RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11648
(584 letters)
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 213 bits (544), Expect = 1e-61
Identities = 100/514 (19%), Positives = 196/514 (38%), Gaps = 27/514 (5%)
Query: 70 CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG-- 127
+ T N + E+P L + E L+ S N L + T S + L L
Sbjct: 12 EVNKTYNCENLGLNEIPGTLPNSTE-----CLEFSFNVLPTIQNTTF-SRLINLTFLDLT 65
Query: 128 ----TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR 183
I +D + L+TL+L N + + K++
Sbjct: 66 RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KALKHLFFIQTGISSIDFIP 124
Query: 184 EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL 243
LE+L L N I+ + L+ L N + L+ ++ L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH--YLSKEDMSSLQQATNL 182
Query: 244 EISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK 303
++ + + + + N + + + SL E
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242
Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
I +F ++ I L +Y I S+TF+ L + L+ L + + L+
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLS 301
Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK-DFNLNVFSNITSKQTPMNLNLS 422
+ +VLS N+ + + + N P+L L ++ N + + N+ + + L+LS
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE---LDLS 358
Query: 423 NNYITNLYENDKK-QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
++ I + + + +++SL+LS N + + L L L F +K DA
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDA 417
Query: 482 -TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ---FYFSFK 537
+ F NL +L++L+L H+ + + ++ F G+P LQ ++L N ++ +
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 538 LRILNISHNRLRSLPRDVFSNTI-IEKLDISYNQ 570
L IL +S L S+ + F++ + +D+S+N+
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Score = 209 bits (534), Expect = 4e-60
Identities = 98/583 (16%), Positives = 194/583 (33%), Gaps = 75/583 (12%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
L+ S N L + T S + L L L Q+ I +L L +T
Sbjct: 37 CLEFSFNVLPTIQNTTF-SRLINLTFL---DLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92
Query: 56 LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
L F+ +A L L T I + + +E +L L N +S + +
Sbjct: 93 LIFMAETALSG---PKALKHLFFIQTGISSIDFIPLHNQKTLE--SLYLGSNHISSIKLP 147
Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
+ L+ L + N I L+ LQ++
Sbjct: 148 KGFP-------------------TEKLKVLDFQNNAIHYLSKEDMSSLQQA--------- 179
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
+L L N I + F Q L+ + ++
Sbjct: 180 --------------TNLSLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKN 224
Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
+ L L + ++ +E + + + NI + + + + L +
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQEL 283
Query: 295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKS 353
+L +S++ + L LK++ LS N E + + N L +++ N
Sbjct: 284 DLTATHLSELPSGLVGL---STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYI--YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
+ T +NL N+ + LS + I+ NL +L L+L N+ F
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
+ L+L+ + Q +K L+LS++ + +L+ L L
Sbjct: 401 QLEL---LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNL 456
Query: 472 DFNEIKHLD---ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLT 528
N + + L LE+L L +++ + + F + + +DLS N ++ +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 529 GEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
E + LN++ N + + + + +++ N
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNP 558
Score = 175 bits (447), Expect = 5e-48
Identities = 89/487 (18%), Positives = 171/487 (35%), Gaps = 68/487 (13%)
Query: 93 IENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKIT 152
IE T + + L+ + L ++ E L N +
Sbjct: 9 IEKEVNKTYNCENLGLNEIP----------------------GTLPNSTECLEFSFNVLP 46
Query: 153 DLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLY 212
+ F L NL L L +I ++ + F+ +
Sbjct: 47 TIQNTTFSR-------------------------LINLTFLDLTRCQIYWIHEDTFQSQH 81
Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAM 272
L L L+ N L + + L+ L + +S + L N TLE L +
Sbjct: 82 RLDTLVLTANPLI--FMAETALSGPKALKHLFFIQTGISS--IDFIPL-HNQKTLESLYL 136
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
+N+I +I+ + L ++ + N I + + L+ N + IE
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196
Query: 333 DTFYNLKELNTITLSYN--LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP--N 388
F + ++ LL K + ++ + I P F L +
Sbjct: 197 GAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN 448
+ ++LQ + + + N F + Q L+L+ +++ L +K L LS
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQE---LDLTATHLSEL--PSGLVGLSTLKKLVLSA 310
Query: 449 NRIQEVPVNFLQTFADSLRKLYLDFNEIK-HLDATAFGNLDVLELLSLEHNNIAVV--VK 505
N+ + + F SL L + N + L NL+ L L L H++I
Sbjct: 311 NKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF--SNTIIEK 563
+ +LQ ++LS+NE L E F +L +L+++ RL+ + +++
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 564 LDISYNQ 570
L++S++
Sbjct: 430 LNLSHSL 436
Score = 151 bits (383), Expect = 2e-39
Identities = 88/503 (17%), Positives = 185/503 (36%), Gaps = 84/503 (16%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
++L+L+ N ++ + S V + + G T +G+ NS ++ L
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW---------- 231
Query: 61 PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
+ E++ +F+ + + +++L + ++ T +
Sbjct: 232 -------------LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-- 276
Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
S L+ L L +++L L
Sbjct: 277 -----------------FSGLQELDLTATHLSELPSGLVG-------------------- 299
Query: 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
LS L+ L+L NK +L + +L LS+ N +EL + + E L
Sbjct: 300 ------LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK-RLELGTGCLENLENL 352
Query: 241 QLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
+ L++S +++ L +NL+ L+ L + N +++ + L ++L + +
Sbjct: 353 RELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI---KTT 357
+ F LK + LS++ L++ F L L + L N KT
Sbjct: 412 LKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470
Query: 358 SFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM 417
S + L + +VLSF + I +AF +L + +DL N+L ++ S++
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY--- 527
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
LNL++N+I+ + + ++++L N + N L + +++
Sbjct: 528 -LNLASNHISIILPSLLPILS-QQRTINLRQNPLDCTCSN-----IYFLEWYKENMQKLE 580
Query: 478 HLDATAFGNLDVLELLSLEHNNI 500
+ T N +L + L +
Sbjct: 581 DTEDTLCENPPLLRGVRLSDVTL 603
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 214 bits (547), Expect = 1e-60
Identities = 110/515 (21%), Positives = 204/515 (39%), Gaps = 49/515 (9%)
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHL-------GTTILKDREKLLSNLETLLLRCNKIT 152
L LS N + + ++ + +LQ L TI K+ + L NL L L +KI
Sbjct: 28 RLLLSFNYIRTVTASSF-PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86
Query: 153 DLNGNLFRHLQK-SIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN-GNLFRH 210
L+ + F+ L ++ ++ + L L L L N+I L F
Sbjct: 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146
Query: 211 LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI----------- 259
L +L+ + S N++ ++ + + L ++ + S +
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206
Query: 260 ----LNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK 315
++ N T++ +N I + +SL + ++ I N F
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
++ + LS+ ++ + S F LK+L + L+YN + I +F L+N+ + LS+N +
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDK- 434
+Y + F LP + +DLQ N + F + QT L+L +N +T ++
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT---LDLRDNALTTIHFIPSI 383
Query: 435 -------------KQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
+ + + LS NR++ + + + L+ L L+ N
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 482 TA-FGNLDVLELLSLEHNNIAVVVK-----RTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
LE L L N + + + F G+ +LQ++ L+ N ++ L F
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503
Query: 536 FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
LR L+++ NRL L + +E LDIS NQ
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLPAN-LEILDISRNQ 537
Score = 178 bits (453), Expect = 7e-48
Identities = 91/442 (20%), Positives = 176/442 (39%), Gaps = 57/442 (12%)
Query: 136 KLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLL 195
++L+ E LLL N I + + F L++ + + + + L NL L L
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 196 RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEF 255
+KI L+ + F+ L++L EL L F L L F
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF--------------------- 119
Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIR-NYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH 314
+NL L L + N I+++ + S L SL I+ N+I + +
Sbjct: 120 ------RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Query: 315 KRLKEIRLSNNYLELIESDTFYNLKE------LNTITLSYNLLKSIKTTSFKNLNNMLNI 368
K L L+ N L S + L + +S N T +F N +
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN 428
+ + +++ + +KD + N F+ + +L+LS+ ++ +
Sbjct: 234 ------------FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV-RHLDLSHGFVFS 280
Query: 429 LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLD 488
L + +K L+L+ N+I ++ D+L+ L L +N + L ++ F L
Sbjct: 281 LNSRVFETLK-DLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLP 338
Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
+ + L+ N+IA++ +TF + LQ +DL N ++ + + + +S N+L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP-----SIPDIFLSGNKL 393
Query: 549 RSLPRDVFSNTIIEKLDISYNQ 570
+LP+ + + + +S N+
Sbjct: 394 VTLPKINLTANL---IHLSENR 412
Score = 168 bits (426), Expect = 2e-44
Identities = 90/507 (17%), Positives = 184/507 (36%), Gaps = 67/507 (13%)
Query: 2 TLDLSHNKLSVLNM-ATLYSNVTKLQHLG------TTILKGDQLQGIFNSKLRELEITGK 54
L L LS + + N+ L L ++ + + L+ ++ +
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSN 158
Query: 55 DLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDK----IENIEQMTLDLSHNKLSV 110
+ + + + + + S + K N+ LD+S N +V
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218
Query: 111 LNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAK 170
+ ++K Q L ++ + I D + N F L +S
Sbjct: 219 DITGNFSNAISKSQAF-------SLILAHHIMGAGFGFHNIKDPDQNTFAGLARS----- 266
Query: 171 KNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELN 230
++ L L + LN +F L +L+ L+L++NK+ ++
Sbjct: 267 ------------------SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN--KIA 306
Query: 231 SNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTS 290
F + LQ+L +S+ N Y L + ++ + N+I I++ + L
Sbjct: 307 DEAFYGLDNLQVLNLSY---NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 291 LNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNL 350
L ++L N ++ IH + +I LS N L + N I LS N
Sbjct: 364 LQTLDLRDNALTTIHF-------IPSIPDIFLSGNKLVTLPKINL----TANLIHLSENR 412
Query: 351 LKSIKTTSF-KNLNNMLNIVLSFNQIKYIYPNA-FVNLPNLVKLDLQDNKLKDFNLNVFS 408
L+++ F + ++ ++L+ N+ + P+L +L L +N L+
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472
Query: 409 NITSKQTP--MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
+ L L++NY+ +L ++ L L++NR+ + N +L
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHND---LPANL 528
Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELL 493
L + N++ + F +L VL++
Sbjct: 529 EILDISRNQLLAPNPDVFVSLSVLDIT 555
Score = 110 bits (276), Expect = 2e-25
Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 28/261 (10%)
Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY-IYPNAFVNLPNLVKLD 393
L + LS+N ++++ +SF L + + L I AF NLPNL LD
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79
Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY-IKSLDLSNNRIQ 452
L +K+ + + F + L L +++ D + + LDLS N+I+
Sbjct: 80 LGSSKIYFLHPDAFQGLFHLFE---LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136
Query: 453 EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV--LELLSLEHNNIAVVVKRTFIG 510
+ ++ +SL+ + N+I + L L SL N++ V +
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196
Query: 511 MPN------LQIIDLSFNEISM------------LTGEQFYFSFKLRILNISHNRLRSLP 552
N L+I+D+S N ++ + + + ++
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256
Query: 553 RDVFSN---TIIEKLDISYNQ 570
++ F+ + + LD+S+
Sbjct: 257 QNTFAGLARSSVRHLDLSHGF 277
Score = 108 bits (271), Expect = 9e-25
Identities = 76/425 (17%), Positives = 147/425 (34%), Gaps = 117/425 (27%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
M + + + T G+ S +R L+++ + ++
Sbjct: 243 MGAGFGFHNIKDPDQNT--------------------FAGLARSSVRHLDLSHGFVFSLN 282
Query: 61 PSAFDNIDACYDL-TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
F+ DL L + +I ++ F ++N++ L+LS+N L L + Y
Sbjct: 283 SRVFET---LKDLKVLNLAYNKINKIADEAFYGLDNLQ--VLNLSYNLLGELYSSNFYG- 336
Query: 120 VTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ 179
L + + L+ N I + F+
Sbjct: 337 ------------------LPKVAYIDLQKNHIAIIQDQTFKF------------------ 360
Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
L L+TL LR N +T ++ + ++ ++ LS NKL +
Sbjct: 361 -------LEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLP----------- 397
Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRN-YSLYNLTSLNYINLEY 298
K T + + N ++N+ Y L + L + L
Sbjct: 398 ----------------------KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435
Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLEL-----IESDTFYNLKELNTITLSYNLLKS 353
N+ S + + + L+++ L N L+L + D F L L + L++N L S
Sbjct: 436 NRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
+ F +L + + L+ N++ + N NL LD+ N+L N +VF +++
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVL 552
Query: 414 QTPMN 418
N
Sbjct: 553 DITHN 557
Score = 93.7 bits (233), Expect = 4e-20
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 21/227 (9%)
Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK-DFNL 404
+ L + + LN ++LSFN I+ + ++F L L L+L +
Sbjct: 11 YRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66
Query: 405 NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD 464
F N+ + + L+L ++ I L+ + + ++ L L + + + F +
Sbjct: 67 EAFRNLPNLRI---LDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKD-GYFRN 121
Query: 465 --SLRKLYLDFNEIKHLDA-TAFGNLDVLELLSLEHNNIAVVVKRTF--IGMPNLQIIDL 519
+L +L L N+I+ L +FG L+ L+ + N I +V + + L L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 520 SFNEISMLTGEQFYFSFK------LRILNISHNRLRSLPRDVFSNTI 560
+ N + + L IL++S N FSN I
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228
Score = 45.6 bits (108), Expect = 4e-05
Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 12/184 (6%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHL--GTTILKGDQLQGIF--NSKLRELEITGKDLK 57
+ LS N+L L++ V LQ L N L +L + L+
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464
Query: 58 FIDPSAFDNIDACYDLT----LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNM 113
+ D L+ L + + + LP G+F + + L L+ N+L+VL+
Sbjct: 465 LAWETELCW-DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR--GLSLNSNRLTVLSH 521
Query: 114 ATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNK-ITDLNGNLFRHLQKSIVKAKKN 172
L +N+ L +L + +L L + NK I + + F +
Sbjct: 522 NDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAG 581
Query: 173 NNNN 176
+
Sbjct: 582 PPAD 585
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 208 bits (532), Expect = 3e-59
Identities = 133/597 (22%), Positives = 237/597 (39%), Gaps = 81/597 (13%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
L+L HN+LS L+ T + T L L L + +Q I N L L+++
Sbjct: 77 VLNLQHNELSQLSDKTF-AFCTNLTEL---HLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
L ++ +L L N +I+ L S D N L+LS N++ +
Sbjct: 133 LSSTKLGTQVQLENLQELLLS--NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190
Query: 116 LYSNVTKLQHL-------GTTILKD--REKLLSNLETLLLRCNKITDLNGNLFRHLQKSI 166
+ +L L G ++ + E +++ L L ++++ + F L+
Sbjct: 191 F-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK--- 246
Query: 167 VKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQI 226
+NL L L N + + + F L L+ L +N +Q
Sbjct: 247 --------------------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ- 285
Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILN------KNLNTLEWLAMDNNNIKNI 280
L S+ ++ L + S + + + L LE L M++N+I I
Sbjct: 286 -HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344
Query: 281 RNYSLYNLTSLNYINLEYNKIS--KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL 338
++ L +L Y++L + S + N F H L + L+ N + IESD F L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404
Query: 339 KELNTITLSYNLLK-SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
L + L N + + ++ L N+ I LS+N+ + N+F +P+L +L L+
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464
Query: 398 KLKDFN--LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
LK+ + + F + + L+LSNN I N+ ++ + ++ LDL +N +
Sbjct: 465 ALKNVDSSPSPFQPLRNLTI---LDLSNNNIANINDDMLEGLE-KLEILDLQHNNLA--- 517
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
L + L L +L+LE N + F + L+
Sbjct: 518 --------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563
Query: 516 IIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI--IEKLDISYNQ 570
IIDL N ++ L F L+ LN+ N + S+ + VF + +LD+ +N
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620
Score = 199 bits (508), Expect = 5e-56
Identities = 130/574 (22%), Positives = 207/574 (36%), Gaps = 61/574 (10%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHL-----GTTILKGDQLQGIFNSKLRELEITGKDL 56
TLDLSHN LS + T + LQ L LK ++L NS L++LE++ +
Sbjct: 125 TLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATL 116
K P F I + L L L L ++ N L LS+++LS + T
Sbjct: 184 KEFSPGCFHAIGRLFGLFLN-NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242
Query: 117 YS-NVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKA 169
T L L + D L LE L N I L + L
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL- 301
Query: 170 KKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIEL 229
L + + + ++ F+ L L+ L++ N + +
Sbjct: 302 ---------------NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP--GI 344
Query: 230 NSNVFDVFEKLQLLEISFSLFNSNEFPYYIL-NKNLNTLEWLAMDNNNIKNIRNYSLYNL 288
SN+F L+ L +S S + + + L L + N I I + + L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
L ++L N+I + + + EI LS N + ++F + L + L
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 349 NLLKSI--KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
LK++ + F+ L N+ + LS N I I + L L LDLQ N L +
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523
Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
+L L+L +N E+PV + L
Sbjct: 524 NPGGPIYFLKGLSHL--------------------HILNLESNGFDEIPVEVFKDL-FEL 562
Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTF-IGMPNLQIIDLSFNEIS 525
+ + L N + L A+ F N L+ L+L+ N I V K+ F NL +D+ FN
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Query: 526 MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNT 559
+F + +N +H + L NT
Sbjct: 623 CTCESIAWF---VNWINETHTNIPELSSHYLCNT 653
Score = 198 bits (506), Expect = 1e-55
Identities = 124/592 (20%), Positives = 219/592 (36%), Gaps = 107/592 (18%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
D SH KL+ + + + + L +T L+ +
Sbjct: 8 VADCSHLKLTQV------------------------PDDLPTN-ITVLNLTHNQLRRLPA 42
Query: 62 SAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
+ F LT L + I +L L K+ ++ L+L HN+LS L+ T
Sbjct: 43 ANFTR---YSQLTSLDVGFNTISKLEPELCQKLPMLK--VLNLQHNELSQLSDKTFAF-- 95
Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
+NL L L N I + N F
Sbjct: 96 -----------------CTNLTELHLMSNSIQKIKNNPFVK------------------- 119
Query: 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
NL TL L N ++ L NLQEL LS NK+Q ++ L
Sbjct: 120 ------QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173
Query: 241 QLLEIS---FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL---YNLTSLNYI 294
+ LE+S F+ F + L L ++N + L TS+ +
Sbjct: 174 KKLELSSNQIKEFSPGCF------HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
Query: 295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI 354
+L +++S N F L + LS N L ++ +D+F L +L L YN ++ +
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287
Query: 355 KTTSFKNL---------NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
+ S L + +S + I +F L L L+++DN + N
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347
Query: 406 VFSNITSKQTPMNLNLSNNYITNLYEND---KKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+F+ + + + L+LSN++ + + A + L+L+ N+I ++ +
Sbjct: 348 MFTGLINLKY---LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404
Query: 463 ADSLRKLYLDFNEIKH-LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
L L L NEI L + L+ + + L +N + + +F +P+LQ + L
Sbjct: 405 -GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 522 NEISMLTGEQFYFS--FKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
+ + F L IL++S+N + ++ D+ +E LD+ +N
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515
Score = 147 bits (373), Expect = 1e-37
Identities = 67/292 (22%), Positives = 127/292 (43%), Gaps = 13/292 (4%)
Query: 288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS 347
T++ +NL +N++ ++ F + +L + + N + +E + L L + L
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 348 YNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVF 407
+N L + +F N+ + L N I+ I N FV NL+ LDL N L L
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 408 SNITSKQTPMNLNLSNNYITNLYEND-KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
+ + Q L LSNN I L + A +K L+LS+N+I+E L
Sbjct: 142 VQLENLQE---LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG-RL 197
Query: 467 RKLYLDFNEIKHLDATAFGNLDV---LELLSLEHNNIAVVVKRTFIGM--PNLQIIDLSF 521
L+L+ ++ + LSL ++ ++ TF+G+ NL ++DLS+
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDK 572
N ++++ + F + +L + +N ++ L + L++ + K
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Score = 38.8 bits (91), Expect = 0.004
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 22/128 (17%)
Query: 1 MTLDLSHNKLSVL-NMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFI 59
LDL HN L+ L A + L+ L S L L + I
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGL---------------SHLHILNLESNGFDEI 551
Query: 60 DPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
F + ++L + + + LP+ +F+ +++ +L+L N ++ +
Sbjct: 552 PVEVFKD---LFELKIIDLGLNNLNTLPASVFNNQVSLK--SLNLQKNLITSVEKKVFGP 606
Query: 119 NVTKLQHL 126
L L
Sbjct: 607 AFRNLTEL 614
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 188 bits (480), Expect = 1e-53
Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 10/307 (3%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
L + N IK + + L + L N +S + F+ L+ + L +N
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN--LFNLRTLGLRSN 90
Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVN 385
L+LI F L L + +S N + + F++L N+ ++ + N + YI AF
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 386 LPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLD 445
L +L +L L+ L S++ L L + I + + K+ +K L+
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIV---LRLRHLNINAIRDYSFKRLY-RLKVLE 206
Query: 446 LS-NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
+S + + N L +L L + + + A +L L L+L +N I+ +
Sbjct: 207 ISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEK 563
+ LQ I L +++++ F LR+LN+S N+L +L VF + +E
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324
Query: 564 LDISYNQ 570
L + N
Sbjct: 325 LILDSNP 331
Score = 187 bits (476), Expect = 4e-53
Identities = 80/364 (21%), Positives = 140/364 (38%), Gaps = 60/364 (16%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
+ + L L N+I LN + F +L+EL L+ N + +E F+
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE--PGAFN---------- 77
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
NL L L + +N +K I L++L +++ NKI +
Sbjct: 78 -----------------NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
+ +F + LK + + +N L I F L L +TL L SI T + +L+ +
Sbjct: 121 DYMFQDLYN--LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
+ + L I I +F L L L++ TP L N
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHW-----------PYLDTMTPNCLYGLN-- 225
Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
+ SL +++ + VP ++ LR L L +N I ++ +
Sbjct: 226 ---------------LTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLH 269
Query: 486 NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISH 545
L L+ + L +AVV F G+ L+++++S N+++ L F+ L L +
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Query: 546 NRLR 549
N L
Sbjct: 330 NPLA 333
Score = 168 bits (427), Expect = 4e-46
Identities = 78/365 (21%), Positives = 141/365 (38%), Gaps = 55/365 (15%)
Query: 70 CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG-- 127
D + + +P G+ + LDL N++ LN ++ L+ L
Sbjct: 11 AQDRAVLCHRKRFVAVPEGIPTETR-----LLDLGKNRIKTLNQDEF-ASFPHLEELELN 64
Query: 128 ----TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR 183
+ + L NL TL LR N++ + +F L
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL--------------------- 103
Query: 184 EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL 243
SNL L + NKI L +F+ LYNL+ L + N ++ ++ F L+ L
Sbjct: 104 ----SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN--DLVYISHRAFSGLNSLEQL 157
Query: 244 EIS---FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL-EYN 299
+ + + +L+ L L + + NI IR+YS L L + + +
Sbjct: 158 TLEKCNLTSIPTEAL------SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 300 KISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSF 359
+ + N + L + +++ L + +L L + LSYN + +I+ +
Sbjct: 212 YLDTMTPNCLY---GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL 419
L + I L Q+ + P AF L L L++ N+L +VF ++ + +T L
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET---L 325
Query: 420 NLSNN 424
L +N
Sbjct: 326 ILDSN 330
Score = 157 bits (398), Expect = 3e-42
Identities = 68/361 (18%), Positives = 132/361 (36%), Gaps = 61/361 (16%)
Query: 42 FNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
++ R L++ +K ++ F + +L L + + G F+ + N+ TL
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--NENIVSAVEPGAFNNLFNLR--TL 85
Query: 102 DLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRH 161
L N+L ++ + LSNL L + NKI L +F+
Sbjct: 86 GLRSNRLKLIPLGVFTG-------------------LSNLTKLDISENKIVILLDYMFQD 126
Query: 162 LQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSF 221
L NL++L + N + ++ F L +L++L+L
Sbjct: 127 L-------------------------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161
Query: 222 NKLQIIELNSNVFDVFEKLQLLEIS---FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK 278
L I + L +L + + F K L L+ L + +
Sbjct: 162 CNLTSIP--TEALSHLHGLIVLRLRHLNINAIRDYSF------KRLYRLKVLEISHWPYL 213
Query: 279 NIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL 338
+ + +L +++ + ++ + L+ + LS N + IE + L
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPISTIEGSMLHEL 271
Query: 339 KELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK 398
L I L L ++ +F+ LN + + +S NQ+ + + F ++ NL L L N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 399 L 399
L
Sbjct: 332 L 332
Score = 120 bits (303), Expect = 2e-29
Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 33/232 (14%)
Query: 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
+ + ++ + L N+IK + + F + P+L +L+L +N +
Sbjct: 12 QDRAVLCHRKRFVAVPEGIPTETRL---LDLGKNRIKTLNQDEFASFPHLEELELNENIV 68
Query: 400 KDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL 459
F+N+ + +++L L +NR++ +P+
Sbjct: 69 SAVEPGAFNNLFN----------------------------LRTLGLRSNRLKLIPLGVF 100
Query: 460 QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
+L KL + N+I L F +L L+ L + N++ + R F G+ +L+ + L
Sbjct: 101 T-GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
Query: 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
++ + E L +L + H + ++ F ++ L+IS+
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Score = 74.0 bits (182), Expect = 3e-14
Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 62/232 (26%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI------FNSKLRELEITG-K 54
L L L+ + L S++ L L L+ + I +L+ LEI+
Sbjct: 156 QLTLEKCNLTSIPTEAL-SHLHGLIVL---RLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 55 DLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNM 113
L + P+ ++ LT L IT+ + +P + + L+LS+N +S +
Sbjct: 212 YLDTMTPNCLYGLN----LTSLSITHCNLTAVPYLAVRHLVYLR--FLNLSYNPISTIEG 265
Query: 114 ATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
+ L+ L L+ + L ++ + FR L
Sbjct: 266 SMLHE-------------------LLRLQEIQLVGGQLAVVEPYAFRGL----------- 295
Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225
+ L L + N++T L ++F + NL+ L L N L
Sbjct: 296 --------------NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 185 bits (471), Expect = 4e-53
Identities = 70/348 (20%), Positives = 140/348 (40%), Gaps = 27/348 (7%)
Query: 223 KLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRN 282
+ + I+ N VF + + + ++ E + LN + + N+ ++ +
Sbjct: 9 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFE------DITLNNQKIVTFKNSTMRKLPA 62
Query: 283 YSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN 342
L + + +NL +I +I F + ++++ + N + + F N+ L
Sbjct: 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
+ L N L S+ F N + + +S N ++ I + F +L L L N+L
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+L++ ++ N+S N ++ L PI ++ LD S+N I V
Sbjct: 181 DLSLIPSLFH------ANVSYNLLSTL------AIPIAVEELDASHNSINVVRGPVNV-- 226
Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L L L N + N L + L +N + ++ F+ M L+ + +S N
Sbjct: 227 --ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 523 EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
+ L L++L++SHN L + R+ +E L + +N
Sbjct: 283 RLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329
Score = 159 bits (404), Expect = 1e-43
Identities = 73/399 (18%), Positives = 146/399 (36%), Gaps = 77/399 (19%)
Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
+ + + L+N + + + + + L L ++ L+L+ +++ E+++
Sbjct: 29 DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDT 86
Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
F +T++ L M N I+ + + N+ L
Sbjct: 87 YAF---------------------------AYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119
Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351
+ LE N +S + +FH +L + +SNN LE IE DTF L + LS N L
Sbjct: 120 TVLVLERNDLSSLPRGIFHNT--PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
+ + +L + +S+N + + +LD N + V +T
Sbjct: 178 THVDLSLIPSLF---HANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT 229
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
L L +N + + L ++ L
Sbjct: 230 -------------------------------ILKLQHNNLTDTAWLLNYP---GLVEVDL 255
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
+NE++ + F + LE L + +N + + +P L+++DLS N + + Q
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQ 314
Query: 532 FYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
F +L L + HN + +L ++ L +S+N
Sbjct: 315 PQFD-RLENLYLDHNSIVTLKLSTHHT--LKNLTLSHND 350
Score = 137 bits (347), Expect = 9e-36
Identities = 73/403 (18%), Positives = 145/403 (35%), Gaps = 78/403 (19%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
+ N+ + +LP+ L D +E L+L+ ++ ++
Sbjct: 49 IVTFKNSTMRKLPAALLDSFRQVE--LLNLNDLQIEEIDTYAFAY--------------- 91
Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL 193
++ L + N I L ++F+++ L L
Sbjct: 92 ----AHTIQKLYMGFNAIRYLPPHVFQNV-------------------------PLLTVL 122
Query: 194 LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSN 253
+L N ++ L +F + L LS+S N L+ IE + F LQ L++S +
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTH- 179
Query: 254 EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
+ + +L + N + +L ++ ++ +N I+ + +
Sbjct: 180 -----VDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN---- 225
Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
L ++L +N L ++ N L + LSYN L+ I F + + + +S N
Sbjct: 226 -VELTILKLQHN--NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
++ + +P L LDL N L N + NL L +N I L +
Sbjct: 283 RLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE----NLYLDHNSIVTLKLST 337
Query: 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI 476
+K+L LS+N + L ++ + +D +
Sbjct: 338 HHT----LKNLTLSHNDWDCNSLRALFR---NVARPAVDDADQ 373
Score = 118 bits (299), Expect = 3e-29
Identities = 74/451 (16%), Positives = 142/451 (31%), Gaps = 125/451 (27%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
+ ++ + L A L R++E
Sbjct: 49 IVTFKNSTMRKLPAALL-------------------------DSFRQVE----------- 72
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
L + + QIEE+ + F I++ L + N + L +
Sbjct: 73 ------------LLNLNDLQIEEIDTYAFAYAHTIQK--LYMGFNAIRYLPPHVFQN--- 115
Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
+ L L+L N ++ L +F +
Sbjct: 116 ----------------VPLLTVLVLERNDLSSLPRGIFHN-------------------- 139
Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
L TL + N + + + F+ +LQ L LS N+L ++ + L
Sbjct: 140 -----TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLF 189
Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
+S++L ++ +E L +N+I +R LT L L++N +
Sbjct: 190 HANVSYNLLSTLA--------IPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNL 238
Query: 302 SKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKN 361
+ + L E+ LS N LE I F ++ L + +S N L ++ +
Sbjct: 239 TDTAW----LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQP 293
Query: 362 LNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL 421
+ + + LS N + ++ N L L L N + L+ + NL L
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLK------NLTL 346
Query: 422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
S+N + N + + + +
Sbjct: 347 SHN---DWDCNSLRALFRNVARPAVDDADQH 374
Score = 103 bits (260), Expect = 3e-24
Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 28/244 (11%)
Query: 348 YNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF-----VNLPNLVKLDLQDNKLKDF 402
YN+ + N + V I + + + L N + +++ ++
Sbjct: 1 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+ + + LNL++ I + A I+ L + N I+ +P + Q
Sbjct: 61 PAALLDSFRQVEL---LNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV 116
Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L L L+ N++ L F N L LS+ +NN+ + TF +LQ + LS N
Sbjct: 117 -PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175
Query: 523 EISMLTGEQF----------------YFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDI 566
++ + + L+ SHN + + V + L +
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE--LTILKL 233
Query: 567 SYNQ 570
+N
Sbjct: 234 QHNN 237
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 190 bits (484), Expect = 4e-53
Identities = 106/583 (18%), Positives = 208/583 (35%), Gaps = 89/583 (15%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
+DLS N L +L + SN ++LQ L L +++ I + L L +TG
Sbjct: 36 NIDLSFNPLKILKSYSF-SNFSELQWL---DLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 56 LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
++ P +F L L T++ L S ++ ++ L+++HN + +
Sbjct: 92 IQSFSPGSFSG---LTSLENLVAVETKLASLESFPIGQLITLK--KLNVAHNFIHSCKLP 146
Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
+SN L+NL + L N I + N + L++
Sbjct: 147 AYFSN------------------LTNLVHVDLSYNYIQTITVNDLQFLRE---------- 178
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
+L + N I + F+ + L EL+L N +
Sbjct: 179 -----------NPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN-SSNIMKTCL 225
Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL-----EWLAMDNNNIKNIRNYSLYNLT 289
L + + F + L + + N + + L
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285
Query: 290 SLNYINLEYNKISKIHNNLFHFNIH-----------------KRLKEIRLSNNYLELIES 332
+++ ++L I + + HF LK + L+ N +
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK 345
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLN--NMLNIVLSFNQIKYIYPNAFVNLPNLV 390
L L+ + LS N L S+ +L ++ ++ LSFN + F+ L L
Sbjct: 346 --KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQ 402
Query: 391 KLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNN 449
LD Q + LK + F ++ L++S ++ + +L ++ N
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLY---LDISYTNTKIDFDGIFLGLT-SLNTLKMAGN 458
Query: 450 RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFI 509
++ ++ + +L L L +++ + F L L+LL++ HNN+ + +
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518
Query: 510 GMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
+ +L +D SFN I G +F L N+++N + +
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561
Score = 182 bits (464), Expect = 2e-50
Identities = 97/592 (16%), Positives = 200/592 (33%), Gaps = 73/592 (12%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
T KLS + + S+ + L + L+ + + S+L+ L+++ +
Sbjct: 15 TYQCMDQKLSKVP-DDIPSSTKNID------LSFNPLKILKSYSFSNFSELQWLDLSRCE 67
Query: 56 LKFIDPSAFDNIDACYDL-TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
++ I+ A+ + L L +T I+ G F + ++E L KL+ L
Sbjct: 68 IETIEDKAWHG---LHHLSNLILTGNPIQSFSPGSFSGLTSLE--NLVAVETKLASLESF 122
Query: 115 TLYSNVTKLQHL-------GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIV 167
+ + L+ L + L L+NL + L N I + N + L+
Sbjct: 123 PI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR---- 177
Query: 168 KAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQII 227
+ +L + N I + F+ + L EL+L N
Sbjct: 178 -----------------ENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN-SS 218
Query: 228 ELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL-----EWLAMDNNNIKNIRN 282
+ L + + F + L + + N +
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278
Query: 283 YSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN 342
+ L +++ ++L I + + HF + + + L+ + LK L
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFK----WQSLSIIRCQLKQFPTLDLPFLKSLT 334
Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNL--PNLVKLDLQDNKLK 400
L+ N L ++ + LS N + + ++ +L +L LDL N
Sbjct: 335 ---LTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 401 DFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQ 460
+ F + Q L+ ++ + + E + + LD+S +
Sbjct: 390 IMS-ANFMGLEELQH---LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445
Query: 461 TFADSLRKLYLDFNEIK-HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
SL L + N K + + F N L L L + + F + LQ++++
Sbjct: 446 GL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504
Query: 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
S N + L + + L L+ S NR+ + + + +++ N
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556
Score = 170 bits (433), Expect = 4e-46
Identities = 93/518 (17%), Positives = 170/518 (32%), Gaps = 86/518 (16%)
Query: 70 CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTT 129
++T + + ++ ++P + + +DLS N L +L +
Sbjct: 11 VPNITYQCMDQKLSKVPDDIPSSTK-----NIDLSFNPLKILKSYSF------------- 52
Query: 130 ILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN 189
S L+ L L +I + + L +
Sbjct: 53 ------SNFSELQWLDLSRCEIETIEDKAWHGLH-------------------------H 81
Query: 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
L L+L N I + F L +L+ L KL L S L+ L ++ +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA--SLESFPIGQLITLKKLNVAHNF 139
Query: 250 FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLN----YINLEYNKISKIH 305
+S + P Y NL L + + N I+ I L L +++ N I I
Sbjct: 140 IHSCKLPAYF--SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197
Query: 306 NNLFHFNIHKRLKEIRLSNNYL-ELIESDTFYNLKELNTITLSYNL------LKSIKTTS 358
+ F +L E+ L N+ I NL L+ L L+ + +
Sbjct: 198 DQAFQ---GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 359 FKNLNN--MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
+ L + + L++ F L N+ + L +K
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF-----KW 309
Query: 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI 476
+L++ + D +KSL L+ N+ SL L L N +
Sbjct: 310 QSLSIIRCQLKQFPTLDLPF----LKSLTLTMNKGSISFKK---VALPSLSYLDLSRNAL 362
Query: 477 KHLDATAFGNLDV--LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLT-GEQFY 533
++ +L L L L N +++ F+G+ LQ +D + + +T F
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421
Query: 534 FSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDISYNQ 570
KL L+IS+ + +F + L ++ N
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Score = 133 bits (336), Expect = 3e-33
Identities = 78/411 (18%), Positives = 144/411 (35%), Gaps = 49/411 (11%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHL------GTTILKGDQLQGIFNSKLRELEITG- 53
++LD+S N + + KL L ++ + LQ + + L +
Sbjct: 184 LSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241
Query: 54 ---KDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSV 110
++L+ +PS + + ++T T F + N+ + L+ +
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS--AMSLAGVSIKY 299
Query: 111 LNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAK 170
L + L + + + L L++L L NK + +
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA----------- 348
Query: 171 KNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLY--NLQELSLSFNKLQIIE 228
L +L L L N ++ + L +L+ L LSFN I+
Sbjct: 349 ----------------LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM- 391
Query: 229 LNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNL 288
S F E+LQ L+ S + +L L +L + N K + L
Sbjct: 392 --SANFMGLEELQHLDFQHSTLKR--VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
TSLN + + N + F L + LS LE I F L L + +S+
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
N L + ++ + L ++ + SFN+I+ +L +L +N +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 177 bits (451), Expect = 7e-49
Identities = 92/533 (17%), Positives = 199/533 (37%), Gaps = 67/533 (12%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
+LDLS NK++ + L + + L+ L + + I+
Sbjct: 30 SLDLSFNKITYIGHGDL-------RAC---------------ANLQVLILKSSRINTIEG 67
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
AF ++ + L L ++ + L S F + +++ L+L N L + +L+ N+T
Sbjct: 68 DAFYSLGSLEHLDL--SDNHLSSLSSSWFGPLSSLK--YLNLMGNPYQTLGVTSLFPNLT 123
Query: 122 KLQHLG-------TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
LQ L + I + L++L L ++ + + + ++ I + +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLS 182
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
+ + +LS++ L LR + + + + ++ S
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN- 241
Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
+LL++ + +E + LN L + + + ++ +
Sbjct: 242 ------ELLKLLRYILELSEV--EFDDCTLNGLGDF--NPSESDVVSELGKVETVTIRRL 291
Query: 295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI 354
++ + + ++ +++K I + N+ + L+ +LK L + LS NL+
Sbjct: 292 HIPQFYLFYDLSTVYSLL--EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349
Query: 355 K---TTSFKNLNNMLNIVLSFNQIKYI--YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
+ ++ +VLS N ++ + + L NL LD+ N +
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQW 408
Query: 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469
+ LNLS+ I + P ++ LD+SNN + + L++L
Sbjct: 409 PEKMRF---LNLSSTGIRVVKTC----IPQTLEVLDVSNNNLDSFSLFL-----PRLQEL 456
Query: 470 YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
Y+ N++K L + VL ++ + N + V F + +LQ I L N
Sbjct: 457 YISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 168 bits (428), Expect = 8e-46
Identities = 91/455 (20%), Positives = 169/455 (37%), Gaps = 57/455 (12%)
Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
L + +++L L NKIT + R +NL+ L+L+
Sbjct: 24 LTAAMKSLDLSFNKITYIGHGDLRAC-------------------------ANLQVLILK 58
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
++I + G+ F L +L+ L LS N L L+S+ F L+ L + + + +
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLS--SLSSSWFGPLSSLKYLNLMGNPYQT--LG 114
Query: 257 YYILNKNLNTLEWLAMDNNN-IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK 315
L NL L+ L + N IR LTSLN + ++ + + +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI--R 172
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
+ + L + + L + + L L + + + +
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 376 KYIYPNAFVNLPNLVK----------LDLQDNKLKDFNLN---VFSNITSKQTPM--NLN 420
+ +F L L++ D N L DFN + V S + +T L+
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL- 479
+ Y+ +K + + N+++ VP +F Q SL L L N +
Sbjct: 293 IPQFYLFYDLSTVYSLLE-KVKRITVENSKVFLVPCSFSQHL-KSLEFLDLSENLMVEEY 350
Query: 480 --DATAFGNLDVLELLSLEHNNIAVVVK--RTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
++ G L+ L L N++ + K + + NL +D+S N + + +
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWP 409
Query: 536 FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
K+R LN+S +R + + +E LD+S N
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQT--LEVLDVSNNN 442
Score = 166 bits (423), Expect = 4e-45
Identities = 92/508 (18%), Positives = 186/508 (36%), Gaps = 43/508 (8%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG------ 127
+ +PSGL ++ +LDLS NK++ + L LQ L
Sbjct: 9 VCDGRSRSFTSIPSGLTAAMK-----SLDLSFNKITYIGHGDL-RACANLQVLILKSSRI 62
Query: 128 TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLL 187
TI D L +LE L L N ++ L+ + F L N V+ L
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 188 SNLETL-LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
+NL+TL + +++ F L +L EL + L+ + S + L +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ--SQSLKSIRDIHHLTLH 180
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
+ + F I L+++ +L + + N+ + L + + + S + +
Sbjct: 181 L---SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
F E+ Y+ + F + + + + +
Sbjct: 238 ESF--------NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
+ + + Y + L + ++ ++++K+ + ++ S + L+LS N +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF---LDLSENLM 346
Query: 427 TNLYENDK--KQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDAT 482
Y + K A +++L LS N ++ + + +L L + N +
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ-KTGEILLTLKNLTSLDISRNTFHPMP-D 404
Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ + + L+L I VV L+++D+S N + F +L+ L
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSF----SLFLPRLQELY 457
Query: 543 ISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
IS N+L++LP + + IS NQ
Sbjct: 458 ISRNKLKTLPDASLFPV-LLVMKISRNQ 484
Score = 129 bits (326), Expect = 4e-32
Identities = 74/464 (15%), Positives = 172/464 (37%), Gaps = 68/464 (14%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKGDQLQGIFNSKLRELEITGKD 55
L+L N L + +L+ N+T LQ L + ++ G+ + L ELEI
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS--LNELEIKALS 159
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL---DLSHNKLSVLN 112
L+ + +I + LTL ++ L D + ++ + L +L+ + S L
Sbjct: 160 LRNYQSQSLKSIRDIHHLTL--HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217
Query: 113 MATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCN--KITDLNGNLFRHLQKSIVKAK 170
+ + S + KL G+ + + L L +L + + D N S
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277
Query: 171 KNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELN 230
E + L + + ++ L ++ +++ +K+ ++
Sbjct: 278 SELGKVE---------TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP-- 326
Query: 231 SNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYS--LYNL 288
+ + L+ L++S +L +L+ L + N++++++ L L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
+L +++ N + ++ ++++ + LS+ + ++++ L+ L+ +S
Sbjct: 387 KNLTSLDISRNTFHPMPDS---CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD---VSN 440
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N L S L + + +S N++K + + P L+ + + N+LK +F
Sbjct: 441 NNLDSF----SLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFD 494
Query: 409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
+TS ++ + L N
Sbjct: 495 RLTS----------------------------LQKIWLHTNPWD 510
