ ..++.|+.+++++|.+ ..+...+........++.+++++|.+..... ...+++|++|++++|.++
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCC
T ss_pred ccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccC
Confidence 667766 7888999999998888 5553444333233578999999988765542 135789999999999998
Q ss_pred CCChhhHHHhhCCCcEEEccCCcccccC--ccccCCCcccCeeeccCcccccccc-cccCCCCCccEEECCCCCCCCcCc
Q psy11648 453 EVPVNFLQTFADSLRKLYLDFNEIKHLD--ATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQIIDLSFNEISMLTG 529 (584)
Q Consensus 453 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~ 529 (584)
...+..+..+ ++|++|++++|++.+++ +..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|++++..+
T Consensus 338 ~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 338 DTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp TTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred hhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 7544667777 99999999999998743 4668899999999999999998444 458899999999999999987766
Q ss_pred ccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648 530 EQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP 583 (584)
Q Consensus 530 ~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~ 583 (584)
..+. ++|++|++++|+++.+|..++.+++|++|++++|+++.+|...|..+|
T Consensus 417 ~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 417 RCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468 (520)
T ss_dssp GSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCC
Confidence 6553 799999999999999999999999999999999999999998776554
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-40 Score=350.57 Aligned_cols=451 Identities=15% Similarity=0.139 Sum_probs=301.8
Q ss_pred hhccccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeee
Q psy11648 25 LQHLGTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101 (584)
Q Consensus 25 l~~Lr~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L 101 (584)
+...+++++++++++.+|. +++++|++++|.+.++.+..|.++ ++|+ +|++++|++..++.+.|....+|+ +|
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~--~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFL-SELR-VLRLSHNRIRSLDFHVFLFNQDLE--YL 105 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTC-TTCC-EEECCSCCCCEECTTTTTTCTTCC--EE
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccC-CCcc-EEECCCCCCCcCCHHHhCCCCCCC--EE
Confidence 3344677888888888877 788888888888888877788887 7888 888888888887777777666688 88
Q ss_pred ecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccc
Q psy11648 102 DLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181 (584)
Q Consensus 102 ~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 181 (584)
|+++|.++.. |.. .+++|++|++++|.+++++. +.
T Consensus 106 ~Ls~N~l~~l--------------------p~~--~l~~L~~L~Ls~N~l~~l~~-----------------------p~ 140 (562)
T 3a79_B 106 DVSHNRLQNI--------------------SCC--PMASLRHLDLSFNDFDVLPV-----------------------CK 140 (562)
T ss_dssp ECTTSCCCEE--------------------CSC--CCTTCSEEECCSSCCSBCCC-----------------------CG
T ss_pred ECCCCcCCcc--------------------Ccc--ccccCCEEECCCCCccccCc-----------------------hH
Confidence 8888877643 222 46778888888887776532 22
Q ss_pred hhHhhccCCcEEEcCCCcccccchhhhcCCCCC--CEEEcCCCcc--ceeecCCccccccc-cceEEeecccccCCCCch
Q psy11648 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNL--QELSLSFNKL--QIIELNSNVFDVFE-KLQLLEISFSLFNSNEFP 256 (584)
Q Consensus 182 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~l--~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~l~ 256 (584)
.+. .+++|++|++++|.+... .+..+++| ++|++++|.+ .+. .+..+..+. ..-.+++++|.+. +.++
T Consensus 141 ~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~--~~~~l~~l~~~~l~l~l~~n~~~-~~~~ 213 (562)
T 3a79_B 141 EFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG--ETESLQIPNTTVLHLVFHPNSLF-SVQV 213 (562)
T ss_dssp GGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS--SCCEEEECCEEEEEEEECSSSCC-CCCC
T ss_pred hhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc--CcccccccCcceEEEEecCccch-hhhh
Confidence 343 678888888888877653 34444555 8888888776 444 455555543 1224466666655 3444
Q ss_pred hhHhhhcCCCCCEEEccCcc-----ccccccccccCCCCCcEEEcccCCCcc-----cccccccccccCCccEEEcCCCc
Q psy11648 257 YYILNKNLNTLEWLAMDNNN-----IKNIRNYSLYNLTSLNYINLEYNKISK-----IHNNLFHFNIHKRLKEIRLSNNY 326 (584)
Q Consensus 257 ~~~~~~~~~~L~~L~l~~~~-----l~~~~~~~l~~l~~L~~L~l~~~~l~~-----i~~~~~~~~~~~~L~~L~l~~~~ 326 (584)
...+ ..+++|+.+++++|. +.+... .+..++.|+.++++++.+.. ++... . .++|++|++++|.
T Consensus 214 ~~~~-~~l~~L~~L~l~~n~~~~~~l~~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~---~~~L~~L~l~~n~ 287 (562)
T 3a79_B 214 NMSV-NALGHLQLSNIKLNDENCQRLMTFLS-ELTRGPTLLNVTLQHIETTWKCSVKLFQFF-W---PRPVEYLNIYNLT 287 (562)
T ss_dssp EEEE-SSEEEEEEEEEECCSTTHHHHHHHHH-HHHSCSSCEEEEEEEEEECHHHHHHHHHHH-T---TSSEEEEEEEEEE
T ss_pred hhcc-cccceEEEecccccccccchHHHHHH-HHhccCcceEEEecCCcCcHHHHHHHHHhh-h---cccccEEEEeccE
Confidence 4443 567778888877764 222222 45667777777777665441 22111 1 3477777777777
Q ss_pred ccccccccc-----cCCCCCcEEEccCCcCCCcChhhhc---cCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCC
Q psy11648 327 LELIESDTF-----YNLKELNTITLSYNLLKSIKTTSFK---NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK 398 (584)
Q Consensus 327 ~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 398 (584)
+++..+..+ ..++.|+.+++..+.+ ......+. ...+++.|++++|.+.... ....+++|++|++++|.
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred eeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCc
Confidence 765444443 4444455555555444 22112221 1245777777777665431 12456677777777776
Q ss_pred CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh--hhHHHhhCCCcEEEccCCcc
Q psy11648 399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV--NFLQTFADSLRKLYLDFNEI 476 (584)
Q Consensus 399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~n~l 476 (584)
+++..+..+ ..+++|++|++++|.++.++. ..+..+ ++|++|++++|++
T Consensus 365 l~~~~~~~~----------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l 415 (562)
T 3a79_B 365 FTDSVFQGC----------------------------STLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSL 415 (562)
T ss_dssp CCTTTTTTC----------------------------CSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCC
T ss_pred cccchhhhh----------------------------cccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcC
Confidence 665433222 225778888888888877653 345666 8888899988888
Q ss_pred cc-cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-
Q psy11648 477 KH-LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD- 554 (584)
Q Consensus 477 ~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~- 554 (584)
.+ ++...+..+++|++|++++|.+++..+..+. ++|++|++++|+++.+++..+ .+++|++|++++|+++.+|..
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~ 492 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGV 492 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTS
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHH
Confidence 87 6666688888999999999988876654443 689999999999887766555 888999999999999998887
Q ss_pred ccCCCCcceEECCCCCCC
Q psy11648 555 VFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 555 l~~~~~L~~l~l~~n~l~ 572 (584)
+..+++|+.|++++|+++
T Consensus 493 ~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTTCTTCCCEECCSCCBC
T ss_pred HhcCCCCCEEEecCCCcC
Confidence 677789999999999887
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-40 Score=358.16 Aligned_cols=367 Identities=19% Similarity=0.214 Sum_probs=294.7
Q ss_pred CcccccchhhhcCCCCCCEEEcCCCccceee---------------cCCcccc--ccccceEEeecccccCCCCchhhHh
Q psy11648 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIE---------------LNSNVFD--VFEKLQLLEISFSLFNSNEFPYYIL 260 (584)
Q Consensus 198 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---------------~~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~ 260 (584)
|.+++ +|..+.++++|++|++++|.+.+.. .+|..+. .+++|+.|++++|.+. +.+|..+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l- 511 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFL- 511 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCCGGG-
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccChHHH-
Confidence 56666 5667999999999999999887700 0466666 8999999999999877 7888776
Q ss_pred hhcCCCCCEEEccCcc-ccc-cccccc-------cCCCCCcEEEcccCCCccccc--ccccccccCCccEEEcCCCcccc
Q psy11648 261 NKNLNTLEWLAMDNNN-IKN-IRNYSL-------YNLTSLNYINLEYNKISKIHN--NLFHFNIHKRLKEIRLSNNYLEL 329 (584)
Q Consensus 261 ~~~~~~L~~L~l~~~~-l~~-~~~~~l-------~~l~~L~~L~l~~~~l~~i~~--~~~~~~~~~~L~~L~l~~~~~~~ 329 (584)
..+++|++|++++|. +++ ..|..+ ..+++|++|++++|.++.+|. .+.. +++|+.|++++|.++.
T Consensus 512 -~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~---L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 512 -YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK---MVKLGLLDCVHNKVRH 587 (876)
T ss_dssp -GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT---CTTCCEEECTTSCCCB
T ss_pred -hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc---CCCCCEEECCCCCccc
Confidence 799999999999998 776 333333 345599999999999998876 4333 8999999999999984
Q ss_pred cccccccCCCCCcEEEccCCcCCCcChhhhccCcC-CCEEeccCCCCCccCCccCCCCC--CCcEEecCCCCCCCCChhh
Q psy11648 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN-MLNIVLSFNQIKYIYPNAFVNLP--NLVKLDLQDNKLKDFNLNV 406 (584)
Q Consensus 330 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~ 406 (584)
+ + .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+..+ |..+...+ +|+.|++++|.+.+..+..
T Consensus 588 l-p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 588 L-E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp C-C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred c-h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccc
Confidence 4 4 7888999999999999988 45667888888 99999999998854 66666554 4999999999988754432
Q ss_pred hcccc--cCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhh------CCCcEEEccCCcccc
Q psy11648 407 FSNIT--SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA------DSLRKLYLDFNEIKH 478 (584)
Q Consensus 407 ~~~~~--~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~------~~L~~L~l~~n~l~~ 478 (584)
..... ....|+.|++++|.++.++... +..+++|+.|++++|.++.+|...+.... ++|++|++++|++..
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~-~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHH-HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred hhhhccccCCCcCEEEccCCcCCccCHHH-HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 22211 3447899999999999665433 23478999999999999988876665430 389999999999986
Q ss_pred cCccccC--CCcccCeeeccCcccccccccccCCCCCccEEECCC------CCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 479 LDATAFG--NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF------NEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 479 ~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~------n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
++. .+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |++.+..|..+..+++|++|+|++|+++.
T Consensus 743 lp~-~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~ 820 (876)
T 4ecn_A 743 LSD-DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820 (876)
T ss_dssp CCG-GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred chH-HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence 654 444 89999999999999998 677888999999999976 77888888899999999999999999999
Q ss_pred cCccccCCCCcceEECCCCCCCCCCCCCCC
Q psy11648 551 LPRDVFSNTIIEKLDISYNQDKIRPGRESN 580 (584)
Q Consensus 551 lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~ 580 (584)
+|..+. ++|+.|+|++|++..++...|.
T Consensus 821 Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 821 VDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp CCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred cCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 998866 6999999999999987765553
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.6e-39 Score=346.48 Aligned_cols=499 Identities=20% Similarity=0.223 Sum_probs=337.9
Q ss_pred ccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceee
Q psy11648 27 HLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT 100 (584)
Q Consensus 27 ~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~ 100 (584)
.+|+||+++|+|+.+|. ++|++|++++|+++++.+++|.++ ++|+ +|+|++|+++.+|.++|....+|+ +
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~-~L~Ls~N~l~~l~~~~f~~L~~L~--~ 128 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLS-TLILTGNPIQSLALGAFSGLSSLQ--K 128 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCC-EEECTTCCCCEECGGGGTTCTTCC--E
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC-CCCC-EEEccCCcCCCCCHHHhcCCCCCC--E
Confidence 34455555555555543 555555555555555555555555 5555 555555555555555555555555 5
Q ss_pred eecCCCceeeechhhhccchhccc----ccCce--eccchhhcCCccceeeccccccccccccccchhhH---HHHHhhc
Q psy11648 101 LDLSHNKLSVLNMATLYSNVTKLQ----HLGTT--ILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQK---SIVKAKK 171 (584)
Q Consensus 101 L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~--~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~---~L~~L~l 171 (584)
|++++|.+++..+..|+.+..+.. .|.++ .+|..+..+++|++|++++|.++++.+..+..+.. ....+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 555555555554444444443322 34444 24556777888999999999888876665543221 1112333
Q ss_pred C-CCCCCcccchhHhhccCCcEEEcCCCccc-ccchhhhcCCCCCCEEEcCCCc------cceeecCCccccccccceEE
Q psy11648 172 N-NNNNEDQVSDREKLLSNLETLLLRCNKIT-DLNGNLFRHLYNLQELSLSFNK------LQIIELNSNVFDVFEKLQLL 243 (584)
Q Consensus 172 ~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~------l~~~~~~~~~~~~l~~L~~L 243 (584)
+ +....+.+..+ ....++.+++.++... ......+..+..++...+..+. +... ....+.....+...
T Consensus 209 s~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 209 SLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF--DKSALEGLCNLTIE 284 (635)
T ss_dssp TTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC--CTTTTGGGGGSEEE
T ss_pred ccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc--cccccccccchhhh
Confidence 3 44444444443 2345666777766543 2334456667777766654221 1111 23445555666666
Q ss_pred eecccccCC--CCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEE
Q psy11648 244 EISFSLFNS--NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321 (584)
Q Consensus 244 ~l~~~~~~~--~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~ 321 (584)
.+..+.... ...... + ....+++.+.+.++.+.... .+.....++.|++.++.+..++... +..|+.+.
T Consensus 285 ~l~~~~~~~~~~~~~~~-~-~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~L~~l~ 355 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDL-F-NCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLK-----LKSLKRLT 355 (635)
T ss_dssp EEEEECCCSCEEECTTT-T-GGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCB-----CTTCCEEE
T ss_pred hhhhhhhcccccchhhh-h-hhhccccccccccccccccc--ccccchhhhhhhcccccccCcCccc-----chhhhhcc
Confidence 665543320 111222 2 56678899999888877665 3566788999999999877665532 67888888
Q ss_pred cCCCcccccccccccCCCCCcEEEccCCcCCC--cChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCC
Q psy11648 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKS--IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399 (584)
Q Consensus 322 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 399 (584)
+..+...... ....++.|+.++++.|.+.. ..+..+..+.+|+.+++..+..... +..+..+++|+.+++..+..
T Consensus 356 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~ 432 (635)
T 4g8a_A 356 FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL 432 (635)
T ss_dssp EESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEE
T ss_pred cccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccc
Confidence 8888766543 34567899999999998753 3345556778999999998887765 45677889999999998875
Q ss_pred CCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCC-CCCChhhHHHhhCCCcEEEccCCcccc
Q psy11648 400 KDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI-QEVPVNFLQTFADSLRKLYLDFNEIKH 478 (584)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~~L~~L~l~~n~l~~ 478 (584)
...... ........++.++++.|.+........ ..+++++.|++++|.+ ..+.+..+..+ ++|++|++++|++.+
T Consensus 433 ~~~~~~--~~~~~l~~l~~l~ls~n~l~~~~~~~~-~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 433 KQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQ 508 (635)
T ss_dssp ESTTSS--CTTTTCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCE
T ss_pred cccccc--ccccccccccccccccccccccccccc-ccchhhhhhhhhhcccccccCchhhhhc-cccCEEECCCCccCC
Confidence 544322 122345688999999998887665443 3478999999999874 34455677777 999999999999999
Q ss_pred cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCC-CCccEEEcCCCcCC
Q psy11648 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS-FKLRILNISHNRLR 549 (584)
Q Consensus 479 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~-~~L~~L~L~~n~l~ 549 (584)
+++..|.++++|++|++++|.+++..+..|..+++|++|++++|+++++++..+..+ ++|++|++++|.++
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999999999999999999988899999999999999999999999999887 68999999998876
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-39 Score=346.96 Aligned_cols=403 Identities=17% Similarity=0.231 Sum_probs=248.8
Q ss_pred ccCceeccchhhcCCccceeecccccccccccc-ccchh-hHHHHHhhcCCCCCCcccchh-HhhccCCcEEEcCCCccc
Q psy11648 125 HLGTTILKDREKLLSNLETLLLRCNKITDLNGN-LFRHL-QKSIVKAKKNNNNNEDQVSDR-EKLLSNLETLLLRCNKIT 201 (584)
Q Consensus 125 ~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 201 (584)
.|.++++|..+.++++|++|++++|.+++.... .+... ...+ ....|..+ ...+++|+.|++++|.+.
T Consensus 434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~---------~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA---------KQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH---------HHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc---------cccCChhhhhccCCCCCEEECcCCCCC
Confidence 467778999999999999999999998872100 00000 0000 00012221 015677888888887777
Q ss_pred ccchhhhcCCCCCCEEEcCCCc-cce-eecCCccccccc-------cceEEeecccccCCCCchh--hHhhhcCCCCCEE
Q psy11648 202 DLNGNLFRHLYNLQELSLSFNK-LQI-IELNSNVFDVFE-------KLQLLEISFSLFNSNEFPY--YILNKNLNTLEWL 270 (584)
Q Consensus 202 ~~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~~l~-------~L~~L~l~~~~~~~~~l~~--~~~~~~~~~L~~L 270 (584)
+..|..+.++++|++|++++|+ +.+ . .|..+..++ +|+.|++++|.+. .+|. .+ ..+++|++|
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~--iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l--~~L~~L~~L 578 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQ--LKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASL--QKMVKLGLL 578 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHH--HHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHH--TTCTTCCEE
T ss_pred ccChHHHhCCCCCCEEECcCCCCccccc--chHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhh--hcCCCCCEE
Confidence 7667777778888888888776 654 2 344444443 7777777777764 5665 43 567777777
Q ss_pred EccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCC-ccEEEcCCCcccccccccccCCC--CCcEEEcc
Q psy11648 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR-LKEIRLSNNYLELIESDTFYNLK--ELNTITLS 347 (584)
Q Consensus 271 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~ 347 (584)
++++|.++.++ .+..+++|++|++++|.+..++..+.. +++ |+.|++++|.++.+ +..+...+ +|+.|+++
T Consensus 579 ~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~---l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 579 DCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCA---FTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp ECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCE---ECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECC
T ss_pred ECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhh---ccccCCEEECcCCCCCcC-chhhhccccCCCCEEECc
Confidence 77777776444 566777777777777776666655433 565 77777777766633 34444433 26666666
Q ss_pred CCcCCCcChhh---hc--cCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECC
Q psy11648 348 YNLLKSIKTTS---FK--NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422 (584)
Q Consensus 348 ~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~ 422 (584)
+|.+.+..+.. +. .+++|+.|++++|.+..+.+..+..+++|+.|++++|.+..++...+....
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~----------- 721 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD----------- 721 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT-----------
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc-----------
Confidence 66665543211 11 223555555555555544322333455555555555555543332221110
Q ss_pred CCccccccccccccccCcccEEEccCCCCCCCChhhH-HHhhCCCcEEEccCCcccccCccccCCCcccCeeeccC----
Q psy11648 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL-QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH---- 497 (584)
Q Consensus 423 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~---- 497 (584)
.....+++|+.|++++|.++.+|.... ..+ ++|+.|++++|++.++ +..+..+++|+.|++++
T Consensus 722 ----------~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l-~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 722 ----------GNYKNTYLLTTIDLRFNKLTSLSDDFRATTL-PYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp ----------SCCTTGGGCCEEECCSSCCCCCCGGGSTTTC-TTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCT
T ss_pred ----------ccccccCCccEEECCCCCCccchHHhhhccC-CCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCc
Confidence 001123478888888888887775443 255 7888888888888774 44566788888888865
Q ss_pred --cccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc-CCCCcceEECCCCCCCCC
Q psy11648 498 --NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-SNTIIEKLDISYNQDKIR 574 (584)
Q Consensus 498 --n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~-~~~~L~~l~l~~n~l~~~ 574 (584)
|.+.+.+|..+..+++|+.|++++|++..++.. +. ++|+.|+|++|++..+....+ ....+..+.+.+|+...+
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCCCccCHh-hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence 777788888888899999999999999655544 43 689999999998886543222 223455556666655543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-37 Score=328.84 Aligned_cols=378 Identities=19% Similarity=0.180 Sum_probs=244.7
Q ss_pred hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~ 265 (584)
.+++|++|++++|.++.++.. .+++|++|++++|.+.+.. .+..|..+++|++|++++|.+. + .. + ..++
T Consensus 98 ~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~-~-~~---~-~~l~ 167 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFR-Q-LD---L-LPVA 167 (562)
T ss_dssp TCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCC-T-TT---T-GGGT
T ss_pred CCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccc-c-Cc---h-hhhh
Confidence 345555555555555543332 4555555555555554421 1244555555555555555543 1 11 1 2233
Q ss_pred CC--CEEEccCccc--cccccccccCCC-CCcEEEcccCCCcc-cccccccccccCCccEEEcCCCc-----cccccccc
Q psy11648 266 TL--EWLAMDNNNI--KNIRNYSLYNLT-SLNYINLEYNKISK-IHNNLFHFNIHKRLKEIRLSNNY-----LELIESDT 334 (584)
Q Consensus 266 ~L--~~L~l~~~~l--~~~~~~~l~~l~-~L~~L~l~~~~l~~-i~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~ 334 (584)
+| ++|++++|.+ ++..+..+..+. ..-.+++++|.+.. ++...+.. +++|+.+++++|. +.+. ...
T Consensus 168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~l~~~-~~~ 244 (562)
T 3a79_B 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA--LGHLQLSNIKLNDENCQRLMTF-LSE 244 (562)
T ss_dssp TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESS--EEEEEEEEEECCSTTHHHHHHH-HHH
T ss_pred hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccc--cceEEEecccccccccchHHHH-HHH
Confidence 33 5566655555 444333443332 11133455554442 22222222 5666666666653 1111 123
Q ss_pred ccCCCCCcEEEccCCcCCCcChh---hhccCcCCCEEeccCCCCCccCCccC-----CCCCCCcEEecCCCCCCCCChhh
Q psy11648 335 FYNLKELNTITLSYNLLKSIKTT---SFKNLNNMLNIVLSFNQIKYIYPNAF-----VNLPNLVKLDLQDNKLKDFNLNV 406 (584)
Q Consensus 335 l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~ 406 (584)
+..++.++.+++.++.+.+.... .....++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ..+...
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~ 323 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEA 323 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHH
T ss_pred HhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhh
Confidence 55667777777776665532111 11123478888888888776556555 5566666666666665 444333
Q ss_pred hcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccC--cccc
Q psy11648 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD--ATAF 484 (584)
Q Consensus 407 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l 484 (584)
+........++.+++++|.+..... ...+++|++|++++|.++...+..+..+ ++|++|++++|++.+++ +..+
T Consensus 324 ~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 324 LYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTT
T ss_pred hhhhhccCcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhh
Confidence 3333234578899999888765442 1357899999999999987555677777 99999999999998765 3568
Q ss_pred CCCcccCeeeccCccccc-ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcce
Q psy11648 485 GNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK 563 (584)
Q Consensus 485 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~ 563 (584)
..+++|++|++++|.+.+ ..+..+..+++|++|++++|++++..+..+. ++|++|++++|+++.+|..++.+++|+.
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQE 477 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSE
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCE
Confidence 899999999999999998 4444688999999999999999876665443 7999999999999999999999999999
Q ss_pred EECCCCCCCCCCCCCCCCCC
Q psy11648 564 LDISYNQDKIRPGRESNPRP 583 (584)
Q Consensus 564 l~l~~n~l~~~p~~~~~~~~ 583 (584)
|++++|+++.+|...|...|
T Consensus 478 L~L~~N~l~~l~~~~~~~l~ 497 (562)
T 3a79_B 478 LNVASNQLKSVPDGVFDRLT 497 (562)
T ss_dssp EECCSSCCCCCCTTSTTTCT
T ss_pred EECCCCCCCCCCHHHHhcCC
Confidence 99999999999998776654
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.7e-37 Score=315.82 Aligned_cols=374 Identities=22% Similarity=0.300 Sum_probs=257.2
Q ss_pred cEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEE
Q psy11648 191 ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWL 270 (584)
Q Consensus 191 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L 270 (584)
+.++.++++++.++. + .++|++|++++|.+.+. .+..|..+++|++|++++|.+. +.++...+ ..+++|++|
T Consensus 13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~~~-~~i~~~~~-~~l~~L~~L 84 (455)
T 3v47_A 13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPG-LVIRNNTF-RGLSSLIIL 84 (455)
T ss_dssp TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCCCSTT-CEECTTTT-TTCTTCCEE
T ss_pred cccCcCCCCcccCCC--C--CCccCEEEecCCccCcC--ChhHhccCccccEEECcCCccc-ceECcccc-cccccCCEE
Confidence 344555555544433 1 14566666666666555 4555666666666666666554 34444333 566666666
Q ss_pred EccCccccccccccccCCCCCcEEEcccCCCcc--cccccccccccCCccEEEcCCCccccccccc-ccCCCCCcEEEcc
Q psy11648 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK--IHNNLFHFNIHKRLKEIRLSNNYLELIESDT-FYNLKELNTITLS 347 (584)
Q Consensus 271 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~--i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~ 347 (584)
++++|.+++..+..+..+++|++|++++|.+++ .....+.. +++|++|++++|.++...+.. +..+++|++|+++
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP--LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT--CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC--cccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 666666666555566666666666666666653 22222333 566666666666666654443 5566666666666
Q ss_pred CCcCCCcChhhhccC--cCCCEEeccCCCCCccCCcc--------CCCCCCCcEEecCCCCCCCCChhhhcccccCCCCc
Q psy11648 348 YNLLKSIKTTSFKNL--NNMLNIVLSFNQIKYIYPNA--------FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM 417 (584)
Q Consensus 348 ~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~ 417 (584)
+|.+.+..+..+..+ ..++.+++++|.+.+..+.. +..+++|++|++++|.+++..+..+........++
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence 666666555555443 45666666666666543322 22456677777777776665555544443445666
Q ss_pred eEECCCCccccccc----------cc-cccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCC
Q psy11648 418 NLNLSNNYITNLYE----------ND-KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486 (584)
Q Consensus 418 ~L~l~~~~l~~~~~----------~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 486 (584)
.+++++|....... .. .....++|++|++++|.++.+++..+..+ ++|++|++++|++.+.++..|..
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 321 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWG 321 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTT
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcC
Confidence 77776664332111 00 11124689999999999998877888888 99999999999999998889999
Q ss_pred CcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccc-cCCCCcceEE
Q psy11648 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV-FSNTIIEKLD 565 (584)
Q Consensus 487 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~~~~~L~~l~ 565 (584)
+++|++|++++|.+.+..+..|..+++|++|++++|+++++.+..|..+++|++|++++|+++.+|... ..+++|+.|+
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 999999999999999888889999999999999999999999999999999999999999999988765 5679999999
Q ss_pred CCCCCCC-CCC
Q psy11648 566 ISYNQDK-IRP 575 (584)
Q Consensus 566 l~~n~l~-~~p 575 (584)
+++|+++ ..|
T Consensus 402 l~~N~l~~~~~ 412 (455)
T 3v47_A 402 LHTNPWDCSCP 412 (455)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCcccCCC
Confidence 9999998 555
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-35 Score=304.36 Aligned_cols=374 Identities=23% Similarity=0.286 Sum_probs=285.6
Q ss_pred ceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccc-ccchh
Q psy11648 128 TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKIT-DLNGN 206 (584)
Q Consensus 128 l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 206 (584)
++.+|. +. ++|++|++++|.++++.+. .+. .+++|++|++++|.+. .+.+.
T Consensus 22 l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~------------------------~~~-~l~~L~~L~L~~n~~~~~i~~~ 73 (455)
T 3v47_A 22 LHQVPE-LP--AHVNYVDLSLNSIAELNET------------------------SFS-RLQDLQFLKVEQQTPGLVIRNN 73 (455)
T ss_dssp CSSCCC-CC--TTCCEEECCSSCCCEECTT------------------------TTS-SCTTCCEEECCCCSTTCEECTT
T ss_pred cccCCC-CC--CccCEEEecCCccCcCChh------------------------Hhc-cCccccEEECcCCcccceECcc
Confidence 334554 22 6899999999988877443 333 6789999999999886 45567
Q ss_pred hhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhh-HhhhcCCCCCEEEccCcccccccccc-
Q psy11648 207 LFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY-ILNKNLNTLEWLAMDNNNIKNIRNYS- 284 (584)
Q Consensus 207 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~- 284 (584)
.|.++++|++|++++|.+.+. .+..+..+++|++|++++|.+. +.++.. .+ ..+++|++|++++|.+++..+..
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~ 149 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQL--ETGAFNGLANLEVLTLTQCNLD-GAVLSGNFF-KPLTSLEMLVLRDNNIKKIQPASF 149 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEE--CTTTTTTCTTCCEEECTTSCCB-THHHHSSTT-TTCTTCCEEECCSSBCCSCCCCGG
T ss_pred cccccccCCEEeCCCCccCcc--ChhhccCcccCCEEeCCCCCCC-ccccCcccc-cCcccCCEEECCCCccCccCcccc
Confidence 788999999999999998877 7888899999999999999886 434433 23 78889999999999988876544
Q ss_pred ccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCccccccccc--------ccCCCCCcEEEccCCcCCCcCh
Q psy11648 285 LYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT--------FYNLKELNTITLSYNLLKSIKT 356 (584)
Q Consensus 285 l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~ 356 (584)
+..+++|++|++++|.+..+....+..-...+++.+++++|.+....+.. +..+++|++|++++|.+.+..+
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 78889999999999988877665554322367888888888887654432 2345678888888888776655
Q ss_pred hhhccC---cCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccc
Q psy11648 357 TSFKNL---NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND 433 (584)
Q Consensus 357 ~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~ 433 (584)
..+... ++++.+++++|...+... ..+.+.+.....+..+ ....++.+++++|.+....+..
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGG-TTSCCCEEECCSSCCCEECTTT
T ss_pred hhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccc-cccCceEEEecCccccccchhh
Confidence 554433 677777777765443211 1111122222222222 3356778888888777654433
Q ss_pred cccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCC
Q psy11648 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPN 513 (584)
Q Consensus 434 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 513 (584)
+..+++|++|++++|.++.+++..+..+ ++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..|..+++
T Consensus 295 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 -FSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp -TTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred -cccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 2447899999999999998877788888 99999999999999988889999999999999999999998899999999
Q ss_pred ccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 514 LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 514 L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
|++|++++|+++++++..|..+++|++|++++|+++.
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 9999999999999999888999999999999999884
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.2e-35 Score=300.31 Aligned_cols=404 Identities=23% Similarity=0.260 Sum_probs=233.5
Q ss_pred cceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccc
Q psy11648 69 ACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRC 148 (584)
Q Consensus 69 ~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~ 148 (584)
.+|+ ++++++|.++.+|.++....+ |+ +|++++|.+.+..+..++.+..+... .+. -....++++|++++
T Consensus 11 ~~L~-~L~l~~n~l~~iP~~i~~L~~-L~--~L~l~~n~~~~~~p~~~~~l~~L~~l----~l~--~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 11 TFLQ-EPLRHSSNLTEMPVEAENVKS-KT--EYYNAWSEWERNAPPGNGEQREMAVS----RLR--DCLDRQAHELELNN 80 (454)
T ss_dssp ------------------------CC-HH--HHHHHHHHHHHTSCTTSCCCHHHHHH----HHH--HHHHHTCSEEECTT
T ss_pred ccch-hhhcccCchhhCChhHhcccc-hh--hhhccCCcccccCCcccccchhcchh----hhh--hhhccCCCEEEecC
Confidence 5677 888888888888877655555 88 88888887776655555544321100 000 00113567788888
Q ss_pred cccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceee
Q psy11648 149 NKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228 (584)
Q Consensus 149 n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 228 (584)
|++++++. ..++|++|++++|.+++++. ..++|++|++++|.+.++
T Consensus 81 ~~l~~lp~-----------------------------~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l- 126 (454)
T 1jl5_A 81 LGLSSLPE-----------------------------LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKAL- 126 (454)
T ss_dssp SCCSCCCS-----------------------------CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCC-
T ss_pred CccccCCC-----------------------------CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcc-
Confidence 77776522 23678888888888877432 247888888888877654
Q ss_pred cCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCccccccc
Q psy11648 229 LNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308 (584)
Q Consensus 229 ~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~ 308 (584)
+.. .++|++|++++|.+. .+|. + ..+++|++|++++|.+++++. . .++|++|++++|.++.++.
T Consensus 127 --~~~---~~~L~~L~L~~n~l~--~lp~--~-~~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~l~~l~~-- 190 (454)
T 1jl5_A 127 --SDL---PPLLEYLGVSNNQLE--KLPE--L-QNSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQLEELPE-- 190 (454)
T ss_dssp --CSC---CTTCCEEECCSSCCS--SCCC--C-TTCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSCCSSCCC--
T ss_pred --cCC---CCCCCEEECcCCCCC--CCcc--c-CCCCCCCEEECCCCcCcccCC-C---cccccEEECcCCcCCcCcc--
Confidence 211 167888888888875 4763 3 788888888888888877543 2 3578888888888887662
Q ss_pred ccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCC
Q psy11648 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388 (584)
Q Consensus 309 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 388 (584)
+.. +++|+.|++++|.+++... ..++|++|++++|.+..+ + .+..+++|+.|++++|.++++ |. ..++
T Consensus 191 ~~~--l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~ 258 (454)
T 1jl5_A 191 LQN--LPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTL-PD---LPPS 258 (454)
T ss_dssp CTT--CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSC-CS---CCTT
T ss_pred ccC--CCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCcc-cc---cccc
Confidence 333 7888888888888776432 125788888888887754 3 367788888888888887765 32 2477
Q ss_pred CcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcE
Q psy11648 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRK 468 (584)
Q Consensus 389 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 468 (584)
|++|++++|.+++++. ....++.+++++|.+++++.. .++|++|++++|.++.++ .++++|++
T Consensus 259 L~~L~l~~N~l~~l~~-------~~~~L~~L~ls~N~l~~l~~~-----~~~L~~L~l~~N~l~~i~-----~~~~~L~~ 321 (454)
T 1jl5_A 259 LEALNVRDNYLTDLPE-------LPQSLTFLDVSENIFSGLSEL-----PPNLYYLNASSNEIRSLC-----DLPPSLEE 321 (454)
T ss_dssp CCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSEESCC-----CTTCCEEECCSSCCSEEC-----CCCTTCCE
T ss_pred cCEEECCCCcccccCc-------ccCcCCEEECcCCccCcccCc-----CCcCCEEECcCCcCCccc-----CCcCcCCE
Confidence 8888888888776432 124678888888887765421 367888888888777654 12257888
Q ss_pred EEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCC--cCcccccCC-----------
Q psy11648 469 LYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM--LTGEQFYFS----------- 535 (584)
Q Consensus 469 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~~~~~~----------- 535 (584)
|++++|++.+++. .+++|++|++++|.++. +|. .+++|++|++++|++++ ..|..+..+
T Consensus 322 L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~ 393 (454)
T 1jl5_A 322 LNVSNNKLIELPA----LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393 (454)
T ss_dssp EECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred EECCCCccccccc----cCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence 8888888776543 24778888888887774 333 46788888888888877 344555444
Q ss_pred --CCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648 536 --FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 536 --~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~ 572 (584)
++|++|++++|+++++|.- -++++.+.+.+|.+.
