BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11649
(890 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K0T2|DC2L1_MOUSE Cytoplasmic dynein 2 light intermediate chain 1 OS=Mus musculus
GN=Dync2li1 PE=1 SV=1
Length = 351
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 146/241 (60%), Gaps = 14/241 (5%)
Query: 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
E+++ IG+K+ GK+T++ R L+++++ KPTLALEY Y RK+ G KDI H WELG G
Sbjct: 31 EKSVFFIGSKNGGKTTIILRCLDRDESAKPTLALEYTYGRKTKGHNTPKDIAHFWELGGG 90
Query: 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE--------- 144
TS L++ S+ ++ F++VL+LDLS+ N LW+ E L ++ +
Sbjct: 91 TSLLDLISI--PITVDTLRTFSIVLVLDLSKPNDLWSTMENLLQATKSHVDKVIMKLGKT 148
Query: 145 SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
S+++ E R D H D+ LI FP+PL++IG KYD+F++ +P K+++ + LR
Sbjct: 149 SSKASAEMRQRMWSVVQKD-HPDRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLR 207
Query: 205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
++AH GASL+F S + L+ + R ++N AF + ++ D NKP+F+ G DS+
Sbjct: 208 FVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSLCQ 266
Query: 265 I 265
I
Sbjct: 267 I 267
Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 39/230 (16%)
Query: 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAI 450
DI H WELG GTS L++ S+ ++ F++VL+LDLS+ N LW+ E L ++
Sbjct: 80 DIAHFWELGGGTSLLDLISI--PITVDTLRTFSIVLVLDLSKPNDLWSTMENLLQATKSH 137
Query: 451 FE---------SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL 501
+ S+++ E R D H D+ LI FP+PL++IG KYD+F+D
Sbjct: 138 VDKVIMKLGKTSSKASAEMRQRMWSVVQKD-HPDRELIDPFPIPLVIIGSKYDIFQD--- 193
Query: 502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRD 561
+P K+++ + LR++AH GASL+F S + L+ + R
Sbjct: 194 --------------------FDPEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKIRG 232
Query: 562 ILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGR 611
++N AF + ++ D NKP+F+ G DS+ I D+++G+
Sbjct: 233 VINQLAFGIDKSKSICVDQNKPLFITAGLDSLCQIGSPP---VPDSDIGK 279
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 7/172 (4%)
Query: 711 DKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVK 770
D+ LI FP+PL++IG KYD+F++ +P K+++ + LR++AH GASL+F S + L+
Sbjct: 170 DRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLL 228
Query: 771 RTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGT----TQYVTAGSTSSLDK 826
+ R ++N AF + ++ D NKP+F+ G DS+ I + + S ++
Sbjct: 229 KIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSLCQIGSPPVPDSDIGKLQAHSPMEL 288
Query: 827 YKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRR 878
+K ++ F S K+ DPA D Y+E +D +R QK ++L+ +R
Sbjct: 289 WKKVYDKLFPPK--STGTLKAVQDPARDPQYAESEVDEMRVQKDQELEHYKR 338
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 305 RNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFD 364
++ +P K+++ + LR++AH GASL+F S + L+ + R ++N AF + ++ D
Sbjct: 192 QDFDPEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGIDKSKSICVD 250
Query: 365 YNKPIFVPFGTDSVASIEGTTQYVTADICHL 395
NKP+F+ G DS+ I G+ +DI L
Sbjct: 251 QNKPLFITAGLDSLCQI-GSPPVPDSDIGKL 280
>sp|Q32KV4|DC2L1_BOVIN Cytoplasmic dynein 2 light intermediate chain 1 OS=Bos taurus
GN=DYNC2LI1 PE=2 SV=1
Length = 351
Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 156/265 (58%), Gaps = 16/265 (6%)