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 174 bits (444), Expect = 7e-48
Identities = 110/582 (18%), Positives = 212/582 (36%), Gaps = 97/582 (16%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
LDLS N L L + + +LQ L L ++Q I + S L L +TG
Sbjct: 32 NLDLSFNPLRHLGSYSF-FSFPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 56 LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
++ + AF L L T + L + ++ ++ L+++HN + +
Sbjct: 88 IQSLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLK--ELNVAHNLIQSFKLP 142
Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
+SN L+NLE L L NKI + R L +
Sbjct: 143 EYFSN------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQ---------- 174
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
+ +L L N + + F+ + L +L+L N + +
Sbjct: 175 -----------MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL-NVMKTCI 221
Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
L++ + F + N++ +L L +L
Sbjct: 222 QGLAGLEVHRLVLGEFRNE---------------------GNLEKFDKSALEGLCNLTIE 260
Query: 295 NLEYNKISKIHNNLFH-FNIHKRLKEIRLSNNYLELIESDTF-YNLKELNTITLSYNLLK 352
+ +++ FN + L + +E ++ ++ + + L + +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL--KDFNLNVFSNI 410
++K S K L + N+ + V+LP+L LDL N L K
Sbjct: 321 TLKLKSLKRLT------FTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 411 TSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLY 470
TS + L+LS N + + N ++ LD ++ ++++ + +L L
Sbjct: 373 TSLKY---LDLSFNGVITMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIA-VVVKRTFIGMPNLQIIDLSFNEISMLTG 529
+ + F L LE+L + N+ + F + NL +DLS ++ L+
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 530 EQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
F L++LN++ N+L+S+P +F T ++K+ + N
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Score = 150 bits (380), Expect = 4e-39
Identities = 73/398 (18%), Positives = 150/398 (37%), Gaps = 29/398 (7%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L + + L L N + L F LQ L LS ++Q IE + L L +
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLIL 83
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
+ + S + L++L+ L N+ ++ N+ + +L +L +N+ +N I
Sbjct: 84 TGNPIQS--LALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL----NTITLSYNLLKSIKTTSFKN 361
+ F+ L+ + LS+N ++ I L ++ ++ LS N + I+ +FK
Sbjct: 141 LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 362 LNNMLNIVLSFNQIKY-IYPNAFVNLPNLVKLDLQ------DNKLKDFNLNVFSNITSKQ 414
+ + + L N + L L L + L+ F+ + + +
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN 474
L+ D + S L + I+ V ++ + L L
Sbjct: 259 I-EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNC 314
Query: 475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM--LTGEQF 532
+ +L L S + N + + +P+L+ +DLS N +S +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 533 YFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
+ + L+ L++S N + ++ + +E LD ++
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Score = 148 bits (375), Expect = 2e-38
Identities = 89/448 (19%), Positives = 169/448 (37%), Gaps = 55/448 (12%)
Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
L + + L L N + L F L+ L L
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFS-------------------------FPELQVLDLS 60
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
+I + ++ L +L L L+ N +Q L F LQ L + S
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLAS--LE 116
Query: 257 YYILNKNLNTLEWLAMDNNNIKNI-RNYSLYNLTSLNYINLEYNKISKIHNNLFHF--NI 313
+ + +L TL+ L + +N I++ NLT+L +++L NKI I+ +
Sbjct: 117 NFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK-SIKTTSFKNL------NNML 366
+ LS N + I+ F ++ L+ +TL N ++ T + L +L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
+ ++ +A L NL + + L + ++ + +L + I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486
+ + + L+L N + + P L+ SL++L N+ + + +
Sbjct: 295 ERVKDFSYNFG---WQHLELVNCKFGQFPTLKLK----SLKRLTFTSNKGGNA--FSEVD 345
Query: 487 LDVLELLSLEHNNIAV--VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544
L LE L L N ++ ++ G +L+ +DLSFN + ++ F +L L+
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404
Query: 545 HNRLRSLP-RDVFSN-TIIEKLDISYNQ 570
H+ L+ + VF + + LDIS+
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Score = 111 bits (279), Expect = 5e-26
Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 13/257 (5%)
Query: 305 HNNLFHF--NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
N + N+ K + LS N L + S +F++ EL + LS +++I+ ++++L
Sbjct: 16 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
+++ ++L+ N I+ + AF L +L KL + L ++ + + LN++
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE---LNVA 132
Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD---SLRKLYLDFNEIKHL 479
+N I + + ++ LDLS+N+IQ + L+ L L N + +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 480 DATAFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISM---LTGEQFYFS 535
AF + L L+L +N ++ V+K G+ L++ L E L
Sbjct: 193 QPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 536 FKLRILNISHNRLRSLP 552
L L I RL L
Sbjct: 252 EGLCNLTIEEFRLAYLD 268
Score = 73.2 bits (180), Expect = 9e-14
Identities = 53/308 (17%), Positives = 106/308 (34%), Gaps = 46/308 (14%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ-GIFNSKLRELEITGKDLKFIDP 61
L++ + ++ L++ +T + + ++++ +N + LE+
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY-SNV 120
++ L T+ + S + ++E LDLS N LS +
Sbjct: 322 LKLKSLK-----RLTFTSNKGGNAFS--EVDLPSLE--FLDLSRNGLSFKGCCSQSDFGT 372
Query: 121 TKLQHL-----GTTILKDREKLLSNLETLLLRCNKITDL-NGNLFRHLQKSIVKAKKNNN 174
T L++L G + L LE L + + + + ++F L
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL------------ 420
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
NL L + +F L +L+ L ++ N Q ++F
Sbjct: 421 -------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIF 466
Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
L L++S +L++L+ L M +N +K++ + LTSL I
Sbjct: 467 TELRNLTFLDLSQCQLEQ--LSPTAF-NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523
Query: 295 NLEYNKIS 302
L N
Sbjct: 524 WLHTNPWD 531
Score = 56.6 bits (137), Expect = 1e-08
Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 57/231 (24%)
Query: 2 TLDLSHNKLSVLNMATLY-SNVTKLQHLGTTILKGDQLQGIFN-----SKLRELEITGKD 55
LDLS N LS + T L++L L + + + + +L L+ +
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYL---DLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 56 LKFIDP-SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
LK + S F ++ + L I++T +G+F+ + ++E L ++ N +
Sbjct: 408 LKQMSEFSVFLSLRNL--IYLDISHTHTRVAFNGIFNGLSSLE--VLKMAGNSFQENFLP 463
Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
+++ L NL L L ++ L+ F L
Sbjct: 464 DIFTE------------------LRNLTFLDLSQCQLEQLSPTAFNSL------------ 493
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225
S+L+ L + N++ + +F L +LQ++ L N
Sbjct: 494 -------------SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 35.5 bits (82), Expect = 0.049
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-------SKLRELEITG 53
+ LD+SH V + ++ L+ L + G+ Q F L L+++
Sbjct: 424 IYLDISHTHTRVAFNGIF-NGLSSLEVL---KMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 54 KDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLS 109
L+ + P+AF+++ + L L + + Q++ +P G+FD++ +++ + L N
Sbjct: 480 CQLEQLSPTAFNSLSS---LQVLNMASNQLKSVPDGIFDRLTSLQ--KIWLHTNPWD 531
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 173 bits (440), Expect = 5e-47
Identities = 103/587 (17%), Positives = 205/587 (34%), Gaps = 82/587 (13%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
LDLS N L L + + +LQ L L ++Q I + S L L +TG
Sbjct: 32 NLDLSFNPLRHLGSYSF-FSFPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 56 LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
++ + AF L L T + L + ++ ++ L+++HN + +
Sbjct: 88 IQSLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLK--ELNVAHNLIQSFKLP 142
Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
+SN L+NLE L L NKI + R L +
Sbjct: 143 EYFSN------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQ---------- 174
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
+ +L L N + + F+ + L +L+L N + +
Sbjct: 175 -----------MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL-NVMKTCI 221
Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY------SLYNL 288
L++ + F + L L L ++ + + Y L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T+++ +L I ++ + ++F + + L N + +LK L +
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFG----WQHLELVNCKFGQFPTLKLKSLKRLT-----F 332
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY--PNAFVNLPNLVKLDLQDNKLKDFNLNV 406
K S +L ++ + LS N + + + +L LDL N + + N
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN- 391
Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
F + + L+ ++ + + E + + LD+S+ + SL
Sbjct: 392 FLGLEQLEH---LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSL 447
Query: 467 RKLYLDFNEIK-HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
L + N + + F L L L L + + F + +LQ++++S N
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 526 MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI--IEKLDISYNQ 570
L + L++L+ S N + + + + + L+++ N
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554
Score = 144 bits (364), Expect = 8e-37
Identities = 72/397 (18%), Positives = 151/397 (38%), Gaps = 27/397 (6%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L + + L L N + L F LQ L LS ++Q IE + L L +
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLIL 83
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
+ N + L++L+ L N+ ++ N+ + +L +L +N+ +N I
Sbjct: 84 T---GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL----NTITLSYNLLKSIKTTSFKN 361
+ F+ L+ + LS+N ++ I L ++ ++ LS N + I+ +FK
Sbjct: 141 LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 362 LNNMLNIVLSFNQIKY-IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN 420
+ + + L N + L L L + ++ + ++ + NL
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 421 LSNNYITNLYENDKKQAPI-----YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE 475
+ + L + + S L + I+ V ++ + L L +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNCK 315
Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM--LTGEQFY 533
+L L S + N + + +P+L+ +DLS N +S + +
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 534 FSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
+ L+ L++S N + ++ + +E LD ++
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Score = 140 bits (356), Expect = 9e-36
Identities = 90/448 (20%), Positives = 166/448 (37%), Gaps = 55/448 (12%)
Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
L + + L L N + L F L+ L L
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFS-------------------------FPELQVLDLS 60
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
+I + ++ L +L L L+ N +Q L F LQ L + S E
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 257 YYILNKNLNTLEWLAMDNNNIKNI-RNYSLYNLTSLNYINLEYNKISKIHNNLFHF--NI 313
+L TL+ L + +N I++ NLT+L +++L NKI I+ +
Sbjct: 119 PI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK-SIKTTSFKNLNNM------L 366
+ LS N + I+ F ++ L+ +TL N ++ T + L + L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
+ ++ +A L NL + + L + ++ + +L + I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486
+ + + L+L N + + P L++ L F K +A + +
Sbjct: 295 ERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSL------KRLTFTSNKGGNAFSEVD 345
Query: 487 LDVLELLSLEHNNIAV--VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544
L LE L L N ++ ++ G +L+ +DLSFN + ++ F +L L+
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQ 404
Query: 545 HNRLRSL-PRDVFSN-TIIEKLDISYNQ 570
H+ L+ + VF + + LDIS+
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Score = 131 bits (332), Expect = 1e-32
Identities = 57/320 (17%), Positives = 119/320 (37%), Gaps = 19/320 (5%)
Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
+ + L + N ++++ +YS ++ L ++L +I I + + L + L+
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLILTG 85
Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI-YPNAF 383
N ++ + F L L + L S++ +L + + ++ N I+ P F
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP-MNLNLSNNYITNLYENDKKQAPIYIK 442
NL NL LDL NK++ + ++L+LS N + + K+ I +
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLH 203
Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE------IKHLDATAFGNLDVLELLSLE 496
L L NN + L L E ++ D +A L L +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 497 HNNI---AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553
+ + F + N+ L I + + F ++F + L + + + P
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT 321
Query: 554 DVFSNTIIEKLDISYNQDKI 573
+ +++L + N+
Sbjct: 322 LKLKS--LKRLTFTSNKGGN 339
Score = 130 bits (329), Expect = 3e-32
Identities = 85/510 (16%), Positives = 184/510 (36%), Gaps = 65/510 (12%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHL--GTTILKGDQLQGIFN--SKLRELEITGKDLK 57
L L+ L + ++ L+ L +++ +L F+ + L L+++ ++
Sbjct: 104 KLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 58 FIDPSAFDNIDA--CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
I + + +L+L ++ + + G F + I L L +N S+ M T
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLRNNFDSLNVMKT 219
Query: 116 LYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNN 175
+ L+ + + + + + L ++ +
Sbjct: 220 CIQGLAGLE------------VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 176 N--EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
+ D + D L+N+ + L I + F + + Q L L K
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF-----GQFP 320
Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI--KNIRNYSLYNLTSL 291
+ L+ L F SN+ +L +LE+L + N + K + S + TSL
Sbjct: 321 TLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 292 NYINLEYNKISKIHNNLFH----------------------FNIHKRLKEIRLSNNYLEL 329
Y++L +N + + +N F + L + +S+ + +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 330 IESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388
+ F L L + ++ N ++ F L N+ + LS Q++ + P AF +L +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN 448
L L++ N + + + S Q L+ S N+I + + + P + L+L+
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQV---LDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 449 NRIQ-EVPVNFLQTFADSLRKLYLDFNEIK 477
N + R+L ++ ++
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERME 582
Score = 107 bits (270), Expect = 9e-25
Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 20/282 (7%)
Query: 305 HNNLFHF--NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
N + N+ K + LS N L + S +F++ EL + LS +++I+ ++++L
Sbjct: 16 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
+++ ++L+ N I+ + AF L +L KL + L ++ + + LN++
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE---LNVA 132
Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA---DSLRKLYLDFNEIKHL 479
+N I + + ++ LDLS+N+IQ + L+ L L N + +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 480 DATAFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEIS---MLTGEQFYFS 535
AF + L L+L +N ++ V+K G+ L++ L E L
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 536 FKLRILNISHNRLRSL------PRDVFSN-TIIEKLDISYNQ 570
L L I RL L D+F+ T + +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Score = 95.9 bits (239), Expect = 5e-21
Identities = 67/423 (15%), Positives = 151/423 (35%), Gaps = 57/423 (13%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
L L +N S+ M T + L+ L + + N L+ D
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHR---LVLGEFRNEGN------------LEKFDK 248
Query: 62 SAFDNIDACYDLTLKIT-NTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
SA + + ++ + LF+ + N+ + L + + +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS--SFSLVSVTIERVKDFSYNFGW 306
Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF-RHLQKSIVKAKKNNNNNEDQ 179
L+ + + L +L+ L NK + + L+ + +N + +
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE--FLDLSRNGLSFKGC 364
Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
S + ++L+ L L N + ++ N F L L+ L + L+ + +VF
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRN 422
Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-NIRNYSLYNLTSLNYINLEY 298
L L+IS + I N L++LE L M N+ + N L +L +++L
Sbjct: 423 LIYLDISHTHTRV--AFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
++ ++ F+ L+ + +S+N +++ + L L + S N + + K
Sbjct: 480 CQLEQLSPTAFNS--LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 359 FKNLNNML---------------------------NIVLSFNQIKYIYPNAFVNLPNLVK 391
++ + L +++ +++ P+ +P ++
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLS 596
Query: 392 LDL 394
L++
Sbjct: 597 LNI 599
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 172 bits (438), Expect = 6e-47
Identities = 70/344 (20%), Positives = 139/344 (40%), Gaps = 27/344 (7%)
Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
I+ N VF + + + ++ E + LN + + N+ ++ + L
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFE------DITLNNQKIVTFKNSTMRKLPAALLD 72
Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
+ + +NL +I +I F + ++++ + N + + F N+ L + L
Sbjct: 73 SFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130
Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
N L S+ F N + + +S N ++ I + F +L L L N+L +L++
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190
Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
++ + N+S N ++ L PI ++ LD S+N I V L
Sbjct: 191 IPSLF------HANVSYNLLSTL------AIPIAVEELDASHNSINVVRGPVNV----EL 234
Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM 526
L L N + N L + L +N + ++ F+ M L+ + +S N +
Sbjct: 235 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
Query: 527 LTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
L L++L++SHN L + R+ +E L + +N
Sbjct: 293 LNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335
Score = 127 bits (320), Expect = 3e-31
Identities = 79/363 (21%), Positives = 137/363 (37%), Gaps = 55/363 (15%)
Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
L+N + + + + + L L + + N+ E+ + ++ L +
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
N I L ++F+++ L L L N L L +F
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIF----------------------- 143
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
N L L+M NNN++ I + + TSL + L N+++ + +L L
Sbjct: 144 ----HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-----PSL 194
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
+S N L T + + S+N + ++ L + L N +
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLTD 246
Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
+N P LV++DL N+L+ + F + + L +SNN + L +
Sbjct: 247 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER---LYISNNRLVALNLYGQPIP 301
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
+K LDLS+N + V N Q D L LYLD N I L + L+ L+L H
Sbjct: 302 --TLKVLDLSHNHLLHVERNQPQF--DRLENLYLDHNSIVTLKLSTHHT---LKNLTLSH 354
Query: 498 NNI 500
N+
Sbjct: 355 NDW 357
Score = 125 bits (315), Expect = 1e-30
Identities = 84/520 (16%), Positives = 172/520 (33%), Gaps = 86/520 (16%)
Query: 44 SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDL 103
+ + + ++ + + D+ L L + QIEE+ + F I++ L +
Sbjct: 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQK--LYM 106
Query: 104 SHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQ 163
N + L + + L L+L N ++ L +F +
Sbjct: 107 GFNAIRYLPPHVFQN-------------------VPLLTVLVLERNDLSSLPRGIFHN-- 145
Query: 164 KSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK 223
L TL + N + + + F+ +LQ L LS N+
Sbjct: 146 -----------------------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 224 LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
L ++ + L +S++L ++ +E L +N+I +R
Sbjct: 183 LTHVD-----LSLIPSLFHANVSYNLLSTLA--------IPIAVEELDASHNSINVVRGP 229
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
LT L L++N ++ + L E+ LS N LE I F ++ L
Sbjct: 230 VNVELTIL---KLQHNNLTDTAW----LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
+ +S N L ++ + + + + LS N + ++ N L L L N +
Sbjct: 283 LYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLK 340
Query: 404 LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA 463
L+ + NL LS+N + D + + +
Sbjct: 341 LSTHHTLK------NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCK 394
Query: 464 DSLRKL------YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII 517
+S + Y+ + A G + ++ + + ++ + + + +
Sbjct: 395 ESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQL 454
Query: 518 DLSFNEISM----LTGEQFYFSFKLRILNISHNRLRSLPR 553
+ NE+ LT EQ L+ L+ + R
Sbjct: 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 162 bits (411), Expect = 4e-44
Identities = 93/398 (23%), Positives = 164/398 (41%), Gaps = 34/398 (8%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L +++ + L N I +LN F L +LQ L + + + +N F L +L++
Sbjct: 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-VIRNNTFRGLSSLIILKL 86
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN--IRNYSLYNLTSLNYINLEYNKISK 303
++ F N L LE L + N+ + LTSL + L N I K
Sbjct: 87 DYNQFLQ--LETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
I F F +R + L+ N ++ I + N + + L L+
Sbjct: 144 IQPASF-FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLS 188
Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
++ ++ + + ++ LDL N K+ F + + +L LSN
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248
Query: 424 NYI--TNLYENDKKQAP---------IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLD 472
+Y ++ + K +K+ DLS ++I + + F D L +L L
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLA 307
Query: 473 FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532
NEI +D AF L L L+L N + + R F + L+++DLS+N I L + F
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367
Query: 533 YFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYN 569
L+ L + N+L+S+P +F T ++K+ + N
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 153 bits (388), Expect = 6e-41
Identities = 86/429 (20%), Positives = 156/429 (36%), Gaps = 63/429 (14%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHL--GTTILKGDQLQGIFN--SKLRELEITGKDLK 57
+DLS N ++ LN T +S + LQ L F S L L++
Sbjct: 34 YVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92
Query: 58 FIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
++ AF+ + LTL N L F + ++E L L N + + A+ +
Sbjct: 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE--MLVLRDNNIKKIQPASFF 150
Query: 118 SNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNE 177
N + L L NK+ + + Q + ++
Sbjct: 151 LN------------------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT- 191
Query: 178 DQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVF 237
+ + ++ L LS N +
Sbjct: 192 --------------LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES---------- 227
Query: 238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNL--TSLNYIN 295
+ + F + IL+ + N + N K+ N++ L + + +
Sbjct: 228 ----MAKRFFDAIAGTKIQSLILSNSYNMGSSF--GHTNFKDPDNFTFKGLEASGVKTCD 281
Query: 296 LEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIK 355
L +KI + ++F L+++ L+ N + I+ + F+ L L + LS N L SI
Sbjct: 282 LSKSKIFALLKSVFSH--FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339
Query: 356 TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT 415
+ F+NL+ + + LS+N I+ + +F+ LPNL +L L N+LK +F +TS Q
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399
Query: 416 PMNLNLSNN 424
+ L N
Sbjct: 400 ---IWLHTN 405
Score = 150 bits (381), Expect = 6e-40
Identities = 80/392 (20%), Positives = 151/392 (38%), Gaps = 42/392 (10%)
Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
L +++ + L N I +LN F LQ + ++ + LS+L L L
Sbjct: 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF----SLFNS 252
N+ L F L NL+ L+L+ L L+ N F L++L + + +
Sbjct: 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Query: 253 NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLN--YINLEYNKISKIHNNLFH 310
+ F N+ L + N +K+I L N + + L + ++
Sbjct: 148 SFF------LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 311 ------FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI-------------TLSYNLL 351
+ + + LS N + + F++ I + +
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 352 KSIKTTSFKNL--NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
K +FK L + + LS ++I + + F + +L +L L N++ + N F
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLR 467
+T LNLS N++ ++ + ++ LDLS N I+ + +F +L+
Sbjct: 322 LTHLLK---LNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHIRALGDQ---SFLGLPNLK 374
Query: 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499
+L LD N++K + F L L+ + L N
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
Score = 147 bits (372), Expect = 9e-39
Identities = 81/331 (24%), Positives = 128/331 (38%), Gaps = 29/331 (8%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSN 324
+ ++ + N+I + S L L ++ +E I NN F L ++L
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL--SSLIILKLDY 88
Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKS--IKTTSFKNLNNMLNIVLSFNQIKYIYPN- 381
N +E+ F L L +TL+ L + FK L ++ +VL N IK I P
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPI-- 439
F+N+ LDL NK+K N K L LS+ + ++ E
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF-TLLRLSSITLQDMNEYWLGWEKCGN 207
Query: 440 -----YIKSLDLSNNRIQEVP------------VNFLQTFADSLRKLYLDFNEIKHLDAT 482
I +LDLS N +E + L K D
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 483 AFGNLDV--LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI 540
F L+ ++ L + I ++K F +L+ + L+ NEI+ + F+ L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 541 LNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
LN+S N L S+ +F N +E LD+SYN
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358
Score = 111 bits (279), Expect = 2e-26
Identities = 51/287 (17%), Positives = 103/287 (35%), Gaps = 31/287 (10%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVL 370
+ + + LS N + + +F L++L + + I+ +F+ L++++ + L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNL--NVFSNITSKQTPMNLNLSNNYITN 428
+NQ + AF L NL L L L L N F +TS + L L +N I
Sbjct: 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM---LVLRDNNIKK 143
Query: 429 LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS-LRKLYLDFNEIKHLDAT----- 482
+ LDL+ N+++ + L F L L ++ ++
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
Query: 483 ---AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL-------------QIIDLSFNEISM 526
+ L L N + + F
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 527 LTGEQFY--FSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
F + ++ ++S +++ +L + VFS+ T +E+L ++ N+
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Score = 64.4 bits (157), Expect = 4e-11
Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 48/221 (21%)
Query: 5 LSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAF 64
++ K+ L ++ Y+ + H +G+ S ++ +++ + + S F
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295
Query: 65 DNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ 124
+ LTL +I ++ F + ++ L+LS N L ++ +
Sbjct: 296 SHFTDLEQLTL--AQNEINKIDDNAFWGLTHLL--KLNLSQNFLGSIDSRMFEN------ 345
Query: 125 HLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDRE 184
L LE L L N I L F L
Sbjct: 346 -------------LDKLEVLDLSYNHIRALGDQSFLGL---------------------- 370
Query: 185 KLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225
NL+ L L N++ + +F L +LQ++ L N
Sbjct: 371 ---PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 167 bits (424), Expect = 5e-44
Identities = 92/561 (16%), Positives = 189/561 (33%), Gaps = 75/561 (13%)
Query: 44 SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQM--TL 101
++L+ L D +LT ++ + + + +Q
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDE-----ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401
Query: 102 DLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL---------LSNLETLLLRCNKIT 152
DL + ++ +++ T I ++ L+ L+ + + T
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFT 461
Query: 153 DLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR-CNKITDLNGNLFRHL 211
N + S + + L +L + L C +T L L+ L
Sbjct: 462 YDNIAVDWEDANS------DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DL 514
Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLA 271
LQ L+++ N+ + + L ++
Sbjct: 515 PELQSLNIACNRG------ISAAQLKADWTRLADDED--------------TGPKIQIFY 554
Query: 272 MDNNNIKNI-RNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELI 330
M NN++ + SL + L ++ +NK+ + F + +L +++L N +E I
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA----FGTNVKLTDLKLDYNQIEEI 610
Query: 331 ESDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP-- 387
D ++ + S+N LK I + K++ M ++ S+N+I N ++
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670
Query: 388 ---NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI--- 441
N + L N+++ F +F+ + T + LSNN +T++ EN K
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPIST---IILSNNLMTSIPENSLKPKDGNYKNT 727
Query: 442 ---KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG-----NLDVLELL 493
++DL N++ + +F T L + + +N +
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787
Query: 494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553
E N I P+L + + N+I + + +L IL+I+ N S+
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADNPNISIDV 844
Query: 554 DVFSNTI---IEKLDISYNQD 571
I + L QD
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQD 865
Score = 152 bits (385), Expect = 4e-39
Identities = 75/472 (15%), Positives = 152/472 (32%), Gaps = 67/472 (14%)
Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
L+ L+ L + T + ++ + L L
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405
Query: 198 NKITDLNG------NLFRHLYNLQELSLSFN------------KLQIIELNSNVFDVFEK 239
+ I + L + Q +L+ KLQII ++ F
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465
Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
E + S + + NL L + + N LY+L L +N+ N
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525
Query: 300 KISKIHNNLFH-------FNIHKRLKEIRLSNNYL-ELIESDTFYNLKELNTITLSYNLL 351
+ + +++ + N L E S + + +L + +N +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585
Query: 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
+ + +F + ++ L +NQI+ I + + L NKLK
Sbjct: 586 RHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI--------- 634
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD----SLR 467
P N + + + S+D S N+I N + D +
Sbjct: 635 ----PNIFNAKS--VYVM------------GSVDFSYNKIGSEGRNISCSMDDYKGINAS 676
Query: 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV-------VKRTFIGMPNLQIIDLS 520
+ L +NEI+ F + + L +N + + + L IDL
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736
Query: 521 FNEISMLTGEQFYFSFK-LRILNISHNRLRSLPRDVFSNTIIEKLDISYNQD 571
FN+++ L+ + + L +++S+N S P +++ ++ I + +D
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788
Score = 118 bits (298), Expect = 4e-28
Identities = 74/529 (13%), Positives = 166/529 (31%), Gaps = 89/529 (16%)
Query: 2 TLDLSHNKLSVL-NMATLYSNVTKLQHLGTTILKGD--QLQGIFNSKLRELEITGKDLKF 58
L + +V + + ++ ++ ++ +L ++ +
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410
Query: 59 ---IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
+ P D+ + D + +I + + ++ ++ + +++ + N+A
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ-RLTKLQ--IIYFANSPFTYDNIAV 467
Query: 116 LY------------------SNVTKLQHL------GTTILKDREKLLSNLETLLLRCNKI 151
+ SN+ L + T L D L L++L + CN+
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527
Query: 152 TDLN--GNLFRHLQKSIVKAKK------NNNN-----NEDQVSDREKL------------ 186
+ L K NN + KL
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587
Query: 187 ------LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
L L L N+I ++ + ++ L S NKL+ I N +
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVM 646
Query: 241 QLLEISFSLFNS--NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEY 298
++ S++ S + + + + N I+ + ++ I L
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 299 NKISKIHNNLFH-----FNIHKRLKEIRLSNNYL-ELIESDTFYNLKELNTITLSYNLLK 352
N ++ I N + L I L N L L + L L+ + +SYN
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 353 SI-----KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVF 407
S ++ K N+I +P P+L++L + N ++ + +
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826
Query: 408 SNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS--LDLSNNRIQEV 454
+ L++++N ++ D YI++ L ++ Q++
Sbjct: 827 PQLYI------LDIADNPNISI---DVTSVCPYIEAGMYVLLYDKTQDI 866
Score = 95.7 bits (238), Expect = 1e-20
Identities = 63/409 (15%), Positives = 124/409 (30%), Gaps = 51/409 (12%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
++L + L + L L + + ++ K +
Sbjct: 495 DVELYNCPNM----TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA--------- 541
Query: 62 SAFDNIDACYDLT-LKITNTQIEELP-SGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
D+ D + + +EE P S K+ + LD HNK+ L +
Sbjct: 542 ---DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG--LLDCVHNKVRHLE---AFGT 593
Query: 120 VTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
KL L I +D +E L NK+ + + +
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653
Query: 174 NN-----NEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228
N S + N T+ L N+I LF + + LS N + I
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713
Query: 229 LNS-----NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
NS + L +++ F+ S L L + + N +
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNCFSSFPT- 770
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFH-----FNIHKRLKEIRLSNNYLELIESDTFYNL 338
N + L + + + ++ N + L ++++ +N + ++ L
Sbjct: 771 QPLNSSQLKAFGIRHQRDAE-GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL 829
Query: 339 KELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
L+ ++ N SI TS VL +++ + I + +
Sbjct: 830 YILD---IADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 86.1 bits (213), Expect = 1e-17
Identities = 37/273 (13%), Positives = 83/273 (30%), Gaps = 30/273 (10%)
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
R+ + L+ + D L EL ++ + ++I
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 376 KYIYPNAFV-NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDK 434
+ Y F+ L DL + + + + ++L + I NL N
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNP-----EMKPIKKDSRISLKDTQIGNLT-NRI 437
Query: 435 KQAPIYI------KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLD 488
I + + +N+ + A D+ + + ++ NL
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNI------AVDWEDANSDYAKQYENEELSWSNLK 491
Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF---------KLR 539
L + L + + +P LQ ++++ N + ++ K++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 540 ILNISHNRLRSLPRDV--FSNTIIEKLDISYNQ 570
I + +N L P + LD +N+
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584
Score = 30.6 bits (69), Expect = 1.9
Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 42/175 (24%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-----SKLRELEI----- 51
T+DL NKL+ L+ + + L ++ + + S+L+ I
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNM---DVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788
Query: 52 -TGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLS 109
G + P+ C L L+I + I ++ L ++ LD++ N
Sbjct: 789 AEGNRILRQWPTGITT---CPSLIQLQIGSNDIRKVDEKLTPQLY-----ILDIADNPNI 840
Query: 110 VLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQK 164
+++ ++ + +L +K D+ G +++
Sbjct: 841 SIDVTSVCPYIEAG-------------------MYVLLYDKTQDIRGCDALGIER 876
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 149 bits (379), Expect = 9e-40
Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 38/264 (14%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
++ Y+NL N I I + F L+ ++L N + IE F L LNT+ L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRH--LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVF 407
N L I + +F+ L+ + + L N I+ I AF +P+L++LDL + KL+ + F
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 408 SNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--S 465
+ + +K L+L I+++P
Sbjct: 193 EGLFN----------------------------LKYLNLGMCNIKDMP-----NLTPLVG 219
Query: 466 LRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
L +L + N + +F L L+ L + ++ ++++ + F G+ +L ++L+ N +S
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 526 MLTGEQFYFSFKLRILNISHNRLR 549
L + F L L++ HN
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPWN 303
Score = 140 bits (354), Expect = 3e-36
Identities = 62/338 (18%), Positives = 125/338 (36%), Gaps = 94/338 (27%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
+ ++ ++++ + N + L+L N I + ++ F
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPS---NTRYLNLMEN--NIQMIQADTF------------- 95
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
++L+ LE L + N+I+ I + L SLN + L N ++ I
Sbjct: 96 --------------RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-- 139
Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
S F L +L + L N ++SI + +F + +++
Sbjct: 140 ------------------------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175
Query: 368 IVLS-FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
+ L +++YI AF L NL L+L +K ++ + +
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVG-------------- 219
Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAF 484
++ L++S N E+ +F SL+KL++ +++ ++ AF
Sbjct: 220 --------------LEELEMSGNHFPEIRPG---SFHGLSSLKKLWVMNSQVSLIERNAF 262
Query: 485 GNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L L L+L HNN++ + F + L + L N
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 102 bits (255), Expect = 2e-23
Identities = 63/349 (18%), Positives = 107/349 (30%), Gaps = 128/349 (36%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
L+L N + ++ F L LE
Sbjct: 79 YLNLMENNIQMIQ------------------------ADTF-RHLHHLE----------- 102
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
L++ I ++ G F+ + ++ TL+L N L+V+
Sbjct: 103 ------------VLQLGRNSIRQIEVGAFNGLASLN--TLELFDNWLTVIPSGAFEY--- 145
Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
LS L L LR N I + F
Sbjct: 146 ----------------LSKLRELWLRNNPIESIPSYAFNR-------------------- 169
Query: 182 DREKLLSNLETL-LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
+ +L L L K+ ++ F L+NL+ L+L ++ +
Sbjct: 170 -----VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------------ 212
Query: 241 QLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
+ + L LE L M N+ IR S + L+SL + + ++
Sbjct: 213 -----NLT--------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253
Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
+S I N F L E+ L++N L + D F L+ L + L +N
Sbjct: 254 VSLIERNAFDGL--ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 92.5 bits (230), Expect = 3e-20
Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 45/268 (16%)
Query: 39 QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
QGI ++ R L + +++ I F ++ L L I ++ G F+ + ++
Sbjct: 71 QGIPSN-TRYLNLMENNIQMIQADTFRHLHHLEVLQL--GRNSIRQIEVGAFNGLASLN- 126
Query: 99 MTLDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKDREKLLSNLETL-LLRCNKI 151
TL+L N L+V+ ++KL+ L +I + +L L L K+
Sbjct: 127 -TLELFDNWLTVIPSGAF-EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184
Query: 152 TDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHL 211
++ F L +K N + + L LE L + N ++ F L
Sbjct: 185 EYISEGAFEGLFN--LKYLNLGMCNIKDMPNLTPL-VGLEELEMSGNHFPEIRPGSFHGL 241
Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLA 271
+L++L + +++ +IE N FD L +L L
Sbjct: 242 SSLKKLWVMNSQVSLIE--RNAFD---------------------------GLASLVELN 272
Query: 272 MDNNNIKNIRNYSLYNLTSLNYINLEYN 299
+ +NN+ ++ + L L ++L +N
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 91.0 bits (226), Expect = 1e-19
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
+ + + EVP + R L L N I+ + A F +L LE+L L N+I
Sbjct: 57 SKVVCTRRGLSEVPQGIPS----NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI- 560
+ F G+ +L ++L N ++++ F + KLR L + +N + S+P F+
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Query: 561 IEKLDIS-YNQ 570
+ +LD+ +
Sbjct: 173 LMRLDLGELKK 183
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 149 bits (377), Expect = 1e-39
Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 38/264 (14%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T+ +NL N+I I N F + L+ ++LS N++ IE F L LNT+ L
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKH--LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVF 407
N L +I +F L+ + + L N I+ I AF +P+L +LDL + +L + F
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 408 SNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--S 465
+++ ++ L+L+ ++E+P
Sbjct: 182 EGLSN----------------------------LRYLNLAMCNLREIP-----NLTPLIK 208
Query: 466 LRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
L +L L N + + +F L L+ L + + I V+ + F + +L I+L+ N ++
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 526 MLTGEQFYFSFKLRILNISHNRLR 549
+L + F L +++ HN
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPWN 292
Score = 141 bits (357), Expect = 9e-37
Identities = 65/330 (19%), Positives = 121/330 (36%), Gaps = 83/330 (25%)
Query: 70 CYDLTLKI--TNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG 127
C + K+ + E+P G+ L+L N++ ++ + +
Sbjct: 41 CSNQFSKVICVRKNLREVPDGISTNTR-----LLNLHENQIQIIKVNSFKH--------- 86
Query: 128 TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLL 187
L +LE L L N I + F L
Sbjct: 87 ----------LRHLEILQLSRNHIRTIEIGAFNGL------------------------- 111
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
+NL TL L N++T + F +L L+EL L N ++ I S F+ L+ L++
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP--SYAFNRIPSLRRLDLG- 168
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
+ + I + L++L Y+NL + +I
Sbjct: 169 -------------------------ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201
Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
+ +L E+ LS N+L I +F L L + + + ++ I+ +F NL +++
Sbjct: 202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
I L+ N + + + F L +L ++ L N
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 137 bits (348), Expect = 1e-35
Identities = 70/335 (20%), Positives = 122/335 (36%), Gaps = 88/335 (26%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
+ ++ + ++ + N + L+L N QI + N F
Sbjct: 43 NQFSKVICVRKNLREVPDGIST---NTRLLNLHEN--QIQIIKVNSF------------- 84
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
K+L LE L + N+I+ I + L +LN + L N+++ I N
Sbjct: 85 --------------KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130
Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
F + +LKE+ L NN +E I S F + L + L
Sbjct: 131 AFVYL--SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG-------------------- 168
Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
++ YI AF L NL L+L L+ + + +
Sbjct: 169 ---ELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIK--------------- 208
Query: 428 NLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
+ LDLS N + + Q L+KL++ ++I+ ++ AF NL
Sbjct: 209 -------------LDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNL 254
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L ++L HNN+ ++ F + +L+ I L N
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 89.0 bits (221), Expect = 5e-19
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
+ ++EVP + R L L N+I+ + +F +L LE+L L N+I
Sbjct: 46 SKVICVRKNLREVPDGIS----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI- 560
+ F G+ NL ++L N ++ + F + KL+ L + +N + S+P F+
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 561 IEKLDIS-YNQ 570
+ +LD+ +
Sbjct: 162 LRRLDLGELKR 172
Score = 87.1 bits (216), Expect = 2e-18
Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 114/330 (34%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
L+L N++ ++ + + ++ L+ L L + ++ G FN + L LE+
Sbjct: 68 LLNLHENQIQIIKVNSF-KHLRHLEIL---QLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
L I AF + ++++E L L +N + +
Sbjct: 124 LTTIPNGAFVYL------------SKLKE----------------LWLRNNPIESIPSYA 155
Query: 116 LYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNN 175
+ + L+ L L +++ ++ F
Sbjct: 156 F-NRIPSLRRL-----------------DLGELKRLSYISEGAFEG-------------- 183
Query: 176 NEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD 235
LSNL L L + ++ L L EL LS N L I F
Sbjct: 184 -----------LSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIR--PGSF- 227
Query: 236 VFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYIN 295
+ L L+ L M + I+ I + NL SL IN
Sbjct: 228 --------------------------QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 296 LEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
L +N ++ + ++LF L+ I L +N
Sbjct: 262 LAHNNLTLLPHDLFTPL--HHLERIHLHHN 289
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 145 bits (368), Expect = 3e-39
Identities = 63/316 (19%), Positives = 119/316 (37%), Gaps = 50/316 (15%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
L + NN+I +R L L + L NKISKIH F ++L+++ +S N
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL--RKLQKLYISKN 112
Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVN 385
+L I + +L EL + N+I+ + F
Sbjct: 113 HLVEIPPNLPSSLVELR---------------------------IHDNRIRKVPKGVFSG 145
Query: 386 LPNLVKLDLQDNKLKDFNL--NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
L N+ +++ N L++ F + L +S +T + K P +
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNY----LRISEAKLTGI----PKDLPETLNE 197
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
L L +N+IQ + + L + L +L L N+I+ ++ + L L L L++N ++
Sbjct: 198 LHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQF------YFSFKLRILNISHNRL--RSLPRDV 555
V + LQ++ L N I+ + F +++ +N + +
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315
Query: 556 FSN-TIIEKLDISYNQ 570
F T + +
Sbjct: 316 FRCVTDRLAIQFGNYK 331
Score = 141 bits (358), Expect = 7e-38
Identities = 53/258 (20%), Positives = 106/258 (41%), Gaps = 11/258 (4%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + L NN + + D F L+ L + L N + I +F L + + +S
Sbjct: 51 EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
N + I PN +LV+L + DN+++ VFS + + + + N + N
Sbjct: 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNC---IEMGGNPLENSGF 164
Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE 491
+ + L +S ++ +P + + +L +L+LD N+I+ ++ L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPE----TLNELHLDHNKIQAIELEDLLRYSKLY 220
Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
L L HN I ++ + +P L+ + L N++S + L+++ + N + +
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKV 279
Query: 552 PRDVFSNTIIEKLDISYN 569
+ F YN
Sbjct: 280 GVNDFCPVGFGVKRAYYN 297
Score = 138 bits (351), Expect = 8e-37
Identities = 50/255 (19%), Positives = 103/255 (40%), Gaps = 15/255 (5%)
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
L+ ++ S+ L+ + + + L+ L N + ++ FK L ++ +VL N+I
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
I+ AF L L KL + N L + N+ S++ L + +N I + +
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE------LRIHDNRIRKVPKGVFSG 145
Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFAD-SLRKLYLDFNEIKHLDATAFGNLDVLELLSL 495
+ +++ N ++ F L L + ++ + L L L
Sbjct: 146 LR-NMNCIEMGGNPLENSGFE-PGAFDGLKLNYLRISEAKLTGIPKDLPETL---NELHL 200
Query: 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV 555
+HN I + + L + L N+I M+ F LR L++ +N+L +P +
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Query: 556 FSNTIIEKLDISYNQ 570
+++ + + N
Sbjct: 261 PDLKLLQVVYLHTNN 275
Score = 137 bits (347), Expect = 3e-36
Identities = 68/345 (19%), Positives = 114/345 (33%), Gaps = 78/345 (22%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
+ L L+ N I++L + F+ L +L L L NK+ I F