T Consensus 394 ~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV 429 (454)
T ss_dssp ---------------------------------------
T ss_pred ccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence 6677777777776643311 035666666666654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-34 Score=298.14 Aligned_cols=351 Identities=27% Similarity=0.331 Sum_probs=264.9
Q ss_pred hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~ 265 (584)
.+++++.|+++++.+..+. .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. .++. + ..++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~---~~-~~~l~~L~~L~l~~n~l~--~~~~--~-~~l~ 112 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDI---TP-LKNLTKLVDILMNNNQIA--DITP--L-ANLT 112 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCC--CCGG--G-TTCT
T ss_pred HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCc---hh-hhccccCCEEECCCCccc--cChh--h-cCCC
Confidence 4678888888888877654 377788888888888877665 22 778888888888888775 4444 3 6888
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 345 (584)
+|++|++++|.+++.++ +..+++|++|++++|.+..++. +.. +++|+.|++. +.+.... .+..+++|+.|+
T Consensus 113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~--l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~ 183 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSG--LTSLQQLSFG-NQVTDLK--PLANLTTLERLD 183 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTT--CTTCSEEEEE-ESCCCCG--GGTTCTTCCEEE
T ss_pred CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh--hcc--CCcccEeecC-CcccCch--hhccCCCCCEEE
Confidence 88888888888887754 7788888888888888776653 233 7888888885 3444332 367788888888
Q ss_pred ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425 (584)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~ 425 (584)
+++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.+ .+..++.++.|++++|.
T Consensus 184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQ 254 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSC
T ss_pred CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-----hhhcCCCCCEEECCCCc
Confidence 888887765 246778888888888888877643 667788888888888877642 23345678888888888
Q ss_pred cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505 (584)
Q Consensus 426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 505 (584)
+..... ...+++|+.|++++|.++.++. +..+ ++|++|++++|++.+.++ +..+++|++|++++|.+.+..+
T Consensus 255 l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 255 ISNLAP---LSGLTKLTELKLGANQISNISP--LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred cccchh---hhcCCCCCEEECCCCccCcccc--ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 877654 4457888888888888887764 6666 888888888888877654 6778888888888888887655
Q ss_pred cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCC
Q psy11648 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRE 578 (584)
Q Consensus 506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~ 578 (584)
+..+++|++|++++|+++++ ..+..+++|++|++++|+++.++. +..+++|+.|++++|+++.+|...
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhh
Confidence 67888888888888888876 347788888888888888887665 777788888888888888766554
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-35 Score=301.78 Aligned_cols=401 Identities=22% Similarity=0.283 Sum_probs=209.0
Q ss_pred hhhccccccccccccccccc-----ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccce
Q psy11648 24 KLQHLGTTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98 (584)
Q Consensus 24 ~l~~Lr~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~ 98 (584)
+.++||+|++++|.+..+|. ++|++|++++|.+.+..+..+.++ .+|+ .+++++|.. ..++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l-~~L~-~l~l~~c~~-----------~~l~- 74 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMA-VSRLRDCLD-----------RQAH- 74 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCC-HHHH-HHHHHHHHH-----------HTCS-
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccc-hhcc-hhhhhhhhc-----------cCCC-
Confidence 45677777888887777775 777777777777777777777666 5554 444333321 1244
Q ss_pred eeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCc
Q psy11648 99 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED 178 (584)
Q Consensus 99 ~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~ 178 (584)
+|++++|.+++.. .. .++|++|++++|.+++++.
T Consensus 75 -~L~l~~~~l~~lp--------------------~~---~~~L~~L~l~~n~l~~lp~---------------------- 108 (454)
T 1jl5_A 75 -ELELNNLGLSSLP--------------------EL---PPHLESLVASCNSLTELPE---------------------- 108 (454)
T ss_dssp -EEECTTSCCSCCC--------------------SC---CTTCSEEECCSSCCSSCCC----------------------
T ss_pred -EEEecCCccccCC--------------------CC---cCCCCEEEccCCcCCcccc----------------------
Confidence 5555555443311 10 1345555555554444311
Q ss_pred ccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhh
Q psy11648 179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY 258 (584)
Q Consensus 179 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~ 258 (584)
..++|+.|++++|.++++.. + .++|++|++++|.+.++ + .+..+++|++|++++|.+. .+|.
T Consensus 109 -------~~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~L~~n~l~~l---p-~~~~l~~L~~L~l~~N~l~--~lp~- 170 (454)
T 1jl5_A 109 -------LPQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLEKL---P-ELQNSSFLKIIDVDNNSLK--KLPD- 170 (454)
T ss_dssp -------CCTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCSSC---C-CCTTCTTCCEEECCSSCCS--CCCC-
T ss_pred -------ccCCCcEEECCCCccCcccC--C--CCCCCEEECcCCCCCCC---c-ccCCCCCCCEEECCCCcCc--ccCC-
Confidence 12445555555554443221 0 13455555555554432 2 3455555555555555543 2332
Q ss_pred HhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCC
Q psy11648 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL 338 (584)
Q Consensus 259 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 338 (584)
..++|++|++++|.+++++ .+..+++|++|++++|.+++++.. .++|+.|++++|.++.+. .+..+
T Consensus 171 ----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~n~l~~lp--~~~~l 236 (454)
T 1jl5_A 171 ----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEELP--ELQNL 236 (454)
T ss_dssp ----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC------CTTCCEEECCSSCCSSCC--CCTTC
T ss_pred ----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC------cCcccEEECcCCcCCccc--ccCCC
Confidence 2235666666666666543 366666666666666666655442 346666666666666432 25666
Q ss_pred CCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCce
Q psy11648 339 KELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN 418 (584)
Q Consensus 339 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~ 418 (584)
++|++|++++|.+.++.. ..++|+.|++++|.+.++ |.. .++|++|++++|.+++.+. . .+.++.
T Consensus 237 ~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l~~-----~--~~~L~~ 301 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSE-----L--PPNLYY 301 (454)
T ss_dssp TTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESC-----C--CTTCCE
T ss_pred CCCCEEECCCCcCCcccc----cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcccC-----c--CCcCCE
Confidence 777777777776665421 236777777777777664 322 3677788888777765321 1 146778
Q ss_pred EECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCc
Q psy11648 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498 (584)
Q Consensus 419 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 498 (584)
+++++|.++.++. ..++|++|++++|.++.+|.. + ++|++|++++|++..++. .+++|++|++++|
T Consensus 302 L~l~~N~l~~i~~-----~~~~L~~L~Ls~N~l~~lp~~----~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N 367 (454)
T 1jl5_A 302 LNASSNEIRSLCD-----LPPSLEELNVSNNKLIELPAL----P-PRLERLIASFNHLAEVPE----LPQNLKQLHVEYN 367 (454)
T ss_dssp EECCSSCCSEECC-----CCTTCCEEECCSSCCSCCCCC----C-TTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred EECcCCcCCcccC-----CcCcCCEEECCCCcccccccc----C-CcCCEEECCCCccccccc----hhhhccEEECCCC
Confidence 8888887776442 135899999999999888743 3 899999999999987655 4689999999999
Q ss_pred cccc--ccccccCCC-------------CCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 499 NIAV--VVKRTFIGM-------------PNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 499 ~~~~--~~~~~~~~~-------------~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
.+.+ .+|..+..+ ++|+.|++++|++++++. + .+.++.|.+.+|.+.
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~--i--P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD--I--PESVEDLRMNSERVV 429 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC-----------------------------------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc--c--hhhHhheeCcCcccC
Confidence 9998 677777776 899999999999987421 1 246788889988776
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-33 Score=287.39 Aligned_cols=352 Identities=23% Similarity=0.354 Sum_probs=280.8
Q ss_pred cCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCE
Q psy11648 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQE 216 (584)
Q Consensus 137 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 216 (584)
.+++++.|+++++.+..++. +. .+++|++|++++|.++...+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--------------------------~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~ 94 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--------------------------VE-YLNNLTQINFSNNQLTDITP--LKNLTKLVD 94 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--------------------------GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccCcc--------------------------hh-hhcCCCEEECCCCccCCchh--hhccccCCE
Confidence 35689999999988776521 22 67889999999988887765 888889999
Q ss_pred EEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEc
Q psy11648 217 LSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL 296 (584)
Q Consensus 217 L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 296 (584)
|++++|.+.+. +. +..+++|++|++++|.+. .++. + ..+++|++|++++|.+...+ .+..+++|++|++
T Consensus 95 L~l~~n~l~~~---~~-~~~l~~L~~L~L~~n~l~--~~~~--~-~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l 163 (466)
T 1o6v_A 95 ILMNNNQIADI---TP-LANLTNLTGLTLFNNQIT--DIDP--L-KNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF 163 (466)
T ss_dssp EECCSSCCCCC---GG-GTTCTTCCEEECCSSCCC--CCGG--G-TTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEE
T ss_pred EECCCCccccC---hh-hcCCCCCCEEECCCCCCC--CChH--H-cCCCCCCEEECCCCccCCCh--hhccCCcccEeec
Confidence 99998888765 22 888889999999988875 4554 3 78889999999998888765 4788889999988
Q ss_pred ccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCC
Q psy11648 297 EYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376 (584)
Q Consensus 297 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 376 (584)
++ .+..++. +.. +++|+.|++++|.++... .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 164 ~~-~~~~~~~--~~~--l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 164 GN-QVTDLKP--LAN--LTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EE-SCCCCGG--GTT--CTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CC-cccCchh--hcc--CCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 63 4444433 333 788999999998887753 36788889999999998887654 667888999999998888
Q ss_pred ccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh
Q psy11648 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV 456 (584)
Q Consensus 377 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 456 (584)
+. ..+..+++|++|++++|.+.+..+ ...++.|+.|++++|.++..+. ...+++|+.|++++|.++.++.
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh-----hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh
Confidence 75 457788899999999998877543 3356788999999998887665 4457899999999999888764
Q ss_pred hhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCC
Q psy11648 457 NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536 (584)
Q Consensus 457 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~ 536 (584)
+..+ ++|++|++++|++.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..| +..++
T Consensus 305 --~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 375 (466)
T 1o6v_A 305 --ISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT 375 (466)
T ss_dssp --GGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred --hcCC-CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC
Confidence 6666 899999999999887765 67889999999999998876 468899999999999999998877 77899
Q ss_pred CccEEEcCCCcCCccCcccc
Q psy11648 537 KLRILNISHNRLRSLPRDVF 556 (584)
Q Consensus 537 ~L~~L~L~~n~l~~lp~~l~ 556 (584)
+|++|++++|+++.+|....
T Consensus 376 ~L~~L~l~~n~~~~~p~~~~ 395 (466)
T 1o6v_A 376 RITQLGLNDQAWTNAPVNYK 395 (466)
T ss_dssp TCCEEECCCEEEECCCBCCC
T ss_pred CCCEEeccCCcccCCchhhc
Confidence 99999999999888776543
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=291.52 Aligned_cols=322 Identities=23% Similarity=0.285 Sum_probs=261.8
Q ss_pred CcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCE
Q psy11648 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEW 269 (584)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~ 269 (584)
-+.++.++..++.++.. + .+++++|++++|.+.+. .+..|..+++|++|++++|.+. .++...+ ..+++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~-~~l~~L~~ 84 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTL--NQDEFASFPHLEELELNENIVS--AVEPGAF-NNLFNLRT 84 (477)
T ss_dssp TTEEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSCCC--EECTTTT-TTCTTCCE
T ss_pred CCEEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceE--CHhHccCCCCCCEEECCCCccC--EeChhhh-hCCccCCE
Confidence 35677777777665442 2 25788888888888777 6677888888888888888775 4433333 78888888
Q ss_pred EEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCC
Q psy11648 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349 (584)
Q Consensus 270 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 349 (584)
|++++|.++.++...+..+++|++|++++|.+..++...+.. +++|++|++++|.++...+..+..+++|++|++++|
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD--LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccc--cccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 888888888887777888888888888888888776666655 888888888888888877777888889999999999
Q ss_pred cCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccc
Q psy11648 350 LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429 (584)
Q Consensus 350 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~ 429 (584)
.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+..
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------------------- 219 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN----------------------- 219 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-----------------------
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-----------------------
Confidence 888887777888899999999999888887778888889999998887643321110
Q ss_pred cccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccC
Q psy11648 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFI 509 (584)
Q Consensus 430 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 509 (584)
. ....+|+.|++++|.++.++...+..+ ++|++|++++|.+.+.++..|..+++|++|++++|.+.+..+..|.
T Consensus 220 ---~--~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 220 ---C--LYGLNLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp ---T--TTTCCCSEEEEESSCCCSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred ---c--ccCccccEEECcCCcccccCHHHhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 0 013478999999999999887788888 9999999999999988888889999999999999999998888999
Q ss_pred CCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 510 GMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 510 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
.+++|++|++++|+++++++..|..+++|++|++++|.++.
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 99999999999999999998888899999999999998773
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8e-33 Score=285.79 Aligned_cols=299 Identities=22% Similarity=0.252 Sum_probs=199.3
Q ss_pred cceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCcc
Q psy11648 239 KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK 318 (584)
Q Consensus 239 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~ 318 (584)
+++.|++++|.+. .++...+ ..+++|++|++++|.++...+.++.++++|++|++++|.++.++...+.. +++|+
T Consensus 33 ~l~~L~L~~n~l~--~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~ 107 (477)
T 2id5_A 33 ETRLLDLGKNRIK--TLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG--LSNLT 107 (477)
T ss_dssp TCSEEECCSSCCC--EECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT--CTTCC
T ss_pred CCcEEECCCCccc--eECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC--CCCCC
Confidence 4555555555553 3332222 45555555555555555554445555555555555555555555444433 45555
Q ss_pred EEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCC
Q psy11648 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK 398 (584)
Q Consensus 319 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 398 (584)
+|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--------- 178 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL--------- 178 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC---------
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC---------
Confidence 55555555554444444444555555555554444444444444444444444444444433334444444
Q ss_pred CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCC-CCCChhhHHHhhCCCcEEEccCCccc
Q psy11648 399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI-QEVPVNFLQTFADSLRKLYLDFNEIK 477 (584)
Q Consensus 399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~~L~~L~l~~n~l~ 477 (584)
+.|++++|.+....... +..+++|+.|++++|.. ..++...+.. .+|++|++++|++.
T Consensus 179 ------------------~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 179 ------------------IVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLT 237 (477)
T ss_dssp ------------------CEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTT--CCCSEEEEESSCCC
T ss_pred ------------------cEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccC--ccccEEECcCCccc
Confidence 45555555444433322 23468899999998764 4566555543 69999999999999
Q ss_pred ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccc-c
Q psy11648 478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV-F 556 (584)
Q Consensus 478 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~ 556 (584)
.++...+..+++|++|++++|.+....+..|..+++|++|++++|++.++.+..|..+++|++|++++|+++.+|... .
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence 888888999999999999999999988888999999999999999999999999999999999999999999988765 5
Q ss_pred CCCCcceEECCCCCCC
Q psy11648 557 SNTIIEKLDISYNQDK 572 (584)
Q Consensus 557 ~~~~L~~l~l~~n~l~ 572 (584)
.+++|+.|++++|+++
T Consensus 318 ~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 318 SVGNLETLILDSNPLA 333 (477)
T ss_dssp CGGGCCEEECCSSCEE
T ss_pred CCcccCEEEccCCCcc
Confidence 5699999999999987
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-32 Score=273.27 Aligned_cols=308 Identities=20% Similarity=0.322 Sum_probs=196.0
Q ss_pred ccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCc
Q psy11648 238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317 (584)
Q Consensus 238 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L 317 (584)
++++.++++++.+. .+|..++ ..+++|++|++++|.++..++..+..+++|++|++++|.++.+++..+.. +++|
T Consensus 45 ~~l~~l~l~~~~l~--~l~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR--KLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--VPLL 119 (390)
T ss_dssp CCCSEEEEESCEES--EECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTC
T ss_pred CCceEEEecCCchh--hCChhHh-cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC--CCCC
Confidence 34444444444442 3444433 44555555555555555444444555555555555555555444443333 4555
Q ss_pred cEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCC
Q psy11648 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397 (584)
Q Consensus 318 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 397 (584)
++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+++|+.+++++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc
Confidence 55555555555444444455555555555555555554445555555555655555555441 334556666666666
Q ss_pred CCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCccc
Q psy11648 398 KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477 (584)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 477 (584)
.+.+.. ....++.+++++|.+...+... .++|+.|++++|.++.. ..+..+ ++|++|++++|.+.
T Consensus 197 ~l~~~~--------~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 197 LLSTLA--------IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELE 261 (390)
T ss_dssp CCSEEE--------CCSSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCC
T ss_pred cccccC--------CCCcceEEECCCCeeeeccccc----cccccEEECCCCCCccc--HHHcCC-CCccEEECCCCcCC
Confidence 554321 2235566666666666554322 46788888888888775 356666 88999999999888
Q ss_pred ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC
Q psy11648 478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557 (584)
Q Consensus 478 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~ 557 (584)
+..+..+..+++|++|++++|.+++. +..+..+++|++|++++|++.++++. +..+++|++|++++|+++.+| +..
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~--~~~ 337 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK--LST 337 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC--CCT
T ss_pred CcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC--chh
Confidence 88778888889999999999988764 44567788999999999988876543 667889999999999988886 566
Q ss_pred CCCcceEECCCCCCC
Q psy11648 558 NTIIEKLDISYNQDK 572 (584)
Q Consensus 558 ~~~L~~l~l~~n~l~ 572 (584)
+++|+.|++++|+++
T Consensus 338 ~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWD 352 (390)
T ss_dssp TCCCSEEECCSSCEE
T ss_pred hccCCEEEcCCCCcc
Confidence 789999999999876
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=264.68 Aligned_cols=307 Identities=23% Similarity=0.296 Sum_probs=226.1
Q ss_pred hcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccC
Q psy11648 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYN 287 (584)
Q Consensus 208 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 287 (584)
+..+++|++|+++++.+... ..+..+++|++|++++|.+. .++. + ..+++|++|++++|.++..+ ++..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~--~~~~--~-~~l~~L~~L~L~~n~i~~~~--~~~~ 108 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQIT--DISP--L-SNLVKLTNLYIGTNKITDIS--ALQN 108 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCC--CCGG--G-TTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred chhcccccEEEEeCCccccc----hhhhhcCCccEEEccCCccc--cchh--h-hcCCcCCEEEccCCcccCch--HHcC
Confidence 55788899999999887654 24777888888888888775 5555 3 68888888888888887764 5788
Q ss_pred CCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCE
Q psy11648 288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367 (584)
Q Consensus 288 l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 367 (584)
+++|++|++++|.+..++. +.. +++|+.|++++|......+ .+..++.|++|++++|.+.+..+ +..+++|+.
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~~~--l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--LAN--LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GTT--CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CCcCCEEECcCCcccCchh--hcc--CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 8888888888888776655 232 7777777777775444332 26667777777777776665533 556666666
Q ss_pred EeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEcc
Q psy11648 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447 (584)
Q Consensus 368 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 447 (584)
|++++|.+.+..+ +..+++|+.+++++|.+.+.. . ...+++|++|+++
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---------------------------~---~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT---------------------------P---VANMTRLNSLKIG 229 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---------------------------G---GGGCTTCCEEECC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCc---------------------------h---hhcCCcCCEEEcc
Confidence 6666666665422 555666666666666555432 2 2235778888888
Q ss_pred CCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527 (584)
Q Consensus 448 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 527 (584)
+|.++.++. +..+ ++|++|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++++.
T Consensus 230 ~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 230 NNKITDLSP--LANL-SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp SSCCCCCGG--GTTC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred CCccCCCcc--hhcC-CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence 888877764 6666 8888888888888765 3577888899999999988775 4578889999999999999888
Q ss_pred CcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648 528 TGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 528 ~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~ 572 (584)
.+..+..+++|++|++++|+++.++. +..+++|+.|++++|+++
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred ChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 88888889999999999999998776 777899999999999886
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.1e-31 Score=268.42 Aligned_cols=342 Identities=18% Similarity=0.194 Sum_probs=244.6
Q ss_pred ccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhh
Q psy11648 179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY 258 (584)
Q Consensus 179 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~ 258 (584)
.+..+. .+++|++|+++++.+++.+ .+..+++|++|++++|.+.+. + +..+++|++|++++|.+. .++
T Consensus 34 ~~~~~~-~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~--~~~-- 101 (457)
T 3bz5_A 34 DTISEE-QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLT--NLD-- 101 (457)
T ss_dssp SEEEHH-HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCS--CCC--
T ss_pred cccChh-HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCc--eee--
Confidence 344555 7899999999999998763 588999999999999988765 2 788899999999999886 444
Q ss_pred HhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCC
Q psy11648 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL 338 (584)
Q Consensus 259 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 338 (584)
+ +.+++|++|++++|.+++++ +..+++|++|++++|+++.++ +.. +++|+.|++++|...+.. .+..+
T Consensus 102 -~-~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~--l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 102 -V-TPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSH--NTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp -C-TTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTT--CTTCCEEECTTCSCCCCC--CCTTC
T ss_pred -c-CCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---ccc--CCcCCEEECCCCCccccc--ccccC
Confidence 3 78999999999999988863 788899999999999988764 222 889999999998544332 46788
Q ss_pred CCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCce
Q psy11648 339 KELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN 418 (584)
Q Consensus 339 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~ 418 (584)
++|+.|++++|.++++. +..+++|+.|++++|.+++. .+..+++|++|++++|.+++++ ...++.++.
T Consensus 170 ~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip------~~~l~~L~~ 237 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID------VTPLTQLTY 237 (457)
T ss_dssp TTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC------CTTCTTCSE
T ss_pred CcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC------ccccCCCCE
Confidence 89999999999888863 67788999999999988876 3778899999999999988754 224567888
Q ss_pred EECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCc
Q psy11648 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498 (584)
Q Consensus 419 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 498 (584)
+++++|+++..+. ..+++|+.|+++.+.+. .|++++|.+.+..+ ++.+++|+.|++++|
T Consensus 238 L~l~~N~l~~~~~----~~l~~L~~L~l~~n~L~---------------~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 238 FDCSVNPLTELDV----STLSKLTTLHCIQTDLL---------------EIDLTHNTQLIYFQ--AEGCRKIKELDVTHN 296 (457)
T ss_dssp EECCSSCCSCCCC----TTCTTCCEEECTTCCCS---------------CCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred EEeeCCcCCCcCH----HHCCCCCEEeccCCCCC---------------EEECCCCccCCccc--ccccccCCEEECCCC
Confidence 8888888887653 23567777776655433 33344443322211 234455555555555
Q ss_pred cccccccc--------ccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc-------------C
Q psy11648 499 NIAVVVKR--------TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-------------S 557 (584)
Q Consensus 499 ~~~~~~~~--------~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~-------------~ 557 (584)
...+.+|. .+..+++|++|++++|++++++ +..+++|+.|++++|++++++. +. .
T Consensus 297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l~~-L~~L~l~~n~l~g~~~ 372 (457)
T 3bz5_A 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQ 372 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBCTT-GGGSSGGGTSEEEEEE
T ss_pred cccceeccCCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCccc-cccccccCCcEEecce
Confidence 43332221 1344566666666666666642 5566666666666666665431 11 2
Q ss_pred CCCcceEECCCCCCC-CCCCCCCCC
Q psy11648 558 NTIIEKLDISYNQDK-IRPGRESNP 581 (584)
Q Consensus 558 ~~~L~~l~l~~n~l~-~~p~~~~~~ 581 (584)
+..|+.+++++|.++ .+|..++..
T Consensus 373 ~~~l~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 373 TITMPKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp EEECCCBCCBTTBEEEECCTTCBCT
T ss_pred eeecCccccccCcEEEEcChhHhcc
Confidence 356788899999999 899887654
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.3e-31 Score=261.12 Aligned_cols=305 Identities=23% Similarity=0.326 Sum_probs=250.6
Q ss_pred hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~ 265 (584)
.+++|++|+++++.+.... .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. .++. + ..++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~---~~-~~~l~~L~~L~L~~n~i~--~~~~--~-~~l~ 110 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDI---SP-LSNLVKLTNLYIGTNKIT--DISA--L-QNLT 110 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCC--CCGG--G-TTCT
T ss_pred hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccc---hh-hhcCCcCCEEEccCCccc--CchH--H-cCCC
Confidence 7899999999999998764 388999999999999998765 33 889999999999999886 5653 3 7999
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 345 (584)
+|++|++++|.++..++ +..+++|++|++++|........ +.. +++|+.|++++|.+....+ +..+++|++|+
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~--l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSN--MTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTT--CTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhh--CCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 99999999999998765 88999999999999955433333 333 8999999999999987654 78899999999
Q ss_pred ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425 (584)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~ 425 (584)
+++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++.+. +.
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~----------------- 240 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA----------------- 240 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT-----------------
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh-----------------
Confidence 99999987754 7889999999999999988743 7889999999999998876543 11
Q ss_pred cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505 (584)
Q Consensus 426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 505 (584)
.+++|++|++++|.++.++ .+..+ ++|++|++++|++.+. ..+..+++|++|++++|.+.+..+
T Consensus 241 -----------~l~~L~~L~l~~n~l~~~~--~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 241 -----------NLSQLTWLEIGTNQISDIN--AVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp -----------TCTTCCEEECCSSCCCCCG--GGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred -----------cCCCCCEEECCCCccCCCh--hHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh
Confidence 2467777777777777653 35565 7888888888888776 346778889999999998888888
Q ss_pred cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
..+..+++|++|++++|+++++++ +..+++|++|++++|.|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888889999999999999888876 677889999999999875
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-31 Score=267.34 Aligned_cols=298 Identities=22% Similarity=0.276 Sum_probs=265.2
Q ss_pred cCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCc
Q psy11648 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN 342 (584)
Q Consensus 263 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 342 (584)
.++++++++++++.++.++...+..+++|++|++++|.++.++...+.. +++|++|++++|.++...+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC--CCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 5689999999999999998877899999999999999999988877766 99999999999999999888899999999
Q ss_pred EEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECC
Q psy11648 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422 (584)
Q Consensus 343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~ 422 (584)
+|++++|.+..+.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.+.. ..+.++.++++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~l~~L~~L~l~ 194 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS------LIPSLFHANVS 194 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGG------GCTTCSEEECC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccc------cccccceeecc
Confidence 999999999988777788999999999999999998888899999999999999999887533 34578999999
Q ss_pred CCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccc
Q psy11648 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502 (584)
Q Consensus 423 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 502 (584)
+|.++.++. .++++.|++++|.+..++... . ++|++|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 195 ~n~l~~~~~------~~~L~~L~l~~n~l~~~~~~~---~-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 195 YNLLSTLAI------PIAVEELDASHNSINVVRGPV---N-VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp SSCCSEEEC------CSSCSEEECCSSCCCEEECCC---C-SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred cccccccCC------CCcceEEECCCCeeeeccccc---c-ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 998886543 468999999999998776432 2 8999999999999876 467889999999999999999
Q ss_pred ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCC
Q psy11648 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNP 581 (584)
Q Consensus 503 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~ 581 (584)
..+..|..+++|++|++++|++++++. .+..+++|++|++++|+++.+|..+..+++|+.|++++|+++.+|...+..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 340 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC
T ss_pred cChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhcc
Confidence 989999999999999999999998754 456789999999999999999999888999999999999999888655543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=4.8e-31 Score=279.31 Aligned_cols=308 Identities=20% Similarity=0.322 Sum_probs=204.5
Q ss_pred ccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCc
Q psy11648 238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317 (584)
Q Consensus 238 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L 317 (584)
++++.++++++.+. .+|..++ ..+++|++|++++|.+++.++..+..+++|++|++++|.++.+++..+.. +++|
T Consensus 51 ~~l~~l~l~~~~l~--~lp~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNSTMR--KLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--VPLL 125 (597)
T ss_dssp CCCSEEEESSCEES--EECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTC
T ss_pred CCceEEEeeCCCCC--CcCHHHH-ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC--CCCC
Confidence 34444444444442 4444444 45555555555555555555445555555555555555555555544443 5555
Q ss_pred cEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCC
Q psy11648 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397 (584)
Q Consensus 318 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 397 (584)
++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+++|+.+++++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 55555555555554444555566666666666665555555555666666666666655542 334566666666666
Q ss_pred CCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCccc
Q psy11648 398 KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477 (584)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 477 (584)
.+.+.. ....++.+++++|.+..++... .++|+.|++++|.++.. ..+..+ ++|+.|++++|.+.
T Consensus 203 ~l~~l~--------~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 203 LLSTLA--------IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELE 267 (597)
T ss_dssp CCSEEE--------CCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCC
T ss_pred cccccc--------CCchhheeeccCCccccccccc----CCCCCEEECCCCCCCCC--hhhccC-CCCCEEECCCCccC
Confidence 554321 2235666667666666555433 36788999999888775 456666 89999999999998
Q ss_pred ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC
Q psy11648 478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557 (584)
Q Consensus 478 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~ 557 (584)
+..+..|..+++|++|++++|.+.+. +..+..+++|+.|++++|.+..+++ .+..+++|++|++++|.++.+| +..
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~--~~~ 343 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLK--LST 343 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCC--CCT
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcC--hhh
Confidence 88888888999999999999998875 5566778999999999999987654 4677889999999999998886 566
Q ss_pred CCCcceEECCCCCCC
Q psy11648 558 NTIIEKLDISYNQDK 572 (584)
Q Consensus 558 ~~~L~~l~l~~n~l~ 572 (584)
+++|+.|++++|+++
T Consensus 344 ~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 344 HHTLKNLTLSHNDWD 358 (597)
T ss_dssp TCCCSEEECCSSCEE
T ss_pred cCCCCEEEeeCCCCC
Confidence 789999999999876
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-30 Score=275.41 Aligned_cols=298 Identities=22% Similarity=0.281 Sum_probs=266.3
Q ss_pred cCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCc
Q psy11648 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN 342 (584)
Q Consensus 263 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 342 (584)
.+.+++.++++++.++.+++..+..+++|++|++++|.++.++...+.. +++|+.|++++|.++...+..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC--CCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4678999999999999999888899999999999999999988877766 99999999999999999888899999999
Q ss_pred EEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECC
Q psy11648 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422 (584)
Q Consensus 343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~ 422 (584)
+|++++|.+.++.+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.+.. ..+.++.++++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~l~~L~~L~l~ 200 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS------LIPSLFHANVS 200 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG------GCTTCSEEECC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh------hhhhhhhhhcc
Confidence 999999999988777789999999999999999999888899999999999999999887543 34577999999
Q ss_pred CCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccc
Q psy11648 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502 (584)
Q Consensus 423 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 502 (584)
+|.+..++. +++|+.|++++|.++.++... +++|+.|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 201 ~n~l~~l~~------~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 201 YNLLSTLAI------PIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp SSCCSEEEC------CTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred cCccccccC------CchhheeeccCCccccccccc----CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCC
Confidence 999886543 578999999999998776432 27899999999999874 568889999999999999999
Q ss_pred ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCC
Q psy11648 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNP 581 (584)
Q Consensus 503 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~ 581 (584)
..|..|..+++|+.|++++|++++++ ..+..+++|++|++++|.++.+|..+..+++|+.|++++|+++.+|...+..
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 346 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCC
Confidence 99999999999999999999999874 4456799999999999999999999988999999999999999888665543
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2.3e-29 Score=256.30 Aligned_cols=313 Identities=20% Similarity=0.206 Sum_probs=249.6
Q ss_pred hhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCcccccccccc
Q psy11648 205 GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYS 284 (584)
Q Consensus 205 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 284 (584)
+..++++++|++|++++|.+.+. + .+..+++|++|++++|.+. .++ + ..+++|++|++++|.+++.+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~--~~~---~-~~l~~L~~L~Ls~N~l~~~~--- 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNIT--TLD---L-SQNTNLTYLACDSNKLTNLD--- 101 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCS--CCC---C-TTCTTCSEEECCSSCCSCCC---
T ss_pred ccChhHcCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCC--eEc---c-ccCCCCCEEECcCCCCceee---
Confidence 34577899999999999988765 3 6888999999999999986 454 3 78999999999999998863
Q ss_pred ccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcC
Q psy11648 285 LYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364 (584)
Q Consensus 285 l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 364 (584)
+..+++|++|++++|+++.++ +.. +++|++|++++|.+++. .+..+++|++|++++|...+.. .+..+++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~---~~~--l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD---VSQ--NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC---CTT--CTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred cCCCCcCCEEECCCCcCCeec---CCC--CCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 788999999999999988874 333 89999999999998885 3778899999999999544332 4677889
Q ss_pred CCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEE
Q psy11648 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSL 444 (584)
Q Consensus 365 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L 444 (584)
|+.|++++|.++++ + +..+++|+.|++++|.+++.+ +..++.++.+++++|++++++ ...+++|+.|
T Consensus 172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~------l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L 238 (457)
T 3bz5_A 172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD------LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYF 238 (457)
T ss_dssp CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC------CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEE
T ss_pred CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec------cccCCCCCEEECcCCcccccC----ccccCCCCEE
Confidence 99999999998886 3 778889999999999888763 234567788888888877754 3346778888
Q ss_pred EccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCC
Q psy11648 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524 (584)
Q Consensus 445 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i 524 (584)
++++|.++.++. ..+ ++|+.|+++++ +|+.+++++|.+.+.+| ++.+++|+.|++++|..
