Query psy11649
Match_columns 890
No_of_seqs 499 out of 2146
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 15:25:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3929|consensus 100.0 9.2E-65 2E-69 522.0 11.1 275 385-889 86-361 (363)
2 KOG3905|consensus 100.0 7.1E-60 1.5E-64 498.3 15.8 250 333-608 61-329 (473)
3 PF05783 DLIC: Dynein light in 100.0 2.6E-49 5.5E-54 452.9 17.1 204 389-598 71-294 (472)
4 PF05783 DLIC: Dynein light in 100.0 1.2E-30 2.7E-35 299.3 20.8 252 3-268 3-295 (472)
5 KOG3905|consensus 100.0 1.8E-30 4E-35 275.6 19.6 251 4-268 31-321 (473)
6 KOG3929|consensus 100.0 6.7E-30 1.5E-34 264.5 4.8 270 4-282 13-293 (363)
7 KOG0084|consensus 99.9 1.6E-27 3.5E-32 239.9 15.9 163 33-238 7-173 (205)
8 KOG0078|consensus 99.9 8.4E-26 1.8E-30 230.4 17.2 165 32-238 9-175 (207)
9 KOG0094|consensus 99.9 2.8E-25 6.1E-30 222.9 17.4 168 32-240 19-188 (221)
10 KOG0092|consensus 99.9 1.5E-25 3.2E-30 225.0 15.4 164 33-239 3-169 (200)
11 KOG0098|consensus 99.9 6.9E-25 1.5E-29 218.5 15.4 163 34-238 5-169 (216)
12 KOG1673|consensus 99.9 2.4E-25 5.1E-30 215.4 11.7 134 393-586 71-204 (205)
13 KOG0394|consensus 99.9 9.4E-25 2E-29 217.3 14.3 172 32-240 6-181 (210)
14 KOG0079|consensus 99.9 7.8E-25 1.7E-29 210.3 10.9 164 34-240 7-172 (198)
15 KOG0087|consensus 99.9 1.9E-24 4.1E-29 219.7 13.9 167 32-241 11-180 (222)
16 cd04121 Rab40 Rab40 subfamily. 99.9 2.7E-23 5.8E-28 213.7 18.8 162 34-238 5-168 (189)
17 cd04128 Spg1 Spg1p. Spg1p (se 99.9 6.7E-23 1.4E-27 209.0 20.3 168 36-241 1-170 (182)
18 cd04120 Rab12 Rab12 subfamily. 99.9 5.1E-23 1.1E-27 213.9 19.2 160 37-238 2-164 (202)
19 cd04133 Rop_like Rop subfamily 99.9 6.2E-23 1.3E-27 208.7 17.7 162 36-236 2-172 (176)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 7.5E-23 1.6E-27 209.1 18.1 164 34-236 4-179 (182)
21 KOG0093|consensus 99.9 2.1E-23 4.6E-28 200.4 12.5 163 33-237 19-183 (193)
22 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.1E-22 4.5E-27 207.7 20.4 166 36-238 1-169 (201)
23 cd04109 Rab28 Rab28 subfamily. 99.9 1.9E-22 4.1E-27 210.5 20.2 166 36-239 1-168 (215)
24 COG0370 FeoB Fe2+ transport sy 99.9 2.7E-23 5.8E-28 241.9 14.3 261 34-360 2-280 (653)
25 KOG0091|consensus 99.9 3.8E-23 8.1E-28 201.8 13.0 166 34-239 7-175 (213)
26 cd04131 Rnd Rnd subfamily. Th 99.9 1.6E-22 3.5E-27 205.6 17.4 162 36-236 2-175 (178)
27 KOG0095|consensus 99.9 9.5E-23 2.1E-27 196.1 14.0 162 35-238 7-170 (213)
28 cd04127 Rab27A Rab27a subfamil 99.9 4.5E-22 9.8E-27 200.0 19.7 164 34-237 3-177 (180)
29 cd01875 RhoG RhoG subfamily. 99.9 3.1E-22 6.8E-27 205.2 18.4 166 34-238 2-178 (191)
30 cd04122 Rab14 Rab14 subfamily. 99.9 5.4E-22 1.2E-26 197.3 19.2 161 35-237 2-164 (166)
31 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4E-22 8.7E-27 211.3 18.7 167 33-238 11-189 (232)
32 KOG0080|consensus 99.9 2.3E-22 5.1E-27 195.8 14.9 168 32-240 8-177 (209)
33 cd01865 Rab3 Rab3 subfamily. 99.9 1E-21 2.2E-26 195.4 19.3 160 36-237 2-163 (165)
34 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 9.5E-22 2.1E-26 198.2 19.1 161 35-237 2-164 (172)
35 cd04119 RJL RJL (RabJ-Like) su 99.9 1.3E-21 2.8E-26 192.5 19.0 165 36-237 1-167 (168)
36 KOG0086|consensus 99.9 3.4E-22 7.4E-27 193.0 14.0 161 33-236 7-170 (214)
37 cd01867 Rab8_Rab10_Rab13_like 99.9 1.4E-21 3E-26 194.8 18.9 161 35-237 3-165 (167)
38 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.5E-21 3.3E-26 193.6 19.1 161 35-237 2-164 (166)
39 cd04106 Rab23_lke Rab23-like s 99.9 1.3E-21 2.9E-26 192.5 18.4 157 36-234 1-160 (162)
40 cd04117 Rab15 Rab15 subfamily. 99.9 1.6E-21 3.4E-26 193.9 18.7 158 36-235 1-160 (161)
41 cd04111 Rab39 Rab39 subfamily. 99.9 2.8E-21 6.1E-26 201.7 19.9 164 35-238 2-167 (211)
42 cd04136 Rap_like Rap-like subf 99.9 2.3E-21 4.9E-26 190.7 18.2 160 35-236 1-162 (163)
43 PF00071 Ras: Ras family; Int 99.9 2.9E-21 6.3E-26 190.3 18.4 158 37-236 1-160 (162)
44 cd04175 Rap1 Rap1 subgroup. T 99.9 3E-21 6.4E-26 191.2 18.6 160 35-236 1-162 (164)
45 COG1163 DRG Predicted GTPase [ 99.9 3.3E-22 7.1E-27 214.7 12.3 239 26-301 54-341 (365)
46 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 4.3E-21 9.3E-26 193.1 19.8 164 37-239 2-167 (170)
47 cd04112 Rab26 Rab26 subfamily. 99.9 3.5E-21 7.5E-26 197.0 19.2 162 36-239 1-165 (191)
48 cd01868 Rab11_like Rab11-like. 99.9 3.7E-21 8.1E-26 190.4 18.9 160 35-236 3-164 (165)
49 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.2E-21 9.2E-26 187.7 19.0 159 35-236 1-161 (162)
50 cd04116 Rab9 Rab9 subfamily. 99.9 5.1E-21 1.1E-25 190.6 19.5 164 33-235 3-169 (170)
51 cd04126 Rab20 Rab20 subfamily. 99.9 3.4E-21 7.4E-26 202.8 19.1 164 36-240 1-193 (220)
52 cd01874 Cdc42 Cdc42 subfamily. 99.9 3.5E-21 7.6E-26 194.8 18.0 162 36-236 2-174 (175)
53 cd04140 ARHI_like ARHI subfami 99.9 5.5E-21 1.2E-25 190.1 19.1 160 36-235 2-163 (165)
54 PLN03071 GTP-binding nuclear p 99.9 5.2E-21 1.1E-25 200.9 18.9 161 33-238 11-173 (219)
55 KOG0088|consensus 99.9 4.3E-22 9.3E-27 193.4 9.7 167 32-239 10-177 (218)
56 KOG0083|consensus 99.9 1.4E-22 3.1E-27 191.7 6.2 158 39-238 1-161 (192)
57 cd04176 Rap2 Rap2 subgroup. T 99.9 7.5E-21 1.6E-25 187.8 18.5 159 35-235 1-161 (163)
58 cd04110 Rab35 Rab35 subfamily. 99.9 8.6E-21 1.9E-25 195.7 19.6 162 34-238 5-168 (199)
59 cd01866 Rab2 Rab2 subfamily. 99.9 1.1E-20 2.4E-25 188.6 19.3 161 35-237 4-166 (168)
60 PLN03110 Rab GTPase; Provision 99.9 9.2E-21 2E-25 198.4 19.4 163 34-238 11-175 (216)
61 cd01864 Rab19 Rab19 subfamily. 99.9 9.8E-21 2.1E-25 187.9 18.6 159 35-235 3-164 (165)
62 smart00173 RAS Ras subfamily o 99.9 1.1E-20 2.4E-25 186.6 18.7 159 36-236 1-161 (164)
63 cd04125 RabA_like RabA-like su 99.9 1.2E-20 2.5E-25 192.2 19.3 161 36-238 1-163 (188)
64 cd04144 Ras2 Ras2 subfamily. 99.9 8.1E-21 1.7E-25 194.2 17.8 161 37-237 1-163 (190)
65 PTZ00369 Ras-like protein; Pro 99.9 1.3E-20 2.8E-25 192.5 19.2 164 33-238 3-168 (189)
66 cd00877 Ran Ran (Ras-related n 99.9 1E-20 2.2E-25 189.4 18.0 158 36-238 1-160 (166)
67 cd01873 RhoBTB RhoBTB subfamil 99.9 7.8E-21 1.7E-25 196.3 17.4 161 35-234 2-193 (195)
68 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2E-20 4.3E-25 184.2 19.4 159 35-235 2-162 (164)
69 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.6E-20 3.5E-25 185.4 18.5 159 36-236 1-163 (164)
70 cd01871 Rac1_like Rac1-like su 99.9 1.3E-20 2.8E-25 190.5 18.1 160 36-234 2-172 (174)
71 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.6E-20 3.4E-25 198.0 19.1 163 36-237 2-176 (222)
72 cd04134 Rho3 Rho3 subfamily. 99.9 1.3E-20 2.8E-25 192.7 17.7 164 36-238 1-175 (189)
73 cd04113 Rab4 Rab4 subfamily. 99.8 2.9E-20 6.2E-25 183.3 18.3 158 36-235 1-160 (161)
74 cd01861 Rab6 Rab6 subfamily. 99.8 3.6E-20 7.8E-25 182.1 18.5 158 36-235 1-160 (161)
75 smart00175 RAB Rab subfamily o 99.8 4.3E-20 9.4E-25 181.5 18.9 160 36-237 1-162 (164)
76 KOG0081|consensus 99.8 1.1E-21 2.3E-26 190.8 7.2 165 34-238 8-182 (219)
77 cd04124 RabL2 RabL2 subfamily. 99.8 5.1E-20 1.1E-24 182.8 19.5 155 36-237 1-158 (161)
78 smart00176 RAN Ran (Ras-relate 99.8 2.1E-20 4.7E-25 194.0 17.3 153 41-238 1-155 (200)
79 cd04118 Rab24 Rab24 subfamily. 99.8 4.6E-20 1E-24 188.1 19.0 164 36-238 1-167 (193)
80 PRK09554 feoB ferrous iron tra 99.8 7.6E-21 1.6E-25 231.0 14.9 271 34-360 2-290 (772)
81 cd04115 Rab33B_Rab33A Rab33B/R 99.8 7.7E-20 1.7E-24 183.0 19.5 161 35-236 2-168 (170)
82 cd04132 Rho4_like Rho4-like su 99.8 6.5E-20 1.4E-24 185.9 19.0 164 36-238 1-168 (187)
83 smart00174 RHO Rho (Ras homolo 99.8 5.5E-20 1.2E-24 183.6 17.6 160 38-236 1-171 (174)
84 cd04142 RRP22 RRP22 subfamily. 99.8 5.2E-20 1.1E-24 190.5 17.4 168 36-238 1-175 (198)
85 cd04177 RSR1 RSR1 subgroup. R 99.8 1.1E-19 2.5E-24 181.2 18.8 160 35-236 1-163 (168)
86 cd04123 Rab21 Rab21 subfamily. 99.8 1.9E-19 4.2E-24 176.0 18.8 159 36-236 1-161 (162)
87 PLN03108 Rab family protein; P 99.8 1.8E-19 3.9E-24 187.8 19.3 163 34-238 5-169 (210)
88 cd01863 Rab18 Rab18 subfamily. 99.8 2E-19 4.3E-24 177.1 18.5 158 36-235 1-160 (161)
89 cd01860 Rab5_related Rab5-rela 99.8 2.3E-19 4.9E-24 176.8 18.9 160 35-236 1-162 (163)
90 cd01862 Rab7 Rab7 subfamily. 99.8 2.9E-19 6.3E-24 177.3 19.5 165 36-238 1-168 (172)
91 cd01892 Miro2 Miro2 subfamily. 99.8 1.4E-19 3E-24 181.9 17.0 161 33-237 2-166 (169)
92 PLN03118 Rab family protein; P 99.8 3.9E-19 8.4E-24 184.9 20.9 168 31-239 10-179 (211)
93 KOG0097|consensus 99.8 9.4E-20 2E-24 174.1 14.1 162 33-237 9-173 (215)
94 cd04146 RERG_RasL11_like RERG/ 99.8 1.7E-19 3.6E-24 179.0 16.5 159 37-236 1-163 (165)
95 cd04103 Centaurin_gamma Centau 99.8 2.7E-19 5.8E-24 178.4 17.7 154 36-235 1-157 (158)
96 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2.4E-19 5.2E-24 179.9 17.0 159 36-233 1-170 (173)
97 cd04149 Arf6 Arf6 subfamily. 99.8 2.5E-19 5.4E-24 180.0 17.0 153 34-233 8-166 (168)
98 cd04143 Rhes_like Rhes_like su 99.8 3.6E-19 7.7E-24 190.6 19.0 167 36-236 1-170 (247)
99 cd04135 Tc10 TC10 subfamily. 99.8 3.9E-19 8.5E-24 177.4 17.7 162 36-236 1-173 (174)
100 cd04139 RalA_RalB RalA/RalB su 99.8 7.3E-19 1.6E-23 172.5 18.9 159 36-236 1-161 (164)