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--EKAFS------------ 99
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
L L+ L + N++ I +L L + N+I K+
Sbjct: 100 ---------------PLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKG 141
Query: 308 LFHFNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
+F + + I + N LE E F LK LN + +S L I + LN +
Sbjct: 142 VFS--GLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNEL 198
Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
L N+I+ I + L +L L N+++ S + +
Sbjct: 199 ---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT------------- 242
Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
++ L L NN++ VP L+ +YL N I + F
Sbjct: 243 ---------------LRELHLDNNKLSRVPAGLPDL--KLLQVVYLHTNNITKVGVNDFC 285
Query: 486 NLDV------LELLSLEHNNIAV--VVKRTFIGMPNLQIIDLSFN 522
+ +SL +N + V TF + + I
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 133 bits (338), Expect = 5e-35
Identities = 64/321 (19%), Positives = 115/321 (35%), Gaps = 52/321 (16%)
Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
+ L L+ N I++L + F+ L +L L+L N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKG-------------------------LQHLYALVLVNN 88
Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS---FSLFNSNEF 255
KI+ ++ F L LQ+L +S N L I N + L L I F
Sbjct: 89 KISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-----LPSSLVELRIHDNRIRKVPKGVF 143
Query: 256 PYYILNKNLNTLEWLAMDNNNIKN--IRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
L + + M N ++N + L LNY+ + K++ I +L
Sbjct: 144 ------SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---- 192
Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
+ L E+ L +N ++ IE + +L + L +N ++ I+ S L + + L N
Sbjct: 193 -ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251
Query: 374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN---LSNNYITNLY 430
++ + P +L L + L N + +N F + N L NN +
Sbjct: 252 KLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310
Query: 431 ENDKKQAPIY-IKSLDLSNNR 450
+ ++ N +
Sbjct: 311 VQPATFRCVTDRLAIQFGNYK 331
Score = 103 bits (259), Expect = 2e-24
Identities = 59/356 (16%), Positives = 103/356 (28%), Gaps = 91/356 (25%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
LDL +N +S L + L L L + + I
Sbjct: 58 LLDLQNNDISELRKDDF-------KGL---------------QHLYALVLVNNKISKIHE 95
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
AF + L + + + E+P L + L + N++ +
Sbjct: 96 KAFSPLRKLQKLYI--SKNHLVEIPPNLPSSLVE-----LRIHDNRIRKVPKGVFSG--- 145
Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITD--LNGNLFRHLQKSIVKAKKNNNNNEDQ 179
L N+ + + N + + F L+ + ++ +
Sbjct: 146 ----------------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI---SEAKLTG 186
Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
+ L L L L NKI + L L L N++++IE +
Sbjct: 187 IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLS---- 238
Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L TL L +DNN + + L +L L + L N
Sbjct: 239 -----------------------FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN 274
Query: 300 KISKIHNNLF----HFNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYN 349
I+K+ N F I L NN + ++ TF + + I
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 64.7 bits (158), Expect = 2e-11
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 39/232 (16%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQ--HLGTTILKGDQLQ-GIFNS-KLRELEITGKDLKF 58
L + N++ + S + + +G L+ + G F+ KL L I+ L
Sbjct: 128 LRIHDNRIRKVPKGVF-SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
I + ++ L + + +I+ + + + L L HN++ ++ +L S
Sbjct: 187 IPKDLPETLN-----ELHLDHNKIQAIELEDLLRYSKLY--RLGLGHNQIRMIENGSL-S 238
Query: 119 NVTKLQHL-----GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
+ L+ L + + L L+ + L N IT + N F + +
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV------- 291
Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKIT--DLNGNLFRHLYNLQELSLSFNK 223
+ + L N + ++ FR + + + K
Sbjct: 292 ------------KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 143 bits (362), Expect = 2e-38
Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 16/256 (6%)
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
L+ ++ S+ LE + D + L+ L N + IK FKNL N+ ++L N+I
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
I P AF L L +L L N+LK+ + + L + N IT + ++
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE------LRVHENEITKVRKSVFNG 143
Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
+ ++L N ++ + F L + + I + +L L
Sbjct: 144 LN-QMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELH 198
Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
L+ N I V + G+ NL + LSFN IS + + LR L++++N+L +P
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258
Query: 555 VFSNTIIEKLDISYNQ 570
+ + I+ + + N
Sbjct: 259 LADHKYIQVVYLHNNN 274
Score = 142 bits (361), Expect = 3e-38
Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 45/337 (13%)
Query: 70 CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTT 129
C+ ++ ++ +E++P L LDL +NK++ + +
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTA-----LLDLQNNKITEIKDGDFKN----------- 74
Query: 130 ILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN 189
L NL TL+L NKI+ ++ F L K ++ + N ++ EK+
Sbjct: 75 --------LKNLHTLILINNKISKISPGAFAPLVK--LERLYLSKNQLKELP--EKMPKT 122
Query: 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
L+ L + N+IT + ++F L + + L N L+ + + F +KL + I+ +
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182
Query: 250 FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF 309
+ I +L L +D N I + SL L +L + L +N IS + N
Sbjct: 183 ITT------IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 310 HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSF------KNLN 363
L+E+ L+NN L + + K + + L N + +I + F
Sbjct: 237 AN--TPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293
Query: 364 NMLNIVLSFNQIKY--IYPNAFVNLPNLVKLDLQDNK 398
+ + L N ++Y I P+ F + + L + K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 140 bits (355), Expect = 2e-37
Identities = 69/322 (21%), Positives = 122/322 (37%), Gaps = 51/322 (15%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L + L L+ NKIT++ F++L NL L L NK+ I F
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFA---------- 97
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
L LE L + N +K + L L + N+I+K+
Sbjct: 98 -----------------PLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVR 137
Query: 306 NNLFHFNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
++F N ++ + L N L+ IE+ F +K+L+ I ++ + +I +L
Sbjct: 138 KSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195
Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
+ L N+I + + L NL KL L N + + +N + L+L+N
Sbjct: 196 E---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE---LHLNN 249
Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD-----SLRKLYLDFNEIKH 478
N + + YI+ + L NN I + N S + L N +++
Sbjct: 250 NKLVKVPGGLADHK--YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307
Query: 479 --LDATAFGNLDVLELLSLEHN 498
+ + F + V + L +
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329
Score = 140 bits (354), Expect = 2e-37
Identities = 56/267 (20%), Positives = 114/267 (42%), Gaps = 19/267 (7%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
++ + L NN + I+ F NLK L+T+ L N + I +F L + + LS
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY- 430
NQ+K + L +L + +N++ +VF+ + + L N + +
Sbjct: 109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIV---VELGTNPLKSSGI 162
Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
EN Q + + +++ I +P SL +L+LD N+I +DA + L+ L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNL 218
Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
L L N+I+ V + P+L+ + L+ N++ + G ++++ + +N + +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISA 277
Query: 551 LPRDVFSNTII-------EKLDISYNQ 570
+ + F + + N
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNP 304
Score = 98.9 bits (247), Expect = 7e-23
Identities = 57/356 (16%), Positives = 106/356 (29%), Gaps = 114/356 (32%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN--SKLRELEITGKDLKFI 59
TL L +NK+S ++ G F KL L ++ LK +
Sbjct: 80 TLILINNKISKIS------------------------PGAFAPLVKLERLYLSKNQLKEL 115
Query: 60 DPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
+ L++ +I ++ +F+ + + ++L N L
Sbjct: 116 PEKMPKTLQ-----ELRVHENEITKVRKSVFNGLNQMI--VVELGTNPLKSS-------- 160
Query: 120 VTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ 179
+ + + L + + IT + L
Sbjct: 161 -----GIENGAFQG----MKKLSYIRIADTNITTIPQGLP-------------------- 191
Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
+L L L NKIT ++ + L NL +L LSFN + ++ +
Sbjct: 192 --------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLA---- 237
Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
N L L ++NN + + L + + + L N
Sbjct: 238 -----------------------NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNN 273
Query: 300 KISKIHNNLFH----FNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYN 349
IS I +N F + L +N ++ I+ TF + + L
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 52.3 bits (126), Expect = 2e-07
Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 70/225 (31%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
+ ++ ++ + L EL + G + +D
Sbjct: 174 SYIRIADTNITTIPQGLP-------------------------PSLTELHLDGNKITKVD 208
Query: 61 PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
++ ++ L L + I + +G ++ L L++NKL +
Sbjct: 209 AASLKGLNNLAKLGL--SFNSISAVDNGSLANTPHLR--ELHLNNNKLVKVPGGL----- 259
Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
++ + L N I+ + N F +
Sbjct: 260 ---------------ADHKYIQVVYLHNNNISAIGSNDFCPPGYN--------------- 289
Query: 181 SDREKLLSNLETLLLRCNKI--TDLNGNLFRHLYNLQELSLSFNK 223
++ + L N + ++ + FR +Y + L K
Sbjct: 290 ----TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 146 bits (370), Expect = 1e-37
Identities = 70/455 (15%), Positives = 154/455 (33%), Gaps = 59/455 (12%)
Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL-LLR 196
L+ L + + N + S + L +L + +
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENS------EYAQQYKTEDLKWDNLKDLTDVEVYN 258
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
C +T L L L +Q ++++ N+ + ++ + P
Sbjct: 259 CPNLTKLPTFLKA-LPEMQLINVACNRG---------------ISGEQLKDDWQALADAP 302
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIR-NYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK 315
++ + + NN+K SL + L + YN++
Sbjct: 303 ------VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE---I 353
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQ 374
+L + L+ N + I ++ +++ ++ ++N LK I K+++ M I S+N+
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 375 IKYIYPNAFVNLP-------NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
I + F L N+ ++L +N++ F +FS + + +NL N +T
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS---INLMGNMLT 470
Query: 428 NLYENDKKQAPIYI------KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
+ +N K S+DL N++ ++ +F T L + L +N
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530
Query: 482 TAFG-----NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
+ + N P+L + + N+I + + +
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITP 587
Query: 537 KLRILNISHNRLRSLPRDVFSNTII-EKLDISYNQ 570
+ +L+I N S+ I + Y++
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
Score = 137 bits (347), Expect = 2e-34
Identities = 70/488 (14%), Positives = 155/488 (31%), Gaps = 64/488 (13%)
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
L L + V ++ + + + F
Sbjct: 109 VLALGSHGEKVNERLFGPKGISANMSD----------EQKQKMRMHYQKTFVDYDPREDF 158
Query: 160 RHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
L K + N++ + + ++ + N IT ++ + R L L++ +
Sbjct: 159 SDLIKDCI----NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYM 213
Query: 220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279
+ + N+ + +E ++ NL L + + N
Sbjct: 214 GNSPF----VAENICEAWENENSEYAQQYKTEDLKW------DNLKDLTDVEVYNCPNLT 263
Query: 280 IRNYSLYNLTSLNYINLEYNKISKI------HNNLFHFNIHKRLKEIRLSNNYL-ELIES 332
L L + IN+ N+ L + ++++ I + N L
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
+ +K+L + YN L+ +F + + ++ L++NQI I N + L
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382
Query: 393 DLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451
NKLK N+ +++ ++ S N I ++ +
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSA---IDFSYNEIGSVDGKNFDPLDPTPFKGI------ 433
Query: 452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM 511
++ + L N+I F L ++L N + + K +
Sbjct: 434 -------------NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480
Query: 512 P-------NLQIIDLSFNEISMLTGEQFYFSF-KLRILNISHNRLRSLPRDVFSNTIIEK 563
L IDL FN+++ L+ + + L +++S+N P +++ ++
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540
Query: 564 LDISYNQD 571
I +D
Sbjct: 541 FGIRNQRD 548
Score = 129 bits (325), Expect = 1e-31
Identities = 54/399 (13%), Positives = 133/399 (33%), Gaps = 25/399 (6%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
+ L L + + L L+ L+L + ++ E + + +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 247 FSLFN-SNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
+ F Y ++ + L ++++ + S I N I+ +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
+ +L++ + N+ + + + NL ++
Sbjct: 200 KAVMRL---TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-----DLKWDNLKDL 251
Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-----NLNVFSNITSKQTPMNLN 420
++ + P LP + +++ N+ + ++ + +
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD 480
+ N + Q + L+ N+++ F L L L +N+I +
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS--EIKLASLNLAYNQITEIP 369
Query: 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIG-MPNLQIIDLSFNEISMLTGEQFYF----- 534
A G + +E LS HN + + + + ID S+NEI + G+ F
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 535 --SFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
+ +N+S+N++ P+++FS + + +++ N
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468
Score = 99.0 bits (247), Expect = 6e-22
Identities = 44/337 (13%), Positives = 119/337 (35%), Gaps = 31/337 (9%)
Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
+ + L+++ ++ LT L + L + I + + +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 323 SNNYLEL----IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI 378
+ ++ D + +L ++ + + S + I N I ++
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198
Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL--------- 429
A + L L + + ++ N+ + + + NL
Sbjct: 199 -SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257
Query: 430 YENDKKQAPIYI------KSLDLSNNRIQEVPVNFLQ-------TFADSLRKLYLDFNEI 476
+ + P ++ + ++++ NR + ++ +Y+ +N +
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317
Query: 477 KHLDA-TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
K T+ + L +L +N + + F L ++L++N+I+ + F+
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT 376
Query: 536 FKLRILNISHNRLRSLPRDVF--SNTIIEKLDISYNQ 570
++ L+ +HN+L+ +P S +++ +D SYN+
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Score = 88.2 bits (219), Expect = 2e-18
Identities = 59/398 (14%), Positives = 124/398 (31%), Gaps = 83/398 (20%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNS--KLRELEITGKDLKFI 59
+ + +N L + T + KL L +QL+G + +L
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLE---CLYNQLEGKLPAFGSEIKLA--------- 356
Query: 60 DPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
+L + QI E+P+ E +E L +HNKL + +
Sbjct: 357 --------------SLNLAYNQITEIPANFCGFTEQVE--NLSFAHNKLKYIPNIFDAKS 400
Query: 120 VTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ 179
+S + + N+I ++G F L + K
Sbjct: 401 ------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK----------- 431
Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELN-----SNVF 234
N+ ++ L N+I+ LF L ++L N L I N + F
Sbjct: 432 -------GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
L +++ F+ L L + + N+ N ++L
Sbjct: 485 KNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGF 541
Query: 295 NLEYNKISKIHNNLFH-----FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
+ + ++ N + L ++++ +N + + N+ L+ + N
Sbjct: 542 GIRNQRDAQ-GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD---IKDN 597
Query: 350 LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
SI + +L +++ + I +++
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 28.5 bits (64), Expect = 7.3
Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 40/174 (22%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLG----------TTILKGDQLQGIFNSKLRELEI 51
++DL NKL+ L+ + + L + T L L+G R+
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA-- 549
Query: 52 TGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSV 110
G P C LT L+I + I ++ + I LD+ N
Sbjct: 550 QGNRTLREWPEGITL---CPSLTQLQIGSNDIRKVNEKITPNIS-----VLDIKDNPNIS 601
Query: 111 LNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQK 164
++++ + +L +K D+ G +++
Sbjct: 602 IDLSYVCP-------------------YIEAGMYMLFYDKTQDIRGCDALDIKR 636
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 141 bits (356), Expect = 2e-37
Identities = 57/314 (18%), Positives = 114/314 (36%), Gaps = 51/314 (16%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L +++L L N+IT ++ + + NLQ L L+ N + IE + F
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE--EDSFS---------- 97
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
+L +LE L + N + N+ + L+SL ++NL N +
Sbjct: 98 -----------------SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
++ K + + I+ F L L + + + L+S + S K++ N+
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200
Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
+++L Q + ++ L+L+D L F+ + S + N
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN-- 258
Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
+ +++ + +V Q L +L N++K + F
Sbjct: 259 ------------------VKITDESLFQVMKLLNQI--SGLLELEFSRNQLKSVPDGIFD 298
Query: 486 NLDVLELLSLEHNN 499
L L+ + L N
Sbjct: 299 RLTSLQKIWLHTNP 312
Score = 128 bits (323), Expect = 7e-33
Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 26/292 (8%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
++ L + NN I I N L +L + L N I+ I + F L+ + LS N
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL--GSLEHLDLSYN 110
Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTS-FKNLNNMLNIVLSFN-QIKYIYPNAF 383
YL + S F L L + L N K++ TS F +L + + + I F
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
L L +L++ + L+ + +I + L L L E ++
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSH---LILHMKQHILLLEIFVDVTS-SVEC 226
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
L+L + + F+E+ + + + + ++ V
Sbjct: 227 LELRDTDLDTFH-----------------FSELSTGETNSLIKKFTFRNVKITDESLFQV 269
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV 555
+K + L ++ S N++ + F L+ + + N +
Sbjct: 270 MK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320
Score = 125 bits (316), Expect = 7e-32
Identities = 52/268 (19%), Positives = 110/268 (41%), Gaps = 15/268 (5%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
+ + +K + LSNN + I + L + L+ N + +I+ SF +L ++ ++ LS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYITNLY 430
+N + + + F L +L L+L N K ++FS++T Q N + T +
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN--MDTFTKIQ 166
Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
D +++ L++ + +Q L++ ++ L L + L +
Sbjct: 167 RKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSV 224
Query: 491 ELLSLEHNNIA--------VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
E L L ++ + I + + ++ + + S L L
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELE 283
Query: 543 ISHNRLRSLPRDVFSN-TIIEKLDISYN 569
S N+L+S+P +F T ++K+ + N
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 121 bits (306), Expect = 1e-30
Identities = 58/332 (17%), Positives = 126/332 (37%), Gaps = 67/332 (20%)
Query: 78 TNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL 137
++ + +PSGL + ++ +LDLS+N+++ ++ + L
Sbjct: 39 SSGSLNSIPSGLTEAVK-----SLDLSNNRITYISNSDLQR------------------- 74
Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
NL+ L+L N I + + F L +LE L L
Sbjct: 75 CVNLQALVLTSNGINTIEEDSFSSL-------------------------GSLEHLDLSY 109
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSN--EF 255
N +++L+ + F+ L +L L+L N + + S +F L L+I +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS----LFSHLTKLQILRVGNMDTFTKI 165
Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK 315
L LE L +D +++++ SL ++ +++++ L + +
Sbjct: 166 QRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT--S 222
Query: 316 RLKEIRLSNNYLEL--------IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
++ + L + L+ E+++ + ++ L + ++ +L
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLE 281
Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
+ S NQ+K + F L +L K+ L N
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
Score = 121 bits (305), Expect = 2e-30
Identities = 51/258 (19%), Positives = 105/258 (40%), Gaps = 16/258 (6%)
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
S+ L I S +K L+ LS N + I + + N+ +VL+ N I I +
Sbjct: 38 GSSGSLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
+F +L +L LDL N L + + + F ++S LNL N L E +
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF---LNLLGNPYKTLGETSLFSHLTKL 151
Query: 442 KSLDLSNN-RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ L + N ++ L +L +D ++++ + + ++ + L L
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210
Query: 501 AVVVKRTFIGMPNLQIIDLS--------FNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
++++ +++ ++L F+E+S F R + I+ L +
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270
Query: 553 RDVFSNTIIEKLDISYNQ 570
+ + + + +L+ S NQ
Sbjct: 271 KLLNQISGLLELEFSRNQ 288
Score = 97.9 bits (244), Expect = 2e-22
Identities = 56/348 (16%), Positives = 112/348 (32%), Gaps = 92/348 (26%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
+LDLS+N+++ ++ + L Q L+ L +T + I+
Sbjct: 56 SLDLSNNRITYISNSDL-------QRC---------------VNLQALVLTSNGINTIEE 93
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
+F ++ + L L + L S F + ++ L+L N L +L+S++T
Sbjct: 94 DSFSSLGSLEHLDLS--YNYLSNLSSSWFKPLSSLTF--LNLLGNPYKTLGETSLFSHLT 149
Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
KLQ L + + T + F
Sbjct: 150 KLQILR-----------------VGNMDTFTKIQRKDFAG-------------------- 172
Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
L+ LE L + + + + + N+ L L + ++ DV ++
Sbjct: 173 -----LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVE 225
Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
LE+ + ++ F + + SL + + + +
Sbjct: 226 CLELRDTDLDTFHF-------------------SELSTGETNSLIKKFTFRNVKITDESL 266
Query: 302 SKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
++ L + L E+ S N L+ + F L L I L N
Sbjct: 267 FQVMKLLNQIS---GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 74.0 bits (182), Expect = 2e-14
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 27/243 (11%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
L L+ N ++ + + S++ L+HL L + L F S L L + G
Sbjct: 80 ALVLTSNGINTIEEDSF-SSLGSLEHLD---LSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135
Query: 56 LKFIDP-SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
K + S F ++ L + ++ F + +E L++ + L
Sbjct: 136 YKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRKDFAGLTFLE--ELEIDASDLQSYEPK 192
Query: 115 TLYSNVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGN-----LFRHLQ 163
+L ++ + HL +L+ + S++E L LR + + + L
Sbjct: 193 SL-KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251
Query: 164 KSIVKAKKNNNNNE-DQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFN 222
K + QV +S L L N++ + +F L +LQ++ L N
Sbjct: 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Query: 223 KLQ 225
Sbjct: 312 PWD 314
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 138 bits (350), Expect = 5e-37
Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 14/243 (5%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
+ S+ L L NK+ L +F L L +LSLS N L S L+ L++
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 246 SFSLFNS--NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL-YNLTSLNYINLEYNKIS 302
SF+ + + F L LE L ++N+K + +S+ +L +L Y+++ +
Sbjct: 86 SFNGVITMSSNF------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 303 KIHNNLFHFNIHKRLKEIRLS-NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKN 361
N +F+ L+ ++++ N++ E D F L+ L + LS L+ + T+F +
Sbjct: 140 VAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 362 LNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL 421
L+++ + +S N + + L +L LD N + + S LNL
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA--FLNL 255
Query: 422 SNN 424
+ N
Sbjct: 256 TQN 258
Score = 128 bits (325), Expect = 1e-33
Identities = 46/258 (17%), Positives = 98/258 (37%), Gaps = 13/258 (5%)
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
EIR ++ L + + + L L N L+S+ F L + + LS N + +
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 378 IY--PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
+ +L LDL N + + + F + + L+ ++ + + E
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEH---LDFQHSNLKQMSEFSVF 122
Query: 436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN-EIKHLDATAFGNLDVLELLS 494
+ + LD+S+ + SL L + N ++ F L L L
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
L + + F + +LQ++++S N L + L++L+ S N + + +
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 555 VFSN--TIIEKLDISYNQ 570
+ + + L+++ N
Sbjct: 242 ELQHFPSSLAFLNLTQND 259
Score = 78.9 bits (195), Expect = 3e-16
Identities = 54/272 (19%), Positives = 97/272 (35%), Gaps = 42/272 (15%)
Query: 39 QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
GI +S LE+ L+ + FD + L+L + S +++
Sbjct: 24 TGIPSS-ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK- 81
Query: 99 MTLDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKDRE-KLLSNLETLLLRCNKI 151
LDLS N + ++ + + +L+HL + + L NL L +
Sbjct: 82 -YLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 152 TDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHL 211
+F L V N+ E+ + D L NL L L ++ L+ F L
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLA 271
+LQ L++S N ++ + + LN+L+ L
Sbjct: 199 SSLQVLNMSHNNFFSLD--TFPYK---------------------------CLNSLQVLD 229
Query: 272 MDNNNIKNIRNYSLYNL-TSLNYINLEYNKIS 302
N+I + L + +SL ++NL N +
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 131 bits (331), Expect = 1e-34
Identities = 52/239 (21%), Positives = 106/239 (44%), Gaps = 33/239 (13%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
+ + + + L N+I+ + FR NL L L N L I+ + F L+ L++
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDL 87
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
S DN ++++ + + L L+ ++L+ + ++
Sbjct: 88 S--------------------------DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
LF L+ + L +N L+ + DTF +L L + L N + S+ +F+ L+++
Sbjct: 122 PGLFRG--LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179
Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
++L N++ +++P+AF +L L+ L L N L + + + Q L L++N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY---LRLNDN 235
Score = 128 bits (325), Expect = 1e-33
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 34/238 (14%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + I L N + + + +F + L + L N+L I +F L + + LS
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88
Query: 372 FN-QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
N Q++ + P F L L L L L++ +F + +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA------------------ 130
Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLD 488
++ L L +N +Q +P + TF D +L L+L N I + AF L
Sbjct: 131 ----------LQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
L+ L L N +A V F + L + L N +S L E L+ L ++ N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 126 bits (319), Expect = 6e-33
Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 38/260 (14%)
Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
++ L+ + + + L N + + SF+ N+ + L N
Sbjct: 10 NEPKVTTSCPQQGLQAVPVGIPAASQRIF---LHGNRISHVPAASFRACRNLTILWLHSN 66
Query: 374 QIKYIYPNAFVNLPNLVKLDLQDN-KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEN 432
+ I AF L L +LDL DN +L+ + F +
Sbjct: 67 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR-------------------- 106
Query: 433 DKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVL 490
+ +L L +QE+ F +L+ LYL N ++ L F +L L
Sbjct: 107 --------LHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
L L N I+ V +R F G+ +L + L N ++ + F +L L + N L +
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 551 LPRDVFSN-TIIEKLDISYN 569
LP + + ++ L ++ N
Sbjct: 216 LPTEALAPLRALQYLRLNDN 235
Score = 125 bits (317), Expect = 1e-32
Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 55/261 (21%)
Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
+ + + + L N+I+ + FR NL L L
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFRA-------------------------CRNLTILWLH 64
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
N + ++ F L L++L LS N Q+ ++ F
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDN-AQLRSVDPATFH--------------------- 102
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
L L L +D ++ + L +L Y+ L+ N + + ++ F
Sbjct: 103 ------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL--GN 154
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
L + L N + + F L L+ + L N + + +F++L ++ + L N +
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 377 YIYPNAFVNLPNLVKLDLQDN 397
+ A L L L L DN
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235
Score = 122 bits (309), Expect = 1e-31
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 7/189 (3%)
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN-KISKIHNNLFHFNIHKRLKEI 320
+ L L + +N + I + L L ++L N ++ + FH RL +
Sbjct: 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL--GRLHTL 110
Query: 321 RLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380
L L+ + F L L + L N L+++ +F++L N+ ++ L N+I +
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
AF L +L +L L N++ + + F ++ T L L N ++ L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT---LYLFANNLSALPTEALAPLR-A 226
Query: 441 IKSLDLSNN 449
++ L L++N
Sbjct: 227 LQYLRLNDN 235
Score = 115 bits (290), Expect = 7e-29
Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 33/204 (16%)
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
L N+I ++ +F NL L L N L + F+ + + L+LS+N
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ---LDLSDN----- 90
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNL 487
+++ V TF L L+LD ++ L F L
Sbjct: 91 -------------------AQLRSVDPA---TFHGLGRLHTLHLDRCGLQELGPGLFRGL 128
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR 547
L+ L L+ N + + TF + NL + L N IS + F L L + NR
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 548 LRSLPRDVFSN-TIIEKLDISYNQ 570
+ + F + + L + N
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANN 212
Score = 98.1 bits (245), Expect = 6e-23
Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 10/181 (5%)
Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451
L+ + + + + L N I+++ + + L L +N +
Sbjct: 16 TSCPQQGLQAVPVGIPAASQR------IFLHGNRISHVPAASFRACR-NLTILWLHSNVL 68
Query: 452 QEVPVNFLQTFADSLRKLYLDFNE-IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
+ A L +L L N ++ +D F L L L L+ + + F G
Sbjct: 69 ARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 511 MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYN 569
+ LQ + L N + L + F L L + NR+ S+P F +++L + N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 570 Q 570
+
Sbjct: 188 R 188
Score = 93.9 bits (234), Expect = 1e-21
Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 72/262 (27%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
+ + +I +P+ F N+ L L N L+ ++ A + + L+ L L D
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLT--ILWLHSNVLARIDAAAF-TGLALLEQL---DLSD 89
Query: 134 REKL----------LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR 183
+L L L TL L + +L LFR L
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--------------------- 128
Query: 184 EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL 243
+ L+ L L+ N + L + FR L NL L L N++ + F
Sbjct: 129 ----AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFR-------- 174
Query: 244 EISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK 303
L++L+ L + N + ++ ++ +L L + L N +S
Sbjct: 175 -------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 304 IHNNLFHFNIHKRLKEIRLSNN 325
+ + L+ +RL++N
Sbjct: 216 LPTEALAPL--RALQYLRLNDN 235
Score = 87.0 bits (216), Expect = 4e-19
Identities = 55/298 (18%), Positives = 89/298 (29%), Gaps = 98/298 (32%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
+ L N++S + A+ + L L + L ID
Sbjct: 36 RIFLHGNRISHVPAASF-------RAC---------------RNLTILWLHSNVLARIDA 73
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
+AF + L L N Q+ + F + + TL L L L
Sbjct: 74 AAFTGLALLEQLDLS-DNAQLRSVDPATFHGLGRLH--TLHLDRCGLQELGPGLFRG--- 127
Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
L+ L+ L L+ N + L + FR
Sbjct: 128 ----------------LAALQYLYLQDNALQALPDDTFRD-------------------- 151
Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
L NL L L N+I+ + FR L++L L L N++ + + F
Sbjct: 152 -----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--PHAFR------ 198
Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
+L L L + NN+ + +L L +L Y+ L N
Sbjct: 199 ---------------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 133 bits (337), Expect = 7e-34
Identities = 66/398 (16%), Positives = 142/398 (35%), Gaps = 35/398 (8%)
Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
+ + ++ + + + + + +L + +N++EL LS N L I + F K
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--AADLAPFTK 59
Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L+LL +S SN + ++L+TL L ++NN ++ L S+ ++ N
Sbjct: 60 LELLNLS-----SNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109
Query: 300 KISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TS 358
IS++ + + K I L+NN + ++ + + L N + ++
Sbjct: 110 NISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN 418
+ + + ++ L +N I + L LDL NKL F +
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTW--- 218
Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
++L NN + + + + ++ DL N + F+ + R + +K
Sbjct: 219 ISLRNNKLVLIEKALRF--SQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKK 274
Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL-----QIIDLSFNEISMLTGEQFY 533
L V L + + L ++ +E L E+
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334
Query: 534 FSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
+ + R ++ + R++ V L+
Sbjct: 335 QA-RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371
Score = 96.1 bits (239), Expect = 3e-21
Identities = 70/499 (14%), Positives = 153/499 (30%), Gaps = 68/499 (13%)
Query: 43 NSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLD 102
++ + ++T LK S + +L L + + ++ + +E L+
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDL--SGNPLSQISAADLAPFTKLEL--LN 64
Query: 103 LSHNKLSVL-------NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN 155
LS N L + TL N +Q L ++ETL N I+ ++
Sbjct: 65 LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISRVS 115
Query: 156 GNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN-GNLFRHLYNL 214
+ + + + NN E S ++ L L+ N+I +N L L
Sbjct: 116 CSRGQGKKNIYL----ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 215 QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNS--NEFPYYILNKNLNTLEWLAM 272
+ L+L +N + ++ F KL+ L++S + EF ++ + W+++
Sbjct: 172 EHLNLQYNFIYDVKGQVV----FAKLKTLDLSSNKLAFMGPEF------QSAAGVTWISL 221
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK----------------- 315
NN + I +L +L + +L N F +
Sbjct: 222 RNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280
Query: 316 ----RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK----NLNNMLN 367
E + + L L + + +T + N
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340
Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
I Q + + + + L+ + L + N + + +
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400
Query: 428 NLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
+ E ++ L R +E+ V +++R + ++ L
Sbjct: 401 HATEEQSP-----LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLK 455
Query: 488 DVLELLSLEHNNIAVVVKR 506
+ L + ++
Sbjct: 456 KLNGEADLALASANATLQE 474
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 128 bits (323), Expect = 4e-33
Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 18/240 (7%)
Query: 332 SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
+ N ++ + LK + ++ N+ + LS N + I L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451
L+L N L + ++++ +T L+L+NNY+ L I++L +NN I
Sbjct: 63 LNLSSNVLYE--TLDLESLSTLRT---LDLNNNYVQEL------LVGPSIETLHAANNNI 111
Query: 452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG- 510
V + Q + +YL N+I L G ++ L L+ N I V
Sbjct: 112 SRVSCSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167
Query: 511 MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
L+ ++L +N I + G+ KL+ L++S N+L + + S + + + N+
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225
Score = 124 bits (314), Expect = 6e-32
Identities = 57/375 (15%), Positives = 118/375 (31%), Gaps = 76/375 (20%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
+ + + + + +L + +N++EL LS N L I
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS------------------ 50
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
+ + LE L + +N + L +L++L ++L N + ++
Sbjct: 51 -----AADL------APFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV 97
Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
++ + +NN + + K + L+ N + ++ + +
Sbjct: 98 G-------PSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147
Query: 367 NIVLSFNQIKYIYPNAFV-NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
+ L N+I + + L L+LQ N + D V
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV------------------ 189
Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
L K+LDLS+N++ + F + + L N++ ++ A
Sbjct: 190 FAKL------------KTLDLSSNKLAFMGPEFQSA--AGVTWISLRNNKLVLIEK-ALR 234
Query: 486 NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISH 545
LE L N R F N ++ ++ + LTG+ + +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 546 NRLRSLPRDVFSNTI 560
LP I
Sbjct: 294 YCCEDLPAPFADRLI 308
Score = 123 bits (312), Expect = 1e-31
Identities = 57/290 (19%), Positives = 106/290 (36%), Gaps = 20/290 (6%)
Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
N + + + + +L +KE+ LS N L I + +L + L
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSA--WNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
S N+L ++L+ + + L+ N ++ + P++ L +N + + +
Sbjct: 66 SSNVLYET--LDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR 118
Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
N+ L+NN IT L + D+ ++ LDL N I V L +D+L
Sbjct: 119 GQGKK------NIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM 526
L L +N I + L+ L L N +A + F + I L N++ +
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL 228
Query: 527 LTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPG 576
+ FS L ++ N F + ++ K G
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277
Score = 109 bits (274), Expect = 1e-26
Identities = 54/385 (14%), Positives = 121/385 (31%), Gaps = 77/385 (20%)
Query: 131 LKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNL 190
+ + ++ + + + + + +L + N+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSA-------------------------WNV 36
Query: 191 ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLF 250
+ L L N ++ ++ L+ L+LS N L + L++
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---------------ETLDLE---- 77
Query: 251 NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH 310
+L+TL L ++NN ++ L S+ ++ N IS++ +
Sbjct: 78 ------------SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRG- 119
Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIV 369
+ K I L+NN + ++ + + L N + ++ + + + ++
Sbjct: 120 ----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
L +N I + L LDL NKL F + ++L NN + +
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTW---ISLRNNKLVLI 229
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV 489
+ + ++ DL N + F+ + R + +K L V
Sbjct: 230 EKALRF--SQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTV 285
Query: 490 LELLSLEHNNIAVVVKRTFIGMPNL 514
L + + L
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIAL 310
Score = 103 bits (259), Expect = 2e-24
Identities = 51/351 (14%), Positives = 116/351 (33%), Gaps = 56/351 (15%)
Query: 116 LYSNVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKA 169
+ N + + L + N++ L L N ++ ++
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-------- 56
Query: 170 KKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIEL 229
+ LE L L N + + L L+ L L+ N +Q + +
Sbjct: 57 -----------------FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97
Query: 230 NSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLT 289
+ ++ L + + + + + + + NN I +R+ +
Sbjct: 98 GPS-------IETLHAANNNISR------VSCSRGQGKKNIYLANNKITMLRDLDEGCRS 144
Query: 290 SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
+ Y++L+ N+I ++ L+ + L N++ ++ +L T+ LS N
Sbjct: 145 RVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN 201
Query: 350 LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
L + F++ + I L N++ I A NL DL+ N L F
Sbjct: 202 KLAFM-GPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDF-- 257
Query: 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQ 460
+ ++ + L ++++ + +++P F
Sbjct: 258 --FSKNQRVQTVAKQTVKKLTGQNEEECTV-PTLGHYGAYCCEDLPAPFAD 305
Score = 87.7 bits (218), Expect = 3e-19
Identities = 55/391 (14%), Positives = 116/391 (29%), Gaps = 93/391 (23%)
Query: 44 SKLRELEITGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLD 102
++ + ++T LK S + +++ L ++ + ++ + +E L+
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQS---AWNVKELDLSGNPLSQISAADLAPFTKLE--LLN 64
Query: 103 LSHNKLSVL-------NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN 155
LS N L + TL N +Q L ++ETL N I+ ++
Sbjct: 65 LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISRVS 115
Query: 156 GNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQ 215
+ + + + L NKIT L +Q
Sbjct: 116 CSRGQ----------------------------GKKNIYLANNKITMLRDLDEGCRSRVQ 147
Query: 216 ELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNN 275
L L N++ + L + +TLE L + N
Sbjct: 148 YLDLKLNEIDTVNFAE----------------------------LAASSDTLEHLNLQYN 179
Query: 276 NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF 335
I +++ L ++L NK++ + + I L NN L LI
Sbjct: 180 FIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNNKLVLI-EKAL 233
Query: 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395
+ L L N + + +++ + L + +
Sbjct: 234 RFSQNLEHFDLRGNGFHCG---------TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
L + ++ + + L +++
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315
Score = 39.6 bits (93), Expect = 0.002
Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 19/170 (11%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNSKLRELEITGKDLK 57
LDL N++ +N A L ++ L+HL L+ + + + +KL+ L+++ L
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHL---NLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Query: 58 FIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATL 116
F+ P + +T + + N ++ + +N+E DL N +
Sbjct: 205 FMGP----EFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLE--HFDLRGNGFHCGTLRDF 257
Query: 117 YSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSI 166
+S ++Q + +K L+ + L
Sbjct: 258 FSKNQRVQTVAKQTVKK----LTGQNEEECTVPTLGHYGAYCCEDLPAPF 303
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 125 bits (317), Expect = 1e-32
Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 13/215 (6%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
S ++L +N + + + F L+ + LS ++ IE + +L L+T+ L+
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNL-NVF 407
N ++S+ +F L+++ +V + + +L L +L++ N ++ F L F
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 408 SNITSKQTPMNLNLSNNYITNLYEND---KKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD 464
SN+T+ + L+LS+N I ++Y D Q P+ SLDLS N + + F +
Sbjct: 146 SNLTNLEH---LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKE 199
Query: 465 -SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
L++L LD N++K + F L L+ + L N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 113 bits (286), Expect = 2e-28
Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 7/214 (3%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
N+ K + LS N L + S +F++ EL + LS +++I+ ++++L+++ ++L+
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
N I+ + AF L +L KL + L ++ + + LN+++N I +
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE---LNVAHNLIQSFKL 141
Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA---DSLRKLYLDFNEIKHLDATAFGNLD 488
+ ++ LDLS+N+IQ + L+ L L N + + AF +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L+ L+L+ N + V F + +LQ I L N
Sbjct: 202 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 107 bits (269), Expect = 3e-26
Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 38/208 (18%)
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
LSFN ++++ +F + P L LDL +++ + +++
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH----------------- 77
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNL 487
+ +L L+ N IQ + + F+ SL+KL + L+ G+L
Sbjct: 78 -----------LSTLILTGNPIQSLALG---AFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 488 DVLELLSLEHNNIAVV-VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI----LN 542
L+ L++ HN I + F + NL+ +DLS N+I + ++ + L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 543 ISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
+S N + + F +++L + NQ
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQ 211
Score = 105 bits (265), Expect = 1e-25
Identities = 50/263 (19%), Positives = 94/263 (35%), Gaps = 60/263 (22%)
Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
+ + L L N + L F L+ L L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSF-------------------------PELQVLDLSRC 62
Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY 258
+I + ++ L +L L L+ N +Q L F
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFS----------------------- 97
Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK 318
L++L+ L N+ ++ N+ + +L +L +N+ +N I +F+ L+
Sbjct: 98 ----GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLE 152
Query: 319 EIRLSNNYLELIESDTFYNLKELNTIT----LSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
+ LS+N ++ I L ++ + LS N + I+ +FK + + + L NQ
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQ 211
Query: 375 IKYIYPNAFVNLPNLVKLDLQDN 397
+K + F L +L K+ L N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234
Score = 104 bits (261), Expect = 4e-25
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 30/227 (13%)
Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
LS+N L+ + + SF + + + LS +I+ I A+ +L +L L L N ++ L
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 406 VFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD- 464
FS ++S Q L + +L EN +K L++++N IQ + + F++
Sbjct: 95 AFSGLSSLQK---LVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNL 148
Query: 465 -SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE 523
+L L L N+I+ + T L + LL+L +DLS N
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS--------------------LDLSLNP 188