T Consensus 239 ~l~~N~l~~~~~---~~l-~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 239 DCSVNPLTELDV---STL-SKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp ECCSSCCSCCCC---TTC-TTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred EeeCCcCCCcCH---HHC-CCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 888887777652 334 67777776654 56788899998777766 57899999999999975
Q ss_pred CCcCcc--------cccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCC
Q psy11648 525 SMLTGE--------QFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP 575 (584)
Q Consensus 525 ~~~~~~--------~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p 575 (584)
.+..|. .+..+++|++|++++|++++++ +..+++|+.|++++|+++.+|
T Consensus 299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT
T ss_pred cceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc
Confidence 543332 3567899999999999999985 888999999999999999765
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.3e-29 Score=243.14 Aligned_cols=287 Identities=20% Similarity=0.289 Sum_probs=203.0
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 345 (584)
.++.++++++.++.++. .+ .+++++|++++|.++.++...+.. +++|++|++++|.++...+..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKG--LQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhC--CCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 46666666666665543 22 246666777766666665544444 66677777777766666666666677777777
Q ss_pred ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCC--CChhhhcccccCCCCceEECCC
Q psy11648 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD--FNLNVFSNITSKQTPMNLNLSN 423 (584)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~l~~L~l~~ 423 (584)
+++|.+..+....+ ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+... .++.+++++
T Consensus 109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l----~L~~L~l~~ 181 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL----KLNYLRISE 181 (332)
T ss_dssp CCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC----CCSCCBCCS
T ss_pred CCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC----ccCEEECcC
Confidence 77776664432221 567777777777776655666777777777777777653 333333222 667777777
Q ss_pred CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503 (584)
Q Consensus 424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 503 (584)
|.++.++... .++|++|++++|.++.++...+..+ ++|++|++++|++.+.++..+..+++|++|++++|.+. .
T Consensus 182 n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 182 AKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp SBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred CCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 7777655433 2688889999998888877778777 89999999999998888778888999999999999888 5
Q ss_pred cccccCCCCCccEEECCCCCCCCcCcccccCC------CCccEEEcCCCcCC--ccC-ccccCCCCcceEECCCCC
Q psy11648 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS------FKLRILNISHNRLR--SLP-RDVFSNTIIEKLDISYNQ 570 (584)
Q Consensus 504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~------~~L~~L~L~~n~l~--~lp-~~l~~~~~L~~l~l~~n~ 570 (584)
+|..+..+++|++|++++|+++++++..|... +.|+.|++++|.+. .++ ..+..+++|+.+++++|.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 56678889999999999999998888777653 67899999999887 444 445556899999998875
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-28 Score=240.19 Aligned_cols=267 Identities=24% Similarity=0.328 Sum_probs=165.4
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 345 (584)
.+++|++++|.+++.++..+..+++|++|++++|.++.+.+..+.. +++|++|++++|.++...... .++|++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~l~~~~---~~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP--LVKLERLYLSKNQLKELPEKM---PKTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCSBCCSSC---CTTCCEEE
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC--CCCCCEEECCCCcCCccChhh---cccccEEE
Confidence 4444444444444444434444444444444444444443333322 444444444444444332211 14555566
Q ss_pred ccCCcCCCcChhhhccCcCCCEEeccCCCCCc--cCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY--IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423 (584)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~ 423 (584)
+++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++..+.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~------------------- 188 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ------------------- 188 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-------------------
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-------------------
Confidence 66665555555555556666666666665542 334455566666666666666554321
Q ss_pred CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503 (584)
Q Consensus 424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 503 (584)
.. .++|++|++++|.++.+++..+..+ ++|++|++++|.+.+.++..+..+++|++|++++|.+. .
T Consensus 189 --------~~----~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 189 --------GL----PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp --------SC----CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred --------cc----cccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence 11 2567778888877777766677777 88888888888888777777788888888888888887 4
Q ss_pred cccccCCCCCccEEECCCCCCCCcCcccccC------CCCccEEEcCCCcCCc--cC-ccccCCCCcceEECCCCC
Q psy11648 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYF------SFKLRILNISHNRLRS--LP-RDVFSNTIIEKLDISYNQ 570 (584)
Q Consensus 504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~------~~~L~~L~L~~n~l~~--lp-~~l~~~~~L~~l~l~~n~ 570 (584)
+|..+..+++|++|++++|+++++++..|+. .+.|+.|++++|.++. ++ ..+..+++++.+++++|+
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5667888888889999988888888777754 3678889999998773 44 344445889999998884
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.6e-31 Score=273.60 Aligned_cols=390 Identities=17% Similarity=0.154 Sum_probs=200.4
Q ss_pred cceeeEEEecCccccccc-ccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecc
Q psy11648 69 ACYDLTLKITNTQIEELP-SGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLR 147 (584)
Q Consensus 69 ~~L~~~L~ls~n~i~~l~-~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~ 147 (584)
++|+ +||+++|++...+ ..++..+.+|+ +|++++|.+++.....+ +..+..+++|++|+++
T Consensus 3 ~~l~-~L~Ls~~~l~~~~~~~~~~~~~~L~--~L~L~~~~l~~~~~~~l---------------~~~l~~~~~L~~L~Ls 64 (461)
T 1z7x_W 3 LDIQ-SLDIQCEELSDARWAELLPLLQQCQ--VVRLDDCGLTEARCKDI---------------SSALRVNPALAELNLR 64 (461)
T ss_dssp EEEE-EEEEESCCCCHHHHHHHHHHHTTCS--EEEEESSCCCHHHHHHH---------------HHHHHTCTTCCEEECT
T ss_pred ccce-ehhhhhcccCchhHHHHHhhcCCcc--EEEccCCCCCHHHHHHH---------------HHHHHhCCCcCEEeCC
Confidence 4577 7788777776443 33355666677 88888777665433322 3345666778888888
Q ss_pred ccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhcc----CCcEEEcCCCcccc----cchhhhcCCCCCCEEEc
Q psy11648 148 CNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLS----NLETLLLRCNKITD----LNGNLFRHLYNLQELSL 219 (584)
Q Consensus 148 ~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l 219 (584)
+|.+.+..... +...++ +|++|++++|.++. ..+..+..+++|++|++
T Consensus 65 ~n~l~~~~~~~------------------------l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 120 (461)
T 1z7x_W 65 SNELGDVGVHC------------------------VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120 (461)
T ss_dssp TCCCHHHHHHH------------------------HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred CCcCChHHHHH------------------------HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEEC
Confidence 87766543221 111233 68888888877764 33556777788888888
Q ss_pred CCCccceeecCCcccc-----ccccceEEeecccccCCC---CchhhHhhhcCCCCCEEEccCcccccccccccc-----
Q psy11648 220 SFNKLQIIELNSNVFD-----VFEKLQLLEISFSLFNSN---EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY----- 286 (584)
Q Consensus 220 ~~~~l~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~---~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~----- 286 (584)
++|.+.+. ....+. ..++|++|++++|.+... .++..+ ..+++|++|++++|.++......+.
T Consensus 121 s~n~i~~~--~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 196 (461)
T 1z7x_W 121 SDNLLGDA--GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL--RAKPDFKELTVSNNDINEAGVRVLCQGLKD 196 (461)
T ss_dssp CSSBCHHH--HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred CCCcCchH--HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH--hhCCCCCEEECcCCCcchHHHHHHHHHHhc
Confidence 88776543 111111 134567777776665411 122222 4566777777777766543322222
Q ss_pred CCCCCcEEEcccCCCcccc----cccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccC
Q psy11648 287 NLTSLNYINLEYNKISKIH----NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362 (584)
Q Consensus 287 ~l~~L~~L~l~~~~l~~i~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 362 (584)
..++|++|++++|.++..+ ...+.. +++|++|++++|.++......+ .+..+..+
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l-------------------~~~~~~~~ 255 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVAS--KASLRELALGSNKLGDVGMAEL-------------------CPGLLHPS 255 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHH-------------------HHHHTSTT
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHh--CCCccEEeccCCcCChHHHHHH-------------------HHHHhcCC
Confidence 2446666666666655321 111111 4555555555554443211000 01111123
Q ss_pred cCCCEEeccCCCCCcc----CCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccccccccccccc
Q psy11648 363 NNMLNIVLSFNQIKYI----YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP 438 (584)
Q Consensus 363 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~ 438 (584)
++|+.|++++|.+++. .+..+..+++|++|++++|.+++.....+.... ....
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----------------------~~~~ 312 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-----------------------LEPG 312 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-----------------------TSTT
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-----------------------ccCC
Confidence 4444555554444432 123344455666666666655443332222110 0001
Q ss_pred CcccEEEccCCCCCCCCh----hhHHHhhCCCcEEEccCCcccccCccccC-----CCcccCeeeccCccccc----ccc
Q psy11648 439 IYIKSLDLSNNRIQEVPV----NFLQTFADSLRKLYLDFNEIKHLDATAFG-----NLDVLELLSLEHNNIAV----VVK 505 (584)
Q Consensus 439 ~~L~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~----~~~ 505 (584)
++|++|++++|.++.... ..+..+ ++|++|++++|.+.+..+..+. ..++|++|++++|.+++ .++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQN-RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHC-SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhC-CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 345555555554443211 223333 5556666665555443222221 14566667776666664 445
Q ss_pred cccCCCCCccEEECCCCCCCCcCccccc-----CCCCccEEEcCCCcCC
Q psy11648 506 RTFIGMPNLQIIDLSFNEISMLTGEQFY-----FSFKLRILNISHNRLR 549 (584)
Q Consensus 506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~-----~~~~L~~L~L~~n~l~ 549 (584)
..+..+++|++|++++|++++.....+. ...+|++|.+.++.+.
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 5566667777777777766643222221 2345777777766555
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-31 Score=276.21 Aligned_cols=383 Identities=17% Similarity=0.156 Sum_probs=237.4
Q ss_pred cCCcEEEcCCCcccccch-hhhcCCCCCCEEEcCCCcccee--ecCCccccccccceEEeecccccCCCCchhhHhhhcC
Q psy11648 188 SNLETLLLRCNKITDLNG-NLFRHLYNLQELSLSFNKLQII--ELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNL 264 (584)
Q Consensus 188 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~ 264 (584)
++|++|+++++.++.... ..+..+++|++|++++|.+... ...+..+..+++|++|++++|.+. +..+..++ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~~~l~-~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-DVGVHCVL-QGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-HHHHHHHH-HTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-hHHHHHHH-HHH
Confidence 456666666666654332 2255666666666666665422 012344555566666766666654 22222222 334
Q ss_pred C----CCCEEEccCccccc----cccccccCCCCCcEEEcccCCCcccccccccc---cccCCccEEEcCCCcccccc--
Q psy11648 265 N----TLEWLAMDNNNIKN----IRNYSLYNLTSLNYINLEYNKISKIHNNLFHF---NIHKRLKEIRLSNNYLELIE-- 331 (584)
Q Consensus 265 ~----~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~---~~~~~L~~L~l~~~~~~~~~-- 331 (584)
+ +|++|++++|.++. ..+..+..+++|++|++++|.++......+.. ...++|++|++++|.++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 57777777776663 22445666777777777777665322111110 00345777777777666532
Q ss_pred --cccccCCCCCcEEEccCCcCCCcChhhhc-----cCcCCCEEeccCCCCCcc----CCccCCCCCCCcEEecCCCCCC
Q psy11648 332 --SDTFYNLKELNTITLSYNLLKSIKTTSFK-----NLNNMLNIVLSFNQIKYI----YPNAFVNLPNLVKLDLQDNKLK 400 (584)
Q Consensus 332 --~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~ 400 (584)
+..+..+++|++|++++|.+.+.....+. ..++|+.|++++|.+++. .+..+..+++|++|++++|.++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 33445567777777777776543333222 245777777777777653 2444556777777777777766
Q ss_pred CCChhhhcc-c-ccCCCCceEECCCCcccccccc---ccccccCcccEEEccCCCCCCCChhhHHHh----hCCCcEEEc
Q psy11648 401 DFNLNVFSN-I-TSKQTPMNLNLSNNYITNLYEN---DKKQAPIYIKSLDLSNNRIQEVPVNFLQTF----ADSLRKLYL 471 (584)
Q Consensus 401 ~~~~~~~~~-~-~~~~~l~~L~l~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~----~~~L~~L~l 471 (584)
+.....+.. . ...+.++.|++++|.++..... .....+++|++|++++|.+++.....+... .++|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 543322221 1 1245777777777777653211 112346889999999998875443333322 158999999
Q ss_pred cCCcccccC----ccccCCCcccCeeeccCcccccccccccC----C-CCCccEEECCCCCCCC----cCcccccCCCCc
Q psy11648 472 DFNEIKHLD----ATAFGNLDVLELLSLEHNNIAVVVKRTFI----G-MPNLQIIDLSFNEISM----LTGEQFYFSFKL 538 (584)
Q Consensus 472 ~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~----~-~~~L~~L~ls~n~i~~----~~~~~~~~~~~L 538 (584)
++|.+++.. +..+..+++|++|++++|.+.+..+..+. . +++|++|++++|++++ ..+..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 999987653 34566779999999999998875443332 2 7899999999999985 556677789999
Q ss_pred cEEEcCCCcCCc-----cCcccc-CCCCcceEECCCCCCC
Q psy11648 539 RILNISHNRLRS-----LPRDVF-SNTIIEKLDISYNQDK 572 (584)
Q Consensus 539 ~~L~L~~n~l~~-----lp~~l~-~~~~L~~l~l~~n~l~ 572 (584)
++|++++|+++. +...+. ...+|+.|.+.++.+.
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 999999999883 121222 2357888888888775
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=7.4e-28 Score=235.87 Aligned_cols=268 Identities=22% Similarity=0.317 Sum_probs=170.8
Q ss_pred cceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCcc
Q psy11648 239 KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK 318 (584)
Q Consensus 239 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~ 318 (584)
+++.|++++|.+. .++...+ ..+++|++|++++|.+++..+..+..+++|++|++++|.++.++... .++|+
T Consensus 53 ~l~~L~L~~n~i~--~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-----~~~L~ 124 (330)
T 1xku_A 53 DTALLDLQNNKIT--EIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-----PKTLQ 124 (330)
T ss_dssp TCCEEECCSSCCC--CBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-----CTTCC
T ss_pred CCeEEECCCCcCC--EeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-----ccccc
Confidence 4444444444443 3333223 56666666666666666665556666667777777777666665543 35677
Q ss_pred EEEcCCCcccccccccccCCCCCcEEEccCCcCCC--cChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCC
Q psy11648 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS--IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD 396 (584)
Q Consensus 319 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 396 (584)
+|++++|.++...+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.+. ..+ .++|++|++++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~--~~~L~~L~l~~ 201 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QGL--PPSLTELHLDG 201 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SSC--CTTCSEEECTT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-ccc--cccCCEEECCC
Confidence 77777777776666666777777777777777653 44556777778888888888777653 322 26788888888
Q ss_pred CCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcc
Q psy11648 397 NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI 476 (584)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l 476 (584)
|.+++..+..+.. +++|++|++++|.++.++...+..+ ++|++|++++|++
T Consensus 202 n~l~~~~~~~~~~----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l 252 (330)
T 1xku_A 202 NKITKVDAASLKG----------------------------LNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKL 252 (330)
T ss_dssp SCCCEECTGGGTT----------------------------CTTCCEEECCSSCCCEECTTTGGGS-TTCCEEECCSSCC
T ss_pred CcCCccCHHHhcC----------------------------CCCCCEEECCCCcCceeChhhccCC-CCCCEEECCCCcC
Confidence 8777654443332 3556666666666665555555555 6677777777766
Q ss_pred cccCccccCCCcccCeeeccCcccccccccccCC------CCCccEEECCCCCCC--CcCcccccCCCCccEEEcCCCc
Q psy11648 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG------MPNLQIIDLSFNEIS--MLTGEQFYFSFKLRILNISHNR 547 (584)
Q Consensus 477 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~ls~n~i~--~~~~~~~~~~~~L~~L~L~~n~ 547 (584)
..++ ..+..+++|++|++++|.++...+..|.. .++++.+++++|.+. .+.|..|..++.++.+++++|+
T Consensus 253 ~~lp-~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 253 VKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCC-hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6443 34566677777777777776655555533 367888888888876 4667778888888888888874
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.1e-28 Score=238.70 Aligned_cols=247 Identities=24% Similarity=0.331 Sum_probs=133.7
Q ss_pred hcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCC
Q psy11648 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL 341 (584)
Q Consensus 262 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 341 (584)
..+++|++|++++|.++...+.++..+++|++|++++|.++.++... .++|++|++++|.++...+..+..+++|
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccC
Confidence 44555555555555555444444555555555555555554444432 2344444444444444433334444444
Q ss_pred cEEEccCCcCCC--cChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceE
Q psy11648 342 NTITLSYNLLKS--IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL 419 (584)
Q Consensus 342 ~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L 419 (584)
+.|++++|.+.. ..+..+..+ +|+.+++++|.++++ |..+. ++|++|++++|.+++..+..+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l------------ 213 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDL------------ 213 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSS------------
T ss_pred CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHh------------
Confidence 444444444431 222333333 444444444444443 11111 344444444444443322221
Q ss_pred ECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcc
Q psy11648 420 NLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499 (584)
Q Consensus 420 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 499 (584)
..+++|++|++++|.++.++...+..+ ++|++|++++|++..++. .+..+++|++|++++|.
T Consensus 214 ----------------~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 214 ----------------LRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp ----------------TTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSC
T ss_pred ----------------cCCCCCCEEECCCCcCCcCChhHhhCC-CCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCC
Confidence 224566666777666666665566666 677777777777664433 46667777777777777
Q ss_pred cccccccccCC------CCCccEEECCCCCCC--CcCcccccCCCCccEEEcCCCc
Q psy11648 500 IAVVVKRTFIG------MPNLQIIDLSFNEIS--MLTGEQFYFSFKLRILNISHNR 547 (584)
Q Consensus 500 ~~~~~~~~~~~------~~~L~~L~ls~n~i~--~~~~~~~~~~~~L~~L~L~~n~ 547 (584)
++...+..|.. .++|+.|++++|.+. ++.+..|..+++|+.+++++|+
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77665555544 367888888888877 6777888888888888888874
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.3e-29 Score=264.18 Aligned_cols=329 Identities=13% Similarity=0.092 Sum_probs=163.5
Q ss_pred hccCCcEEEcCCCccccc----chhhhcCCCCCCEEEcCCCcccee--ecCCccccccccceEEeecccccCCCCchhhH
Q psy11648 186 LLSNLETLLLRCNKITDL----NGNLFRHLYNLQELSLSFNKLQII--ELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI 259 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 259 (584)
.+++|++|++++|.+.+. .+..+..+++|++|+++++.+.+. ...+..+..+++|++|++++|.+. .++..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHHH
Confidence 567777777777765543 233445667777777777665422 012334455667777777776664 455443
Q ss_pred hhhcCCCCCEEEccCcccc---ccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCccccccc-ccc
Q psy11648 260 LNKNLNTLEWLAMDNNNIK---NIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES-DTF 335 (584)
Q Consensus 260 ~~~~~~~L~~L~l~~~~l~---~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l 335 (584)
..+++|++|+++..... ......+..+++|+.++++++....++... .. +++|++|++++|.++.... ..+
T Consensus 240 --~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~--~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 240 --KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF-PF--AAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp --HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG-GG--GGGCCEEEETTCCCCHHHHHHHH
T ss_pred --hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH-hh--cCCCcEEecCCCcCCHHHHHHHH
Confidence 56677777777643211 111224555666777766665433443322 22 5666777776666543222 224
Q ss_pred cCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC-----------CCCCccCC-ccCCCCCCCcEEecCCCCCCCCC
Q psy11648 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF-----------NQIKYIYP-NAFVNLPNLVKLDLQDNKLKDFN 403 (584)
Q Consensus 336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~ 403 (584)
..+++|++|+++++......+.....+++|++|++++ +.+++... .....+++|++|++..+.+++..
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 5666666666662211112222234456666666662 23332211 11223566666666555444332
Q ss_pred hhhhcccccCCCCceEECCCCccccccccccccccCcccEEEcc----CCCCCCCCh-----hhHHHhhCCCcEEEccCC
Q psy11648 404 LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS----NNRIQEVPV-----NFLQTFADSLRKLYLDFN 474 (584)
Q Consensus 404 ~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~----~~~l~~~~~-----~~~~~~~~~L~~L~l~~n 474 (584)
...+. ..+++|+.|+++ .+.+++.|. ..+.++ ++|++|++++|
T Consensus 395 ~~~l~---------------------------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~ 446 (592)
T 3ogk_B 395 LESIG---------------------------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLR 446 (592)
T ss_dssp HHHHH---------------------------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECC
T ss_pred HHHHH---------------------------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecC
Confidence 22221 124455555554 333443321 123334 55666666543
Q ss_pred c--ccccCcccc-CCCcccCeeeccCcccccc-cccccCCCCCccEEECCCCCCCCc-CcccccCCCCccEEEcCCCcCC
Q psy11648 475 E--IKHLDATAF-GNLDVLELLSLEHNNIAVV-VKRTFIGMPNLQIIDLSFNEISML-TGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 475 ~--l~~~~~~~l-~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ls~n~i~~~-~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
. +++.....+ ..+++|++|++++|.+++. .+..+..+++|++|++++|.+++. .+.....+++|++|++++|+++
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 2 332221111 2355566666666655542 223345556666666666665432 1222234556666666666655
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.3e-27 Score=229.86 Aligned_cols=231 Identities=18% Similarity=0.189 Sum_probs=155.4
Q ss_pred cCCccEEEcCC-CcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEE
Q psy11648 314 HKRLKEIRLSN-NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392 (584)
Q Consensus 314 ~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 392 (584)
+++|++|++++ |.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 33333333332 33333333344445555555555555554444445555555555555555554445555555666666
Q ss_pred ecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEcc
Q psy11648 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLD 472 (584)
Q Consensus 393 ~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 472 (584)
++++|.+++..+..+..+ .++|++|++++|.++...+..+..+ + |++|+++
T Consensus 155 ~L~~N~l~~~~p~~l~~l---------------------------~~~L~~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls 205 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSF---------------------------SKLFTSMTISRNRLTGKIPPTFANL-N-LAFVDLS 205 (313)
T ss_dssp ECCSSCCEEECCGGGGCC---------------------------CTTCCEEECCSSEEEEECCGGGGGC-C-CSEEECC
T ss_pred ECcCCcccCcCCHHHhhh---------------------------hhcCcEEECcCCeeeccCChHHhCC-c-ccEEECc
Confidence 666655543322222211 1367777777777663333556665 4 8899999
Q ss_pred CCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC-cc
Q psy11648 473 FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SL 551 (584)
Q Consensus 473 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~l 551 (584)
+|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|+++ .+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9988888888888999999999999999877665 788899999999999999888888999999999999999998 57
Q ss_pred CccccCCCCcceEECCCCCC-CCCC
Q psy11648 552 PRDVFSNTIIEKLDISYNQD-KIRP 575 (584)
Q Consensus 552 p~~l~~~~~L~~l~l~~n~l-~~~p 575 (584)
|.. ..+++|+.+++++|+. ...|
T Consensus 285 p~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCC-ccccccChHHhcCCCCccCCC
Confidence 754 7789999999999984 4544
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.2e-27 Score=228.79 Aligned_cols=253 Identities=21% Similarity=0.258 Sum_probs=145.2
Q ss_pred ccceEEeecccccCCC--CchhhHhhhcCCCCCEEEccC-ccccccccccccCCCCCcEEEcccCCCccccccccccccc
Q psy11648 238 EKLQLLEISFSLFNSN--EFPYYILNKNLNTLEWLAMDN-NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH 314 (584)
Q Consensus 238 ~~L~~L~l~~~~~~~~--~l~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~ 314 (584)
.+++.|+++++.+. + .+|..+ ..+++|++|++++ |.+.+..+..+..+++|++|++++|.++..
T Consensus 50 ~~l~~L~L~~~~l~-~~~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---------- 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP-KPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA---------- 116 (313)
T ss_dssp CCEEEEEEECCCCS-SCEECCGGG--GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE----------
T ss_pred ceEEEEECCCCCcc-CCcccChhH--hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc----------
Confidence 35777777777765 4 456554 5677777777774 666655555666666666666666666532
Q ss_pred CCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCC-CCcEEe
Q psy11648 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP-NLVKLD 393 (584)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~ 393 (584)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..++ .|++|+
T Consensus 117 ----------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 117 ----------------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp ----------------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred ----------------CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 233333444444444444444444444455555555555555555544455555554 566666
Q ss_pred cCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccC
Q psy11648 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF 473 (584)
Q Consensus 394 l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 473 (584)
+++|.+++..+..+... . |+.|++++|.++..++..+..+ ++|++|++++
T Consensus 181 L~~N~l~~~~~~~~~~l----------------------------~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~ 230 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANL----------------------------N-LAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAK 230 (313)
T ss_dssp CCSSEEEEECCGGGGGC----------------------------C-CSEEECCSSEEEECCGGGCCTT-SCCSEEECCS
T ss_pred CcCCeeeccCChHHhCC----------------------------c-ccEEECcCCcccCcCCHHHhcC-CCCCEEECCC
Confidence 66665554333332221 1 4444444444443333444444 5666666666
Q ss_pred CcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCc-CCcc
Q psy11648 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR-LRSL 551 (584)
Q Consensus 474 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~-l~~l 551 (584)
|++.+..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++..|.. ..+++|+.+++++|. +.+.
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 666544433 555667777777777776666666777777777777777776555553 556677777777774 4443
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=228.55 Aligned_cols=245 Identities=21% Similarity=0.337 Sum_probs=137.3
Q ss_pred EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC
Q psy11648 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372 (584)
Q Consensus 293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 372 (584)
.++.++..++.+|..+ .+.++.|++++|.++...+..+..+++|+.|++++|.+..+.+..|..+++|+.|++++
T Consensus 47 ~v~c~~~~l~~iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI-----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EEECCSCCCSSCCSCC-----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred EEEeCCCCcCcCCCCC-----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4444444444444432 23444445555544444444444555555555555555444444444555555555555
Q ss_pred CCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc-cccccccccccccCcccEEEccCCCC
Q psy11648 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY-ITNLYENDKKQAPIYIKSLDLSNNRI 451 (584)
Q Consensus 373 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~l 451 (584)
|.++.+.+..+..+++|++|++++|.+...+...|.. .+.|+.|++++|+ +..++ ...+..+++|++|++++|.+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~---l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR---IPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT---CTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhh---CcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcC
Confidence 5555444444455555555555555544433322222 1233333333321 11111 11223356777777777777
Q ss_pred CCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccc
Q psy11648 452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531 (584)
Q Consensus 452 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 531 (584)
+.+|. +..+ ++|++|++++|++.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|+++++++..
T Consensus 198 ~~~~~--~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 198 REIPN--LTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp SSCCC--CTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccc--cCCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 76652 4445 67777777777777776667777777777777777777776667777777777777777777777777
Q ss_pred ccCCCCccEEEcCCCcCC
Q psy11648 532 FYFSFKLRILNISHNRLR 549 (584)
Q Consensus 532 ~~~~~~L~~L~L~~n~l~ 549 (584)
|..+++|++|++++|.+.
T Consensus 275 ~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEcCCCCcc
Confidence 777777777777777654
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.4e-28 Score=261.53 Aligned_cols=418 Identities=14% Similarity=0.074 Sum_probs=272.0
Q ss_pred hhhcCCccceeecccccc-ccc--cccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcC
Q psy11648 134 REKLLSNLETLLLRCNKI-TDL--NGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRH 210 (584)
Q Consensus 134 ~l~~~~~L~~L~l~~n~i-~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 210 (584)
.+..+++|++|+++++.. .+. .+..+.... ......+...+++|++|+++++.+++.....+..
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~-------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 134 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV-------------TPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK 134 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC-------------HHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccc-------------hHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHH
Confidence 456788999999988632 111 110110000 0001122336788888888888776654444544
Q ss_pred -CCC-CCEEEcCCCccceeecCCccccccccceEEeecccccCCCC---chhhHhhhcCCCCCEEEccCcccccc----c
Q psy11648 211 -LYN-LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNE---FPYYILNKNLNTLEWLAMDNNNIKNI----R 281 (584)
Q Consensus 211 -~~~-L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~~L~~L~l~~~~l~~~----~ 281 (584)
++. |++|++++|..............+++|++|++++|.+.+.. ++... ..+++|++|++++|.+++. .
T Consensus 135 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA--QHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp HHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH--HHCCCCCEEECTTCCCSSCCHHHH
T ss_pred hccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH--hcCCCccEEEeeccCCCccCHHHH
Confidence 344 88888887752111111223346788888888888765211 33232 6788888888888877622 2
Q ss_pred cccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCccc---ccccccccCCCCCcEEEccCCcCCCcChhh
Q psy11648 282 NYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE---LIESDTFYNLKELNTITLSYNLLKSIKTTS 358 (584)
Q Consensus 282 ~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 358 (584)
+..+..+++|++|++++|.+..++.. +.. +++|+.|+++..... ......+..+++|+.+.++++... ..+..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~ 288 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGF-FKA--AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPIL 288 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHH-HHH--CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHH-Hhh--hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHH
Confidence 23456678888888888887776643 333 788888888753222 122334667788888888775333 33556
Q ss_pred hccCcCCCEEeccCCCCCccCC-ccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC-----------Ccc
Q psy11648 359 FKNLNNMLNIVLSFNQIKYIYP-NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN-----------NYI 426 (584)
Q Consensus 359 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~-----------~~l 426 (584)
+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+. ..++.|+.|++++ +.+
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~--~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA--QYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH--HHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH--HhCCCCCEEEeecCccccccccccCcc
Confidence 6778889999998888664322 335678899999888 333332222221 2356788898883 455
Q ss_pred ccccccccccccCcccEEEccCCCCCCCChhhHHH-hhCCCcEEEcc----CCcccccC-----ccccCCCcccCeeecc
Q psy11648 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQT-FADSLRKLYLD----FNEIKHLD-----ATAFGNLDVLELLSLE 496 (584)
Q Consensus 427 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~~L~~L~l~----~n~l~~~~-----~~~l~~l~~L~~L~l~ 496 (584)
++.........+++|++|+++.+.++......+.. + ++|++|+++ .+.+++.+ +..+.++++|++|+++
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 54333333345799999999888887543344444 5 899999997 45666532 2235678999999998
Q ss_pred Ccc--ccccccccc-CCCCCccEEECCCCCCCCc-CcccccCCCCccEEEcCCCcCC--ccCccccCCCCcceEECCCCC
Q psy11648 497 HNN--IAVVVKRTF-IGMPNLQIIDLSFNEISML-TGEQFYFSFKLRILNISHNRLR--SLPRDVFSNTIIEKLDISYNQ 570 (584)
Q Consensus 497 ~n~--~~~~~~~~~-~~~~~L~~L~ls~n~i~~~-~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~~~~L~~l~l~~n~ 570 (584)
+|. +++.....+ ..+++|++|++++|++++. .+..+.++++|++|++++|.++ +++.....+++|+.|++++|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 654 555443333 4589999999999998863 3344578999999999999987 356556678999999999999
Q ss_pred CCCC
Q psy11648 571 DKIR 574 (584)
Q Consensus 571 l~~~ 574 (584)
++..
T Consensus 525 it~~ 528 (592)
T 3ogk_B 525 ASMT 528 (592)
T ss_dssp CCTT
T ss_pred CCHH
Confidence 8844
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.3e-25 Score=229.77 Aligned_cols=245 Identities=22% Similarity=0.332 Sum_probs=128.7
Q ss_pred EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC
Q psy11648 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372 (584)
Q Consensus 293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 372 (584)
.++.++..++.+|..+ .++++.|++++|.++...+..+..+++|+.|++++|.+.++.+..+..+++|+.|++++
T Consensus 58 ~v~c~~~~l~~iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI-----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp EEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEECCCCcCccCCCC-----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4444444444444332 23445555555555544444455555555555555555554444455555555555555
Q ss_pred CCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCC-ccccccccccccccCcccEEEccCCCC
Q psy11648 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN-YITNLYENDKKQAPIYIKSLDLSNNRI 451 (584)
Q Consensus 373 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~l 451 (584)
|.++...+..+..+++|++|++++|.+...+...|.. .+.|+.|++++| .+..++. ..+..+++|++|++++|.+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR---VPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTT---CTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhc---CCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCcc
Confidence 5555544444555555555555555554433322221 122333333321 1111111 1122345666666666666
Q ss_pred CCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccc
Q psy11648 452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531 (584)
Q Consensus 452 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 531 (584)
+.+|. +..+ ++|++|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|+++++++..
T Consensus 209 ~~~~~--~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 209 KDMPN--LTPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp SSCCC--CTTC-TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred ccccc--cccc-ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 65542 3344 66666666666666666666666666666666666666665666666666666666666666666666
Q ss_pred ccCCCCccEEEcCCCcCC
Q psy11648 532 FYFSFKLRILNISHNRLR 549 (584)
Q Consensus 532 ~~~~~~L~~L~L~~n~l~ 549 (584)
|..+++|++|++++|.+.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 666666666666666544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=226.31 Aligned_cols=254 Identities=19% Similarity=0.234 Sum_probs=141.8
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 345 (584)
+|++|++++|.++++++..+..+++|++|++++|.++.++...+.. +++|++|++++|.++...+..+..+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS--LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC--CCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 4444455444444444444444445555555554444443333332 44444444444444444333344445555555
Q ss_pred ccCCcCCCcCh-hhhccCcCCCEEeccCC-CCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648 346 LSYNLLKSIKT-TSFKNLNNMLNIVLSFN-QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423 (584)
Q Consensus 346 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~ 423 (584)
+++|.+..+.. ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+.+..+..+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---------------- 194 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL---------------- 194 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----------------
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH----------------
Confidence 55554444332 23444555555555554 2444434445555555555555555443322222
Q ss_pred CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCcccc---CCCcccCeeeccCccc
Q psy11648 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAF---GNLDVLELLSLEHNNI 500 (584)
Q Consensus 424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~~ 500 (584)
..+++|++|++++|.++.++...+..+ ++|++|++++|++.+.....+ .....++.++++++.+
T Consensus 195 ------------~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 195 ------------KSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ------------TTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred ------------hccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 224677777777777777665555555 777888888777766543322 2345566777777666
Q ss_pred cc----ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 501 AV----VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 501 ~~----~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
.+ .+|..+..+++|++|++++|+++.+++..|..+++|++|++++|.++.