101 cd04148 RGK RGK subfamily. Th 99.8 6E-19 1.3E-23 185.6 19.1 159 36-237 1-163 (221)
102 PRK03003 GTP-binding protein D 99.8 1E-17 2.2E-22 195.1 31.1 154 35-236 38-198 (472)
103 cd04158 ARD1 ARD1 subfamily. 99.8 7.5E-19 1.6E-23 176.1 16.9 155 37-238 1-162 (169)
104 cd00154 Rab Rab family. Rab G 99.8 1.5E-18 3.2E-23 167.7 17.9 156 36-233 1-158 (159)
105 cd01870 RhoA_like RhoA-like su 99.8 1.1E-18 2.4E-23 174.4 17.4 162 36-236 2-174 (175)
106 cd04114 Rab30 Rab30 subfamily. 99.8 2.3E-18 4.9E-23 170.9 19.2 161 34-236 6-168 (169)
107 smart00177 ARF ARF-like small 99.8 1.1E-18 2.3E-23 176.4 17.0 156 34-236 12-173 (175)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.8E-18 3.8E-23 176.1 18.3 161 35-237 3-170 (183)
109 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.7E-18 3.7E-23 172.1 17.0 152 36-233 1-157 (159)
110 cd04102 RabL3 RabL3 (Rab-like3 99.8 3.3E-18 7.1E-23 178.0 19.7 182 36-235 1-195 (202)
111 cd04154 Arl2 Arl2 subfamily. 99.8 1.8E-18 3.8E-23 173.7 17.1 153 34-233 13-171 (173)
112 PF02421 FeoB_N: Ferrous iron 99.8 3.2E-19 7E-24 177.9 11.4 147 36-232 1-156 (156)
113 cd00876 Ras Ras family. The R 99.8 2.6E-18 5.6E-23 167.7 17.1 157 37-235 1-159 (160)
114 cd00157 Rho Rho (Ras homology) 99.8 2.5E-18 5.4E-23 170.4 17.1 161 36-234 1-170 (171)
115 PLN00223 ADP-ribosylation fact 99.8 2.7E-18 5.9E-23 174.9 17.6 152 35-236 17-177 (181)
116 cd04129 Rho2 Rho2 subfamily. 99.8 3.6E-18 7.9E-23 174.2 17.8 164 36-238 2-174 (187)
117 cd04157 Arl6 Arl6 subfamily. 99.8 3.5E-18 7.5E-23 167.9 15.4 156 37-234 1-161 (162)
118 PTZ00133 ADP-ribosylation fact 99.8 6.3E-18 1.4E-22 172.3 16.8 156 35-236 17-177 (182)
119 cd04137 RheB Rheb (Ras Homolog 99.8 1.2E-17 2.6E-22 168.0 18.2 161 36-238 2-164 (180)
120 KOG1673|consensus 99.8 1.7E-18 3.7E-23 168.1 11.3 176 29-242 14-191 (205)
121 cd04147 Ras_dva Ras-dva subfam 99.8 1E-17 2.2E-22 172.6 17.7 159 37-236 1-162 (198)
122 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.4E-18 7.3E-23 168.2 13.5 156 37-234 1-159 (160)
123 PTZ00132 GTP-binding nuclear p 99.8 1.5E-17 3.3E-22 173.3 19.1 161 32-237 6-168 (215)
124 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 2.4E-18 5.1E-23 172.1 12.4 149 38-233 2-162 (164)
125 KOG0395|consensus 99.8 6.1E-18 1.3E-22 175.2 15.6 161 34-236 2-164 (196)
126 TIGR03594 GTPase_EngA ribosome 99.8 1.7E-16 3.7E-21 182.1 28.8 147 37-236 1-159 (429)
127 TIGR02528 EutP ethanolamine ut 99.8 4.2E-18 9E-23 164.9 12.9 134 37-233 2-141 (142)
128 PLN00023 GTP-binding protein; 99.8 1E-17 2.2E-22 184.0 17.1 157 29-212 15-189 (334)
129 cd01893 Miro1 Miro1 subfamily. 99.8 2.3E-17 5E-22 164.5 18.1 159 36-236 1-163 (166)
130 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.6E-18 1.4E-22 167.3 13.7 155 37-234 1-166 (167)
131 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.3E-17 2.7E-22 168.1 15.5 154 35-234 15-173 (174)
132 cd04151 Arl1 Arl1 subfamily. 99.8 1.4E-17 3.1E-22 164.2 15.2 155 37-234 1-157 (158)
133 PRK00093 GTP-binding protein D 99.7 4.4E-16 9.6E-21 179.2 28.6 148 36-234 2-159 (435)
134 cd00878 Arf_Arl Arf (ADP-ribos 99.7 7.7E-17 1.7E-21 158.4 16.0 154 37-233 1-156 (158)
135 PRK09518 bifunctional cytidyla 99.7 2E-15 4.4E-20 183.8 31.3 154 35-236 275-435 (712)
136 cd04161 Arl2l1_Arl13_like Arl2 99.7 5.6E-17 1.2E-21 162.5 14.8 156 37-233 1-165 (167)
137 cd00879 Sar1 Sar1 subfamily. 99.7 1E-16 2.2E-21 162.9 16.7 155 34-235 18-189 (190)
138 cd04171 SelB SelB subfamily. 99.7 2.4E-16 5.3E-21 154.6 18.0 153 37-234 2-163 (164)
139 cd01890 LepA LepA subfamily. 99.7 2.1E-16 4.6E-21 158.4 17.3 154 36-236 1-176 (179)
140 cd01897 NOG NOG1 is a nucleola 99.7 3.3E-16 7.2E-21 155.2 18.1 157 37-236 2-167 (168)
141 cd01898 Obg Obg subfamily. Th 99.7 1.8E-16 4E-21 157.2 15.8 159 37-235 2-169 (170)
142 cd04159 Arl10_like Arl10-like 99.7 3.2E-16 7E-21 151.6 14.7 151 38-234 2-158 (159)
143 KOG4252|consensus 99.7 1.9E-17 4E-22 164.2 6.0 162 32-237 17-181 (246)
144 smart00178 SAR Sar1p-like memb 99.7 7.7E-16 1.7E-20 156.9 17.0 154 35-235 17-183 (184)
145 cd01878 HflX HflX subfamily. 99.7 6.4E-16 1.4E-20 159.4 16.4 159 33-235 39-203 (204)
146 KOG0393|consensus 99.7 1.3E-16 2.8E-21 163.7 10.0 167 34-237 3-179 (198)
147 PRK12299 obgE GTPase CgtA; Rev 99.7 9.1E-16 2E-20 171.1 17.5 162 36-237 159-328 (335)
148 TIGR00437 feoB ferrous iron tr 99.7 7E-16 1.5E-20 183.7 16.2 146 42-236 1-154 (591)
149 COG1100 GTPase SAR1 and relate 99.7 2.2E-15 4.7E-20 156.4 17.6 168 35-238 5-186 (219)
150 cd04155 Arl3 Arl3 subfamily. 99.7 2.5E-15 5.5E-20 149.9 16.8 151 34-234 13-172 (173)
151 KOG0073|consensus 99.7 3.7E-15 8E-20 146.7 17.2 163 34-237 15-178 (185)
152 PTZ00099 rab6; Provisional 99.6 2.4E-15 5.3E-20 153.1 16.2 138 59-238 6-143 (176)
153 TIGR00231 small_GTP small GTP- 99.6 6.6E-15 1.4E-19 141.1 18.1 156 35-233 1-160 (161)
154 PF00025 Arf: ADP-ribosylation 99.6 2.5E-15 5.3E-20 152.5 15.5 160 33-235 12-174 (175)
155 PRK04213 GTP-binding protein; 99.6 2.5E-15 5.4E-20 154.5 15.5 153 34-236 8-191 (201)
156 TIGR02729 Obg_CgtA Obg family 99.6 2.9E-15 6.3E-20 166.8 16.2 160 36-236 158-328 (329)
157 PRK03003 GTP-binding protein D 99.6 7.5E-15 1.6E-19 171.1 19.1 185 2-236 186-381 (472)
158 TIGR00436 era GTP-binding prot 99.6 7.4E-15 1.6E-19 159.1 17.6 155 37-238 2-165 (270)
159 KOG1486|consensus 99.6 3.2E-15 7E-20 155.6 13.3 246 19-301 46-340 (364)
160 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.4E-14 3.1E-19 143.1 17.0 156 37-236 2-165 (168)
161 cd01879 FeoB Ferrous iron tran 99.6 8.4E-15 1.8E-19 143.1 14.7 147 40-236 1-156 (158)
162 TIGR03156 GTP_HflX GTP-binding 99.6 1E-14 2.2E-19 163.8 17.3 157 34-235 188-350 (351)
163 PRK15467 ethanolamine utilizat 99.6 5E-15 1.1E-19 147.9 13.0 141 37-236 3-146 (158)
164 COG1160 Predicted GTPases [Gen 99.6 2.7E-13 5.8E-18 153.1 27.7 150 36-236 4-164 (444)
165 PRK15494 era GTPase Era; Provi 99.6 2.7E-14 5.8E-19 159.8 18.4 161 33-240 50-219 (339)
166 cd01891 TypA_BipA TypA (tyrosi 99.6 1.9E-14 4.2E-19 147.6 15.2 148 36-228 3-173 (194)
167 cd00881 GTP_translation_factor 99.6 4.9E-14 1.1E-18 141.5 17.7 154 37-236 1-186 (189)
168 cd01881 Obg_like The Obg-like 99.6 2.4E-14 5.2E-19 142.4 14.0 162 40-235 1-175 (176)
169 PRK12297 obgE GTPase CgtA; Rev 99.6 3.5E-14 7.6E-19 162.6 17.2 156 37-238 160-328 (424)
170 cd01889 SelB_euk SelB subfamil 99.6 4E-14 8.7E-19 145.1 15.7 157 36-236 1-185 (192)
171 cd01896 DRG The developmentall 99.6 3E-14 6.4E-19 151.5 14.5 181 37-236 2-225 (233)
172 TIGR00450 mnmE_trmE_thdF tRNA 99.6 5E-14 1.1E-18 162.7 17.2 151 34-236 202-359 (442)
173 cd04164 trmE TrmE (MnmE, ThdF, 99.6 9.1E-14 2E-18 135.0 16.5 147 36-235 2-155 (157)
174 PF08477 Miro: Miro-like prote 99.6 2.6E-14 5.6E-19 134.2 12.2 115 37-186 1-119 (119)
175 PRK11058 GTPase HflX; Provisio 99.6 5E-14 1.1E-18 161.9 16.9 158 36-237 198-362 (426)
176 cd04163 Era Era subfamily. Er 99.6 1.7E-13 3.8E-18 133.2 17.9 157 35-235 3-167 (168)
177 TIGR03594 GTPase_EngA ribosome 99.6 1.1E-13 2.4E-18 158.9 19.2 186 2-236 147-343 (429)
178 cd01895 EngA2 EngA2 subfamily. 99.6 1.2E-13 2.6E-18 135.9 16.7 158 35-235 2-173 (174)
179 PRK00454 engB GTP-binding prot 99.5 2E-13 4.3E-18 139.1 18.3 160 32-236 21-193 (196)
180 cd00882 Ras_like_GTPase Ras-li 99.5 1.2E-13 2.6E-18 130.2 14.8 153 40-233 1-156 (157)
181 cd01894 EngA1 EngA1 subfamily. 99.5 1.7E-13 3.6E-18 133.3 16.2 147 39-235 1-156 (157)
182 PRK05291 trmE tRNA modificatio 99.5 7.6E-14 1.7E-18 161.7 16.2 149 34-236 214-369 (449)
183 PRK12296 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.4E-18 160.5 17.1 170 36-238 160-341 (500)
184 TIGR03598 GTPase_YsxC ribosome 99.5 3.7E-13 8E-18 136.4 16.4 148 32-226 15-179 (179)
185 PRK00089 era GTPase Era; Revie 99.5 1.1E-12 2.5E-17 143.3 19.6 159 34-237 4-171 (292)
186 PRK12298 obgE GTPase CgtA; Rev 99.5 1.7E-12 3.7E-17 147.7 20.7 161 37-237 161-333 (390)
187 PRK00093 GTP-binding protein D 99.5 1.3E-12 2.8E-17 150.6 19.7 161 34-236 172-343 (435)
188 TIGR01393 lepA GTP-binding pro 99.5 1.2E-12 2.5E-17 156.4 18.7 155 35-236 3-179 (595)
189 KOG0075|consensus 99.5 1.7E-13 3.7E-18 132.6 9.0 158 35-235 20-180 (186)
190 TIGR00475 selB selenocysteine- 99.5 9.6E-13 2.1E-17 156.9 17.5 155 37-237 2-166 (581)
191 PRK09518 bifunctional cytidyla 99.4 2.3E-12 5E-17 157.3 20.4 188 2-237 423-621 (712)
192 KOG4423|consensus 99.4 8.3E-15 1.8E-19 146.6 -1.3 165 34-236 24-193 (229)
193 KOG0096|consensus 99.4 2.5E-13 5.5E-18 136.7 8.3 162 34-240 9-172 (216)
194 KOG3883|consensus 99.4 3.9E-12 8.4E-17 124.0 15.3 164 34-238 8-176 (198)
195 cd01876 YihA_EngB The YihA (En 99.4 6.2E-12 1.3E-16 122.8 16.4 153 37-235 1-169 (170)
196 PF10662 PduV-EutP: Ethanolami 99.4 3.9E-12 8.5E-17 125.1 14.8 135 36-233 2-142 (143)
197 cd04105 SR_beta Signal recogni 99.4 4E-12 8.7E-17 132.3 15.8 148 37-219 2-154 (203)
198 cd01888 eIF2_gamma eIF2-gamma 99.4 5.1E-12 1.1E-16 131.3 16.5 159 36-236 1-198 (203)
199 COG1159 Era GTPase [General fu 99.4 5.7E-12 1.2E-16 135.8 16.8 163 33-241 4-176 (298)
200 cd00880 Era_like Era (E. coli 99.4 6E-12 1.3E-16 120.5 15.2 155 40-235 1-162 (163)
201 PF00009 GTP_EFTU: Elongation 99.4 9.8E-12 2.1E-16 127.3 17.5 158 35-236 3-186 (188)
