RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11648
(584 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 65.6 bits (160), Expect = 4e-11
Identities = 127/469 (27%), Positives = 201/469 (42%), Gaps = 40/469 (8%)
Query: 100 TLDLSHNKLS--VLNMATLYSNVTKLQHLGTTILKDREKL----LSNLETLLLRCNKITD 153
TLDLS+N LS + N +S++ K+ LG +L + L++LE L L N++
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSL-KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV- 201
Query: 154 LNGNLFRHL--QKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHL 211
G + R L KS+ NN ++ L++L L L N +T + +L
Sbjct: 202 --GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259
Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS-LFNSNEFPYYILNKNLNTLEWL 270
NLQ L L NKL S +F +L+ + S S E P ++ L LE L
Sbjct: 260 KNLQYLFLYQNKLSGPIPPS----IFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEIL 313
Query: 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLEL 329
+ +NN +L +L L + L NK S +I NL H L + LS N L
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL---GKHNNLTVLDLSTNNLTG 370
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
+ + L + L N L+ S ++ + L N P+ F LP +
Sbjct: 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430
Query: 390 VKLDLQDNKLKDFNLNVFSNITSKQTPMN----LNLS-NNYITNLYENDKKQAPIYIKSL 444
LD+ +N L+ I S++ M L+L+ N + L ++ + +++L
Sbjct: 431 YFLDISNNNLQ-------GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR---LENL 480
Query: 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
DLS N+ L + ++ L +L L N++ + L L L HN ++ +
Sbjct: 481 DLSRNQFSGAVPRKLGSLSE-LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539
Query: 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SLP 552
+F MP L +DLS N++S + L +NISHN L SLP
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
Score = 61.0 bits (148), Expect = 1e-09
Identities = 111/437 (25%), Positives = 185/437 (42%), Gaps = 70/437 (16%)
Query: 187 LSNLETLLLRCNKITDLNGNLFR-HLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
+ NLETL DL+ N+ + N ++ SF+ L++++L NV L +
Sbjct: 139 IPNLETL--------DLSNNMLSGEIPN--DIG-SFSSLKVLDLGGNVLVGKIPNSLTNL 187
Query: 246 S---FSLFNSNEFPYYILNK--NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
+ F SN+ I + + +L+W+ + NN+ Y + LTSLN+++L YN
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247
Query: 301 IS-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSF 359
++ I ++L + K L+ + L N L + ++L++L ++ LS N L
Sbjct: 248 LTGPIPSSLGNL---KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304
Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLP------------------------NLVKLDLQ 395
L N+ + L N P A +LP NL LDL
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364
Query: 396 DNKLKD------------FNLNVFSNITSKQTPMNLN---------LSNNYITNLYENDK 434
N L F L +FSN + P +L L +N + ++
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424
Query: 435 KQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
+ P+ + LD+SNN +Q +N + SL+ L L N+ +FG+ LE L
Sbjct: 425 TKLPL-VYFLDISNNNLQG-RINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLD 481
Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
L N + V R + L + LS N++S ++ KL L++SHN+L
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541
Query: 555 VFSN-TIIEKLDISYNQ 570
FS ++ +LD+S NQ
Sbjct: 542 SFSEMPVLSQLDLSQNQ 558
Score = 60.6 bits (147), Expect = 2e-09
Identities = 103/411 (25%), Positives = 183/411 (44%), Gaps = 43/411 (10%)
Query: 187 LSNLETLLLRCNKIT-DLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L ++T+ L N+++ + ++F +L+ L+LS N ++ + L+ L++
Sbjct: 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN----LETLDL 147
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK-ISKI 304
S ++ S E P I + ++L+ L + N + SL NLTSL ++ L N+ + +I
Sbjct: 148 SNNML-SGEIPNDI--GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204