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 55 245567777888888888888887776666777888888888887764
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=227.34 Aligned_cols=277 Identities=19% Similarity=0.230 Sum_probs=206.1
Q ss_pred cCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCc
Q psy11648 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN 342 (584)
Q Consensus 263 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 342 (584)
.|+.....+.+++.++.++. .+ .++|++|++++|.++.++...+.. +++|++|++++|.++...+..+..+++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQR--CVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhcc--CCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34455556777777776654 22 246777777777777776655554 77777777777777776666677777777
Q ss_pred EEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCC-ccCCCCCCCcEEecCCCC-CCCCChhhhcccccCCCCceEE
Q psy11648 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP-NAFVNLPNLVKLDLQDNK-LKDFNLNVFSNITSKQTPMNLN 420 (584)
Q Consensus 343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~l~~L~ 420 (584)
+|++++|.+++..+..+..+++|++|++++|.+..+.. ..+..+++|++|++++|. +....+..+
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~------------- 170 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF------------- 170 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-------------
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc-------------
Confidence 77777777776666556777777777777777776544 356667777777777663 443322222
Q ss_pred CCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccc
Q psy11648 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500 (584)
Q Consensus 421 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 500 (584)
..+++|++|++++|.++.+.+..+..+ ++|++|++++|++...+...+..+++|++|++++|.+
T Consensus 171 ---------------~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 171 ---------------AGLTFLEELEIDASDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp ---------------TTCCEEEEEEEEETTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred ---------------cCCCCCCEEECCCCCcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 235789999999999988766778888 9999999999999877766667789999999999999
Q ss_pred cccccccc---CCCCCccEEECCCCCCCC----cCcccccCCCCccEEEcCCCcCCccCccc-cCCCCcceEECCCCCCC
Q psy11648 501 AVVVKRTF---IGMPNLQIIDLSFNEISM----LTGEQFYFSFKLRILNISHNRLRSLPRDV-FSNTIIEKLDISYNQDK 572 (584)
Q Consensus 501 ~~~~~~~~---~~~~~L~~L~ls~n~i~~----~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~~~~~L~~l~l~~n~l~ 572 (584)
.+..+..+ ...+.++.++++++.+.+ ..|..+..+++|++|++++|+++.+|..+ ..+++|+.|++++|+++
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 87654332 346788999999998875 23556788999999999999999999986 57899999999999998
Q ss_pred C
Q psy11648 573 I 573 (584)
Q Consensus 573 ~ 573 (584)
.
T Consensus 315 ~ 315 (353)
T 2z80_A 315 C 315 (353)
T ss_dssp C
T ss_pred C
Confidence 3
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.1e-26 Score=217.84 Aligned_cols=223 Identities=23% Similarity=0.311 Sum_probs=116.9
Q ss_pred EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC
Q psy11648 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372 (584)
Q Consensus 293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 372 (584)
+++.+++.++.+|... .++++.|++++|.++...+..+..+++|++|++++|.+.++.+..+..+++|+.|++++
T Consensus 15 ~~~c~~~~l~~ip~~~-----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp EEECCSSCCSSCCTTC-----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEcCcCCcccCCcCC-----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4444444444444322 34455555555555544444445555555555555555554444555555555555555
Q ss_pred CC-CCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCC
Q psy11648 373 NQ-IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451 (584)
Q Consensus 373 ~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l 451 (584)
|. +....+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG----------------------------LAALQYLYLQDNAL 141 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC----------------------------CcCCCEEECCCCcc
Confidence 54 44444455555555555555555555443322221 24455555555555
Q ss_pred CCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccc
Q psy11648 452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531 (584)
Q Consensus 452 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 531 (584)
+.++...+..+ ++|++|++++|++.+.++..+..+++|++|++++|.+.+..+..|..+++|+.|++++|+++++++..
T Consensus 142 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 142 QALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp CCCCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred cccCHhHhccC-CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH
Confidence 54444444444 55555555555555555445555555666666655555555555555566666666666665555555
Q ss_pred ccCCCCccEEEcCCCcCC
Q psy11648 532 FYFSFKLRILNISHNRLR 549 (584)
Q Consensus 532 ~~~~~~L~~L~L~~n~l~ 549 (584)
+..+++|++|++++|.++
T Consensus 221 ~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HTTCTTCCEEECCSSCEE
T ss_pred cccCcccCEEeccCCCcc
Confidence 555556666666665554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.4e-25 Score=217.29 Aligned_cols=246 Identities=22% Similarity=0.353 Sum_probs=110.8
Q ss_pred EEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccc--cccccCCCCCcEEEc
Q psy11648 269 WLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE--SDTFYNLKELNTITL 346 (584)
Q Consensus 269 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l 346 (584)
.++++++.++.++.. + .++|++|++++|.++.++...+.. +++|++|++++|.++... +..+..+++|++|++
T Consensus 11 ~l~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-I--PSSATRLELESNKLQSLPHGVFDK--LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTT--CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred EEEcCCCCcccCCCC-C--CCCCCEEECCCCccCccCHhHhhc--cccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 455555555544431 1 234555555555555555444333 455555555555444221 122233444444444
Q ss_pred cCCcCCCcChhhhccCcCCCEEeccCCCCCccCC-ccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP-NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425 (584)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~ 425 (584)
++|.+... +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+
T Consensus 86 s~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------ 146 (306)
T 2z66_A 86 SFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF------------------ 146 (306)
T ss_dssp CSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT------------------
T ss_pred CCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc------------------
Confidence 44443322 1223334444444444444333322 223333333334333333322211111
Q ss_pred cccccccccccccCcccEEEccCCCCCC-CChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc
Q psy11648 426 ITNLYENDKKQAPIYIKSLDLSNNRIQE-VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504 (584)
Q Consensus 426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 504 (584)
..+++|++|++++|.++. ..+..+..+ ++|++|++++|++.+.++..+..+++|++|++++|.+.+..
T Consensus 147 ----------~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 147 ----------NGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp ----------TTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred ----------ccCcCCCEEECCCCccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 113455555555554442 112334444 55555555555555554445555555555555555555544
Q ss_pred ccccCCCCCccEEECCCCCCCCcCcccccCCC-CccEEEcCCCcCC
Q psy11648 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF-KLRILNISHNRLR 549 (584)
Q Consensus 505 ~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~-~L~~L~L~~n~l~ 549 (584)
+..+..+++|++|++++|++.+..+..+..++ +|++|++++|.++
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 44455555555555555555555555554442 5555555555554
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=221.99 Aligned_cols=247 Identities=26% Similarity=0.354 Sum_probs=173.9
Q ss_pred ceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccE
Q psy11648 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKE 319 (584)
Q Consensus 240 L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~ 319 (584)
.+.++..+..+. .+|..+ .+++++|++++|.++.+.+..+.++++|++|++++|.++.++...+.. +++|++
T Consensus 45 ~~~v~c~~~~l~--~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~--l~~L~~ 116 (440)
T 3zyj_A 45 FSKVICVRKNLR--EVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG--LANLNT 116 (440)
T ss_dssp SCEEECCSCCCS--SCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT--CSSCCE
T ss_pred CCEEEeCCCCcC--cCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC--CccCCE
Confidence 445566555553 555443 245666666666666666556666666666666666666665555544 666666
Q ss_pred EEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCC-CCCccCCccCCCCCCCcEEecCCCC
Q psy11648 320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN-QIKYIYPNAFVNLPNLVKLDLQDNK 398 (584)
Q Consensus 320 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 398 (584)
|++++|.++...+..+..+++|++|++++|.+..+.+..+..+++|+.|++++| .+..+.+..+..+++|++|++++|.
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 666666666555555566666666666666666555555555666666666552 3334434445555566666665555
Q ss_pred CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccc
Q psy11648 399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478 (584)
Q Consensus 399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 478 (584)
++. ++. ...+++|+.|++++|.++.+++..|..+ ++|++|++++|++..
T Consensus 197 l~~---------------------------~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 197 LRE---------------------------IPN---LTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQV 245 (440)
T ss_dssp CSS---------------------------CCC---CTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCE
T ss_pred Ccc---------------------------ccc---cCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeE
Confidence 543 321 2236889999999999998887889888 999999999999999
Q ss_pred cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCC
Q psy11648 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525 (584)
Q Consensus 479 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~ 525 (584)
+.+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999999999999999999999988888999999999999999875
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.5e-24 Score=221.80 Aligned_cols=247 Identities=25% Similarity=0.361 Sum_probs=179.0
Q ss_pred ceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccE
Q psy11648 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKE 319 (584)
Q Consensus 240 L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~ 319 (584)
.+.++.++..+. .+|..+ .+++++|++++|.++.+.+..|.++++|++|++++|.++.++...+.. +++|++
T Consensus 56 ~~~v~c~~~~l~--~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~ 127 (452)
T 3zyi_A 56 FSKVVCTRRGLS--EVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG--LASLNT 127 (452)
T ss_dssp SCEEECCSSCCS--SCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCE
T ss_pred CcEEEECCCCcC--ccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC--cccCCE
Confidence 445666665553 555432 246777777777777666666777777777777777776666555554 666777
Q ss_pred EEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC-CCCCccCCccCCCCCCCcEEecCCCC
Q psy11648 320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF-NQIKYIYPNAFVNLPNLVKLDLQDNK 398 (584)
Q Consensus 320 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~ 398 (584)
|++++|.++...+..+..+++|++|++++|.+..+.+..+..+++|+.|++++ +.+..+.+..+..+++|++|++++|.
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 77776666666555566666666666666666665555566666666666665 33444444455566666666666665
Q ss_pred CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccc
Q psy11648 399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478 (584)
Q Consensus 399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 478 (584)
+++. +. ...+++|+.|++++|.++.+++..+..+ ++|++|++++|++.+
T Consensus 208 l~~~---------------------------~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 208 IKDM---------------------------PN---LTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSL 256 (452)
T ss_dssp CSSC---------------------------CC---CTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCE
T ss_pred cccc---------------------------cc---ccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCce
Confidence 5443 21 2236889999999999999888889998 999999999999999
Q ss_pred cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCC
Q psy11648 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525 (584)
Q Consensus 479 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~ 525 (584)
..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 98899999999999999999999888888999999999999999875
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=9.1e-24 Score=221.15 Aligned_cols=257 Identities=19% Similarity=0.202 Sum_probs=149.7
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 345 (584)
++++|++++|.++.++. .+. ++|++|++++|.++.++.. +++|++|++++|.++.+.. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~~lp~~------l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCCCS-CCC--TTCSEEEECSCCCSCCCCC------CTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcCccCh-hhC--CCCcEEEecCCCCCCCCCc------CCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 35555555555554443 221 4555555555555554441 4555555555555554322 345555555
Q ss_pred ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425 (584)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~ 425 (584)
+++|.++++.. .+++|+.|++++|.++.+. . .+++|++|++++|.+++++. ....++.|++++|.
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQ 172 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCC
Confidence 55555554422 3455566666666555542 2 13556666666666554331 12345666666666
Q ss_pred cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505 (584)
Q Consensus 426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 505 (584)
++.++ ..+++|+.|++++|.++.+|.. . ++|+.|++++|.+..++. .+++|++|++++|.+++. |
T Consensus 173 l~~l~-----~~~~~L~~L~Ls~N~l~~l~~~----~-~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~l-p 237 (622)
T 3g06_A 173 LTSLP-----MLPSGLQELSVSDNQLASLPTL----P-SELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSL-P 237 (622)
T ss_dssp CSCCC-----CCCTTCCEEECCSSCCSCCCCC----C-TTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCC-C
T ss_pred CCCCc-----ccCCCCcEEECCCCCCCCCCCc----c-chhhEEECcCCcccccCC----CCCCCCEEEccCCccCcC-C
Confidence 66554 1246677777777776666531 2 667777777777665542 236677777777777653 2
Q ss_pred cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~ 572 (584)
..+++|+.|++++|+++.+++ .+++|++|++++|+|+.+|..+..+++|+.|++++|+++
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred ---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 445677777777777776554 456777777777777777777777777777777777776
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1e-24 Score=211.09 Aligned_cols=209 Identities=24% Similarity=0.307 Sum_probs=117.7
Q ss_pred cCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCC
Q psy11648 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267 (584)
Q Consensus 188 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L 267 (584)
++|++|+++++.++.+....|.++++|++|++++|.+......+..+..+++|++|++++|.+. .++..+ ..+++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~l~~~~--~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNF--LGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE--EEEEEE--ETCTTC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc--cChhhc--CCCCCC
Confidence 5677777777777766666677777777777777776544222344455566666666666553 444443 456666
Q ss_pred CEEEccCcccccccc-ccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccc-cccccccCCCCCcEEE
Q psy11648 268 EWLAMDNNNIKNIRN-YSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL-IESDTFYNLKELNTIT 345 (584)
Q Consensus 268 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~ 345 (584)
++|++++|.++..+. ..+..+++|++|++++|.+..+....+.. +++|++|++++|.+.+ ..+..+..+++|++|+
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc--CcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 666666666655543 34555566666666666555444444433 5555555555555554 3344455555555555
Q ss_pred ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCC
Q psy11648 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402 (584)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 402 (584)
+++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 555555554444455555555555555555544444444455555555555554443
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=6.3e-25 Score=210.25 Aligned_cols=267 Identities=24% Similarity=0.274 Sum_probs=175.1
Q ss_pred CEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEcc
Q psy11648 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS 347 (584)
Q Consensus 268 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 347 (584)
++++.+++.++.++. ...++|++|++++|.++.++...+.. +++|++|++++|.++...+..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV---GIPAASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCT---TCCTTCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCc---CCCCCceEEEeeCCcCCccCHHHccc--CCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 456666666665543 12356677777777666666555544 6677777777777766666667777777777777
Q ss_pred CCc-CCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcc
Q psy11648 348 YNL-LKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426 (584)
Q Consensus 348 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l 426 (584)
+|. +....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.+...+..
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------- 151 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD----------------- 151 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------
Confidence 775 66666667777788888888888877776777778888888888888777655433322
Q ss_pred ccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccccc
Q psy11648 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKR 506 (584)
Q Consensus 427 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 506 (584)
+++|++|++++|.++.++...+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 152 -----------l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 152 -----------LGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp -----------CTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred -----------CCCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 3566777777777666665566666 7777777777777777666777777788888888777776666
Q ss_pred ccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC-ccCccccCC--CCcceEECCCC
Q psy11648 507 TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SLPRDVFSN--TIIEKLDISYN 569 (584)
Q Consensus 507 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~lp~~l~~~--~~L~~l~l~~n 569 (584)
.+..+++|+.|++++|++....+.. .....++.+..+.+.+. ..|..+... ..++..++.+|
T Consensus 220 ~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 6777788888888887766322211 01123444555555555 456554432 44444445444
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.9e-25 Score=214.84 Aligned_cols=220 Identities=22% Similarity=0.225 Sum_probs=125.3
Q ss_pred ccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCC
Q psy11648 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414 (584)
Q Consensus 335 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 414 (584)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++.+ ..+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~--------~~~ 99 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------VGP 99 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE--------ECT
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc--------CCC
Confidence 3344455555555555555444445555555555555555544322 445555555555555544322 123
Q ss_pred CCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCcccc-CCCcccCee
Q psy11648 415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAF-GNLDVLELL 493 (584)
Q Consensus 415 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L 493 (584)
.++.+++++|.++..+... +++|++|++++|.++.++...+..+ ++|++|++++|.+.+..+..+ ..+++|++|
T Consensus 100 ~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp TCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 4555555555555443322 3556666666666666655555555 666666666666665544444 355666666
Q ss_pred eccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648 494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 494 ~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~ 572 (584)
++++|.++... ....+++|++|++++|+++++++. +..+++|++|++++|+++.+|..+..+++|+.|++++|+++
T Consensus 175 ~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 175 NLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 66666666552 223466666666666666666554 55666666666666666666666666666666666666665
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.5e-26 Score=245.97 Aligned_cols=433 Identities=14% Similarity=0.106 Sum_probs=197.0
Q ss_pred chhhhccccccccccc-ccccc------------------c--ccceeeeecCCceeecCCccccccccceeeEEEecCc
Q psy11648 22 VTKLQHLGTTILKGDQ-LQGIF------------------N--SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNT 80 (584)
Q Consensus 22 l~~l~~Lr~L~l~~~~-l~~l~------------------~--~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n 80 (584)
+.++++|++|+++++. +.++. . ++|++|++++|.+.+.....+...+++|+ +|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~-~L~L~~~ 140 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFK-VLVLSSC 140 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCC-EEEEESC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCc-EEeCCCc
Confidence 4566777888888764 22211 1 56777777776665544444431126677 7777766
Q ss_pred -cccc-ccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccc
Q psy11648 81 -QIEE-LPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNL 158 (584)
Q Consensus 81 -~i~~-l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~ 158 (584)
.++. ....++..+.+|+ +|++++|.+++..+..+..+ ...+++|++|++++|. ..+....
T Consensus 141 ~~~~~~~l~~~~~~~~~L~--~L~L~~~~i~~~~~~~l~~~---------------~~~~~~L~~L~l~~~~-~~~~~~~ 202 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLK--ELDLRESDVDDVSGHWLSHF---------------PDTYTSLVSLNISCLA-SEVSFSA 202 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCC--EEECTTCEEECCCGGGGGGS---------------CTTCCCCCEEECTTCC-SCCCHHH
T ss_pred CCCCHHHHHHHHHhCCCCC--EEeCcCCccCCcchHHHHHH---------------hhcCCcCcEEEecccC-CcCCHHH
Confidence 3442 1222333344477 77777776665444333322 2345667777776664 1221111
Q ss_pred cchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCc-ccccchhhhcCCCCCCEEEcCCCc-------cceeecC
Q psy11648 159 FRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNK-ITDLNGNLFRHLYNLQELSLSFNK-------LQIIELN 230 (584)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-------l~~~~~~ 230 (584)
+ ..+...+++|++|++++|. +.+ .+..+..+++|++|+++.+. +.+.
T Consensus 203 l---------------------~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l--- 257 (594)
T 2p1m_B 203 L---------------------ERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGL--- 257 (594)
T ss_dssp H---------------------HHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHH---
T ss_pred H---------------------HHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHH---
Confidence 1 1122246777777777763 333 44556667777777755432 1111
Q ss_pred CccccccccceEE-eecccccCCCCchhhHhhhcCCCCCEEEccCccccccc-cccccCCCCCcEEEcccCCCcc-cccc
Q psy11648 231 SNVFDVFEKLQLL-EISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIR-NYSLYNLTSLNYINLEYNKISK-IHNN 307 (584)
Q Consensus 231 ~~~~~~l~~L~~L-~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~-i~~~ 307 (584)
+..+..+++|+.+ .+.+... ..++... ..+++|++|++++|.++... ...+..+++|++|++++| +.. ....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~--~~l~~~~--~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVP--AYLPAVY--SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCG--GGGGGGH--HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccch--hhHHHHH--HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 2244555566655 2222211 2233322 34556666666666544221 112345556666666555 221 0001
Q ss_pred cccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhh-ccCcCCCEEeccCCCCCccCCccCC-C
Q psy11648 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSF-KNLNNMLNIVLSFNQIKYIYPNAFV-N 385 (584)
Q Consensus 308 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~ 385 (584)
+... +++|++|++.++.-.+ ....+.+++.....+ ..+++|+.|.+..+.+++.....+. .
T Consensus 333 l~~~--~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 333 LAST--CKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp HHHH--CTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHh--CCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 1111 4455555442210000 001112221111111 1245555555555555433222222 3
Q ss_pred CCCCcEEecC--C----CCCCCCCh-hhhcc-cccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChh
Q psy11648 386 LPNLVKLDLQ--D----NKLKDFNL-NVFSN-ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN 457 (584)
Q Consensus 386 ~~~L~~L~l~--~----~~l~~~~~-~~~~~-~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 457 (584)
+++|+.|+++ + +.+++.+. ..+.. ...++.|+.|++++ .+++.........+++|+.|++++|.+++....
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 5556666555 2 22332211 11110 11223444444433 222221111111245666666666665432222
Q ss_pred hH-HHhhCCCcEEEccCCcccccCcc-ccCCCcccCeeeccCccccccccccc-CCCCCccEEECCCC
Q psy11648 458 FL-QTFADSLRKLYLDFNEIKHLDAT-AFGNLDVLELLSLEHNNIAVVVKRTF-IGMPNLQIIDLSFN 522 (584)
Q Consensus 458 ~~-~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~ls~n 522 (584)
.+ ..+ ++|++|++++|.+++.... ....+++|++|++++|.++......+ ..+|.|+...+..+
T Consensus 475 ~l~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 475 HVLSGC-DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHC-TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHhcC-CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 22 334 6677777776666433222 23346667777776666644322222 34566655555443
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.7e-26 Score=245.64 Aligned_cols=328 Identities=13% Similarity=0.122 Sum_probs=156.5
Q ss_pred hccCCcEEEcCCCcccccchhhh----cCCCCCCEEEcCCCc--cceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648 186 LLSNLETLLLRCNKITDLNGNLF----RHLYNLQELSLSFNK--LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI 259 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~--l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 259 (584)
.+++|++|++++|.+++.....+ ..+++|++|+++++. +... .....+..+++|++|++++|... ..++..+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~~~~-~~l~~~~ 231 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNRAVPL-EKLATLL 231 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH-HHHHHHHHCTTCCEEECCTTSCH-HHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH-HHHHHHHhCCCCcEEecCCCCcH-HHHHHHH
Confidence 56777777777776554332222 355677777777664 1100 01122334577777777776322 2344444
Q ss_pred hhhcCCCCCEEEccCcc-------ccccccccccCCCCCcEE-EcccCCCcccccccccccccCCccEEEcCCCcccccc
Q psy11648 260 LNKNLNTLEWLAMDNNN-------IKNIRNYSLYNLTSLNYI-NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE 331 (584)
Q Consensus 260 ~~~~~~~L~~L~l~~~~-------l~~~~~~~l~~l~~L~~L-~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~ 331 (584)
..+++|++|+++.+. +.++.. .+.++++|+.+ .+.+.....++... .. +++|++|++++|.++...
T Consensus 232 --~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l~~~~-~~--~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 232 --QRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVPAYLPAVY-SV--CSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp --HHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCGGGGGGGH-HH--HTTCCEEECTTCCCCHHH
T ss_pred --hcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccchhhHHHHH-Hh--hCCCCEEEccCCCCCHHH
Confidence 567777777755432 333333 56677777777 34333222232221 12 677777777777755422
Q ss_pred -cccccCCCCCcEEEccCCcCCCc-ChhhhccCcCCCEEeccC---------CCCCccCCccC-CCCCCCcEEecCCCCC
Q psy11648 332 -SDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSF---------NQIKYIYPNAF-VNLPNLVKLDLQDNKL 399 (584)
Q Consensus 332 -~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~l 399 (584)
...+..+++|++|++++| +... .......+++|+.|++.. +.+++.....+ ..+++|++|.+..+.+
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 122456777777777776 3211 112223467777777733 22332211122 2366777776665655
Q ss_pred CCCChhhhcccccCCCCceEECC--C----Ccccccccc----ccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEE
Q psy11648 400 KDFNLNVFSNITSKQTPMNLNLS--N----NYITNLYEN----DKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469 (584)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~L~l~--~----~~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 469 (584)
++.....+.. .+++|+.|+++ + +.++..+.. .....+++|+.|++++ .+++.....+....++|+.|
T Consensus 385 ~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 385 TNAALITIAR--NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CHHHHHHHHH--HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred CHHHHHHHHh--hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence 5433222211 23455555555 2 233321110 0122344555555544 33322112222211455555
Q ss_pred EccCCcccccCcccc-CCCcccCeeeccCccccccccc-ccCCCCCccEEECCCCCCC
Q psy11648 470 YLDFNEIKHLDATAF-GNLDVLELLSLEHNNIAVVVKR-TFIGMPNLQIIDLSFNEIS 525 (584)
Q Consensus 470 ~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~ls~n~i~ 525 (584)
++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++
T Consensus 462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 555555443322222 3345555555555555332221 2233455555555555543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-25 Score=216.96 Aligned_cols=239 Identities=21% Similarity=0.236 Sum_probs=119.9
Q ss_pred hcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCC
Q psy11648 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL 341 (584)
Q Consensus 262 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 341 (584)
..+++|++|++++|.++..++..+..+++|++|++++|.++.++. +.. +++|++|++++|.+++.. ..+.|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~--l~~L~~L~Ls~n~l~~l~-----~~~~L 101 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELL-----VGPSI 101 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETT--CTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhh--cCCCCEEECcCCcccccc-----CCCCc
Confidence 455566666666666666655556666666666666666654443 222 566666666666665442 12566
Q ss_pred cEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEEC
Q psy11648 342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL 421 (584)
Q Consensus 342 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l 421 (584)
++|++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ..+.++.|++
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~L 176 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--SSDTLEHLNL 176 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG--GTTTCCEEEC
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh--ccCcCCEEEC
Confidence 6666666666554322 2455666666666666655555555666666666666665543332211 1223344444
Q ss_pred CCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc
Q psy11648 422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501 (584)
Q Consensus 422 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 501 (584)
++|.++..+... .+++|++|++++|.++.++.. +..+ ++|++|++++|++..++ ..+..+++|++|++++|.+.
T Consensus 177 ~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~-~~~l-~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 177 QYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPE-FQSA-AGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTSCCCEEECCC---CCTTCCEEECCSSCCCEECGG-GGGG-TTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCB
T ss_pred CCCcCccccccc---ccccCCEEECCCCcCCcchhh-hccc-CcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCcc
Confidence 444333332211 134455555555555444432 3333 44444444444444332 22344444444444444444
Q ss_pred -cccccccCCCCCccEEECC
Q psy11648 502 -VVVKRTFIGMPNLQIIDLS 520 (584)
Q Consensus 502 -~~~~~~~~~~~~L~~L~ls 520 (584)
+..+..+..++.|+.++++
T Consensus 251 ~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHHHHHHTCHHHHHHHHH
T ss_pred CcCHHHHHhccccceEEECC
Confidence 2333334444444444443
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.7e-24 Score=208.50 Aligned_cols=245 Identities=17% Similarity=0.151 Sum_probs=162.2
Q ss_pred CCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCE
Q psy11648 288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367 (584)
Q Consensus 288 l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 367 (584)
.+.++.|++++|.++.++..+.. +++|++|++++|.++ ..+..+..+++|++|++++|.+.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~---l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--------------- 140 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--------------- 140 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGG---GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC---------------
T ss_pred ccceeEEEccCCCchhcChhhhh---CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc---------------
Confidence 35666677777666666555433 555555555555555 22333444455555555555444
Q ss_pred EeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEcc
Q psy11648 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447 (584)
Q Consensus 368 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 447 (584)
.+ |..+..+++|++|++++|.+.+..+..+... .+. ..+..+++|++|+++
T Consensus 141 ---------~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------~~~----------~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 141 ---------AL-PASIASLNRLRELSIRACPELTELPEPLAST---------DAS----------GEHQGLVNLQSLRLE 191 (328)
T ss_dssp ---------CC-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEE---------C-C----------CCEEESTTCCEEEEE
T ss_pred ---------cC-cHHHhcCcCCCEEECCCCCCccccChhHhhc---------cch----------hhhccCCCCCEEECc
Confidence 22 3344444455555554443332222111110 000 012236788899999
Q ss_pred CCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527 (584)
Q Consensus 448 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 527 (584)
+|.++.+| ..+..+ ++|++|++++|++.++++ .+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.
T Consensus 192 ~n~l~~lp-~~l~~l-~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 192 WTGIRSLP-ASIANL-QNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp EECCCCCC-GGGGGC-TTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred CCCcCcch-HhhcCC-CCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 98888887 447777 899999999999887655 578889999999999999888888899999999999999998888
Q ss_pred CcccccCCCCccEEEcCCCcCC-ccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648 528 TGEQFYFSFKLRILNISHNRLR-SLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP 583 (584)
Q Consensus 528 ~~~~~~~~~~L~~L~L~~n~l~-~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~ 583 (584)
.|..+..+++|++|++++|.+. .+|..+..+++|+.+++..+.+..++....-..|
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~~~~~~p 325 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----------
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhhhccccc
Confidence 8888889999999999998654 7999999999999999998888877766555444
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2e-23 Score=203.29 Aligned_cols=240 Identities=13% Similarity=0.105 Sum_probs=191.3
Q ss_pred hcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCC
Q psy11648 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL 341 (584)
Q Consensus 262 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 341 (584)
...+.+++|++++|.++.++. .+..+++|++|++++|.++.+|..+.. +++|++|++++|.++.+ +..+..+++|
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~---l~~L~~L~Ls~n~l~~l-p~~l~~l~~L 152 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQ---FAGLETLTLARNPLRAL-PASIASLNRL 152 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCCCCSCGGG---GTTCSEEEEESCCCCCC-CGGGGGCTTC
T ss_pred ccccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCccchhHHHhc---cCCCCEEECCCCccccC-cHHHhcCcCC
Confidence 356889999999999997765 688899999999999999988776544 89999999999999954 6678889999
Q ss_pred cEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEEC
Q psy11648 342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL 421 (584)
Q Consensus 342 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l 421 (584)
++|++++|.+.+..+..+.. .. .+..+..+++|++|++++|.++.++. .+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~~lp~-~l-------------- 202 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIRSLPA-SI-------------- 202 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCCCG-GG--------------
T ss_pred CEEECCCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcCcchH-hh--------------
Confidence 99999998776665544332 11 12234556777777777777664321 12
Q ss_pred CCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc
Q psy11648 422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501 (584)
Q Consensus 422 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 501 (584)
..+++|++|++++|.++.+|. .+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 203 --------------~~l~~L~~L~L~~N~l~~l~~-~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 203 --------------ANLQNLKSLKIRNSPLSALGP-AIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp --------------GGCTTCCEEEEESSCCCCCCG-GGGGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred --------------cCCCCCCEEEccCCCCCcCch-hhccC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 124778888888888888774 46677 88999999998888887888899999999999999998
Q ss_pred cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552 (584)
Q Consensus 502 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp 552 (584)
+.+|..+..+++|++|++++|++.+..|..+..+++|+.+++..+.+..++
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 898988999999999999999999888899999999999999988766554
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1e-22 Score=213.26 Aligned_cols=176 Identities=19% Similarity=0.160 Sum_probs=104.3
Q ss_pred cCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCC
Q psy11648 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267 (584)
Q Consensus 188 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L 267 (584)
.+++.|+++++.++.++.. +. ++|++|++++|.+..+ +. .+++|++|++++|.+. .+|. .+++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~-l~--~~L~~L~L~~N~l~~l---p~---~l~~L~~L~Ls~N~l~--~lp~-----~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSL---PA---LPPELRTLEVSGNQLT--SLPV-----LPPGL 103 (622)
T ss_dssp HCCCEEECCSSCCSCCCSC-CC--TTCSEEEECSCCCSCC---CC---CCTTCCEEEECSCCCS--CCCC-----CCTTC
T ss_pred CCCcEEEecCCCcCccChh-hC--CCCcEEEecCCCCCCC---CC---cCCCCCEEEcCCCcCC--cCCC-----CCCCC
Confidence 4588888888888755442 32 6788888888877654 33 4567777777777664 4553 45667
Q ss_pred CEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEcc
Q psy11648 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS 347 (584)
Q Consensus 268 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 347 (584)
++|++++|.++.++. .+++|++|++++|+++.++.. +++|++|++++|.++.+.. .+++|+.|+++
T Consensus 104 ~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~------l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~ 169 (622)
T 3g06_A 104 LELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL------PPGLQELSVSDNQLASLPA----LPSELCKLWAY 169 (622)
T ss_dssp CEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred CEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC------CCCCCEEECcCCcCCCcCC----ccCCCCEEECC
Confidence 777777776666543 356677777777766665542 4566666666666654321 23455566666
Q ss_pred CCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCC
Q psy11648 348 YNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD 401 (584)
Q Consensus 348 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 401 (584)
+|.++++. ..+++|+.|++++|.++++. . ..++|+.|++++|.++.
T Consensus 170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 170 NNQLTSLP----MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS
T ss_pred CCCCCCCc----ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccc
Confidence 66555432 23455555555555555431 1 12455555555555443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=9e-24 Score=217.00 Aligned_cols=215 Identities=22% Similarity=0.243 Sum_probs=121.1
Q ss_pred CCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceE
Q psy11648 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL 419 (584)
Q Consensus 340 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L 419 (584)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++.+ ..+.++.|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--------~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------VGPSIETL 104 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE--------ECTTCCEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC--------CCCCcCEE
Confidence 44444444444444444444444555555555554444322 444555555555555444322 11344555
Q ss_pred ECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccC-CCcccCeeeccCc
Q psy11648 420 NLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG-NLDVLELLSLEHN 498 (584)
Q Consensus 420 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n 498 (584)
++++|.++..+... +++|+.|++++|.++.+++..+..+ ++|+.|++++|.+.+.++..+. .+++|++|++++|
T Consensus 105 ~L~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 105 HAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp ECCSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred ECcCCcCCCCCccc----cCCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 55555555443321 3556666666666666555555555 6666666666666665554443 5666666666666
Q ss_pred ccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648 499 NIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 499 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~ 572 (584)
.+++..+ +..+++|+.|++++|.++++++. +..+++|+.|++++|.++++|..+..+++|+.|++++|+++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 6665522 33466666666666666666554 55666666666666666666666666666666666666665
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=4.7e-25 Score=213.73 Aligned_cols=106 Identities=21% Similarity=0.169 Sum_probs=69.5
Q ss_pred CCCcEEEccCCcccc---cCccccCCCcccCeeeccCcccccccc-cccCCCCCccEEECCCCCCCCcCcccccCCCCcc
Q psy11648 464 DSLRKLYLDFNEIKH---LDATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLR 539 (584)
Q Consensus 464 ~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~ 539 (584)
++|++|++++|++.+ .....+..+++|++|++++|.+.+..+ ..+..+++|++|++++|+++.++.. +. ++|+
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~ 277 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLS 277 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS-CC--SEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh-cc--CCce
Confidence 445555555554442 122233455666777777776666543 3455667788888888887765443 32 7888
Q ss_pred EEEcCCCcCCccCccccCCCCcceEECCCCCCCC
Q psy11648 540 ILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKI 573 (584)
Q Consensus 540 ~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~ 573 (584)
+|++++|+|+.+|. +..+++|+.|++++|+++.