202 CHL00189 infB translation init 99.4 6.6E-12 1.4E-16 151.8 17.7 160 32-235 241-408 (742)
203 KOG0070|consensus 99.4 2.4E-12 5.1E-17 129.8 11.3 160 33-236 15-177 (181)
204 COG1160 Predicted GTPases [Gen 99.4 1.1E-11 2.4E-16 140.1 18.0 188 2-236 152-350 (444)
205 cd04166 CysN_ATPS CysN_ATPS su 99.4 5.7E-12 1.2E-16 131.4 14.4 148 37-228 1-185 (208)
206 TIGR00487 IF-2 translation ini 99.4 1E-11 2.2E-16 147.9 18.0 157 32-234 84-247 (587)
207 TIGR00483 EF-1_alpha translati 99.3 9.6E-12 2.1E-16 143.4 15.5 153 34-227 6-197 (426)
208 PRK05433 GTP-binding protein L 99.3 2.2E-11 4.7E-16 145.7 18.6 155 35-236 7-183 (600)
209 PRK05306 infB translation init 99.3 1.6E-11 3.5E-16 149.7 17.8 157 32-235 287-450 (787)
210 COG0486 ThdF Predicted GTPase 99.3 1.4E-11 2.9E-16 139.8 15.5 155 33-237 215-376 (454)
211 PRK12317 elongation factor 1-a 99.3 2.3E-11 5E-16 140.2 15.8 154 34-229 5-197 (425)
212 PRK10512 selenocysteinyl-tRNA- 99.3 3.3E-11 7.2E-16 144.5 17.4 155 37-236 2-165 (614)
213 cd04128 Spg1 Spg1p. Spg1p (se 99.3 2E-11 4.2E-16 124.8 11.7 132 393-584 51-182 (182)
214 COG1084 Predicted GTPase [Gene 99.3 3.8E-11 8.2E-16 130.6 14.1 160 32-236 165-335 (346)
215 KOG0071|consensus 99.3 3.6E-11 7.7E-16 115.9 12.3 159 34-236 16-177 (180)
216 KOG1489|consensus 99.3 6.8E-11 1.5E-15 127.8 15.7 156 36-235 197-365 (366)
217 KOG0076|consensus 99.3 8.5E-12 1.8E-16 124.3 7.8 155 35-236 17-186 (197)
218 cd04167 Snu114p Snu114p subfam 99.3 8.9E-11 1.9E-15 122.7 15.7 150 37-226 2-192 (213)
219 cd04165 GTPBP1_like GTPBP1-lik 99.3 1.3E-10 2.8E-15 123.1 16.4 157 37-235 1-221 (224)
220 TIGR00491 aIF-2 translation in 99.2 7.9E-11 1.7E-15 140.2 16.4 158 37-236 6-215 (590)
221 COG0218 Predicted GTPase [Gene 99.2 1.2E-10 2.7E-15 119.6 15.5 151 34-236 23-196 (200)
222 TIGR03680 eif2g_arch translati 99.2 7.4E-11 1.6E-15 135.3 15.3 161 34-236 3-195 (406)
223 COG2262 HflX GTPases [General 99.2 1.7E-10 3.6E-15 129.0 16.7 160 34-237 191-356 (411)
224 cd01884 EF_Tu EF-Tu subfamily. 99.2 4.3E-10 9.4E-15 116.6 17.1 146 35-225 2-171 (195)
225 PRK04004 translation initiatio 99.2 3.3E-10 7.2E-15 135.3 16.6 158 35-235 6-216 (586)
226 PRK04000 translation initiatio 99.2 2.7E-10 5.9E-15 130.9 15.3 159 34-236 8-200 (411)
227 COG2229 Predicted GTPase [Gene 99.2 7.3E-10 1.6E-14 112.0 16.1 155 31-235 6-176 (187)
228 cd04104 p47_IIGP_like p47 (47- 99.2 5.5E-10 1.2E-14 115.6 15.8 163 36-236 2-183 (197)
229 cd01899 Ygr210 Ygr210 subfamil 99.2 2.8E-10 6.1E-15 126.4 14.4 83 38-124 1-111 (318)
230 TIGR01394 TypA_BipA GTP-bindin 99.2 6.4E-10 1.4E-14 133.0 17.6 153 36-236 2-190 (594)
231 cd01883 EF1_alpha Eukaryotic e 99.1 3.1E-10 6.6E-15 119.4 13.1 148 37-226 1-194 (219)
232 PRK10218 GTP-binding protein; 99.1 1.1E-09 2.3E-14 131.1 18.7 157 35-236 5-194 (607)
233 COG0536 Obg Predicted GTPase [ 99.1 8.2E-10 1.8E-14 120.8 15.3 158 38-239 162-335 (369)
234 PRK12735 elongation factor Tu; 99.1 1.2E-09 2.6E-14 125.1 15.7 159 33-236 10-202 (396)
235 PRK09602 translation-associate 99.1 1.5E-09 3.3E-14 124.0 16.1 84 36-123 2-113 (396)
236 cd04168 TetM_like Tet(M)-like 99.1 1.8E-09 3.8E-14 115.4 15.2 132 37-218 1-152 (237)
237 KOG1707|consensus 99.1 5E-10 1.1E-14 128.9 11.3 167 31-236 5-174 (625)
238 PRK12736 elongation factor Tu; 99.1 2.4E-09 5.1E-14 122.6 16.7 158 34-236 11-200 (394)
239 KOG1423|consensus 99.1 2.3E-09 5E-14 115.5 15.2 165 32-236 69-270 (379)
240 KOG1487|consensus 99.1 5.2E-10 1.1E-14 117.7 9.6 237 26-300 50-333 (358)
241 KOG0074|consensus 99.1 1.1E-09 2.3E-14 105.9 10.9 152 33-233 15-175 (185)
242 cd04169 RF3 RF3 subfamily. Pe 99.0 3.8E-09 8.2E-14 114.8 16.5 137 35-218 2-159 (267)
243 TIGR00485 EF-Tu translation el 99.0 2E-09 4.4E-14 123.0 14.6 146 33-223 10-179 (394)
244 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 2E-09 4.4E-14 114.5 13.4 161 37-234 1-174 (232)
245 KOG0072|consensus 99.0 8.1E-10 1.8E-14 107.1 8.9 156 34-236 17-178 (182)
246 cd04170 EF-G_bact Elongation f 99.0 1.4E-09 3E-14 117.8 11.8 149 37-235 1-171 (268)
247 cd01885 EF2 EF2 (for archaea a 99.0 4E-09 8.7E-14 111.7 15.0 86 37-128 2-112 (222)
248 PRK13351 elongation factor G; 99.0 7.5E-09 1.6E-13 126.4 16.8 112 33-189 6-139 (687)
249 PF09439 SRPRB: Signal recogni 99.0 4.5E-09 9.7E-14 107.7 12.0 121 35-189 3-126 (181)
250 TIGR02034 CysN sulfate adenyly 99.0 6.2E-09 1.3E-13 119.6 14.2 148 36-228 1-188 (406)
251 PLN00043 elongation factor 1-a 98.9 4.4E-09 9.5E-14 122.1 12.5 157 34-227 6-203 (447)
252 PRK05506 bifunctional sulfate 98.9 9E-09 2E-13 124.5 15.5 149 34-227 23-211 (632)
253 PRK05124 cysN sulfate adenylyl 98.9 9.9E-09 2.2E-13 120.1 14.9 151 34-229 26-217 (474)
254 CHL00071 tufA elongation facto 98.9 1.3E-08 2.8E-13 117.1 15.5 147 34-225 11-181 (409)
255 cd01850 CDC_Septin CDC/Septin. 98.9 2.3E-08 5E-13 109.2 15.2 149 34-221 3-186 (276)
256 PRK00741 prfC peptide chain re 98.9 2.9E-08 6.3E-13 117.4 17.1 114 34-188 9-144 (526)
257 KOG0090|consensus 98.9 1.3E-08 2.8E-13 105.1 12.3 163 36-235 39-237 (238)
258 PLN03126 Elongation factor Tu; 98.9 1.8E-08 4E-13 117.7 15.2 147 32-224 78-249 (478)
259 cd04121 Rab40 Rab40 subfamily. 98.9 4.3E-09 9.4E-14 108.6 8.8 112 393-569 57-168 (189)
260 cd01886 EF-G Elongation factor 98.9 2.7E-08 5.7E-13 108.4 14.9 109 37-188 1-129 (270)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 9.2E-08 2E-12 98.7 18.1 166 36-237 1-184 (196)
262 PRK00049 elongation factor Tu; 98.9 4.1E-08 8.8E-13 112.5 16.8 158 33-235 10-201 (396)
263 PF01926 MMR_HSR1: 50S ribosom 98.9 3.1E-08 6.6E-13 93.3 13.1 94 37-139 1-104 (116)
264 PTZ00258 GTP-binding protein; 98.9 3.3E-08 7.2E-13 112.4 15.5 238 34-298 20-348 (390)
265 cd04109 Rab28 Rab28 subfamily. 98.8 1.2E-08 2.6E-13 106.8 10.1 120 392-572 51-170 (215)
266 COG4917 EutP Ethanolamine util 98.8 2.2E-08 4.7E-13 95.4 10.8 140 36-235 2-144 (148)
267 PLN03127 Elongation factor Tu; 98.8 8.7E-08 1.9E-12 111.4 18.0 157 34-236 60-251 (447)
268 KOG1490|consensus 98.8 1.4E-08 3E-13 115.3 10.5 165 32-238 165-342 (620)
269 cd01868 Rab11_like Rab11-like. 98.8 1.8E-08 3.9E-13 99.8 9.1 112 393-568 54-165 (165)
270 PTZ00141 elongation factor 1- 98.8 6.4E-08 1.4E-12 112.5 14.9 152 34-227 6-203 (446)
271 TIGR00484 EF-G translation elo 98.7 9.6E-08 2.1E-12 116.8 15.4 139 34-222 9-171 (689)
272 KOG1191|consensus 98.7 4.5E-08 9.7E-13 111.4 10.4 167 35-236 268-449 (531)
273 cd04133 Rop_like Rop subfamily 98.7 6.3E-08 1.4E-12 98.8 10.4 115 393-567 51-172 (176)
274 PRK12740 elongation factor G; 98.7 1.5E-07 3.2E-12 114.8 15.2 105 41-188 1-125 (668)
275 PTZ00327 eukaryotic translatio 98.7 1.6E-07 3.6E-12 109.2 14.7 162 32-236 31-232 (460)
276 smart00010 small_GTPase Small 98.7 9.8E-09 2.1E-13 96.3 3.4 115 36-226 1-115 (124)
277 cd01866 Rab2 Rab2 subfamily. 98.7 5.6E-08 1.2E-12 97.2 9.0 113 393-569 55-167 (168)
278 cd04120 Rab12 Rab12 subfamily. 98.7 6.7E-08 1.4E-12 100.9 9.7 113 393-569 51-164 (202)
279 PRK12739 elongation factor G; 98.7 3.2E-07 6.8E-12 112.3 17.0 112 34-188 7-138 (691)
280 smart00176 RAN Ran (Ras-relate 98.7 1E-07 2.2E-12 99.4 10.8 110 393-569 46-155 (200)
281 COG3596 Predicted GTPase [Gene 98.7 2.2E-07 4.7E-12 99.7 12.9 164 35-236 39-221 (296)
282 cd04107 Rab32_Rab38 Rab38/Rab3 98.7 1.1E-07 2.3E-12 98.3 10.4 118 393-570 52-170 (201)
283 cd04119 RJL RJL (RabJ-Like) su 98.7 9.6E-08 2.1E-12 93.9 9.5 117 393-568 51-167 (168)
284 PF00071 Ras: Ras family; Int 98.7 7.8E-08 1.7E-12 94.7 8.9 112 393-568 50-161 (162)
285 cd04131 Rnd Rnd subfamily. Th 98.6 8.5E-08 1.8E-12 97.8 9.2 113 393-565 51-173 (178)
286 TIGR00503 prfC peptide chain r 98.6 3.2E-07 6.9E-12 108.7 14.9 114 34-188 10-145 (527)
287 cd04122 Rab14 Rab14 subfamily. 98.6 9.7E-08 2.1E-12 95.0 9.1 113 393-569 53-165 (166)
288 smart00175 RAB Rab subfamily o 98.6 1E-07 2.2E-12 93.7 8.7 112 393-568 51-162 (164)
289 cd01882 BMS1 Bms1. Bms1 is an 98.6 1.2E-06 2.6E-11 93.0 17.2 140 33-223 37-182 (225)
290 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 1.2E-07 2.5E-12 97.4 9.2 114 393-566 55-178 (182)
291 PRK13768 GTPase; Provisional 98.6 3.6E-07 7.8E-12 98.7 13.1 121 84-236 98-246 (253)
292 cd04112 Rab26 Rab26 subfamily. 98.6 1.4E-07 2.9E-12 96.8 9.3 115 393-571 52-166 (191)
293 cd01867 Rab8_Rab10_Rab13_like 98.6 1.3E-07 2.9E-12 94.2 9.0 113 393-569 54-166 (167)
294 cd04111 Rab39 Rab39 subfamily. 98.6 1.4E-07 3.1E-12 98.7 9.6 134 393-597 54-187 (211)
295 COG0532 InfB Translation initi 98.6 4.8E-07 1E-11 104.6 14.1 153 36-236 6-169 (509)
296 PLN03110 Rab GTPase; Provision 98.6 1.3E-07 2.8E-12 99.3 8.7 114 393-570 63-176 (216)
297 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.6 1.6E-07 3.5E-12 100.2 9.5 118 393-569 63-189 (232)
298 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.6 1.6E-07 3.5E-12 93.2 8.9 112 393-568 53-164 (166)
299 PRK09866 hypothetical protein; 98.6 1.2E-06 2.6E-11 103.5 17.2 116 84-235 231-351 (741)
300 PTZ00099 rab6; Provisional 98.6 4.4E-07 9.4E-12 92.7 11.9 112 394-569 32-143 (176)
301 cd04127 Rab27A Rab27a subfamil 98.6 2.1E-07 4.6E-12 93.5 9.1 113 393-568 65-177 (180)