Query: 12 ELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYI 71
E+A + SSE + E+++ IG+K+ GK+T++ R L++++ PKPTLALEY
Sbjct: 8 EIAKAEVEKRGSSENEGDGAEIGEKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYT 67
Query: 72 YARKS-GKTVMKDICHLWELGSGTSRLEVASL-FSSFSLTAQSGFTLVLMLDLSRLNSLW 129
Y R++ G + KDI H WELG GTS L++ S+ +S +L F++VL+LDLS+ N LW
Sbjct: 68 YGRRTKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTLRT---FSIVLVLDLSKPNDLW 124
Query: 130 TEAETFLAKFRAIFE---------SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180
E L + + ++++ E R D H D+ L+ FP+PL++
Sbjct: 125 PTMENLLQATKLNIDKVIMKLGKKNSKAASEMRQKMWSNMQKD-HPDRELLDPFPIPLVI 183
Query: 181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 240
IG KYD+F++ + K+++ + LR++AH GASL+F S + L+ + R ++N AF +
Sbjct: 184 IGSKYDIFQDFDSEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGIN 242
Query: 241 LASAVNFDYNKPIFVPFGTDSVASI 265
+ ++ D NKP+F+ G DS++ I
Sbjct: 243 KSKSICVDQNKPLFITAGLDSLSQI 267
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 29/230 (12%)
Query: 388 VTADICHLWELGSGTSRLEVASL-FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAK 446
+ DI H WELG GTS L++ S+ +S +L F++VL+LDLS+ N LW E L
Sbjct: 77 IPKDIAHFWELGGGTSLLDLISIPITSDTLRT---FSIVLVLDLSKPNDLWPTMENLL-- 131
Query: 447 FRAIFESNESVREKRGSFEHFRTADEHRDK---GLIRTFPVPLILIGGKYDLFEDKGLIR 503
+A + + V K G ++ + A E R K + + P D+ L+
Sbjct: 132 -QATKLNIDKVIMKLGK-KNSKAASEMRQKMWSNMQKDHP--------------DRELLD 175
Query: 504 TFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDIL 563
FP+PL++IG KYD+F++ + K+++ + LR++AH GASL+F S + L+ + R ++
Sbjct: 176 PFPIPLVIIGSKYDIFQDFDSEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKIRGVI 234
Query: 564 NHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKH 613
N AF + + ++ D NKP+F+ G DS++ I D ++G+ H
Sbjct: 235 NQLAFGINKSKSICVDQNKPLFITAGLDSLSQIGPPP---LPDNDIGKLH 281
Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 7/172 (4%)
Query: 711 DKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVK 770
D+ L+ FP+PL++IG KYD+F++ + K+++ + LR++AH GASL+F S + L+
Sbjct: 170 DRELLDPFPIPLVIIGSKYDIFQDFDSEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLL 228
Query: 771 RTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGT----TQYVTAGSTSSLDK 826
+ R ++N AF + + ++ D NKP+F+ G DS++ I + S +D
Sbjct: 229 KIRGVINQLAFGINKSKSICVDQNKPLFITAGLDSLSQIGPPPLPDNDIGKLHARSPMDL 288
Query: 827 YKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRR 878
+K ++ F S N K DPA D Y+E +D +R QK ++L+Q +R
Sbjct: 289 WKKVYEKLFPPK--SINTLKDVKDPAKDPQYAESEVDEMRIQKDQELEQYKR 338
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 305 RNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFD 364
++ + K+++ + LR++AH GASL+F S + L+ + R ++N AF + + ++ D
Sbjct: 192 QDFDSEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGINKSKSICVD 250
Query: 365 YNKPIFVPFGTDSVASI 381
NKP+F+ G DS++ I
Sbjct: 251 QNKPLFITAGLDSLSQI 267
>sp|Q6AY43|DC2L1_RAT Cytoplasmic dynein 2 light intermediate chain 1 OS=Rattus
norvegicus GN=Dync2li1 PE=1 SV=2
Length = 351
Score = 169 bits (428), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 144/241 (59%), Gaps = 14/241 (5%)
Query: 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
E+++ IG+K+ GK+T++ R L++++ KPTLALEY Y RK+ G KDI H WELG G