T Consensus 278 ~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 278 VLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888875 7777888888888888874
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.5e-22 Score=190.10 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=86.5
Q ss_pred CccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecC
Q psy11648 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395 (584)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 395 (584)
++++|++++|.++...+..+..+++|++|++++|.+.++.+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444443344444555555555555444444444445555555555555554444445555555555555
Q ss_pred CCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCc----EEEc
Q psy11648 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLR----KLYL 471 (584)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~----~L~l 471 (584)
+|.+.+.....+.. .+.|+.|++++|.++.......+..+++|++|++++|.++.++...+..+ ++|+ +|++
T Consensus 109 ~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~l 184 (276)
T 2z62_A 109 ETNLASLENFPIGH---LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDL 184 (276)
T ss_dssp TSCCCCSTTCCCTT---CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEEC
T ss_pred CCCccccCchhccc---CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeec
Confidence 55544433221111 11222222222222211111111123455555555555554444444444 4444 4444
Q ss_pred cCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCC
Q psy11648 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524 (584)
Q Consensus 472 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i 524 (584)
++|.+.++++..+.. .+|++|++++|.++...+..|..+++|++|++++|++
T Consensus 185 s~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 185 SLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 444444443333322 2344444444444433333344444444444444443
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3e-22 Score=191.24 Aligned_cols=203 Identities=20% Similarity=0.241 Sum_probs=152.7
Q ss_pred ccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCC
Q psy11648 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414 (584)
Q Consensus 335 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 414 (584)
+..++++++++++++.++.+... + .+.++.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------- 68 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-------------- 68 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--------------
T ss_pred ccccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC--------------
Confidence 34455556666665555544221 1 145555555555555554455555555555555555544
Q ss_pred CCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeee
Q psy11648 415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS 494 (584)
Q Consensus 415 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 494 (584)
.++.. ..+++|++|++++|.++.+| ..+..+ ++|++|++++|++..+++..|.++++|++|+
T Consensus 69 -------------~~~~~---~~l~~L~~L~Ls~N~l~~l~-~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 69 -------------KLQVD---GTLPVLGTLDLSHNQLQSLP-LLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp -------------EEECC---SCCTTCCEEECCSSCCSSCC-CCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred -------------cccCC---CCCCcCCEEECCCCcCCcCc-hhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 33222 23578888888888888877 355666 8899999999999888888889999999999
Q ss_pred ccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 495 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~ 572 (584)
+++|.+....+..|..+++|+.|++++|+++.+++..|..+++|++|++++|+++.+|..++..++|+.+++++|++.
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 999999888777888999999999999999998888888899999999999999999999999999999999999886
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=5.7e-22 Score=187.79 Aligned_cols=111 Identities=23% Similarity=0.386 Sum_probs=60.7
Q ss_pred cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII 517 (584)
Q Consensus 438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 517 (584)
+++|++|++++|.++.++...+..+ ++|++|++++|.+..+++..|..+++|++|++++|.+....+..|..+++|++|
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCccCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 3455555555555555554445554 555555555555555554445555555555555555555444445555555555
Q ss_pred ECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
++++|+++++++..|..+++|++|++++|.+.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 55555555555555555555555555555544
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5e-24 Score=206.48 Aligned_cols=185 Identities=16% Similarity=0.114 Sum_probs=134.4
Q ss_pred cCCCCCcEEEccCCcCCCcChhhhccC-----cCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhccc
Q psy11648 336 YNLKELNTITLSYNLLKSIKTTSFKNL-----NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNI 410 (584)
Q Consensus 336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 410 (584)
..+++|++|++++|.+++. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+... ..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~--- 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-LI--- 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-HH---
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-HH---
Confidence 4556666666666666655 4444444 777888888888777766777788888888888887543210 00
Q ss_pred ccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCC---hhhHHHhhCCCcEEEccCCcccccCc-cccCC
Q psy11648 411 TSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP---VNFLQTFADSLRKLYLDFNEIKHLDA-TAFGN 486 (584)
Q Consensus 411 ~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~ 486 (584)
....+..+++|++|++++|.++.++ ...+..+ ++|++|++++|++.+..+ ..+..
T Consensus 193 --------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 193 --------------------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp --------------------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCC
T ss_pred --------------------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchhhhhh
Confidence 0011123578888888888887443 3445566 899999999999987653 45667
Q ss_pred CcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy11648 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551 (584)
Q Consensus 487 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l 551 (584)
+++|++|++++|.++ .+|..+. ++|++|++++|++++++ . +..+++|++|++++|+++..
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTCC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCCC
Confidence 899999999999998 5555554 89999999999999884 4 88899999999999998753
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.2e-23 Score=210.76 Aligned_cols=235 Identities=20% Similarity=0.244 Sum_probs=125.7
Q ss_pred CCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEE
Q psy11648 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI 344 (584)
Q Consensus 265 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 344 (584)
++|++|++++|.+++.++..+..+++|++|++++|.++..++ +.. +++|++|++++|.+++..+ .+.|+.|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 378888888888888777778888888888888888775554 333 6777777777777765432 2566666
Q ss_pred EccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCC
Q psy11648 345 TLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424 (584)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~ 424 (584)
++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---------------- 165 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA---------------- 165 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----------------
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh----------------
Confidence 6666666554322 234455555555555444444444444444444444444432222111
Q ss_pred ccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc
Q psy11648 425 YITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504 (584)
Q Consensus 425 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 504 (584)
..+++|+.|++++|.++.++... .+ ++|+.|++++|.+.++++. +..+++|+.|++++|.+.+ +
T Consensus 166 -----------~~l~~L~~L~Ls~N~l~~~~~~~--~l-~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 166 -----------ASSDTLEHLNLQYNFIYDVKGQV--VF-AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp -----------GGTTTCCEEECTTSCCCEEECCC--CC-TTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-E
T ss_pred -----------hhCCcccEEecCCCccccccccc--cC-CCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-c
Confidence 11345555555555555443211 12 4555555555555544332 4444555555555555543 2
Q ss_pred ccccCCCCCccEEECCCCCCC-CcCcccccCCCCccEEEc
Q psy11648 505 KRTFIGMPNLQIIDLSFNEIS-MLTGEQFYFSFKLRILNI 543 (584)
Q Consensus 505 ~~~~~~~~~L~~L~ls~n~i~-~~~~~~~~~~~~L~~L~L 543 (584)
|..+..+++|+.|++++|.+. +..|..+..++.|+.+++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 333444555555555555544 333333444444444444
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.2e-21 Score=183.72 Aligned_cols=202 Identities=27% Similarity=0.401 Sum_probs=122.6
Q ss_pred CCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEe
Q psy11648 290 SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV 369 (584)
Q Consensus 290 ~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 369 (584)
..+.++++++.++.+|..+ .+.++.|++++|.++...+..+..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCC-----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 3556666666666655432 34566666666666655555555566666666666655555444455555566666
Q ss_pred ccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCC
Q psy11648 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNN 449 (584)
Q Consensus 370 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 449 (584)
+++|.+....+..+..+++|++|++++|.+++.++..+. .+++|++|++++|
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------------------~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----------------------------SLTKLTYLSLGYN 143 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT----------------------------TCTTCCEEECCSS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC----------------------------cCcCCCEEECCCC
Confidence 665555555444555555555555555555544332221 2456677777777
Q ss_pred CCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCC
Q psy11648 450 RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525 (584)
Q Consensus 450 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~ 525 (584)
.++.++...+..+ ++|++|++++|++..+++..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 144 ~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 144 ELQSLPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCccCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 7666666556666 67777777777776666666666777777777777776665556666777777777777654
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=5.5e-21 Score=181.84 Aligned_cols=210 Identities=22% Similarity=0.338 Sum_probs=162.9
Q ss_pred CCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEE
Q psy11648 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI 344 (584)
Q Consensus 265 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 344 (584)
+++++|++++|.++..++..+..+++|++|++++|.++.++...+.. +++|++|++++|.++...+..+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC--CcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 46888888888888877767888888888888888888777766655 7888888888888887776777778888888
Q ss_pred EccCCcCCCcChhhhccCcCCCEEeccCCCCCcc-CCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648 345 TLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI-YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423 (584)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~ 423 (584)
++++|.+.+..+..+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.+++.....+..+.
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------ 173 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------------ 173 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH------------
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh------------
Confidence 8888887776665677777888888888877764 366777777888888888777766554443321
Q ss_pred CccccccccccccccCccc-EEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccc
Q psy11648 424 NYITNLYENDKKQAPIYIK-SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502 (584)
Q Consensus 424 ~~l~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 502 (584)
..+.+. .+++++|.++.++...+.. .+|++|++++|++.+.++..|..+++|++|++++|.+.+
T Consensus 174 -------------~L~~l~l~L~ls~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 174 -------------QMPLLNLSLDLSLNPMNFIQPGAFKE--IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp -------------TCTTCCEEEECCSSCCCEECTTSSCS--CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred -------------hccccceeeecCCCcccccCccccCC--CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 122233 7999999999888666654 589999999999999988888999999999999999875
Q ss_pred c
Q psy11648 503 V 503 (584)
Q Consensus 503 ~ 503 (584)
.
T Consensus 239 ~ 239 (276)
T 2z62_A 239 S 239 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2.1e-21 Score=183.96 Aligned_cols=206 Identities=24% Similarity=0.323 Sum_probs=131.2
Q ss_pred cCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEe
Q psy11648 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393 (584)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 393 (584)
+++|+.|++.++.++... .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 555666666666555432 244555666666666655543 2445555555555555555555444455555555555
Q ss_pred cCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccC
Q psy11648 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF 473 (584)
Q Consensus 394 l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 473 (584)
+++|.+++.++..+ ..+++|++|++++|.++.++...+..+ ++|++|++++
T Consensus 116 L~~n~l~~~~~~~~----------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~ 166 (272)
T 3rfs_A 116 LVENQLQSLPDGVF----------------------------DKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSY 166 (272)
T ss_dssp CTTSCCCCCCTTTT----------------------------TTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCS
T ss_pred CCCCcCCccCHHHh----------------------------ccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCC
Confidence 55555544333222 124677777777777777776666666 7778888887
Q ss_pred CcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC-ccC
Q psy11648 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SLP 552 (584)
Q Consensus 474 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~lp 552 (584)
|++.+.++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .++.|+.|++++|+++ .+|
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence 77777776667777777888887777777766667777777777777776643 3567777777777776 467
Q ss_pred ccccCCC
Q psy11648 553 RDVFSNT 559 (584)
Q Consensus 553 ~~l~~~~ 559 (584)
.++..++
T Consensus 240 ~~~~~~~ 246 (272)
T 3rfs_A 240 NSAGSVA 246 (272)
T ss_dssp CTTSCBC
T ss_pred CcccccC
Confidence 6666553
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.1e-21 Score=180.48 Aligned_cols=125 Identities=21% Similarity=0.234 Sum_probs=76.0
Q ss_pred CcccEEEccCCCCCCCChhhHHHhhCCCc---EEEccCC-cccccCccccCCCcccC-eeeccCcccccccccccCCCCC
Q psy11648 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLR---KLYLDFN-EIKHLDATAFGNLDVLE-LLSLEHNNIAVVVKRTFIGMPN 513 (584)
Q Consensus 439 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~ 513 (584)
++|++|++++|.++.+|. +..+ ++|+ +|++++| .+..+++..|.++++|+ +|++++|.++...+..|.. ++
T Consensus 105 ~~L~~L~l~~n~l~~lp~--~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~ 180 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPD--LTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK 180 (239)
T ss_dssp TTCCEEEEEEECCCSCCC--CTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE
T ss_pred CCCCEEeCCCCCCccccc--cccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC
Confidence 444444444444444442 3333 4444 5666665 55555555566666666 6666666666443334444 67
Q ss_pred ccEEECCCCC-CCCcCcccccCC-CCccEEEcCCCcCCccCccccCCCCcceEECCCC
Q psy11648 514 LQIIDLSFNE-ISMLTGEQFYFS-FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569 (584)
Q Consensus 514 L~~L~ls~n~-i~~~~~~~~~~~-~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n 569 (584)
|++|++++|+ ++++++..|..+ ++|++|++++|+++.+|.. .+++|+.|+++++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 7777777774 776666667777 7777777777777777655 4567777777665
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.2e-21 Score=185.69 Aligned_cols=214 Identities=23% Similarity=0.344 Sum_probs=144.9
Q ss_pred hhccccccccccccccccc----ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceee
Q psy11648 25 LQHLGTTILKGDQLQGIFN----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT 100 (584)
Q Consensus 25 l~~Lr~L~l~~~~l~~l~~----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~ 100 (584)
++.+..+++..+.+.++.. ++|+.|++++|.+.++. .+..+ ++|+ +|++++|.+..++ .+..+.+|+ +
T Consensus 18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l-~~L~-~L~l~~n~l~~~~--~l~~l~~L~--~ 89 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVR-YLALGGNKLHDIS--ALKELTNLT--Y 89 (272)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCC-EEECTTSCCCCCG--GGTTCTTCC--E
T ss_pred HHHHHHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccC-CCCc-EEECCCCCCCCch--hhcCCCCCC--E
Confidence 3444444777776666444 77888888888777653 35565 7788 8888888777654 344444588 8
Q ss_pred eecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCccc
Q psy11648 101 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180 (584)
Q Consensus 101 L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 180 (584)
|++++|.+++..+. .+.++++|++|++++|.+++..+.
T Consensus 90 L~L~~n~l~~~~~~-------------------~~~~l~~L~~L~L~~n~l~~~~~~----------------------- 127 (272)
T 3rfs_A 90 LILTGNQLQSLPNG-------------------VFDKLTNLKELVLVENQLQSLPDG----------------------- 127 (272)
T ss_dssp EECTTSCCCCCCTT-------------------TTTTCTTCCEEECTTSCCCCCCTT-----------------------
T ss_pred EECCCCccCccChh-------------------HhcCCcCCCEEECCCCcCCccCHH-----------------------
Confidence 88888877654332 234557788888888877766432
Q ss_pred chhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHh
Q psy11648 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYIL 260 (584)
Q Consensus 181 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~ 260 (584)
.+. .+++|++|++++|.++...+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+. .++...+
T Consensus 128 -~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~ 201 (272)
T 3rfs_A 128 -VFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL--PEGVFDKLTQLKDLRLYQNQLK--SVPDGVF 201 (272)
T ss_dssp -TTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCS--CCCTTTT
T ss_pred -Hhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc--CHHHhcCCccCCEEECCCCcCC--ccCHHHH
Confidence 222 567788888888877777666677777888888888777765 5556677778888888887775 4444444
Q ss_pred hhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCc
Q psy11648 261 NKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302 (584)
Q Consensus 261 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 302 (584)
..+++|++|++++|.+. +.++.|+.++++.|.++
T Consensus 202 -~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 202 -DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp -TTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTG
T ss_pred -hCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCC
Confidence 67778888888887654 33556777777777666
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=3.7e-22 Score=197.65 Aligned_cols=254 Identities=19% Similarity=0.176 Sum_probs=143.6
Q ss_pred EEcccCCCcccccccccccccCCccEEEcCCCccccccc----ccccCCC-CCcEEEccCCcCCCcChhhhccC-----c
Q psy11648 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES----DTFYNLK-ELNTITLSYNLLKSIKTTSFKNL-----N 363 (584)
Q Consensus 294 L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~ 363 (584)
+.++.+.+++..+.+... .++|++|++++|.++...+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI--PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTS--CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhC--CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 456677776555544443 4558888888888777655 5566666 78888888887776655555543 7
Q ss_pred CCCEEeccCCCCCccCCcc----CCCC-CCCcEEecCCCCCCCCChhhhccc-cc-CCCCceEECCCCcccccccccc--
Q psy11648 364 NMLNIVLSFNQIKYIYPNA----FVNL-PNLVKLDLQDNKLKDFNLNVFSNI-TS-KQTPMNLNLSNNYITNLYENDK-- 434 (584)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~~~~~~-~~-~~~l~~L~l~~~~l~~~~~~~~-- 434 (584)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+++.....+... .. ...++.|++++|.+++......
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 7788888877777654443 3333 677788888777777666554332 11 2356666666666654332211
Q ss_pred -cccc-CcccEEEccCCCCCCCChhhHH----HhhCCCcEEEccCCcccccCc----cccCC-CcccCeeeccCcccccc
Q psy11648 435 -KQAP-IYIKSLDLSNNRIQEVPVNFLQ----TFADSLRKLYLDFNEIKHLDA----TAFGN-LDVLELLSLEHNNIAVV 503 (584)
Q Consensus 435 -~~~~-~~L~~L~l~~~~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~----~~l~~-l~~L~~L~l~~n~~~~~ 503 (584)
.... ++|++|++++|.++......+. .++++|++|++++|.+..... ..+.. .++|++|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 0112 2566666666666544433222 221356666666666554221 12222 24566666666665543
Q ss_pred cc----cccCCCCCccEEECCCCCCCCcCcc-------cccCCCCccEEEcCCCcCC
Q psy11648 504 VK----RTFIGMPNLQIIDLSFNEISMLTGE-------QFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 504 ~~----~~~~~~~~L~~L~ls~n~i~~~~~~-------~~~~~~~L~~L~L~~n~l~ 549 (584)
.+ ..+..+++|++|++++|.+.++.+. .+..+++|++|++++|++.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 22 2345556666666666654333222 3445555666666666555
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.9e-20 Score=177.41 Aligned_cols=110 Identities=23% Similarity=0.277 Sum_probs=53.5
Q ss_pred cCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCC
Q psy11648 286 YNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365 (584)
Q Consensus 286 ~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 365 (584)
..++++++++++++.++.+|..+ .+.++.|++++|.++...+..+..+++|++|++++|.++++... ..+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccCCccEEECCCCCCCcCCCCC-----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 34444555555555555444432 23445555555555544444455555555555555555443221 344555
Q ss_pred CEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCC
Q psy11648 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403 (584)
Q Consensus 366 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 403 (584)
+.|++++|.+..+ |..+..+++|++|++++|.+++.+
T Consensus 80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~ 116 (290)
T 1p9a_G 80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLP 116 (290)
T ss_dssp CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCC
T ss_pred CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccC
Confidence 5555555555433 334445555555555555555443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.1e-21 Score=177.84 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=152.5
Q ss_pred cCCccEEEcCCCcccccccccccCCCCCcEEEccCCc-CCCcChhhhccCcCCCEEeccC-CCCCccCCccCCCCCCCcE
Q psy11648 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNL-LKSIKTTSFKNLNNMLNIVLSF-NQIKYIYPNAFVNLPNLVK 391 (584)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~ 391 (584)
.++++.|++++|.++...+..+..+++|++|++++|. ++.+.+..+..+++|+.|++++ |.++.+.+..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4567777777777776666667777777777777775 7666666677777888888877 7777776667777788888
Q ss_pred EecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCccc---EEEccCC-CCCCCChhhHHHhhCCCc
Q psy11648 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK---SLDLSNN-RIQEVPVNFLQTFADSLR 467 (584)
Q Consensus 392 L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~~L~ 467 (584)
|++++|.+++.+. +.. +++|+ +|++++| .++.++...|..+ ++|+
T Consensus 110 L~l~~n~l~~lp~--~~~----------------------------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~ 158 (239)
T 2xwt_C 110 LGIFNTGLKMFPD--LTK----------------------------VYSTDIFFILEITDNPYMTSIPVNAFQGL-CNET 158 (239)
T ss_dssp EEEEEECCCSCCC--CTT----------------------------CCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSE
T ss_pred EeCCCCCCccccc--ccc----------------------------ccccccccEEECCCCcchhhcCcccccch-hcce
Confidence 8888777765432 211 34444 8888888 8888887778887 8899
Q ss_pred -EEEccCCcccccCccccCCCcccCeeeccCcc-cccccccccCCC-CCccEEECCCCCCCCcCcccccCCCCccEEEcC
Q psy11648 468 -KLYLDFNEIKHLDATAFGNLDVLELLSLEHNN-IAVVVKRTFIGM-PNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544 (584)
Q Consensus 468 -~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~ 544 (584)
+|++++|++..++...|.. ++|++|++++|. ++...+..|..+ ++|+.|++++|+++++++. .+++|++|+++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 9999999988777777766 889999999994 887777788899 9999999999999988765 46789999998
Q ss_pred CC
Q psy11648 545 HN 546 (584)
Q Consensus 545 ~n 546 (584)
++
T Consensus 235 ~~ 236 (239)
T 2xwt_C 235 NT 236 (239)
T ss_dssp TC
T ss_pred Cc
Confidence 76
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=8.1e-21 Score=183.24 Aligned_cols=199 Identities=24% Similarity=0.343 Sum_probs=142.9
Q ss_pred cCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCC
Q psy11648 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT 415 (584)
Q Consensus 336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 415 (584)
..+++|++|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.+ .+..++.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-----AIAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----GGTTCTT
T ss_pred HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-----hhcCCCC
Confidence 45678889999988887653 56778889999999888887743 788888999999988887652 2334567
Q ss_pred CceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648 416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL 495 (584)
Q Consensus 416 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 495 (584)
|+.|++++|.++..+. ...+++|++|++++|.++.++. +..+ ++|++|++++|++.+.++ +..+++|++|++
T Consensus 109 L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCCChh--hcCCCCCCEEEC
Confidence 7777777777776543 3446777777777777776653 5555 777777777777766544 667777777777
Q ss_pred cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccc
Q psy11648 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV 555 (584)
Q Consensus 496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l 555 (584)
++|.+.+..+ +..+++|++|++++|++.++++ +..+++|++|++++|+++..|...
T Consensus 181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred CCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCeee
Confidence 7777766543 6677777777777777776653 666777777777777777665443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.1e-21 Score=194.21 Aligned_cols=260 Identities=18% Similarity=0.232 Sum_probs=153.9
Q ss_pred EeecccccCCCCchhhHhhhcCCCCCEEEccCcccccccc----ccccCCC-CCcEEEcccCCCcccccccccc--cc-c
Q psy11648 243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRN----YSLYNLT-SLNYINLEYNKISKIHNNLFHF--NI-H 314 (584)
Q Consensus 243 L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~~~l~~i~~~~~~~--~~-~ 314 (584)
..++.+.+. +.+|... ...++|++|++++|.++.... .++..++ +|++|++++|.++......+.. .. .
T Consensus 3 ~~ls~n~~~-~~~~~~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGS-NPVEEFT--SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTC-CHHHHHH--TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccch-HHHHHHH--hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 456666665 4444443 455568888888887776665 5566677 7778888777776544332221 00 1
Q ss_pred CCccEEEcCCCccccccccc----ccCC-CCCcEEEccCCcCCCcChhhhc----c-CcCCCEEeccCCCCCccCCc---
Q psy11648 315 KRLKEIRLSNNYLELIESDT----FYNL-KELNTITLSYNLLKSIKTTSFK----N-LNNMLNIVLSFNQIKYIYPN--- 381 (584)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~~~--- 381 (584)
++|++|++++|.++...+.. +..+ ++|++|++++|.+++.....+. . .++|++|++++|.+++....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 55666666666655433321 2222 4555555555555444332222 1 13455555555544432211
Q ss_pred -cCCCCC-CCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccccccccccccc-CcccEEEccCCCCCCCChh-
Q psy11648 382 -AFVNLP-NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP-IYIKSLDLSNNRIQEVPVN- 457 (584)
Q Consensus 382 -~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~- 457 (584)
.+...+ +|++|++++|.+++.....+... ...+ ++|++|++++|.++.....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~------------------------l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKF------------------------LASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHH------------------------HHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHH------------------------HHhCCCCCCEEECCCCCCChhHHHH
Confidence 112222 44444444444444333222211 1123 5899999999999874332
Q ss_pred ---hHHHhhCCCcEEEccCCcccccCc----cccCCCcccCeeeccCcccccc-------cccccCCCCCccEEECCCCC
Q psy11648 458 ---FLQTFADSLRKLYLDFNEIKHLDA----TAFGNLDVLELLSLEHNNIAVV-------VKRTFIGMPNLQIIDLSFNE 523 (584)
Q Consensus 458 ---~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~-------~~~~~~~~~~L~~L~ls~n~ 523 (584)
.+...+++|++|++++|.+.+... ..+..+++|++|++++|.+... ++..+..+++|+.|++++|+
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 333333699999999999987654 3457789999999999984432 33467889999999999999
Q ss_pred CCCcCc
Q psy11648 524 ISMLTG 529 (584)
Q Consensus 524 i~~~~~ 529 (584)
+.+..+
T Consensus 296 l~~~~~ 301 (362)
T 3goz_A 296 IHPSHS 301 (362)
T ss_dssp CCGGGC
T ss_pred CCCcch
Confidence 886533
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=187.52 Aligned_cols=210 Identities=18% Similarity=0.117 Sum_probs=115.9
Q ss_pred cCCccEEEcCCCcccccccccc--cCCCCCcEEEccCCcCCCcCh----hhhccCcCCCEEeccCCCCCccCCccCCCCC
Q psy11648 314 HKRLKEIRLSNNYLELIESDTF--YNLKELNTITLSYNLLKSIKT----TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387 (584)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 387 (584)
.++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456666666666665555544 556666666666666554322 2223455666666666666555555555556
Q ss_pred CCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCc
Q psy11648 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLR 467 (584)
Q Consensus 388 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 467 (584)
+|++|++++|.+.+... + +.......+++|++|++++|.++.++....
T Consensus 170 ~L~~L~Ls~N~l~~~~~--~----------------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-------- 217 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERG--L----------------------MAALCPHKFPAIQNLALRNTGMETPTGVCA-------- 217 (310)
T ss_dssp TCCEEECCSCTTCHHHH--H----------------------HTTSCTTSSCCCCSCBCCSSCCCCHHHHHH--------
T ss_pred CCCEEECCCCCCccchh--h----------------------hHHHhhhcCCCCCEEECCCCCCCchHHHHH--------
Confidence 66666666555432100 0 000111124556666666666554432100
Q ss_pred EEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCC---CCccEEECCCCCCCCcCcccccCCCCccEEEcC
Q psy11648 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM---PNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544 (584)
Q Consensus 468 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~ 544 (584)
..+..+++|++|++++|.+.+..|..+..+ ++|++|++++|+++.++.. +. ++|++|+++
T Consensus 218 --------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~--~~L~~L~Ls 280 (310)
T 4glp_A 218 --------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-LP--AKLRVLDLS 280 (310)
T ss_dssp --------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-CC--SCCSCEECC
T ss_pred --------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-hc--CCCCEEECC
Confidence 012344555555555555555544444444 5777777777777755433 32 677888888
Q ss_pred CCcCCccCccccCCCCcceEECCCCCCCC
Q psy11648 545 HNRLRSLPRDVFSNTIIEKLDISYNQDKI 573 (584)
Q Consensus 545 ~n~l~~lp~~l~~~~~L~~l~l~~n~l~~ 573 (584)
+|+|+++|. ...+++|+.|++++|+++.
T Consensus 281 ~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 888777764 5666788888888887763
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1e-19 Score=170.24 Aligned_cols=178 Identities=24% Similarity=0.344 Sum_probs=118.0
Q ss_pred CcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEE
Q psy11648 341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN 420 (584)
Q Consensus 341 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~ 420 (584)
.++++.+++.+..+.. .+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+.
T Consensus 16 ~~~l~~~~~~l~~~p~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------ 80 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPS-GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD------------ 80 (251)
T ss_dssp GTEEECTTCCCSSCCS-CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT------------
T ss_pred CeEEecCCCCccccCC-CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc------------
Confidence 4455555555554322 11 13555566666665555555555555666666655555544332222
Q ss_pred CCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccc
Q psy11648 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500 (584)
Q Consensus 421 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 500 (584)
.+++|++|++++|.++.++...+..+ ++|++|++++|++.++++..|..+++|++|++++|.+
T Consensus 81 ----------------~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 81 ----------------DLTELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp ----------------TCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------cCCcCCEEECCCCcccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence 24677777777777777776677776 7788888888777777776677777788888877777
Q ss_pred ccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 501 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
.+..+..|..+++|++|++++|+++++++..|..+++|++|++++|.++.
T Consensus 144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 77666667777778888888777777777777777777777777777763
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=180.81 Aligned_cols=230 Identities=16% Similarity=0.104 Sum_probs=150.8
Q ss_pred cCCCCCEEEccCccccccccc---cccCCCCCcEEEcccCCCcccccccc--cccccCCccEEEcCCCccccccc----c
Q psy11648 263 NLNTLEWLAMDNNNIKNIRNY---SLYNLTSLNYINLEYNKISKIHNNLF--HFNIHKRLKEIRLSNNYLELIES----D 333 (584)
Q Consensus 263 ~~~~L~~L~l~~~~l~~~~~~---~l~~l~~L~~L~l~~~~l~~i~~~~~--~~~~~~~L~~L~l~~~~~~~~~~----~ 333 (584)
....++.+.+.++.++..... .+..+++|++|++++|.+....+..+ .. +++|++|++++|.++...+ .
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEAT--GLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCC--CBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhcc--CCCCCEEEeecccccchhhhhHHH
Confidence 444688888888776532110 12234679999999999986555443 44 8999999999999987433 3
Q ss_pred cccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCcc---C-CccCCCCCCCcEEecCCCCCCCCChhhhcc
Q psy11648 334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI---Y-PNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409 (584)
Q Consensus 334 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 409 (584)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++..+.... .
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA-A 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH-H
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH-H
Confidence 345789999999999999998888899999999999999987642 1 2234678899999999988764321100 0
Q ss_pred cccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCC--
Q psy11648 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL-- 487 (584)
Q Consensus 410 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-- 487 (584)
.+..+++|++|++++|.++.. .+..+..+
T Consensus 219 ------------------------l~~~l~~L~~L~Ls~N~l~~~-------------------------~p~~~~~~~~ 249 (310)
T 4glp_A 219 ------------------------LAAAGVQPHSLDLSHNSLRAT-------------------------VNPSAPRCMW 249 (310)
T ss_dssp ------------------------HHHHTCCCSSEECTTSCCCCC-------------------------CCSCCSSCCC
T ss_pred ------------------------HHhcCCCCCEEECCCCCCCcc-------------------------chhhHHhccC
Confidence 001134555566666555543 22222222
Q ss_pred -cccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 488 -DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 488 -~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
++|++|++++|.++. +|..+ .++|++|++++|++++++. +..+++|++|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~~-lp~~~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQ-VPKGL--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCCS-CCSCC--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCCc-hhhhh--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCC
Confidence 466666666666652 33333 2566666666666666532 455667777777777665
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.4e-21 Score=195.65 Aligned_cols=135 Identities=18% Similarity=0.184 Sum_probs=94.7
Q ss_pred CcccEEEccCCCCCC--CCh--hhHHHhhCCCcEEEccCCcccc-----cCccccCCCcccCeeeccCcccc----cccc
Q psy11648 439 IYIKSLDLSNNRIQE--VPV--NFLQTFADSLRKLYLDFNEIKH-----LDATAFGNLDVLELLSLEHNNIA----VVVK 505 (584)
Q Consensus 439 ~~L~~L~l~~~~l~~--~~~--~~~~~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~~ 505 (584)
++|++|++++|.++. ++. ..+..+ ++|++|++++|++.. ..+..+..+++|++|++++|.++ ..++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 677777777777762 221 234455 778888888887762 22335677788888888888875 4456
Q ss_pred cccCCCCCccEEECCCCCCCCc----Ccccc--cCCCCccEEEcCCCcCCc-----cCccc-cCCCCcceEECCCCCCCC
Q psy11648 506 RTFIGMPNLQIIDLSFNEISML----TGEQF--YFSFKLRILNISHNRLRS-----LPRDV-FSNTIIEKLDISYNQDKI 573 (584)
Q Consensus 506 ~~~~~~~~L~~L~ls~n~i~~~----~~~~~--~~~~~L~~L~L~~n~l~~-----lp~~l-~~~~~L~~l~l~~n~l~~ 573 (584)
..+..+++|++|++++|++++. .+..+ ..+++|++|++++|.++. +|..+ ..+++|+.|++++|+++.
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 6777888888888888888754 23444 237888888888888886 77777 346888888888888874
Q ss_pred C
Q psy11648 574 R 574 (584)
Q Consensus 574 ~ 574 (584)
.