Query: 524 ISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYN 569
++ + F +L+ L + N+L+S+P +F T ++K+ + N
Sbjct: 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 79.2 bits (196), Expect = 1e-16
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P K+LDLS N ++ + +F L+ L L EI+ ++ A+ +L L L L
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR-DVF 556
N I + F G+ +LQ + ++ L L+ LN++HN ++S + F
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 557 SN-TIIEKLDISYNQ 570
SN T +E LD+S N+
Sbjct: 146 SNLTNLEHLDLSSNK 160
Score = 78.9 bits (195), Expect = 2e-16
Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 36/229 (15%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
LDLS N L L + + + +LQ L L ++Q G + S L L +TG +
Sbjct: 33 LDLSFNPLRHLG-SYSFFSFPELQVLD---LSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 57 KFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
+ + AF L L T + L + ++ +++ L+++HN + +
Sbjct: 89 QSLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLKE--LNVAHNLIQSFKLPE 143
Query: 116 LYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN--N 173
+SN L+NLE L L NKI + R L + + +
Sbjct: 144 YFSN------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFN 222
N + + L+ L L N++ + +F L +LQ++ L N
Sbjct: 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 70.4 bits (173), Expect = 1e-13
Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
+ ++P N S + L L FN ++HL + +F + L++L L I
Sbjct: 10 ITYQCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TI 560
+ + + +L + L+ N I L F L+ L L SL +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 561 IEKLDISYNQ 570
+++L++++N
Sbjct: 126 LKELNVAHNL 135
Score = 43.4 bits (103), Expect = 9e-05
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNSKLRELEITGKDL- 56
L+++HN + + +SN+T L+HL L +++Q L ++ + L
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDL-RVLHQMPLLNLSLD 183
Query: 57 ------KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106
FI P AF I L + Q++ +P G+FD++ +++ + L N
Sbjct: 184 LSLNPMNFIQPGAFKEIRL---KELALDTNQLKSVPDGIFDRLTSLQ--KIWLHTN 234
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 130 bits (329), Expect = 1e-32
Identities = 84/488 (17%), Positives = 174/488 (35%), Gaps = 39/488 (7%)
Query: 44 SKLRELEITGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLD 102
K L I+ + + S ++ L L I++ +I+ L +F + +E LD
Sbjct: 21 QKTTILNISQNYISELWTSDILSLS---KLRILIISHNRIQYLDISVFKFNQELE--YLD 75
Query: 103 LSHNKLSVL------NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNG 156
LSHNKL + N+ L + L +S L+ L L + +
Sbjct: 76 LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGN---MSQLKFLGLSTTHLEKSSV 132
Query: 157 NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQE 216
HL S V E + + L + T L T+ + +
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPE---GLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189
Query: 217 LSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNN 276
+L + ++ + ++ L L+ + L N + + +
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI----LQLVW 245
Query: 277 IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFY 336
+ +S+ N+ L++ +L K L ++ ++ +S +
Sbjct: 246 HTTVWYFSISNVKLQG--QLDFRDFDYSGTSL------KALSIHQVVSDVFGFPQSYIYE 297
Query: 337 NLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD 396
+N + + + + ++ L++ S N + +L L L LQ
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357
Query: 397 NKLKDFNL--NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV 454
N+LK+ + + + + S Q L++S N ++ + + SL++S+N + +
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQ---LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Query: 455 PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL 514
+ ++ L L N+IK + L+ L+ L++ N + V F + +L
Sbjct: 415 I---FRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSL 470
Query: 515 QIIDLSFN 522
Q I L N
Sbjct: 471 QKIWLHTN 478
Score = 117 bits (294), Expect = 4e-28
Identities = 83/512 (16%), Positives = 172/512 (33%), Gaps = 71/512 (13%)
Query: 72 DLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTIL 131
+ + + + +P L K L++S N +S L + + S
Sbjct: 2 EFLVDRSKNGLIHVPKDLSQKTT-----ILNISQNYISELWTSDILS------------- 43
Query: 132 KDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLE 191
LS L L++ N+I L+ ++F+ Q LE
Sbjct: 44 ------LSKLRILIISHNRIQYLDISVFKFNQ-------------------------ELE 72
Query: 192 TLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN 251
L L NK+ ++ NL+ L LSFN + + F +L+ L +S +
Sbjct: 73 YLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLE 128
Query: 252 SNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHF 311
+ + + L + + L + + + +
Sbjct: 129 KSSV--LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV-L 370
L+ + + S L +L T NL + T++ + +L +V
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246
Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN--ITSKQTPMNLNLSNNYITN 428
+ I + D LK +++ + Q+ + SN I N
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306
Query: 429 LYENDKKQAPI-------YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
+ + + LD SNN + + L L L N++K L
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSK 365
Query: 482 TA--FGNLDVLELLSLEHNNI-AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKL 538
A + L+ L + N++ K +L +++S N ++ ++
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRI 423
Query: 539 RILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
++L++ N+++S+P+ V +++L+++ NQ
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455
Score = 59.9 bits (145), Expect = 1e-09
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
L++S N I E+ + + + + LR L + N I++LD + F LE L L H
Sbjct: 20 SQKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLRSLPRDVF 556
N + + + NL+ +DLSFN L ++F +L+ L +S L
Sbjct: 79 NKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135
Query: 557 SNTIIEKLDISYNQDKIRP 575
++ I K+ + +
Sbjct: 136 AHLNISKVLLVLGETYGEK 154
Score = 51.0 bits (122), Expect = 7e-07
Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 32/247 (12%)
Query: 12 VLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACY 71
V + Y +++ ++ G + G L ++ F ++
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 72 DLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHL--GTT 129
++ T++ + KI LD S+N L+ + ++T+L+ L
Sbjct: 304 IKNFTVSGTRM--VHMLCPSKISPFL--HLDFSNNLLTDT-VFENCGHLTELETLILQMN 358
Query: 130 ILKDREKL------LSNLETLLLRCNKIT-DLNGNLFRHLQKSIVKAKKNNNNNEDQVSD 182
LK+ K+ + +L+ L + N ++ D KS++ ++N D +
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-KSLLSLNMSSNILTDTIFR 417
Query: 183 REKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFN--------------KLQIIE 228
L ++ L L NKI + + L LQEL+++ N LQ I
Sbjct: 418 --CLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474
Query: 229 LNSNVFD 235
L++N +D
Sbjct: 475 LHTNPWD 481
Score = 49.1 bits (117), Expect = 3e-06
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 30/130 (23%)
Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502
+D S N + VP + + L + N I L + +L
Sbjct: 4 LVDRSKNGLIHVPKDL----SQKTTILNISQNYISELWTSDILSL--------------- 44
Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIE 562
L+I+ +S N I L F F+ +L L++SHN+L + N ++
Sbjct: 45 ---------SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN--LK 93
Query: 563 KLDISYNQDK 572
LD+S+N
Sbjct: 94 HLDLSFNAFD 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 129 bits (326), Expect = 4e-32
Identities = 81/457 (17%), Positives = 160/457 (35%), Gaps = 31/457 (6%)
Query: 59 IDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL------ 111
+ +L L++++ +I L +F +++E LD+SHN+L +
Sbjct: 67 LRMPDISF---LSELRVLRLSHNRIRSLDFHVFLFNQDLEY--LDVSHNRLQNISCCPMA 121
Query: 112 NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKK 171
++ L + L L+ L L L K L+ HL S +
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGN---LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178
Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
+ + + ++ ++ N L L + + + + + L L LS KL
Sbjct: 179 VSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237
Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
+ + E + + E + K ++ NI N+ +
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297
Query: 292 NYIN--LEYNKISKIHNNLFH------FNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
Y L+ I + N +F +++ + LS + I +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
+ + N+ L + ++L N +K + N+ L+ D L N
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLN 416
Query: 404 LNVFSNITSKQTPM-NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+ + + + LNLS+N +T + P +K LDL NNRI +P +
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKDVTH-- 471
Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499
+L++L + N++K + F L L+ + L N
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 118 bits (297), Expect = 2e-28
Identities = 83/477 (17%), Positives = 160/477 (33%), Gaps = 55/477 (11%)
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
L LS N +S L M + LS L L L N+I L+ ++F
Sbjct: 56 ALSLSQNSISELRMPDISF-------------------LSELRVLRLSHNRIRSLDFHVF 96
Query: 160 RHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL-NGNLFRHLYNLQELS 218
Q ++ ++N +S +++L L L N L F +L L L
Sbjct: 97 LFNQD--LEYLDVSHNRLQNISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152
Query: 219 LSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN---SNEFPYYILNKNLNTLEWLAMDNN 275
LS K + L L I L + + N L + N+
Sbjct: 153 LSAAKFR-----QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 276 NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF 335
N S+ L L N++ N + F + + + ++ ++E +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 336 YNLKELNTITLSYN------LLKSIKTTSFKNLNNMLNIV----LSFNQIKYIYPNAFVN 385
+ + Y + + I F L + + + +
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 386 LPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLD 445
+ L + ++ + +S LN + N T+ +++L
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTF---LNFTQNVFTDSVFQGCSTLK-RLQTLI 383
Query: 446 LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL----DVLELLSLEHNNIA 501
L N ++ L T ++ L + L++ A+ + + +L+L N +
Sbjct: 384 LQRNGLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
V R P ++++DL N I + + + L+ LN++ N+L+S+P VF
Sbjct: 442 GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQ-ALQELNVASNQLKSVPDGVFDR 495
Score = 102 bits (256), Expect = 3e-23
Identities = 59/401 (14%), Positives = 132/401 (32%), Gaps = 27/401 (6%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L + L L N I++L L L+ L LS N+++ L+ +VF + L+ L++
Sbjct: 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDV 107
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKI 304
S + + I + +L L + N+ + + NLT L ++ L K ++
Sbjct: 108 SHNRLQN------ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
Query: 305 HNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
++H + L + +++ E+++ + L ++ ++N
Sbjct: 162 DLLPVA-HLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNA 219
Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK--QTPMNLNLS 422
+ ++ LS ++ + + + + ++ + K Q +
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279
Query: 423 NNYITNL-YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS-------LRKLYLDFN 474
I NL + L + I+ V ++ + L +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339
Query: 475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYF 534
+ + + L+ N V + + LQ + L N +
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-VALM 398
Query: 535 SFKLRILNISHNRLRSLPRDVFSN-----TIIEKLDISYNQ 570
+ + L L SL + I L++S N
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439
Score = 68.0 bits (166), Expect = 3e-12
Identities = 52/271 (19%), Positives = 103/271 (38%), Gaps = 18/271 (6%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
++ R K + LS N + + L EL + LS+N ++S+ F ++ + +S
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN-VFSNITSKQTPMNLNLSNNYITNLY 430
N+++ I + + +L LDL N + F N+T L LS L
Sbjct: 109 HNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF---LGLSAAKFRQLD 162
Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA-TAFGNLDV 489
+ LDL + I+ LQ ++ L N + + + L
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222
Query: 490 LELLSLEHNNIAVVVKRTFIG-------MPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
L+L +++ N+ TF+ + N+ + + + QF++ + LN
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282
Query: 543 ISHNRLRSLPRD---VFSNTIIEKLDISYNQ 570
I + + +S T ++ L I + +
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVK 313
Score = 60.3 bits (146), Expect = 8e-10
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P K+L LS N I E+ + + + LR L L N I+ LD F LE L + H
Sbjct: 51 PPRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLRSLPRDVF 556
N + + + M +L+ +DLSFN+ +L ++F KL L +S + R L
Sbjct: 110 NRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Query: 557 SNTIIEKLDISYNQDKIRPG 576
++ + + + I+ G
Sbjct: 167 AHLHLSCILLDLVSYHIKGG 186
Score = 50.6 bits (121), Expect = 1e-06
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 30/129 (23%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
+D SN + VP + + L L N I L L
Sbjct: 34 SMVDYSNRNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFL-------------- 75
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
L+++ LS N I L F F+ L L++SHNRL+++ ++ +
Sbjct: 76 ----------SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS--L 123
Query: 562 EKLDISYNQ 570
LD+S+N
Sbjct: 124 RHLDLSFND 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 121 bits (306), Expect = 1e-30
Identities = 59/256 (23%), Positives = 102/256 (39%), Gaps = 15/256 (5%)
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI-K 376
+ + + I SD N EL L+ I+ +F ++ I +S N + +
Sbjct: 12 RVFLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 377 YIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
I + F NLP L ++ ++ N L N F N+ + Q L +SN I +L + K
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY---LLISNTGIKHLPDVHKI 125
Query: 436 QAPIYIKSLDLS-NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
+ LD+ N I + N + L+L+ N I+ + +AF + EL
Sbjct: 126 HSLQ-KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184
Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
++NN+ + F G I+D+S I L KLR + L+ LP
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP-- 240
Query: 555 VFSN-TIIEKLDISYN 569
+ + ++Y
Sbjct: 241 TLEKLVALMEASLTYP 256
Score = 119 bits (300), Expect = 9e-30
Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 20/245 (8%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK-LQIIELNSNVFDVFEKLQLLE 244
L N L K+ + F +L+++ +S N L++IE ++VF KL +
Sbjct: 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIR 85
Query: 245 ISFSLFNSN---EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN-K 300
I +N +NL L++L + N IK++ + + ++++ N
Sbjct: 86 IE----KANNLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140
Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK 360
I I N F + + L+ N ++ I + F + N L+ + F
Sbjct: 141 IHTIERNSFV-GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199
Query: 361 NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN 420
+ + + +S +I + NL L + K L + + +
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALME---AS 252
Query: 421 LSNNY 425
L+
Sbjct: 253 LTYPS 257
Score = 74.5 bits (183), Expect = 1e-14
Identities = 49/305 (16%), Positives = 87/305 (28%), Gaps = 89/305 (29%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHL------GTTILKGDQLQGIFNSKLRELEIT-GK 54
L KL V+ S L+ + +++ D + KL E+ I
Sbjct: 34 ELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNL--PKLHEIRIEKAN 90
Query: 55 DLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
+L +I+P AF N+ L + +NT I+ LP LD+ N
Sbjct: 91 NLLYINPEAFQNLPNLQYLLI--SNTGIKHLPDVHKIHSLQKV--LLDIQDN-------- 138
Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
+ + L L L N I +++ + F
Sbjct: 139 ------INIHTIERNSF---VGLSFESVILWLNKNGIQEIHNSAFN-------------- 175
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
E L N + +L ++F L +S ++ + S
Sbjct: 176 -----------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP--SYGL 222
Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
+ +KL+ N+K + +L L +L
Sbjct: 223 ENLKKLRAR-----------------------------STYNLKKLP--TLEKLVALMEA 251
Query: 295 NLEYN 299
+L Y
Sbjct: 252 SLTYP 256
Score = 72.6 bits (178), Expect = 6e-14
Identities = 49/313 (15%), Positives = 93/313 (29%), Gaps = 84/313 (26%)
Query: 39 QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
+ + EL L+ I AF + + N +E + + +F + +
Sbjct: 26 SDLPRN-AIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLH- 82
Query: 99 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNL 158
+ + L ++ ++ L NL+ LL+ I L
Sbjct: 83 -EIRIEKAN--------------NLLYINPEAFQN----LPNLQYLLISNTGIKHLPDVH 123
Query: 159 FRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN-KITDLNGNLFRHL-YNLQE 216
H L ++ N I + N F L +
Sbjct: 124 KIH-------------------------SLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158
Query: 217 LSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNN 276
L L+ N +Q I F QL E++ DNNN
Sbjct: 159 LWLNKNGIQEIH-----NSAFNGTQLDELNL------------------------SDNNN 189
Query: 277 IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFY 336
++ + N + + +++ +I + + LK++R + Y L + T
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE-----NLKKLRARSTY-NLKKLPTLE 243
Query: 337 NLKELNTITLSYN 349
L L +L+Y
Sbjct: 244 KLVALMEASLTYP 256
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 119 bits (300), Expect = 1e-29
Identities = 78/364 (21%), Positives = 153/364 (42%), Gaps = 39/364 (10%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
L+ +L+ +TD+ L ++ +L ++ K+ I+ + L+ L ++
Sbjct: 21 LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQ----GIEYLTNLEYLNLN 74
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
N+ NL L L + N I +I +L NLT+L + L + IS I
Sbjct: 75 -----GNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP 127
Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
++ + L N+ L + N+ LN +T++ + +K + T NL ++
Sbjct: 128 ----LANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLY 180
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
++ L++NQI+ I + +L +L N++ D + +N+T + L + NN I
Sbjct: 181 SLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNS---LKIGNNKI 233
Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
T+L + L++ N+I ++ V L L+ L + N+I +
Sbjct: 234 TDLSPLANLSQ---LTWLEIGTNQISDINAVKDLT----KLKMLNVGSNQISDISV--LN 284
Query: 486 NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISH 545
NL L L L +N + G+ NL + LS N I+ + K+ + ++
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342
Query: 546 NRLR 549
++
Sbjct: 343 QVIK 346
Score = 109 bits (276), Expect = 1e-26
Identities = 67/359 (18%), Positives = 142/359 (39%), Gaps = 40/359 (11%)
Query: 214 LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMD 273
L+ + I +++ + + + + L ++ L +
Sbjct: 2 AATLATLPAPINQIFPDAD----LAEGIRAVL-----QKASVTDVVTQEELESITKLVVA 52
Query: 274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
+ +I+ + LT+L Y+NL N+I+ I + +L + + N + I +
Sbjct: 53 GEKVASIQG--IEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDISA- 105
Query: 334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
NL L + L+ + + I NL M ++ L N + N+ L L
Sbjct: 106 -LQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLT 161
Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE 453
+ ++K+KD + +N+T + L+L+ N I ++ + + N+I +
Sbjct: 162 VTESKVKD--VTPIANLTDLYS---LSLNYNQIEDISPLASLTS---LHYFTAYVNQITD 213
Query: 454 V-PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMP 512
+ PV + L L + N+I L NL L L + N I+ + +
Sbjct: 214 ITPVANMT----RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265
Query: 513 NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
L+++++ N+IS ++ +L L +++N+L + +V T + L +S N
Sbjct: 266 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322
Score = 106 bits (267), Expect = 3e-25
Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 44/384 (11%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMT-LDLSHNKLSVLNMATLYSNVTKLQHLGTTILK 132
TL I ++ ++ + L ++ + ++TKL + +
Sbjct: 4 TLATLPAPINQIFP-----DADLAEGIRAVLQKASVTDVVTQEELESITKL-VVAGEKVA 57
Query: 133 DREKL--LSNLETLLLRCNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN 189
+ + L+NLE L L N+ITD++ + L N+ + L+N
Sbjct: 58 SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNL------YIGTNKITDISALQNLTN 111
Query: 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
L L L + I+D++ +L + L+L N + S + + L L ++
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGAN--HNLSDLSPLSN-MTGLNYLTVT--- 163
Query: 250 FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF 309
++ NL L L+++ N I++I L +LTSL+Y N+I+ I
Sbjct: 164 --ESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--- 216
Query: 310 HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV 369
RL +++ NN + + NL +L + + N + I + K+L + +
Sbjct: 217 -VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLN 271
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
+ NQI I + NL L L L +N+L + ++ V +T+ T L LS N+IT++
Sbjct: 272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT---LFLSQNHITDI 326
Query: 430 YENDKKQAPIYIKSLDLSNNRIQE 453
+ S D +N I++
Sbjct: 327 RPLASLSK---MDSADFANQVIKK 347
Score = 86.8 bits (216), Expect = 9e-19
Identities = 75/379 (19%), Positives = 142/379 (37%), Gaps = 60/379 (15%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
+ L ++ + ++TKL G + ++ + + L L + G + I
Sbjct: 25 IRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYL--TNLEYLNLNGNQITDIS 82
Query: 61 PSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
P + LT L I +I ++ + + N+ L L+ + +S ++ +
Sbjct: 83 P-----LSNLVKLTNLYIGTNKITDISA--LQNLTNLR--ELYLNEDNISDISPLANLTK 133
Query: 120 VTKLQHLGTTILKDREKL--LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNE 177
+ L L D L ++ L L + +K+ D+
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI-------------------- 173
Query: 178 DQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVF 237
L++L +L L N+I D++ L +L + N++ I
Sbjct: 174 -------ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT----PVANM 220
Query: 238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE 297
+L L+I +N+ NL+ L WL + N I +I ++ +LT L +N+
Sbjct: 221 TRLNSLKIG-----NNKITDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVG 273
Query: 298 YNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTT 357
N+IS I N +L + L+NN L + + L L T+ LS N + I
Sbjct: 274 SNQISDISV----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--R 327
Query: 358 SFKNLNNMLNIVLSFNQIK 376
+L+ M + + IK
Sbjct: 328 PLASLSKMDSADFANQVIK 346
Score = 59.9 bits (146), Expect = 7e-10
Identities = 58/312 (18%), Positives = 127/312 (40%), Gaps = 44/312 (14%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN----SKLRELEITGKDLK 57
L+L+ N+++ + S ++ L L + +++ I + LREL + ++
Sbjct: 70 YLNLNGNQITDI------SPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS 123
Query: 58 FIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATL 116
I P + + L + S L + + L ++ +K+ +
Sbjct: 124 DISP-----LANLTKMYSLNLGANHNLSDLSPLS-NMTGLN--YLTVTESKVKDVTPIAN 175
Query: 117 YSNVTKLQHLGTTILKDREKL--LSNLETLLLRCNKITDLNGNLFRHLQK-SIVKAKKNN 173
+++ L L ++D L L++L N+ITD+ ++ + + +K N
Sbjct: 176 LTDLYSL-SLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232
Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
+ +++ LS L L + N+I+D+N + L L+ L++ N++ I V
Sbjct: 233 ITDLSPLAN----LSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS----V 282
Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILN--KNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
+ +L L ++ +N+ + L L L + N+I +IR L +L+ +
Sbjct: 283 LNNLSQLNSLFLN-----NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335
Query: 292 NYINLEYNKISK 303
+ + I K
Sbjct: 336 DSADFANQVIKK 347
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 117 bits (295), Expect = 3e-28
Identities = 102/457 (22%), Positives = 182/457 (39%), Gaps = 62/457 (13%)
Query: 143 TLLLRCNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKIT 201
+ + I + K+++ N D VS + L + TL I
Sbjct: 6 ATITQDTPINQIFTDTALAEKMKTVL----GKTNVTDTVSQTD--LDQVTTLQADRLGIK 59
Query: 202 DLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILN 261
++G +L NL +++ S N+L I KL + ++ N+
Sbjct: 60 SIDG--VEYLNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNN-----NQIADITPL 108
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN-----NLFHFNIH-- 314
NL L L + NN I +I L NLT+LN + L N IS I +L +
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 166
Query: 315 ----------KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
L+ + +S+N + I L L ++ + N + I T L N
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI--TPLGILTN 222
Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
+ + L+ NQ+K I +L NL LDL +N++ + L S +T L L N
Sbjct: 223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTE---LKLGAN 275
Query: 425 YITNLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDATA 483
I+N+ A + +L+L+ N+++++ P++ L+ +L L L FN I + +
Sbjct: 276 QISNISPLAGLTA---LTNLELNENQLEDISPISNLK----NLTYLTLYFNNISDI--SP 326
Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI 543
+L L+ L +N ++ V + + N+ + N+IS LT ++ L +
Sbjct: 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
Query: 544 SHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESN 580
+ + P + +N I + I P S+
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISD 419
Score = 116 bits (292), Expect = 6e-28
Identities = 102/493 (20%), Positives = 183/493 (37%), Gaps = 76/493 (15%)
Query: 90 FDKIENIEQMT----LDLSHNKLSVLNMATLYSNVTKL--QHLGTTILKDREKLLSNLET 143
++I + L ++ T VT L LG + E L +NL
Sbjct: 14 INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-NNLTQ 72
Query: 144 LLLRCNKITDLNGNLFRHLQK-SIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD 202
+ N++TD+ ++L K + N + +++ L+NL L L N+ITD
Sbjct: 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLAN----LTNLTGLTLFNNQITD 126
Query: 203 LNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNK 262
++ ++L NL L LS N + I LQ L + +
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFGNQVTDLKPL------A 174
Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
NL TLE L + +N + +I L LT+L + N+IS I I L E+ L
Sbjct: 175 NLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP----LGILTNLDELSL 228
Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNA 382
+ N L+ I + +L L + L+ N + ++ L + + L NQI I +
Sbjct: 229 NGNQLKDIGT--LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNI--SP 282
Query: 383 FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK 442
L L L+L +N+L+D ++ SN+ + L L N I+++
Sbjct: 283 LAGLTALTNLELNENQLED--ISPISNLKNLTY---LTLYFNNISDI------------- 324
Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502
PV+ L L++L+ N++ + + NL + LS HN I+
Sbjct: 325 -----------SPVSSLT----KLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367
Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIE 562
+ + + + L+ + + + + P +
Sbjct: 368 L--TPLANLTRITQLGLNDQAWTNAPVNYKA-NVSIPNTVKNVTGALIAPATISDGGSYT 424
Query: 563 KLDISYNQDKIRP 575
+ DI++N
Sbjct: 425 EPDITWNLPSYTN 437
Score = 95.4 bits (238), Expect = 4e-21
Identities = 91/459 (19%), Positives = 175/459 (38%), Gaps = 52/459 (11%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-SKLRELEITGKDLKFI 59
M L ++ +++ ++ L L + G+ + L ++ + L I
Sbjct: 27 MKTVLGKTNVTDT---VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 83
Query: 60 DPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
P + L + + N QI ++ + N+ L L +N+++ ++ +
Sbjct: 84 TP-----LKNLTKLVDILMNNNQIADITP--LANLTNLT--GLTLFNNQITDIDPLKNLT 134
Query: 119 NVTKLQHLGTTILKDREKL--LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNN 176
N+ +L L + + D L L++L+ L L++ + ++N
Sbjct: 135 NLNRL-ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI-----SSNK 188
Query: 177 EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDV 236
+S KL +NLE+L+ N+I+D+ L NL ELSL+ N+L+ I
Sbjct: 189 VSDISVLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLAS 241
Query: 237 FEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL 296
L L+++ +N+ L L L + N I NI L LT+L + L
Sbjct: 242 LTNLTDLDLA-----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294
Query: 297 EYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT 356
N++ I + K L + L N + I +L +L + N + +
Sbjct: 295 NENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346
Query: 357 TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
+S NL N+ + NQI + P NL + +L L D + +N +N++ T
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404
Query: 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
N+ + + + D++ N
Sbjct: 405 KNVTGALIAPATISDGGS------YTEPDITWNLPSYTN 437
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 116 bits (292), Expect = 2e-27
Identities = 80/416 (19%), Positives = 151/416 (36%), Gaps = 45/416 (10%)
Query: 187 LSNLETLLLRCNKITDL--NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLE 244
++L +L L N ++ L+ L++S N L S L++L+
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLD 157
Query: 245 ISFSLFNSNEFPYYILNKNLNTLEWLAMDNN---------NIKNIR------NY------ 283
+S + + ++L+ L+ LA+ N N+ N
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217
Query: 284 SLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLE-LIESDTFYNLKEL 341
L + ++L ++++ NK+S + LK + +S+N I +L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTC---TELKLLNISSNQFVGPIPPLPLKSLQYL 274
Query: 342 NTITLSYNLLK-SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK 400
+ L+ N I + + + LS N P F + L L L N
Sbjct: 275 S---LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 401 D-FNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNF 458
++ + + L+LS N + + +LDLS+N + N
Sbjct: 332 GELPMDTLLKMRGLK---VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 459 LQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIID 518
Q ++L++LYL N N L L L N ++ + + + L+ +
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 519 LSFNEISMLTGE---QFYFSFKLRILNISHNRLR-SLPRDVFSNTIIEKLDISYNQ 570
L N ML GE + + L L + N L +P + + T + + +S N+
Sbjct: 449 LWLN---MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Score = 111 bits (281), Expect = 6e-26
Identities = 119/605 (19%), Positives = 209/605 (34%), Gaps = 104/605 (17%)
Query: 2 TLDLSHNKLS--VLNMATLYSNVTKLQHLGTTILKGDQLQG---IFN-SKLRELEITGKD 55
LDLS N +S + L +L+HL + G+++ G + L L+++ +
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRCVNLEFLDVSSNN 211
Query: 56 LKFIDPSAFDNIDACYDLT-LKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNM 113
P + C L L I+ ++ + + ++ L++S N+
Sbjct: 212 FSTGIPF----LGDCSALQHLDISGNKLSGDFSRAIS-TCTELK--LLNISSNQFV---- 260
Query: 114 ATL-YSNVTKLQHLGT-------TILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKS 165
+ + LQ+L I L L L N G +
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH---FYGAVPPFFGS- 316
Query: 166 IVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD-LNGNLFRHLYNLQELSLSFNKL 224
S LE+L L N + L + + L+ L LSFN+
Sbjct: 317 ---------------------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYS 284
EL ++ ++ L L++S + F S + NTL+ L + NN +
Sbjct: 356 SG-ELPESLTNLSASLLTLDLSSNNF-SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 285 LYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
L N + L ++L +N +S I ++L +L++++L N LE +K L T
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSL---SKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
+ L +N L + N N+ I LS N++ P L NL L L +N
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 404 LNVFSNITSKQTPMNLNLSNNYIT--------NLYENDKKQAPIYIKSLDLSNNRI-QEV 454
+ S L+L+ N S ++ N I +
Sbjct: 531 PAELGDCRSLIW---LDLNTNLFNGTIPAAMFKQ-------------SGKIAANFIAGKR 574
Query: 455 PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL 514
V + E + + + L ++ TF ++
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 515 QIIDLSFN--------EISMLTGEQFYFSFKLRILNISHNRLR-SLPRDVFSNTIIEKLD 565
+D+S+N EI + L ILN+ HN + S+P +V + LD
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPY--------LFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 566 ISYNQ 570
+S N+
Sbjct: 687 LSSNK 691
Score = 97.3 bits (243), Expect = 3e-21
Identities = 70/397 (17%), Positives = 136/397 (34%), Gaps = 55/397 (13%)
Query: 188 SNLETLLLRCNKITDLNGNL---FRHLYNLQELSLSFNKL--QIIELNSNVFDVFEKLQL 242
+ ++ L + + L L+ L LS + + + L
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKC-----SASLTS 104
Query: 243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI-KNIRNYSLYNLTSLNYINLEYNKI 301
L++S + S + + L++L + +N + + L SL ++L N I
Sbjct: 105 LDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 302 S-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK-SIKTTSF 359
S + LK + +S N + L + +S N I
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGI--PFL 219
Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL 419
+ + + ++ +S N++ + A L L++ N+
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF------------------VG 261
Query: 420 NLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFLQTFADSLRKLYLDFNEIKH 478
+ + +L + L L+ N+ E+P +L L L N
Sbjct: 262 PIPPLPLKSL------------QYLSLAENKFTGEIPDFLSGACD-TLTGLDLSGNHFYG 308
Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIG-MPNLQIIDLSFNEIS-MLTGEQFYFSF 536
FG+ +LE L+L NN + + + M L+++DLSFNE S L S
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 537 KLRILNISHNRLR-SLPRDVFSNTI--IEKLDISYNQ 570
L L++S N + ++ N +++L + N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Score = 96.5 bits (241), Expect = 5e-21
Identities = 115/602 (19%), Positives = 210/602 (34%), Gaps = 119/602 (19%)
Query: 2 TLDLSHNKLS-VLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-------SKLRELEITG 53
+LDLS N LS + T + + L+ L + + L + L L+++
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLN---VSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 54 KDLKFIDPSAFDNIDACYDLT-LKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVL 111
+ + + D C +L L I+ +I ++ +E LD+S N S
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE-----FLDVSSNNFS-- 213
Query: 112 NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKK 171
T + LG S L+ L + NK L+G+ R +
Sbjct: 214 ---------TGIPFLGD---------CSALQHLDISGNK---LSGDFSRAIST------- 245
Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNL-FRHLYNLQELSLSFNKLQIIELN 230
+ L+ L + N+ G + L +LQ LSL+ NK E+
Sbjct: 246 ---------------CTELKLLNISSNQ---FVGPIPPLPLKSLQYLSLAENKFT-GEIP 286
Query: 231 SNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-NIRNYSLYNLT 289
+ + L L++S + F P + + + LE LA+ +NN + +L +
Sbjct: 287 DFLSGACDTLTGLDLSGNHF-YGAVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 290 SLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYL--ELIESDTFYNLKELNTITL 346
L ++L +N+ S ++ +L N+ L + LS+N ++ + L + L
Sbjct: 344 GLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
N + N + ++++ LSFN + P++ +L L L L N L+
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 407 FSNITSKQTPMNLNLSNNYIT--------NLYENDKKQAPIYIKSLDLSNNRIQ-EVPVN 457
+ + +T L L N +T N + + LSNNR+ E+P
Sbjct: 462 LMYVKTLET---LILDFNDLTGEIPSGLSNC---------TNLNWISLSNNRLTGEIPKW 509
Query: 458 F--LQTFADSLRKLYLDFN----EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM 511
L+ +L L L N I G+ L L L N +
Sbjct: 510 IGRLE----NLAILKLSNNSFSGNIPA----ELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 512 PNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR---SLPRDVFSNTIIEKLDISY 568
++ N I+ + + + N L + + +I+
Sbjct: 562 SG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 569 NQ 570
Sbjct: 618 RV 619
Score = 76.9 bits (190), Expect = 7e-15
Identities = 100/541 (18%), Positives = 176/541 (32%), Gaps = 113/541 (20%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
L L+ NK + L L L L G+ G L+ +
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLD---LSGNHFYGAVPPFFGSC----SLLESLA- 324
Query: 62 SAFDNIDACYDLTLKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
+++ ELP K+ ++ LDLS N+ S
Sbjct: 325 ---------------LSSNNFSGELPMDTLLKMRGLK--VLDLSFNEFS----------- 356
Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKIT-DLNGNLFRHLQKSIVKAKKNNNNNEDQ 179
G + + L ++L TL L N + + NL ++ + ++ + NN +
Sbjct: 357 ------GE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNL---FRHLYNLQELSLSFNKLQIIELNSNVFDV 236
+ S L +L L N L+G + L L++L L N L+ E+ +
Sbjct: 410 IPPTLSNCSELVSLHLSFNY---LSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMY- 464
Query: 237 FEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-NIRNYSLYNLTSLNYIN 295
+ L+ L + F+ + E P + N L W+++ NN + I + L +L +
Sbjct: 465 VKTLETLILDFNDL-TGEIPSGL--SNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILK 520
Query: 296 LEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLE-LIESDTFYNLKELNTITLSYNLLKS 353
L N S I L + L + L+ N I + F ++ ++
Sbjct: 521 LSNNSFSGNIPAELGDC---RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
IK + + + + I L ++ F N S
Sbjct: 578 IKNDGM---KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS- 633
Query: 414 QTPMNLNLSNNY--------ITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFLQTFAD 464
M L++S N I ++ Y+ L+L +N I +P
Sbjct: 634 --MMFLDMSYNMLSGYIPKEIGSM---------PYLFILNLGHNDISGSIPDEV------ 676
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
G+L L +L L N + + + + L IDLS N +
Sbjct: 677 --------------------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 525 S 525
S
Sbjct: 717 S 717
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 107 bits (269), Expect = 1e-25
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 2/165 (1%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
+ ++L +N +S++ L + LS+N+L I S+ F + L + LS
Sbjct: 39 SYTALLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N L ++ F +L + ++L N I + NAF ++ L KL L N++ F + +
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 409 NITSKQTPMNLNLSNNYITNLYENDKKQAP-IYIKSLDLSNNRIQ 452
+ M L+LS+N + L D ++ P L L NN ++
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
Score = 101 bits (252), Expect = 2e-23
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 32/192 (16%)
Query: 312 NIHKRLKEIRLSNNYLELIESDT-FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
++ + LS+N L + ++ L L+++ LS+N L I + +F + N+ + L
Sbjct: 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95
Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
S N + + F +L L L L +N + + N F ++
Sbjct: 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ------------------ 137
Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLD 488
++ L LS N+I PV ++ L L L N++K L T L
Sbjct: 138 ----------LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Query: 489 VLELLSLE-HNN 499
L HNN
Sbjct: 188 AWVKNGLYLHNN 199
Score = 99.1 bits (247), Expect = 8e-23
Identities = 49/212 (23%), Positives = 78/212 (36%), Gaps = 40/212 (18%)
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFNQIK 376
+ S L + L+ LS+N L ++ + L N+ +++LS N +
Sbjct: 21 NILSCSKQQLPNVPQSLPSYTALLD---LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
+I AFV +PNL LDL N L + +FS++ +
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA------------------------ 113
Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDV---LE 491
++ L L NN I V N F D L+KLYL N+I + + L
Sbjct: 114 ----LEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166
Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE 523
LL L N + + +P L +
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
Score = 96.1 bits (239), Expect = 1e-21
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P Y LDLS+N + + + T +L L L N + + + AF + L L L
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N++ + + F + L+++ L N I ++ F +L+ L +S N++ P ++
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 558 N----TIIEKLDISYNQ 570
+ + LD+S N+
Sbjct: 158 DGNKLPKLMLLDLSSNK 174
Score = 93.4 bits (232), Expect = 8e-21
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451
L +L + ++ S L+LS+N ++ L + SL LS+N +
Sbjct: 23 LSCSKQQLPNVPQSLPSYTA------LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76
Query: 452 QEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFI 509
+ F +LR L L N + LD F +L LE+L L +N+I VV + F
Sbjct: 77 NFISSE---AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133
Query: 510 GMPNLQIIDLSFNEISMLTGEQFYFSFK---LRILNISHNRLRSLPRDVFSN 558
M LQ + LS N+IS E K L +L++S N+L+ LP
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
Score = 93.4 bits (232), Expect = 9e-21
Identities = 42/210 (20%), Positives = 68/210 (32%), Gaps = 54/210 (25%)
Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
S L L N ++ L L+NL +LLL N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTR------------------------LTNLHSLLLSHN 74
Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY 258
+ ++ F + NL+ L LS N L L+ +F
Sbjct: 75 HLNFISSEAFVPVPNLRYLDLSSNHLH--TLDEFLFS----------------------- 109
Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH-KRL 317
+L LE L + NN+I + + ++ L + L N+IS+ L +L
Sbjct: 110 ----DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLS 347
+ LS+N L+ + L L
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 66.8 bits (163), Expect = 4e-12
Identities = 47/239 (19%), Positives = 83/239 (34%), Gaps = 36/239 (15%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
LDLSHN LS L + +T L L +L + L F LR L+++
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSL---LLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 56 LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
L +D F ++ A L L + N I + F+ + ++ L LS N++S +
Sbjct: 100 LHTLDEFLFSDLQA---LEVLLLYNNHIVVVDRNAFEDMAQLQ--KLYLSQNQISRFPVE 154
Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
+ L L L L NK+ L + L + +N
Sbjct: 155 LI----------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
Query: 175 NN-----EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228
N + L +++ + ++ ++++L + S K E
Sbjct: 199 NPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWE 257
Score = 64.5 bits (157), Expect = 3e-11
Identities = 36/178 (20%), Positives = 56/178 (31%), Gaps = 51/178 (28%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
+L +++ + + S F + N+ LDLS N L L+
Sbjct: 68 SLLLSHNHLNFISSEAFVPVPNLR--YLDLSSNHLHTLDEFLFSD--------------- 110
Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL 193
L LE LLL N I ++ N F ++ L+ L
Sbjct: 111 ----LQALEVLLLYNNHIVVVDRNAFED-------------------------MAQLQKL 141
Query: 194 LLRCNKITDLNGNLFR---HLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
L N+I+ L + L L L LS NKL+ +L +
Sbjct: 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK--KLPLTDLQKLPAWVKNGLYLH 197
Score = 39.1 bits (91), Expect = 0.003
Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 27/109 (24%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN--SKLRELEITGKDLKF 58
L L +N + V++ + F ++L++L ++ +
Sbjct: 115 EVLLLYNNHIVVVD------------------------RNAFEDMAQLQKLYLSQNQISR 150
Query: 59 IDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106
+ + L L +++ ++++LP K+ + L L +N
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 103 bits (260), Expect = 2e-25
Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 9/213 (4%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNL-LKSIKTTSFKNLNNMLNIVL 370
++ + ++L +L I S F NL ++ I +S ++ L+ +++ SF NL+ + +I +
Sbjct: 28 SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87
Query: 371 SFNQ-IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
+ + YI P+A LP L L + + LK F T + + N Y+T++
Sbjct: 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI-TDNPYMTSI 146
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS-LRKLYLDFN-EIKHLDATAFGNL 487
N + +L L NN V F + L +YL+ N + +D AFG +
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTSVQGY---AFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203
Query: 488 -DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
LL + ++ + + + L +
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 97.8 bits (244), Expect = 4e-23
Identities = 39/243 (16%), Positives = 84/243 (34%), Gaps = 37/243 (15%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L + +TL L + + + F +L N+ + +S + + + +L S+ F K+ +EI
Sbjct: 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEI 87
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
+ N+ I +L L L ++ + +
Sbjct: 88 R--------------------------NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL-KELNTITLSYNLLKSIKTTSFKNLNN 364
+ ++ N Y+ I + F L E T+ L N S++ +F
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-K 180
Query: 365 MLNIVLSFNQ-IKYIYPNAFVNLPN-LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
+ + L+ N+ + I +AF + + LD+ + ++ L
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK------ELIAR 234
Query: 423 NNY 425
N +
Sbjct: 235 NTW 237
Score = 90.8 bits (226), Expect = 8e-21
Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 35/225 (15%)
Query: 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN-QIKYIYPNAFVNLPNLVKLDLQDNK 398
T+ L L++I + +F NL N+ I +S + ++ + ++F NL + +++++ +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 399 -LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN 457
L + + + +K L + N ++ P
Sbjct: 92 NLTYIDPDALKELPL----------------------------LKFLGIFNTGLKMFPDL 123
Query: 458 FLQTFADSLRKLYL-DFNEIKHLDATAFGNL-DVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
D L + D + + AF L + L L +N V F G L
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD 182
Query: 516 IIDLSFN-EISMLTGEQFY-FSFKLRILNISHNRLRSLPRDVFSN 558
+ L+ N ++++ + F +L++S + +LP +
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227
Score = 85.8 bits (213), Expect = 5e-19
Identities = 34/263 (12%), Positives = 87/263 (33%), Gaps = 60/263 (22%)
Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
L + +TL L + + + F + L N+ + +
Sbjct: 29 LPPSTQTLKLIETHLRTIPSHAFSN-------------------------LPNISRIYVS 63
Query: 197 CN-KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEF 255
+ + L + F +L + + + + + ++ +
Sbjct: 64 IDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALK-------------------- 102
Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIRNYS-LYNLTSLNYINLEYN-KISKIHNNLFHFNI 313
L L++L + N +K + + +Y+ + + N ++ I N F +
Sbjct: 103 -------ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ-GL 154
Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIV-LS 371
++L NN ++ F K L+ + L+ N L I +F + + +++ +S
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213
Query: 372 FNQIKYIYPNAFVNLPNLVKLDL 394
+ + +L L+ +
Sbjct: 214 QTSVTALPSKGLEHLKELIARNT 236
Score = 59.2 bits (144), Expect = 4e-10
Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 36/228 (15%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
TL L L + SN+ + + + + L++ ++
Sbjct: 35 TLKLIETHLRTIPSHAF-SNLPNISRI--------YVSI--DVTLQQ----------LES 73
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
+F N+ + ++ + + ++ ++ L + + L + T +
Sbjct: 74 HSFYNLSKVTHIEIR-NTRNLTYIDPDALKELPLLK--FLGIFNTGLKMFPDLTKVYSTD 130
Query: 122 KLQHLGT------TILKDR--EKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
L T + + L + TL L N T + G F + + N
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK--LDAVYLNK 188
Query: 174 NNNEDQVSDR--EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
N + + S L + +T L HL L +
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 58.9 bits (143), Expect = 7e-10
Identities = 34/253 (13%), Positives = 78/253 (30%), Gaps = 51/253 (20%)
Query: 46 LRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH 105
+ L++ L+ I AF N+ + + + +++L S F + + +++ +
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVT--HIEIRN 89