Sbjct: 31 EKSVFFIGSKNGGKTTIILRCLDRDEPAKPTLALEYTYGRKTKGHNTPKDIAHFWELGGG 90
Query: 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE--------- 144
TS L++ S+ ++ F++VL+LDLS+ N LW E L ++ +
Sbjct: 91 TSLLDLISI--PITVDTLRTFSIVLVLDLSKPNDLWPTMENLLQATKSHVDKVTMKLGKA 148
Query: 145 SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
++++ E R D H D+ LI FP+PL++IG KYD+F++ +P K+++ + LR
Sbjct: 149 NSKASSEMRQRMWSVMQKD-HPDRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLR 207
Query: 205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
++AH GASL+F S + L+ + R ++N AF + ++ D NKP+F+ G DS+
Sbjct: 208 FVAHYYGASLMFTSKSE-ALLLKMRGVINQLAFGIDKSKSMCVDQNKPLFITAGLDSLCQ 266
Query: 265 I 265
I
Sbjct: 267 I 267
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 27/224 (12%)
Query: 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAI 450
DI H WELG GTS L++ S+ ++ F++VL+LDLS+ N LW E L +A
Sbjct: 80 DIAHFWELGGGTSLLDLISI--PITVDTLRTFSIVLVLDLSKPNDLWPTMENLL---QAT 134
Query: 451 FESNESVREKRGSFEHFRTADEHRDKG---LIRTFPVPLILIGGKYDLFEDKGLIRTFPV 507
+ V K G + + + E R + + + P D+ LI FP+
Sbjct: 135 KSHVDKVTMKLGK-ANSKASSEMRQRMWSVMQKDHP--------------DRELIDPFPI 179
Query: 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567
PL++IG KYD+F++ +P K+++ + LR++AH GASL+F S + L+ + R ++N A
Sbjct: 180 PLVIIGSKYDIFQDFDPEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKMRGVINQLA 238
Query: 568 FSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGR 611
F + ++ D NKP+F+ G DS+ I D+++G+
Sbjct: 239 FGIDKSKSMCVDQNKPLFITAGLDSLCQIGSPP---VPDSDIGK 279
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 711 DKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVK 770
D+ LI FP+PL++IG KYD+F++ +P K+++ + LR++AH GASL+F S + L+
Sbjct: 170 DRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLL 228
Query: 771 RTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGT----TQYVTAGSTSSLDK 826
+ R ++N AF + ++ D NKP+F+ G DS+ I + + S ++
Sbjct: 229 KMRGVINQLAFGIDKSKSMCVDQNKPLFITAGLDSLCQIGSPPVPDSDIGKLQAHSPMEL 288
Query: 827 YKHIFTTHFLQDDPSQNKS--KSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRR 878
+K ++ F P ++ S K+ DPA D Y+E +D +R QK ++L+Q +R
Sbjct: 289 WKKVYEKLF----PPKSTSTLKAIQDPARDPQYAESEVDEMRVQKDQELEQYKR 338
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 305 RNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFD 364
++ +P K+++ + LR++AH GASL+F S + L+ + R ++N AF + ++ D
Sbjct: 192 QDFDPEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKMRGVINQLAFGIDKSKSMCVD 250
Query: 365 YNKPIFVPFGTDSVASIEGTTQYVTADICHL 395
NKP+F+ G DS+ I G+ +DI L
Sbjct: 251 QNKPLFITAGLDSLCQI-GSPPVPDSDIGKL 280
>sp|Q7SXY4|DC2L1_DANRE Cytoplasmic dynein 2 light intermediate chain 1 OS=Danio rerio
GN=dync2li1 PE=2 SV=1
Length = 358
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 151/257 (58%), Gaps = 22/257 (8%)
Query: 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
+RT+ +G+K+ GK+T++ RFLE+++T KPTLALEY + R++ G KDI HLWELG G
Sbjct: 39 QRTVFFMGSKAGGKTTILLRFLERDETAKPTLALEYTFGRRARGHNTPKDIAHLWELGGG 98
Query: 94 TSRLEVASLFSSFSLTAQ--SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE 151
S ++ + +TA S ++VL+LDLS+ N+LW E+ L R E + +
Sbjct: 99 ISLSDLVQI----PITADNVSFLSVVLVLDLSKPNALWETMESLLGSARNQVEKVCAALQ 154