T Consensus 318 ~ 318 (386)
T 2ca6_A 318 E 318 (386)
T ss_dssp T
T ss_pred c
Confidence 3
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.7e-21 Score=195.03 Aligned_cols=252 Identities=16% Similarity=0.191 Sum_probs=121.2
Q ss_pred ccceeeeecCCceeecCCc----cccccccceeeEEEecCcccc----cccccc------cccccccceeeeecCCCcee
Q psy11648 44 SKLRELEITGKDLKFIDPS----AFDNIDACYDLTLKITNTQIE----ELPSGL------FDKIENIEQMTLDLSHNKLS 109 (584)
Q Consensus 44 ~~L~~L~ls~n~~~~~~~~----~~~~~~~~L~~~L~ls~n~i~----~l~~~~------~~~~~~L~~~~L~ls~~~l~ 109 (584)
++|++|++++|.+...... .+..+ ++|+ +|++++|.+. .+|.++ +..+.+|+ +|+|++|.++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~-~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~--~L~Ls~n~l~ 107 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASK-KDLE-IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH--TVRLSDNAFG 107 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTC-TTCC-EEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC--EEECCSCCCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhC-CCcc-EEeCcccccCccccchhHHHHHHHHHHhhCCccc--EEECCCCcCC
Confidence 4455555555544443222 23343 5566 6666665433 223222 12334466 6666666655
Q ss_pred eechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccC
Q psy11648 110 VLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN 189 (584)
Q Consensus 110 ~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 189 (584)
+.... .+|..+..+++|++|++++|.++...+..+......+.... +.+..++
T Consensus 108 ~~~~~---------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~------------~~~~~~~ 160 (386)
T 2ca6_A 108 PTAQE---------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK------------KAKNAPP 160 (386)
T ss_dssp TTTHH---------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH------------HHHTCCC
T ss_pred HHHHH---------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh------------hcccCCC
Confidence 43222 12233455566666666666655444443333322111000 0011155
Q ss_pred CcEEEcCCCcccc-cch---hhhcCCCCCCEEEcCCCccceee---cCCccccccccceEEeecccccCC---CCchhhH
Q psy11648 190 LETLLLRCNKITD-LNG---NLFRHLYNLQELSLSFNKLQIIE---LNSNVFDVFEKLQLLEISFSLFNS---NEFPYYI 259 (584)
Q Consensus 190 L~~L~l~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~~l~~L~~L~l~~~~~~~---~~l~~~~ 259 (584)
|++|++++|.++. ..+ ..+..+++|++|++++|.+...+ ..+..+..+++|+.|++++|.+.+ ..++..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 6666666665542 111 24445556666666666554110 012245555666666666665421 1234433
Q ss_pred hhhcCCCCCEEEccCcccccc----ccccc--cCCCCCcEEEcccCCCcc-----cccccccccccCCccEEEcCCCccc
Q psy11648 260 LNKNLNTLEWLAMDNNNIKNI----RNYSL--YNLTSLNYINLEYNKISK-----IHNNLFHFNIHKRLKEIRLSNNYLE 328 (584)
Q Consensus 260 ~~~~~~~L~~L~l~~~~l~~~----~~~~l--~~l~~L~~L~l~~~~l~~-----i~~~~~~~~~~~~L~~L~l~~~~~~ 328 (584)
..+++|++|++++|.++.. .+..+ ..+++|++|++++|.++. ++..++.. +++|+.|++++|.++
T Consensus 241 --~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~--l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 241 --KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK--MPDLLFLELNGNRFS 316 (386)
T ss_dssp --GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH--CTTCCEEECTTSBSC
T ss_pred --ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc--CCCceEEEccCCcCC
Confidence 4566666666666666543 12233 226666666666666664 44433232 566666666666666
Q ss_pred cc
Q psy11648 329 LI 330 (584)
Q Consensus 329 ~~ 330 (584)
..
T Consensus 317 ~~ 318 (386)
T 2ca6_A 317 EE 318 (386)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.1e-19 Score=175.23 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=150.5
Q ss_pred ccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcC
Q psy11648 272 MDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351 (584)
Q Consensus 272 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 351 (584)
+..+.++... ....+++|++|+++++.+..++. +.. +++|+.|++++|.++...+ +..+++|++|++++|.+
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~~--~~~--l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQY--LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCTT--GGG--CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCccCchh--hhc--cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 3444444332 24456778888888887776652 222 6777777777777766544 66677777777777776
Q ss_pred CCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccc
Q psy11648 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431 (584)
Q Consensus 352 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~ 431 (584)
.+. ..+..+++|+.|++++|.+++.. .+..+++|++|++++|.+++.. .
T Consensus 98 ~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~---------------------------~ 146 (308)
T 1h6u_A 98 KNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS---------------------------P 146 (308)
T ss_dssp SCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG---------------------------G
T ss_pred CCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc---------------------------c
Confidence 654 24556666666666666666542 2556666666666666655432 2
Q ss_pred cccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCC
Q psy11648 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM 511 (584)
Q Consensus 432 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 511 (584)
...+++|+.|++++|.+++++. +..+ ++|++|++++|++.+.++ +..+++|++|++++|.+.+..+ +..+
T Consensus 147 ---l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l 216 (308)
T 1h6u_A 147 ---LAGLTNLQYLSIGNAQVSDLTP--LANL-SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216 (308)
T ss_dssp ---GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred ---ccCCCCccEEEccCCcCCCChh--hcCC-CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence 2236889999999999988775 7777 999999999999988765 7889999999999999988764 8999
Q ss_pred CCccEEECCCCCCCCcCcc
Q psy11648 512 PNLQIIDLSFNEISMLTGE 530 (584)
Q Consensus 512 ~~L~~L~ls~n~i~~~~~~ 530 (584)
++|+.|++++|++++.+..
T Consensus 217 ~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 217 SNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp TTCCEEEEEEEEEECCCEE
T ss_pred CCCCEEEccCCeeecCCee
Confidence 9999999999999876543
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.7e-19 Score=177.46 Aligned_cols=238 Identities=21% Similarity=0.249 Sum_probs=123.8
Q ss_pred EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCC-cChhhhccCcCCCE-Eec
Q psy11648 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS-IKTTSFKNLNNMLN-IVL 370 (584)
Q Consensus 293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l 370 (584)
+++.+++.++.+|..+ .+++++|++++|.++.+.+..|.++++|++|++++|.+.+ +....|.+++++.. +.+
T Consensus 13 ~v~C~~~~Lt~iP~~l-----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCCSCCTTC-----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCCCccCcCc-----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4455555555555432 2345555555555555544455555666666666665543 22334555555544 344
Q ss_pred cCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC-CccccccccccccccCcccEEEccCC
Q psy11648 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN-NYITNLYENDKKQAPIYIKSLDLSNN 449 (584)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~~ 449 (584)
..|.+..+.+.++..+++|++|++++|.+...+...+.. ...+..+++.+ +.+..++...+......++.|++++|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC---BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcc---cchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 455666665666666666666666666665544332211 12333344322 23333333322222345666666666
Q ss_pred CCCCCChhhHHHhhCCCcEEEccC-CcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCC-CCCCc
Q psy11648 450 RIQEVPVNFLQTFADSLRKLYLDF-NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN-EISML 527 (584)
Q Consensus 450 ~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n-~i~~~ 527 (584)
.++.++...+.. .+|+++++.+ |.++.++..+|.++++|++||+++|.++.+.+.. +.+|+.|.+.++ .++.+
T Consensus 165 ~i~~i~~~~f~~--~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 165 GIQEIHNSAFNG--TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CCCEECTTSSTT--EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCC
T ss_pred cccCCChhhccc--cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcC
Confidence 666666555543 4566666653 4555665566666666666666666666544333 333444443332 23343
Q ss_pred CcccccCCCCccEEEcCC
Q psy11648 528 TGEQFYFSFKLRILNISH 545 (584)
Q Consensus 528 ~~~~~~~~~~L~~L~L~~ 545 (584)
++ +..+++|+.+++.+
T Consensus 240 P~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 PT--LEKLVALMEASLTY 255 (350)
T ss_dssp CC--TTTCCSCCEEECSC
T ss_pred CC--chhCcChhhCcCCC
Confidence 32 45566666666654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=4e-19 Score=166.19 Aligned_cols=181 Identities=25% Similarity=0.397 Sum_probs=149.0
Q ss_pred CCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEec
Q psy11648 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394 (584)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 394 (584)
...++++++++.++.++.. + .+.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567888888888876543 2 257889999999988888878888899999999999988887777888899999999
Q ss_pred CCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCC
Q psy11648 395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN 474 (584)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n 474 (584)
++|.+++.++..+.. +++|++|++++|.++.++...+..+ ++|++|++++|
T Consensus 91 ~~n~l~~~~~~~~~~----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N 141 (251)
T 3m19_A 91 ANNQLASLPLGVFDH----------------------------LTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELRLNTN 141 (251)
T ss_dssp TTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred CCCcccccChhHhcc----------------------------cCCCCEEEcCCCcCCCcChhHhccC-CcccEEECcCC
Confidence 998887665444332 4788888888888888887777777 88999999999
Q ss_pred cccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648 475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527 (584)
Q Consensus 475 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 527 (584)
++.++++..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++...
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 98888887888889999999999998888777888899999999999988754
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.3e-20 Score=184.97 Aligned_cols=105 Identities=21% Similarity=0.209 Sum_probs=51.1
Q ss_pred cccEEEccCCC--CC--CCChhhHHHhhCCCcEEEccCCc-ccccCccccCCCcccCeeeccCcc-cccccccccCCCCC
Q psy11648 440 YIKSLDLSNNR--IQ--EVPVNFLQTFADSLRKLYLDFNE-IKHLDATAFGNLDVLELLSLEHNN-IAVVVKRTFIGMPN 513 (584)
Q Consensus 440 ~L~~L~l~~~~--l~--~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~ 513 (584)
+|++|++++|. ++ .++ ..+..+ ++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLS-TLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHH-HHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEEeCCCcccCCHHHHH-HHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 55556665552 22 122 233444 566666666665 444444455555666666666653 32222224555666
Q ss_pred ccEEECCCCCCCCcCcccccCC-CCccEEEcCCCcCCc
Q psy11648 514 LQIIDLSFNEISMLTGEQFYFS-FKLRILNISHNRLRS 550 (584)
Q Consensus 514 L~~L~ls~n~i~~~~~~~~~~~-~~L~~L~L~~n~l~~ 550 (584)
|+.|++++| ++. +.+..+ ..++.|++++|++++
T Consensus 274 L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 274 LKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCC
T ss_pred CCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcc
Confidence 666666665 322 122222 124444456666654
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1e-19 Score=178.60 Aligned_cols=255 Identities=17% Similarity=0.145 Sum_probs=167.0
Q ss_pred cCCcEEEcCCCcccccchhhhcCC--CCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCC-chhhHhhhcC
Q psy11648 188 SNLETLLLRCNKITDLNGNLFRHL--YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNE-FPYYILNKNL 264 (584)
Q Consensus 188 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-l~~~~~~~~~ 264 (584)
..++.++++++.+. +..+..+ ++++.++++++.+.+. .+ .+..+++|++|++++|.+. +. ++..+ ..+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~--~~-~~~~~~~L~~L~L~~~~l~-~~~~~~~~--~~~ 117 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP--LA-EHFSPFRVQHMDLSNSVIE-VSTLHGIL--SQC 117 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC--CC-SCCCCBCCCEEECTTCEEC-HHHHHHHH--TTB
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc--ch-hhccCCCCCEEEccCCCcC-HHHHHHHH--hhC
Confidence 34788999988766 3456666 7899999999887765 33 3556889999999998875 33 55544 788
Q ss_pred CCCCEEEccCccccccccccccCCCCCcEEEcccC-CCcc--cccccccccccCCccEEEcCCC-ccccc-ccccccCCC
Q psy11648 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN-KISK--IHNNLFHFNIHKRLKEIRLSNN-YLELI-ESDTFYNLK 339 (584)
Q Consensus 265 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~--i~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~ 339 (584)
++|++|++++|.++...+..+..+++|++|++++| .++. ++.. +.. +++|++|++++| .++.. .+..+..++
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSS--CSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHH--CTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-Hhc--CCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 99999999999888666667888899999999988 5653 3322 222 778888888888 77653 244456677
Q ss_pred -CCcEEEccCC--cCC-CcChhhhccCcCCCEEeccCCC-CCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCC
Q psy11648 340 -ELNTITLSYN--LLK-SIKTTSFKNLNNMLNIVLSFNQ-IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414 (584)
Q Consensus 340 -~L~~L~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 414 (584)
+|++|++++| .++ +..+..+..+++|+.|++++|. +++..+..+..+++|++|++++|. ...+..+..+
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l---- 268 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLEL---- 268 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGG----
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHH----
Confidence 7788888777 344 2334455567777777777776 555445566667777777777764 2222211111
Q ss_pred CCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccC
Q psy11648 415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485 (584)
Q Consensus 415 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 485 (584)
..+++|+.|++++| ++...+..+..++..|++++|++++..+..++
T Consensus 269 ---------------------~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 269 ---------------------GEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ---------------------GGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred ---------------------hcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 12567777777776 33334444423455666666666665554443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=5.8e-19 Score=173.72 Aligned_cols=240 Identities=20% Similarity=0.219 Sum_probs=136.6
Q ss_pred EEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCc-ccccccccccccCCccE-
Q psy11648 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKE- 319 (584)
Q Consensus 242 ~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~-~i~~~~~~~~~~~~L~~- 319 (584)
+++.+++.++ .+|..+ .+++++|++++|.++.+++.+|.++++|++|++++|++. .++...|.. ++++.+
T Consensus 13 ~v~C~~~~Lt--~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~--L~~l~~~ 84 (350)
T 4ay9_X 13 VFLCQESKVT--EIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN--LPKLHEI 84 (350)
T ss_dssp EEEEESTTCC--SCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS--CTTCCEE
T ss_pred EEEecCCCCC--ccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc--chhhhhh
Confidence 4455555543 455332 234555666666555555555555556666666555543 344433333 444433
Q ss_pred EEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCC-CC
Q psy11648 320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NK 398 (584)
Q Consensus 320 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~ 398 (584)
+...+|.++.+.+..+.. +++|+.+++++|.+....+..+.....+..+++.+ +.
T Consensus 85 l~~~~N~l~~l~~~~f~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQN------------------------LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140 (350)
T ss_dssp EEEEETTCCEECTTSBCC------------------------CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT
T ss_pred hcccCCcccccCchhhhh------------------------ccccccccccccccccCCchhhcccchhhhhhhccccc
Confidence 233334444444444444 44455555544444444333333344444454433 23
Q ss_pred CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccC-CCCCCCChhhHHHhhCCCcEEEccCCccc
Q psy11648 399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN-NRIQEVPVNFLQTFADSLRKLYLDFNEIK 477 (584)
Q Consensus 399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 477 (584)
+..++...|... ...++.+++++|.++.++...+. ..+++++++.+ |.++.+|.+.|..+ ++|++|++++|+++
T Consensus 141 i~~l~~~~f~~~--~~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l-~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 141 IHTIERNSFVGL--SFESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIH 215 (350)
T ss_dssp CCEECTTSSTTS--BSSCEEEECCSSCCCEECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTE-ECCSEEECTTSCCC
T ss_pred cccccccchhhc--chhhhhhccccccccCCChhhcc--ccchhHHhhccCCcccCCCHHHhccC-cccchhhcCCCCcC
Confidence 443333333222 12345566666666555444332 46789999975 67899998899998 99999999999999
Q ss_pred ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCC
Q psy11648 478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522 (584)
Q Consensus 478 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n 522 (584)
.+++..|.++ +.|.+.++.-...+| .+..+++|+.++++++
T Consensus 216 ~lp~~~~~~L---~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 216 SLPSYGLENL---KKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCSSSCTTC---CEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccChhhhccc---hHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 9987766654 555544443233444 4789999999999865
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=155.22 Aligned_cols=132 Identities=21% Similarity=0.350 Sum_probs=69.2
Q ss_pred cccEEEccCCCCCCCC-hhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEE
Q psy11648 440 YIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIID 518 (584)
Q Consensus 440 ~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 518 (584)
.+++|++++|.++.++ ...|..+ ++|++|++++|++.++++..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKL-PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccC-CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 3445555555555442 2334444 5555555555555555544555555555555555555555544555555555555
Q ss_pred CCCCCCCCcCcccccCCCCccEEEcCCCcCCcc-CccccCCCCcceEECCCCCCC
Q psy11648 519 LSFNEISMLTGEQFYFSFKLRILNISHNRLRSL-PRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 519 ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~l~l~~n~l~ 572 (584)
+++|+++++.+..|..+++|++|++++|+++.+ |..+..+++|+.|++++|+++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555555555555555555555555555555544 334444455555555555554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.7e-18 Score=163.96 Aligned_cols=188 Identities=29% Similarity=0.348 Sum_probs=125.5
Q ss_pred EEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423 (584)
Q Consensus 344 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~ 423 (584)
+.+..+.+.+.. ....+++|+.|++++|.+... ..+..+++|++|++++|.+++..+ +..++.|+.|++++
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDE 99 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-----cccCCCCCEEECCC
Confidence 344455554432 234678889999998888876 347778899999999998877543 33455777777777
Q ss_pred CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503 (584)
Q Consensus 424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 503 (584)
|.++..+. ...+++|++|++++|.++.++ .+..+ ++|+.|++++|++.+. ..+..+++|++|++++|.+.+.
T Consensus 100 n~l~~~~~---l~~l~~L~~L~L~~n~i~~~~--~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 100 NKVKDLSS---LKDLKKLKSLSLEHNGISDIN--GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SCCCCGGG---GTTCTTCCEEECTTSCCCCCG--GGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CcCCCChh---hccCCCCCEEECCCCcCCCCh--hhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 77766543 334667777777777776653 35555 6777777777776655 3466667777777777777665
Q ss_pred cccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552 (584)
Q Consensus 504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp 552 (584)
.+ +..+++|+.|++++|++++++. +..+++|+.|++++|+++..|
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred hh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence 44 6667777777777777766532 566777777777777666544
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=5.4e-18 Score=154.66 Aligned_cols=150 Identities=25% Similarity=0.357 Sum_probs=103.5
Q ss_pred eEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccC
Q psy11648 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497 (584)
Q Consensus 418 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 497 (584)
.++.+++.++.++... .++++.|++++|.++.++...|..+ ++|++|++++|++..+.+..|.++++|++|++++
T Consensus 15 ~v~c~~~~l~~iP~~l----~~~l~~L~l~~n~i~~i~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL----PETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEECTTSCCSSCCSSC----CTTCCEEECCSSCCCEECTTSSTTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEEcCCCCcCcCCCcc----CcCCCEEECCCCcCCCcCHhHhhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4444555555444322 2567777777777777666666666 7777777777777777666777777777777777
Q ss_pred cccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEECCCCCCC
Q psy11648 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 498 n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~l~~n~l~ 572 (584)
|.++...+..|..+++|++|++++|+++++++..|..+++|++|+|++|+++.++.. +..+++|+.|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777766666667777777777777777777777777777777777777777776654 444577777777777764
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=2.3e-17 Score=170.54 Aligned_cols=177 Identities=19% Similarity=0.223 Sum_probs=81.7
Q ss_pred CCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceE
Q psy11648 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL 419 (584)
Q Consensus 340 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L 419 (584)
+++.|++++|.++++ +..+ .++|+.|++++|.++.+ | ..+++|+.|++++|.+++++. +.. .|+.|
T Consensus 60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~--l~~-----~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE--LPA-----SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC--CCT-----TCCEE
T ss_pred CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch--hhc-----CCCEE
Confidence 566666666666553 2222 24566666666666543 2 234566666666666555332 111 44555
Q ss_pred ECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcc
Q psy11648 420 NLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499 (584)
Q Consensus 420 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 499 (584)
++++|.++.++. .+++|+.|++++|.++.+|. .+ ++|++|++++|++++++. +. ++|+.|++++|.
T Consensus 126 ~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~----~l-~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 126 DVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE----LP-TSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL 191 (571)
T ss_dssp ECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC----CC-TTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred ECCCCcCCCCCC-----cCccccEEeCCCCccCcCCC----cC-CCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence 555555544333 13445555555555544442 12 445555555554444332 22 445555555544
Q ss_pred cccccccccCCCCCc-------cEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 500 IAVVVKRTFIGMPNL-------QIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 500 ~~~~~~~~~~~~~~L-------~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
++. +|. +.. +| +.|++++|+++.+++. +..+++|+.|++++|.++
T Consensus 192 L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 192 LES-LPA-VPV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CSS-CCC-CC----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCC
T ss_pred CCc-hhh-HHH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCC
Confidence 442 222 222 33 4444444444443322 222444444444444444
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.9e-17 Score=148.86 Aligned_cols=178 Identities=22% Similarity=0.284 Sum_probs=88.3
Q ss_pred EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC
Q psy11648 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372 (584)
Q Consensus 293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 372 (584)
.++.+++.++.++... .++++.|++++|.++...+..+..+++|++|++++|.+.++.+..+..+++|++|++++
T Consensus 11 ~v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 3444444444444322 23444555555544444443444455555555555555544444444455555555555
Q ss_pred CCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCC
Q psy11648 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452 (584)
Q Consensus 373 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 452 (584)
|.+++..+..+..+++|++|++++|.+++.+...+. .+++|++|++++|.++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----------------------------~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----------------------------KLTQLKDLRLYQNQLK 137 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------TCTTCCEEECCSSCCS
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc----------------------------cCCcCCEEECCCCccc
Confidence 555544444444555555555555554443322211 1355556666665555
Q ss_pred CCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCC
Q psy11648 453 EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM 511 (584)
Q Consensus 453 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 511 (584)
.++...+..+ ++|++|++++|.+. ..+++|++|+++.|.+++.+|..++.+
T Consensus 138 ~~~~~~~~~l-~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 138 SVPDGVFDRL-TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCCTTTTTTC-TTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred eeCHHHhccC-CCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 5554445555 56666666665432 234456666666666666555544443
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=9.1e-18 Score=165.83 Aligned_cols=156 Identities=31% Similarity=0.339 Sum_probs=123.6
Q ss_pred CceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648 416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL 495 (584)
Q Consensus 416 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 495 (584)
++.|++++|.++.++.......+++|+.|++++|.++.++...|..+ ++|++|++++|++..+++..|..+++|++|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-CCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 35555555555555444332246888999999998888887778888 89999999999998888888888999999999
Q ss_pred cCcccccccccccCCCCCccEEECCCCCCCCcCcccc---cCCCCccEEEcCCCcCCccCc-cccCCCC--cceEECCCC
Q psy11648 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF---YFSFKLRILNISHNRLRSLPR-DVFSNTI--IEKLDISYN 569 (584)
Q Consensus 496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~---~~~~~L~~L~L~~n~l~~lp~-~l~~~~~--L~~l~l~~n 569 (584)
++|.+....+..|..+++|++|++++|+++.+++..| ..+++|++|+|++|+|+.+|. .+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 9999988888888999999999999999998888777 568899999999999998875 3444555 488999999
Q ss_pred CCC
Q psy11648 570 QDK 572 (584)
Q Consensus 570 ~l~ 572 (584)
++.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 875
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=4.2e-17 Score=147.77 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=136.1
Q ss_pred cEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEE
Q psy11648 390 VKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469 (584)
Q Consensus 390 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 469 (584)
+.++.+++.++.++... .+.++.+++++|.++.++... +..+++|++|++++|.++.++...+..+ ++|++|
T Consensus 10 ~~v~c~~~~l~~~p~~~------~~~l~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI------PAQTTYLDLETNSLKSLPNGV-FDELTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYL 81 (208)
T ss_dssp TEEECCSSCCSSCCSCC------CTTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTC-TTCCEE
T ss_pred CEEEecCCCccCCCCCC------CCCCcEEEcCCCccCcCChhh-hcccccCcEEECCCCccCccChhhcCCC-CCcCEE
Confidence 56777777777665332 236788888888888665543 3447888888888888888887777777 888888
Q ss_pred EccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 470 YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 470 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
++++|++.+.++..|..+++|++|++++|.+.+..+..|..+++|++|++++|+++++++..+..+++|++|++++|.+.
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 88888888877777888888888888888888777777888888888888888888888877888888888888888655
Q ss_pred ccCccccCCCCcceEECCCCCCC-CCCCC
Q psy11648 550 SLPRDVFSNTIIEKLDISYNQDK-IRPGR 577 (584)
Q Consensus 550 ~lp~~l~~~~~L~~l~l~~n~l~-~~p~~ 577 (584)
. .++.|+.|+++.|.++ .+|+.
T Consensus 162 ~------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 C------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp C------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred c------CCCCHHHHHHHHHhCCceeecc
Confidence 2 3467888888888888 67654
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=5.8e-18 Score=167.23 Aligned_cols=159 Identities=23% Similarity=0.327 Sum_probs=140.9
Q ss_pred ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHH-HhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQ-TFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL 495 (584)
Q Consensus 417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 495 (584)
+.++++++.++.++... .+.++.|++++|.++.++...+. .+ ++|++|++++|++..+++..|..+++|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccC----CCCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 45667777777665533 36799999999999999888787 77 99999999999999999889999999999999
Q ss_pred cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc----CCCCcceEECCCCCC
Q psy11648 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF----SNTIIEKLDISYNQD 571 (584)
Q Consensus 496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~----~~~~L~~l~l~~n~l 571 (584)
++|.+....+..|..+++|++|++++|++.++.+..|..+++|++|+|++|+|+.+|...+ .+++|+.|++++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999998888889999999999999999999999999999999999999999999998874 579999999999999
Q ss_pred CCCCCCCCC
Q psy11648 572 KIRPGRESN 580 (584)
Q Consensus 572 ~~~p~~~~~ 580 (584)
+.+|...|.
T Consensus 176 ~~l~~~~~~ 184 (361)
T 2xot_A 176 KKLPLTDLQ 184 (361)
T ss_dssp CCCCHHHHH
T ss_pred CccCHHHhh
Confidence 998865443
No 105
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=8.3e-18 Score=163.98 Aligned_cols=220 Identities=15% Similarity=0.217 Sum_probs=141.6
Q ss_pred CCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCC----CCCCChhhhcccccC
Q psy11648 338 LKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK----LKDFNLNVFSNITSK 413 (584)
Q Consensus 338 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----l~~~~~~~~~~~~~~ 413 (584)
|++|+.+.+.. .+..+....|.+|++|+.++++.|.+..+.+.+|..+.++..+...... ...+....|..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~--- 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG--- 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES---
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc---
Confidence 67777777766 6666666667777777777777777666666666666666666554421 112222222222
Q ss_pred CCCc-eEECCCCccccccccc--cccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCccc
Q psy11648 414 QTPM-NLNLSNNYITNLYEND--KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490 (584)
Q Consensus 414 ~~l~-~L~l~~~~l~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 490 (584)
..++ .+.+.... .++... ......++..+.+.+. +.......+...+++|+++++++|++..++..+|.+|.+|
T Consensus 176 ~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 176 EPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 1222 22222110 000000 0012455666666654 2222222233323889999999888888888889999999
Q ss_pred CeeeccCcccccccccccCCCCCcc-EEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc-CCCCcceEEC
Q psy11648 491 ELLSLEHNNIAVVVKRTFIGMPNLQ-IIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-SNTIIEKLDI 566 (584)
Q Consensus 491 ~~L~l~~n~~~~~~~~~~~~~~~L~-~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~-~~~~L~~l~l 566 (584)
+++++.+| +..+...+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+++++++|+++.|+...+ .+++|+.++.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999887 7777778899999998 999988 7888888889999999999998999988877544 4588888763
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=149.28 Aligned_cols=152 Identities=23% Similarity=0.360 Sum_probs=118.4
Q ss_pred EEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEE
Q psy11648 391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLY 470 (584)
Q Consensus 391 ~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 470 (584)
.++++++.++.++... ...++.|++++|.++.......+..+++|++|++++|.++.++...|..+ ++|++|+
T Consensus 15 ~l~~s~n~l~~iP~~~------~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI------PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVNEIL 87 (220)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEE
T ss_pred EeEeCCCCcccCccCC------CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC-CCCCEEE
Confidence 4555555555443221 11235566666666555444444557888999999988888887778888 8899999
Q ss_pred ccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 471 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
+++|++.+.++..|..+++|++|++++|.+.+..+..|..+++|++|++++|+++++.|..|..+++|++|++++|.++
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999998888888888999999999999998888888889999999999999999988888888999999999999876
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=4.7e-18 Score=165.72 Aligned_cols=227 Identities=17% Similarity=0.136 Sum_probs=144.2
Q ss_pred CCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCE
Q psy11648 288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367 (584)
Q Consensus 288 l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 367 (584)
+++|+.+++.+ .++.++...|.. +++|+.+++..|.+..+.+..|..+..+..+........
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~--~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~--------------- 161 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKG--CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY--------------- 161 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTT--CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH---------------
T ss_pred cCCCcEEECCc-cccchhHHHhhc--CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh---------------
Confidence 56666666655 555555555554 555555555555555555555555444444443321100
Q ss_pred EeccCCCCCccCCccCCCCCCCc-EEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEc
Q psy11648 368 IVLSFNQIKYIYPNAFVNLPNLV-KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDL 446 (584)
Q Consensus 368 L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l 446 (584)
.....+...++..+..|+ .+.+.... ..+...+........+..+.+.+.- ...........+++|+.+++
T Consensus 162 -----~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 162 -----RFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp -----HTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEEC
T ss_pred -----hccccccccccccccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEEC
Confidence 011112223344444554 33333221 1111112111122333444443321 11111111123789999999
Q ss_pred cCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccC-eeeccCcccccccccccCCCCCccEEECCCCCCC
Q psy11648 447 SNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE-LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525 (584)
Q Consensus 447 ~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~ 525 (584)
++|+++.++...|.++ .+|+++++.+| +..++..+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++
T Consensus 234 ~~n~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTBCCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCCcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 9999999999999998 99999999987 8888899999999999 999998 787777889999999999999999999
Q ss_pred CcCcccccCCCCccEEEc
Q psy11648 526 MLTGEQFYFSFKLRILNI 543 (584)
Q Consensus 526 ~~~~~~~~~~~~L~~L~L 543 (584)
.+.+.+|.+|++|+.++.
T Consensus 311 ~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTCTTCCCCEEEC
T ss_pred ccchhhhcCCcchhhhcc
Confidence 999999999999999874
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2e-17 Score=173.00 Aligned_cols=191 Identities=30% Similarity=0.339 Sum_probs=140.9
Q ss_pred cEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEEC
Q psy11648 342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL 421 (584)
Q Consensus 342 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l 421 (584)
..+.+..+.+..... +..++.|+.|++++|.+..+ ..+..+++|+.|++++|.+.+.++ +..++.|+.|++
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~L 94 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEEC
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh-----hccCCCCCEEEC
Confidence 344555555555432 45678899999999988876 257889999999999999887654 335567888888
Q ss_pred CCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc
Q psy11648 422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501 (584)
Q Consensus 422 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 501 (584)
++|.+..++ ....+++|+.|++++|.+..++ .+..+ ++|+.|+|++|.+.++ ..+..+++|+.|+|++|.+.
T Consensus 95 s~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~--~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 95 DENKIKDLS---SLKDLKKLKSLSLEHNGISDIN--GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CSSCCCCCT---TSTTCTTCCEEECTTSCCCCCG--GGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred cCCCCCCCh---hhccCCCCCEEEecCCCCCCCc--cccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 888887654 2345678888888888887764 35666 7888888888887766 45677888888888888887
Q ss_pred cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy11648 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553 (584)
Q Consensus 502 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~ 553 (584)
+..+ +..+++|+.|+|++|++.+++ .+..+++|+.|+|++|+++..|.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcc
Confidence 7655 777888888888888887763 36778888888888887776543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=7.5e-17 Score=153.93 Aligned_cols=195 Identities=26% Similarity=0.326 Sum_probs=153.7
Q ss_pred ccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCC
Q psy11648 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD 396 (584)
Q Consensus 317 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 396 (584)
+..+.+....++... ....++.++.|++++|.+.... .+..+++|+.|++++|.+++..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 333445555554432 2346788999999999888763 47788999999999999988744 88899999999999
Q ss_pred CCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcc
Q psy11648 397 NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI 476 (584)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l 476 (584)
|.+++.+ .+..++.|+.|++++|.++..+. ...+++|+.|++++|.++.+ ..+..+ ++|++|++++|++
T Consensus 100 n~l~~~~-----~l~~l~~L~~L~L~~n~i~~~~~---l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~N~l 168 (291)
T 1h6t_A 100 NKVKDLS-----SLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQI 168 (291)
T ss_dssp SCCCCGG-----GGTTCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCC
T ss_pred CcCCCCh-----hhccCCCCCEEECCCCcCCCChh---hcCCCCCCEEEccCCcCCcc--hhhccC-CCCCEEEccCCcc
Confidence 9987743 24456789999999999887642 34578999999999999887 457777 9999999999999
Q ss_pred cccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccc
Q psy11648 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532 (584)
Q Consensus 477 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 532 (584)
.+.++ +..+++|++|++++|.+++. ..+..+++|+.|++++|++...+...+
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~~~~~~ 220 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 220 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCCccccc
Confidence 88765 78899999999999999875 348899999999999999887655433
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.1e-16 Score=146.96 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=101.5
Q ss_pred ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496 (584)
Q Consensus 417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 496 (584)
+.++.+++.++.++... .+++++|++++|.+..+++..+..+ ++|++|++++|++..+++..|..+++|++|+++
T Consensus 22 ~~v~c~~~~l~~ip~~~----~~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI----PTNAQILYLHDNQITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeEccCCCcCccCCCC----CCCCCEEEcCCCccCccCHHHhhCc-cCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 34444444444444322 2667777777777776665666666 777777777777776666667777777777777
Q ss_pred CcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEECCCCCCC
Q psy11648 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~l~~n~l~ 572 (584)
+|.++...+..|..+++|++|++++|+++.++ ..+..+++|++|++++|+|+.+|.. +..+++|+.|++++|+++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77777666666777777777777777777553 4456677777777777777776653 444577777777777776
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.2e-17 Score=145.13 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=121.4
Q ss_pred CCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeee
Q psy11648 415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS 494 (584)
Q Consensus 415 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 494 (584)
.++.+++++|.++.++. ...+++|++|++++|.++.++ .+..+ ++|++|++++|++.+..+..+..+++|++|+
T Consensus 45 ~L~~L~l~~n~i~~l~~---l~~l~~L~~L~l~~n~~~~~~--~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 45 SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYN--PISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp TCCEEEEESSCCSCCTT---GGGCTTCSEEEEESCCCSCCG--GGTTC-TTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CccEEeccCCCccChHH---HhcCCCCCEEEccCCCCCcch--hhhcC-CCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34444444444443331 233688999999999877664 56677 9999999999999887777899999999999
Q ss_pred ccCcccccccccccCCCCCccEEECCCCC-CCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCC
Q psy11648 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNE-ISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKI 573 (584)
Q Consensus 495 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~ 573 (584)
+++|.+.+..+..+..+++|++|++++|+ ++.++ .+..+++|++|++++|+++.++ .+..+++|+.|++++|++..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99999998778889999999999999998 77774 4888999999999999999988 78888999999999999863
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.5e-16 Score=146.10 Aligned_cols=140 Identities=26% Similarity=0.340 Sum_probs=128.9
Q ss_pred cccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648 440 YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519 (584)
Q Consensus 440 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 519 (584)
+-+.++.+++.++.+|... +++|++|++++|++.++.+..|..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~----~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI----PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCccCCCC----CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4678999999999998532 389999999999999998889999999999999999998887778899999999999
Q ss_pred CCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP 583 (584)
Q Consensus 520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~ 583 (584)
++|+++++++..|..+++|++|++++|+|+.+|..+..+++|+.|++++|.++.+|...|..+|
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 9999999999989999999999999999999999999999999999999999999988887654
No 113
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1.2e-15 Score=151.61 Aligned_cols=262 Identities=14% Similarity=0.232 Sum_probs=147.5
Q ss_pred CCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcE
Q psy11648 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343 (584)
Q Consensus 264 ~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 343 (584)
+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.++...|.. .+|+.+.+.. .++.+....|.+|++|+.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~---~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN---STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT---CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC---CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 45555555544 3455555566654 5677766554 56666666653 3566666664 455555566677777777
Q ss_pred EEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423 (584)
Q Consensus 344 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~ 423 (584)
+++..|.+..+....|. +.+|+.+.+.. .+..+...+|..|++|+.+++..+ ++.+...+|..