302 cd04176 Rap2 Rap2 subgroup. T 98.5 3.8E-07 8.2E-12 90.1 10.2 113 392-567 50-162 (163)
303 cd04138 H_N_K_Ras_like H-Ras/N 98.5 4.4E-07 9.5E-12 88.6 10.6 111 393-567 51-161 (162)
304 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.5 3E-07 6.4E-12 92.9 9.6 115 392-569 51-165 (172)
305 cd04126 Rab20 Rab20 subfamily. 98.5 1.9E-07 4.1E-12 98.9 8.4 123 393-574 46-196 (220)
306 cd04108 Rab36_Rab34 Rab34/Rab3 98.5 3.1E-07 6.8E-12 92.6 9.7 119 393-572 51-169 (170)
307 cd01865 Rab3 Rab3 subfamily. 98.5 2.8E-07 6.2E-12 91.7 9.0 113 393-569 52-164 (165)
308 TIGR00157 ribosome small subun 98.5 3.1E-07 6.6E-12 98.8 9.8 84 112-234 36-120 (245)
309 PLN03071 GTP-binding nuclear p 98.5 4.3E-07 9.3E-12 95.8 10.8 112 392-570 63-174 (219)
310 cd01875 RhoG RhoG subfamily. 98.5 6.5E-07 1.4E-11 92.0 11.6 117 393-569 53-178 (191)
311 cd04117 Rab15 Rab15 subfamily. 98.5 3.5E-07 7.5E-12 91.0 9.3 109 393-565 51-159 (161)
312 cd01863 Rab18 Rab18 subfamily. 98.5 5E-07 1.1E-11 88.9 10.2 110 393-567 51-161 (161)
313 cd04124 RabL2 RabL2 subfamily. 98.5 7.8E-07 1.7E-11 88.4 11.1 108 393-568 51-158 (161)
314 cd00877 Ran Ran (Ras-related n 98.5 5.8E-07 1.3E-11 90.1 10.1 113 392-571 50-162 (166)
315 cd04140 ARHI_like ARHI subfami 98.5 7E-07 1.5E-11 88.9 10.5 112 393-565 51-162 (165)
316 KOG0077|consensus 98.5 5.1E-07 1.1E-11 90.0 9.2 115 35-189 20-135 (193)
317 cd01864 Rab19 Rab19 subfamily. 98.5 4.3E-07 9.4E-12 90.1 8.9 110 393-566 54-164 (165)
318 cd04118 Rab24 Rab24 subfamily. 98.5 6E-07 1.3E-11 91.6 10.1 116 393-569 52-167 (193)
319 PRK00007 elongation factor G; 98.5 1E-06 2.2E-11 107.9 13.6 139 34-222 9-171 (693)
320 cd04132 Rho4_like Rho4-like su 98.5 4.8E-07 1E-11 91.8 9.1 117 393-570 51-169 (187)
321 cd04144 Ras2 Ras2 subfamily. 98.5 6E-07 1.3E-11 92.0 9.8 115 393-568 49-163 (190)
322 cd04106 Rab23_lke Rab23-like s 98.5 7.1E-07 1.5E-11 87.8 10.0 108 393-565 53-160 (162)
323 cd04125 RabA_like RabA-like su 98.5 5.4E-07 1.2E-11 91.8 9.4 113 393-569 51-163 (188)
324 cd04110 Rab35 Rab35 subfamily. 98.5 5.3E-07 1.1E-11 93.2 9.3 113 393-570 57-169 (199)
325 cd04134 Rho3 Rho3 subfamily. 98.5 8.7E-07 1.9E-11 90.8 10.8 117 393-569 50-175 (189)
326 cd04136 Rap_like Rap-like subf 98.5 9.1E-07 2E-11 86.9 10.4 111 393-566 51-161 (163)
327 cd01873 RhoBTB RhoBTB subfamil 98.5 8E-07 1.7E-11 92.2 10.2 111 393-565 68-193 (195)
328 cd04145 M_R_Ras_like M-Ras/R-R 98.5 1E-06 2.2E-11 86.8 10.4 111 393-566 52-162 (164)
329 cd04177 RSR1 RSR1 subgroup. R 98.4 1.1E-06 2.4E-11 87.7 10.6 113 393-568 51-164 (168)
330 cd00154 Rab Rab family. Rab G 98.4 7.3E-07 1.6E-11 86.0 9.0 108 393-564 51-158 (159)
331 smart00174 RHO Rho (Ras homolo 98.4 1.5E-06 3.2E-11 86.8 11.4 115 393-567 48-171 (174)
332 cd04175 Rap1 Rap1 subgroup. T 98.4 1.3E-06 2.9E-11 86.4 10.8 112 393-567 51-162 (164)
333 cd01874 Cdc42 Cdc42 subfamily. 98.4 1E-06 2.3E-11 89.3 10.2 114 393-566 51-173 (175)
334 TIGR00101 ureG urease accessor 98.4 2.2E-06 4.9E-11 89.3 12.7 55 179-236 141-195 (199)
335 KOG0462|consensus 98.4 3.5E-06 7.7E-11 97.1 15.1 160 33-236 58-234 (650)
336 PRK14845 translation initiatio 98.4 2.1E-06 4.6E-11 107.8 14.2 113 84-236 527-672 (1049)
337 TIGR00490 aEF-2 translation el 98.4 9.9E-07 2.2E-11 108.4 11.3 85 35-127 19-124 (720)
338 KOG0078|consensus 98.4 6.1E-07 1.3E-11 92.8 7.9 140 360-569 36-175 (207)
339 PTZ00369 Ras-like protein; Pro 98.4 1.3E-06 2.7E-11 89.5 10.2 114 393-569 55-168 (189)
340 cd04116 Rab9 Rab9 subfamily. 98.4 1.2E-06 2.6E-11 87.2 9.7 113 393-566 56-169 (170)
341 cd01853 Toc34_like Toc34-like 98.4 8.6E-06 1.9E-10 87.9 16.6 123 34-188 30-162 (249)
342 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.4 1.3E-06 2.8E-11 92.7 10.1 115 393-567 51-175 (222)
343 cd04123 Rab21 Rab21 subfamily. 98.4 1.3E-06 2.9E-11 85.2 9.1 112 392-567 50-161 (162)
344 cd04146 RERG_RasL11_like RERG/ 98.4 2.2E-06 4.9E-11 85.0 10.6 113 393-567 49-163 (165)
345 smart00173 RAS Ras subfamily o 98.4 2E-06 4.2E-11 84.9 10.1 112 393-567 50-161 (164)
346 cd01871 Rac1_like Rac1-like su 98.4 2.6E-06 5.7E-11 86.2 11.2 112 394-565 52-172 (174)
347 cd00876 Ras Ras family. The R 98.4 1.5E-06 3.2E-11 84.7 9.1 112 393-567 49-160 (160)
348 cd04101 RabL4 RabL4 (Rab-like4 98.4 1.2E-06 2.6E-11 86.5 8.5 110 393-567 54-163 (164)
349 cd04113 Rab4 Rab4 subfamily. 98.4 1.5E-06 3.2E-11 85.7 9.0 110 393-566 51-160 (161)
350 KOG3886|consensus 98.3 1.2E-06 2.6E-11 91.6 8.2 166 35-235 4-177 (295)
351 cd04130 Wrch_1 Wrch-1 subfamil 98.3 1.9E-06 4.1E-11 86.6 9.4 112 393-563 50-169 (173)
352 KOG0087|consensus 98.3 1E-06 2.2E-11 91.2 7.5 134 364-569 42-177 (222)
353 TIGR00991 3a0901s02IAP34 GTP-b 98.3 1.3E-05 2.8E-10 88.7 16.5 87 34-124 37-130 (313)
354 PRK09601 GTP-binding protein Y 98.3 1.1E-05 2.5E-10 91.1 16.3 249 36-296 3-322 (364)
355 PF03029 ATP_bind_1: Conserved 98.3 5.1E-06 1.1E-10 89.1 12.8 124 84-236 92-236 (238)
356 cd04142 RRP22 RRP22 subfamily. 98.3 3.4E-06 7.4E-11 87.6 11.1 99 422-575 82-181 (198)
357 KOG0084|consensus 98.3 2.6E-06 5.6E-11 87.4 9.4 116 389-569 55-173 (205)
358 COG0481 LepA Membrane GTPase L 98.3 4.5E-06 9.8E-11 94.9 12.2 155 35-236 9-185 (603)
359 cd01900 YchF YchF subfamily. 98.3 7.4E-06 1.6E-10 89.5 13.5 81 38-123 1-103 (274)
360 PRK09435 membrane ATPase/prote 98.3 9E-06 2E-10 91.1 14.4 57 177-236 196-259 (332)
361 TIGR02836 spore_IV_A stage IV 98.3 1.9E-05 4.2E-10 89.5 16.8 167 34-241 16-238 (492)
362 cd04129 Rho2 Rho2 subfamily. 98.3 3.9E-06 8.4E-11 85.8 10.5 122 393-574 51-179 (187)
363 KOG1145|consensus 98.3 1E-05 2.2E-10 93.4 14.7 151 33-236 151-315 (683)
364 cd01861 Rab6 Rab6 subfamily. 98.3 2.7E-06 5.9E-11 83.5 8.9 110 393-566 51-160 (161)
365 cd01862 Rab7 Rab7 subfamily. 98.3 3.6E-06 7.9E-11 83.4 9.6 117 393-569 51-168 (172)
366 KOG0092|consensus 98.3 3.7E-06 8.1E-11 85.9 9.6 118 394-575 57-174 (200)
367 cd04139 RalA_RalB RalA/RalB su 98.3 4.8E-06 1E-10 81.6 10.1 113 392-567 49-161 (164)
368 PF05049 IIGP: Interferon-indu 98.3 8.8E-06 1.9E-10 92.1 13.4 163 35-236 35-217 (376)
369 COG5256 TEF1 Translation elong 98.2 1.1E-05 2.3E-10 91.1 13.4 157 34-228 6-202 (428)
370 cd01870 RhoA_like RhoA-like su 98.2 6.2E-06 1.3E-10 82.4 10.5 114 393-566 51-173 (175)
371 cd04135 Tc10 TC10 subfamily. 98.2 6.6E-06 1.4E-10 82.1 10.6 115 393-567 50-173 (174)
372 cd01860 Rab5_related Rab5-rela 98.2 4.2E-06 9.1E-11 82.4 8.9 111 393-567 52-162 (163)
373 PF04548 AIG1: AIG1 family; I 98.2 5E-05 1.1E-09 79.8 17.3 166 36-236 1-185 (212)
374 cd04115 Rab33B_Rab33A Rab33B/R 98.2 5.5E-06 1.2E-10 82.9 9.7 112 393-567 53-168 (170)
375 cd04103 Centaurin_gamma Centau 98.2 5.9E-06 1.3E-10 82.6 9.6 108 393-566 49-157 (158)
376 cd04147 Ras_dva Ras-dva subfam 98.2 8.3E-06 1.8E-10 84.2 11.1 115 393-568 49-163 (198)
377 TIGR00073 hypB hydrogenase acc 98.2 1.4E-05 3E-10 83.6 12.7 58 175-235 148-205 (207)
378 KOG0461|consensus 98.2 4E-05 8.6E-10 84.2 15.6 175 32-256 4-206 (522)
379 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.2 5.9E-06 1.3E-10 84.2 8.7 114 393-567 54-169 (183)
380 KOG1707|consensus 98.2 1.4E-05 2.9E-10 93.1 12.4 159 30-235 420-581 (625)
381 PLN03108 Rab family protein; P 98.2 6.5E-06 1.4E-10 86.1 9.0 133 393-589 57-190 (210)
382 cd04158 ARD1 ARD1 subfamily. 98.1 5.7E-06 1.2E-10 83.0 8.0 118 391-569 43-162 (169)
383 KOG1532|consensus 98.1 2.4E-05 5.1E-10 83.9 12.8 116 84-236 117-263 (366)
384 cd04102 RabL3 RabL3 (Rab-like3 98.1 2E-05 4.3E-10 82.5 11.9 131 393-564 56-193 (202)
385 cd04143 Rhes_like Rhes_like su 98.1 1.7E-05 3.7E-10 85.5 11.4 121 393-567 50-170 (247)
386 PLN03118 Rab family protein; P 98.1 1.8E-05 3.8E-10 82.6 11.2 115 393-570 64-179 (211)
387 cd04148 RGK RGK subfamily. Th 98.1 1.4E-05 3E-10 84.5 10.2 113 393-569 52-164 (221)
388 cd00066 G-alpha G protein alph 98.1 4.3E-05 9.3E-10 85.3 14.6 124 83-237 161-311 (317)
389 cd01893 Miro1 Miro1 subfamily. 98.1 2.7E-05 5.7E-10 77.7 10.8 112 393-566 49-162 (166)
390 PRK07560 elongation factor EF- 98.1 3.5E-05 7.5E-10 95.2 14.0 87 35-127 20-125 (731)
391 cd01892 Miro2 Miro2 subfamily. 98.0 1.1E-05 2.5E-10 81.1 7.9 109 393-568 56-166 (169)
392 cd04114 Rab30 Rab30 subfamily. 98.0 1.7E-05 3.8E-10 78.6 9.1 109 394-566 59-167 (169)
393 cd00157 Rho Rho (Ras homology) 98.0 3E-05 6.5E-10 76.8 10.4 114 393-565 50-170 (171)
394 COG2895 CysN GTPases - Sulfate 98.0 4.9E-05 1.1E-09 84.1 12.6 146 34-226 5-192 (431)
395 KOG0410|consensus 98.0 2E-05 4.4E-10 86.2 9.5 162 32-238 175-342 (410)
396 cd04157 Arl6 Arl6 subfamily. 98.0 1.5E-05 3.3E-10 78.2 7.8 114 392-565 46-161 (162)
397 KOG0079|consensus 98.0 6.6E-06 1.4E-10 80.7 4.8 127 393-585 59-186 (198)
398 cd04151 Arl1 Arl1 subfamily. 98.0 2E-05 4.3E-10 77.7 8.3 111 393-564 45-156 (158)
399 PLN00116 translation elongatio 98.0 5E-05 1.1E-09 95.1 13.5 113 35-188 19-163 (843)
400 PRK00098 GTPase RsgA; Reviewed 98.0 3E-05 6.4E-10 85.9 10.2 84 112-233 80-163 (298)
401 TIGR00750 lao LAO/AO transport 98.0 6.3E-05 1.4E-09 83.3 12.8 59 175-236 172-237 (300)
402 cd04154 Arl2 Arl2 subfamily. 97.9 2.6E-05 5.6E-10 78.3 8.4 113 392-565 59-172 (173)
403 cd04149 Arf6 Arf6 subfamily. 97.9 2.2E-05 4.7E-10 79.0 7.6 111 392-564 54-166 (168)