Query: 106 NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKS 165
+ L ++ LK+ L L+ L + + +
Sbjct: 90 TR--------------NLTYIDPDALKE----LPLLKFLGIFNTGLKMFPDLTKVYSTDI 131
Query: 166 IVKAKKNNNNNEDQVSDR--EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK 223
+ +N + + L + TL L N T + G F L + L+ NK
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNK 190
Query: 224 LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
+ ++ + F + L + ++ + +
Sbjct: 191 -YLTVIDKDAFG--------------------------GVYSGPSLLDVSQTSVTALPSK 223
Query: 284 SLYNLTSLNYINL 296
L +L L N
Sbjct: 224 GLEHLKELIARNT 236
Score = 36.5 bits (85), Expect = 0.014
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 512 PNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN-RLRSLPRDVFSN-TIIEKLDISYN 569
P+ Q + L + + F + + +S + L+ L F N + + ++I
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 570 Q 570
+
Sbjct: 91 R 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 101 bits (253), Expect = 4e-24
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 35/212 (16%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
++L+ NK+S + + FH L+ + L++N L+ + + F LK L T+ ++
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTK--LRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N L+++ F L N+ + L NQ+K + P F +L L L L N+L+ VF
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SL 466
+TS +K L L NN+++ VP F L
Sbjct: 155 KLTS----------------------------LKELRLYNNQLKRVPEG---AFDKLTEL 183
Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
+ L LD N++K + AF +L+ L++L L+ N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 100 bits (251), Expect = 7e-24
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 31/210 (14%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
++ + L L+ NK++ L F L L+ L L+ NKLQ + + +F
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP--AGIFK------------ 82
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
L LE L + +N ++ + L +L + L+ N++ +
Sbjct: 83 ---------------ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
+F ++ K L + L N L+ + F L L + L N LK + +F L +
Sbjct: 128 VFD-SLTK-LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
+ L NQ+K + AF +L L L LQ+N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 97.7 bits (244), Expect = 6e-23
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 33/213 (15%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
NI K++ L +N L + S F+ L +L + L+ N L+++ FK L N+ + ++
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
N+++ + F L NL +L L N+LK VF ++T
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY---------------- 137
Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDV 489
L L N +Q +P F SL++L L N++K + AF L
Sbjct: 138 ------------LSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L+ L L++N + V + F + L+++ L N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 91.6 bits (228), Expect = 7e-21
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 33/191 (17%)
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
L N++ + AF L L L L DNKL+ +F + + +T
Sbjct: 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET-------------- 89
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNL 487
L +++N++Q +P+ F +L +L LD N++K L F +L
Sbjct: 90 --------------LWVTDNKLQALPIG---VFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR 547
L LSL +N + + K F + +L+ + L N++ + F +L+ L + +N+
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 548 LRSLPRDVFSN 558
L+ +P F +
Sbjct: 193 LKRVPEGAFDS 203
Score = 76.9 bits (190), Expect = 7e-16
Identities = 49/231 (21%), Positives = 82/231 (35%), Gaps = 63/231 (27%)
Query: 75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG------T 128
L + + ++ LPS F ++ + L L+ NKL L A ++ + L+ L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLR--LLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQ 98
Query: 129 TILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLS 188
+ L NL L L N++ L +F L +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-------------------------T 133
Query: 189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
L L L N++ L +F L +L+EL L N+L+ + FD
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP--EGAFD------------- 178
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L L+ L +DNN +K + + +L L + L+ N
Sbjct: 179 --------------KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 72.7 bits (179), Expect = 2e-14
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
S+D S+ ++ +P N AD +KL L N++ L + AF L L LL L N +
Sbjct: 19 NSVDCSSKKLTAIPSNI---PAD-TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TI 560
+ F + NL+ + ++ N++ L F L L + N+L+SLP VF + T
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 561 IEKLDISYNQ 570
+ L + YN+
Sbjct: 135 LTYLSLGYNE 144
Score = 65.8 bits (161), Expect = 4e-12
Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 58/226 (25%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
LDL NKLS L + + +TKL+ L L ++LQ GIF L L +T L
Sbjct: 42 LDLQSNKLSSLP-SKAFHRLTKLRLLY---LNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATL 116
+ + FD + +L L Q++ LP +FD + + L L +N+L L
Sbjct: 98 QALPIGVFDQLVNLAELRL--DRNQLKSLPPRVFDSLTKLT--YLSLGYNELQSLPKGVF 153
Query: 117 YSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNN 176
L++L+ L L N++ + F
Sbjct: 154 DK-------------------LTSLKELRLYNNQLKRVPEGAFDK--------------- 179
Query: 177 EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFN 222
L+ L+TL L N++ + F L L+ L L N
Sbjct: 180 ----------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 29.2 bits (66), Expect = 3.5
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
L L +N+L L ++ +T L+ L L +QL+ G F+ ++L+ L++
Sbjct: 137 YLSLGYNELQSLP-KGVFDKLTSLKELR---LYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 56 LKFIDPSAFDNIDACYDLTL 75
LK + AFD+++ L L
Sbjct: 193 LKRVPEGAFDSLEKLKMLQL 212
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 101 bits (255), Expect = 3e-23
Identities = 84/430 (19%), Positives = 157/430 (36%), Gaps = 73/430 (16%)
Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQ-----------KSIVKAKKNNNNNEDQVSD 182
R + L+ L + +T++ +
Sbjct: 6 RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65
Query: 183 REKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQL 242
R+ L L L ++ L +L+ L S N L + ++ + L+
Sbjct: 66 RDCLDRQAHELELNNLGLSSLPELPP----HLESLVASCNSLTELP------ELPQSLKS 115
Query: 243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302
L + + + L+ LE+L + NN ++ + L N + L I+++ N +
Sbjct: 116 LLVDNNNLKA-------LSDLPPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLK 166
Query: 303 KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
K+ + L+ I NN LE + NL L I N LK +
Sbjct: 167 KLPDLPPS------LEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLP 214
Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
++ +IV N ++ + NLP L + +N LK ++ ++ + LN+
Sbjct: 215 LSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKTLP-DLPPSLEA------LNVR 265
Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
+NY+T+L + P + LD+S N + L +L L NEI+ L
Sbjct: 266 DNYLTDL-----PELPQSLTFLDVSENIF-----SGLSELPPNLYYLNASSNEIRSL--- 312
Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
LE L++ +N + + P L+ + SFN ++ + L+ L+
Sbjct: 313 -CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLH 363
Query: 543 ISHNRLRSLP 552
+ +N LR P
Sbjct: 364 VEYNPLREFP 373
Score = 97.4 bits (243), Expect = 9e-22
Identities = 75/397 (18%), Positives = 142/397 (35%), Gaps = 63/397 (15%)
Query: 183 REKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKL---------QIIELNSNV 233
R + L+ L + +T++ ++ + E ++++ + E+ +
Sbjct: 6 RNVSNTFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64
Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNY 293
Q E+ + + P + LE L N++ + +L SL
Sbjct: 65 LRDCLDRQAHELELNNLGLSSLP-----ELPPHLESLVASCNSLTELPE-LPQSLKSLLV 118
Query: 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS 353
N +S + L + + +SNN LE + N L I + N LK
Sbjct: 119 DNNNLKALSDLPPLL---------EYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKK 167
Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
+ ++ I NQ++ + NLP L + +N LK S
Sbjct: 168 L----PDLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLPLSL 217
Query: 414 QTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF 473
++ + NN + L E ++ ++ NN ++ +P SL L +
Sbjct: 218 ES---IVAGNNILEELPELQN---LPFLTTIYADNNLLKTLP-----DLPPSLEALNVRD 266
Query: 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFY 533
N + L +L L++ + ++ + PNL ++ S NEI L
Sbjct: 267 NYLTDLPE-LPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIRSLCDL--- 315
Query: 534 FSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
L LN+S+N+L LP +E+L S+N
Sbjct: 316 -PPSLEELNVSNNKLIELPALPPR---LERLIASFNH 348
Score = 94.3 bits (235), Expect = 1e-20
Identities = 89/524 (16%), Positives = 181/524 (34%), Gaps = 88/524 (16%)
Query: 58 FIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
FI+P N+ + ++ + E+P + E + ++
Sbjct: 2 FINPR---NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTE---YYNAWSEWERNAPPGN- 54
Query: 118 SNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNE 177
+ + + R+ L L L ++ L HL+ + + N+
Sbjct: 55 -----GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP-HLESLVA-----SCNSL 103
Query: 178 DQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVF 237
++ + + L +L ++DL L+ L +S N+L+ + N
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPELQN----S 152
Query: 238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE 297
L+++++ + L +LE++A NN ++ + L NL L I +
Sbjct: 153 SFLKIIDVDNNSLKK-------LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYAD 203
Query: 298 YNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTT 357
N + K+ + L+ I NN LE + NL L TI NLLK++
Sbjct: 204 NNSLKKLPDLPLS------LESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLP-- 253
Query: 358 SFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM 417
++ + + N + + P +L L + + L + N++
Sbjct: 254 --DLPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLSELPPNLYY--------- 301
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
LN S+N I +L + P ++ L++SNN++ E+P L +L FN +
Sbjct: 302 -LNASSNEIRSLCDL-----PPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLA 350
Query: 478 HLDATAFGNLDVL------------ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
+ NL L S+E + + NL+ + + N +
Sbjct: 351 EVPEL-PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409
Query: 526 MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
+ L ++ R+ T + D+ +
Sbjct: 410 EFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Score = 86.6 bits (215), Expect = 3e-18
Identities = 77/444 (17%), Positives = 154/444 (34%), Gaps = 83/444 (18%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
L++ N + LP + ++E +L S N L+ L L+ L
Sbjct: 75 ELELNNLGLSSLP----ELPPHLE--SLVASCNSLT-----ELPELPQSLKSLLVDNNNL 123
Query: 134 RE--KLLSNLETLLLRCNKIT--------------DLNGNLFRHLQKSIVKAKK-NNNNN 176
+ L LE L + N++ D++ N + L + NN
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 183
Query: 177 EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDV 236
+ + + L L + N + L +L+ + N L+ +
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEEL----PELQN 235
Query: 237 FEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL 296
L + +L + L +LE L + +N + ++ +LT L+
Sbjct: 236 LPFLTTIYADNNLLKT-------LPDLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVSEN 287
Query: 297 EYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT 356
++ +S++ NL + S+N + + D +L+ELN +S N L +
Sbjct: 288 IFSGLSELPPNL---------YYLNASSNEIRSL-CDLPPSLEELN---VSNNKLIEL-- 332
Query: 357 TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
+ ++ SFN + + NL +L ++ N L++F ++ ++ +
Sbjct: 333 --PALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFP-DIPESVEDLRMN 385
Query: 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI 476
+L NL K L + N ++E P +S+ L ++ +
Sbjct: 386 SHLAEVPELPQNL------------KQLHVETNPLREFPDIP-----ESVEDLRMNSERV 428
Query: 477 KHLDATAFGNLDVLELLSLEHNNI 500
A D LE EH++
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHHH 452
Score = 44.2 bits (105), Expect = 9e-05
Identities = 54/316 (17%), Positives = 107/316 (33%), Gaps = 54/316 (17%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNS--KLRELEITGKDLKFI 59
+ +N+L L + L L + L+ + + L + L
Sbjct: 177 FIAAGNNQLEEL------PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL--- 227
Query: 60 DPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
+ LT + N ++ LP D ++E L++ N L+ L L
Sbjct: 228 --EELPELQNLPFLTTIYADNNLLKTLP----DLPPSLE--ALNVRDNYLTDLP--ELPQ 277
Query: 119 NVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED 178
++T L + I +L NL L N+I L S+ + +NN
Sbjct: 278 SLTFL-DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP-----PSLEELNVSNN---- 327
Query: 179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFE 238
++ + L LE L+ N + ++ NL++L + +N L+ D+ E
Sbjct: 328 KLIELPALPPRLERLIASFNHLAEVPELPQ----NLKQLHVEYNPLREFP------DIPE 377
Query: 239 KLQLLEISFSLFNSNEFPY------------YILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
++ L ++ L E P ++E L M++ + + ++
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHE 437
Query: 287 NLTSLNYINLEYNKIS 302
L E++
Sbjct: 438 TTDKLEDDVFEHHHHH 453
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 99.0 bits (247), Expect = 3e-22
Identities = 64/399 (16%), Positives = 130/399 (32%), Gaps = 53/399 (13%)
Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
E+L + L +L + ITD+ G L L +L + N + ++L+
Sbjct: 27 AFEMQATDTISEEQL-ATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQ 83
Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
N L L + + + L L +L D N + + + L
Sbjct: 84 NT-----NLTYLACDSNKLTNLDV------TPLTKLTYLNCDTNKLTKL---DVSQNPLL 129
Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351
Y+N N +++I + +L E+ N + I +L T+ S+N +
Sbjct: 130 TYLNCARNTLTEIDVSHN-----TQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKI 182
Query: 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
+ + + N I + L LD NKL + ++ + +T
Sbjct: 183 TEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLT 236
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
+ S N +T L + + + +L + E+ + + +Y
Sbjct: 237 Y------FDCSVNPLTELDVSTLSK----LTTLHCIQTDLLEIDLTHN------TQLIYF 280
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
+ + + L LL + I + P L + L+ E++ L
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVSH 337
Query: 532 FYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
KL+ L+ + ++ V + + Q
Sbjct: 338 NT---KLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQ 372
Score = 85.5 bits (212), Expect = 8e-18
Identities = 73/397 (18%), Positives = 124/397 (31%), Gaps = 49/397 (12%)
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
+LD ++ ++ + + +TKL I +NL L NK+T+L+
Sbjct: 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPL 105
Query: 160 RHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
L N + VS L L N +T+++ H L EL
Sbjct: 106 TKLTYLNCD---TNKLTKLDVSQ----NPLLTYLNCARNTLTEID---VSHNTQLTELDC 155
Query: 220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279
NK + +L L+ SF+ + L L D NNI
Sbjct: 156 HLNKK----ITKLDVTPQTQLTTLDCSFNKITELDV------SQNKLLNRLNCDTNNITK 205
Query: 280 IRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLK 339
+ L L +++ NK+++I +L S N L ++ T L
Sbjct: 206 L---DLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257
Query: 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
L+ L I T L + I + L LD Q +
Sbjct: 258 TLH---CIQTDLLEIDLTHNTQLIY-----FQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309
Query: 400 KDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL 459
+ +L+ + L L+N +T L +KSL N IQ+
Sbjct: 310 TELDLSQNPKLV------YLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQDFSSV-- 357
Query: 460 QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
+L + + + N + +S +
Sbjct: 358 -GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393
Score = 78.6 bits (194), Expect = 1e-15
Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 40/319 (12%)
Query: 252 SNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHF 311
+ F + + N + A + I L LTSL + + I+ +
Sbjct: 8 TQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSL---DCHNSSITDMTG----I 60
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
L ++ ++N + ++ L + N L ++ L + +
Sbjct: 61 EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCD 114
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
N++ + + P L L+ N L + +++ + +T L+ N +
Sbjct: 115 TNKLTKLDVS---QNPLLTYLNCARNTLTEIDVSHNTQLTE------LDCHLNKKITKLD 165
Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE 491
+ + +LD S N+I E+ V+ + L +L D N I LD L
Sbjct: 166 VTPQTQ---LTTLDCSFNKITELDVSQNK----LLNRLNCDTNNITKLD---LNQNIQLT 215
Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
L N + + + L D S N ++ L KL L+ L +
Sbjct: 216 FLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEI 269
Query: 552 PRDVFSNTIIEKLDISYNQ 570
D+ NT + +
Sbjct: 270 --DLTHNTQLIYFQAEGCR 286
Score = 74.7 bits (184), Expect = 2e-14
Identities = 67/442 (15%), Positives = 157/442 (35%), Gaps = 59/442 (13%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI---FNSKLRELEITGKDLKF 58
+LD ++ ++ + + + KL L I + + + N+ L L L
Sbjct: 46 SLDCHNSSITDM------TGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN 99
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
+D + + L ++ +L + L+ + N L+ ++++
Sbjct: 100 LDVTPLTKLT-----YLNCDTNKLTKLDVSQNPLLT-----YLNCARNTLTEIDVSHNTQ 149
Query: 119 NVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED 178
HL I K + L TL NKIT+L+ + + L + + NN
Sbjct: 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNC-----DTNNIT 204
Query: 179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFE 238
++ + L L NK+T+++ L L S N L +++++
Sbjct: 205 KLDLNQ--NIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST-----LS 254
Query: 239 KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEY 298
KL L + + + L + + I+ + + T L ++ +
Sbjct: 255 KLTTLHCIQTDLLEIDL------THNTQLIYFQAEGCR--KIKELDVTHNTQLYLLDCQA 306
Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
I+++ + + +L + L+N L ++ + +L +++ ++ +S
Sbjct: 307 AGITEL-----DLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF--SS 356
Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNL-------PNLVKLDLQDNKLKDFNLNVFSNIT 411
+ + N + Q + N P+L+ ++ + V+ T
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQAT 416
Query: 412 SKQTPMNLNLSNNYITNLYEND 433
+ T NL+ N +T + ++
Sbjct: 417 NTITWENLSTDNPAVTYTFTSE 438
Score = 53.5 bits (129), Expect = 1e-07
Identities = 56/375 (14%), Positives = 124/375 (33%), Gaps = 61/375 (16%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
L+ + N L+ ++++ + +T+L + + ++L L+ + + +D
Sbjct: 131 YLNCARNTLTEIDVSHN-TQLTELDCHLNKKITKLDVTP--QTQLTTLDCSFNKITELDV 187
Query: 62 SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
S ++ L I +L ++ LD S NKL+ +++ L + +T
Sbjct: 188 SQNKLLN-----RLNCDTNNITKLDLNQNIQLT-----FLDCSSNKLTEIDVTPL-TQLT 236
Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
+ + LS L TL + +++ L +A+ E V+
Sbjct: 237 YFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY--FQAEGCRKIKELDVT 294
Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
+ L L + IT+L+ L L L+ +L +++
Sbjct: 295 H----NTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDV------------ 335
Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
+ L+ L+ N +I++ S+ + +LN +
Sbjct: 336 --------------------SHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQT 373
Query: 302 SKIHNNLFHFN---IHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY-NLLKSIKTT 357
+ N I + N + + D + NTIT + T
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTY 433
Query: 358 SFKNLNNMLNIVLSF 372
+F + N + ++
Sbjct: 434 TFTSENGAIVGTVTT 448
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 92.4 bits (230), Expect = 1e-21
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
++ I LE N I I F +K+L+ I LSNN + + D F L+ LN++ L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSP--YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N + + + F+ L ++ ++L+ N+I + +AF +L NL L L DNKL+ FS
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 409 NITSKQTPMNLNLSNN 424
+ + QT ++L+ N
Sbjct: 150 PLRAIQT---MHLAQN 162
Score = 78.2 bits (193), Expect = 1e-16
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 31/162 (19%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
+ + L N I + F L+ + LS N++ EL + F
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQ------------ 77
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
L +L L + N I + L SL + L NKI+ + +
Sbjct: 78 ---------------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122
Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
F ++H L + L +N L+ I TF L+ + T+ L+ N
Sbjct: 123 AFQ-DLHN-LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 77.8 bits (192), Expect = 2e-16
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 447 SNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKR 506
+ E+P N +T + ++ L+ N IK + AF L + L +N I+ +
Sbjct: 19 RGKGLTEIPTNLPET----ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
Query: 507 TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLD 565
F G+ +L + L N+I+ L F F L++L ++ N++ L D F + + L
Sbjct: 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134
Query: 566 ISYNQ 570
+ N+
Sbjct: 135 LYDNK 139
Score = 75.5 bits (186), Expect = 9e-16
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
N+ + + EIRL N +++I F K+L I LS N + + +F+ L ++ ++VL
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
N+I + + F L +L L L NK+ ++ F ++ + L+L +N + +
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL---LSLYDNKLQTI 143
Score = 73.9 bits (182), Expect = 4e-15
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P I + L N I+ +P + LR++ L N+I L AF L L L L
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N I + K F G+ +LQ++ L+ N+I+ L + F L +L++ N+L+++ + FS
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 558 N 558
Sbjct: 150 P 150
Score = 69.3 bits (170), Expect = 1e-13
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNE 475
+ L N I + ++ +DLSNN+I E+ + F SL L L N+
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPD---AFQGLRSLNSLVLYGNK 91
Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
I L + F L L+LL L N I + F + NL ++ L N++ + F
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 536 FKLRILNISHN 546
++ ++++ N
Sbjct: 152 RAIQTMHLAQN 162
Score = 63.1 bits (154), Expect = 2e-11
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 34/163 (20%)
Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN--NNEDQVSDREKLLSNLETLLLR 196
+ + L N I + F +K NN L +L +L+L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLY 88
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
NKIT+L +LF L++LQ L L+ NK+ + + F
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLR--VDAFQ--------------------- 125
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
+L+ L L++ +N ++ I + L ++ ++L N
Sbjct: 126 ------DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 55.0 bits (133), Expect = 1e-08
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
+ L N + V+ +S KL+ + L +Q+ F L L + G
Sbjct: 36 EIRLEQNTIKVIP-PGAFSPYKKLRRID---LSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
+ + S F+ + + L L +I L F + N+ L L NKL + T
Sbjct: 92 ITELPKSLFEGLFSLQLLLLN--ANKINCLRVDAFQDLHNLN--LLSLYDNKLQTIAKGT 147
Query: 116 LYSNVTKLQHL 126
S + +Q +
Sbjct: 148 F-SPLRAIQTM 157
Score = 43.9 bits (104), Expect = 5e-05
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNS--KLRELEITGKD 55
+DLS+N++S L L+ L + +L G+++ +F L+ L +
Sbjct: 60 RIDLSNNQISELAPDAFQ----GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLD 102
+ + AF ++ L+L + +++ + G F + I+ M L
Sbjct: 116 INCLRVDAFQDLHNLNLLSL--YDNKLQTIAKGTFSPLRAIQTMHLA 160
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 91.7 bits (228), Expect = 1e-20
Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 63/255 (24%)
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
E+ L + D + L+ LS NLL + + + + L ++
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
+ LP L LDL N+L+ + + +
Sbjct: 69 KL--QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTV--------------------- 104
Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
LD+S NR+ +P+ L++LYL NE+K L LE LS
Sbjct: 105 -------LDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
L +NN+ + G+ NL + L N L ++P+
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLL------------------------QENSLYTIPKG 190
Query: 555 VFSNTIIEKLDISYN 569
F + ++ + N
Sbjct: 191 FFGSHLLPFAFLHGN 205
Score = 89.0 bits (221), Expect = 8e-20
Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 35/212 (16%)
Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
L + L L N + + L +L+L +L ++ V
Sbjct: 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ----VDG---------- 74
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
L L L + +N ++++ L +L +++ +N+++ +
Sbjct: 75 -----------------TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLP 116
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
+ + L+E+ L N L+ + +L ++L+ N L + L N+
Sbjct: 117 LGALR-GLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
++L N + I F L L N
Sbjct: 175 DTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
Score = 86.3 bits (214), Expect = 7e-19
Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 12/189 (6%)
Query: 383 FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK 442
+ + ++++ L ++ + T L+LS N + +
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTT------ILHLSENLLYTFSLATLMPYT-RLT 58
Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502
L+L + ++ V+ L L L N+++ L L L +L + N +
Sbjct: 59 QLNLDRAELTKLQVDGTLP---VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTS 114
Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TII 561
+ G+ LQ + L NE+ L + KL L++++N L LP + + +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 562 EKLDISYNQ 570
+ L + N
Sbjct: 175 DTLLLQENS 183
Score = 65.9 bits (161), Expect = 5e-12
Identities = 41/195 (21%), Positives = 62/195 (31%), Gaps = 40/195 (20%)
Query: 39 QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
+ L ++ L + L L ++ +L + + +
Sbjct: 27 PDLPKD-TTILHLSENLLYTFSLATLMPYTRLTQLNLD--RAELTKLQ--VDGTLPVLG- 80
Query: 99 MTLDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKDREKLLSNLETLLLRCNKIT 152
TLDLSHN+L L L + L L T++ + L L+ L L+ N++
Sbjct: 81 -TLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 153 DLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLY 212
L L LE L L N +T+L L L
Sbjct: 138 TLPPGLLTP-------------------------TPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 213 NLQELSLSFNKLQII 227
NL L L N L I
Sbjct: 173 NLDTLLLQENSLYTI 187
Score = 57.4 bits (139), Expect = 3e-09
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI--FN--SKLRELEITGKDLKF 58
L LS N L + T+L L L +L + L L+++ L+
Sbjct: 36 LHLSENLLYTFS-LATLMPYTRLTQLN---LDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
+ P + A L + + ++ LP G + +++ L L N+L L L +
Sbjct: 92 L-PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQE--LYLKGNELKTLP-PGLLT 145
Query: 119 NVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
KL+ L T + L NL+TLLL+ N + + F
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 36.6 bits (85), Expect = 0.016
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 15/111 (13%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNS--KLRELEITGKD 55
LD+S N+L+ L + +LQ L LKG++L+ G+ KL +L + +
Sbjct: 104 VLDVSFNRLTSLP-LGALRGLGELQELY---LKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106
L + + ++ L L + +P G F + L N
Sbjct: 160 LTELPAGLLNGLENLDTLLL--QENSLYTIPKGFFG---SHLLPFAFLHGN 205
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 92.6 bits (230), Expect = 7e-20
Identities = 52/307 (16%), Positives = 113/307 (36%), Gaps = 50/307 (16%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
N L + + + + + ++T+L + N ++ + L+ + +S
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAHITTLV---IPDNNLTSLPALPPE------LRTLEVS 89
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
N L + L EL+ + L ++ + + + + NQ+ +
Sbjct: 90 GNQLTSL-PVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVL-- 139
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
P L +L + DN+L + S + L NN +T+L P ++
Sbjct: 140 --PPGLQELSVSDNQLASLP-ALPSELC------KLWAYNNQLTSLPML-----PSGLQE 185
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
L +S+N++ +P + L KL+ N + L A L+ L + N + +
Sbjct: 186 LSVSDNQLASLPTLPSE-----LYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSL 236
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK 563
+ L+ + +S N ++ L L L++ N+L LP + +
Sbjct: 237 ----PVLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETT 288
Query: 564 LDISYNQ 570
+++ N
Sbjct: 289 VNLEGNP 295
Score = 90.7 bits (225), Expect = 3e-19
Identities = 60/366 (16%), Positives = 117/366 (31%), Gaps = 81/366 (22%)
Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL 193
R L + L + + +T L L H+ ++ +NN + L L TL
Sbjct: 35 RACLNNGNAVLNVGESGLTTLPDCLPAHITTLVI-----PDNNLTSLPA---LPPELRTL 86
Query: 194 LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSN 253
+ N++T L L L L S L +
Sbjct: 87 EVSGNQLTSLP-VLPPGLLELSIFSNPLTHLPAL-------------------------- 119
Query: 254 EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
+ L L + N + ++ L +++ N+++ +
Sbjct: 120 ----------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPALPSE--- 162
Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
L ++ NN L + L+EL+ +S N L S+ T + + + N
Sbjct: 163 ---LCKLWAYNNQLTSL-PMLPSGLQELS---VSDNQLASLPTL----PSELYKLWAYNN 211
Query: 374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
++ + P L +L + N+L + S + L +S N +T+L
Sbjct: 212 RLTSL-PA---LPSGLKELIVSGNRLTSLP-VLPSELK------ELMVSGNRLTSLPML- 259
Query: 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELL 493
P + SL + N++ +P + + S + L+ N + A +
Sbjct: 260 ----PSGLLSLSVYRNQLTRLPESLIH--LSSETTVNLEGNPLSERTLQALREITSAPGY 313
Query: 494 SLEHNN 499
S
Sbjct: 314 SGPIIR 319
Score = 89.6 bits (222), Expect = 6e-19
Identities = 69/365 (18%), Positives = 130/365 (35%), Gaps = 51/365 (13%)
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNL- 158
L++ + L+ L L +++T L + L L L TL + N++T L
Sbjct: 44 VLNVGESGLTTLP-DCLPAHITTL-VIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPP 101
Query: 159 -FRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQEL 217
L +N L S L L + N++T L LQEL
Sbjct: 102 GLLELSIF------SNPLTH-----LPALPSGLCKLWIFGNQLTSLP----VLPPGLQEL 146
Query: 218 SLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI 277
S+S N+L + + +L L + S L + L+ L++ +N +
Sbjct: 147 SVSDNQLASLP------ALPSELCKLWAYNNQLTS-------LPMLPSGLQELSVSDNQL 193
Query: 278 KNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYN 337
++ L L N+++ + LKE+ +S N L +
Sbjct: 194 ASLPT-LPSELYKLW---AYNNRLTSLPALP------SGLKELIVSGNRLTSL-PVLPSE 242
Query: 338 LKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
LKEL +S N L S+ + +L++ + NQ+ + P + ++L + ++L+ N
Sbjct: 243 LKELM---VSGNRLTSLP----MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN 294
Query: 398 KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN 457
L + L ITS + + + + + + + P +
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354
Query: 458 FLQTF 462
F
Sbjct: 355 RWHMF 359
Score = 88.4 bits (219), Expect = 1e-18
Identities = 62/389 (15%), Positives = 129/389 (33%), Gaps = 60/389 (15%)
Query: 183 REKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQL 242
R L + L + + +T L L H+ L + N L + + +L+
Sbjct: 35 RACLNNGNAVLNVGESGLTTLPDCLPAHI---TTLVIPDNNLTSLP------ALPPELRT 85
Query: 243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302
LE+S + S P L L + ++ + + L + + N+++
Sbjct: 86 LEVSGNQLTS--LPVLP--PGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT 134
Query: 303 KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
+ L+E+ +S+N L + L +L N L S+
Sbjct: 135 SLPVLPPG------LQELSVSDNQLASL-PALPSELCKLW---AYNNQLTSLP----MLP 180
Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
+ + + +S NQ+ + P L KL +N+L + + + L +S
Sbjct: 181 SGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP----ALPSGLKE---LIVS 229
Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
N +T+L P +K L +S NR+ +P+ L L + N++ L
Sbjct: 230 GNRLTSL-----PVLPSELKELMVSGNRLTSLPMLP-----SGLLSLSVYRNQLTRLPE- 278
Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
+ +L ++LE N ++ + + + M +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA----PRETRAL 334
Query: 543 ISHNRLRSLPRDVFSNTIIEKLDISYNQD 571
+P ++ + +D
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMFGQED 363
Score = 81.1 bits (200), Expect = 3e-16
Identities = 50/279 (17%), Positives = 96/279 (34%), Gaps = 56/279 (20%)
Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL------NNMLNIV--- 369
E R ++ + + LN + + L ++ ++ +N L +
Sbjct: 23 ESRGRAAVVQKMRACLNNGNAVLN---VGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL 79
Query: 370 --------LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-----NLNVFSN-ITSKQT 415
+S NQ+ + P L L L L +F N +TS
Sbjct: 80 PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 138
Query: 416 PM----NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
L++S+N + +L P + L NN++ +P+ L++L +
Sbjct: 139 LPPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPMLP-----SGLQELSV 188
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
N++ L L L + ++ L+ + +S N ++ L
Sbjct: 189 SDNQLASLPTL-PSELYKLWAYNNRLTSLPA-------LPSGLKELIVSGNRLTSLPVL- 239
Query: 532 FYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
+L+ L +S NRL SLP + + L + NQ
Sbjct: 240 ---PSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ 272
Score = 68.0 bits (166), Expect = 4e-12
Identities = 63/391 (16%), Positives = 122/391 (31%), Gaps = 103/391 (26%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI--FNSKLRELEITGKDLKFI 59
L++ + L+ L L +++T L ++ + L + +LR LE++G L +
Sbjct: 44 VLNVGESGLTTLP-DCLPAHITTL------VIPDNNLTSLPALPPELRTLEVSGNQLTSL 96
Query: 60 DPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
+L+ T + LPSGL L + N+L+ L
Sbjct: 97 PVL----PPGLLELSIFSNPLTHLPALPSGL---------CKLWIFGNQLTSL------- 136
Query: 119 NVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED 178
L L+ L + N++ L
Sbjct: 137 ----------------PVLPPGLQELSVSDNQLASLPA---------------------- 158
Query: 179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFE 238
L S L L N++T L LQELS+S N+L + +
Sbjct: 159 -------LPSELCKLWAYNNQLTSLPMLPS----GLQELSVSDNQLASLP------TLPS 201
Query: 239 KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEY 298
+L L + S L + L+ L + N + ++ + L + +
Sbjct: 202 ELYKLWAYNNRLTS-------LPALPSGLKELIVSGNRLTSLPV----LPSELKELMVSG 250
Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
N+++ + L + + N L + ++ +L T+ L N L +
Sbjct: 251 NRLTSLPMLP------SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQA 303
Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
+ + + + +A L
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRAL 334
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 82.8 bits (205), Expect = 3e-18
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS 353
+ L N+ + + F +L++I SNN + IE F +N I L+ N L++
Sbjct: 37 LRLNNNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
++ FK L ++ ++L N+I + ++F+ L ++ L L DN++ F + S
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 414 QTPMNLNLSNN 424
T LNL N
Sbjct: 156 ST---LNLLAN 163
Score = 78.9 bits (195), Expect = 7e-17
Identities = 27/121 (22%), Positives = 53/121 (43%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P Y L L+NN + + LRK+ N+I ++ AF + + L
Sbjct: 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N + V + F G+ +L+ + L N I+ + + F +R+L++ N++ ++ F
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 558 N 558
Sbjct: 151 T 151
Score = 75.1 bits (185), Expect = 1e-15
Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 34/159 (21%)
Query: 367 NIVLSFNQIKYIYPNA-FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
+ L+ N+ + F LP L K++ +NK+ D F +
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG------------- 82
Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATA 483
+ + L++NR++ V F SL+ L L N I + +
Sbjct: 83 ---------------VNEILLTSNRLENVQHK---MFKGLESLKTLMLRSNRITCVGNDS 124
Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
F L + LLSL N I V F + +L ++L N
Sbjct: 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 67.8 bits (166), Expect = 4e-13
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
K L L + NN I +I + + +N I L N++ + + +F + LK +
Sbjct: 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK-GLES-LKTLM 111
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
L +N + + +D+F L + ++L N + ++ +F L+++ + L N
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 67.4 bits (165), Expect = 7e-13
Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 72/200 (36%)
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
L L++N+ +VL ++ L L + NKITD+ F
Sbjct: 36 ELRLNNNEFTVLEATGIFKK------------------LPQLRKINFSNNKITDIEEGAF 77
Query: 160 RHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
S + +LL N++ ++ +F+ L +L+ L L
Sbjct: 78 EGA-------------------------SGVNEILLTSNRLENVQHKMFKGLESLKTLML 112
Query: 220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279
N++ + ++ F L+++ L++ +N I
Sbjct: 113 RSNRIT--CVGNDSFI---------------------------GLSSVRLLSLYDNQITT 143
Query: 280 IRNYSLYNLTSLNYINLEYN 299
+ + L SL+ +NL N
Sbjct: 144 VAPGAFDTLHSLSTLNLLAN 163
Score = 55.4 bits (134), Expect = 6e-09
Identities = 22/132 (16%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
L L++N+ +VL ++ + +L+ + +++ G F S + E+ +T
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKIN---FSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 56 LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
L+ + F +++ L L + + +I + + F + ++ L L N+++ +
Sbjct: 93 LENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVR--LLSLYDNQITTVAPG 147
Query: 115 TLYSNVTKLQHL 126
+ L L
Sbjct: 148 AF-DTLHSLSTL 158
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 84.3 bits (209), Expect = 4e-18
Identities = 54/263 (20%), Positives = 103/263 (39%), Gaps = 23/263 (8%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
+ L+ +TD L ++ ++ + + ++ ++ + L ++
Sbjct: 23 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLN 76
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
N+ NL L WL +D N +K++ + L +L L ++LE+N IS I+
Sbjct: 77 G-----NKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING 129
Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
+L+ + L NN + I L +L+T++L N + I L +
Sbjct: 130 ----LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQ 181
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
N+ LS N I + L NL L+L + + +N SN+ T N + S
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
Query: 427 TNLYENDKKQAPIYIKSLDLSNN 449
+ ++ + P L N
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFTN 262
Score = 73.9 bits (182), Expect = 1e-14
Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 23/239 (9%)
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
+ ++ + L S++ I + I + + ++
Sbjct: 21 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLF 74
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
L+ N L I+ NLK L + L N +K + +S K+L + ++ L N I I N
Sbjct: 75 LNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--N 128
Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
V+LP L L L +NK+ D + V S +T T L+L +N I+++ +
Sbjct: 129 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDT---LSLEDNQISDIVPLAG---LTKL 180
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
++L LS N I ++ +L L L E + NL V + ++
Sbjct: 181 QNLYLSKNHISDLRALAGLK---NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Score = 72.0 bits (177), Expect = 4e-14
Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 30/273 (10%)
Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
I +I F + + L + T L ++ I + + +KS++
Sbjct: 12 TPIKQI----FSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--G 63
Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPM 417
+ L N+ + L+ N++ I P NL NL L L +NK+KD +L + S
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKS----- 116
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEI 476
L+L +N I+++ ++SL L NN+I ++ ++ L L L L+ N+I
Sbjct: 117 -LSLEHNGISDINGLVHLPQ---LESLYLGNNKITDITVLSRLT----KLDTLSLEDNQI 168
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
+ L L+ L L N+I+ + R G+ NL +++L E
Sbjct: 169 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLV 224
Query: 537 KLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
+ + L + P + + EK ++ ++
Sbjct: 225 VPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWH 256
Score = 37.3 bits (87), Expect = 0.009
Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 41/214 (19%)
Query: 92 KIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL--LSNLETLL 145
+ +++ + L L HN +S +N + L +LG + D L L+ L+TL
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL-YLGNNKITDITVLSRLTKLDTLS 162
Query: 146 LRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNG 205
L N+I+D+ L+ L+ L L N I+DL
Sbjct: 163 LEDNQISDIVP---------------------------LAGLTKLQNLYLSKNHISDLRA 195
Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265
L NL L L + +N L + + S P I +
Sbjct: 196 --LAGLKNLDVLELFSQECLNKPIN-----HQSNLVVPNTVKNTDGSLVTPEIISDDGDY 248
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
+ N ++ Y ++ ++
Sbjct: 249 EKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 82.0 bits (203), Expect = 2e-17
Identities = 52/267 (19%), Positives = 108/267 (40%), Gaps = 25/267 (9%)
Query: 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
+I + + T +L + T++ + +I+ + LNN++ + L NQ
Sbjct: 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQ 74
Query: 375 IKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
I + P NL + +L+L N LK+ + +I L+L++ IT++
Sbjct: 75 ITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIK------TLDLTSTQITDVTPLA 126
Query: 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELL 493
++ L L N+I + +L+ L + ++ L NL L L
Sbjct: 127 GLSN---LQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178
Query: 494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553
+ N I+ + +PNL + L N+IS ++ + L I+ +++ + + P
Sbjct: 179 KADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234
Query: 554 DVFSNTIIEKLDISYNQDKIRPGRESN 580
+N ++ + + I P S+
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISD 261
Score = 80.5 bits (199), Expect = 7e-17
Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 23/246 (9%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
L + TL +T + G ++L NL L L N++ + K+ LE+S
Sbjct: 40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA----PLKNLTKITELELS 93
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
+ + L +++ L + + I ++ L L++L + L+ N+I+ I
Sbjct: 94 GNPLKNVSAI-----AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 146
Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
L+ + + N + + NL +L T+ N + I + +L N++
Sbjct: 147 ----LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLI 198
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
+ L NQI + P N NL + L + + + + +N+ + +
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256
Query: 427 TNLYEN 432
+ +N
Sbjct: 257 ATISDN 262
Score = 50.8 bits (122), Expect = 4e-07
Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 25/224 (11%)
Query: 92 KIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL--LSNLETLL 145
IE ++ + L+L N+++ L + +T+L L LK+ + L +++TL
Sbjct: 55 TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITEL-ELSGNPLKNVSAIAGLQSIKTLD 113
Query: 146 LRCNKITDLNGNLFRHLQK-SIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN 204
L +ITD+ L ++ N N ++ L+NL+ L + +++DL
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAG----LTNLQYLSIGNAQVSDLT 167
Query: 205 GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNL 264
+L L L NK+ I ++ L + + +N+ N
Sbjct: 168 P--LANLSKLTTLKADDNKISDISPLAS----LPNLIEVHLK-----NNQISDVSPLANT 216
Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
+ L + + N I N + NL N +
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260
Score = 45.4 bits (108), Expect = 2e-05
Identities = 58/284 (20%), Positives = 110/284 (38%), Gaps = 31/284 (10%)
Query: 44 SKLRELEITGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLD 102
+ L G + I+ + +L L++ + QI +L + I L+
Sbjct: 41 DGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQITDLAP--LKNLTKIT--ELE 91
Query: 103 LSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL--LSNLETLLLRCNKITDLNGNLFR 160
LS N L ++ ++ L L +T + D L LSNL+ L L N+IT+++
Sbjct: 92 LSGNPLKNVSAIAGLQSIKTL-DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LA 148
Query: 161 HLQK-SIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
L + ++ +++ LS L TL NKI+D++ L NL E+ L
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLAN----LSKLTTLKADDNKISDISP--LASLPNLIEVHL 202
Query: 220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279
N++ + +N L ++ ++ + Y N ++ +
Sbjct: 203 KNNQISDVSPLAN----TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK-----GPSGAP 253
Query: 280 IRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
I ++ + + NL +N S I+N + FN K +
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVP 297
Score = 37.4 bits (87), Expect = 0.010
Identities = 59/375 (15%), Positives = 116/375 (30%), Gaps = 123/375 (32%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-SKLRELEITGKDLKFID 60
TL ++ + V L +L LK +Q+ + L ++
Sbjct: 45 TLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAPLKNLTKIT---------- 88
Query: 61 PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
L+++ ++ + + +++I+ TLDL+ ++ ++V
Sbjct: 89 -------------ELELSGNPLKNVSA--IAGLQSIK--TLDLTSTQI---------TDV 122
Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
T L LSNL+ L L N+IT+++
Sbjct: 123 TPLAG------------LSNLQVLYLDLNQITNISPL----------------------- 147
Query: 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
L+NL+ L + +++DL +L L L NK+ I +
Sbjct: 148 ----AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLA--------- 192
Query: 241 QLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
+L L + + NN I ++ L N ++L + L
Sbjct: 193 ----------------------SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228
Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS-- 358
I+ + + + I T + + L++NL I S
Sbjct: 229 ITNQPVFYN----NNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYT 284
Query: 359 FKNLNNMLNIVLSFN 373
F N + F+
Sbjct: 285 FNQSVTFKNTTVPFS 299
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 83.6 bits (206), Expect = 4e-17
Identities = 57/309 (18%), Positives = 105/309 (33%), Gaps = 23/309 (7%)
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
+ ++ + L S++ I + I + + ++
Sbjct: 18 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLF 71
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
L+ N L I+ NLK L + L N +K + +S K+L + ++ L N I I N
Sbjct: 72 LNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--N 125
Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
V+LP L L L +NK+ D + V S +T T L+L +N I+++ +
Sbjct: 126 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDT---LSLEDNQISDIVPLAG---LTKL 177
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
++L LS N I ++ +L L L E + NL V + ++
Sbjct: 178 QNLYLSKNHISDLRALAGLK---NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
+ G + E + FY + + + P
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294
Query: 562 EKLDISYNQ 570
+
Sbjct: 295 DVDGTVIKT 303
