BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11649
(890 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTL 66
QS+ R + ++G +SVGKS+L +F+E D+ PT+
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTI 37
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTL 66
QS+ R + ++G +SVGKS+L +F+E D+ PT+
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 39
>pdb|2WI8|A Chain A, Crystal Structure Of The Triscatecholate Siderophore
Binding Protein Feua From Bacillus Subtilis
pdb|2WHY|A Chain A, Crystal Structure Of The Triscatecholate Siderophore
Binding Protein Feua From Bacillus Subtilis Complexed
With Ferri-Bacillibactin
pdb|2XUZ|A Chain A, Crystal Structure Of The Triscatecholate Siderophore
Binding Protein Feua From Bacillus Subtilis Complexed
With Ferri-Enterobactin
pdb|2XV1|A Chain A, Crystal Structure Of The Triscatecholate Siderophore
Binding Protein Feua From Bacillus Subtilis Complexed
With Ferric Mecam
Length = 311
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 454 NESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIG 513
NES K + E+ DK T P I I G + ED L+ P I
Sbjct: 5 NESTASKASGTASEKKKIEYLDKTYEVTVPTDKIAITGSVESMEDAKLLDVHPQGAISFS 64
Query: 514 GKY-DLF-----------ENLEPNKKRI 529
GK+ D+F E +EPN ++I
Sbjct: 65 GKFPDMFKDITDKAEPTGEKMEPNIEKI 92
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTL 66
QS+ R + ++G +SVGKS+L +F+E D+ PT+
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 39
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTP 62
LLLIG SVGK++ +FR+ + + TP
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTP 49
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTP 62
LL+IG SVGK++ +FR+ + TP
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTP 50
>pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
pdb|4FQG|B Chain B, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
Length = 190
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 18/185 (9%)
Query: 355 SHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSF 414
SH+ K + S S T + + D H WE GS R E LF+
Sbjct: 1 SHMKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKD--HRWESGSLLEREEKEKLFNEH 58
Query: 415 --SLTAQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT 469
+LT + +LD + L S W E + + + + + S R+K+ FE +
Sbjct: 59 IEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEY-- 116
Query: 470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI 529
RDK + +L K+ + K LI+ L D+ + L+ +K+ +
Sbjct: 117 ---IRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHL------KDVEKILQNDKRYL 167
Query: 530 AVQCL 534
+ C+
Sbjct: 168 VLDCV 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,101,507
Number of Sequences: 62578
Number of extensions: 1176960
Number of successful extensions: 3668
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3659
Number of HSP's gapped (non-prelim): 15
length of query: 890
length of database: 14,973,337
effective HSP length: 107
effective length of query: 783
effective length of database: 8,277,491
effective search space: 6481275453
effective search space used: 6481275453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)