Query: 152 KRGSFEHFRTA------DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY 205
K G + ++ D+ LI FPVPL+++G K+D+F++ + K+++ + LR+
Sbjct: 155 KTGESRSGKQRVPRVLHKDYPDRELISPFPVPLLIVGSKFDIFQDFDSEKRKVICKTLRF 214
Query: 206 LAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI 265
LAH GASL+F SS + ++R +N AF + +++ D +KP+ +P G+DS++ I
Sbjct: 215 LAHFYGASLIFTSSKSETTMSKSRSFINQLAFGTERPKSISTDPSKPLAIPAGSDSLSQI 274
Query: 266 E---------GTTHGKD 273
GT H K+
Sbjct: 275 GPPVATEVDIGTLHAKN 291
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 709 FEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGL 768
+ D+ LI FPVPL+++G K+D+F++ + K+++ + LR+LAH GASL+F SS
Sbjct: 174 YPDRELISPFPVPLLIVGSKFDIFQDFDSEKRKVICKTLRFLAHFYGASLIFTSSKSETT 233
Query: 769 VKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI----EGTTQYVTAGSTSSL 824
+ ++R +N AF + +++ D +KP+ +P G+DS++ I T + +
Sbjct: 234 MSKSRSFINQLAFGTERPKSISTDPSKPLAIPAGSDSLSQIGPPVATEVDIGTLHAKNPF 293
Query: 825 DKYKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRRE 879
D +K +F F + S + K DP D +SEP+IDS+R QK ++LDQ +RE
Sbjct: 294 DLWKKVFEKVFPHE--STRERKELKDPVKDPQFSEPLIDSIRAQKDQELDQYKRE 346
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 26/225 (11%)
Query: 391 DICHLWELGSGTSRLEVASLFSSFSLTAQ--SGFTLVLMLDLSRLNSLWTEAETFLAKFR 448
DI HLWELG G S ++ + +TA S ++VL+LDLS+ N+LW E+ L R
Sbjct: 88 DIAHLWELGGGISLSDLVQI----PITADNVSFLSVVLVLDLSKPNALWETMESLLGSAR 143
Query: 449 AIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVP 508
E + +K G R+ + + L + +P D+ LI FPVP
Sbjct: 144 NQVEKVCAALQKTG---ESRSGKQRVPRVLHKDYP--------------DRELISPFPVP 186
Query: 509 LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 568
L+++G K+D+F++ + K+++ + LR+LAH GASL+F SS + ++R +N AF
Sbjct: 187 LLIVGSKFDIFQDFDSEKRKVICKTLRFLAHFYGASLIFTSSKSETTMSKSRSFINQLAF 246
Query: 569 SSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKH 613
+ +++ D +KP+ +P G+DS++ I V + ++G H
Sbjct: 247 GTERPKSISTDPSKPLAIPAGSDSLSQIGPP---VATEVDIGTLH 288
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 305 RNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFD 364
++ + K+++ + LR+LAH GASL+F SS + ++R +N AF + +++ D
Sbjct: 198 QDFDSEKRKVICKTLRFLAHFYGASLIFTSSKSETTMSKSRSFINQLAFGTERPKSISTD 257
Query: 365 YNKPIFVPFGTDSVASIEGTTQYVTADICHL 395
+KP+ +P G+DS++ I G DI L
Sbjct: 258 PSKPLAIPAGSDSLSQI-GPPVATEVDIGTL 287
>sp|Q8TCX1|DC2L1_HUMAN Cytoplasmic dynein 2 light intermediate chain 1 OS=Homo sapiens
GN=DYNC2LI1 PE=1 SV=1
Length = 351
Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 141/241 (58%), Gaps = 14/241 (5%)
Query: 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
E+ + IG+K+ GK+T++ R L++++ PKPTLALEY Y R++ G KDI H WELG G
Sbjct: 31 EKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHFWELGGG 90
Query: 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE--------- 144
TS L++ S+ + F+LVL+LDLS+ N LW E L ++ +
Sbjct: 91 TSLLDLISI--PITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKVIMKLGKT 148
Query: 145 SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
+ ++V E R + D H D LI FPVPL++IG KYD+F++ E K+++ + LR
Sbjct: 149 NAKAVSEMRQKIWNNMPKD-HPDHELIDPFPVPLVIIGSKYDVFQDFESEKRKVICKTLR 207
Query: 205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
++AH GASL+F S + L+ + R ++N AF + ++ D NKP+F+ G DS