Score = 64.4 bits (156), Expect = 5e-11
Identities = 70/417 (16%), Positives = 131/417 (31%), Gaps = 65/417 (15%)
Query: 28 LGTTILKGDQLQGIFN----SKLRELEITGKDLKFIDP-SAFDNIDACYDLTLKITNTQI 82
+G TI ++ IF ++ + + K + + ++ID + N+ I
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSID-----QIIANNSDI 55
Query: 83 EELPSGLFDKIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL- 137
+ ++ I+ + L L+ NKL+ + T N+ L L +KD L
Sbjct: 56 K--------SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWL-FLDENKIKDLSSLK 106
Query: 138 -LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
L L++L L N I+D+NG L LE+L L
Sbjct: 107 DLKKLKSLSLEHNGISDINGL---------------------------VHLPQLESLYLG 139
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
NKITD+ L L LSL N++ I + KLQ L +S N
Sbjct: 140 NNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAG----LTKLQNLYLS-----KNHIS 188
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
L L+ L + + N NL N + + + K
Sbjct: 189 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK- 247
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
++ S FY + ++ + ++ ++ + +++
Sbjct: 248 -PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVE 306
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
P + + + ++ T + + L + E
Sbjct: 307 AGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKT 363
Score = 37.8 bits (87), Expect = 0.009
Identities = 55/440 (12%), Positives = 127/440 (28%), Gaps = 93/440 (21%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-SKLRELEITGKDLKFID 60
L L+ NKL+ + +T L++LG L ++++ + + L++L+
Sbjct: 69 KLFLNGNKLTDI------KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLK---------- 112
Query: 61 PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
+L + + I ++ + +E +L L +NK+ +++
Sbjct: 113 -------------SLSLEHNGISDING--LVHLPQLE--SLYLGNNKI---------TDI 146
Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
T L L+ L+TL L N+I+D+
Sbjct: 147 TVLSR------------LTKLDTLSLEDNQISDIVP------------------------ 170
Query: 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
L+ L+ L L N I+DL L NL L L + + + L
Sbjct: 171 ---LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL-----NKPINHQSNL 220
Query: 241 QLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
+ + S P I + + N ++ Y ++ ++
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280
Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK 360
++ ++ + ++ K + + K +
Sbjct: 281 RVTQ----PLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHE 336
Query: 361 NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN 420
N + + + ++ + ++ + + S + +
Sbjct: 337 WNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLPREDNSLKQGTLAS 396
Query: 421 LSNNYITNLYENDKKQAPIY 440
+T E Y
Sbjct: 397 HRCKALTVDREARNGGKLWY 416
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 83.5 bits (206), Expect = 5e-17
Identities = 57/316 (18%), Positives = 118/316 (37%), Gaps = 35/316 (11%)
Query: 143 TLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD 202
+ N I+ + F K +A N NE +E L++ L L ++
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73
Query: 203 LNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNK 262
L NL + L ++ N L + ++ L+ L+ + ++ L +
Sbjct: 74 LPDNLPP---QITVLEITQNALISLP------ELPASLEYLDACDNRLST-------LPE 117
Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
+L+ L +DNN + + L YIN + N+++ + L+ + +
Sbjct: 118 LPASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPELP------TSLEVLSV 167
Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN---NMLNIVLSFNQIKYIY 379
NN L + + +L+ L+ +S NLL+S+ +N + + N+I +I
Sbjct: 168 RNNQLTFL-PELPESLEALD---VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI- 222
Query: 380 PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPI 439
P ++L + L+DN L S T++ + + + +N +
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS-DGQQNTLHRPLA 281
Query: 440 YIKSLDLSNNRIQEVP 455
+ N+ +V
Sbjct: 282 DAVTAWFPENKQSDVS 297
Score = 81.2 bits (200), Expect = 2e-16
Identities = 51/291 (17%), Positives = 102/291 (35%), Gaps = 65/291 (22%)
Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS----NNYLELIESDTFYNLKELN 342
N SL+ N YN IS + + F + + ++ L N + L++ EL
Sbjct: 9 NNFSLS-QNSFYNTISGTYADYF--SAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ 65
Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
L+ L S+ P+ P + L++ N L
Sbjct: 66 ---LNRLNLSSL-------------------------PDNL--PPQITVLEITQNALISL 95
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+ +++ L+ +N ++ L + P +K LD+ NN++ +P
Sbjct: 96 -PELPASLE------YLDACDNRLSTL-----PELPASLKHLDVDNNQLTMLPELP---- 139
Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L + D N++ L LE+LS+ +N + + + +L+ +D+S N
Sbjct: 140 -ALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPE----LPESLEALDVSTN 190
Query: 523 EISMLT---GEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
+ L + NR+ +P ++ S + + N
Sbjct: 191 LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241
Score = 64.2 bits (156), Expect = 5e-11
Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 33/275 (12%)
Query: 260 LNKNLNTLEWLAMDNNNIKNIRNY-SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK 318
+ E A+ N + + + + L +S + +NL ++
Sbjct: 29 YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP-----PQIT 83
Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI 378
+ ++ N L + + +L+ L+ N L ++ +L ++ + NQ+ +
Sbjct: 84 VLEITQNALISL-PELPASLEYLD---ACDNRLSTL-PELPASLKHLD---VDNNQLTML 135
Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP 438
P L ++ +N+L TS + L++ NN +T L E P
Sbjct: 136 -PEL---PALLEYINADNNQLTMLP----ELPTSLEV---LSVRNNQLTFLPE-----LP 179
Query: 439 IYIKSLDLSNNRIQEVPVNF--LQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
+++LD+S N ++ +P ++ N I H+ +LD + LE
Sbjct: 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILE 238
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
N ++ ++ + SM G+Q
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273
Score = 56.9 bits (137), Expect = 9e-09
Identities = 59/362 (16%), Positives = 122/362 (33%), Gaps = 70/362 (19%)
Query: 1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
M++ L N L+ + Y+ ++ + + Q + E + +
Sbjct: 1 MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEA------VSLLK 54
Query: 61 PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL-----NMAT 115
+ L++ + LP L +I L+++ N L L ++
Sbjct: 55 ECLINQFS-----ELQLNRLNLSSLPDNLPPQIT-----VLEITQNALISLPELPASLEY 104
Query: 116 LYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNN 175
L + +L L +L ++L+ L + N++T L L L+ +NN
Sbjct: 105 LDACDNRLSTL--------PELPASLKHLDVDNNQLTMLP-ELPALLEYINA----DNN- 150
Query: 176 NEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD 235
Q++ +L ++LE L +R N++T L +L+ L +S N L+
Sbjct: 151 ---QLTMLPELPTSLEVLSVRNNQLTFLPELPE----SLEALDVSTNLLE---------- 193
Query: 236 VFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYIN 295
+ + + T + N I +I ++ +L I
Sbjct: 194 --------SLPAVPVR--------NHHSEETEIFFRCRENRITHIPE-NILSLDPTCTII 236
Query: 296 LEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI 354
LE N +S +I +L R+ + + ++ L + T N +
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDV 296
Query: 355 KT 356
Sbjct: 297 SQ 298
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 77.0 bits (190), Expect = 5e-16
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
E L + + + + + + LT L ++NL+YN++ + +F L + L+NN L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--LTELGTLGLANNQL 95
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
+ F +L +L+ + L N LKS+ + F L + + L+ NQ++ I AF L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
NL L L N+L+ F + QT + L N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQT---ITLFGN 189
Score = 71.7 bits (176), Expect = 3e-14
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 31/184 (16%)
Query: 191 ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLF 250
E L L+ + L+ FR L L L+L +N+LQ + + VFD
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS--AGVFD--------------- 80
Query: 251 NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH 310
+L L L + NN + ++ +LT L+ + L N++ + + +F
Sbjct: 81 ------------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
LKE+RL+ N L+ I + F L L T++LS N L+S+ +F L + I L
Sbjct: 129 RLTK--LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 371 SFNQ 374
NQ
Sbjct: 187 FGNQ 190
Score = 70.9 bits (174), Expect = 7e-14
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 11/159 (6%)
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
+ L + + F L L L+L N+L+ + VF ++T T L L+NN +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT---LGLANNQL 95
Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS---LRKLYLDFNEIKHLDATA 483
+L + L L N+++ +P F D L++L L+ N+++ + A A
Sbjct: 96 ASL-PLGVFDHLTQLDKLYLGGNQLKSLPSG---VF-DRLTKLKELRLNTNQLQSIPAGA 150
Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
F L L+ LSL N + V F + LQ I L N
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 62.0 bits (151), Expect = 6e-11
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
K +D + VP KL L + L F L L L+L++N +
Sbjct: 17 KEVDCQGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ 72
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TI 560
+ F + L + L+ N+++ L F +L L + N+L+SLP VF T
Sbjct: 73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132
Query: 561 IEKLDISYNQ 570
+++L ++ NQ
Sbjct: 133 LKELRLNTNQ 142
Score = 58.6 bits (142), Expect = 9e-10
Identities = 46/205 (22%), Positives = 73/205 (35%), Gaps = 61/205 (29%)
Query: 101 LDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDL 154
LDL L+ L+ + +TKL L T+ L+ L TL L N++ L
Sbjct: 40 LDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 155 NGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNL 214
+F HL + L+ L L N++ L +F L L
Sbjct: 99 PLGVFDHL-------------------------TQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 215 QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDN 274
+EL L+ N+LQ I + FD L L+ L++
Sbjct: 134 KELRLNTNQLQSIP--AGAFD---------------------------KLTNLQTLSLST 164
Query: 275 NNIKNIRNYSLYNLTSLNYINLEYN 299
N ++++ + + L L I L N
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 57.0 bits (138), Expect = 3e-09
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 2/141 (1%)
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
L+L + + L + + + L+L N++Q + L L L N++
Sbjct: 39 KLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLA 96
Query: 478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFK 537
L F +L L+ L L N + + F + L+ + L+ N++ + F
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 538 LRILNISHNRLRSLPRDVFSN 558
L+ L++S N+L+S+P F
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDR 177
Score = 45.5 bits (108), Expect = 2e-05
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 17/132 (12%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNS--KLRELEITGKD 55
L+L +N+L L+ A ++ ++T+L LG L +QL G+F+ +L +L + G
Sbjct: 63 WLNLDYNQLQTLS-AGVFDDLTELGTLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMA 114
LK + FD + +L L Q++ +P+G FDK+ N++ TL LS N+L SV + A
Sbjct: 119 LKSLPSGVFDRLTKLKELRLN--TNQLQSIPAGAFDKLTNLQ--TLSLSTNQLQSVPHGA 174
Query: 115 TLYSNVTKLQHL 126
+ + KLQ +
Sbjct: 175 --FDRLGKLQTI 184
Score = 37.8 bits (88), Expect = 0.007
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 12/106 (11%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNS--KLRELEITGKD 55
TL L++N+L+ L ++ ++T+L L L G+QL+ G+F+ KL+EL +
Sbjct: 87 TLGLANNQLASLP-LGVFDHLTQLDKLY---LGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
L+ I AFD + L+L Q++ +P G FD++ ++ +TL
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLS--TNQLQSVPHGAFDRLGKLQTITL 186
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 77.0 bits (190), Expect = 6e-16
Identities = 41/257 (15%), Positives = 84/257 (32%), Gaps = 24/257 (9%)
Query: 193 LLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNS 252
+ R I + + L N + +L + + +Q S S
Sbjct: 2 SIQRPTPINQVFPD--PGLANAVKQNLGKQSVTDLVSQKE----LSGVQNFNGDNSNIQS 55
Query: 253 NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFN 312
+ L+ L + +N I ++ L +LT L +++ N++ ++
Sbjct: 56 LAGM-----QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---- 104
Query: 313 IHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372
L + L NN L +S +LK L +++ N LKSI L+ + + L
Sbjct: 105 -SACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHG 159
Query: 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEN 432
N+I L + +DL K + + + T + + +
Sbjct: 160 NEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNG 217
Query: 433 DKKQAPIYIKSLDLSNN 449
+ L + +
Sbjct: 218 GSYVDGCVLWELPVYTD 234
Score = 61.6 bits (150), Expect = 1e-10
Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 22/222 (9%)
Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMN 418
L N + L + + L + + ++ ++ + F+N+
Sbjct: 16 PGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQFFTNLKE------ 67
Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
L+LS+N I++L + ++ L ++ NR++ + L +L+LD NE++
Sbjct: 68 LHLSHNQISDL---SPLKDLTKLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRD 120
Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKL 538
+ +L LE+LS+ +N + + + L+++DL NEI+ G K+
Sbjct: 121 T--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKV 174
Query: 539 RILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESN 580
++++ + + P I + I P SN
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISN 216
Score = 60.8 bits (148), Expect = 2e-10
Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 25/204 (12%)
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYIT 427
+ I ++P+ L N VK +L + D + S + + N N+ I
Sbjct: 3 IQRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVSQKELSGVQN------FNGDNSNIQ 54
Query: 428 NLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486
+L Q +K L LS+N+I ++ P+ L L +L ++ N +K+L+
Sbjct: 55 SL---AGMQFFTNLKELHLSHNQISDLSPLKDLT----KLEELSVNRNRLKNLNGIPSAC 107
Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
L L L++N + + I + NL+I+ + N++ + F KL +L++ N
Sbjct: 108 ---LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGN 160
Query: 547 RLRSLPRDVFSNTIIEKLDISYNQ 570
+ + + + +D++ +
Sbjct: 161 EITNTG-GLTRLKKVNWIDLTGQK 183
Score = 59.3 bits (144), Expect = 5e-10
Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 27/242 (11%)
Query: 138 LSNLETLLLRCNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
L+N L +TDL +Q +N+N ++ + +NL+ L L
Sbjct: 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNG-----DNSNIQSLAGMQF-FTNLKELHLS 71
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
N+I+DL+ + L L+ELS++ N+L+ + L + +NE
Sbjct: 72 HNQISDLSP--LKDLTKLEELSVNRNRLKNLN-------GIPSACLSRLFLD---NNELR 119
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
+L LE L++ NN +K+I L L+ L ++L N+I+ K+
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG----LTRLKK 173
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
+ I L+ L NT+ S S N + ++ + +
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS--NGGSYVDGCVLWELPV 231
Query: 377 YI 378
Y
Sbjct: 232 YT 233
Score = 32.7 bits (75), Expect = 0.27
Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 17/180 (9%)
Query: 92 KIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL--LSNLETLL 145
+ ++ +T L ++ N+L LN + +++L L L+D + L L NLE L
Sbjct: 77 DLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL-FLDNNELRDTDSLIHLKNLEILS 134
Query: 146 LRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNG 205
+R NK+ + L + ++ N N ++ L + + L K +
Sbjct: 135 IRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGGLTR----LKKVNWIDLTGQKCVNEPV 189
Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265
LY + + SN + + L + Y ++ +N
Sbjct: 190 KYQPELYITNTVKDPDGRWISPYYISN----GGSYVDGCVLWELPVYTDEVSYKFSEYIN 245
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 75.0 bits (185), Expect = 7e-15
Identities = 45/330 (13%), Positives = 99/330 (30%), Gaps = 49/330 (14%)
Query: 263 NLNTLEWLAM-DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
+ + E L + ++ + L + + N +
Sbjct: 10 HSSGRENLYFQGSTALRPYHD-VLSQWQRHYNADRNRWHSAWRQANS------NNPQIET 62
Query: 322 LSNNYL----ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
+ L +L+E T L L L L+++ ++ + +
Sbjct: 63 RTGRALKATADLLEDATQPGRVALE---LRSVPLPQF-PDQAFRLSHLQHMTIDAAGLME 118
Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN--------YITNL 429
+ P+ L L L N L+ +++ + L++ + +
Sbjct: 119 L-PDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRE---LSIRACPELTELPEPLAST 173
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV 489
+ + Q + ++SL L I+ +P + +L+ L + + + L +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPA-IHHLPK 230
Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN--------EISMLTGEQFYFSFKLRIL 541
LE L L F G L+ + L +I LT +L L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT--------QLEKL 282
Query: 542 NISHN-RLRSLPRDVFSNTIIEKLDISYNQ 570
++ L LP + + + +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHL 312
Score = 67.7 bits (166), Expect = 2e-12
Identities = 49/378 (12%), Positives = 112/378 (29%), Gaps = 81/378 (21%)
Query: 187 LSNLETLLL-RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
S E L + + L + + NSN Q+
Sbjct: 11 SSGRENLYFQGSTALRPYHDVL-SQWQRHYNADRNRWHSAWRQANSN------NPQIETR 63
Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
+ + + L + + + + + L+ L ++ ++ + ++
Sbjct: 64 TGRALK--ATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELP 120
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY-NLLKSI--------KT 356
+ + F L+ + L+ N L + + +L L +++ L + +
Sbjct: 121 DTMQQF---AGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 357 TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
+ L N+ ++ L + I+ + P + NL NL L ++++ L ++ +
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEE- 233
Query: 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL-DFNE 475
L+L ++ P F L++L L D +
Sbjct: 234 --LDLRGC------------------------TALRNYPPIFGG--RAPLKRLILKDCSN 265
Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
+ L L LE L L + L + I+ L
Sbjct: 266 LLTLPLD-IHRLTQLEKLDLRGCV---------------NLSRLP-SLIAQLP------- 301
Query: 536 FKLRILNISHNRLRSLPR 553
I+ + + L +
Sbjct: 302 -ANCIILVPPHLQAQLDQ 318
Score = 66.1 bits (162), Expect = 5e-12
Identities = 44/329 (13%), Positives = 107/329 (32%), Gaps = 54/329 (16%)
Query: 138 LSNLETLLL-RCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
S E L + + L + + N + N + R+ +N +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQ------WQRHYNADRNRWHSAWRQANSNNPQIETRT 64
Query: 197 CNKITDLNGNLFR-HLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEF 255
+ L L L L + F LQ + I + E
Sbjct: 65 GRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFR-LSHLQHMTIDAAGLM--EL 119
Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEY-NKISKIHNNLFHFNIH 314
P + + LE L + N ++ + S+ +L L +++ +++++ L +
Sbjct: 120 PDTM--QQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 315 ------KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
L+ +RL + + + NL+ L ++ + + L ++ + +L + +
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEEL 234
Query: 369 VLS-FNQIKYIYPNAFVNLPNLVKLDLQDN--------------KLKDFNL--------- 404
L ++ P F L +L L+D +L+ +L
Sbjct: 235 DLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 405 -NVFSNITSKQTPMNLNLSNNYITNLYEN 432
++ + + + + + + L ++
Sbjct: 294 PSLIAQLPANCI---ILVPPHLQAQLDQH 319
Score = 60.3 bits (147), Expect = 4e-10
Identities = 46/335 (13%), Positives = 105/335 (31%), Gaps = 55/335 (16%)
Query: 79 NTQIEELPSGLFD----KIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDR 134
+T + L + + + + T L+ +
Sbjct: 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR--ALKATADLLEDAT 79
Query: 135 EKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLL 194
+ L LR + FR LS+L+ +
Sbjct: 80 QP---GRVALELRSVPLPQFPDQAFR--------------------------LSHLQHMT 110
Query: 195 LRCNKITDLNGNLFRHLYNLQELSLSFNKLQII-----ELNS-NVFDVFEKLQLLEISFS 248
+ + +L + L+ L+L+ N L+ + LN + +L E+
Sbjct: 111 IDAAGLMELPDTMQ-QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
L +++ + + L L+ L ++ I+++ S+ NL +L + + + +S + +
Sbjct: 170 LASTDASGEH---QGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGPAI 225
Query: 309 FHFNIHKRLKEIRLS-NNYLELIESDTFYNLKELNTITLS-YNLLKSIKTTSFKNLNNML 366
H +L+E+ L L F L + L + L ++ L +
Sbjct: 226 HHL---PKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLE 280
Query: 367 NIVLSFN-QIKYIYPNAFVNLPNLVKLDLQDNKLK 400
+ L + + P+ LP + + +
Sbjct: 281 KLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQA 314
Score = 45.7 bits (109), Expect = 2e-05
Identities = 47/254 (18%), Positives = 84/254 (33%), Gaps = 60/254 (23%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL--------NMATLY-SNVTKLQ 124
+ I + ELP + + +E TL L+ N L L + L +L
Sbjct: 108 HMTIDAAGLMELPDTMQ-QFAGLE--TLTLARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 125 HL----GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
L +T + L NL++L L I L ++
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN-------------------- 204
Query: 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLS-FNKLQIIELNSNVFDVFEK 239
L NL++L +R + ++ L + HL L+EL L L+ +F
Sbjct: 205 ------LQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCTALRNYP------PIFGG 251
Query: 240 LQLLEISFSLFNSNEF---PYYILNKNLNTLEWLAMDNNNIKNIRN--YSLYNLTSLNYI 294
L+ L + + P I L LE L + N+ + L + I
Sbjct: 252 RAPLK-RLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCV--NLSRLPSLIAQLPANCII 306
Query: 295 NLEYNKISKIHNNL 308
+ + +++ +
Sbjct: 307 LVPPHLQAQLDQHR 320
Score = 28.4 bits (64), Expect = 7.0
Identities = 43/241 (17%), Positives = 79/241 (32%), Gaps = 76/241 (31%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
TL L+ N L L +++ L L ++ +L EL P
Sbjct: 131 TLTLARNPLR-----ALPASIASLNRLRELSIRA-------CPELTEL-----------P 167
Query: 62 SAFDNIDACYDL-------TLKITNTQIEELPSGLFDKIENIEQMT-LDLSHNKLSVL-- 111
+ DA + +L++ T I LP+ I N++ + L + ++ LS L
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS----IANLQNLKSLKIRNSPLSALGP 223
Query: 112 ------NMATLY-SNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQK 164
+ L T L++ + L+ L+L+ + + L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGG-----RAPLKRLILK-------DCSNLLTLPL 271
Query: 165 SIVKAKKNNNNNEDQVSDREKLLSNLETLLLR-CNKITDLNGNLFRHLYNLQELSLSFNK 223
I + L+ LE L LR C ++ L +L L + + +
Sbjct: 272 DIHR------------------LTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHL 312
Query: 224 L 224
Sbjct: 313 Q 313
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 73.4 bits (180), Expect = 2e-14
Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 18/247 (7%)
Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
Y LK ++T IK+ S K L + + L +L L
Sbjct: 46 EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAA---RIPSRILFGALRVLGISGLQELTL 102
Query: 395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK---QAPIYIKSLDLSNNRI 451
++ ++ T LNL N + +K L ++
Sbjct: 103 ENLEVTGTAPPPLLEATGPDL-NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 452 QEVPVNFLQTFADSLRKLYLDFNEIK-------HLDATAFGNLDVLELLSLEHNNIAVVV 504
++ F +L L L N L F L VL L + + V
Sbjct: 162 LNFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220
Query: 505 KRTFIGMPNLQIIDLSFNEIS-MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK 563
LQ +DLS N + + +L LN+S L+ +P+ + + +
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK--LSV 278
Query: 564 LDISYNQ 570
LD+SYN+
Sbjct: 279 LDLSYNR 285
Score = 72.2 bits (177), Expect = 5e-14
Identities = 45/280 (16%), Positives = 86/280 (30%), Gaps = 24/280 (8%)
Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS--LFNSNEFPYYILNKNLNTLEWL 270
+ L ++ D+ + L L ++ S + ++ L+ L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 271 AMDNNNI-----KNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
++N + + + +L LN N+ + L + + LK + ++
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW-LKPGLKVLSIAQA 159
Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKT-------TSFKNLNNMLNIVLSFNQIKYI 378
+ + L+T+ LS N + F L + +
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP 438
L LDL N L+D + S+ +LNLS + + + P
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN--SLNLSFTGLKQVPKG----LP 273
Query: 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
+ LDLS NR+ P + L L N
Sbjct: 274 AKLSVLDLSYNRLDRNP---SPDELPQVGNLSLKGNPFLD 310
Score = 65.7 bits (160), Expect = 8e-12
Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 32/284 (11%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL----QL 242
+LE LL R D +L + ++ LSL ++ + S + ++ L
Sbjct: 42 GRSLEYLLKR----VDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 243 LEISFS-LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY----SLYNLTSLNYINLE 297
E++ L + P +L L L + N + + + L +++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 298 YNKISKIHNNLFHFNIHKRLKEIRLSNNYL----ELIESDTFYNLKELNTITLSYNLLKS 353
+ L + LS+N LI + L + L +++
Sbjct: 158 QAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215
Query: 354 IKTTSFKNLNNMLNIV---LSFNQIKYI-YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
+ + LS N ++ + L L+L LK + +
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK 275
Query: 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE 453
++ L+LS N + D+ + +L L N +
Sbjct: 276 LSV------LDLSYNRLDRNPSPDELPQ---VGNLSLKGNPFLD 310
Score = 65.7 bits (160), Expect = 8e-12
Identities = 44/300 (14%), Positives = 88/300 (29%), Gaps = 40/300 (13%)
Query: 260 LNKNLNTLEWLAMDNNNIKNIRNYS-LYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRL 317
L +LE+L + ++ ++ + SL + + +I +I L
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 318 KEIRLSNNYL--ELIESDTFYNLKELNTITLSYN----LLKSIKTTSFKNLNNMLNIVLS 371
+E+ L N + +LN + L + + + ++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM-NLNLSNNYITNLY 430
P L LDL DN + + K + L L N +
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 431 ENDKK--QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLD 488
A + ++ LDLS+N +++ + L L L F +K +
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---- 273
Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
L ++DLS+N + ++ L++ N
Sbjct: 274 -----------------------AKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPF 308
Score = 64.9 bits (158), Expect = 1e-11
Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 19/269 (7%)
Query: 170 KKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYN---LQELSLSFNKLQI 226
+ + + Q +D K LS L+ L +R +I + LQEL+L ++
Sbjct: 51 RVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109
Query: 227 IELNSNVFDVFEKLQLLEIS-FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL 285
+ L +L + S + + + L+ L++ + N +
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169
Query: 286 YNLTSLNYINLEYNKISKIHN--NLFHFNIHKRLKEIRLSNNYLELIE---SDTFYNLKE 340
+L+ ++L N + L+ + L N +E S +
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229
Query: 341 LNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
L + LS+N L+ S + + ++ LSF +K + L LDL N
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYN-- 284
Query: 400 KDFNLNVFSNITSKQTPMNLNLSNNYITN 428
L+ + NL+L N +
Sbjct: 285 ---RLDRNPSPDELPQVGNLSLKGNPFLD 310
Score = 28.3 bits (63), Expect = 6.7
Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 36/161 (22%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
TLDLS N K L L+ ++ + L L+ +D
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGVCSALAAARVQLQGLDL 235
Query: 62 S-----AFDNIDACYDL----TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLN 112
S +C +L ++ T ++++P GL K+ LDLS+N+L
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS-----VLDLSYNRLDRN- 289
Query: 113 MATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITD 153
L + L L+ N D
Sbjct: 290 --------------------PSPDELPQVGNLSLKGNPFLD 310
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 70.2 bits (171), Expect = 4e-13
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 306 NNLFHFNIHKRLKEIRLS-NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
++L H + L E+ + +L+ +E L EL +T+ + L+ + +F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
+ + LSFN ++ + L L +L L N L
Sbjct: 82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 69.0 bits (168), Expect = 8e-13
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN-EIKHLDATAFGNLDVLELLSLEHNNIA 501
L + + + + A++L +LY++ ++HL+ L L L++ + +
Sbjct: 12 GLRCTRDGALDSLHHL--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549
V F P L ++LSFN + L+ + L+ L +S N L
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLH 116
Score = 67.5 bits (164), Expect = 2e-12
Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 333 DTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
+ L + + L+ ++ + L + N+ + + ++++ P+AF P L +
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
L+L N L+ + ++ + L LS N +
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQ----ELVLSGNPLH 116
Score = 65.9 bits (160), Expect = 8e-12
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 482 TAFGNLDVLELLSLEHNN-IAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI 540
+ L L +E+ + + R G+ L+ + + + + + + F+F+ +L
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 541 LNISHNRLRSLPRDVFSNTIIEKLDISYN 569
LN+S N L SL +++L +S N
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 57.1 bits (137), Expect = 6e-09
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 31/120 (25%)
Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267
NL EL + + + L + L L
Sbjct: 27 LPGAENLTELYIENQQ-HLQHLELRDL---------------------------RGLGEL 58
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
L + + ++ + + + L+ +NL +N + + L+E+ LS N L
Sbjct: 59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ---GLSLQELVLSGNPL 115
Score = 52.8 bits (126), Expect = 1e-07
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 31/121 (25%)
Query: 357 TSFKNLNNMLNIVLSFNQ-IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT 415
N+ + + Q ++++ L L L + + L+ + F
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR--- 81
Query: 416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE 475
+ L+LS N ++ + +Q SL++L L N
Sbjct: 82 -------------------------LSRLNLSFNALESLSWKTVQGL--SLQELVLSGNP 114
Query: 476 I 476
+
Sbjct: 115 L 115
Score = 46.3 bits (109), Expect = 1e-05
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 31/112 (27%)
Query: 138 LSNLETLLLR-CNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
NL L + + L R L L L +
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGL-------------------------GELRNLTIV 64
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
+ + + + F L L+LSFN L+ + + L L E+ S
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-----KTVQGLSLQELVLS 111
Score = 42.8 bits (100), Expect = 2e-04
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 44 SKLRELEITG-KDLKFIDPSAFDNIDACYDL-TLKITNTQIEELPSGLFDKIENIEQMTL 101
L EL I + L+ ++ + L L I + + + F + L
Sbjct: 31 ENLTELYIENQQHLQHLELRDLRGLGE---LRNLTIVKSGLRFVAPDAFHFTPRLS--RL 85
Query: 102 DLSHNKLSVLNMATLYSNVTKLQHL 126
+LS N L L+ T+ LQ L
Sbjct: 86 NLSFNALESLSWKTVQG--LSLQEL 108
Score = 32.8 bits (74), Expect = 0.33
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 44 SKLRELEITGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLD 102
+LR L I L+F+ P AF L+ L ++ +E L + L
Sbjct: 56 GELRNLTIVKSGLRFVAPDAFHFTPR---LSRLNLSFNALESLSWKTVQ---GLSLQELV 109
Query: 103 LSHNKL 108
LS N L
Sbjct: 110 LSGNPL 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 70.9 bits (173), Expect = 4e-13
Identities = 48/328 (14%), Positives = 114/328 (34%), Gaps = 22/328 (6%)
Query: 104 SHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQ 163
H+ L ++++ + ++ T+ LL ++ L T N H+
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300
Query: 164 KSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK 223
+ A N+ S+ + + + L LS K
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360
Query: 224 LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
+++ + + ++LQ LE N++ + + L+ L + ++
Sbjct: 361 STVLQ---SELESCKELQELEPE------NKWCLLTIILLMRALDPLLYEKETLQYFST- 410
Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES-DTFYNLKELN 342
L + + L+ + + N + ++ + L++ L ++ + + L+
Sbjct: 411 -LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469
Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
LS+N L+++ + L + + S N ++ + NLP L +L L +N+L+
Sbjct: 470 ---LSHNRLRAL-PPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS 523
Query: 403 -NLNVFSNITSKQTPMNLNLSNNYITNL 429
+ + LNL N +
Sbjct: 524 AAIQPLVSCPRLVL---LNLQGNSLCQE 548
Score = 66.7 bits (162), Expect = 9e-12
Identities = 50/332 (15%), Positives = 103/332 (31%), Gaps = 22/332 (6%)
Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265
L + +S + + S V ++ L + + +N
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
+ WL N L + + S+ L ++
Sbjct: 297 SHVWLCDLPAASLN------DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350
Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVN 385
S L + S L+ ++ + L ++ ++ + + + Y
Sbjct: 351 LFRCELS--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQY 407
Query: 386 LPNLVKLD-----LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
L +D D+ F L L+L++ +T L ++
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL--- 464
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
+ LDLS+NR++ +P L L N ++++D NL L+ L L +N +
Sbjct: 465 VTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL 520
Query: 501 AVV-VKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
+ + P L +++L N + G Q
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552
Score = 55.1 bits (132), Expect = 4e-08
Identities = 36/326 (11%), Positives = 98/326 (30%), Gaps = 17/326 (5%)
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
+ L + L++ + + + L ++ L +
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293
Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
N L L++ + + L + + +
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSATDEQLF 352
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
LS + + + + L +L+ ++ + + + + +
Sbjct: 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411
Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486
+ + + ++S L N + ++ + R L+L ++ L
Sbjct: 412 KAV-DPMRAAYLDDLRSKFLLENSVLKMEYADV-------RVLHLAHKDLTVLCH--LEQ 461
Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
L ++ L L HN + + + L+++ S N + + G +L+ L + +N
Sbjct: 462 LLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN 518
Query: 547 RLRSLP--RDVFSNTIIEKLDISYNQ 570
RL+ + + S + L++ N
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNS 544
Score = 54.4 bits (130), Expect = 7e-08
Identities = 43/253 (16%), Positives = 80/253 (31%), Gaps = 23/253 (9%)
Query: 61 PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT----LDLSHNKLSVLNMATL 116
T + + L + +LS K +VL +
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ--SE 367
Query: 117 YSNVTKLQHL---GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
+ +LQ L L L+ L+ LL + + L
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLDDLR 426
Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
+ + S + +++ L L +T L L + L LS N+L+ +
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA--- 481
Query: 234 FDVFEKLQLLEISF-SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY-SLYNLTSL 291
L++L+ S +L N + NL L+ L + NN ++ L + L
Sbjct: 482 LAALRCLEVLQASDNALENVDGVA------NLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 292 NYINLEYNKISKI 304
+NL+ N + +
Sbjct: 536 VLLNLQGNSLCQE 548
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 66.6 bits (163), Expect = 2e-12
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
LN+++ + +N++IK+++ L ++ Y+ L NK+ + L + L
Sbjct: 39 ELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHD----ISALKELTNLTYLIL 92
Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNA 382
+ N L+ + + F L L + L N L+S+ F L N+ + L+ NQ++ +
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Query: 383 FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
F L NL +LDL N+L+ VF +T + L L N
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD---LRLYQN 191
Score = 64.7 bits (158), Expect = 1e-11
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
L + +LA+ N + +I LT+L Y+ L N++ + N +F LKE+ L
Sbjct: 62 LPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQSLPNGVFDK--LTNLKELVLV 117
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
N L+ + F L L + L++N L+S+ F L N+ + LS+NQ++ + F
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
L L L L N+LK VF +TS Q + L +N
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY---IWLHDN 215
Score = 63.1 bits (154), Expect = 4e-11
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 18/184 (9%)
Query: 391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNR 450
K +L+ + D + + S + +N+ I ++ ++ L L N+
Sbjct: 23 KANLKKKSVTD--AVTQNELNSIDQ---IIANNSDIKSVQGIQY---LPNVRYLALGGNK 74
Query: 451 IQEVPVNFLQTFADSL---RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
+ ++ L L L N+++ L F L L+ L L N + +
Sbjct: 75 LHDISA-----L-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDI 566
F + NL ++L+ N++ L F L L++S+N+L+SLP VF T ++ L +
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 567 SYNQ 570
NQ
Sbjct: 189 YQNQ 192
Score = 62.7 bits (153), Expect = 4e-11
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 11/188 (5%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
L++++ ++ + I + G ++L N++ L+L NKL I L L ++
Sbjct: 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILT 93
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
+ S P + +K L L+ L + N ++++ + LT+L Y+NL +N++ +
Sbjct: 94 GNQLQS--LPNGVFDK-LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
+F + L E+ LS N L+ + F L +L + L N LKS+ F L ++
Sbjct: 151 GVFDKLTN--LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
Query: 367 NIVLSFNQ 374
I L N
Sbjct: 209 YIWLHDNP 216
Score = 58.9 bits (143), Expect = 1e-09
Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 35/216 (16%)
Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
L + + LN++ I+ + + IK + LPN+ L L NKL
Sbjct: 23 KANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-- 76
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
+++ +T+ L L+ N++Q +P
Sbjct: 77 DISALKELTNLTY----------------------------LILTGNQLQSLPNGVFDKL 108
Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
+L++L L N+++ L F L L L+L HN + + K F + NL +DLS+N
Sbjct: 109 T-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 523 EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
++ L F +L+ L + N+L+S+P VF
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Score = 55.0 bits (133), Expect = 2e-08
Identities = 53/238 (22%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL-------NMATLYSNVTKLQHL 126
+ + + + E + +++ + + N+ L KL +
Sbjct: 23 KANLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78
Query: 127 GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ-----VS 181
L+NL L+L N++ L +F L + N+ Q V
Sbjct: 79 SAL---KE---LTNLTYLILTGNQLQSLPNGVFDKLTNL---KELVLVENQLQSLPDGVF 129
Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
D+ L+NL L L N++ L +F L NL EL LS+N+LQ L VFD
Sbjct: 130 DK---LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--SLPEGVFD------ 178
Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L L+ L + N +K++ + LTSL YI L N
Sbjct: 179 ---------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 65.9 bits (161), Expect = 2e-12
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
T+ + L N+I+K+ +F LKE+ L +N L + F +L +L + L
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDS--LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N L + + F L ++ + + N++ + P L +L L L N+LK F
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 409 NITSKQTPMNLNLSNN 424
++S L N
Sbjct: 157 RLSSLTH---AYLFGN 169
Score = 57.4 bits (139), Expect = 2e-09
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
++D + R VP + LYL N+I L+ F +L L+ L L N +
Sbjct: 22 TTVDCRSKRHASVPAGIPTN----AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
+ F + L ++DL N++++L F L+ L + N+L LPR + T +
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHL 137
Query: 562 EKLDISYNQDKIRP 575
L + NQ K P
Sbjct: 138 THLALDQNQLKSIP 151
Score = 55.9 bits (135), Expect = 6e-09
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
+ L NQI + P F +L NL +L L N+L + VF ++T L+L N +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV---LDLGTNQL 100
Query: 427 TNLYEN--DKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAF 484
T L D+ +++K L + N++ E+P + L L LD N++K + AF
Sbjct: 101 TVLPSAVFDR---LVHLKELFMCCNKLTELPRGIERL--THLTHLALDQNQLKSIPHGAF 155
Query: 485 GNLDVLELLSLEHN 498
L L L N
Sbjct: 156 DRLSSLTHAYLFGN 169
Score = 52.4 bits (126), Expect = 7e-08
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + + L +N + +E F +L L + L N L ++ F +L + + L
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLK 400
NQ+ + F L +L +L + NKL
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Score = 52.0 bits (125), Expect = 1e-07
Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 41/166 (24%)
Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ-----VSDREKLLSNLETL 193
+N + L L N+IT L +F L + +N+ V D L+ L L
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINL---KELYLGSNQLGALPVGVFDS---LTQLTVL 93
Query: 194 LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSN 253
L N++T L +F L +L+EL + NKL + +
Sbjct: 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP---RGIE------------------ 132
Query: 254 EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L L LA+D N +K+I + + L+SL + L N
Sbjct: 133 ---------RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 48.5 bits (116), Expect = 2e-06
Identities = 42/187 (22%), Positives = 62/187 (33%), Gaps = 56/187 (29%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
+N + L L N+IT L +F L NL+EL L N+L L VFD
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFD------------ 85
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
+L L L + N + + + L L + + NK
Sbjct: 86 ---------------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK------- 123
Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
L E+ L L + L N LKSI +F L+++ +
Sbjct: 124 ---------LTEL-----------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Query: 368 IVLSFNQ 374
L N
Sbjct: 164 AYLFGNP 170
Score = 45.1 bits (107), Expect = 2e-05
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P + L L +N+I ++ + +L++LYL N++ L F +L L +L L
Sbjct: 39 PTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N + V+ F + +L+ + + N+++ L L L + N+L+S+P F
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 558 N 558
Sbjct: 157 R 157
Score = 40.8 bits (96), Expect = 5e-04
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 46/159 (28%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNSKLRELEITGKDLKF 58
L L N+++ L ++ ++ L+ L L +QL G+F+ L +L
Sbjct: 45 LYLHDNQITKLE-PGVFDSLINLKELY---LGSNQLGALPVGVFD-SLTQLT-------- 91
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL------- 111
L + Q+ LPS +FD++ ++++ L + NKL+ L
Sbjct: 92 ---------------VLDLGTNQLTVLPSAVFDRLVHLKE--LFMCCNKLTELPRGIERL 134
Query: 112 -NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCN 149
++ L + +L+ + DR LS+L L N
Sbjct: 135 THLTHLALDQNQLKSIPHGAF-DR---LSSLTHAYLFGN 169
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 64.6 bits (158), Expect = 3e-12
Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 16/173 (9%)
Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK 318
I +N+L ++ + N N+ ++ + ++ + + + + + L+
Sbjct: 38 ITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP----ISGLSNLE 91
Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN-QIKY 377
+R+ + + L L + +S++ T L + +I LS+N I
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNL 429
I P LP L L++Q + + D+ + F + L + I
Sbjct: 152 IMPLK--TLPELKSLNIQFDGVHDYRGIEDFPKLNQ------LYAFSQTIGGK 196
Score = 61.1 bits (149), Expect = 5e-11
Identities = 26/192 (13%), Positives = 63/192 (32%), Gaps = 20/192 (10%)
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
+ ++ NI + + SL YI L ++ + +K++
Sbjct: 20 STFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG----IEYAHNIKDLT 72
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
++N + L L + + + S K + L ++ + +S +
Sbjct: 73 INNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL--YENDKKQAPI 439
LP + +DL N ++ + ++ LN+ + + + E+ K
Sbjct: 131 KINTLPKVNSIDLSYNG-AITDIMPLKTLPELKS---LNIQFDGVHDYRGIEDFPK---- 182
Query: 440 YIKSLDLSNNRI 451
+ L + I
Sbjct: 183 -LNQLYAFSQTI 193
Score = 60.4 bits (147), Expect = 1e-10
Identities = 31/194 (15%), Positives = 61/194 (31%), Gaps = 19/194 (9%)
Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMN 418
LN +L + I + +L + L + + D + NI
Sbjct: 20 STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLTGIEYAHNIKD------ 70
Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
L ++N + TN ++ L + + + L SL L + +
Sbjct: 71 LTINNIHATNYNPISGLSN---LERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDD 126
Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTG-EQFYFSFK 537
T L + + L +N + +P L+ +++ F+ + G E F K
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFP---K 182
Query: 538 LRILNISHNRLRSL 551
L L +
Sbjct: 183 LNQLYAFSQTIGGK 196
Score = 57.3 bits (139), Expect = 1e-09
Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%)
Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
K + T + L ITL+ + + T + +N+ ++ ++
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT 79
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
P L NL +L + + + S +TS L++S++ +
Sbjct: 80 NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL---LDISHSAHDDSILTKINT 134
Query: 437 APIYIKSLDLS-NNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
P + S+DLS N I ++ P+ L L+ L + F+ + D + L L
Sbjct: 135 LP-KVNSIDLSYNGAITDIMPLKTLP----ELKSLNIQFDGVH--DYRGIEDFPKLNQLY 187
Query: 495 LEHNNIA 501
I
Sbjct: 188 AFSQTIG 194
Score = 55.4 bits (134), Expect = 5e-09
Identities = 30/190 (15%), Positives = 69/190 (36%), Gaps = 18/190 (9%)
Query: 167 VKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQI 226
++ +++ + +++L + L +TDL G + +N+++L+++
Sbjct: 25 YLNGLLGQSSTANITEAQ--MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN 80
Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
S L+ L I S++ P L +L L + ++ + +
Sbjct: 81 YNPISG----LSNLERLRIMGKDVTSDKIPN---LSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 287 NLTSLNYINLEYN-KISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345
L +N I+L YN I+ I LK + + + + + +LN +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLY 187
Query: 346 LSYNLLKSIK 355
+ K
Sbjct: 188 AFSQTIGGKK 197
Score = 53.8 bits (130), Expect = 2e-08
Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 15/168 (8%)
Query: 138 LSNLETLLLRCNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
+++L + L +TDL G +++ + NN + LSNLE L +
Sbjct: 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTI------NNIHATNYNPISGLSNLERLRIM 96
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
+T L +L L +S + L + K+ +++S++ ++ P
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK--INTLPKVNSIDLSYNGAITDIMP 154
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKI 304
K L L+ L + + + + R + + LN + I
Sbjct: 155 ----LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
Score = 53.4 bits (129), Expect = 2e-08
Identities = 25/214 (11%), Positives = 69/214 (32%), Gaps = 38/214 (17%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
S + L + + +L ++L+ + + I
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT---------------GIE- 63
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
+ ++ L ++N + N + L++L + + ++ +