404 smart00177 ARF ARF-like small 97.9 4E-05 8.6E-10 77.6 9.0 114 392-566 58-172 (175)
405 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.9 3.5E-05 7.6E-10 77.7 8.5 114 392-566 60-174 (174)
406 cd04160 Arfrp1 Arfrp1 subfamil 97.9 3.1E-05 6.8E-10 76.6 8.0 115 390-565 49-166 (167)
407 cd00878 Arf_Arl Arf (ADP-ribos 97.9 3.8E-05 8.3E-10 75.4 8.4 115 390-565 42-157 (158)
408 PTZ00416 elongation factor 2; 97.9 5.6E-05 1.2E-09 94.5 11.5 114 35-188 19-157 (836)
409 cd04162 Arl9_Arfrp2_like Arl9/ 97.9 3.4E-05 7.4E-10 77.2 7.9 109 393-564 46-162 (164)
410 COG1217 TypA Predicted membran 97.8 0.00038 8.1E-09 79.5 16.1 153 35-236 5-194 (603)
411 cd04156 ARLTS1 ARLTS1 subfamil 97.8 3.8E-05 8.3E-10 75.4 7.4 113 391-564 44-158 (160)
412 cd01854 YjeQ_engC YjeQ/EngC. 97.8 6.9E-05 1.5E-09 82.5 10.1 83 112-234 78-161 (287)
413 KOG0094|consensus 97.8 0.00013 2.8E-09 75.0 11.0 142 361-572 47-189 (221)
414 cd01897 NOG NOG1 is a nucleola 97.8 8.7E-05 1.9E-09 73.5 8.8 54 507-567 114-167 (168)
415 cd01890 LepA LepA subfamily. 97.8 0.00012 2.5E-09 73.5 9.8 105 393-567 69-176 (179)
416 PRK12288 GTPase RsgA; Reviewed 97.7 0.00016 3.6E-09 81.7 11.4 87 111-234 119-205 (347)
417 PF00735 Septin: Septin; Inte 97.7 0.00026 5.6E-09 77.9 12.6 140 35-218 4-182 (281)
418 COG3276 SelB Selenocysteine-sp 97.7 0.00024 5.3E-09 80.9 12.6 149 38-236 3-161 (447)
419 COG0012 Predicted GTPase, prob 97.7 0.00033 7.1E-09 78.8 13.4 87 35-124 2-109 (372)
420 PRK12289 GTPase RsgA; Reviewed 97.7 0.00013 2.8E-09 82.6 10.5 83 112-233 89-171 (352)
421 cd00882 Ras_like_GTPase Ras-li 97.7 0.00022 4.8E-09 66.8 10.5 111 392-564 46-156 (157)
422 cd01859 MJ1464 MJ1464. This f 97.7 0.00012 2.7E-09 72.5 9.1 55 175-236 41-95 (156)
423 cd01855 YqeH YqeH. YqeH is an 97.7 0.00015 3.3E-09 74.4 9.6 56 175-236 61-124 (190)
424 KOG0093|consensus 97.7 5.8E-05 1.3E-09 74.2 5.7 112 393-569 72-184 (193)
425 cd04150 Arf1_5_like Arf1-Arf5- 97.7 0.00013 2.9E-09 72.5 8.5 108 393-564 46-157 (159)
426 PRK10463 hydrogenase nickel in 97.7 0.0002 4.3E-09 78.8 10.0 58 174-235 229-287 (290)
427 TIGR00993 3a0901s04IAP86 chlor 97.6 0.00077 1.7E-08 80.7 15.3 123 34-189 117-250 (763)
428 PLN00223 ADP-ribosylation fact 97.6 0.00025 5.4E-09 72.5 10.0 115 392-567 62-177 (181)
429 cd01898 Obg Obg subfamily. Th 97.6 0.00024 5.3E-09 70.3 9.6 114 392-566 49-169 (170)
430 cd04137 RheB Rheb (Ras Homolog 97.6 0.00026 5.7E-09 71.2 9.9 116 393-571 51-166 (180)
431 cd01858 NGP_1 NGP-1. Autoanti 97.6 0.00027 5.9E-09 70.4 9.6 86 112-236 8-94 (157)
432 cd01849 YlqF_related_GTPase Yl 97.6 0.00025 5.4E-09 70.6 9.3 56 175-236 29-84 (155)
433 TIGR00157 ribosome small subun 97.6 0.00018 3.9E-09 77.5 8.8 83 423-566 39-121 (245)
434 KOG2486|consensus 97.6 0.00015 3.3E-09 78.2 8.1 157 32-234 133-313 (320)
435 cd04159 Arl10_like Arl10-like 97.6 0.00016 3.5E-09 69.7 7.6 111 393-564 46-157 (159)
436 PF00350 Dynamin_N: Dynamin fa 97.6 0.00025 5.4E-09 70.6 9.1 21 38-58 1-21 (168)
437 smart00053 DYNc Dynamin, GTPas 97.6 0.00076 1.7E-08 72.6 13.3 24 35-58 26-49 (240)
438 TIGR03597 GTPase_YqeH ribosome 97.6 0.00027 5.9E-09 80.3 10.4 99 93-235 50-151 (360)
439 KOG1144|consensus 97.6 0.00035 7.5E-09 83.1 11.1 162 33-237 473-687 (1064)
440 cd04171 SelB SelB subfamily. 97.6 0.00061 1.3E-08 66.7 11.3 55 508-565 106-163 (164)
441 cd01859 MJ1464 MJ1464. This f 97.6 0.00027 6E-09 70.0 8.9 55 35-93 101-156 (156)
442 PLN00023 GTP-binding protein; 97.6 0.00019 4.2E-09 80.1 8.4 102 393-544 85-190 (334)
443 PTZ00132 GTP-binding nuclear p 97.6 0.00035 7.6E-09 73.0 9.7 110 393-569 60-169 (215)
444 cd04178 Nucleostemin_like Nucl 97.5 0.00022 4.7E-09 72.9 7.9 54 34-93 116-172 (172)
445 KOG0091|consensus 97.5 0.00028 6.2E-09 70.5 8.2 135 393-598 60-195 (213)
446 PTZ00133 ADP-ribosylation fact 97.5 0.00058 1.3E-08 69.7 10.7 113 392-568 62-178 (182)
447 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00018 3.9E-09 70.5 6.4 52 36-93 84-138 (141)
448 cd04161 Arl2l1_Arl13_like Arl2 97.5 0.00025 5.4E-09 71.1 7.4 114 392-564 44-165 (167)
449 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00042 9.1E-09 69.0 8.8 53 35-93 102-157 (157)
450 KOG0393|consensus 97.5 0.00059 1.3E-08 71.0 9.9 115 390-565 51-176 (198)
451 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00024 5.1E-09 78.3 7.3 55 34-94 120-177 (287)
452 cd00879 Sar1 Sar1 subfamily. 97.4 0.00025 5.4E-09 72.1 6.8 57 506-565 120-188 (190)
453 cd01856 YlqF YlqF. Proteins o 97.4 0.00042 9.1E-09 70.1 8.1 55 33-93 113-170 (171)
454 TIGR03596 GTPase_YlqF ribosome 97.4 0.00028 6E-09 77.3 7.0 54 34-93 117-173 (276)
455 cd01855 YqeH YqeH. YqeH is an 97.4 0.00032 6.9E-09 72.0 6.7 52 36-93 128-190 (190)
456 KOG0098|consensus 97.4 0.00046 9.9E-09 70.6 7.4 132 364-569 34-169 (216)
457 PF08477 Miro: Miro-like prote 97.3 0.00052 1.1E-08 64.2 7.1 50 393-449 52-101 (119)
458 cd01888 eIF2_gamma eIF2-gamma 97.3 0.0011 2.3E-08 69.2 10.0 59 508-569 139-200 (203)
459 PRK12299 obgE GTPase CgtA; Rev 97.3 0.0013 2.7E-08 74.3 10.6 91 423-569 239-329 (335)
460 KOG0081|consensus 97.3 0.00083 1.8E-08 66.9 7.8 113 392-568 68-181 (219)
461 KOG0458|consensus 97.3 0.0015 3.2E-08 76.7 10.9 159 32-228 174-373 (603)
462 cd01878 HflX HflX subfamily. 97.3 0.00089 1.9E-08 69.1 8.4 52 506-567 153-204 (204)
463 COG0378 HypB Ni2+-binding GTPa 97.2 0.002 4.3E-08 66.8 10.5 53 178-235 145-199 (202)
464 cd01849 YlqF_related_GTPase Yl 97.2 0.0005 1.1E-08 68.4 5.8 54 34-93 99-155 (155)
465 smart00178 SAR Sar1p-like memb 97.2 0.0014 3E-08 67.0 9.2 113 393-566 63-183 (184)
466 COG5192 BMS1 GTP-binding prote 97.2 0.0023 5E-08 74.2 11.6 139 31-222 65-211 (1077)
467 cd00881 GTP_translation_factor 97.2 0.0018 3.8E-08 65.0 9.3 59 506-567 114-186 (189)
468 PF03308 ArgK: ArgK protein; 97.2 0.0019 4.1E-08 69.8 9.7 55 176-236 168-229 (266)
469 smart00275 G_alpha G protein a 97.1 0.002 4.3E-08 72.9 10.2 125 83-238 184-335 (342)
470 KOG0395|consensus 97.1 0.0046 1E-07 64.6 11.9 115 388-565 46-162 (196)
471 KOG0468|consensus 97.1 0.0022 4.8E-08 75.8 10.2 116 32-188 125-262 (971)
472 COG1161 Predicted GTPases [Gen 97.1 0.00074 1.6E-08 75.7 6.2 55 34-94 131-188 (322)
473 cd01889 SelB_euk SelB subfamil 97.1 0.0021 4.5E-08 66.0 9.0 63 506-568 120-186 (192)
474 TIGR02729 Obg_CgtA Obg family 97.1 0.003 6.4E-08 71.1 10.8 89 423-567 238-328 (329)
475 PF00025 Arf: ADP-ribosylation 97.0 0.003 6.6E-08 64.2 9.7 115 390-565 57-173 (175)
476 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0019 4.2E-08 63.3 7.7 73 112-224 11-84 (141)
477 TIGR00231 small_GTP small GTP- 97.0 0.0034 7.4E-08 59.8 9.3 108 393-564 52-160 (161)
478 cd04155 Arl3 Arl3 subfamily. 97.0 0.0042 9.1E-08 61.8 10.2 113 392-565 59-172 (173)
479 COG5257 GCD11 Translation init 97.0 0.0057 1.2E-07 67.5 11.7 161 34-236 9-201 (415)
480 cd01879 FeoB Ferrous iron tran 97.0 0.005 1.1E-07 60.0 10.4 55 506-566 101-155 (158)
481 COG0480 FusA Translation elong 97.0 0.0067 1.5E-07 74.3 13.5 113 33-188 8-141 (697)
482 cd01881 Obg_like The Obg-like 97.0 0.0035 7.6E-08 62.2 9.2 95 423-567 77-176 (176)
483 KOG2655|consensus 96.9 0.0076 1.7E-07 68.1 12.1 146 34-221 20-201 (366)
484 TIGR00475 selB selenocysteine- 96.9 0.0039 8.5E-08 75.3 10.6 62 506-570 102-168 (581)
485 TIGR03348 VI_IcmF type VI secr 96.9 0.0028 6E-08 82.4 9.9 119 38-190 114-258 (1169)
486 KOG1143|consensus 96.9 0.003 6.4E-08 70.5 8.6 159 33-235 165-386 (591)
487 KOG0705|consensus 96.9 0.0024 5.1E-08 74.2 7.9 159 33-236 28-188 (749)
488 cd01891 TypA_BipA TypA (tyrosi 96.9 0.002 4.4E-08 66.1 6.7 50 506-559 117-173 (194)
489 KOG1547|consensus 96.9 0.0075 1.6E-07 64.1 10.7 39 8-57 30-68 (336)
490 PRK13796 GTPase YqeH; Provisio 96.9 0.005 1.1E-07 70.3 10.4 59 175-235 96-157 (365)
491 TIGR03596 GTPase_YlqF ribosome 96.9 0.0043 9.3E-08 68.0 9.4 55 175-236 48-102 (276)
492 TIGR02528 EutP ethanolamine ut 96.8 0.0016 3.5E-08 62.8 5.4 51 508-564 90-141 (142)
493 PRK00098 GTPase RsgA; Reviewed 96.8 0.0039 8.4E-08 69.2 8.5 83 423-566 83-165 (298)
494 cd01856 YlqF YlqF. Proteins o 96.8 0.0045 9.8E-08 62.6 8.1 55 175-236 46-100 (171)
495 PF00009 GTP_EFTU: Elongation 96.8 0.011 2.3E-07 60.7 10.9 59 506-567 122-186 (188)
496 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.0054 1.2E-07 67.7 9.2 81 423-566 81-162 (287)
497 TIGR03597 GTPase_YqeH ribosome 96.7 0.0042 9.2E-08 70.7 8.4 58 507-566 91-151 (360)
498 PRK01889 GTPase RsgA; Reviewed 96.7 0.0072 1.6E-07 68.8 10.2 83 111-233 111-193 (356)
499 KOG0082|consensus 96.7 0.027 5.8E-07 63.7 13.9 127 84-238 196-345 (354)
500 KOG0088|consensus 96.6 0.0091 2E-07 59.7 8.9 112 393-568 64-175 (218)
No 1
>KOG3929|consensus
Probab=100.00 E-value=9.2e-65 Score=521.97 Aligned_cols=275 Identities=32% Similarity=0.520 Sum_probs=244.4
Q ss_pred cccccCceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccc
Q psy11649 385 TQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSF 464 (890)
Q Consensus 385 ~~~~~kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~ 464 (890)
+..-+|||+|+|||||+.+..+||.+ |++-.+++.+++|+|+|||+|..+|.+||+-++.+|.|+|++..++++.+.