Sbjct: 208 FVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQ 266
Query: 265 I 265
I
Sbjct: 267 I 267
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 27/226 (11%)
Query: 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAI 450
DI H WELG GTS L++ S+ + F+LVL+LDLS+ N LW E L +A
Sbjct: 80 DIAHFWELGGGTSLLDLISI--PITGDTLRTFSLVLVLDLSKPNDLWPTMENLL---QAT 134
Query: 451 FESNESVREKRGSFEHFRTADEHRDK---GLIRTFPVPLILIGGKYDLFEDKGLIRTFPV 507
+ V K G + + E R K + + P D LI FPV
Sbjct: 135 KSHVDKVIMKLGK-TNAKAVSEMRQKIWNNMPKDHP--------------DHELIDPFPV 179
Query: 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567
PL++IG KYD+F++ E K+++ + LR++AH GASL+F S + L+ + R ++N A
Sbjct: 180 PLVIIGSKYDVFQDFESEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKIRGVINQLA 238
Query: 568 FSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKH 613
F + ++ D NKP+F+ G DS I + ++G+ H
Sbjct: 239 FGIDKSKSICVDQNKPLFITAGLDSFGQIGSPP---VPENDIGKLH 281
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 11/174 (6%)
Query: 711 DKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVK 770
D LI FPVPL++IG KYD+F++ E K+++ + LR++AH GASL+F S + L+
Sbjct: 170 DHELIDPFPVPLVIIGSKYDVFQDFESEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLL 228
Query: 771 RTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI------EGTTQYVTAGSTSSL 824
+ R ++N AF + ++ D NKP+F+ G DS I E + A S L
Sbjct: 229 KIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQIGSPPVPENDIGKLHAHSPMEL 288
Query: 825 DKYKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRR 878
+K ++ F S N K DPA D Y+E +D +R QK +L+Q +R
Sbjct: 289 --WKKVYEKLFPPK--SINTLKDIKDPARDPQYAENEVDEMRIQKDLELEQYKR 338
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 305 RNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFD 364
++ E K+++ + LR++AH GASL+F S + L+ + R ++N AF + ++ D
Sbjct: 192 QDFESEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGIDKSKSICVD 250
Query: 365 YNKPIFVPFGTDSVASIEGTTQYVTADICHL 395
NKP+F+ G DS I G+ DI L
Sbjct: 251 QNKPLFITAGLDSFGQI-GSPPVPENDIGKL 280
>sp|Q7XA07|DC2L1_CHLRE Cytoplasmic dynein 2 light intermediate chain 1 OS=Chlamydomonas
reinhardtii GN=D1BLIC PE=1 SV=1
Length = 427
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 124/272 (45%), Gaps = 44/272 (16%)
Query: 40 LIGTKSVGKSTLVFRFL--EKNDTPKPTLALEYIYARKSGK--TVMKDICHLWELGSGTS 95
+G+++ GKSTL+ RFL + + PKP+ +EY YARK KD+ H+WE+G
Sbjct: 45 FVGSRAAGKSTLLNRFLYPTRAEVPKPSEGIEYTYARKPAAFDHEKKDLAHIWEVGGSQE 104
Query: 96 RLEVASLFSSFSLTAQSGFTLVLML--DLSR----LNSLWTEAETFLAKFRAIFES---- 145
E LTA+ T V+++ DLS L +L E K + +E
Sbjct: 105 FAEEIVNSDQLFLTAKQVTTAVVVIVVDLSDPAGVLPTLLYWVEQVKKKLGSTYEKFEKK 164
Query: 146 ----NESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQ 201
E +R++ S +A+E DK + + L++ KYD F+N +P K++ +
Sbjct: 165 GLQLPEQLRQRAKS--KLYSANE--DKDTVYHSGISLVIAATKYDAFKNQDPEVKKVMSR 220
Query: 202 CLRYLAHVNGASLLFHSSL----------DPGLVKRTRDILNHYAFSSHLASAV-----N 246
LRY+AH +GA L + S L D L+ ++NH F+ V
Sbjct: 221 VLRYIAHAHGAFLCYLSGLHGASEGSGAEDAALLDNFTRLMNHLIFTGLEKKPVLKMQPQ 280
Query: 247 FDYNKPIFVPFGTDSVASI-------EGTTHG 271
D+ PI VP G D+ S+ EGT G
Sbjct: 281 IDHTGPIMVPAGFDTFKSVGRPRSQGEGTVAG 312
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 18/189 (9%)