Sbjct: 64 ---------------YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTS--DK 104
Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
+ + + L + +S++ + L ++N+I LSYN + K L + +
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKS 163
Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD 401
+ + F+ + + P L +L +
Sbjct: 164 LNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195
Score = 40.3 bits (95), Expect = 5e-04
Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 15/146 (10%)
Query: 92 KIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLS---NLETL 144
+ IE L +++ + N + SN+ +L+ +G + D+ LS +L L
Sbjct: 58 DLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117
Query: 145 LLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKL--LSNLETLLLRCNKITD 202
+ + D L K N ++D L L L++L ++ + + D
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG----AITDIMPLKTLPELKSLNIQFDGVHD 173
Query: 203 LNGNLFRHLYNLQELSLSFNKLQIIE 228
G L +L + +
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGGKK 197
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 63.6 bits (156), Expect = 5e-12
Identities = 17/139 (12%), Positives = 45/139 (32%), Gaps = 7/139 (5%)
Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
L L + ++ ++ L + + Y +++++ + +++
Sbjct: 25 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGEL---PEKSKLQE 80
Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNA 382
L + L E + + Y L +K + L + + ++ + A
Sbjct: 81 IYQELTRL-KAAVGELPEKSKLQEIYQELTELKA-AVGELPEKSKLQEIYQELTQL-KAA 137
Query: 383 FVNLPNLVKLDLQDNKLKD 401
LP+ K +L D
Sbjct: 138 VGELPDQSKQQQIYQELTD 156
Score = 61.3 bits (150), Expect = 3e-11
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 5/129 (3%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
L + + + KL + E+ L A A G L L + +
Sbjct: 7 SKLQEIYQELTRLKAAVGE--LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL- 62
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
+K +P + + E++ L + L + L L V
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELP-EKSKLQEIYQELTELKAAVGELPEK 121
Query: 562 EKLDISYNQ 570
KL Y +
Sbjct: 122 SKLQEIYQE 130
Score = 60.6 bits (148), Expect = 4e-11
Identities = 20/178 (11%), Positives = 49/178 (27%), Gaps = 24/178 (13%)
Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
L + + Y +++++ + +++ L + L E + +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGEL---PEKSKLQEIYQELTRL-KAAVGELPEKSKLQE 57
Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
Y L +K + L + + ++ + A LP KL +L +
Sbjct: 58 IYQELTRLK-AAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTELK-AA 114
Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI------KSLDLSNNRIQEVPVNF 458
+ K L +T L + + ++ F
Sbjct: 115 VGELPEKSK---LQEIYQELTQL--------KAAVGELPDQSKQQQIYQELTDLKTAF 161
Score = 59.8 bits (146), Expect = 9e-11
Identities = 25/174 (14%), Positives = 43/174 (24%), Gaps = 23/174 (13%)
Query: 385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI--- 441
LP KL +L + K L +T L +
Sbjct: 2 ELPEKSKLQEIYQELTRLK-AAVGELPEKSK---LQEIYQELTRL--------KAAVGEL 49
Query: 442 ---KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
L + + + KL + E+ L A A G L L +
Sbjct: 50 PEKSKLQEIYQELTRLKAAVGE--LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 106
Query: 499 NIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
+ +K +P + + E++ L + L L
Sbjct: 107 EL-TELKAAVGELPEKSKLQEIYQELTQLKAAVGELP-DQSKQQQIYQELTDLK 158
Score = 59.0 bits (144), Expect = 1e-10
Identities = 21/171 (12%), Positives = 44/171 (25%), Gaps = 23/171 (13%)
Query: 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
+++ L + L E + + Y L +K + L + + +
Sbjct: 4 PEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQE 61
Query: 375 IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDK 434
+ + A LP KL +L + K L +T L
Sbjct: 62 LTRL-KAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSK---LQEIYQELTEL----- 111
Query: 435 KQAPIYI------KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL 479
+ L + ++ + K + E+ L
Sbjct: 112 ---KAAVGELPEKSKLQEIYQELTQLKAAVGE--LPDQSKQQQIYQELTDL 157
Score = 47.8 bits (115), Expect = 1e-06
Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 63/227 (27%)
Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
L L ++T L+ ++ + L L
Sbjct: 3 LPEKSKLQEIYQELT--------RLKAAVGE------------------LPEKSKLQEIY 36
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
++T L + L +L + +L
Sbjct: 37 QELTRLKAAVGE-LPEKSKLQEIYQELT----------------------------RLKA 67
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
+ L L + ++ ++ L + + Y +++++ +
Sbjct: 68 AV--GELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELKAAVGEL---PEK 121
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
+++ L + L + + Y L +K T+F+ L +
Sbjct: 122 SKLQEIYQELTQL-KAAVGELPDQSKQQQIYQELTDLK-TAFERLGH 166
Score = 42.1 bits (100), Expect = 1e-04
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 485 GNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544
G L L + + +K +P + + E++ L + L
Sbjct: 1 GELPEKSKLQEIYQEL-TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELP-EKSKLQEI 58
Query: 545 HNRLRSLPRDVFSNTIIEKLDISYNQ 570
+ L L V KL Y +
Sbjct: 59 YQELTRLKAAVGELPEKSKLQEIYQE 84
Score = 41.7 bits (99), Expect = 2e-04
Identities = 22/213 (10%), Positives = 49/213 (23%), Gaps = 71/213 (33%)
Query: 100 TLDLSHNKLSVL--------NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKI 151
L + +L+ L + L +L L + + L L ++
Sbjct: 8 KLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGE-----LPEKSKLQEIYQEL 62
Query: 152 TDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHL 211
T L + L L ++T L + L
Sbjct: 63 TRLKAAVGE--------------------------LPEKSKLQEIYQELTRLKAAVG-EL 95
Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLA 271
+L + +L E + L L
Sbjct: 96 PEKSKLQEIYQELT----------------------------ELKAAV--GELPEKSKLQ 125
Query: 272 MDNNNIKNIRNYSLYNLTSLNYINLEYNKISKI 304
+ ++ ++ L + Y +++ +
Sbjct: 126 EIYQELTQLKA-AVGELPDQSKQQQIYQELTDL 157
Score = 34.0 bits (79), Expect = 0.053
Identities = 20/168 (11%), Positives = 56/168 (33%), Gaps = 33/168 (19%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNS-----KLRELEITGKDL 56
L + +L+ L + V +L +L + + + +L+ ++L
Sbjct: 8 KLQEIYQELT-----RLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 57 KFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMT-LDLSHNKLSVL--- 111
+ + + + + L+ ++ L + + + + + L + +L+ L
Sbjct: 63 TRLKAA----VGELPEKSKLQEIYQELTRLKAA----VGELPEKSKLQEIYQELTELKAA 114
Query: 112 -----NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDL 154
+ L +L L + + L + ++TDL
Sbjct: 115 VGELPEKSKLQEIYQELTQLKAAVGE-----LPDQSKQQQIYQELTDL 157
Score = 32.0 bits (74), Expect = 0.24
Identities = 16/154 (10%), Positives = 40/154 (25%), Gaps = 51/154 (33%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMT-LDLSHNKLSVL--------NMATLYSNVTKLQ 124
L+ ++ L + + + + + L + +L+ L + L +L
Sbjct: 31 KLQEIYQELTRLKAA----VGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 86
Query: 125 HLGTTILKDREKLLSNLETLLLRCNKIT---------------DLNGNLFRHLQKSIVKA 169
L + + L L ++T L+ ++ +
Sbjct: 87 RLKAAVGE-----LPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGE- 140
Query: 170 KKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL 203
L + ++TDL
Sbjct: 141 -----------------LPDQSKQQQIYQELTDL 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 9e-12
Identities = 114/637 (17%), Positives = 202/637 (31%), Gaps = 239/637 (37%)
Query: 3 LDLSHNKL--SVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRE------------ 48
L LSH L +L + + QLQ FN L E
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIAS-------------QLQEQFNKILPEPTEGFAADDEPT 55
Query: 49 --LEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106
E+ GK L ++ + +E G FD
Sbjct: 56 TPAELVGKFLGYVS-------------------SLVEPSKVGQFD--------------- 81
Query: 107 KLSVLNMATLYSNVTKLQHLGTTILKDRE------KLLSNLETLLLRCNKITDLNGNLFR 160
VLN+ L L+ + KLL +T L++ ++
Sbjct: 82 --QVLNLC--------LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI-------- 123
Query: 161 HLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN--------GNLFRHLY 212
K+ + A+ ++ R + L R + GN +
Sbjct: 124 ---KNYITAR--------IMAKR-PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKL--QLLEISFSLFNSNEFPYYILNKNLNTLEWL 270
L++L +++ L V D+ + L E+ + + + + LN LEWL
Sbjct: 172 ELRDLYQTYHVL--------VGDLIKFSAETLSELIRT--TLDAEKVF--TQGLNILEWL 219
Query: 271 AMDNNNIKNIRNYSLYNLTSLNYINL----EYNKISKIHNNLFHFNIHKRLKEIRLSNNY 326
+N + ++Y L S I + Y +K+ + LK + +
Sbjct: 220 --ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL-GFTPGELRSYLKG--ATGHS 274
Query: 327 LELI------ESDT---FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
L+ E+D+ F+ ++ K+I + F +
Sbjct: 275 QGLVTAVAIAETDSWESFFV-----------SVRKAIT--------------VLF----F 305
Query: 378 I-------YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN------- 423
I YPN + P++++ L++N+ +PM L++SN
Sbjct: 306 IGVRCYEAYPNTSLP-PSILEDSLENNE-------------GVPSPM-LSISNLTQEQVQ 350
Query: 424 NYI--TNLYENDKKQAPIYIKSLDLSNNRIQEV---PVNFLQTFADSLRKLY----LD-- 472
+Y+ TN + KQ + I S L N V P L +LRK LD
Sbjct: 351 DYVNKTNSHLPAGKQ--VEI-S--LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 473 ---FNEIK--------------H---L-DATAFGNLDVLEL-LSLEHNNIAVVVKRTFIG 510
F+E K H L A+ N D+++ +S +I + V TF G
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 511 MPNLQIIDLSFNE--ISMLTGEQFYFSFKLRILNISH 545
+L+++ S +E + + + +H
Sbjct: 466 S-DLRVLSGSISERIVDCIIRLPVKWE-TTTQFKATH 500
Score = 29.2 bits (65), Expect = 4.8
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 14/47 (29%)
Query: 538 LRILNISHNRLR---SLP----------RDVFSNTIIEKLDISYNQD 571
R L +SH L +P ++ F+ + E + + D
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE-GFAAD 51
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 63.1 bits (154), Expect = 1e-11
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
+ L N++ +I ++ F L ++ L N L IE + F + + L
Sbjct: 29 LHTTELLLNDNELGRISSDGL-FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
N +K I F L+ + + L NQI + P +F +L +L L+L N
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 61.6 bits (150), Expect = 4e-11
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 318 KEIRLSNNYLELIESD-TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
E+ L++N L I SD F L L + L N L I+ +F+ +++ + L N+IK
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
I F+ L L L+L DN++ F ++ S + LNL++N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS---LNLASN 136
Score = 52.7 bits (127), Expect = 4e-08
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 191 ETLLLRCNKITDLNGN-LFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
LLL N++ ++ + LF L +L +L L N+L IE N F+ +Q L++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQL---- 85
Query: 250 FNSNEF---PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
N+ + L+ L+ L + +N I + S +L SL +NL N
Sbjct: 86 -GENKIKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 50.8 bits (122), Expect = 2e-07
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA-FGNLDVLELLSLEHNNI 500
++D + ++E+P + +L L+ NE+ + + FG L L L L+ N +
Sbjct: 11 TTVDCTGRGLKEIPRDIPLH----TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
+ F G ++Q + L N+I ++ + F +L+ LN+ N++ + F +
Sbjct: 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124
Score = 49.2 bits (118), Expect = 5e-07
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P++ L L++N + + + L L KL L N++ ++ AF ++ L L
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
N I + + F+G+ L+ ++L N+IS
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Score = 48.8 bits (117), Expect = 8e-07
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 30/135 (22%)
Query: 215 QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDN 274
EL L+ N+L I + +F L L L +
Sbjct: 32 TELLLNDNELGRISSDG-LFG---------------------------RLPHLVKLELKR 63
Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
N + I + + + + L NKI +I N +F +H+ LK + L +N + + +
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLHQ-LKTLNLYDNQISCVMPGS 121
Query: 335 FYNLKELNTITLSYN 349
F +L L ++ L+ N
Sbjct: 122 FEHLNSLTSLNLASN 136
Score = 48.1 bits (115), Expect = 2e-06
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF--ADSLRKLYLDFNE 475
L L++N + + + ++ L+L N++ + N F A +++L L N+
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN---AFEGASHIQELQLGENK 89
Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
IK + F L L+ L+L N I+ V+ +F + +L ++L+ N
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 40.8 bits (96), Expect = 4e-04
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 28/125 (22%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPS 62
L L+ N+L ++ L+ + L L LK +QL GI +P+
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLE---LKRNQLTGI------------------EPN 72
Query: 63 AFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMATLYSNVT 121
AF+ +L L +I+E+ + +F + ++ TL+L N++ V+ + + ++
Sbjct: 73 AFEGASHIQELQL--GENKIKEISNKMFLGLHQLK--TLNLYDNQISCVMPGS--FEHLN 126
Query: 122 KLQHL 126
L L
Sbjct: 127 SLTSL 131
Score = 34.2 bits (79), Expect = 0.062
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 47/149 (31%)
Query: 75 LKITNTQIEELPS-GLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
L + + ++ + S GLF ++ ++ L+L N+L+ +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLV--KLELKRNQLTGIEPNAFEG--------------- 76
Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL 193
S+++ L L NKI +++ +F L L+TL
Sbjct: 77 ----ASHIQELQLGENKIKEISNKMFLG-------------------------LHQLKTL 107
Query: 194 LLRCNKITDLNGNLFRHLYNLQELSLSFN 222
L N+I+ + F HL +L L+L+ N
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 34.2 bits (79), Expect = 0.064
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
L+L N+L+ + + + +Q L L ++++ +F +L+ L +
Sbjct: 58 KLELKRNQLTGIE-PNAFEGASHIQELQ---LGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 56 LKFIDPSAFDN 66
+ + P +F++
Sbjct: 114 ISCVMPGSFEH 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 61.6 bits (150), Expect = 4e-11
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
Y++LE N + + N +F L ++ L N L+ + + F L L + LS
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDE--LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
N L+S+ F L + + L+ NQ++ + F L L L L N+LK VF
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145
Query: 409 NITSKQTPMNLNLSNN 424
+TS Q + L +N
Sbjct: 146 RLTSLQY---IWLHDN 158
Score = 55.8 bits (135), Expect = 4e-09
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + + L N L+ + + F L L + L N L+S+ F L ++ + LS
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
NQ++ + F L L +L L N+L+ VF +T + L L N
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD---LRLYQN 134
Score = 54.7 bits (132), Expect = 9e-09
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
+++ + VP L L+ N +K L F L L L L N +
Sbjct: 10 TTVECYSQGRTSVPTGI----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ 65
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TI 560
+ F + +L ++LS N++ L F +L+ L ++ N+L+SLP VF T
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125
Query: 561 IEKLDISYNQDKIRP 575
++ L + NQ K P
Sbjct: 126 LKDLRLYQNQLKSVP 140
Score = 54.7 bits (132), Expect = 1e-08
Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 142 ETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ-----VSDREKLLSNLETLLLR 196
L L N + L +F L + N+ Q V ++ L++L L L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSL---TQLYLGGNKLQSLPNGVFNK---LTSLTYLNLS 84
Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
N++ L +F L L+EL+L+ N+LQ L VFD
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ--SLPDGVFD--------------------- 121
Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L L+ L + N +K++ + LTSL YI L N
Sbjct: 122 ------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 47.0 bits (112), Expect = 3e-06
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 55/184 (29%)
Query: 191 ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLF 250
L L N + L +F L +L +L L NKLQ + + VF+
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP--NGVFN--------------- 73
Query: 251 NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH 310
L +L +L + N ++++ N LT L + L N++ + + +F
Sbjct: 74 ------------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121
Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
L +L + L N LKS+ F L ++ I L
Sbjct: 122 --------------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155
Query: 371 SFNQ 374
N
Sbjct: 156 HDNP 159
Score = 46.6 bits (111), Expect = 5e-06
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P LDL N ++ +P SL +LYL N+++ L F L L L+L
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
N + + F + L+ + L+ N++ L F +L+ L + N+L+S+P VF
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145
Query: 558 N 558
Sbjct: 146 R 146
Score = 46.2 bits (110), Expect = 6e-06
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 37/160 (23%)
Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
+ L N +K + F L +L +L L NKL+ VF+ +TS
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY----------- 80
Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVN-FLQTFADSLRK---LYLDFNEIKHLDAT 482
L+LS N++Q +P F D L + L L+ N+++ L
Sbjct: 81 -----------------LNLSTNQLQSLPNGVF-----DKLTQLKELALNTNQLQSLPDG 118
Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
F L L+ L L N + V F + +LQ I L N
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 40.8 bits (96), Expect = 5e-04
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 48/167 (28%)
Query: 75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDR 134
L + ++ LP+G+FD++ ++ L L NKL +L + V ++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLT--QLYLGGNKL-----QSLPNGVF-----------NK 74
Query: 135 EKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLL 194
L++L L L N++ L + V D+ L+ L+ L
Sbjct: 75 ---LTSLTYLNLSTNQLQSL----------------------PNGVFDK---LTQLKELA 106
Query: 195 LRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
L N++ L +F L L++L L N+L+ + VFD LQ
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQ 151
Score = 39.3 bits (92), Expect = 0.002
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 35/129 (27%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNSKLRELEITGKDLKF 58
LDL N L L ++ +T L L L G++LQ G+FN KL L
Sbjct: 33 LDLETNSLKSLP-NGVFDELTSLTQLY---LGGNKLQSLPNGVFN-KLTSLT-------- 79
Query: 59 IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
L ++ Q++ LP+G+FDK+ +++ L L+ N+L L ++
Sbjct: 80 ---------------YLNLSTNQLQSLPNGVFDKLTQLKE--LALNTNQLQSLP-DGVFD 121
Query: 119 NVTKLQHLG 127
+T+L+ L
Sbjct: 122 KLTQLKDLR 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 4e-11
Identities = 70/460 (15%), Positives = 146/460 (31%), Gaps = 134/460 (29%)
Query: 67 IDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHL 126
+D C ++ ++ +F + L ++ +VL M LQ L
Sbjct: 168 LDVCLSYKVQ------CKMDFKIF-------WLNLKNCNSPETVLEM---------LQKL 205
Query: 127 GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRH--LQKS--IVKAKKNNNNNEDQVSD 182
I + + + LR + I L + + ++ V +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----------LNVQN 255
Query: 183 REKLLSNLETLLLRC--------NKITD-LNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
+ L C ++TD L+ H+ L S++ ++ L
Sbjct: 256 AK----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKY 310
Query: 234 FDV-FEKL--QLLEIS---FSLFNSNEFPYYILNKNLNTLE-WLAMDNNNIKNIRNYSLY 286
D + L ++L + S+ + + L T + W ++ + + I SL
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAES------IRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
L Y + ++++S +F + H + I LS + ++I+SD + +L
Sbjct: 365 VLEPAEYRKM-FDRLS-----VFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKL----H 412
Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ-DNKLKDFNLN 405
Y+L++ K I + + K+K
Sbjct: 413 KYSLVE-------KQPKEST---------ISIP-------------SIYLELKVK----- 438
Query: 406 VFSNITSKQTPMNLNLSNNY-ITNLYENDKKQAPI---YIKSL---DLSNNRIQEVPVNF 458
+ ++ ++ ++Y I +++D P Y S L N E
Sbjct: 439 -----LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER---- 489
Query: 459 LQTFADSLRKLYLDF----NEIKHLDATAFGNLDVLELLS 494
R ++LDF +I+H + +L L
Sbjct: 490 ----MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Score = 62.9 bits (152), Expect = 2e-10
Identities = 80/511 (15%), Positives = 168/511 (32%), Gaps = 126/511 (24%)
Query: 176 NEDQVSDREKLLSNLETLL--LRCNKITDLNGNLF-----RHLYNL-QELSLSFNKLQII 227
E Q ++ L + + C + D+ ++ H+ +S + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 228 EL-NSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
+ F + ++L I++ F + ++ T ++ + + + ++ Y
Sbjct: 72 LSKQEEMVQKFVE-EVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRL---------K-----EIRLSNNYLELIES 332
N++ L K+ L K + K ++ LS ++
Sbjct: 130 NVSRLQ-------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 333 DTFY-NLKELNT----ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY---------I 378
F+ NLK N+ + + LL I ++ NI L + I+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 379 YPNAFVNLPNLVKLDLQDNK-LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
Y N LV L++Q+ K FNL+ +T++ + LS T++ +
Sbjct: 243 YENCL-----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 438 PIYIKSLDLS----NNRIQEVPVNFLQT-------FADSLRKLYLDFNEIKHLDATAFGN 486
+ L + R Q++P L T A+S+R ++ KH++
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 487 -----LDVLELLSLEHN--NIAVVVKRTFIGMPNLQII--DLSFNEISMLTGE------- 530
L+VLE ++V I L +I D+ +++ ++ +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 531 ------------QFYFSFKLRILNIS--HNRL---RSLPRDVFSNTII------------ 561
Y K+++ N H + ++P+ S+ +I
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 562 ----------EK--------LDISYNQDKIR 574
E+ LD + + KIR
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Score = 46.0 bits (108), Expect = 4e-05
Identities = 44/275 (16%), Positives = 80/275 (29%), Gaps = 66/275 (24%)
Query: 340 ELNTITLSY------NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY--PNAFVNLPNLVK 391
E Y + K++ +M +LS +I +I +A L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 392 --LDLQDNKLKDF-----NLN---VFSNIT--SKQTPMNLNLSNNYITNLYENDKKQAPI 439
L Q+ ++ F +N + S I +Q M + LY ND +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-ND---NQV 125
Query: 440 YIKSLDLSNNRIQEVPVNFLQTFADSLRK-----LY---------------LDFNEIKHL 479
+ K + +R+Q P L+ LR + L + +
Sbjct: 126 FAK---YNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 480 DATAF----GNLDVLELLSLEHNNIAVVVKRTFIGMPN-LQIIDLSFNEISMLTGEQFYF 534
D F N + E + + + + + I L + I
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-------- 232
Query: 535 SFKLRILNISHNRLRSLP--RDVFSNTIIEKLDIS 567
+LR L S L +V + ++S
Sbjct: 233 --ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 60.8 bits (148), Expect = 6e-11
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
+ + L+ N+ + + L ++ K L I LSNN + + + +F N+ +L T+ LSY
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNY---KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
N L+ I +F L ++ + L N I + AF +L L L + N
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 58.5 bits (142), Expect = 4e-10
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + + E+ L N L+ N K L I LS N + ++ SF N+ +L ++LS
Sbjct: 28 GIPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
+N+++ I P F L +L L L N + F+++++ L + N
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH---LAIGAN 136
Score = 50.4 bits (121), Expect = 2e-07
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 29/127 (22%)
Query: 173 NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSN 232
+ N V +L + L N+I+ L+ F ++ L L LS+N+L+ +
Sbjct: 39 DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR--CIPPR 96
Query: 233 VFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLN 292
FD L +L L++ N+I + + +L++L+
Sbjct: 97 TFD---------------------------GLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Query: 293 YINLEYN 299
++ + N
Sbjct: 130 HLAIGAN 136
Score = 47.3 bits (113), Expect = 3e-06
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
N L + + NN I + N S N+T L + L YN++ I F + L+ + L
Sbjct: 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD-GLKS-LRLLSL 109
Query: 323 SNNYLELIESDTFYNLKELNTITLSYN 349
N + ++ F +L L+ + + N
Sbjct: 110 HGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 45.8 bits (109), Expect = 8e-06
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P + L L N+ VP L + L N I L +F N+ L L L +
Sbjct: 30 PRDVTELYLDGNQFTLVPKELSNY--KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISML 527
N + + RTF G+ +L+++ L N+IS++
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Score = 44.2 bits (105), Expect = 3e-05
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNE 475
L L N T + + ++ +DLSNNRI + +F++ L L L +N
Sbjct: 35 ELYLDGNQFTLVPKELSNYK--HLTLIDLSNNRISTLSNQ---SFSNMTQLLTLILSYNR 89
Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
++ + F L L LLSL N+I+VV + F + L + + N
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 39.2 bits (92), Expect = 0.001
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNS--KLRELEITGKD 55
+DLS+N++S L+ +SN+T+L L IL ++L+ F+ LR L + G D
Sbjct: 58 LIDLSNNRISTLS-NQSFSNMTQLLTL---ILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 56 LKFIDPSAFDN 66
+ + AF++
Sbjct: 114 ISVVPEGAFND 124
Score = 36.1 bits (84), Expect = 0.016
Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 33 LKGDQLQ---GIFNS--KLRELEITGKDLKFIDPSAFDNIDACYDLT----LKITNTQIE 83
L G+Q ++ L ++++ + + +F N +T L ++ ++
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------MTQLLTLILSYNRLR 91
Query: 84 ELPSGLFDKIENIEQMTLDLSHNKL-SVLNMATLYSNVTKLQHL 126
+P FD ++++ L L N + V A +++++ L HL
Sbjct: 92 CIPPRTFDGLKSLR--LLSLHGNDISVVPEGA--FNDLSALSHL 131
Score = 35.7 bits (83), Expect = 0.022
Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNS--KLRELEITGKDL 56
L L N+ +++ SN L + L +++ F++ +L L ++ L
Sbjct: 36 LYLDGNQFTLVPKE--LSNYKHLTLID---LSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 57 KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
+ I P FD + + L+L I +P G F+ + + + +
Sbjct: 91 RCIPPRTFDGLKSLRLLSLH--GNDISVVPEGAFNDLSALSHLAI 133
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 62.6 bits (153), Expect = 7e-11
Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 42/264 (15%)
Query: 284 SLYNLTSLNYINLEYNKIS---KIHNNLFHFNIHKRLKEIRLSN-NYLELIESDTFYNLK 339
+ +N ++L + I ++L + L + + N L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANL---PYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
+L+ + +++ + + ++ + S+N + P + +LPNLV + N++
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 400 KDFNLNVFSNITSKQTPMNLNLSNNYIT----------NLYENDKKQAPIYIKSLDLSNN 449
+ + + + T ++ +S N +T NL +DLS N
Sbjct: 162 SGAIPDSYGSFSKLFT--SMTISRNRLTGKIPPTFANLNL------------AFVDLSRN 207
Query: 450 RIQ-EVPVNFLQTFADSLRKLYLDFNEIKHLDAT--AFGNLDVLELLSLEHNNIAVVVKR 506
++ + V F + +K++L N L G L L L +N I + +
Sbjct: 208 MLEGDASVLFGS--DKNTQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 507 TFIGMPNLQIIDLSFNEISMLTGE 530
+ L +++SFN L GE
Sbjct: 263 GLTQLKFLHSLNVSFN---NLCGE 283
Score = 57.9 bits (141), Expect = 2e-09
Identities = 56/261 (21%), Positives = 94/261 (36%), Gaps = 30/261 (11%)
Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265
+ Y + L LS L + L L I P I L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLT 101
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSN 324
L +L + + N+ L + +L ++ YN +S + ++ L I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL---PNLVGITFDG 158
Query: 325 NYLELIESDTFYNLKELNT-ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
N + D++ + +L T +T+S N L +F NL N+ + LS N ++ F
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT--------NLYENDKK 435
+ N K+ L N L F+L + L+L NN I L
Sbjct: 218 GSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNG---LDLRNNRIYGTLPQGLTQL------ 267
Query: 436 QAPIYIKSLDLSNNRIQ-EVP 455
++ SL++S N + E+P
Sbjct: 268 ---KFLHSLNVSFNNLCGEIP 285
Score = 56.0 bits (136), Expect = 1e-08
Identities = 45/220 (20%), Positives = 74/220 (33%), Gaps = 46/220 (20%)
Query: 187 LSNLETLLLRCNKITDLNGNL---FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL 243
L+ L L + ++ G + + L L S+N L
Sbjct: 100 LTQLHYLYITHTNVS---GAIPDFLSQIKTLVTLDFSYNALS-----------------G 139
Query: 244 EISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-NIRNYSLYNLTSL-NYINLEYNKI 301
+ S+ +L L + D N I I + S + + L + + N++
Sbjct: 140 TLPPSIS------------SLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRL 186
Query: 302 S-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK-SIKTTSF 359
+ KI + N L + LS N LE S F + K I L+ N L +
Sbjct: 187 TGKIPPTFANLN----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--GKV 240
Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
N+ + L N+I P L L L++ N L
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 42.1 bits (100), Expect = 3e-04
Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 29/207 (14%)
Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN---------YITN 428
+ + + LDL L + S++ + L + I
Sbjct: 41 VLCDTDTQTYRVNNLDLSGLNL-PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 429 LYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
L + L +++ + +P + +L L +N + + +L
Sbjct: 100 L---------TQLHYLYITHTNVSGAIPDFL--SQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNL-QIIDLSFNEISMLTGE--QFYFSFKLRILNIS 544
L ++ + N I+ + ++ L + +S N LTG+ + + L +++S
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---RLTGKIPPTFANLNLAFVDLS 205
Query: 545 HNRLR-SLPRDVFSNTIIEKLDISYNQ 570
N L S+ +K+ ++ N
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNS 232
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 61.5 bits (150), Expect = 3e-10
Identities = 76/494 (15%), Positives = 152/494 (30%), Gaps = 128/494 (25%)
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHL----------GTTILKDREKLLSNLETLLLRCN 149
+LD+ +LS A L + + Q + + ++ L L LR N
Sbjct: 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66
Query: 150 KITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN----G 205
++ D+ +++ + + ++ L L+ +T
Sbjct: 67 ELGDVGV-------HCVLQGLQTPS-------------CKIQKLSLQNCCLTGAGCGVLS 106
Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265
+ R L LQEL LS N L ++ + + E L
Sbjct: 107 STLRTLPTLQELHLSDNLLG----DAGLQLLCEGLL--------------------DPQC 142
Query: 266 TLEWLAMDNNNI-----KNIRNYSLYNLTSLNYINLEYNKIS-----KIHNNLFHFNIHK 315
LE L ++ ++ + + + L + + N I+ + L
Sbjct: 143 RLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC-- 199
Query: 316 RLKEIRLSNNYL---------ELIESDTFYNLKELNTITLSYNLL-----KSIKTTSFKN 361
+L+ ++L + + ++ S +L+EL L N L +
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKA--SLRELA---LGSNKLGDVGMAELCPGLLHP 254
Query: 362 LNNMLNIVLSFNQI-----KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
+ + + + I + +L +L L N+L D + +
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313
Query: 417 M--NLNLSNNYITN---------LYENDKKQAPIYIKSLDLSNNRIQEVPVNF----LQT 461
+L + + T L +N + L +SNNR+++ V L
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRF------LLELQISNNRLEDAGVRELCQGLGQ 367
Query: 462 FADSLRKLYLDFNEI-----KHLDATAFGNLDVLELLSLEHNNI-----AVVVKRTFIGM 511
LR L+L ++ L A L L L +N + +V+
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSL-AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426
Query: 512 PNLQIIDLSFNEIS 525
L+ + L S
Sbjct: 427 CLLEQLVLYDIYWS 440
Score = 59.2 bits (144), Expect = 2e-09
Identities = 66/433 (15%), Positives = 136/433 (31%), Gaps = 76/433 (17%)
Query: 188 SNLETLLLRCNKITDLN-GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
++++L ++C +++D L L Q + L L IS
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD-------------IS 49
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNI-----KNIRNYSLYNLTSLNYINLEYNKI 301
+L + L L + +N + + + ++L+ +
Sbjct: 50 SAL------------RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97
Query: 302 SKIHNNLF--HFNIHKRLKEIRLSNNYL-----ELIESDTFYNLKELNTITLSYNLLKSI 354
+ + L+E+ LS+N L +L+ L + L Y L +
Sbjct: 98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157
Query: 355 KTTSF----KNLNNMLNIVLSFNQI-----KYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
+ + + +S N I + + + L L L+ + N
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217
Query: 406 VFSN-ITSKQTPMNLNLSNNYITN-----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFL 459
+ SK + L L +N + + L + +++L + I L
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR-LRTLWIWECGITAKGCGDL 276
Query: 460 -QTFAD--SLRKLYLDFNEI-----KHLDATAFGNLDVLELLSLEHNNI----AVVVKRT 507
+ SL++L L NE+ + L T LE L ++ +
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQF-----YFSFKLRILNISHNRL-----RSLPRDVFS 557
L + +S N + + LR+L ++ + SL + +
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396
Query: 558 NTIIEKLDISYNQ 570
N + +LD+S N
Sbjct: 397 NHSLRELDLSNNC 409
Score = 51.5 bits (124), Expect = 5e-07
Identities = 76/530 (14%), Positives = 169/530 (31%), Gaps = 152/530 (28%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQH--LGTTILKGDQLQGIF-----NSKLRELEITGK 54
+LD+ +LS A L + + Q L L + + I N L EL +
Sbjct: 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66
Query: 55 DLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
+ + + L+ + +I+ L L + L+
Sbjct: 67 E---LGDVGVHCVLQG----LQTPSCKIQ----------------KLSLQNCCLTGAGCG 103
Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
L S + L L+ L L N + D + + + +
Sbjct: 104 VLSSTLRTLP---------------TLQELHLSDNLLGDAGL-------QLLCEGLLDPQ 141
Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLN----GNLFRHLYNLQELSLSFNKLQIIELN 230
LE L L ++ + ++ R + +EL++S N +
Sbjct: 142 -------------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN----E 184
Query: 231 SNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI-----KNIRNYSL 285
+ V + + L + LE L +++ + +++ +
Sbjct: 185 AGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI-V 223
Query: 286 YNLTSLNYINLEYNKIS-----KIHNNLFHFNIHKRLKEIRLSNNYL---------ELIE 331
+ SL + L NK+ ++ L H + RL+ + + + ++
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPS--SRLRTLWIWECGITAKGCGDLCRVLR 281
Query: 332 SDTFYNLKELNTITLSYNLL-----KSIKTTSFKNLNNMLNIVLSFNQI-----KYIYPN 381
+ +LKEL+ L+ N L + + T + + ++ + + +
Sbjct: 282 AKE--SLKELS---LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-S 335
Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM--NLNLSNNYITN---------LY 430
L++L + +N+L+D + + + L L++ +++ L
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395
Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVN----FLQTFADSLRKLYLDFNEI 476
N ++ LDLSNN + + + ++ L +L L
Sbjct: 396 ANHS------LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 56.1 bits (136), Expect = 2e-09
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
+S + LE NK+ + + +F +L ++ LS N ++ + F L +L + L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDK--LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
N L+S+ F L + + L NQ+K + F L +L K+ L N
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 55.3 bits (134), Expect = 4e-09
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + L +N L+ + F L +L ++LS N ++S+ F L + + L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
N+++ + F L L +L L N+LK +F +TS Q + L N
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK---IWLHTN 134
Score = 48.8 bits (117), Expect = 6e-07
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 29/113 (25%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
L+ L L L N+I L +F L L L L NKLQ L + VFD
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ--SLPNGVFD----------- 97
Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L L+ LA+D N +K++ + LTSL I L N
Sbjct: 98 ----------------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 44.9 bits (107), Expect = 1e-05
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
+ L +++N ++++ + LT L ++L N+I + + +F + +L + L N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKLTILYLHEN 86
Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
L+ + + F L +L + L N LKS+ F L ++ I L N
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
Score = 44.2 bits (105), Expect = 2e-05
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
+ ++ + VP S +L L+ N+++ L F L L LSL N I
Sbjct: 10 TEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
+ F + L I+ L N++ L F +L+ L + N+L+S+P +F
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122
Score = 39.2 bits (92), Expect = 0.001
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN-FLQTFADSLRK---LYLDF 473
L L +N + +L + + L LS N+IQ +P F D L K LYL
Sbjct: 32 RLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVF-----DKLTKLTILYLHE 85
Query: 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
N+++ L F L L+ L+L+ N + V F + +LQ I L N
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 34.2 bits (79), Expect = 0.049
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 47 RELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106
LE+ L+ + FD + L+L + QI+ LP G+FDK+ + L L N
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSL--SQNQIQSLPDGVFDKLTKLTI--LYLHEN 86
Query: 107 KLSVLNMATLYSNVTKLQHLG 127
KL L ++ +T+L+ L
Sbjct: 87 KLQSLP-NGVFDKLTQLKELA 106
Score = 34.2 bits (79), Expect = 0.062
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 510 GMP-NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDIS 567
G+P + ++L N++ L F +L L++S N+++SLP VF T + L +
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 568 YNQ 570
N+
Sbjct: 85 ENK 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 58.6 bits (142), Expect = 2e-09
Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 57/324 (17%)
Query: 290 SLNYINLEYNKISK--IHNNLFHFNIHKRLKEIRLSNNYLELIE----SDTFYNLKELNT 343
S+ +L+ + I+ + +KEI LS N + S+ + K+L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
S +K + L +L A + P L + L DN
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGPTA 110
Query: 404 LNVFSNITSKQTPM-NLNLSNNYIT------------NLYENDKKQAPIYIKSLDLSNNR 450
+ SK TP+ +L L NN + L N K + ++S+ NR
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170
Query: 451 IQEVPVNFL-QTFAD--SLRKLYLDFNEI-----KHLDATAFGNLDVLELLSLEHNNI-- 500
++ + +TF L + + N I +HL L++L L+ N
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230
Query: 501 --AVVVKRTFIGMPNLQIIDLSFNEIS------MLTGEQFYFSFKLRILNISHNRL---- 548
+ + PNL+ + L+ +S ++ + L+ L + +N +
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290
Query: 549 -RSLPRDVFSN-TIIEKLDISYNQ 570
R+L + + L+++ N+
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNR 314
Score = 51.3 bits (123), Expect = 4e-07
Identities = 51/286 (17%), Positives = 89/286 (31%), Gaps = 47/286 (16%)
Query: 261 NKNLNTLEWLAMDNNNIKNIRN-------YSLYNLTSLNYINLEYNKISKIHNNLF--HF 311
K+L E+ + +K+ +L L+ + L N
Sbjct: 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118
Query: 312 NIHKRLKEIRLSNNYL-------------ELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
+ H L+ + L NN L EL + N L +I N L++
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178
Query: 359 ----FKNLNNMLNIVLSFNQI-----KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
F++ + + + N I +++ L LDLQDN + +
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238
Query: 410 -ITSKQTPMNLNLSNNYITN-----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFL---- 459
+ S L L++ ++ + + K I +++L L N I+ V L
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298
Query: 460 QTFADSLRKLYLDFNEIKHLDAT------AFGNLDVLELLSLEHNN 499
L L L+ N D F EL L+
Sbjct: 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344
Score = 38.2 bits (89), Expect = 0.006
Identities = 44/352 (12%), Positives = 94/352 (26%), Gaps = 92/352 (26%)
Query: 100 TLDLSHNKLS---VLNMATLYSNVTKLQHL----------GTTILKDREKLLSNLETLLL 146
L + ++ ++ + ++ + L + +LE
Sbjct: 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67
Query: 147 RCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN-- 204
+ + L+ +++A L T+ L N
Sbjct: 68 SDIFTGRVKDEIPEALR-LLLQALLKC--------------PKLHTVRLSDNAFGPTAQE 112
Query: 205 --GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNK 262
+ L+ L L N L I+ +L
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAK-------------IARALQELAVNKKAKNAP 159
Query: 263 NLNTLEWLAMDNNNIKN-----IRNYSLYNLTSLNYINLEYNKI-----SKIHNNLFHFN 312
L + N ++N + + L+ + + N I + +
Sbjct: 160 ---PLRSIICGRNRLENGSMKEWAK-TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215
Query: 313 IHKRLKEIRLSNNYL---------ELIESDTFYNLKELNTITLSYNLL---------KSI 354
LK + L +N ++S NL+EL L+ LL +
Sbjct: 216 QE--LKVLDLQDNTFTHLGSSALAIALKSWP--NLRELG---LNDCLLSARGAAAVVDAF 268
Query: 355 KTTSFKNLNNMLNIVLSFNQI-----KYIYPNAFVNLPNLVKLDLQDNKLKD 401
L + L +N+I + + +P+L+ L+L N+ +
Sbjct: 269 SKLENIGL---QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 57.9 bits (140), Expect = 3e-09
Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 18/223 (8%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
KI ++ F+ NL+ + + + + + + I ++ F
Sbjct: 110 EKIKNIEDAAFKGCDNLKICQIRKKTAPNL----LPEALADSVTAIFIPLGSSDAYRFKN 165
Query: 258 YILN------KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH- 310
+ + L T + + + + IN K+ N F
Sbjct: 166 RWEHFAFIEGEPLETTI----QVGAMGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKL 220
Query: 311 -FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV 369
+ L + +S I TF K L I L +NL K+I F N + +
Sbjct: 221 IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL-KTIGQRVFSNCGRLAGTL 279
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITS 412
+ I AF+ NL + +K+ +F N
Sbjct: 280 ELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322
Score = 32.1 bits (73), Expect = 0.46
Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 16/170 (9%)
Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
N+I ++ N ++ E+ + + + + +
Sbjct: 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLD-----------ISNAEIKMYSGKAGTYPN 73
Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
+ +Y ++ K + ++LS +IK I AF NL +
Sbjct: 74 GKFYIYMANFVPAYAF-SNVVNGVTKGKQTLEKVILS-EKIKNIEDAAFKGCDNLKICQI 131
Query: 395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSL 444
+ + ++ T + + L ++ + A I + L
Sbjct: 132 RKKTAPNLLPEALADSV---TAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 53.9 bits (130), Expect = 1e-08
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 9/143 (6%)
Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
N L + I I N L + I+ N+I K+ F + +RLK + +
Sbjct: 17 NAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG----FPLLRRLKTLLV 71
Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFN---QIKYI 378
+NN + I L +L + L+ N L + +L ++ + + N K+
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131
Query: 379 YPNAFVNLPNLVKLDLQDNKLKD 401
+P + LD Q KLK+
Sbjct: 132 RLYVIYKVPQVRVLDFQKVKLKE 154
Score = 52.7 bits (127), Expect = 3e-08
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE--SDTFYNLKELNTITLSYNLLK 352
L I + + R +E+ L + +IE T ++ S N ++
Sbjct: 3 KLTAELIEQAAQ----YTNAVRDRELDLRGYKIPVIENLGATLDQFDAID---FSDNEIR 55
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNIT 411
+ F L + ++++ N+I I LP+L +L L +N L + L+ +++
Sbjct: 56 KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113
Query: 412 SKQTPMNLNLSNNYITNL 429
S L + N +TN
Sbjct: 114 SLTY---LCILRNPVTNK 128
Score = 49.7 bits (119), Expect = 4e-07
Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 35/152 (23%)
Query: 176 NEDQVSDREKL--LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
+ + + L LR KI + NL L + S N+++ ++
Sbjct: 5 TAELIEQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD----- 58
Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNY 293
FP L L+ L ++NN I I L L
Sbjct: 59 --------------------GFP------LLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92
Query: 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
+ L N + ++ +L K L + + N
Sbjct: 93 LILTNNSLVEL-GDLDPLASLKSLTYLCILRN 123
Score = 44.6 bits (106), Expect = 1e-05
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 14/153 (9%)
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
L+ I+ + N +LDL+ K+ N+ + + ++ S+N I L
Sbjct: 4 LTAELIEQA--AQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDA---IDFSDNEIRKL 57
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL-DATAFGNLD 488
D +K+L ++NNRI + Q L +L L N + L D +L
Sbjct: 58 ---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL-PDLTELILTNNSLVELGDLDPLASLK 113
Query: 489 VLELLSLEHNNIAVVV---KRTFIGMPNLQIID 518
L L + N + +P ++++D
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 43.5 bits (103), Expect = 4e-05
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
+ L+ I++ R+L L +I ++ LD + + N I +
Sbjct: 2 VKLTAELIEQAAQYTNAV---RDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL 57
Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
F + L+ + ++ N I + L L +++N L L
Sbjct: 58 --DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Score = 38.5 bits (90), Expect = 0.002
Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 51/154 (33%)
Query: 75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDR 134
+K+T IE+ + LDL K+ +++LG T
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDR--ELDLRGYKI------------PVIENLGAT----- 40
Query: 135 EKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLL 194
L + + N+I L+G L L+TLL
Sbjct: 41 ---LDQFDAIDFSDNEIRKLDG-----FPL----------------------LRRLKTLL 70
Query: 195 LRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228
+ N+I + L + L +L EL L+ N L +
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104
Score = 37.7 bits (88), Expect = 0.004
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGE 530
L I+ A + N L L I V+ + ID S NEI L G
Sbjct: 4 LTAELIE--QAAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG- 59
Query: 531 QFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
F +L+ L +++NR+ + + + +L ++ N
Sbjct: 60 -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 53.9 bits (130), Expect = 1e-08
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 16/167 (9%)
Query: 275 NNIKNIRNYSLYNLTSLNYINL--EYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
+ I+ T + L I K+ L K K + LS N +E I S
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTL---KACKHLALSTNNIEKISS 65
Query: 333 -DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
NL+ L+ L NL+K I+ + + + +S+NQI + L NL
Sbjct: 66 LSGMENLRILS---LGRNLIKKIENLD-AVADTLEELWISYNQIASLSG--IEKLVNLRV 119
Query: 392 LDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
L + +NK+ ++ ++ + + + L L+ N + N Y+ + +
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLED---LLLAGNPLYNDYKENNATS 163
Score = 53.1 bits (128), Expect = 3e-08
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 35/154 (22%)
Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
+++ L + L L N I ++ + NL+ LSL N ++ IE
Sbjct: 32 GMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIEN-- 87
Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
L+ +TLE L + N I ++ + L +L
Sbjct: 88 ----------------------------LDAVADTLEELWISYNQIASLSG--IEKLVNL 117
Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
+ + NKI+ + +L+++ L+ N
Sbjct: 118 RVLYMSNNKITNW-GEIDKLAALDKLEDLLLAGN 150
Score = 52.4 bits (126), Expect = 5e-08
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
L + LA+ NNI+ I + L + +L ++L N I KI N + L+E+
Sbjct: 45 STLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENL---DAVADTLEELW 99
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFNQIKYIYP 380
+S N + + L L + +S N + + L+ + +++L+ N + Y
Sbjct: 100 ISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157
Query: 381 NA----------FVNLPNLVKLD 393
LPNL KLD
Sbjct: 158 ENNATSEYRIEVVKRLPNLKKLD 180
Score = 46.6 bits (111), Expect = 5e-06
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527