Query: 305 HNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
L K LK I L N L L LN + L YN L +S NL N
Sbjct: 205 PRELGQM---KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261
Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN-----------KLKDFN-LNVFSNITS 412
+ + L N++ P + +L L+ LDL DN +L++ L++FSN +
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321
Query: 413 KQTPMNLN----------LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFLQT 461
+ P+ L SN + + +N K + + LDLS N + E+P +
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV--LDLSTNNLTGEIP----EG 375
Query: 462 FADS--LRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
S L KL L N ++ + G L + L+ N+ + + F +P + +D+
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435
Query: 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
S N + + + L++L+++ N+ D F + +E LD+S NQ
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 52.5 bits (127), Expect = 4e-09
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
+L+ L L N + + AF L L++L L NN+ + F G+P+L+ +DLS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 48.7 bits (117), Expect = 9e-08
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
L ++ LS N L I +FK L N+ + LS N + I P AF LP+L LDL N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 44.5 bits (106), Expect = 3e-06
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
LK + LSNN L +I F L L + LS N L SI +F L ++ ++ LS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 42.1 bits (100), Expect = 2e-05
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+KSLDLSNNR+ +P + +L+ L L N + + AF L L L L NN+
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGL-PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 40.6 bits (96), Expect = 6e-05
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 25/85 (29%)
Query: 140 NLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNK 199
NL++L L N++T + F+ L NL+ L L N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGL-------------------------PNLKVLDLSGNN 35
Query: 200 ITDLNGNLFRHLYNLQELSLSFNKL 224
+T ++ F L +L+ L LS N L
Sbjct: 36 LTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 40.6 bits (96), Expect = 7e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
L+ L L +N + V+ F G+PNL+++DLS N ++ ++ E F LR L++S N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 40.2 bits (95), Expect = 9e-05
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 267 LEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNY 326
L+ L + NN + I + + L +L ++L N ++ I F L+ + LS N
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL--PSLRSLDLSGNN 59
Query: 327 L 327
L
Sbjct: 60 L 60
Score = 40.2 bits (95), Expect = 9e-05
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
++ LS N++ I AF LPNL LDL N L + FS + S + +L+LS N +
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR---SLDLSGNNL 60
Score = 39.8 bits (94), Expect = 1e-04
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
NL++L L N++T + F+ L NL+ L LS N L I + F L+ L++S +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI--SPEAFSGLPSLRSLDLSGN 58
Query: 249 LF 250
Sbjct: 59 NL 60
Score = 38.3 bits (90), Expect = 5e-04
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 513 NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDISYNQ 570
NL+ +DLS N ++++ F L++L++S N L S+ + FS + LD+S N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Score = 36.4 bits (85), Expect = 0.002
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 290 SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
+L ++L N+++ I + F LK + LS N L I + F L L ++ LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGL--PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Query: 350 LL 351
L
Sbjct: 59 NL 60
Score = 28.7 bits (65), Expect = 1.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
K L L+ L + NN+ +I + L SL ++L N +