Query: 706 YDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL- 764
Y EDK + + L++ KYD F+N +P K++ + LRY+AH +GA L + S L
Sbjct: 181 YSANEDKDTVYHSGISLVIAATKYDAFKNQDPEVKKVMSRVLRYIAHAHGAFLCYLSGLH 240
Query: 765 ---------DPGLVKRTRDILNHYAFSSHLASAV-----NFDYNKPIFVPFGTDSVASIE 810
D L+ ++NH F+ V D+ PI VP G D+ S+
Sbjct: 241 GASEGSGAEDAALLDNFTRLMNHLIFTGLEKKPVLKMQPQIDHTGPIMVPAGFDTFKSVG 300
Query: 811 GTTQYVTAGSTSSLDKYKHIFTTHF--LQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQ 868
L +++ +F F +++ ++ +K A + + Y E +D++R +
Sbjct: 301 RPRSQGEGTVAGGLAEWRELFEKMFPGVREKEAKMSAKGA-KFVIPEQYKEEEVDAVRQR 359
Query: 869 KLEQLDQMR 877
K+ L+ R
Sbjct: 360 KVTDLENFR 368
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 493 YDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL- 551
Y EDK + + L++ KYD F+N +P K++ + LRY+AH +GA L + S L
Sbjct: 181 YSANEDKDTVYHSGISLVIAATKYDAFKNQDPEVKKVMSRVLRYIAHAHGAFLCYLSGLH 240
Query: 552 ---------DPGLVKRTRDILNHYAFSSHLASAV-----NFDYNKPIFVPFGTDSVASI 596
D L+ ++NH F+ V D+ PI VP G D+ S+
Sbjct: 241 GASEGSGAEDAALLDNFTRLMNHLIFTGLEKKPVLKMQPQIDHTGPIMVPAGFDTFKSV 299
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Query: 305 RNLEPNKKRIAVQCLRYLAHVNGASLLFHSSL----------DPGLVKRTRDILNHYAFS 354
+N +P K++ + LRY+AH +GA L + S L D L+ ++NH F+
Sbjct: 208 KNQDPEVKKVMSRVLRYIAHAHGAFLCYLSGLHGASEGSGAEDAALLDNFTRLMNHLIFT 267
Query: 355 SHLASAV-----NFDYNKPIFVPFGTDSVASI-------EGTTQYVTADICHLWE 397
V D+ PI VP G D+ S+ EGT A+ L+E
Sbjct: 268 GLEKKPVLKMQPQIDHTGPIMVPAGFDTFKSVGRPRSQGEGTVAGGLAEWRELFE 322
>sp|Q1QD14|DER_PSYCK GTPase Der OS=Psychrobacter cryohalolentis (strain K5) GN=der PE=3
SV=1
Length = 480
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 25 EVHKIDIQSQERT-------LLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYI- 71
EV D+ SQE L +IG +VGKSTLV R L ++ D P T YI
Sbjct: 160 EVLTADMPSQENVVEPRGLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIP 219
Query: 72 YARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLM 119
Y R+ V+ D + G ++E S+ + S T++++
Sbjct: 220 YTREGKDYVLIDTAGVRRRGKIDEKVEKFSVIKTLQAIEDSNVTVIVI 267
>sp|Q9D9R3|SPAT9_MOUSE Spermatogenesis-associated protein 9 OS=Mus musculus GN=Spata9 PE=2
SV=1
Length = 252
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGS 155
+++ SLF S A++ T ++ + L L LAK + IF+ ES+R+ R S
Sbjct: 126 QMKRGSLFEIISFPAKTALTSIMYASYAALIYLAVCVNAVLAKIKKIFQEEESIRQNRES 185
Query: 156 FEHFRTA 162
E+FR A
Sbjct: 186 -ENFRKA 191
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 404 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGS 463
+++ SLF S A++ T ++ + L L LAK + IF+ ES+R+ R S
Sbjct: 126 QMKRGSLFEIISFPAKTALTSIMYASYAALIYLAVCVNAVLAKIKKIFQEEESIRQNRES 185
Query: 464 FEHFRTA 470
E+FR A
Sbjct: 186 -ENFRKA 191
>sp|Q4FTW3|DER_PSYA2 GTPase Der OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
GN=der PE=3 SV=1
Length = 473
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 25 EVHKIDIQSQERT-------LLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIY 72
EV D+ +QE L +IG +VGKSTLV R L ++ D P T YI
Sbjct: 160 EVLTADMPNQENIIEPRGLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIP 219
Query: 73 ARKSGKT-VMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLM 119
++ GK V+ D + G ++E S+ + S T++++
Sbjct: 220 YKRDGKDYVLIDTAGVRRRGKIDEKVEKFSVIKTLQAIEDSNVTVIVI 267