+L+ I+ +DAT L + L+L NNI + + GM NL+I+ L N I +
Sbjct: 29 ELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKI 85
Query: 528 TGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
L L IS+N++ SL + + L +S N+
Sbjct: 86 ENLDAVAD-TLEELWISYNQIASL-SGIEKLVNLRVLYMSNNK 126
Score = 46.2 bits (110), Expect = 7e-06
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN 448
+ K + ++ F S + ++ + L+ I + K L LS
Sbjct: 1 MAKATTIKDAIRIFE-ERKSVVATEAEKVELHGMIPPIEKMDATLSTL--KACKHLALST 57
Query: 449 NRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
N I+++ ++ ++ +LR L L N IK ++ D LE L + +N IA +
Sbjct: 58 NNIEKISSLSGME----NLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASL--SG 110
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQFYFSFK-LRILNISHN 546
+ NL+++ +S N+I+ + L L ++ N
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 45.8 bits (109), Expect = 9e-06
Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 16/140 (11%)
Query: 389 LVKLDLQDNKLK--DFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDL 446
V+L ++ D L+ L LS N I + + ++ L L
Sbjct: 27 KVELHGMIPPIEKMDATLSTLKACKH------LALSTNNIEKI-SSLSGM--ENLRILSL 77
Query: 447 SNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK- 505
N I+++ L AD+L +L++ +N+I L L L +L + +N I +
Sbjct: 78 GRNLIKKI--ENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEI 133
Query: 506 RTFIGMPNLQIIDLSFNEIS 525
+ L+ + L+ N +
Sbjct: 134 DKLAALDKLEDLLLAGNPLY 153
Score = 39.7 bits (93), Expect = 9e-04
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 91 DKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHL--GTTILKDREKL--LSNLETLLL 146
E++ L + M S + +HL T ++ L + NL L L
Sbjct: 20 VVATEAEKVELHGMIPPIE--KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSL 77
Query: 147 RCNKITDLNG--NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN 204
N I + + L++ + + N +S EKL NL L + NKIT+
Sbjct: 78 GRNLIKKIENLDAVADTLEELWI-----SYNQIASLSGIEKL-VNLRVLYMSNNKITNWG 131
Query: 205 G-NLFRHLYNLQELSLSFNKLQ 225
+ L L++L L+ N L
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLY 153
Score = 31.6 bits (72), Expect = 0.49
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 32/143 (22%)
Query: 92 KIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLR 147
KI ++ M L L N + K+++L + + LE L +
Sbjct: 62 KISSLSGMENLRILSLGRNLI------------KKIENL--------DAVADTLEELWIS 101
Query: 148 CNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKL--LSNLETLLLRCNKITDLN 204
N+I L+G +L+ + +NN + +KL L LE LLL N + +
Sbjct: 102 YNQIASLSGIEKLVNLRVLYM-----SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156
Query: 205 GNLFRHLYNLQELSLSFNKLQII 227
E+ L+ +
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKL 179
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 52.8 bits (127), Expect = 3e-08
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 9/148 (6%)
Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
+ N+ + L +DN + + L +L +++L + + N +L
Sbjct: 18 LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN----LPKLPKL 73
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFNQI- 375
K++ LS N + L L + LS N LK I T K L + ++ L ++
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Query: 376 --KYIYPNAFVNLPNLVKLDLQDNKLKD 401
+ F LP L LD D + ++
Sbjct: 134 NLNDYRESVFKLLPQLTYLDGYDREDQE 161
Score = 44.7 bits (106), Expect = 2e-05
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 317 LKEIRLSNNYLELIESDTFY-NLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
++E+ L N + + L ++L L S+ ++ L + + LS N+I
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI 83
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYITNL 429
LPNL L+L NKLKD + L + ++ L+L N +TNL
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS---LDLFNCEVTNL 135
Score = 41.3 bits (97), Expect = 2e-04
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
L L N + + ++ L L N + V + L L+KL L N I
Sbjct: 28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIF 84
Query: 478 HLDATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQIIDLSFNEISMLTG 529
L L L+L N + + + L+ +DL E++ L
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 39.7 bits (93), Expect = 7e-04
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 209 RHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNE-FPYYILNKNLNTL 267
R ++EL L K ++ + F L+ L + S P L L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVSNLP------KLPKL 73
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
+ L + N I + L +L ++NL NK+ I + L + LK + L N
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKSLDLFNC 130
Score = 39.3 bits (92), Expect = 0.001
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 465 SLRKLYLDFNEIKHLDA-TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE 523
++R+L LD + LE LSL + + V +P L+ ++LS N
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR 82
Query: 524 ISMLTGEQFYFSFKLRILNISHNRLRSL 551
I L LN+S N+L+ +
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
Score = 35.9 bits (83), Expect = 0.013
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228
L L+ L L N+I L L NL L+LS NKL+ I
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111
Score = 29.7 bits (67), Expect = 1.5
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 471 LDFNEIKHLDATAFGNLDVLEL-LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTG 529
+D HL+ V EL L +N + T NL+ + L + ++
Sbjct: 8 MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN 66
Query: 530 EQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
KL+ L +S NR+ + + L++S N+
Sbjct: 67 --LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 49.3 bits (118), Expect = 3e-07
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 9/140 (6%)
Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
+ N+ + ++ L +DN+ + L L +++ ++ I N +L
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN----LPKLNKL 66
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFN--- 373
K++ LS+N + L + LS N +K + T K L N+ ++ L
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Query: 374 QIKYIYPNAFVNLPNLVKLD 393
+ N F LP L LD
Sbjct: 127 NLNDYRENVFKLLPQLTYLD 146
Score = 44.7 bits (106), Expect = 1e-05
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 317 LKEIRLSNNYLELIE----SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372
+KE+ L N+ + +D F L+ L+ L SI + LN + + LS
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLS---TINVGLTSI--ANLPKLNKLKKLELSD 73
Query: 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN----LNVFSNITSKQTPMNLNLSNNYITN 428
N++ PNL L+L NK+KD + L N+ S L+L N +TN
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS------LDLFNCEVTN 127
Query: 429 L 429
L
Sbjct: 128 L 128
Score = 44.3 bits (105), Expect = 2e-05
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 7/127 (5%)
Query: 272 MDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE 331
M +RN + ++ L N N+ + + L+ + N L I
Sbjct: 3 MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLT----DEFEELEFLSTINVGLTSIA 58
Query: 332 SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY-PNAFVNLPNLV 390
+ L +L + LS N + + N+ ++ LS N+IK + L NL
Sbjct: 59 N--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116
Query: 391 KLDLQDN 397
LDL +
Sbjct: 117 SLDLFNC 123
Score = 42.4 bits (100), Expect = 7e-05
Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 360 KNLNNMLNIVLSFNQIKYIY-PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN 418
+ +++ +VL ++ L L + L + + +
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKK--- 68
Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIK 477
L LS+N ++ E ++ P + L+LS N+I+++ + L+ ++L+ L L E+
Sbjct: 69 LELSDNRVSGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCEVT 126
Query: 478 HLD 480
+L+
Sbjct: 127 NLN 129
Score = 39.7 bits (93), Expect = 5e-04
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 33/144 (22%)
Query: 183 REKLLSNLETLLLRCNKITDL-NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
R + S+++ L+L ++ + L L+ LS L I KL
Sbjct: 12 RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-------NLPKL- 63
Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
N L+ L + +N + +L ++NL NKI
Sbjct: 64 -----------------------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
Query: 302 SKIHNNLFHFNIHKRLKEIRLSNN 325
+ + + + LK + L N
Sbjct: 101 KDL-STIEPLKKLENLKSLDLFNC 123
Score = 39.7 bits (93), Expect = 6e-04
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 4/112 (3%)
Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
L L N+ ++ L N + + L L+KL L N +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLN-KLKKLELSDNRVSG 78
Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQIIDLSFNEISMLTG 529
L L+L N I + + NL+ +DL E++ L
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 39.3 bits (92), Expect = 8e-04
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 463 ADSLRKLYLDFNEIKHLDATAFG-NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
+++L LD + + LE LS + + + + L+ ++LS
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73
Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSL 551
N +S L LN+S N+++ L
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Score = 38.5 bits (90), Expect = 0.002
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 134 REKLLSNLETLLLRCNKITDL----NGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN 189
R + S+++ L+L ++ + + F L+ N +++ KL +
Sbjct: 12 RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST-----INVGLTSIANLPKL-NK 65
Query: 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228
L+ L L N+++ L NL L+LS NK++ +
Sbjct: 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104
Score = 30.8 bits (70), Expect = 0.58
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 486 NLDVLELLSLEHNNIAVVVKRTFIG-MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544
++ L L+++ L+ + ++ + KL+ L +S
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELS 72
Query: 545 HNRLRSLPRDVFSN-TIIEKLDISYNQ 570
NR+ + + L++S N+
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNK 99
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 51.3 bits (123), Expect = 4e-07
Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
+ ++ ++ Y +L +L KI+K+ + F + ++E+ L L+ I S
Sbjct: 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYA---GIEEVLLPVT-LKEIGSQA 221
Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
F +L TI + N + +I +F+ + + + L N + I AF P L ++
Sbjct: 222 FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTT 278
Query: 395 QDNKLKDFNL-----NVFSNITS 412
+ D
Sbjct: 279 YGSTFNDDPEAMIHPYCLEGCPK 301
Score = 44.3 bits (105), Expect = 7e-05
Identities = 14/111 (12%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
+++ I Y L L + I + L N +++ ++ + N + I
Sbjct: 284 NDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN--RKVTQLTIPAN-VTQINF 339
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
F N + + + + + + + ++ + Y NA
Sbjct: 340 SAFNNTG-IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNAN 389
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 48.8 bits (117), Expect = 5e-07
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 29/112 (25%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
+ + L L N+IT L +F L L L L N+L L + VFD
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--VLPAGVFD------------ 75
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L L L++++N +K+I + NL SL +I L N
Sbjct: 76 ---------------KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 44.5 bits (106), Expect = 1e-05
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + + L +N + +E F L +L + L N L + F L + + L+
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDN 397
NQ+K I AF NL +L + L +N
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 41.8 bits (99), Expect = 1e-04
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
L N + ++ F L + + L NQ+ + F L L +L L DN+LK
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96
Query: 406 VFSNITSKQTPMNLNLSNN 424
F N+ S + L NN
Sbjct: 97 AFDNLKSLTH---IWLLNN 112
Score = 38.0 bits (89), Expect = 0.003
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 27/103 (26%)
Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
+ + L L N+IT L +F L + L L L N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRL-------------------------TQLTRLDLDNN 64
Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
++T L +F L L +LSL+ N+L+ I FD + L
Sbjct: 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIP--RGAFDNLKSLT 105
Score = 37.6 bits (88), Expect = 0.003
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 28/117 (23%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
++D S + VP + + LYL N+I L+ F L L L L++N +
Sbjct: 12 TTVDCSGKSLASVPTGIP----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
V+ F LT +L L+++ N+L+S+PR F N
Sbjct: 68 VLPAGVF----------------DKLT--------QLTQLSLNDNQLKSIPRGAFDN 100
Score = 36.8 bits (86), Expect = 0.007
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK--RLKEIRLS 323
T + L + +N I + LT L ++L+ N+++ + +F K +L ++ L+
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF----DKLTQLTQLSLN 86
Query: 324 NNYLELIESDTFYNLKELNTITLSYN 349
+N L+ I F NLK L I L N
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 36.1 bits (84), Expect = 0.012
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG 127
L + + QI +L G+FD++ + + LDL +N+L+VL A ++ +T+L L
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTR--LDLDNNQLTVLP-AGVFDKLTQLTQLS 84
Score = 34.5 bits (80), Expect = 0.042
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
P + L L +N+I ++ L +L LD N++ L A F L L LSL
Sbjct: 29 PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFN 522
N + + + F + +L I L N
Sbjct: 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 33.4 bits (77), Expect = 0.10
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 56 LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMA 114
+ ++P FD + L L N Q+ LP+G+FDK+ + L L+ N+L S+ A
Sbjct: 42 ITKLEPGVFDRLTQLTRLDL--DNNQLTVLPAGVFDKLTQLT--QLSLNDNQLKSIPRGA 97
Query: 115 TLYSNVTKLQHL 126
+ N+ L H+
Sbjct: 98 --FDNLKSLTHI 107
Score = 28.4 bits (64), Expect = 4.2
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEN--DKKQAPIYIKSLDLSN 448
L L DN++ VF +T L+L NN +T L DK + L L++
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTR---LDLDNNQLTVLPAGVFDK---LTQLTQLSLND 87
Query: 449 NRIQEVP 455
N+++ +P
Sbjct: 88 NQLKSIP 94
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 48.8 bits (117), Expect = 7e-07
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 29/112 (25%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
++ + L L N+IT L +F HL NLQ+L + NKL + + VFD
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--AIPTGVFD------------ 78
Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L L L +++N++K+I + NL SL +I L N
Sbjct: 79 ---------------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 44.6 bits (106), Expect = 2e-05
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
I + + L+NN + +E F +L L + + N L +I T F L + + L+
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDN 397
N +K I AF NL +L + L +N
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 42.2 bits (100), Expect = 1e-04
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
L+ N + ++ F +L N+ + + N++ I F L L +LDL DN LK
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 406 VFSNITSKQTPMNLNLSNN 424
F N+ S + L NN
Sbjct: 100 AFDNLKSLTH---IYLYNN 115
Score = 38.0 bits (89), Expect = 0.003
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 27/103 (26%)
Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
++ + L L N+IT L +F HL NL+ L N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHL-------------------------VNLQQLYFNSN 67
Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
K+T + +F L L +L L+ N L+ I FD + L
Sbjct: 68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSIP--RGAFDNLKSLT 108
Score = 36.8 bits (86), Expect = 0.008
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 28/117 (23%)
Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
++ N R+ VP ++L+L+ N+I L+ F +L L+ L N +
Sbjct: 15 TLVNCQNIRLASVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70
Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
+ F LT +L L+++ N L+S+PR F N
Sbjct: 71 AIPTGVF----------------DKLT--------QLTQLDLNDNHLKSIPRGAFDN 103
Score = 36.5 bits (85), Expect = 0.009
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG--TTILK 132
L + N QI +L G+FD + N++Q L + NKL+ + ++ +T+L L LK
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQ--LYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLK 94
Query: 133 -------DREKLLSNLETLLLR-------CNKITDLNGNLFRHLQKSIVKAKKNNNNNED 178
D L +L + L C I L + H +++ N+ D
Sbjct: 95 SIPRGAFDN---LKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSI-VMRWDGKAVNDPD 150
Query: 179 QV 180
Sbjct: 151 SA 152
Score = 35.7 bits (83), Expect = 0.015
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
+ L ++NN I + +L +L + NK++ I + F+ +L ++ L++N
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV--FDKLTQLTQLDLNDN 91
Query: 326 YLELIESDTFYNLKELNTITLSYN 349
+L+ I F NLK L I L N
Sbjct: 92 HLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 33.0 bits (76), Expect = 0.13
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMATLYSNVTKLQHL 126
L + ++ +P+G+FDK+ + Q LDL+ N L S+ A + N+ L H+
Sbjct: 61 QLYFNSNKLTAIPTGVFDKLTQLTQ--LDLNDNHLKSIPRGA--FDNLKSLTHI 110
Score = 29.9 bits (68), Expect = 1.2
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 418 NLNLSNNYITNLYEN--DKKQAPIYIKSLDLSNNRIQEVPVN-FLQTFADSLRKL---YL 471
L L+NN IT L D ++ L ++N++ +P F D L +L L
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVN---LQQLYFNSNKLTAIPTGVF-----DKLTQLTQLDL 88
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNN 499
+ N +K + AF NL L + L +NN
Sbjct: 89 NDNHLKSIPRGAFDNLKSLTHIYL-YNN 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 48.9 bits (117), Expect = 2e-06
Identities = 39/277 (14%), Positives = 87/277 (31%), Gaps = 47/277 (16%)
Query: 337 NLKELNTITLSYNLL-----KSIKTTSFKNLNNMLNIVLSFNQI-----KYIYPNAFVNL 386
+ L+ LS N L + ++ ++ LS N + +
Sbjct: 23 GVTSLD---LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79
Query: 387 PNLVKLDLQDNKLKDFNLNVFSNI--TSKQTPMNLNLSNNYITN-----LYENDKKQAPI 439
N+ L+L N L + + T L+L N ++ + P
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL-PA 138
Query: 440 YIKSLDLSNNRIQEVPVNF----LQTFADSLRKLYLDFNEIKHLDATAFGNL-----DVL 490
I SL+L N + + L ++ L L N + + +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198
Query: 491 ELLSLEHNNI----AVVVKRTFIGMPN-LQIIDLSFNEISMLTGEQFYFSFK----LRIL 541
L L N + + F +PN + ++L N + + E L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258
Query: 542 NISHNRLRSLPRDVF--------SNTIIEKLDISYNQ 570
+ ++ ++++ ++ + I +D + +
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295
Score = 41.2 bits (97), Expect = 6e-04
Identities = 49/281 (17%), Positives = 102/281 (36%), Gaps = 41/281 (14%)
Query: 260 LNKNLNTLEWLAMDNNNI-----KNIRNYSLYNLTSLNYINLEYNKISKIH-NNLFHF-- 311
+ + L + NN+ + S+ +NL N + + + L
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 312 NIHKRLKEIRLSNNYL-----ELIESDTFYNLKELNTITLSYNLLKSIKTT----SFKNL 362
I + + LS N+L + + + + L +N S ++ +F NL
Sbjct: 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136
Query: 363 N-NMLNIVLSFNQI-----KYIYPNAFVNLP-NLVKLDLQDNKLKDFNLNVFSN--ITSK 413
++ ++ L N + + +P N+ L+L+ N L N + +
Sbjct: 137 PASITSLNLRGNDLGIKSSDELI-QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195
Query: 414 QTPMNLNLSNNYITN----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD---SL 466
+ +L+LS N + P ++ SL+L N + + L+ D L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255
Query: 467 RKLYLDFNEIKHLD-------ATAFGNLDVLELLSLEHNNI 500
+ +YLD++ +K++ AF N+ + L+ I
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Score = 39.7 bits (93), Expect = 0.002
Identities = 49/357 (13%), Positives = 119/357 (33%), Gaps = 64/357 (17%)
Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
+ +L L N + ++ +++A N +++ +L L N
Sbjct: 22 HGVTSLDLSLNNLYSIST-------VELIQAFANTP-------------ASVTSLNLSGN 61
Query: 199 KITDLNGN-----LFRHLYNLQELSLSFNKLQ---IIELNSNVFDVFEKLQLLEISFSLF 250
+ N + L N+ L+LS N L EL + + + +L++ ++ F
Sbjct: 62 SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121
Query: 251 NSNEFPYYI--LNKNLNTLEWLAMDNNNIKNIRNYSL-----YNLTSLNYINLEYNKISK 303
+S + + ++ L + N++ + L ++N +NL N ++
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181
Query: 304 -----IHNNLFHFNIHKRLKEIRLSNNYL-----ELIESDTFYNLKELNTITLSYNLLKS 353
+ L + + LS N L + + ++ L N L
Sbjct: 182 KNCAELAKFLASIP--ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239
Query: 354 ----IKTTSFKNLNNMLNIVLSFNQIKYIYP-------NAFVNLPNLVKLDLQDNKLKDF 402
+L ++ + L ++ +K + AF N+ ++ +D ++
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299
Query: 403 NLNVFSNITSKQ--TPMNLNLSNNYIT----NLYENDKKQAPIYIKSLDLSNNRIQE 453
+ SN+ + +L N + + + P ++ + + E
Sbjct: 300 HSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356
Score = 34.7 bits (80), Expect = 0.068
Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 58/265 (21%)
Query: 100 TLDLSHNKLSVLNMATL-------YSNVTKLQHLGTTILKDR---------EKLLSNLET 143
LDL N S + + +++T L +L L + + +N+ +
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSL-NLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 144 LLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD- 202
L LR N + N + K + +++ +L L N +
Sbjct: 172 LNLRGNNLASKNC-------AELAKFLASIP-------------ASVTSLDLSANLLGLK 211
Query: 203 ----LNGNLFRHLYNLQELSLSFNKL--QIIELNSNVFDVFEKLQLLEISFSLFN--SNE 254
L ++ L+L N L +E + D + LQ + + + + S E
Sbjct: 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271
Query: 255 FPYYILN--KNLNTLEWLAMDNNNIKN---------IRNYSLYNLTSLNYINLEYNKISK 303
+ N+ + + + I IR S + +N K
Sbjct: 272 QCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG-KADVPSLLNQCLIFAQK 330
Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLE 328
N+ NI L+E + L
Sbjct: 331 HQTNIEDLNIPDELRESIQTCKPLL 355
Score = 34.3 bits (79), Expect = 0.089
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 25/160 (15%)
Query: 436 QAPIYIKSLDLSNNRIQEVPV----NFLQTFADSLRKLYLDFNEIKHLDATAFG-----N 486
P + SLDLS N + + S+ L L N + ++
Sbjct: 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78
Query: 487 LDVLELLSLEHNNI----AVVVKRTFIGMP-NLQIIDLSFNEISMLTGEQFYFSFK---- 537
+ L+L N + + + +T +P + ++DL +N+ S + +F +F
Sbjct: 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138
Query: 538 -LRILNISHNRLRSLPRDVFS------NTIIEKLDISYNQ 570
+ LN+ N L D + L++ N
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 46.5 bits (110), Expect = 2e-05
Identities = 70/472 (14%), Positives = 148/472 (31%), Gaps = 83/472 (17%)
Query: 141 LETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKI 200
+ L R + L + + V++ L L+++ R +
Sbjct: 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV 124
Query: 201 TD--LNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY 258
+D L+ +L+ L L S LL I
Sbjct: 125 SDLDLDRLAKARADDLETLKLDK--------CSGFTTDG----LLSIV------------ 160
Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLY----NLTSLNYINLEYNKISKIHNN-LFHFNI 313
+ ++ L M+ ++ L+ + TSL +N + +KI L
Sbjct: 161 ---THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217
Query: 314 H-KRLKEIRLSNNYLELIESDTFY----NLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+ + L +++ + E++E F+ NL+E +L+ ++ K + + +
Sbjct: 218 NCRSLVSVKVGD--FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN 428
LS+ + P F + KLDL L+ + + I L N I +
Sbjct: 276 GLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDH--CTLIQKCPNLEVLETRNV-IGD 331
Query: 429 -----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD-----------SLRKLYLD 472
L + K+ +K L + ++ + + L + +
Sbjct: 332 RGLEVLAQYCKQ-----LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386
Query: 473 FNEIKHLDATAFG----NLDVLELLSLEHNN------IAVVVKRTFIGMPNLQIIDLSFN 522
++I + + G NL L+ L+ + V+ IG L+
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446
Query: 523 EISMLTGEQFYF----SFKLRILNISHNRL--RSLPRDVFSNTIIEKLDISY 568
+ LT + S +R + + + L ++KL++
Sbjct: 447 Q-GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497
Score = 39.5 bits (92), Expect = 0.003
Identities = 55/525 (10%), Positives = 149/525 (28%), Gaps = 66/525 (12%)
Query: 66 NIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQH 125
ID+ + + L + N+ +L L A
Sbjct: 46 KIDSETREHVTMALCYTATPDR-LSRRFPNLR--SLKLKGK----PRAAMFNLIPENWGG 98
Query: 126 LGTTILKDREKLLSNLETLLLRCNKITDLN-GNLFRHLQKSIVKAKKNNNNNEDQVSDR- 183
T + + L L+++ R ++DL+ L + + K + +
Sbjct: 99 YVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC---SGFTTDG 155
Query: 184 ----EKLLSNLETLLLRCNKITDLNG----NLFRHLYNLQELSLSFNKLQIIELNS--NV 233
++TLL+ + ++ +G L +H +L+ L+ + I +
Sbjct: 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215
Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILN--KNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
L +++ + + K + L L
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275
Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL---ELIESDTFYNLKELNTITLSY 348
+ N++ + +++++ L L + L +
Sbjct: 276 GLSYMGPNEMPILFPFA------AQIRKLDLLYALLETEDHCTL--IQKCPNLEVLETRN 327
Query: 349 NL----LKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFV----------NLPNLVKLDL 394
+ L+ + K L L I ++ V L + +
Sbjct: 328 VIGDRGLEVL-AQYCKQLKR-LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385
Query: 395 QDNKLKDFNLNVFSNITSKQTPMNL-NLSN-NYITNLYENDKKQAPI----YIKSLDLSN 448
+ + + +L L L IT+L ++ ++ + ++
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445
Query: 449 N--RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG-NLDVLELLSLEHNNI-AVVV 504
+ ++ ++++ ++ ++R + L + F L+ L + +
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505
Query: 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFY----FSFKLRILNISH 545
+P+L+ + + S +TG+ + + ++
Sbjct: 506 AAAVTKLPSLRYLWVQGYRAS-MTGQDLMQMARPYWNIELIPSRR 549
Score = 36.1 bits (83), Expect = 0.035
Identities = 40/342 (11%), Positives = 93/342 (27%), Gaps = 50/342 (14%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELE-ITGKDLKFID 60
++ + +L + + L+ L D L + L ++
Sbjct: 224 SVKVGD--FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281
Query: 61 PSAFDNI-DACYDLT-LKITNTQIEELPSGLFDKIENIEQM-TLDLSHNKLSVLNMATLY 117
P+ + + L + + I+ + L+ + + + L
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALL--ETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLA 338
Query: 118 SNVTKLQHL-------------GTTILKDR-----EKLLSNLETLLLRCNKITD------ 153
+L+ L ++ R + LE + + + IT+
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398
Query: 154 -LNGNLFRHLQKSIVKAKKNNNNNEDQVSDRE-----KLLSNLETLLL--RCNKITDLN- 204
+ ++ D D L R +TDL
Sbjct: 399 GTYLKNLCDFRLVLL---DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455
Query: 205 GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNL 264
+ ++ N++ + L + L LQ LE+ F+ L
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGL-MEFSRGCPNLQKLEMRGCCFSERAI--AAAVTKL 512
Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
+L +L + ++ L + + Y N+E ++
Sbjct: 513 PSLRYLWVQGYRA-SMTGQDLMQM-ARPYWNIELIPSRRVPE 552
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 43.2 bits (102), Expect = 1e-04
Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 32/179 (17%)
Query: 419 LNLSNNYITN---------LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469
LNL+ +T L + ++L++ ++ + L RKL
Sbjct: 77 LNLAGVRMTPVKCTVVAAVLGSGRHA-----LDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 470 YLDFNEIKHLDATAFG-----NLDVLELLSLEHNNI----AVVVKRTFIGMPNLQIIDLS 520
L N + + + L L +N + V+ G ++ + L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 521 FNEIS----MLTGEQFYFSFKLRILNISHNRL-----RSLPRDVFSNTIIEKLDISYNQ 570
+ L Q + +L+ LN+++N +L R + +E L + +N+
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250
Score = 38.5 bits (90), Expect = 0.004
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 33/165 (20%)
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN---------LYENDK 434
L +++L +L L + + L L N + L +
Sbjct: 98 SGRHALDEVNLASCQLDPAGLRTLLPVFLRAR--KLGLQLNSLGPEACKDLRDLLLHDQC 155
Query: 435 KQAPIYIKSLDLSNNRIQEVPVNFLQTFAD------SLRKLYLDFNEIKHLDATAFGNL- 487
+ I +L LSNN + V + S+ L L +
Sbjct: 156 Q-----ITTLRLSNNPLTAAGV---AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207
Query: 488 ---DVLELLSLEHNNI----AVVVKRTFIGMPNLQIIDLSFNEIS 525
L+ L++ +N A+ + R P+L+++ L FNE+S
Sbjct: 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252
Score = 31.2 bits (71), Expect = 0.85
Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 16/122 (13%)
Query: 465 SLRKLYLDFNEIKHLDATAFG-----NLDVLELLSLEHNNI-AVVVKRTFIGMPNLQIID 518
SLR+L L + + T L+ ++L + ++ + +
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132
Query: 519 LSFNEISMLTGEQFYFSFK-----LRILNISHNRL-----RSLPRDVFSNTIIEKLDISY 568
L N + + + L +S+N L L + NT + L + +
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192
Query: 569 NQ 570
Sbjct: 193 TG 194
Score = 30.5 bits (69), Expect = 1.4
Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 36/140 (25%)
Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQH--LGTTILKDR------EKLLSN---LETLLLRC 148
++L+ +L + TL + + L L + LL + + TL L
Sbjct: 105 EVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSN 164
Query: 149 NKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLF 208
N +T +++ N +++ L L + D L
Sbjct: 165 NPLTAAGV-------AVLMEGLAGN--------------TSVTHLSLLHTGLGDEGLELL 203
Query: 209 ----RHLYNLQELSLSFNKL 224
LQEL++++N
Sbjct: 204 AAQLDRNRQLQELNVAYNGA 223
Score = 29.3 bits (66), Expect = 3.8
Identities = 43/300 (14%), Positives = 91/300 (30%), Gaps = 60/300 (20%)
Query: 288 LTSLNYINLEYNKISKIHNNLFHFNIH---KRLKEIRLSNNYL------ELIESDTFYNL 338
L+SL +NL +++ + + + L E+ L++ L L+
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV-----F 125
Query: 339 KELNTITLSYNLLKSIKTTSFKNLNNMLN--------IVLSFNQI-----KYIYPNAFVN 385
+ L N S+ + K+L ++L + LS N + +
Sbjct: 126 LRARKLGLQLN---SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-EGLAG 181
Query: 386 LPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM-NLNLSNNYITN---------LYENDKK 435
++ L L L D L + + + + LN++ N + E+
Sbjct: 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS- 240
Query: 436 QAPIYIKSLDLSNNRIQEVPVNFL---QTFADSLRKLYLDFNEIKHLDATAFGNLDVLEL 492
++ L L N + L A+ ++ + E + +
Sbjct: 241 -----LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW------SVI 289
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFK----LRILNISHNRL 548
LS N+ + L + DL + + L + + +R L
Sbjct: 290 LSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 41.1 bits (96), Expect = 5e-04
Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 28/171 (16%)
Query: 78 TNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL 137
+ E + K + Q LDL + +A V + L+ E+
Sbjct: 109 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN 168
Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
+ L +L L N++ L+ +S + NL+ L L
Sbjct: 169 IPELLSLNLSNNRLYRLDD-----------------------MSSIVQKAPNLKILNLSG 205
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELN-----SNVFDVFEKLQLL 243
N++ L+EL L N L + S + + F KL L
Sbjct: 206 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256
Score = 33.4 bits (76), Expect = 0.15
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQT 461
L ++ ++ + LN + L ++ + SL+LSNNR+ + ++ +
Sbjct: 136 GLRSDPDLVAQNIDVVLNRRSCMAATL--RIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193
Query: 462 FADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
A +L+ L L NE+K LD ++ L LE
Sbjct: 194 KAPNLKILNLSGNELKSE-----RELDKIKGLKLEE 224
Score = 33.4 bits (76), Expect = 0.17
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
I I S + + E+ ++ + K Y + L V + + + N
Sbjct: 94 IIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153
Query: 499 ---NIAVVVKRTFIGMPNLQIIDLSFNEISMLTG--EQFYFSFKLRILNISHNRLRSL 551
+A ++ +P L ++LS N + L + L+ILN+S N L+S
Sbjct: 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211
Score = 32.7 bits (74), Expect = 0.24
Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 8/168 (4%)
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN 448
L ++ + ++ +++ N ++ + L + L K+ ++LDL
Sbjct: 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKG 136
Query: 449 NRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV--VKR 506
R V Q L + ++ ++ N+ L L+L +N + + +
Sbjct: 137 LRSDPDLV--AQNIDVVLNRRSCMAATLRIIE----ENIPELLSLNLSNNRLYRLDDMSS 190
Query: 507 TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
PNL+I++LS NE+ KL L + N L RD
Sbjct: 191 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRD 238
Score = 31.9 bits (72), Expect = 0.53
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 12/120 (10%)
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
+ + L + ++ LN + L+ I+ +N+ +L++ LS N++
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVV-LNRRSCMAATLRIIE----ENIPELLSLNLSNNRLYR 184
Query: 378 IYPNAFV--NLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYITNLYENDK 434
+ + + PNL L+L N+LK L+ + L L N + + + +
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL----KLEELWLDGNSLCDTFRDQS 240
Score = 28.8 bits (64), Expect = 4.4
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 251 NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH 310
+ N L + +R N+ L +NL N++ ++ +
Sbjct: 133 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE-NIPELLSLNLSNNRLYRLDDMSSI 191
Query: 311 FNIHKRLKEIRLSNNYL---ELIESDTFYNLKELN 342
LK + LS N L ++ L+EL
Sbjct: 192 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 226
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 41.4 bits (97), Expect = 6e-04
Identities = 55/416 (13%), Positives = 136/416 (32%), Gaps = 33/416 (7%)
Query: 140 NLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNK 199
+ T++ R K+ + H + + + LE + L+
Sbjct: 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV 116
Query: 200 ITDLN-GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY- 257
+TD + + N + L LS + + + + L+ L++ S + +
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK---IHNNLFHFNIH 314
+L L + + +L L + NL+ K+++ +
Sbjct: 177 SHFPDTYTSLVSLNISCLA-SEVSFSALERLVT-RCPNLKSLKLNRAVPLEKLATLLQRA 234
Query: 315 KRLKEIRLSNNYLELIE------SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
+L+E+ E+ S KEL ++ ++ + + + + + +
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294
Query: 369 VLSFNQIKYIYPNAFV-NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
LS+ ++ + P L +L + D ++D L V ++ + + S ++
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM 353
Query: 428 NLYENDKKQAPIYI-------KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD 480
+Q + + +S+ ++ + + ++ + L E K D
Sbjct: 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413
Query: 481 ATAFGNLDV-----------LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
LD+ L LSL V + ++++ ++F S
Sbjct: 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS 469
Score = 37.6 bits (87), Expect = 0.010
Identities = 50/419 (11%), Positives = 127/419 (30%), Gaps = 59/419 (14%)
Query: 138 LSNLETL-LLRCNKITDLN----GNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLET 192
N + L L C + R+L++ ++ ++ + +S ++L +
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188
Query: 193 LLLRC--NKITDLN-GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
L + C ++++ L NL+ L L+ +E + + +L+ L
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYT 246
Query: 250 FNSNEFPYYILN---KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
Y L+ L L+ + + + L +NL Y +
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS--Y 304
Query: 307 NLFHFNIH-KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
+L +L+ + + + L + + L+ ++ +
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYI----------EDAGLEVLASTCKDLRELRVFPSEPFVME 354
Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-------------NLNVFSNITS 412
N+ L+ + + + P L + ++ + +
Sbjct: 355 PNVALTEQGLVSV----SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410
Query: 413 KQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLD 472
+ L + + E+ K ++ L LS + + ++ T+A + L +
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKD-----LRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVA 464
Query: 473 FNEI-----KHLDATAFGNLDVLELLSLEH-NNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
F H+ D L L + + + ++ + +S +S
Sbjct: 465 FAGDSDLGMHHV----LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519
Score = 30.6 bits (69), Expect = 1.8
Identities = 63/433 (14%), Positives = 133/433 (30%), Gaps = 79/433 (18%)
Query: 2 TLDLSHNKLSVLNMATLYSNVTKLQHL---GTTILKGDQLQGIFN--SKLRELEITGKDL 56
+ L ++ + + + + L D L I L+EL++ D+
Sbjct: 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV 168
Query: 57 KFIDPSAFDNI-DACYDLT--------LKITNTQIEELPSGLFDKIENIEQMTLDLSHNK 107
+ + D L +++ + +E L + N++ +L L+
Sbjct: 169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC----PNLK--SLKLNRA- 221
Query: 108 LSVLNMATLYSNVTKLQHLGTTILKD--REKLLSNLETLLLRCNKITDLNGNLFRHLQKS 165
+ + +ATL +L+ LGT R + S L L C ++ L+G
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF-------- 273
Query: 166 IVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNG-NLFRHLYNLQELSLSFNKL 224
+ + + S L TL L + + L LQ L + + +
Sbjct: 274 -------WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYI 325
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI-------LNKNLNTLEWLAMDNNNI 277
+ L + + L+ L + S E + ++ LE + +
Sbjct: 326 EDAGLEV-LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384
Query: 278 KNIRNYSLY----NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
N +L N ++ L + + + I
Sbjct: 385 TNA---ALITIARNRPNMTRFRLCIIE-----------PKAPDYLTLEPLDIGFGAIVE- 429
Query: 334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI-----KYIYPNAFVNLPN 388
+ K+L ++LS L + M + ++F ++ +
Sbjct: 430 ---HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV----LSGCDS 482
Query: 389 LVKLDLQDNKLKD 401
L KL+++D D
Sbjct: 483 LRKLEIRDCPFGD 495
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 39.0 bits (91), Expect = 7e-04
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225
+ L+L N +T L L L L+ L N +
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 33.6 bits (77), Expect = 0.044
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 4/51 (7%)
Query: 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
+P F +L L N + L L L L N
Sbjct: 19 GLTWASLPTAFP----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 33.6 bits (77), Expect = 0.059
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 538 LRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
L ++ N L +LP + + + N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 33.2 bits (76), Expect = 0.077
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
L+ N + + P LP L L N
Sbjct: 38 LTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 30.9 bits (70), Expect = 0.45
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106
L +T + LP GL D + + L N
Sbjct: 36 LVLTGNNLTALPPGLLDALPALRT--AHLGAN 65
Score = 29.8 bits (67), Expect = 1.0
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 510 GMP-NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN------RLRSLPRDVFSNT 559
P + + L+ N ++ L LR ++ N RL L +
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRP 84
Score = 29.4 bits (66), Expect = 1.4
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN 474
P+ L L+ N + +P L +LR +L N
Sbjct: 30 PVDTTELVLTGNNLTALPPGLLDAL-PALRTAHLGAN 65
Score = 29.0 bits (65), Expect = 1.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
+ EL L+ N L L + D L+ +
Sbjct: 32 DTTELVLTGNNLT--ALPPGLLDALPALRTAHLG 63
Score = 28.2 bits (63), Expect = 3.3
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
L + NN+ + L L +L +L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 28.2 bits (63), Expect = 3.4
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 385 NLP-NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
P + +L L N L + + + +T +L N
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRT---AHLGAN 65
Score = 27.5 bits (61), Expect = 6.7
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
L L NN+ + +P L+ L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 39.9 bits (92), Expect = 0.002
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 8/131 (6%)
Query: 102 DLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL-LSNLETLLLRCNKITDLNGNLFR 160
L L + + + ++ + + L + EKL L + +
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248
Query: 161 HLQKSIVKAKKNNNNNEDQVSDR---EKLLSNLETLLLRCNKITDLNGNLF----RHLYN 213
++ + ++ V + +L LET+ + +TD L + +
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308
Query: 214 LQELSLSFNKL 224
L+ +++ +N L
Sbjct: 309 LKFINMKYNYL 319
Score = 36.9 bits (84), Expect = 0.015
Identities = 25/153 (16%), Positives = 61/153 (39%), Gaps = 18/153 (11%)
Query: 112 NMATLYSNVTKLQHLG---TTILKDREKLLSNLETLLLRCNKITD-----LNGNLFRHLQ 163
+++ + + L +L T L +K NL++L + + D + G+ +L+
Sbjct: 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222
Query: 164 KSIVKAKKNNNNNEDQVSDREKLLS-----NLETLLLRCNKITDLNGNLF---RHLYNLQ 215
K ++ + + ++ L S NL+ L + + ++ +F L L+
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282
Query: 216 ELSLSFNKL--QIIELNSNVFDVFEKLQLLEIS 246
+ +S L + L + D + L+ + +
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315
Score = 36.1 bits (82), Expect = 0.028
Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 24/175 (13%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL--ELIESDTFYNLKELNTITLSYNL 350
L KI +N LK + + + L ++E +L L + L +
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230
Query: 351 LKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNI 410
+ + PNL L + D + ++ + +F
Sbjct: 231 EDYGFDGDMNVFRPLFSKD---------------RFPNLKWLGIVDAEEQNVVVEMFLES 275
Query: 411 TSKQTPMNLNLSNNYITN-----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQ 460
+++S +T+ L ++ K ++K +++ N + + LQ
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIK--HLKFINMKYNYLSDEMKKELQ 328
Score = 34.5 bits (78), Expect = 0.081
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 385 NLPNLVKLDL---QDNKLKDFNLNVFSNITSKQTPMNL---NLSNNYITNLYENDKKQAP 438
+LPNL KL L ++ D ++NVF + SK NL + + N+ ++
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276
Query: 439 I--YIKSLDLSNNRIQEVPVNFLQTFADS---LRKLYLDFNEI 476
I ++++D+S + + L D L+ + + +N +
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 33.8 bits (76), Expect = 0.17
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 17/124 (13%)
Query: 442 KSLDLSNNRI-QEVPVNFLQTFADSLRKLYLDFNEIKH------------LDATAFGNLD 488
KSL++ + + V + L + +L KL L + F NL
Sbjct: 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255
Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFK----LRILNIS 544
L ++ E N+ V + +P L+ +D+S ++ L+ +N+
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315
Query: 545 HNRL 548
+N L
Sbjct: 316 YNYL 319
Score = 33.0 bits (74), Expect = 0.28
Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 465 SLRKLYLDFNEIKHLDATAFGNLDV---LELLSLEHNNI----AVVVKRTFIGMPNLQII 517
+L+ L + E +++ F D+ LE + + + A ++ + +L+ I
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312
Query: 518 DLSFNEIS 525
++ +N +S
Sbjct: 313 NMKYNYLS 320
Score = 28.0 bits (61), Expect = 8.5
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 21/67 (31%)
Query: 136 KLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLL 195
+L LET+ + +TD L D + +L+ + +
Sbjct: 276 DILPQLETMDISAGVLTDEGARLL---------------------LDHVDKIKHLKFINM 314
Query: 196 RCNKITD 202
+ N ++D
Sbjct: 315 KYNYLSD 321
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.12
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 238 EKLQL--LEISFSLFNSNEFPYYILNKNLNTLE 268
EK L L+ S L+ + P + T+E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKA---TME 47
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 31.4 bits (71), Expect = 0.51
Identities = 20/162 (12%), Positives = 47/162 (29%), Gaps = 32/162 (19%)
Query: 363 NNMLNIVLSFNQIKYIYPNAFVNL-------PNLVKLDLQDNKLKDFNLNVFSN-ITSKQ 414
++ ++ N +K + +L ++ K L + + D I +
Sbjct: 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP 98
Query: 415 TPMNLNLSNNYITN---------LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD- 464
+ LN+ +N++T I N R +
Sbjct: 99 SLRVLNVESNFLTPELLARLLRSTLVTQS------IVEFKADNQRQSVLGNQVEMDMMMA 152
Query: 465 -----SLRKLYLDFNEIKHLDATAFG---NLDVLELLSLEHN 498
SL ++ + F ++ + N + + L L +
Sbjct: 153 IEENESLLRVGISFASMEARHRVSEALERNYERVRLRRLGKD 194
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.54
Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 159 FRHLQKSIVKAKKNNNNNEDQ-VSDRE 184
+ + + K K NN + +
Sbjct: 124 NQRQSEQVEKNKINNRIADKAFYQQPD 150
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 31.8 bits (72), Expect = 0.64
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 19/153 (12%)
Query: 85 LPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHL---GTTILKDREKLLS-- 139
+ L + +DLS++ + V + + S +KLQ+L G + L+
Sbjct: 82 MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141
Query: 140 -NLETLLL-RCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR------EKLLSNLE 191
NL L L C+ ++ + L S + + N + +++ + +
Sbjct: 142 SNLVRLNLSGCSGFSE---FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198
Query: 192 TL-LLRCNK-ITDLN-GNLFRHLYNLQELSLSF 221
L L K + + L R NL L LS
Sbjct: 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231
Score = 30.6 bits (69), Expect = 1.3
Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 17/227 (7%)
Query: 111 LNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCN-KITDLNGNLFRHLQKSIVKA 169
+A+ S L G + D L + + RC D +
Sbjct: 40 YRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 99
Query: 170 KKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLS----FNKLQ 225
N+ + S L+ L L +++D N NL L+LS F++
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159
Query: 226 IIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL 285
+ L S+ +L L +S+ + + + T+ L + KN++ L
Sbjct: 160 LQTLLSS----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDL 214
Query: 286 Y----NLTSLNYINLEYNKISKIHNN-LFHFNIHKRLKEIRLSNNYL 327
+L +++L + + N+ F L+ + LS Y
Sbjct: 215 STLVRRCPNLVHLDLSDS--VMLKNDCFQEFFQLNYLQHLSLSRCYD 259
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 28.3 bits (63), Expect = 4.5
Identities = 15/135 (11%), Positives = 36/135 (26%), Gaps = 39/135 (28%)
Query: 101 LDLSHNKLSVLNMATLYSNVTKLQHL-----------GTTILKDREKLLSNLETLLL-RC 148
+D + + + + + + ++ + L E L ++ + + C
Sbjct: 66 IDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124
Query: 149 NKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR-CNKITDLNGNL 207
+TD L NL+ L L + + +
Sbjct: 125 GNVTD---KGIIALHH----------------------FRNLKYLFLSDLPGVKEKEKIV 159
Query: 208 FRHLYNLQELSLSFN 222
+L L L +
Sbjct: 160 QAFKTSLPSLELKLD 174
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange,
membrane, transport protein; HET: MSE; 1.90A {Vibrio
cholerae} PDB: 3mgl_A*
Length = 130
Score = 26.9 bits (60), Expect = 9.8
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 459 LQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELL--SLEHNNIAVVV 504
+ + ++ + L L + +D T + LE + S I V++
Sbjct: 42 MGSIQETPQILILRLKWVPFMDITG---IQTLEEMIQSFHKRGIKVLI 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.376
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,315,335
Number of extensions: 505367
Number of successful extensions: 10225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 664
Length of query: 584
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 485
Effective length of database: 3,937,614
Effective search space: 1909742790
Effective search space used: 1909742790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)