T Consensus 86 ~g~~~kdiaN~WELGgg~~~~~LLsV--Pit~~~l~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~- 162 (363)
T KOG3929|consen 86 KGHNPKDIANFWELGGGTSLLDLLSV--PITGDTLRTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNA- 162 (363)
T ss_pred cCCCchhHHHHHHhcCCccHHHHhcC--cccccchhhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH-
Confidence 34568999999999999999999999 999999999999999999999999999999999999999997766665333
Q ss_pred cccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc
Q psy11649 465 EHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS 544 (890)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs 544 (890)
+..++++++- ++
T Consensus 163 ---~L~E~mrqR~-~~---------------------------------------------------------------- 174 (363)
T KOG3929|consen 163 ---KLVEEMRQRI-WN---------------------------------------------------------------- 174 (363)
T ss_pred ---HHHHHHHHHH-HH----------------------------------------------------------------
Confidence 2223332221 00
Q ss_pred eeEeccCChhhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCccccccCCCcccccccccccceecccccccccc
Q psy11649 545 LLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSAL 624 (890)
Q Consensus 545 L~ftS~K~~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (890)
..|
T Consensus 175 --------------------------------------------------rvg--------------------------- 177 (363)
T KOG3929|consen 175 --------------------------------------------------RVG--------------------------- 177 (363)
T ss_pred --------------------------------------------------hcc---------------------------
Confidence 011
Q ss_pred ccCCCCCcceecccCCCcccccccccCCCCcccccchhhheeehhhcccCCccccccccccccccccccccccceeeccC
Q psy11649 625 GLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 704 (890)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (890)
T Consensus 178 -------------------------------------------------------------------------------- 177 (363)
T KOG3929|consen 178 -------------------------------------------------------------------------------- 177 (363)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcCcccccCccEEEEeeccccccCCChhhHHHHHHHHHHHHHHhCCeEEEeecCChhHHHHHHHHHHHhcccCC
Q psy11649 705 KYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 784 (890)
Q Consensus 705 ~~~~~~d~~~~~~~pvPl~ivg~KyD~f~~~d~e~~k~i~r~LR~iah~yGAsL~f~S~k~~~l~~~~r~~~~h~~F~~~ 784 (890)
-.|||.++++|+|||++|||+|||+|++||||+||++||||||+||+|||+|+|+|+|+++|.+++|++++|+|||++
T Consensus 178 --qd~~d~e~~dP~P~PV~IVgsKYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG~~ 255 (363)
T KOG3929|consen 178 --QDHPDHELIDPFPVPVVIVGSKYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGID 255 (363)
T ss_pred --cCCCchhhcCCCCCceEEeccchhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcCCc
Confidence 128899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeccCCceeecCCCCccccccCCcc-ccccCCCCchHHHHHHHhhccCCCCCCCccCCCCCCCCCCCCCCChhhh
Q psy11649 785 LASAVNFDYNKPIFVPFGTDSVASIEGTTQ-YVTAGSTSSLDKYKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVID 863 (890)
Q Consensus 785 ~~~~~~~D~~kpl~Ip~G~Ds~~~Ig~~~~-~~~~~~~~~~~~w~~~~~~~fp~~~~~~~~~~~~~dp~~d~~f~E~~ID 863 (890)
..+++++|+|+|+||.+|.|||++||.|+. ...+|+.+|.++|+++|...|||.+....+....+||+.||+|+|+.||
T Consensus 256 ~~~s~~vD~NkPlfi~~G~DS~~~IG~pp~~~nd~Ga~sp~elw~~~F~~l~PQk~~~~~kd~kttDPa~DP~FKE~~ID 335 (363)
T KOG3929|consen 256 KSKSICVDQNKPLFITAGLDSFGQIGSPPVPENDIGAHSPMELWKKVFEKLFPQKSINTLKDIKTTDPARDPQFKENEID 335 (363)
T ss_pred CCcceeecCCCceEEEeccccHhhcCCCCCCcccccccChHHHHHHHHHHhcChhhhhHHhhhcccCcccCccccccchH
Confidence 999999999999999999999999997644 3567888999999999999999987555555667999999999999999
Q ss_pred hhHHhhHHHHHHhhhccccccccccC
Q psy11649 864 SLRNQKLEQLDQMRREVDMKDKYRTR 889 (890)
Q Consensus 864 ~~r~qK~~Ele~~~~~~~~r~~~~~~ 889 (890)
+||.||++||++|+|+...|+||+.+
T Consensus 336 e~r~qK~~EL~~~~Rs~~~R~k~E~~ 361 (363)
T KOG3929|consen 336 EMRIQKDLELEQYKRSSSKRWKQEEL 361 (363)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhHhh
Confidence 99999999999999999999999754
No 2
>KOG3905|consensus
Probab=100.00 E-value=7.1e-60 Score=498.35 Aligned_cols=250 Identities=12% Similarity=0.173 Sum_probs=205.1
Q ss_pred cCCCCCChhhhhhhhhhccccccccccccccCCCCceeeccccccccccccCcccccCceeEEEEeCCCccccccccccc
Q psy11649 333 HSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFS 412 (890)
Q Consensus 333 ~~~~~~~~~~~~d~~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kdi~~vW~L~G~~~~~~Ll~~~~ 412 (890)
+.+-..+|-.||+.+= |+-=||-+--.+.-=||+- -|.++ .||||+|||+++|++||+|
T Consensus 61 n~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~------RDd~t------------r~~VWiLDGd~~h~~LLk~-- 119 (473)
T KOG3905|consen 61 NGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDED------RDDLT------------RCNVWILDGDLYHKGLLKF-- 119 (473)
T ss_pred CCCchhHHHHHhhccc-ccCCCCCcceEEEeccccc------chhhh------------hcceEEecCchhhhhHHhh--
Confidence 5556677788888776 6666664433222212221 13333 4669999999999999999
Q ss_pred ccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhc--------ccccccccccccc-----ccccc
Q psy11649 413 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKR--------GSFEHFRTADEHR-----DKGLI 479 (890)
Q Consensus 413 al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~ 479 (890)
||++.++.+++||+++|||+||++++||++|++++++|||++....+++ +.||+|-.+.+.. .+.+.
T Consensus 120 al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~ 199 (473)
T KOG3905|consen 120 ALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTV 199 (473)
T ss_pred cccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccc
Confidence 9999999999999999999999999999999999999999966544444 3477775554443 33344
Q ss_pred ccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccc------cCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649 480 RTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLF------ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP 553 (890)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~------~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~ 553 (890)
.....++.+++| +.+++||+|||||++|||||||++ .+|.+||+||||+|||+|||+|||+|||||+||+
T Consensus 200 ~~~~~de~~llP----L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~ 275 (473)
T KOG3905|consen 200 VGSSADEHVLLP----LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKET 275 (473)
T ss_pred ccCccccccccc----cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccc
Confidence 444567778888 789999999999999999999997 4677899999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCccccccCCCcccccccc
Q psy11649 554 GLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTE 608 (890)
Q Consensus 554 ~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~~~~~~~~~~~~ 608 (890)
+|||+|||||+||+|||+|++||+|+|+|+|||||||||.|||++ -+|..++++
T Consensus 276 KNidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI~I-l~En~~~vk 329 (473)
T KOG3905|consen 276 KNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKIDI-LHENFPTVK 329 (473)
T ss_pred cchHHHHHHHHHHhcCcccCCcceEeecceeEeccCCCccccchh-hhhcCCCCC
Confidence 999999999999999999999999999999999999999999999 555555443
No 3
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=100.00 E-value=2.6e-49 Score=452.88 Aligned_cols=204 Identities=18% Similarity=0.255 Sum_probs=172.5
Q ss_pred cCceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhc-------
Q psy11649 389 TADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKR------- 461 (890)
Q Consensus 389 ~kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~------- 461 (890)
+.++||||+|||+++|.+||+| ||+.+++++++||||||||+||++|++|++|++++++|++++....+++
T Consensus 71 d~~rl~vw~L~g~~~~~~LLk~--~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl 148 (472)
T PF05783_consen 71 DLARLNVWELDGDPSHSDLLKF--ALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKL 148 (472)
T ss_pred cCceeeEEEcCCCcchHhHhcc--cCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4567899999999999999999 8999999999999999999999999999999999999999965433322
Q ss_pred -ccccccccccccc-----ccccccc-CCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC------CChhHHH
Q psy11649 462 -GSFEHFRTADEHR-----DKGLIRT-FPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN------LEPNKKR 528 (890)
Q Consensus 462 -~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~------~~~E~~d 528 (890)
..+|+|..+.+.. .++.... ...++.+.+| +++++|++||||||||||||+|.+.. +.+||+|
T Consensus 149 ~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lp----l~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~D 224 (472)
T PF05783_consen 149 ERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLP----LGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFD 224 (472)
T ss_pred HHHHHHhhhccccccccCcccccccccccccccccCC----CCCcccccccCcceEEEEecccHHHHHhhhcccchhhHH
Confidence 2355553332221 1110111 1122334445 78999999999999999999999854 5577899
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCccccccC
Q psy11649 529 IAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEG 598 (890)
Q Consensus 529 ~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~~ 598 (890)
||||+||+|||+|||||||||+|+++||++||+||+||+||++|+.+++++++|+||||||||||+||++
T Consensus 225 fIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~f~~~~~vv~~d~ifIP~GwDs~~kI~i 294 (472)
T PF05783_consen 225 FIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFPFKTPAQVVERDAIFIPAGWDSWGKIRI 294 (472)
T ss_pred HHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCCCCCCceeecccccccCCCCCCHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988
No 4
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.97 E-value=1.2e-30 Score=299.32 Aligned_cols=252 Identities=23% Similarity=0.321 Sum_probs=206.5
Q ss_pred cchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccc
Q psy11649 3 PKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMK 82 (890)
Q Consensus 3 ~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k 82 (890)
.++||+.|++++..+.+.+ ...++.|+|+|+.++|||||+.+|.+. +.++++.|++|.|.++.....+.
T Consensus 3 ~~~lW~siL~ev~~~~~~~----------~~~~k~vlvlG~~~~GKttli~~L~~~-e~~~~~~aLeYty~~v~d~~~dd 71 (472)
T PF05783_consen 3 KENLWSSILSEVSNSSSTK----------LPSEKSVLVLGDKGSGKTTLIARLQGI-EDPKKGLALEYTYLDVKDEDRDD 71 (472)
T ss_pred cccHHHHHHHHHHhhcccc----------CCCCceEEEEeCCCCchHHHHHHhhcc-CCCCCCcccceEEEeeccCcCCc
Confidence 4689999999997643222 234689999999999999999998764 45789999999999887543333
Q ss_pred -eEEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649 83 -DICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 160 (890)
Q Consensus 83 -~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~ 160 (890)
.+++||.++|...+..|+... +.+++. ..+||||+|+++||.+++.|..|++.++++++++....+.+..+++++
T Consensus 72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~---~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl 148 (472)
T PF05783_consen 72 LARLNVWELDGDPSHSDLLKFALTPENLP---NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKL 148 (472)
T ss_pred CceeeEEEcCCCcchHhHhcccCCccccc---ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 389999999998999999888 777888 899999999999999999999999999999988643222222222211
Q ss_pred -------------c---------------ccc-----ccccccccCCCCcEEEEeecccCCCC------CCcchhhhhHH
Q psy11649 161 -------------T---------------ADE-----HRDKGLIRTFPVPLILIGGKYDLFEN------LEPNKKRIAVQ 201 (890)
Q Consensus 161 -------------~---------------~~~-----~~d~~li~~l~IPiIVVgNK~Dl~~d------~d~e~r~~i~~ 201 (890)
. .++ .++..+..++|+|++|||+|+|.+.. +.+++.+++++
T Consensus 149 ~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq 228 (472)
T PF05783_consen 149 ERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQ 228 (472)
T ss_pred HHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHH
Confidence 0 001 02345567899999999999997642 34567789999
Q ss_pred HHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccC
Q psy11649 202 CLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGT 268 (890)
Q Consensus 202 ~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~p 268 (890)
.+|.+|.+||+++||||++++.|++.|+.||.|++|+.++.....+...+.+|||+|||++++|+..