>sp|Q3T021|SPAT9_BOVIN Spermatogenesis-associated protein 9 OS=Bos taurus GN=SPATA9 PE=2
SV=1
Length = 253
Score = 36.2 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 100 ASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF 159
SLF S A++ T ++ + L L L K IF+ ES+R+ R E+F
Sbjct: 130 GSLFEIISFPAKTALTSIMCASYAALIYLTVCVNAVLEKIMKIFQEEESIRQNREESENF 189
Query: 160 RTA 162
R A
Sbjct: 190 RNA 192
Score = 36.2 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 408 ASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF 467
SLF S A++ T ++ + L L L K IF+ ES+R+ R E+F
Sbjct: 130 GSLFEIISFPAKTALTSIMCASYAALIYLTVCVNAVLEKIMKIFQEEESIRQNREESENF 189
Query: 468 RTA 470
R A
Sbjct: 190 RNA 192
>sp|Q04458|HFD1_YEAST Fatty aldehyde dehydrogenase HFD1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HFD1 PE=1 SV=1
Length = 532
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 43/203 (21%)
Query: 487 ILIGGKYDLFEDKGLIRTFPV----------PLIL-IGGKYDLF--ENLEPNKKRIAVQC 533
+L GK+DL G R + P +L +GGK F EN + + +IA++
Sbjct: 201 LLDCGKFDLIFYTGSPRVGSIVAEKAAKSLTPCVLELGGKSPTFITENFKASNIKIALKR 260
Query: 534 LRYLAHVNGAS-------LLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFV 586
+ + A N LL H S+ P ++K +LN + S + D+ + I
Sbjct: 261 IFFGAFGNSGQICVSPDYLLVHKSIYPKVIKECESVLNEFYPSFDEQT----DFTRMIHE 316
Query: 587 PFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKLGLHNTHH 646
P +VASI T G K + +K S NS + L +V P + ++
Sbjct: 317 PAYKKAVASINSTN---------GSKIVPSKISINS-----DTEDLCLVPPTI----VYN 358
Query: 647 ICYDHPCNKHVENQGWIIKILKW 669
I +D P K EN ++ I+++
Sbjct: 359 IGWDDPLMKQ-ENFAPVLPIIEY 380
>sp|P61208|ARL4C_MOUSE ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c
PE=2 SV=1
Length = 192
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 34 QERTLLLIGTKSVGKSTLVFR--FLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELG 91
Q ++++G S GK+T+++R F E +T PT+ + S T CH W++G
Sbjct: 12 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTV-PTIGFNTEKIKLSNGTAKGISCHFWDVG 70
Query: 92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTE 131
G +L L+ S+S +V +D+ RL TE
Sbjct: 71 -GQEKLR--PLWKSYSRCTDGIIYVVDSVDVDRLEEAKTE 107
>sp|P56559|ARL4C_HUMAN ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C
PE=1 SV=1
Length = 192
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 34 QERTLLLIGTKSVGKSTLVFR--FLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELG 91
Q ++++G S GK+T+++R F E +T PT+ + S T CH W++G
Sbjct: 12 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTV-PTIGFNTEKIKLSNGTAKGISCHFWDVG 70
Query: 92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTE 131
G +L L+ S+S +V +D+ RL TE
Sbjct: 71 -GQEKLR--PLWKSYSRCTDGIIYVVDSVDVDRLEEAKTE 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 335,721,472
Number of Sequences: 539616
Number of extensions: 14677947
Number of successful extensions: 35481
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 35386
Number of HSP's gapped (non-prelim): 47
length of query: 890
length of database: 191,569,459
effective HSP length: 127
effective length of query: 763
effective length of database: 123,038,227
effective search space: 93878167201
effective search space used: 93878167201
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)