Sbjct: 21 KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 28.7 bits (65), Expect = 1.1
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447
NL LDL +N+L F + + + L+LS N +T++ P ++SLDLS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKV---LDLSGNNLTSISPEAFSGLPS-LRSLDLS 56
Query: 448 NNRI 451
N +
Sbjct: 57 GNNL 60
Score = 28.7 bits (65), Expect = 1.1
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 45 KLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLS 104
L+ L+++ L I AF + L ++ + + F + ++ LDLS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNL--KVLDLSGNNLTSISPEAFSGLPSLRS--LDLS 56
Query: 105 HNKL 108
N L
Sbjct: 57 GNNL 60
Score = 27.5 bits (62), Expect = 3.0
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 19/66 (28%)
Query: 99 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNL 158
+LDLS+N+L+V+ L NL+ L L N +T ++
Sbjct: 3 KSLDLSNNRLTVIPDGAFKG-------------------LPNLKVLDLSGNNLTSISPEA 43
Query: 159 FRHLQK 164
F L
Sbjct: 44 FSGLPS 49
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 50.2 bits (121), Expect = 1e-07
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
+++ +I Y+ TSL I L + ++ I + F+ L I + ++ L I
Sbjct: 20 SSVTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSS--LTSITIPSS-LTSIGEYA 75
Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
F N L +IT+ N L +I + +F N ++ +I + + + I AF N +L
Sbjct: 76 FSNCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITIPSS-VTTIGDYAFSNCSSL 127
Score = 37.9 bits (89), Expect = 0.002
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
I FYN L +IT+ ++ SI +F ++ +I L + + I AF N +L
Sbjct: 3 IGDYAFYNCS-LTSITIPSSV-TSIGEYAFSGCTSLKSITLP-SSLTSIGSYAFYNCSSL 59
Query: 390 VKLDLQDNKLKDFNLNVFSNITS 412
+ + + L FSN +S
Sbjct: 60 TSITIPSS-LTSIGEYAFSNCSS 81
Score = 31.4 bits (72), Expect = 0.51
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
+++ +I Y+ N +SL I + + ++ I + F LK I + ++ + I
Sbjct: 65 PSSLTSIGEYAFSNCSSLTSITI-PSNLTTIGSYAFSNC---SLKSITIPSS-VTTIGDY 119
Query: 334 TFYNLKELN 342
F N L
Sbjct: 120 AFSNCSSLK 128
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 44.2 bits (104), Expect = 1e-04
Identities = 81/312 (25%), Positives = 133/312 (42%), Gaps = 15/312 (4%)
Query: 112 NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKK 171
N+ ++ N L T+L L L LL + I+ L+G+ +
Sbjct: 41 NLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDL 100
Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
N N L+NL +L L N ITD+ + NL+EL LS NK++ +
Sbjct: 101 NLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL 159
Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
L+ L++SF+ + L NL+ L L + N I ++ + L++L
Sbjct: 160 RNLP---NLKNLDLSFNDLSDLPK----LLSNLSNLNNLDLSGNKISDLPP-EIELLSAL 211
Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351
++L N I ++ ++L + K L + LSNN LE + ++ NL L T+ LS N +
Sbjct: 212 EELDLSNNSIIELLSSLSNL---KNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQI 267
Query: 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
SI +S +L N+ + LS N + P + L L L LK L + S +
Sbjct: 268 SSI--SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILL 325
Query: 412 SKQTPMNLNLSN 423
+ N S+
Sbjct: 326 NNNILSNGETSS 337
Score = 33.8 bits (77), Expect = 0.22
Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 15/257 (5%)
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
+ L+ E+ NL L ++ L+ N L+S + L N+ ++ L N I I P
Sbjct: 80 ISSLDGSENLL--NLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIG 136
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
+ NL +LDL DNK++ S + + NL+LS N +++L + + +
Sbjct: 137 LLKSNLKELDLSDNKIESL----PSPLRNLPNLKNLDLSFNDLSDLPKL--LSNLSNLNN 190
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
LDLS N+I ++P +L +L L N I ++ NL L L L +N + +
Sbjct: 191 LDLSGNKISDLPP--EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL 247