T Consensus 229 ~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~f~~~~~vv~~d~ifIP~GwDs~~kI~il 295 (472)
T PF05783_consen 229 YLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFPFKTPAQVVERDAIFIPAGWDSWGKIRIL 295 (472)
T ss_pred HHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCCCCCCceeecccccccCCCCCCHHhcCcc
Confidence 9999999999999999999999999999999999999999888999999999999999999999865
No 5
>KOG3905|consensus
Probab=99.97 E-value=1.8e-30 Score=275.60 Aligned_cols=251 Identities=17% Similarity=0.262 Sum_probs=205.2
Q ss_pred chHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccce
Q psy11649 4 KSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKD 83 (890)
Q Consensus 4 ~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~ 83 (890)
++||+.|+.++..+.+.. -+...+|+|+|+.++|||||+.+|.+-+ .++++-|++|.|..+.....+..
T Consensus 31 qnlWs~iLsev~T~~~sk----------lpsgk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~ 99 (473)
T KOG3905|consen 31 QNLWSEILSEVSTRTRSK----------LPSGKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDL 99 (473)
T ss_pred HHHHHHHHHHhhhccccc----------CCCCCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhh
Confidence 579999999997765533 2335689999999999999999988754 78899999999987775443333
Q ss_pred -EEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccc---
Q psy11649 84 -ICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH--- 158 (890)
Q Consensus 84 -~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~--- 158 (890)
++++|-+.|......++... ...++. -..||++.|+++||.++++|..|...++++++++....+....+++
T Consensus 100 tr~~VWiLDGd~~h~~LLk~al~ats~a---etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~ 176 (473)
T KOG3905|consen 100 TRCNVWILDGDLYHKGLLKFALPATSLA---ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLE 176 (473)
T ss_pred hhcceEEecCchhhhhHHhhcccccCcc---ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999988878888776 444466 7799999999999999999999999999999876542211111111
Q ss_pred -----cc-------------------ccccc-----cccccccCCCCcEEEEeecccCCC------CCCcchhhhhHHHH
Q psy11649 159 -----FR-------------------TADEH-----RDKGLIRTFPVPLILIGGKYDLFE------NLEPNKKRIAVQCL 203 (890)
Q Consensus 159 -----~~-------------------~~~~~-----~d~~li~~l~IPiIVVgNK~Dl~~------d~d~e~r~~i~~~l 203 (890)
.+ +.++| -+..++.++|+|++||++|||.+. ++.+++.++|+..+
T Consensus 177 k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~l 256 (473)
T KOG3905|consen 177 KDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHL 256 (473)
T ss_pred HHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHH
Confidence 11 12222 123567899999999999999832 45667889999999
Q ss_pred HHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccC
Q psy11649 204 RYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGT 268 (890)
Q Consensus 204 r~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~p 268 (890)
|+||.+||+.++|||+|+..||+.|..||.|+.|+.++...+.+.+.+++|||+|||+..+|+..
T Consensus 257 RkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI~Il 321 (473)
T KOG3905|consen 257 RKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKIDIL 321 (473)
T ss_pred HHHHHHcCceeEEeecccccchHHHHHHHHHHhcCcccCCcceEeecceeEeccCCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 6
>KOG3929|consensus
Probab=99.96 E-value=6.7e-30 Score=264.45 Aligned_cols=270 Identities=31% Similarity=0.518 Sum_probs=229.7
Q ss_pred chHHHHHHHHhccCCCCCCCCccc-cccCCccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEecccc
Q psy11649 4 KSLKDIAIELAHGKHPSPSSSEVH-KIDIQSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVM 81 (890)
Q Consensus 4 ~~lw~~il~~v~~~~~~r~~~~~~-~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~ 81 (890)
+++|..+-...+.+.-....++|+ .....+.+..|++.|+.++ |++|+++..+++ ...|+.+++|+|.++.+.+..
T Consensus 13 e~~~~~a~a~~~~~DinG~~~deqL~e~~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~ 90 (363)
T KOG3929|consen 13 ETLWEIAKAEVEKRDINGSEGDEQLAEIAEKFEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNP 90 (363)
T ss_pred HHHHHHhhccccccccccchhhHHHHHhhccceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCc
Confidence 444554444333333233333222 3667788999999998876 999999998754 667899999999999976656
Q ss_pred ceEEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhh-----hhccc
Q psy11649 82 KDICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR-----EKRGS 155 (890)
Q Consensus 82 k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~-----~~~~~ 155 (890)
++..++|+++|.....+++++. +.++++ .-.+|+|+|+|+|..+|..++..++.++.+.++..... ..++.
T Consensus 91 kdiaN~WELGgg~~~~~LLsVPit~~~l~---~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~ 167 (363)
T KOG3929|consen 91 KDIANFWELGGGTSLLDLLSVPITGDTLR---TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEE 167 (363)
T ss_pred hhHHHHHHhcCCccHHHHhcCcccccchh---hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 6789999999999999999999 777778 88999999999999999999999999998887655432 33334
Q ss_pred ccccc---ccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHH
Q psy11649 156 FEHFR---TADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDIL 232 (890)
Q Consensus 156 l~~~~---~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I 232 (890)
|+++. .+++++|..+++++++|++|||.|+|.+++++++.|+.+++.+|.+|+.||+.+++.|+|.....+.+++.|
T Consensus 168 mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i 247 (363)
T KOG3929|consen 168 MRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVI 247 (363)
T ss_pred HHHHHHHhcccCCCchhhcCCCCCceEEeccchhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhH
Confidence 66666 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccccccCCCCcccccCCCccccccccCCCCCCCCccccccc
Q psy11649 233 NHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRG 282 (890)
Q Consensus 233 ~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl~r~~~~~~~~~~~ 282 (890)
+|+.|+....+..++|+++|++|.+|.|||++||.| +++.+++++.
T Consensus 248 ~HlaFG~~~~~s~~vD~NkPlfi~~G~DS~~~IG~p----p~~~nd~Ga~ 293 (363)
T KOG3929|consen 248 NHLAFGIDKSKSICVDQNKPLFITAGLDSFGQIGSP----PVPENDIGAH 293 (363)
T ss_pred HHhhcCCcCCcceeecCCCceEEEeccccHhhcCCC----CCCccccccc
Confidence 999999999999999999999999999999999999 9999998863
No 7
>KOG0084|consensus
Probab=99.95 E-value=1.6e-27 Score=239.90 Aligned_cols=163 Identities=18% Similarity=0.298 Sum_probs=144.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccc-eEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMK-DICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k-~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
...+||+|+|++|||||+|+.||.+. .+.+..|+|+||...+.. ...+ .+++||||+||++|+.+...| |+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e--~~gk~iKlQIWDTAGQERFrtit~sy----YR 80 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVE--LDGKTIKLQIWDTAGQERFRTITSSY----YR 80 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEee--ecceEEEEEeeeccccHHHhhhhHhh----cc
Confidence 45799999999999999999999996 468899999997644333 2233 399999999999999999999 55
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++++||+|||+|+.+|| +++..|+++++++... ++|.++||||+|+.
T Consensus 81 --~ahGii~vyDiT~~~SF-~~v~~Wi~Ei~~~~~~-----------------------------~v~~lLVGNK~Dl~- 127 (205)
T KOG0084|consen 81 --GAHGIIFVYDITKQESF-NNVKRWIQEIDRYASE-----------------------------NVPKLLVGNKCDLT- 127 (205)
T ss_pred --CCCeEEEEEEcccHHHh-hhHHHHHHHhhhhccC-----------------------------CCCeEEEeeccccH-
Confidence 69999999999999999 9999999999887654 68999999999995
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+++.+..++++.|+..++.+ +++||||++.|++..+..|.+.+..
T Consensus 128 ----~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 128 ----EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred ----hheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 58999999999999999999 9999999999999999999888754
No 8
>KOG0078|consensus
Probab=99.94 E-value=8.4e-26 Score=230.41 Aligned_cols=165 Identities=19% Similarity=0.262 Sum_probs=144.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+++|+++||||+|+.+|..+ ...+..|+|+||...+..... ...++++|||+||++|..+...| |+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g-~~i~lQiWDtaGQerf~ti~~sY----yr 83 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG-KKIKLQIWDTAGQERFRTITTAY----YR 83 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC-eEEEEEEEEcccchhHHHHHHHH----Hh
Confidence 456799999999999999999999986 457789999998765555433 24499999999999999999999 44
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+|+++++|||+++.+|| +++..|+..|.++... ++|++|||||+|+.
T Consensus 84 --gA~gi~LvyDitne~Sf-eni~~W~~~I~e~a~~-----------------------------~v~~~LvGNK~D~~- 130 (207)
T KOG0078|consen 84 --GAMGILLVYDITNEKSF-ENIRNWIKNIDEHASD-----------------------------DVVKILVGNKCDLE- 130 (207)
T ss_pred --hcCeeEEEEEccchHHH-HHHHHHHHHHHhhCCC-----------------------------CCcEEEeecccccc-
Confidence 69999999999999999 9999999999886543 79999999999995
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
++|++..+..+++|..+|+.|+|||||+|.||++.+-.+...+..
T Consensus 131 ----~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 131 ----EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ----ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999998887777653
No 9
>KOG0094|consensus
Probab=99.93 E-value=2.8e-25 Score=222.92 Aligned_cols=168 Identities=18% Similarity=0.261 Sum_probs=144.0
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
..+.+||+|+|+.+|||||||+||+.+ +.+|.+|+|+||-..+..... ...++++|||+||++|+.+++.| ++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d-~~vrLQlWDTAGQERFrslipsY----~R 93 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSY----IR 93 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcC-cEEEEEEEecccHHHHhhhhhhh----cc
Confidence 445599999999999999999999986 568999999997654443221 23489999999999999999999 33
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++.++|+|||+++..|| ++..+|++.++..... .++-+++||||.||.
T Consensus 94 --ds~vaviVyDit~~~Sf-e~t~kWi~dv~~e~gs----------------------------~~viI~LVGnKtDL~- 141 (221)
T KOG0094|consen 94 --DSSVAVIVYDITDRNSF-ENTSKWIEDVRRERGS----------------------------DDVIIFLVGNKTDLS- 141 (221)
T ss_pred --CCeEEEEEEeccccchH-HHHHHHHHHHHhccCC----------------------------CceEEEEEccccccc-
Confidence 59999999999999999 9999999988764322 247899999999996
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 240 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~ 240 (890)
++|++...+....|+.+|+.|++|||+.|.||++++.-|...+++..
T Consensus 142 ----dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 142 ----DKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred ----chhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 48999999999999999999999999999999999999998886643
No 10
>KOG0092|consensus
Probab=99.93 E-value=1.5e-25 Score=225.01 Aligned_cols=164 Identities=18% Similarity=0.307 Sum_probs=141.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEecccc-ceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVM-KDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~-k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
..++||+|+|+.|||||||+-||..+.+ ...||+|..|. ++.....+ ..++.||||+|+++|.++.+.| |+
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~--tktv~~~~~~ikfeIWDTAGQERy~slapMY----yR 76 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFL--TKTVTVDDNTIKFEIWDTAGQERYHSLAPMY----YR 76 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEE--EEEEEeCCcEEEEEEEEcCCcccccccccce----ec
Confidence 4578999999999999999999998754 44899998864 34322222 3489999999999999999999 55
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++|+|||+++.+|| ..+..|++++++... .++-+.|||||+|+.
T Consensus 77 --gA~AAivvYDit~~~SF-~~aK~WvkeL~~~~~-----------------------------~~~vialvGNK~DL~- 123 (200)
T KOG0092|consen 77 --GANAAIVVYDITDEESF-EKAKNWVKELQRQAS-----------------------------PNIVIALVGNKADLL- 123 (200)
T ss_pred --CCcEEEEEEecccHHHH-HHHHHHHHHHHhhCC-----------------------------CCeEEEEecchhhhh-
Confidence 69999999999999999 999999999887543 257889999999996
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
+.|++..+++..+|...|+.+++||||++.|+++++..|...++..
T Consensus 124 ----~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 124 ----ERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred ----hcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCc
Confidence 3799999999999999999999999999999999999999998543
No 11
>KOG0098|consensus
Probab=99.92 E-value=6.9e-25 Score=218.53 Aligned_cols=163 Identities=19% Similarity=0.231 Sum_probs=142.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+|++++|+.|||||+|+.||+++.+ .+..|+|+||-+..... ...+.+++||||+|+++|.++...| |+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~sy----Yr-- 77 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSY----YR-- 77 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHH----hc--
Confidence 468999999999999999999999754 55689999987644443 2234499999999999999999999 55
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++.++|+|||+++.++| +.|..|+.+++++... ++.++|+|||+||.
T Consensus 78 ~a~GalLVydit~r~sF-~hL~~wL~D~rq~~~~-----------------------------NmvImLiGNKsDL~--- 124 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESF-NHLTSWLEDARQHSNE-----------------------------NMVIMLIGNKSDLE--- 124 (216)
T ss_pred cCcceEEEEEccchhhH-HHHHHHHHHHHHhcCC-----------------------------CcEEEEEcchhhhh---
Confidence 69999999999999999 9999999999887533 57899999999995
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
..|.+..++.+.||+++|..+++|||++++|+++++.-+.+.++.
T Consensus 125 --~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 125 --ARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred --ccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998888888765
No 12
>KOG1673|consensus
Probab=99.92 E-value=2.4e-25 Score=215.44 Aligned_cols=134 Identities=25% Similarity=0.447 Sum_probs=121.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+|||+ +++.++ ||..+....+++||+|||+|.+| +|+..||+++|+.++.