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-------------- 247 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-------------- 247 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT--------------
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc--------------
Confidence 77776666665555555 46777777763 366666667777777777777653 34444333332
Q ss_pred CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCccc-----ccCccccCCCcccCeeeccCc
Q psy11648 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK-----HLDATAFGNLDVLELLSLEHN 498 (584)
Q Consensus 424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n 498 (584)
.+|+.+.+. +.++.++...|.++ ++|+.+.+.++.+. .+...+|.+|++|+.+++.+
T Consensus 248 ---------------~~L~~i~lp-~~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 248 ---------------SGITTVKLP-NGVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp ---------------CCCSEEEEE-TTCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred ---------------CCccEEEeC-CCccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 234444442 23444444555554 55555555554433 34445566666666666652
Q ss_pred ccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC-C-CCcceEECCCC
Q psy11648 499 NIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS-N-TIIEKLDISYN 569 (584)
Q Consensus 499 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~-~-~~L~~l~l~~n 569 (584)
.+..+...+|.+|++|+.+.+.. .++.+...+|.+| +|+.+++.+|.+..++...+. + ..++.|.+..+
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 34444445566666666666643 3555555566666 666666666655555444333 2 34555555444
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.4e-16 Score=145.21 Aligned_cols=111 Identities=27% Similarity=0.358 Sum_probs=63.8
Q ss_pred cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII 517 (584)
Q Consensus 438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 517 (584)
+++|+.|++++|.++.+.+..|.++ ++|++|++++|++..+++..|.++++|++|++++|.+.+..+..|..+++|++|
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCC-cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 3455555555555555444455555 555555555555555555555555666666666666655555555566666666
Q ss_pred ECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
++++|+++++++..|..+++|++|++++|.+.
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666666655555555666666666666543
No 115
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.3e-15 Score=151.52 Aligned_cols=253 Identities=17% Similarity=0.227 Sum_probs=172.2
Q ss_pred CCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCE
Q psy11648 288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367 (584)
Q Consensus 288 l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 367 (584)
+..++.+.+.+ .++.++...|.. + +|+.+.+..+ ++.+....|.++ .|+.+.+.. .+..+....|.+|++|+.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~--~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRN--S-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTT--C-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccCEehHhhccc--C-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 35566666543 355566655553 2 4666665544 444444445443 355555543 333333344445555555
Q ss_pred EeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEcc
Q psy11648 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447 (584)
Q Consensus 368 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 447 (584)
+++..+.++.+...+|. +.+|+.+.+..+ ++.+... .+..|++|+.+++.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~----------------------------l~~I~~~-aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT----------------------------LKEIGSQ-AFLKTSQLKTIEIP 234 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT----------------------------CCEECTT-TTTTCTTCCCEECC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc----------------------------hheehhh-HhhCCCCCCEEecC
Confidence 55554444444333333 344444444322 3333222 23346888999988
Q ss_pred CCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc-----cccccccCCCCCccEEECCCC
Q psy11648 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA-----VVVKRTFIGMPNLQIIDLSFN 522 (584)
Q Consensus 448 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~ls~n 522 (584)
.+ ++.++...|.+ .+|+.+.+. +.+..+...+|.+|++|+.+++.++.+. .....+|.+|++|+.+++. +
T Consensus 235 ~~-l~~I~~~aF~~--~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE--SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp TT-CCEECTTTTTT--CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred CC-ccCcccccccc--CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 64 67788788887 789999994 5678888889999999999999988765 4566789999999999999 5
Q ss_pred CCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648 523 EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP 583 (584)
Q Consensus 523 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~ 583 (584)
.+..+...+|.+|++|+.+.+.++ ++.|+...+...+|+.+++++|....++...|..+|
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSC
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCC
Confidence 699999999999999999999655 787776555544999999999999999999998775
No 116
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.5e-15 Score=151.79 Aligned_cols=329 Identities=17% Similarity=0.233 Sum_probs=202.2
Q ss_pred chhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHh
Q psy11648 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYIL 260 (584)
Q Consensus 181 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~ 260 (584)
.+|. .|.+|+.+.+.. .++.+...+|.+|++|+.+++..+ +..+ ...+|..+.+|+.+.+..+. ..+....|
T Consensus 65 ~AF~-~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I--~~~aF~~c~~L~~i~~p~~l---~~i~~~aF 136 (394)
T 4fs7_A 65 AAFQ-GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMI--GRCTFSGCYALKSILLPLML---KSIGVEAF 136 (394)
T ss_dssp TTTT-TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEE--CTTTTTTCTTCCCCCCCTTC---CEECTTTT
T ss_pred HHhh-CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEc--cchhhcccccchhhcccCce---eeecceee
Confidence 3444 677788888864 366666677888888888888654 5555 56677777777777665442 23444444
Q ss_pred hhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCC
Q psy11648 261 NKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKE 340 (584)
Q Consensus 261 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 340 (584)
..+..++...... ...+...+|..+.+|+.+.+.++ +..++...|.. +.+|+.+.+..+ ++......+.++..
T Consensus 137 -~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~--c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 137 -KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSG--CGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp -TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT--CTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred -ecccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccC--CCCceEEEcCCC-ceEeCchhhccccc
Confidence 4454333332222 23334456777888888887544 45666666665 777777777655 55555566777777
Q ss_pred CcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEE
Q psy11648 341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN 420 (584)
Q Consensus 341 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~ 420 (584)
|+.+.+..+... + .........|+.+.+.. .++.+...++..+..++.+.+..+. ..+....|
T Consensus 210 L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F------------- 272 (394)
T 4fs7_A 210 LENMEFPNSLYY-L-GDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNK-LRIGGSLF------------- 272 (394)
T ss_dssp CCBCCCCTTCCE-E-CTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTT-CEECSCTT-------------
T ss_pred cceeecCCCceE-e-ehhhcccCCCceEEECC-CceecccccccccccceeEEcCCCc-ceeecccc-------------
Confidence 777766554221 1 11222345677776653 2344445566677777777765542 11222222
Q ss_pred CCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccc
Q psy11648 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500 (584)
Q Consensus 421 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 500 (584)
..+..++.+...... ++...|..+ .+|+.+.+..+ +..+...+|.+|.+|+.+++..+ +
T Consensus 273 ---------------~~~~~l~~~~~~~~~---i~~~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v 331 (394)
T 4fs7_A 273 ---------------YNCSGLKKVIYGSVI---VPEKTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V 331 (394)
T ss_dssp ---------------TTCTTCCEEEECSSE---ECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred ---------------ccccccceeccCcee---ecccccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence 224555555554432 333455555 77777777643 55666677778888888888643 5
Q ss_pred ccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceE
Q psy11648 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKL 564 (584)
Q Consensus 501 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l 564 (584)
+.+...+|.+|.+|+.+++..+ ++.+...+|.+|++|+++++.++ ++.+...+..|++|+.+
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 5555667888888888888765 77777778888888888888654 44455666777777764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.1e-17 Score=154.00 Aligned_cols=107 Identities=22% Similarity=0.332 Sum_probs=74.3
Q ss_pred cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII 517 (584)
Q Consensus 438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 517 (584)
+++|++|++++|.++.++... . ++|++|++++|++.+.+ .+..+++|++|++++|.+++. ..+..+++|++|
T Consensus 84 l~~L~~L~L~~N~l~~l~~~~--~--~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L 155 (263)
T 1xeu_A 84 LTKLEELSVNRNRLKNLNGIP--S--ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVL 155 (263)
T ss_dssp CSSCCEEECCSSCCSCCTTCC--C--SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEE
T ss_pred CCCCCEEECCCCccCCcCccc--c--CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC--hHHccCCCCCEE
Confidence 567777777777777665321 1 67777777777777653 466777777777777777765 256777777777
Q ss_pred ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc
Q psy11648 518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554 (584)
Q Consensus 518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~ 554 (584)
++++|++.++ ..+..+++|+.|++++|+++..|..
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence 7777777766 4466777777777777777765543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=1.2e-15 Score=157.72 Aligned_cols=184 Identities=21% Similarity=0.257 Sum_probs=80.3
Q ss_pred CccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecC
Q psy11648 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395 (584)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 395 (584)
+++.|++++|.++++... + .++|+.|++++|.++.+. ..+++|+.|++++|.++++ |. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~-l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN-L--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSC-C--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHh-H--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence 444555555544443221 1 134555555555444332 2234455555555554443 22 222 45555555
Q ss_pred CCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCc
Q psy11648 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE 475 (584)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~ 475 (584)
+|.+++++. .++.|+.|++++|.++.++. .+++|+.|++++|.++.+|. +. ++|+.|++++|+
T Consensus 129 ~N~l~~lp~-------~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 129 NNQLTMLPE-------LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNL 191 (571)
T ss_dssp SSCCSCCCC-------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSC
T ss_pred CCcCCCCCC-------cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--hh---CCCCEEECcCCC
Confidence 555444322 12344555555555444332 13445555555555544443 21 445555555555
Q ss_pred ccccCccccCCCccc-------CeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccc
Q psy11648 476 IKHLDATAFGNLDVL-------ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532 (584)
Q Consensus 476 l~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 532 (584)
++.++. +.. +| +.|++++|.++. +|..+..+++|+.|++++|++++..|..+
T Consensus 192 L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 192 LESLPA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CSSCCC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCchhh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 443332 221 33 555555555443 23333335555555555555544444333
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=6.4e-16 Score=161.69 Aligned_cols=206 Identities=24% Similarity=0.293 Sum_probs=165.2
Q ss_pred CCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEec
Q psy11648 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394 (584)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 394 (584)
..+..+.+..+.+....+ +..++.|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 344455566666555432 456788999999999988763 57889999999999999998744 889999999999
Q ss_pred CCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCC
Q psy11648 395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN 474 (584)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n 474 (584)
++|.+.+.+ .+..++.|+.|++++|.+..++. +..+++|+.|++++|.+..+ ..+..+ ++|+.|+|++|
T Consensus 95 s~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N 163 (605)
T 1m9s_A 95 DENKIKDLS-----SLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDN 163 (605)
T ss_dssp CSSCCCCCT-----TSTTCTTCCEEECTTSCCCCCGG---GGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSS
T ss_pred cCCCCCCCh-----hhccCCCCCEEEecCCCCCCCcc---ccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCC
Confidence 999988753 34466799999999999987643 44579999999999999887 457777 99999999999
Q ss_pred cccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEE
Q psy11648 475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRIL 541 (584)
Q Consensus 475 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L 541 (584)
.+.+.++ +..+++|++|+|++|.+.+. ..+..+++|+.|++++|++.+.+...+..+..+..+
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l 226 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecccc
Confidence 9988766 88999999999999999876 468999999999999999987765554444443333
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.1e-16 Score=137.76 Aligned_cols=136 Identities=21% Similarity=0.184 Sum_probs=119.7
Q ss_pred cCcccEEEccCCCCC--CCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCcc
Q psy11648 438 PIYIKSLDLSNNRIQ--EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515 (584)
Q Consensus 438 ~~~L~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 515 (584)
+++++.|++++|.++ .+| ..+..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~-~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE-GLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS-SCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHH-HHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 478999999999987 776 446777 9999999999998877 6788899999999999999987777788899999
Q ss_pred EEECCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc----cccCCCCcceEECCCCCCCCCCCC
Q psy11648 516 IIDLSFNEISMLTG-EQFYFSFKLRILNISHNRLRSLPR----DVFSNTIIEKLDISYNQDKIRPGR 577 (584)
Q Consensus 516 ~L~ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~lp~----~l~~~~~L~~l~l~~n~l~~~p~~ 577 (584)
+|++++|++++++. ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+..+|..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999999998754 678899999999999999999887 677789999999999999988865
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.2e-14 Score=145.35 Aligned_cols=328 Identities=14% Similarity=0.170 Sum_probs=210.3
Q ss_pred hhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCC
Q psy11648 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYN 213 (584)
Q Consensus 134 ~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 213 (584)
+|.+|++|+.+.+..+ ++.++.. +|. .|++|+.+++..+ ++.+...+|.++..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~------------------------aF~-~c~~L~~i~lp~~-l~~I~~~aF~~c~~ 118 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEF------------------------AFE-NCSKLEIINIPDS-VKMIGRCTFSGCYA 118 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTT------------------------TTT-TCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred HhhCCCCceEEEeCCC-ccCcchh------------------------Hhh-CCCCCcEEEeCCC-ceEccchhhccccc
Confidence 4666777888877654 5665444 443 6777888887654 55566667777888
Q ss_pred CCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcE
Q psy11648 214 LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNY 293 (584)
Q Consensus 214 L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 293 (584)
|+.+.+..+ +... ...+|..+..++....... ..+....| ..|++|+.+.+.++ +..+...+|..+.+|+.
T Consensus 119 L~~i~~p~~-l~~i--~~~aF~~~~~~~~~~~~~~----~~i~~~aF-~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~ 189 (394)
T 4fs7_A 119 LKSILLPLM-LKSI--GVEAFKGCDFKEITIPEGV----TVIGDEAF-ATCESLEYVSLPDS-METLHNGLFSGCGKLKS 189 (394)
T ss_dssp CCCCCCCTT-CCEE--CTTTTTTCCCSEEECCTTC----CEECTTTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCB
T ss_pred chhhcccCc-eeee--cceeeecccccccccCccc----cccchhhh-cccCCCcEEecCCc-cceeccccccCCCCceE
Confidence 887777644 4444 4556666654444333322 23344445 67888888888654 34455567788888888
Q ss_pred EEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCC
Q psy11648 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373 (584)
Q Consensus 294 L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 373 (584)
+.+..+ ++.++...|.. +..|+.+.+..+.... . .....+..++.+.+... ...+....+..+..++.+.+..+
T Consensus 190 i~l~~~-~~~I~~~~F~~--~~~L~~i~~~~~~~~i-~-~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAE--CILLENMEFPNSLYYL-G-DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CCCCTT-CCEECTTTTTT--CTTCCBCCCCTTCCEE-C-TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred EEcCCC-ceEeCchhhcc--ccccceeecCCCceEe-e-hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 887655 66677766666 7777777766553321 1 22334567777777543 23344456777888888888765
Q ss_pred CCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCC
Q psy11648 374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE 453 (584)
Q Consensus 374 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ 453 (584)
. ..+....+..+..++.+......+. ... +..+.+|+.+.+..+ +..
T Consensus 264 ~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~----------------------------F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 264 K-LRIGGSLFYNCSGLKKVIYGSVIVP---EKT----------------------------FYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp T-CEECSCTTTTCTTCCEEEECSSEEC---TTT----------------------------TTTCTTCCEEEECTT-CCE
T ss_pred c-ceeeccccccccccceeccCceeec---ccc----------------------------ccccccccccccccc-cce
Confidence 3 3444567778888887776544221 111 223566777777543 556
Q ss_pred CChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccccc
Q psy11648 454 VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFY 533 (584)
Q Consensus 454 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~ 533 (584)
++...|.++ .+|+++++.. .+..+...+|.+|.+|+.+++..+ +..+...+|.+|++|+.+++..+ +..+ ..+|.
T Consensus 311 I~~~aF~~c-~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~ 385 (394)
T 4fs7_A 311 IGEEAFESC-TSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFE 385 (394)
T ss_dssp ECTTTTTTC-TTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBC
T ss_pred echhhhcCC-CCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-hheec
Confidence 666677776 7888888864 366677778888888888888765 55566677888888888888653 3333 35677
Q ss_pred CCCCccEE
Q psy11648 534 FSFKLRIL 541 (584)
Q Consensus 534 ~~~~L~~L 541 (584)
+|++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 88888765
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.1e-15 Score=136.90 Aligned_cols=134 Identities=12% Similarity=0.161 Sum_probs=120.9
Q ss_pred cccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCcc
Q psy11648 436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515 (584)
Q Consensus 436 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 515 (584)
..+++++.|++++|.++.++ .+..+ ++|++|++++|.+.... .+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34689999999999999887 47777 99999999999776543 678899999999999999987888899999999
Q ss_pred EEECCCCCCCCcCcccccCCCCccEEEcCCCc-CCccCccccCCCCcceEECCCCCCCCCC
Q psy11648 516 IIDLSFNEISMLTGEQFYFSFKLRILNISHNR-LRSLPRDVFSNTIIEKLDISYNQDKIRP 575 (584)
Q Consensus 516 ~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~-l~~lp~~l~~~~~L~~l~l~~n~l~~~p 575 (584)
+|++++|++++..+..+..+++|++|++++|+ ++.+| .+..+++|+.|++++|+++.++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 99999999998888889999999999999997 88887 6888899999999999999876
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.7e-15 Score=134.94 Aligned_cols=128 Identities=21% Similarity=0.353 Sum_probs=85.4
Q ss_pred ceEECCCCccccccccccccccCcccEEEccCCCCCCCChh-hHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN-FLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL 495 (584)
Q Consensus 417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 495 (584)
+.++++++.++.++... ..++++|++++|.++.++.. .+..+ ++|++|++++|++.+..+..|.++++|++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI----PLHTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCC----CTTCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCC----CCCCCEEECCCCcCCccCCccccccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 56667777666665433 23667777777776666543 35565 67777777777776666666666777777777
Q ss_pred cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
++|.+++..+..|..+++|++|++++|+++++.+..|..+++|++|++++|.++
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 777776666666666777777777777777666666666677777777777666
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=132.77 Aligned_cols=127 Identities=28% Similarity=0.337 Sum_probs=81.3
Q ss_pred ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496 (584)
Q Consensus 417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 496 (584)
+.++++++.++.++... .++++.|++++|.++.+| ..+..+ ++|++|++++|++..+++..|.++++|++|+++
T Consensus 13 ~~l~~~~~~l~~ip~~~----~~~l~~L~L~~n~i~~ip-~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI----PRDVTELYLDGNQFTLVP-KELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCC----CTTCCEEECCSSCCCSCC-GGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCC----CCCCCEEECCCCcCchhH-HHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 45666666666655432 246666666666666666 455555 666666666666666666666666666666666
Q ss_pred CcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 549 (584)
+|.++...+..|..+++|+.|++++|+++.+++..|..+++|++|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66666666666666666666666666666666666666666666666666554
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=2.8e-18 Score=178.47 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=86.5
Q ss_pred cccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648 440 YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519 (584)
Q Consensus 440 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 519 (584)
.|+.|++++|.++.+|. +..+ ++|+.|++++|++..+ |..++.+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l-~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQL-LLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGG-TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcC--cccc-ccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 47777777777777763 6666 7777777777777754 3467777777777777777776 34 6777777777777
Q ss_pred CCCCCCCcC-cccccCCCCccEEEcCCCcCCccCccccC----CCCcceEEC
Q psy11648 520 SFNEISMLT-GEQFYFSFKLRILNISHNRLRSLPRDVFS----NTIIEKLDI 566 (584)
Q Consensus 520 s~n~i~~~~-~~~~~~~~~L~~L~L~~n~l~~lp~~l~~----~~~L~~l~l 566 (584)
++|+++++. |..+..+++|+.|++++|.++++|..... +++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777777776 66777777777777777777776654432 467777753
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=3.9e-16 Score=146.52 Aligned_cols=170 Identities=20% Similarity=0.231 Sum_probs=105.4
Q ss_pred cCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEe
Q psy11648 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393 (584)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 393 (584)
+.++..++++++.++... .+..+++|+.|++++|.+..+. .+..+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 556666677777777654 3566778888888888777653 56677888888888888777643 77778888888
Q ss_pred cCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccC
Q psy11648 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF 473 (584)
Q Consensus 394 l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 473 (584)
+++|.+++.+... . ..++.|++++|.+++.+. ...+++|+.|++++|.+++++ .+..+ ++|++|++++
T Consensus 92 L~~N~l~~l~~~~-----~-~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~~~--~l~~l-~~L~~L~L~~ 159 (263)
T 1xeu_A 92 VNRNRLKNLNGIP-----S-ACLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKSIV--MLGFL-SKLEVLDLHG 159 (263)
T ss_dssp CCSSCCSCCTTCC-----C-SSCCEEECCSSCCSBSGG---GTTCTTCCEEECTTSCCCBCG--GGGGC-TTCCEEECTT
T ss_pred CCCCccCCcCccc-----c-CcccEEEccCCccCCChh---hcCcccccEEECCCCcCCCCh--HHccC-CCCCEEECCC
Confidence 8888777643211 1 455666666666555431 233555666666665555543 34444 5555555555
Q ss_pred CcccccCccccCCCcccCeeeccCcccccc
Q psy11648 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVV 503 (584)
Q Consensus 474 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 503 (584)
|++.+. ..+..+++|+.|++++|.+...
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 555544 3445555555555555555443
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=7.3e-15 Score=129.12 Aligned_cols=128 Identities=24% Similarity=0.315 Sum_probs=76.6
Q ss_pred ccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECC
Q psy11648 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520 (584)
Q Consensus 441 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls 520 (584)
.+.++++++.++.+|... +++|++|++++|++.+.++..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC----CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 345555555555555321 1556666666666665555555666666666666666665555555666666666666
Q ss_pred CCCCCCcCcccccCCCCccEEEcCCCcCCccCccc-cCCCCcceEECCCCCCC
Q psy11648 521 FNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV-FSNTIIEKLDISYNQDK 572 (584)
Q Consensus 521 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~~~~~L~~l~l~~n~l~ 572 (584)
+|+++++++..|..+++|++|++++|+++.+|... ..+++|+.|++++|+++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 66666666655566666666666666666665554 33566666666666665
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=2.7e-15 Score=133.63 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=80.5
Q ss_pred cEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEE
Q psy11648 390 VKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469 (584)
Q Consensus 390 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 469 (584)
+.++++++.++.++.... ..++.|++++|.++.++....+..+++|++|++++|.++.+++..+..+ ++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCCC------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEE
T ss_pred CEEEcCCCCcCcCccCCC------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc-ccCCEE
Confidence 556666666655543221 1456666666666665554334445666666666666666655556665 666666
Q ss_pred EccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCC
Q psy11648 470 YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM 526 (584)
Q Consensus 470 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~ 526 (584)
++++|++.+.++..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 666666666666666666666666666666666666666666666666666666653
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=127.58 Aligned_cols=126 Identities=23% Similarity=0.358 Sum_probs=98.5
Q ss_pred cEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCC
Q psy11648 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521 (584)
Q Consensus 442 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~ 521 (584)
+.++++++.++.+|... ++++++|++++|++..++ ..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~----~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI----PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCC----CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCC----CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 56788888888777432 267888888888887655 5677888888888888888877777788888888888888
Q ss_pred CCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEECCCCCCC
Q psy11648 522 NEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 522 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~l~~n~l~ 572 (584)
|+++++++..|..+++|++|+|++|+|+.+|.. +..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888888887888888888888888888887775 445688888888888775
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=3.1e-15 Score=127.40 Aligned_cols=127 Identities=22% Similarity=0.191 Sum_probs=104.3
Q ss_pred cCcccEEEccCCCCC--CCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCcc
Q psy11648 438 PIYIKSLDLSNNRIQ--EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515 (584)
Q Consensus 438 ~~~L~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 515 (584)
.++++.|++++|.++ .+| ..+..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE-GLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC-SCCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHH-HHHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 477888888888887 566 455666 8899999999988876 5678889999999999998887777777789999
Q ss_pred EEECCCCCCCCcC-cccccCCCCccEEEcCCCcCCccCc----cccCCCCcceEECCC
Q psy11648 516 IIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLRSLPR----DVFSNTIIEKLDISY 568 (584)
Q Consensus 516 ~L~ls~n~i~~~~-~~~~~~~~~L~~L~L~~n~l~~lp~----~l~~~~~L~~l~l~~ 568 (584)
+|++++|++++++ +..+..+++|++|++++|+++.+|. .+..+++|+.|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999988864 3668888999999999999988876 566778999998864
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=7e-15 Score=129.04 Aligned_cols=132 Identities=22% Similarity=0.246 Sum_probs=113.2
Q ss_pred ccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccE
Q psy11648 437 APIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQI 516 (584)
Q Consensus 437 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 516 (584)
.+++++.|++++|.++.++ . +..+.++|+.|++++|.+.+. ..+..+++|++|++++|.++...+..|..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4688999999999998875 3 444425999999999999877 57889999999999999999876666789999999
Q ss_pred EECCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCcc----ccCCCCcceEECCCCCCC
Q psy11648 517 IDLSFNEISMLTG-EQFYFSFKLRILNISHNRLRSLPRD----VFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 517 L~ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~lp~~----l~~~~~L~~l~l~~n~l~ 572 (584)
|++++|+++.+++ ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999987765 4678899999999999999999875 788899999999999765
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=9.6e-15 Score=127.20 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=84.9
Q ss_pred ccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc-ccccCCCCCcc
Q psy11648 437 APIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV-KRTFIGMPNLQ 515 (584)
Q Consensus 437 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~ 515 (584)
.+++|+.|++++|.++.+ ..+..+ ++|++|++++|++.+..+..+..+++|++|++++|.+++.. +..+..+++|+
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSCCCC-SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred hCCCCCEEeCcCCCCCCh--hhhccC-CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 356777777777777665 345555 77777777777777655555666778888888888777643 25677888888
Q ss_pred EEECCCCCCCCcCc---ccccCCCCccEEEcCCCcCCccCcc
Q psy11648 516 IIDLSFNEISMLTG---EQFYFSFKLRILNISHNRLRSLPRD 554 (584)
Q Consensus 516 ~L~ls~n~i~~~~~---~~~~~~~~L~~L~L~~n~l~~lp~~ 554 (584)
.|++++|++.++++ ..+..+++|++|++++|.+..+|..
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 88888888887776 5677888888888888888887754
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=6e-16 Score=160.93 Aligned_cols=213 Identities=17% Similarity=0.149 Sum_probs=150.7
Q ss_pred cceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc-ccCceeccchhhcCCccceee-c
Q psy11648 69 ACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ-HLGTTILKDREKLLSNLETLL-L 146 (584)
Q Consensus 69 ~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~-~n~l~~l~~~l~~~~~L~~L~-l 146 (584)
++|+ .|+|++|+++.+|..+....+ |+ .|++++|.... .+..++. .+.....|..+..+++|+.|+ +
T Consensus 349 ~~L~-~L~Ls~n~L~~Lp~~i~~l~~-L~--~L~l~~n~~l~-------~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 349 EQLF-RCELSVEKSTVLQSELESCKE-LQ--ELEPENKWCLL-------TIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp TTSS-SCCCCHHHHHHHHHHHHHHHH-HH--HHCTTCHHHHH-------HHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred ccce-eccCChhhHHhhHHHHHHHHH-HH--Hhccccchhhh-------hHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 7899 999999999999998887777 99 99997764211 1111111 222335566778888899998 6
Q ss_pred cccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccc
Q psy11648 147 RCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225 (584)
Q Consensus 147 ~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 225 (584)
+.|.+..+ +.+.++ +.+ ..+ ....|+.|++++|.++.++. +..+++|+.|++++|.+.
T Consensus 418 ~~n~~~~L------------~~l~l~~n~i-----~~l--~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 418 RAAYLDDL------------RSKFLLENSV-----LKM--EYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp GHHHHHHH------------HHHHHHHHHH-----HHH--HHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC
T ss_pred hhcccchh------------hhhhhhcccc-----ccc--CccCceEEEecCCCCCCCcC--ccccccCcEeecCccccc
Confidence 76654433 222222 100 011 12468899999999888643 888999999999999887
Q ss_pred eeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccc-cccccCCCCCcEEEcccCCCccc
Q psy11648 226 IIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIR-NYSLYNLTSLNYINLEYNKISKI 304 (584)
Q Consensus 226 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~i 304 (584)
. +|..+..+++|+.|++++|.+. .+| .+ ..+++|++|++++|.+++.. +..+..+++|++|++++|.++.+
T Consensus 477 ~---lp~~~~~l~~L~~L~Ls~N~l~--~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 477 A---LPPALAALRCLEVLQASDNALE--NVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp C---CCGGGGGCTTCCEEECCSSCCC--CCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred c---cchhhhcCCCCCEEECCCCCCC--CCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 4 4778888899999999999886 577 43 78889999999999888885 66788888899999998888877
Q ss_pred ccccccc-cccCCccEEE
Q psy11648 305 HNNLFHF-NIHKRLKEIR 321 (584)
Q Consensus 305 ~~~~~~~-~~~~~L~~L~ 321 (584)
++..... ..+++|+.|+
T Consensus 549 ~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 549 EGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCTTHHHHHCTTCSEEE
T ss_pred ccHHHHHHHHCcccCccC
Confidence 6543211 1156666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=4.9e-14 Score=123.83 Aligned_cols=130 Identities=21% Similarity=0.301 Sum_probs=108.7
Q ss_pred ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496 (584)
Q Consensus 417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 496 (584)
+.++++++.++.++... .++++.|++++|.++.++...+..+ ++|++|++++|++.++++..|..+++|++|+++
T Consensus 10 ~~l~~~~~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCSSCCTTC----CTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCccCCCCC----CCCCcEEEeCCCcccEeCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 45556666665554322 3688999999999888887778887 899999999999998888888899999999999
Q ss_pred CcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy11648 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551 (584)
Q Consensus 497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l 551 (584)
+|.+++..+..|..+++|++|++++|+++++++..+..+++|++|++++|.++..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9999988777788999999999999999998888888899999999999988743
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.52 E-value=1.6e-12 Score=129.90 Aligned_cols=339 Identities=13% Similarity=0.217 Sum_probs=194.6
Q ss_pred ccccchhhhcCCC-CCCEEEcCCCccceeecCCccccccccceEEeecccccC-CCCchhhHhhhcCCCCCEEEccCccc
Q psy11648 200 ITDLNGNLFRHLY-NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN-SNEFPYYILNKNLNTLEWLAMDNNNI 277 (584)
Q Consensus 200 ~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~l~~~~~~~~~~~L~~L~l~~~~l 277 (584)
.+.+...+|.++. .|+.+.+... ++.+ ...+|.++.+|+.+.+..+.-. -..+....| ..|.+|+.+.+..+ +
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~I--g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~~-~ 125 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEI--GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILDS-V 125 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEE--CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGTT-C
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEE--hHHHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeeccCCc-c
Confidence 3345556777774 5888888754 6666 6677888888888887765311 034555555 66777777666543 4
Q ss_pred cccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChh
Q psy11648 278 KNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTT 357 (584)
Q Consensus 278 ~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 357 (584)
+.+...++..+.+|+.+.+.. .+..++...|.. +..|+.+.+..+ ++......|.. ..|+.+.+..+- ..+...
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~--c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~ 199 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSY--CYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTN 199 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT--CTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTT
T ss_pred ceehhhhhhhhcccccccccc-eeeeecccceec--ccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccc
Confidence 555555667777777777643 344555555554 666666666543 33333333432 345555554321 112223
Q ss_pred hhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccc
Q psy11648 358 SFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437 (584)
Q Consensus 358 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~ 437 (584)
.+..+..++................+......... +........+..+.+.. .++.+ ....+..
T Consensus 200 af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ip~-~v~~i-~~~aF~~ 263 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYPAIDNVLYEKSANGDYA--------------LIRYPSQREDPAFKIPN-GVARI-ETHAFDS 263 (394)
T ss_dssp TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE--------------EEECCTTCCCSEEECCT-TEEEE-CTTTTTT
T ss_pred hhhhccccceecccccccccccceeeccccccccc--------------ccccccccccceEEcCC-cceEc-ccceeee
Confidence 34444444444443322221100000000000000 00001111222233221 11222 1233456
Q ss_pred cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII 517 (584)
Q Consensus 438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 517 (584)
|..|+.+.+... ...+....|..+ ..|+.+.+. +.+..++..+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+
T Consensus 264 c~~L~~i~lp~~-~~~I~~~aF~~c-~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 264 CAYLASVKMPDS-VVSIGTGAFMNC-PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp CSSCCEEECCTT-CCEECTTTTTTC-TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccEEecccc-cceecCcccccc-cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 788999988754 345666778887 999999996 5677788889999999999999764 555666789999999999
Q ss_pred ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648 518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK 572 (584)
Q Consensus 518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~ 572 (584)
.+.. .++.+...+|.+|++|+.+++.++... + ..++.+..|+.+.+..|.+.