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK 563
+ + + NL+ +DLS N+IS ++ + LR L++S N L + + ++ +
Sbjct: 248 PE-SIGNLSNLETLDLSNNQISSISSLGSLTN--LRELDLSGNSLSNALPLIALLLLLLE 304
Query: 564 LDISYNQDKIRPGRESN 580
L ++ + N
Sbjct: 305 LLLNLLLTLKALELKLN 321
Score = 32.6 bits (74), Expect = 0.63
Identities = 65/266 (24%), Positives = 104/266 (39%), Gaps = 38/266 (14%)
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
L L L +DNNNI +I ++L ++L NKI + + L + LK +
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNL---PNLKNLD 169
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
LS N L + NL LN + LS N + + + L+ + + LS N I + +
Sbjct: 170 LSFNDLSDL-PKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIEL-LS 226
Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
+ NL NL L+L +NKL+D I NL +
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLP--------------------ESIGNLSN---------L 257
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
++LDLSNN+I + +LR+L L N + + L +LELL +
Sbjct: 258 ETLDLSNNQISSIS---SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISML 527
+ + + N I+
Sbjct: 315 ALELKLNSILLNNNILSNGETSSPEA 340
Score = 29.9 bits (67), Expect = 4.1
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 12/235 (5%)
Query: 342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD 401
L + + N +L LS + + ++ + + L L
Sbjct: 38 PDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPS 97
Query: 402 FNLNVFSNITSKQTPMN------LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
+LN+ ++ + L+L NN IT++ +K LDLS+N+I+ +P
Sbjct: 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLP 156
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
+L+ L L FN++ L NL L L L N I+ + + L+
Sbjct: 157 SPLRN--LPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISDL-PPEIELLSALE 212
Query: 516 IIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
+DLS N I L L L +S+N+L LP + + + +E LD+S NQ
Sbjct: 213 ELDLSNNSIIELLSSLSNLK-NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 38.3 bits (89), Expect = 0.013
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
L+ ++L N+I + + + +L+++DLS+N + E LRILN++ N L
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
Score = 32.9 bits (75), Expect = 0.61
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
L N L + L+ L +I LS N ++ S ++ ++ + LS+N P
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484
Query: 382 AFVNLPNLVKLDLQDNKL 399
+ L +L L+L N L
Sbjct: 485 SLGQLTSLRILNLNGNSL 502
Score = 29.8 bits (67), Expect = 4.8
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 433 DKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLY---LDFNEIKHLDATAFGNLDV 489
D + +I L L N ++ F+ LR L L N I+ + G++
Sbjct: 412 DSTKGKWFIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS 467
Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
LE+L L +N+ + + + +L+I++L+ N +S
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 35.8 bits (83), Expect = 0.057
Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 39/208 (18%)
Query: 380 PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPI 439
L +LDL DN L V ++ + L L+NN + + +
Sbjct: 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL------GDRGLRL 127
Query: 440 YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL----DVLELLSL 495
K L +++P L KL L N ++ A L+ L+L
Sbjct: 128 LAKGL-------KDLPPA--------LEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172
Query: 496 EHNNI----AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFK----LRILNISHNR 547
+N I + NL+++DL+ N ++ + L +LN+ N
Sbjct: 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232
Query: 548 LRSLPRDVFSNTIIE------KLDISYN 569
L ++ ++ L +S N
Sbjct: 233 LTDAGAAALASALLSPNISLLTLSLSCN 260
Score = 29.2 bits (66), Expect = 5.6
Identities = 35/142 (24%), Positives = 45/142 (31%), Gaps = 39/142 (27%)
Query: 101 LDLSHNKLSVLNM---ATLYSNVTKLQHL----------GTTILKDREKLLSNLETLLLR 147