T Consensus 340 ~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 340 AIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp EECT-TCCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC-----------
T ss_pred EECc-ccCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCCEE
Confidence 9965 488888899999999999999998543 2 35677889999998877553
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.3e-14 Score=123.49 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=101.3
Q ss_pred hCCCcEEEccCCccc-ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEE
Q psy11648 463 ADSLRKLYLDFNEIK-HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRIL 541 (584)
Q Consensus 463 ~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L 541 (584)
++++++|++++|.+. +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 378999999999998 45556788999999999999999887 678999999999999999999778878789999999
Q ss_pred EcCCCcCCccC--ccccCCCCcceEECCCCCCCCCCC
Q psy11648 542 NISHNRLRSLP--RDVFSNTIIEKLDISYNQDKIRPG 576 (584)
Q Consensus 542 ~L~~n~l~~lp--~~l~~~~~L~~l~l~~n~l~~~p~ 576 (584)
++++|+++.+| ..+..+++|+.|++++|+++.+|.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999999875 788889999999999999998876
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=4.9e-15 Score=159.10 Aligned_cols=187 Identities=19% Similarity=0.149 Sum_probs=89.2
Q ss_pred hcccccccccccccccccccceeeeecCCceeec---------CCccccccccceeeEEEecCccccccccccccccccc
Q psy11648 26 QHLGTTILKGDQLQGIFNSKLRELEITGKDLKFI---------DPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENI 96 (584)
Q Consensus 26 ~~Lr~L~l~~~~l~~l~~~~L~~L~ls~n~~~~~---------~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L 96 (584)
..++.|+++++.+..++...++.++|+.+.+.+. .++.+..+ ..|+ +|+|++|.+..+|..+|.... |
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l-~~L~-~L~Ls~n~l~~l~~~~~~l~~-L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDD-QLWH-ALDLSNLQIFNISANIFKYDF-L 249 (727)
T ss_dssp -------------------------------------------------CC-CCCC-EEECTTSCCSCCCGGGGGCCS-C
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccC-CCCc-EEECCCCCCCCCChhhcCCCC-C
Confidence 4566667777777776665555566665554442 24455565 6777 888888887777777775555 8
Q ss_pred ceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCC
Q psy11648 97 EQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNN 176 (584)
Q Consensus 97 ~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~ 176 (584)
+ +|+|++|.|+. +|..+.++++|++|+|++|.++.+
T Consensus 250 ~--~L~Ls~N~l~~--------------------lp~~~~~l~~L~~L~Ls~N~l~~l---------------------- 285 (727)
T 4b8c_D 250 T--RLYLNGNSLTE--------------------LPAEIKNLSNLRVLDLSHNRLTSL---------------------- 285 (727)
T ss_dssp S--CCBCTTSCCSC--------------------CCGGGGGGTTCCEEECTTSCCSSC----------------------
T ss_pred C--EEEeeCCcCcc--------------------cChhhhCCCCCCEEeCcCCcCCcc----------------------
Confidence 8 88888777652 344456667788888888877754
Q ss_pred CcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccc-cceEEeecccccCCCCc
Q psy11648 177 EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFE-KLQLLEISFSLFNSNEF 255 (584)
Q Consensus 177 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~l 255 (584)
|..+. .+++|+.|++++|.+..++. .|..+++|++|+|++|.+.+. .+..+.... .+..+++++|.+. +.+
T Consensus 286 ---p~~~~-~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~~~~~~l~l~~N~l~-~~~ 357 (727)
T 4b8c_D 286 ---PAELG-SCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQ--FLKILTEKSVTGLIFYLRDNRPE-IPL 357 (727)
T ss_dssp ---CSSGG-GGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSH--HHHHHHHHHHHHHHHHHHHCCCC-CCC
T ss_pred ---Chhhc-CCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCC--ChHHHhhcchhhhHHhhccCccc-CcC
Confidence 22333 67778888888887765533 477778888888888777654 444444331 1223556666654 333
Q ss_pred hhhHhhhcCCCCCEEEccCc
Q psy11648 256 PYYILNKNLNTLEWLAMDNN 275 (584)
Q Consensus 256 ~~~~~~~~~~~L~~L~l~~~ 275 (584)
| ..|+.|+++.|
T Consensus 358 p--------~~l~~l~l~~n 369 (727)
T 4b8c_D 358 P--------HERRFIEINTD 369 (727)
T ss_dssp C--------CC---------
T ss_pred c--------cccceeEeecc
Confidence 3 23455555554
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=1.4e-12 Score=130.30 Aligned_cols=310 Identities=17% Similarity=0.235 Sum_probs=180.2
Q ss_pred CCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCc---cceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648 189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK---LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265 (584)
Q Consensus 189 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~ 265 (584)
.|+.+.+... ++.+...+|.+|.+|+.+.+..+. +..+ ...+|..+.+|+.+.+..+. ..++...| ..+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~I--g~~aF~~c~~L~~i~~~~~~---~~I~~~aF-~~c~ 137 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKI--GRQAFMFCSELTDIPILDSV---TEIDSEAF-HHCE 137 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEE--CTTTTTTCTTCCBCGGGTTC---SEECTTTT-TTCT
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEe--chhhchhcccceeeccCCcc---ceehhhhh-hhhc
Confidence 4677776543 555666667777777777775542 4444 45667777777766665442 24555555 6777
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 345 (584)
+|+.+.+.. .+..+...++..+..|+.+.+.++ +..+....|. ...|+.+.+... ........+..|..+....
T Consensus 138 ~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~---~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 138 ELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT---GTALTQIHIPAK-VTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT---TCCCSEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccc-eeeeecccceecccccccccccce-eeEecccccc---ccceeEEEECCc-ccccccchhhhccccceec
Confidence 777777754 344455556777777777777543 5666666665 456777777654 2333345566777777666
Q ss_pred ccCCcCCCcChhhh-------------ccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhccccc
Q psy11648 346 LSYNLLKSIKTTSF-------------KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITS 412 (584)
Q Consensus 346 l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 412 (584)
.............+ .....+..+.+. +.+..+...+|..|..|+.+.+.++. ..+...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~------- 282 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-VSIGTG------- 282 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC-CEECTT-------
T ss_pred ccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc-ceecCc-------
Confidence 55443222111111 111222333332 12333334556666666666654332 122222
Q ss_pred CCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCe
Q psy11648 413 KQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLEL 492 (584)
Q Consensus 413 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 492 (584)
.+..++.|+.+.+. +.++.++...|.++ .+|+++.+..+ ++.+...+|.+|.+|+.
T Consensus 283 ---------------------aF~~c~~L~~i~l~-~~i~~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 283 ---------------------AFMNCPALQDIEFS-SRITELPESVFAGC-ISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp ---------------------TTTTCTTCCEEECC-TTCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ---------------------ccccccccccccCC-CcccccCceeecCC-CCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 23346777777775 34667777778877 88888888753 66677778888888888
Q ss_pred eeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcC
Q psy11648 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548 (584)
Q Consensus 493 L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l 548 (584)
+.+..+ ++.+...+|.+|.+|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 888654 555556778888888888888765332 3466778888887776643
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=6.8e-14 Score=122.67 Aligned_cols=110 Identities=19% Similarity=0.121 Sum_probs=98.1
Q ss_pred CCCcEEEccCCcccccCccccCCC-cccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEE
Q psy11648 464 DSLRKLYLDFNEIKHLDATAFGNL-DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542 (584)
Q Consensus 464 ~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~ 542 (584)
.+|++|++++|++..++ . +..+ ++|++|++++|.+++. ..+..+++|++|++++|+++++++..|..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 88999999999998763 3 4444 4999999999999986 6789999999999999999999877778999999999
Q ss_pred cCCCcCCccCc--cccCCCCcceEECCCCCCCCCCCC
Q psy11648 543 ISHNRLRSLPR--DVFSNTIIEKLDISYNQDKIRPGR 577 (584)
Q Consensus 543 L~~n~l~~lp~--~l~~~~~L~~l~l~~n~l~~~p~~ 577 (584)
+++|+++.+|. .+..+++|+.|++++|+++.+|..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 131 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence 99999999987 788889999999999999988764
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=5.4e-13 Score=116.31 Aligned_cols=109 Identities=21% Similarity=0.303 Sum_probs=88.1
Q ss_pred ccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECC
Q psy11648 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520 (584)
Q Consensus 441 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls 520 (584)
-+.++++++.++.+|... +++|++|++++|++.++++..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888888888533 2778888888888888877788888888888888888887766667888888888888
Q ss_pred CCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy11648 521 FNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553 (584)
Q Consensus 521 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~ 553 (584)
+|+++++++..|..+++|++|++++|.+...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 888888887778888888888888888876554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=5.9e-13 Score=115.67 Aligned_cols=109 Identities=22% Similarity=0.286 Sum_probs=88.5
Q ss_pred cccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648 440 YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519 (584)
Q Consensus 440 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 519 (584)
+.+.++++++.++.+|... ++++++|++++|++.++++..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4578888888888888533 277888888888888887778888888888888888888777777788888888888
Q ss_pred CCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552 (584)
Q Consensus 520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp 552 (584)
++|+++++++..|..+++|++|++++|.++..+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 888888888877888888888888888777443
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=1.5e-13 Score=147.57 Aligned_cols=176 Identities=23% Similarity=0.254 Sum_probs=86.3
Q ss_pred CCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccccc--------ccccccccCcccEEEccCCCCCCCChhh
Q psy11648 387 PNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY--------ENDKKQAPIYIKSLDLSNNRIQEVPVNF 458 (584)
Q Consensus 387 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--------~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 458 (584)
+.++.+++.++.+....... ++.++++.+.+.... ....+..++.|+.|++++|.+..++...
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~---------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 243 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL---------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI 243 (727)
T ss_dssp ----------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG
T ss_pred CccceEEeeCCCCCcchhhH---------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh
Confidence 56778888887776643322 233333333332211 1112334566777777777777776555
Q ss_pred HHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCc
Q psy11648 459 LQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKL 538 (584)
Q Consensus 459 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L 538 (584)
+ .+ ++|++|+|++|.+..+ +..|..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++.++. .|..+++|
T Consensus 244 ~-~l-~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L 318 (727)
T 4b8c_D 244 F-KY-DFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNL 318 (727)
T ss_dssp G-GC-CSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTC
T ss_pred c-CC-CCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCc
Confidence 4 44 7777777777777644 345667777777777777776 446667777777777777777765543 36677777
Q ss_pred cEEEcCCCcCCc-cCccccCC-CCcceEECCCCCCC-CCCC
Q psy11648 539 RILNISHNRLRS-LPRDVFSN-TIIEKLDISYNQDK-IRPG 576 (584)
Q Consensus 539 ~~L~L~~n~l~~-lp~~l~~~-~~L~~l~l~~n~l~-~~p~ 576 (584)
++|+|++|.|++ +|..+... ..+..+++++|.++ .+|.
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 777777777774 33333332 22234567777776 4443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.3e-12 Score=113.59 Aligned_cols=106 Identities=24% Similarity=0.295 Sum_probs=70.0
Q ss_pred ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496 (584)
Q Consensus 417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 496 (584)
+.++++++.++.++... .++++.|++++|.++.+++..|..+ ++|++|++++|++.++++..|..+++|++|+++
T Consensus 12 ~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCc-ccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 56666666666655433 2566777777777766665666666 667777777777766666666667777777777
Q ss_pred CcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527 (584)
Q Consensus 497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 527 (584)
+|.+....+..|..+++|++|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7777666555666677777777777766543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2e-12 Score=112.73 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=69.4
Q ss_pred ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496 (584)
Q Consensus 417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 496 (584)
+.++++++.++.++... .+++++|++++|.++.+++..+..+ ++|++|++++|++.++++..|..+++|++|+++
T Consensus 15 ~~l~~~~n~l~~iP~~~----~~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI----PTDKQRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCCc----CCCCcEEEeCCCCccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 45666666666655433 2566777777777666665666666 667777777777766666666666777777777
Q ss_pred CcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527 (584)
Q Consensus 497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 527 (584)
+|.+....+..|..+++|+.|++++|++...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7776665555566677777777777766543
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.35 E-value=1.7e-10 Score=114.65 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=66.4
Q ss_pred cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII 517 (584)
Q Consensus 438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 517 (584)
+..++.+.+..+ +..+....+..+ ..|+.+.+..+ +..+...+|.++.+|+.+.+..+ +......+|.+|++|+.+
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 344555544332 333333444444 55555555433 34444445555555555555432 333333445555555555
Q ss_pred ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccc-cCCCCcceEECCCCCCCCCCCCCCCC
Q psy11648 518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV-FSNTIIEKLDISYNQDKIRPGRESNP 581 (584)
Q Consensus 518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~~~~~L~~l~l~~n~l~~~p~~~~~~ 581 (584)
.+.++.++.+...+|.+|.+|+.+.|.++ ++.|+... ..|++|+.+.+..+ ++.|....|.-
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 55555555555555555555555555432 44444332 23355555555433 44555554443
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.34 E-value=1.5e-10 Score=114.94 Aligned_cols=310 Identities=15% Similarity=0.228 Sum_probs=151.7
Q ss_pred hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~ 265 (584)
...+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++.+ ...+|..+ +|+.+.+..+ + ..+....| ..+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I--g~~aF~~c-~l~~i~~~~~-l--~~I~~~aF-~~~- 113 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSI--GDGAFADT-KLQSYTGMER-V--KKFGDYVF-QGT- 113 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEE--CTTTTTTC-CCCEEEECTT-C--CEECTTTT-TTC-
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEe--chhhhcCC-CCceEECCce-e--eEecccee-ccC-
Confidence 567788888864 466677777888888888888654 5555 56677766 5666666543 1 24455554 333
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345 (584)
Q Consensus 266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 345 (584)
+|+.+.+..+ ++.+...++..+ +++.+.+.. .++.+....+.. +..++.+.+...............
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~--~~~l~~~~~~~~~~~~~~~~~~~~-------- 180 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYK--AENLEKIEVSSNNKNYVAENYVLY-------- 180 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTT--CTTCCEEEECTTCSSEEEETTEEE--------
T ss_pred CcccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcc--cccccccccccccceeecccceec--------
Confidence 6777776553 333333344443 354444432 233444444433 455554444432211110000000
Q ss_pred ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425 (584)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~ 425 (584)
.. .......+..+..+..+.+... ........+..+..++.+.+..+ +..+....|
T Consensus 181 -~~---~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f------------------ 236 (379)
T 4h09_A 181 -NK---NKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAF------------------ 236 (379)
T ss_dssp -ET---TSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTT------------------
T ss_pred -cc---ccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccc------------------
Confidence 00 0000011222233333333221 11222233444455555554332 222222222
Q ss_pred cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505 (584)
Q Consensus 426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 505 (584)
..+..|+.+.+..+ ++.+....|..+ .+|+.+.+.. .+..+...+|.+|.+|+.+.+.++.++.+..
T Consensus 237 ----------~~~~~L~~i~lp~~-v~~I~~~aF~~~-~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 237 ----------YGMKALDEIAIPKN-VTSIGSFLLQNC-TALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp ----------TTCSSCCEEEECTT-CCEECTTTTTTC-TTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred ----------cCCccceEEEcCCC-ccEeCcccccee-ehhccccccc-cceeccccccccccccccccccccccceehh
Confidence 22445555555443 444444455554 5566666543 3444455556666666666666655555555
Q ss_pred cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC
Q psy11648 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557 (584)
Q Consensus 506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~ 557 (584)
.+|.+|.+|+.+.+.. .++.+...+|.+|.+|+++.+..+ ++.|....+.
T Consensus 304 ~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 5666666666666653 355555666666666666666543 5555444443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.9e-13 Score=134.49 Aligned_cols=186 Identities=18% Similarity=0.127 Sum_probs=125.5
Q ss_pred hhhccccccccccccccccc-----------ccceeeeecCCceeecCCccccccccceeeEEEecCccccccc-----c
Q psy11648 24 KLQHLGTTILKGDQLQGIFN-----------SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELP-----S 87 (584)
Q Consensus 24 ~l~~Lr~L~l~~~~l~~l~~-----------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~-----~ 87 (584)
..++|++|++++|.++.... ++|++|++++|.+.+.....+.....+|+ +|+|++|.++..+ .
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~-~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR-KLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEE-EEECCSSCCCHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhcc-HhhcCCCCCCHHHHHHHHH
Confidence 45678888999999886332 58999999999987755444443336899 9999999987432 2
Q ss_pred cccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHH
Q psy11648 88 GLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIV 167 (584)
Q Consensus 88 ~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~ 167 (584)
.+......|+ +|+|++|.++......++ ..+..+++|++|++++|.+++.+...++.
T Consensus 149 ~L~~~~~~L~--~L~Ls~n~l~~~~~~~l~---------------~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~------ 205 (372)
T 3un9_A 149 LLLHDQCQIT--TLRLSNNPLTAAGVAVLM---------------EGLAGNTSVTHLSLLHTGLGDEGLELLAA------ 205 (372)
T ss_dssp HHHSTTCCCC--EEECCSSCCHHHHHHHHH---------------HHHHTCSSCCEEECTTSSCHHHHHHHHHH------
T ss_pred HHHhcCCccc--eeeCCCCCCChHHHHHHH---------------HHHhcCCCcCEEeCCCCCCCcHHHHHHHH------
Confidence 2223344599 999999998765554333 34567789999999999888764433221
Q ss_pred HhhcCCCCCCcccchhHhhccCCcEEEcCCCccccc----chhhhcCCCCCCEEEcCCCccceeecCCcccccc---c--
Q psy11648 168 KAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL----NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVF---E-- 238 (584)
Q Consensus 168 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l---~-- 238 (584)
.+. ..++|+.|++++|.+++. ....+..+++|++|++++|.+.+. ....+..+ .
T Consensus 206 --------------~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~--g~~~L~~~~~~~~~ 268 (372)
T 3un9_A 206 --------------QLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE--GRQVLRDLGGAAEG 268 (372)
T ss_dssp --------------HGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH--HHHHHHHCC-----
T ss_pred --------------HHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH--HHHHHHHHhcCCCc
Confidence 222 567899999999998863 334556778999999999988654 23333333 1
Q ss_pred cceEEe--eccccc
Q psy11648 239 KLQLLE--ISFSLF 250 (584)
Q Consensus 239 ~L~~L~--l~~~~~ 250 (584)
.|+.+. +..+.+
T Consensus 269 ~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 269 GARVVVSLTEGTAV 282 (372)
T ss_dssp -CEEECCCC----C
T ss_pred cchhhHhhhcCCcc
Confidence 166666 555544
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=6.4e-13 Score=130.72 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=109.6
Q ss_pred CCCCcEEecCCCCCCCCChhhhcccc--cCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHh-
Q psy11648 386 LPNLVKLDLQDNKLKDFNLNVFSNIT--SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF- 462 (584)
Q Consensus 386 ~~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~- 462 (584)
.+.|+.|++++|.++......+.... ....++.|++++|.+++.........+++|+.|++++|.+++.....+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35677777777776655444433321 124677777777776654433333345678899999998875444444321
Q ss_pred ---hCCCcEEEccCCcccccC----ccccCCCcccCeeeccCccccccc----ccccCCCCCccEEECCCCCCCCcCc--
Q psy11648 463 ---ADSLRKLYLDFNEIKHLD----ATAFGNLDVLELLSLEHNNIAVVV----KRTFIGMPNLQIIDLSFNEISMLTG-- 529 (584)
Q Consensus 463 ---~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~ls~n~i~~~~~-- 529 (584)
.++|++|++++|.++... ...+..+++|++|++++|.+.+.. ...+..+++|++|++++|.+++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 267899999999886532 233466788999999998887632 4556777889999999998875433
Q ss_pred --ccccCCCCccEEEcCCCcCC
Q psy11648 530 --EQFYFSFKLRILNISHNRLR 549 (584)
Q Consensus 530 --~~~~~~~~L~~L~L~~n~l~ 549 (584)
..+..++.|++|+|++|.|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 33445688999999999887
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=4.8e-14 Score=126.32 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=38.5
Q ss_pred CcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc-cccCCCCCccEE
Q psy11648 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQII 517 (584)
Q Consensus 439 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L 517 (584)
++|++|++++|.++.+| ..+..+ ++|++|++++|++.+++ .+..+++|++|++++|.+....+ ..+..+++|++|
T Consensus 70 ~~L~~L~l~~n~l~~l~-~~~~~~-~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 70 ENLRILSLGRNLIKKIE-NLDAVA-DTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp TTCCEEEEEEEEECSCS-SHHHHH-HHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCEEECCCCCccccc-chhhcC-CcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 44555555555444444 233333 44555555555544432 24444455555555555443221 234445555555
Q ss_pred ECCCCCCCC
Q psy11648 518 DLSFNEISM 526 (584)
Q Consensus 518 ~ls~n~i~~ 526 (584)
++++|++.+
T Consensus 146 ~l~~N~l~~ 154 (198)
T 1ds9_A 146 LLAGNPLYN 154 (198)
T ss_dssp EECSCHHHH
T ss_pred EecCCcccc
Confidence 555554443
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=4e-13 Score=120.28 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=85.5
Q ss_pred hccCCcEEEcCCCcccccchh------hhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648 186 LLSNLETLLLRCNKITDLNGN------LFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI 259 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 259 (584)
....++.++++.+.+.+..+. .+..+++|++|++++|.+.++ + .+..+++|+.|++++|.+. .+|..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l---~-~~~~l~~L~~L~l~~n~l~--~l~~~~ 89 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---S-SLSGMENLRILSLGRNLIK--KIENLD 89 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC---C-CHHHHTTCCEEEEEEEEEC--SCSSHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc---c-ccccCCCCCEEECCCCCcc--cccchh
Confidence 345555555555555544333 677788888888888777654 4 6777777888888877774 566544
Q ss_pred hhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCccccc-ccccccccCCccEEEcCCCccccc
Q psy11648 260 LNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN-NLFHFNIHKRLKEIRLSNNYLELI 330 (584)
Q Consensus 260 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~-~~~~~~~~~~L~~L~l~~~~~~~~ 330 (584)
..+++|++|++++|.+++++ .+..+++|++|++++|.++.++. ..+.. +++|++|++++|.+...
T Consensus 90 --~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~--l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 90 --AVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAA--LDKLEDLLLAGNPLYND 155 (198)
T ss_dssp --HHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTT--TTTCSEEEECSCHHHHH
T ss_pred --hcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhc--CCCCCEEEecCCccccc
Confidence 45677777777777777654 46666777777777777665443 12222 56666666666666544
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4.8e-11 Score=117.10 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=85.7
Q ss_pred cEEEccCC-CCCCCChhhHHHhhCCCcEEEccC-CcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648 442 KSLDLSNN-RIQEVPVNFLQTFADSLRKLYLDF-NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519 (584)
Q Consensus 442 ~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 519 (584)
..++.+++ .++.+|. +..+ ++|++|+|++ |.+.++++..|.++++|++|+|++|.+.+..+..|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 34677777 7888885 6666 7888888886 8888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRS 550 (584)
Q Consensus 520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 550 (584)
++|+++++++..|..++ |+.|+|.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88888888877776665 8888888888774
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.6e-10 Score=113.34 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=66.2
Q ss_pred eEECCCC-ccccccccccccccCcccEEEccC-CCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648 418 NLNLSNN-YITNLYENDKKQAPIYIKSLDLSN-NRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL 495 (584)
Q Consensus 418 ~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 495 (584)
.++.+++ .++.++. ....++|+.|++++ |.++.++...|..+ ++|+.|+|++|++.++++..|.++++|++|+|
T Consensus 12 ~v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3455555 5666554 23355677777764 66666666666666 67777777777776666666666777777777
Q ss_pred cCcccccccccccCCCCCccEEECCCCCCC
Q psy11648 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525 (584)
Q Consensus 496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~ 525 (584)
++|.+....+..|..++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77776665555555554 777777776665
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=2.1e-08 Score=87.96 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=8.6
Q ss_pred cCCccceeeccccccccc
Q psy11648 137 LLSNLETLLLRCNKITDL 154 (584)
Q Consensus 137 ~~~~L~~L~l~~n~i~~~ 154 (584)
..++|++|++++|.|.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HCSSCCEEECCSSCCCHH
T ss_pred hCCCcCEEECcCCcCCHH
Confidence 334455555555544443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=7e-09 Score=91.03 Aligned_cols=119 Identities=12% Similarity=0.047 Sum_probs=89.3
Q ss_pred cccccchhhhcccccccccc-cccccc-----c-----ccceeeeecCCceeecCCcccccc---ccceeeEEEecCccc
Q psy11648 17 TLYSNVTKLQHLGTTILKGD-QLQGIF-----N-----SKLRELEITGKDLKFIDPSAFDNI---DACYDLTLKITNTQI 82 (584)
Q Consensus 17 ~~~~~l~~l~~Lr~L~l~~~-~l~~l~-----~-----~~L~~L~ls~n~~~~~~~~~~~~~---~~~L~~~L~ls~n~i 82 (584)
++...+...+.|++|++++| .+.+-. . ++|++|++++|.+.+.....+... .++|+ +|+|++|.|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~-~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK-SLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC-EEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC-EEECcCCcC
Confidence 34445677889999999999 887521 1 889999999999987544333322 36799 999999998
Q ss_pred cc-----ccccccccccccceeeeec--CCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccc
Q psy11648 83 EE-----LPSGLFDKIENIEQMTLDL--SHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDL 154 (584)
Q Consensus 83 ~~-----l~~~~~~~~~~L~~~~L~l--s~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~ 154 (584)
+. +...+..+.. |+ +|+| ++|.++......++. .+...++|++|++++|.+...
T Consensus 106 ~~~g~~~l~~~L~~n~~-L~--~L~L~~~~N~i~~~g~~~l~~---------------~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 106 SGSGILALVEALQSNTS-LI--ELRIDNQSQPLGNNVEMEIAN---------------MLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp CHHHHHHHHHGGGGCSS-CC--EEECCCCSSCCCHHHHHHHHH---------------HHHHCSSCCEEECCCSSHHHH
T ss_pred CHHHHHHHHHHHHhCCC-ce--EEEecCCCCCCCHHHHHHHHH---------------HHHhCCCcCEEeccCCCCChH
Confidence 83 4555555555 99 9999 889998766655543 366778999999999987654
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=1.3e-07 Score=92.00 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=29.6
Q ss_pred CCcccCeeeccCccccccc----ccccCCCCCccEEECCCCCCCCcCcccccC-CCCccEEEcCCCc
Q psy11648 486 NLDVLELLSLEHNNIAVVV----KRTFIGMPNLQIIDLSFNEISMLTGEQFYF-SFKLRILNISHNR 547 (584)
Q Consensus 486 ~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~~L~~L~L~~n~ 547 (584)
.+++|++|+++.|.+.+.. +..+..+++|+.|++++|.+++.....+.. + ..++++++++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3556666666666555431 222234566666666666655332222221 1 2445665554
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=2.7e-07 Score=89.71 Aligned_cols=82 Identities=17% Similarity=0.056 Sum_probs=47.6
Q ss_pred hccCCcEEEcCCCccc---------ccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCch
Q psy11648 186 LLSNLETLLLRCNKIT---------DLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256 (584)
Q Consensus 186 ~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~ 256 (584)
.+++|+.|.+.+.... ..+...+..+++|++|+++++.-.. .+. + .+++|++|++..|.+. ....
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~-~~~l 210 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLP-DSVV 210 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCC-HHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCC-hHHH
Confidence 5788888888654321 1233456677888888887762111 122 2 2677888888777654 2211
Q ss_pred hhHhhhcCCCCCEEEcc
Q psy11648 257 YYILNKNLNTLEWLAMD 273 (584)
Q Consensus 257 ~~~~~~~~~~L~~L~l~ 273 (584)
..+....+|+|++|+|+
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 22211357778887774
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=1.5e-07 Score=80.17 Aligned_cols=85 Identities=9% Similarity=0.011 Sum_probs=40.0
Q ss_pred CCcEEEccCCcccccCccccCCCcccCeeeccCcc-cccccccccCC----CCCccEEECCCCC-CCCcCcccccCCCCc
Q psy11648 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN-IAVVVKRTFIG----MPNLQIIDLSFNE-ISMLTGEQFYFSFKL 538 (584)
Q Consensus 465 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~----~~~L~~L~ls~n~-i~~~~~~~~~~~~~L 538 (584)
.|++|++++|.++......+.+|++|++|++++|. +++..-..+.. +++|++|++++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333334455555555555553 44332222332 2345555555553 553333344455666
Q ss_pred cEEEcCCC-cCC
Q psy11648 539 RILNISHN-RLR 549 (584)
Q Consensus 539 ~~L~L~~n-~l~ 549 (584)
++|++++| +++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 66666665 344
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=5.1e-07 Score=76.81 Aligned_cols=82 Identities=11% Similarity=-0.003 Sum_probs=67.6
Q ss_pred cccCeeeccCcccccccccccCCCCCccEEECCCCC-CCCcCcccccCC----CCccEEEcCCC-cCC--ccCccccCCC
Q psy11648 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE-ISMLTGEQFYFS----FKLRILNISHN-RLR--SLPRDVFSNT 559 (584)
Q Consensus 488 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~----~~L~~L~L~~n-~l~--~lp~~l~~~~ 559 (584)
..|++||+++|.+++..-..+.+|++|++|+|++|. +++..-..+..+ ++|++|+|++| +|+ ++. .+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 579999999999988766778999999999999995 775544555553 57999999999 688 353 456789
Q ss_pred CcceEECCCCC
Q psy11648 560 IIEKLDISYNQ 570 (584)
Q Consensus 560 ~L~~l~l~~n~ 570 (584)
+|+.|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999996
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=1e-06 Score=81.10 Aligned_cols=80 Identities=25% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCCcccCeeeccCcccccc--cccccCCCCCccEEECCCCCCCCcC-cccccCCCCccEEEcCCCcCCc-cCc-------
Q psy11648 485 GNLDVLELLSLEHNNIAVV--VKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLRS-LPR------- 553 (584)
Q Consensus 485 ~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~ls~n~i~~~~-~~~~~~~~~L~~L~L~~n~l~~-lp~------- 553 (584)
.++++|++|+|++|.+.+. ++..+..+++|+.|+|++|++.++. ...+..+ +|++|+|++|.+.. +|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 3466777777777777663 3344556777777777777776551 1222223 67777777777663 331
Q ss_pred cccCCCCcceEE
Q psy11648 554 DVFSNTIIEKLD 565 (584)
Q Consensus 554 ~l~~~~~L~~l~ 565 (584)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244456776665
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=8e-07 Score=77.15 Aligned_cols=105 Identities=10% Similarity=0.115 Sum_probs=74.1
Q ss_pred CccccCCC-ccceeccccccccchhhhccccccccccccccccc----------ccceeeeecCCceeecCCcccccc--
Q psy11648 1 MTLDLSHN-KLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN----------SKLRELEITGKDLKFIDPSAFDNI-- 67 (584)
Q Consensus 1 ~~l~ls~~-~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~----------~~L~~L~ls~n~~~~~~~~~~~~~-- 67 (584)
++|+|++| +|.+..+.++..++..-+.|+.|+|++|+|.+..+ ..|++|+|++|.|.+....++...
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~ 123 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence 35788885 88888888888888888888888888888886332 788888888888877655443321
Q ss_pred -ccceeeEEEecCc---ccc-----cccccccccccccceeeeecCCCcee
Q psy11648 68 -DACYDLTLKITNT---QIE-----ELPSGLFDKIENIEQMTLDLSHNKLS 109 (584)
Q Consensus 68 -~~~L~~~L~ls~n---~i~-----~l~~~~~~~~~~L~~~~L~ls~~~l~ 109 (584)
...|+ +|+|+++ .++ .+.+.+..+.. |+ .|+++.+.+.
T Consensus 124 ~N~tL~-~L~L~n~~~~~ig~~g~~~ia~aL~~N~t-L~--~L~l~~~~~g 170 (197)
T 1pgv_A 124 VTQSIV-EFKADNQRQSVLGNQVEMDMMMAIEENES-LL--RVGISFASME 170 (197)
T ss_dssp TTCCCS-EEECCCCSSCCCCHHHHHHHHHHHHHCSS-CC--EEECCCCCHH
T ss_pred hCCcee-EEECCCCcCcCcCHHHHHHHHHHHHhCCC-cC--eEeccCCCcc
Confidence 35688 8888765 334 24444555555 88 8888877554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.92 E-value=5.3e-06 Score=71.98 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=10.7
Q ss_pred hhcCCccceeecccccccccc
Q psy11648 135 EKLLSNLETLLLRCNKITDLN 155 (584)
Q Consensus 135 l~~~~~L~~L~l~~n~i~~~~ 155 (584)
+...+.|++|+|++|.|.+.+
T Consensus 94 L~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 94 IETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCccCeEecCCCcCCHHH
Confidence 334455555555555555443
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.88 E-value=8e-06 Score=75.12 Aligned_cols=78 Identities=22% Similarity=0.141 Sum_probs=45.8
Q ss_pred CCCcEEEccCCcccccC--ccccCCCcccCeeeccCcccccc-cccccCCCCCccEEECCCCCCCCcCc-------cccc
Q psy11648 464 DSLRKLYLDFNEIKHLD--ATAFGNLDVLELLSLEHNNIAVV-VKRTFIGMPNLQIIDLSFNEISMLTG-------EQFY 533 (584)
Q Consensus 464 ~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~-------~~~~ 533 (584)
++|++|+|++|++.++. +..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|.+.+..+ ..+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence 67777777777776543 23445667777777777776654 11223333 67777777777664222 2344
Q ss_pred CCCCccEEE
Q psy11648 534 FSFKLRILN 542 (584)
Q Consensus 534 ~~~~L~~L~ 542 (584)
.+|+|+.|+
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 566776664
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.87 E-value=0.00069 Score=54.81 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=34.3
Q ss_pred eeeecCCcee--ecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCcee
Q psy11648 48 ELEITGKDLK--FIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLS 109 (584)
Q Consensus 48 ~L~ls~n~~~--~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~ 109 (584)
.++.++++++ .++.. + ..+++ +|+|++|+|+.++.++|....+|+ +|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-l---p~~l~-~L~Ls~N~l~~l~~~~f~~l~~L~--~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-F---PVDTT-ELVLTGNNLTALPPGLLDALPALR--TAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-C---CTTCS-EEECTTSCCSSCCTTTGGGCTTCC--EEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-C---CcCCC-EEECCCCcCCccChhhhhhccccC--EEEecCCCee
Confidence 3455555555 33322 2 23566 777777777777777777766677 7777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.002 Score=52.06 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=48.2
Q ss_pred ccccccccccc--cccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccc
Q psy11648 29 GTTILKGDQLQ--GIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIE 83 (584)
Q Consensus 29 r~L~l~~~~l~--~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~ 83 (584)
++++++++.++ .+|. +++++|+|++|.|+.+....|..+ ++|+ +|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l-~~L~-~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDAL-PALR-TAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGC-TTCC-EEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhc-cccC-EEEecCCCee
Confidence 36799999999 8887 799999999999999999999998 8999 9999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.76 E-value=1.8 Score=32.52 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=22.4
Q ss_pred cccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCC
Q psy11648 475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521 (584)
Q Consensus 475 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~ 521 (584)
.++.+...+|.+|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455555555555555442 2223334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.43 E-value=5.1 Score=29.95 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=22.0
Q ss_pred CCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccC
Q psy11648 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497 (584)
Q Consensus 451 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 497 (584)
++.+....|.++ .+|+++.|..+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c-~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGN-TVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTC-TTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCC-CCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455554 55555555432 3344444555555555555543
Done!