L L N+L + A L+ L G L + K NLE L L
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201
Query: 148 CNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD----- 202
N +TD + S L +LE L L N +TD
Sbjct: 202 NNGLTDEGASALAETLAS---------------------LKSLEVLNLGDNNLTDAGAAA 240
Query: 203 LNGNLFRHLYNLQELSLSFNKL 224
L L +L LSLS N +
Sbjct: 241 LASALLSPNISLLTLSLSCNDI 262
Score = 28.5 bits (64), Expect = 9.0
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 32/155 (20%)
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN-LNLSNNYITNLYENDKKQA-- 437
A +L +L+L +N + D + + + L+L+NN +T+ E A
Sbjct: 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD--EGASALAET 216
Query: 438 ---PIYIKSLDLSNNRIQEVPV----NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
++ L+L +N + + + L + SL L L N+I T G D+
Sbjct: 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI-----TDDGAKDLA 271
Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
E+L+ +L +DL N+
Sbjct: 272 EVLA---------------EKESLLELDLRGNKFG 291
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 34.7 bits (79), Expect = 0.17
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 25/187 (13%)
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN 448
+ L L +N+LK N+ NI + L ++N +T++ P I+ ++LS
Sbjct: 201 ITTLILDNNELKSLPENLQGNIKT------LYANSNQLTSIPAT----LPDTIQEMELSI 250
Query: 449 NRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTF 508
NRI E+P + +L+ L L N+I L + L LS+ N+I +
Sbjct: 251 NRITELP----ERLPSALQSLDLFHNKISCLPENL---PEELRYLSVYDNSIRTLPAHLP 303
Query: 509 IGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISY 568
G+ +L + S LT L+ L N L SLP + ++ LD+S
Sbjct: 304 SGITHLNVQSNS------LTALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSK 355
Query: 569 NQDKIRP 575
NQ + P
Sbjct: 356 NQITVLP 362
Score = 33.1 bits (75), Expect = 0.41
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 73 LTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILK 132
TL + N +++ LP L I+ TL + N+L+ + ATL + +++ I +
Sbjct: 202 TTLILDNNELKSLPENLQGNIK-----TLYANSNQLTSIP-ATLPDTIQEMELSINRITE 255
Query: 133 DREKLLSNLETLLLRCNKITDLNGNL---------FR--------HLQKSIVKAKKNNNN 175
E+L S L++L L NKI+ L NL + HL I +N+
Sbjct: 256 LPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS 315
Query: 176 NEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQII 227
+ E L L+TL N +T L +L LQ L +S N++ ++
Sbjct: 316 ---LTALPETLPPGLKTLEAGENALTSLPASLPPE---LQVLDVSKNQITVL 361
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 29.6 bits (68), Expect = 0.22
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 537 KLRILNISHNRLRSLPRDVFSN 558
LR L++S+N+L SLP F
Sbjct: 3 NLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 29.6 bits (68), Expect = 0.22
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 537 KLRILNISHNRLRSLPRDVFSN 558
LR L++S+N+L SLP F
Sbjct: 3 NLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 29.8 bits (68), Expect = 0.32
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228
NLETL L N+ITDL +L NL+ L LS NK+ +
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 26.3 bits (59), Expect = 5.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 267 LEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKI 304
LE L + NN I ++ L NL +L ++L NKI+ +
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38
Score = 26.3 bits (59), Expect = 5.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
LS NQI + NLPNL LDL NK+ D +
Sbjct: 8 LSNNQITDL--PPLSNLPNLETLDLSGNKITDLS 39
>gnl|CDD|204685 pfam11599, AviRa, RRNA methyltransferase AviRa. This family of
proteins represents the methyltransferase AviRa from
Streptomyces viridochromogenes. This protein mediates
the resistance to the antibiotic avilamycin. AviRa
methylates a specific guanine base within the
peptidyl-transferase loop of the 23S ribosomal RNA.
Length = 248
Score = 31.5 bits (71), Expect = 1.1
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD 480
L N I NL +D API +L+ + + + + D L+ L F + H+D
Sbjct: 71 LHRNSIANLIASDIDPAPI-----ELAADNLALLSKAGINAREDELKALSERFGKASHID 125
Query: 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPN-LQIIDLSFNEISMLT 528
A A + ELL+ E + +K + N L+ D F ++T
Sbjct: 126 A-AHAADRIEELLTAEGGALPCAIKTADLFDGNALEACDAGFAPDIIIT 173
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 31.8 bits (73), Expect = 1.4
Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 34/190 (17%)
Query: 155 NGNLFRHLQKSIVKA------KKNNNNN------EDQVSDREKLLSNLE----------- 191
NG + L+ ++VK+ K+N+ ++ + D + S E
Sbjct: 858 NGLIRDFLRINLVKSPISYIRKRNDPSSSGLLVQSNNFLDSTNIYSKAEIQSQSLSQNQG 917
Query: 192 ---TLLLRCNKITDL----NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLE 244
TLL R + L + + FR + + +K I+ ++ + + L L
Sbjct: 918 TIRTLLNRNKESQSLLILSSSDCFR----IGPFNGKKSKYHNIKESNPLIPIRNSLGPLG 973
Query: 245 ISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKI 304
+ N + + + + + ++L +DN Y L N + S I
Sbjct: 974 TVLQIANFSSSYHLLTHNQILVTKYLQLDNLKQTFQVKVLKYYLIDENGKIYNPDPCSNI 1033
Query: 305 HNNLFHFNIH 314
N F+ N +
Sbjct: 1034 ILNPFNLNWY 1043
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 30.3 bits (68), Expect = 3.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 257 YYILNKNLNTLEWLAMDN--NNIKNIRNYSLYNLTSLNYINLEY 298
YY+ N TL W + DN N + NYS+ N T++ +E+
Sbjct: 148 YYLYNSFTTTLPWKSCDNPWNTDRCFSNYSMANTTNMTSAVVEF 191
>gnl|CDD|185234 PRK15334, PRK15334, antigen presentation protein SpaN; Provisional.
Length = 336
Score = 29.8 bits (66), Expect = 3.7
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 5 LSHNKLSVLNMATLYSNVTKLQHLG--TTILKGDQLQGIFNSKLRELE-ITGKDLKFIDP 61
L HN L +A VT + +G + K D+ + +SK R LE ++GK L D
Sbjct: 85 LHHNGKGELRIAEKLLKVTAEKSVGLISAEAKVDKSAALLSSKNRPLESVSGKKLS-ADL 143
Query: 62 SAFDNIDACYDLTLKITNTQIEELP 86
A +++ D I++ I+ LP
Sbjct: 144 KAVESVSEVTDNATGISDDNIKALP 168
>gnl|CDD|222430 pfam13874, Nup54, Nucleoporin complex subunit 54. This is the
human Nup54 subunit of the nucleoporin complex,
equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all
have similar affinities for importin-beta. It seems
likely that they are the only FG-repeat nucleoporins of
the central channel, and as such they would form a zone
of equal affinity spanning the central channel. The
diffusion of importin-beta import complexes through the
central channel may be a stochastic process as the
affinities are similar, whereas movement from
cytoplasmic fibrils to the central channel and from the
central channel to the nuclear basket would be
facilitated by the subtle differences in affinity
between them.
Length = 141
Score = 28.8 bits (65), Expect = 3.9
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 75 LKITNTQIEELPSGLFD---KIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTIL 131
L N +++EL + +IE ++ +LSH L + + L++ G +
Sbjct: 53 LHEINDKLKELQKHDLETSARIEEAKRRHTELSHRLLKLAAK------LEILRNKGYPLS 106
Query: 132 KDREKLLSNLETLLLRCNKITDLNG 156
+ E+L + LE LL N L G
Sbjct: 107 PEEEELRNKLEQLLKELNDPAQLKG 131
>gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated.
Length = 870
Score = 29.2 bits (66), Expect = 8.5
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
Y +L + E ++ + N NI N +L L+ + E KI +I K
Sbjct: 505 YDLLLSYKSN-EKISTISQNFLNILNSLKNDLKFLSLSDFENLKILNE---ASEISIPKN 560
Query: 317 LKEIRLSNNYLELIE 331
++ L Y EL+E
Sbjct: 561 SYQLSLRFLYNELLE 575
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.376
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,109,643
Number of extensions: 2925998
Number of successful extensions: 3176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2950
Number of HSP's successfully gapped: 251
Length of query: 584
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 482
Effective length of database: 6,413,494
Effective search space: 3091304108
Effective search space used: 3091304108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)