T Consensus 71 fSIwdlgG~---~~~~n~---lPiac~dsvaIlFmFDLt~r~TL-nSi~~WY~QAr~~Nkt------------------- 124 (205)
T KOG1673|consen 71 FSIWDLGGQ---REFINM---LPIACKDSVAILFMFDLTRRSTL-NSIKEWYRQARGLNKT------------------- 124 (205)
T ss_pred EEEEecCCc---Hhhhcc---CceeecCcEEEEEEEecCchHHH-HHHHHHHHHHhccCCc-------------------
Confidence 489999999 455666 44456666699999999999999 9999999999997775
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.|| |+||||||.|-+|++|.+..|..+.|+||..|.|+|||||+..
T Consensus 125 ---------------------------------AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~ 170 (205)
T KOG1673|consen 125 ---------------------------------AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH 170 (205)
T ss_pred ---------------------------------cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence 255 7899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCCCCcceecccCCceEe
Q psy11649 553 PGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFV 586 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifI 586 (890)
++|+++++|+++.++|++|++.|....-+|||..
T Consensus 171 sINv~KIFK~vlAklFnL~~ti~~~~~iGdPild 204 (205)
T KOG1673|consen 171 SINVQKIFKIVLAKLFNLPWTIPEILTIGDPILD 204 (205)
T ss_pred cccHHHHHHHHHHHHhCCceecccccccCccccc
Confidence 9999999999999999999999999999999863
No 13
>KOG0394|consensus
Probab=99.92 E-value=9.4e-25 Score=217.27 Aligned_cols=172 Identities=15% Similarity=0.274 Sum_probs=144.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccce-EEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKD-ICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~-~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
+..-.||+++|++|||||||+|++.+++ ..|+.|+|.+|. ++....+++. .++||||+|+++|.+|-..+ |
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFl--tKev~Vd~~~vtlQiWDTAGQERFqsLg~aF----Y 79 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFL--TKEVQVDDRSVTLQIWDTAGQERFQSLGVAF----Y 79 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhhe--eeEEEEcCeEEEEEEEecccHHHhhhcccce----e
Confidence 4457899999999999999999999974 588999999965 4443333333 89999999999999998777 5
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++++|||+++++|| ++|..|.+++-.+... -.+...|+||+|||+|+-
T Consensus 80 R--gaDcCvlvydv~~~~Sf-e~L~~Wr~EFl~qa~~-------------------------~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 80 R--GADCCVLVYDVNNPKSF-ENLENWRKEFLIQASP-------------------------QDPETFPFVILGNKIDVD 131 (210)
T ss_pred c--CCceEEEEeecCChhhh-ccHHHHHHHHHHhcCC-------------------------CCCCcccEEEEcccccCC
Confidence 6 79999999999999999 9999999977665432 234479999999999984
Q ss_pred CCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFSSH 240 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~~~ 240 (890)
. ...|++....++.+|...| ++|||||||...|++..++.+.+.++...
T Consensus 132 ~---~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 132 G---GKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred C---CccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 2 1248999999999999986 88999999999999999999999986543
No 14
>KOG0079|consensus
Probab=99.92 E-value=7.8e-25 Score=210.31 Aligned_cols=164 Identities=18% Similarity=0.306 Sum_probs=141.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
.-++.+++|++|||||||+.+|... .++|..|+|+||...+.. .+....+++|||++|+++|+.+.+.| |+
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~-i~G~~VkLqIwDtAGqErFrtitsty----yr-- 79 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVD-INGDRVKLQIWDTAGQERFRTITSTY----YR-- 79 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEee-cCCcEEEEEEeecccHHHHHHHHHHH----cc--
Confidence 4578899999999999999999986 568889999997654433 23345599999999999999999999 44
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+.+++|+|||+||.+|| .+..+|+++++..+. .+|-++||||.|..
T Consensus 80 gthgv~vVYDVTn~ESF-~Nv~rWLeei~~ncd------------------------------sv~~vLVGNK~d~~--- 125 (198)
T KOG0079|consen 80 GTHGVIVVYDVTNGESF-NNVKRWLEEIRNNCD------------------------------SVPKVLVGNKNDDP--- 125 (198)
T ss_pred CCceEEEEEECcchhhh-HhHHHHHHHHHhcCc------------------------------cccceecccCCCCc---
Confidence 69999999999999999 999999998887554 38999999999984
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 240 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~ 240 (890)
+.|.+...+++.+|...|+.+|+||||+++|++.++.-|........
T Consensus 126 --~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 126 --ERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred --cceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999998877765433
No 15
>KOG0087|consensus
Probab=99.91 E-value=1.9e-24 Score=219.71 Aligned_cols=167 Identities=21% Similarity=0.326 Sum_probs=146.0
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccce-EEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKD-ICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~-~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
-...+||+++|+++||||-|+.||+.+++ +.++|+|++|. ++....+++. +++||||+||++|+.+...| |
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~--t~t~~vd~k~vkaqIWDTAGQERyrAitSaY----Y 84 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFA--TRTVNVDGKTVKAQIWDTAGQERYRAITSAY----Y 84 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEE--eeceeecCcEEEEeeecccchhhhccccchh----h
Confidence 45689999999999999999999998754 66899999965 4443333343 99999999999999999999 5
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++.++++|||+|+..+| +++.+|+.+++++.+. .+++++||||+||.
T Consensus 85 r--gAvGAllVYDITr~~Tf-env~rWL~ELRdhad~-----------------------------nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 85 R--GAVGALLVYDITRRQTF-ENVERWLKELRDHADS-----------------------------NIVIMLVGNKSDLN 132 (222)
T ss_pred c--ccceeEEEEechhHHHH-HHHHHHHHHHHhcCCC-----------------------------CeEEEEeecchhhh
Confidence 5 79999999999999999 8999999999987644 79999999999995
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHL 241 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~ 241 (890)
..|.+..++.+.+|.+.|..+++|||.++.|++..++.+...+|....
T Consensus 133 -----~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 133 -----HLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred -----hccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999999999999988888876443
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=2.7e-23 Score=213.73 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=134.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+||+|+|+.|||||||+.+|.++. ..+.++++.+|....... ......+++|||+|++++..+...+ ++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~----~~-- 77 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSY----SR-- 77 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHH----hc--
Confidence 45899999999999999999999863 456678888864333222 2223489999999999999988887 23
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|||++++++| +++..|++.+.++. .++|++|||||+|+.
T Consensus 78 ~ad~illVfD~t~~~Sf-~~~~~w~~~i~~~~------------------------------~~~piilVGNK~DL~--- 123 (189)
T cd04121 78 GAQGIILVYDITNRWSF-DGIDRWIKEIDEHA------------------------------PGVPKILVGNRLHLA--- 123 (189)
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECccch---
Confidence 59999999999999999 89999999886532 158999999999994
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+++.+..++++.+|..+++.+++|||++|.|++++++.|...+..
T Consensus 124 --~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 124 --FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred --hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 356677888999999999999999999999999999999887753
No 17
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.90 E-value=6.7e-23 Score=209.02 Aligned_cols=168 Identities=24% Similarity=0.420 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++. .++.||+|.+|........ .....++|||++|++++..+...+ ++ ++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~~~~~~----~~--~a 73 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-GTEITFSIWDLGGQREFINMLPLV----CN--DA 73 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCchhHHHhhHHH----Cc--CC
Confidence 489999999999999999999864 4688999988643222221 223489999999999998888777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|||++++.+| +++..|+..+++.. ...+| ++||||+|+..+.+.
T Consensus 74 ~~iilv~D~t~~~s~-~~i~~~~~~~~~~~-----------------------------~~~~p-ilVgnK~Dl~~~~~~ 122 (182)
T cd04128 74 VAILFMFDLTRKSTL-NSIKEWYRQARGFN-----------------------------KTAIP-ILVGTKYDLFADLPP 122 (182)
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCE-EEEEEchhccccccc
Confidence 999999999999998 88899998776531 12467 678999999644332
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCc
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHL 241 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~ 241 (890)
+.+..+....+++|..+++++++|||++|.|++++++.+...+++.+.
T Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 123 EEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLPL 170 (182)
T ss_pred hhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence 333344567888999999999999999999999999999988876443
No 18
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.90 E-value=5.1e-23 Score=213.85 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=130.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
.|+++|+.|||||||+++|+.+. ..+.+|++.+|....... ......++||||+|++++..+...+ ++ +++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y----~~--~ad 74 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAY----YR--SAK 74 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHH----hc--CCC
Confidence 69999999999999999999864 466789998875433332 1223489999999999999999888 33 699
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++|+|||++++.|| +++..|++.+.+.. ..++|++|||||+|+. .
T Consensus 75 ~iIlVfDvtd~~Sf-~~l~~w~~~i~~~~-----------------------------~~~~piilVgNK~DL~-----~ 119 (202)
T cd04120 75 GIILVYDITKKETF-DDLPKWMKMIDKYA-----------------------------SEDAELLLVGNKLDCE-----T 119 (202)
T ss_pred EEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCcEEEEEECcccc-----c
Confidence 99999999999999 88999988765431 1258999999999985 2
Q ss_pred hhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 195 KKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 195 ~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+++...+..++|.++ ++.+++|||++|.|++++++.|...+..
T Consensus 120 ~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 120 DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 5666777888899885 7899999999999999999999887643
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.90 E-value=6.2e-23 Score=208.66 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=128.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+.+|+.+. .++.||++..|. ..........+++||||+|++++..+...+ ++ ++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~--~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~----~~--~a 73 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVSVDGNTVNLGLWDTAGQEDYNRLRPLS----YR--GA 73 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE--EEEEECCEEEEEEEEECCCCccccccchhh----cC--CC
Confidence 589999999999999999999874 467899986653 222112223489999999999999888877 33 59
Q ss_pred cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC-
Q psy11649 114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL- 191 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~- 191 (890)
+++|+|||+++++|| +++ ..|+..+++.. ..+|++|||||+|+.+..
T Consensus 74 ~~~ilvyd~~~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~piilvgnK~Dl~~~~~ 122 (176)
T cd04133 74 DVFVLAFSLISRASY-ENVLKKWVPELRHYA------------------------------PNVPIVLVGTKLDLRDDKQ 122 (176)
T ss_pred cEEEEEEEcCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEeChhhccChh
Confidence 999999999999999 666 68998775431 158999999999995310
Q ss_pred ----CcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 ----EPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 ----d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+...+.+..+++.++|..+++ .+++|||++|.||+++++.+...+
T Consensus 123 ~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 123 YLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 111245778889999999998 599999999999999999888765
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.90 E-value=7.5e-23 Score=209.07 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=130.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+||+++|++|||||||+++|+++. ..+.||++.+|. ...........++||||+|++++..+...+ ++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~--~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~----~~-- 75 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPYYDNVRPLS----YP-- 75 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE--EEEEECCEEEEEEEEECCCchhhHhhhhhh----cC--
Confidence 46899999999999999999999874 567889987653 222222223489999999999998888777 33
Q ss_pred cCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++|+|||++++.|| +++ ..|.+.+++.. ..+|++|||||+|+.++
T Consensus 76 ~ad~~ilvyDit~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~piilVgNK~DL~~~ 124 (182)
T cd04172 76 DSDAVLICFDISRPETL-DSVLKKWKGEIQEFC------------------------------PNTKMLLVGCKSDLRTD 124 (182)
T ss_pred CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHC------------------------------CCCCEEEEeEChhhhcC
Confidence 69999999999999999 665 79998886632 14899999999998532
Q ss_pred CC-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCC-HHHHHHHHHHHH
Q psy11649 191 LE-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGL-VKRTRDILNHYA 236 (890)
Q Consensus 191 ~d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~n-Id~Lk~~I~~~l 236 (890)
.. ..++.+..++++++|+++|+ +|+||||+++.| ++++++.+...+
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 125 LTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred hhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 11 01245778899999999996 899999999998 999988776643
No 21
>KOG0093|consensus
Probab=99.90 E-value=2.1e-23 Score=200.39 Aligned_cols=163 Identities=18% Similarity=0.300 Sum_probs=138.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+|++++|+..||||||+.++++.. ..+..|+|++|..++.. ......+++||||+|+++++.+...+ |+
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvy-r~~kRiklQiwDTagqEryrtiTTay----yR- 92 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVY-RSDKRIKLQIWDTAGQERYRTITTAY----YR- 92 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEee-ecccEEEEEEEecccchhhhHHHHHH----hh-
Confidence 345799999999999999999999964 46678999996543332 22233489999999999999999888 44
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++|+|||++|.+|| ++++.|.-.|+.+.. .++|+|+||||||+.
T Consensus 93 -gamgfiLmyDitNeeSf-~svqdw~tqIktysw-----------------------------~naqvilvgnKCDmd-- 139 (193)
T KOG0093|consen 93 -GAMGFILMYDITNEESF-NSVQDWITQIKTYSW-----------------------------DNAQVILVGNKCDMD-- 139 (193)
T ss_pred -ccceEEEEEecCCHHHH-HHHHHHHHHheeeec-----------------------------cCceEEEEecccCCc--
Confidence 69999999999999999 999999987765432 379999999999984
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
++|.+..+..+.++.++|..+|++|||.+.|++.+++.+...+-
T Consensus 140 ---~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 140 ---SERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred ---cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999988877764
No 22
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=2.1e-22 Score=207.66 Aligned_cols=166 Identities=14% Similarity=0.243 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|+|++|||||||+++|+++. ..+.||++.+|..............+++|||+|++++..+...+ ++ ++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~----~~--~a 74 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVY----YR--GA 74 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHH----hC--CC
Confidence 589999999999999999999863 46789999886533322221223489999999999998888777 23 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|||++++.+| +.+..|+..+...... .....+|++|||||+|+..
T Consensus 75 ~~~ilv~D~t~~~s~-~~~~~~~~~i~~~~~~-------------------------~~~~~~piilv~NK~Dl~~---- 124 (201)
T cd04107 75 VGAIIVFDVTRPSTF-EAVLKWKADLDSKVTL-------------------------PNGEPIPCLLLANKCDLKK---- 124 (201)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhhcc-------------------------cCCCCCcEEEEEECCCccc----
Confidence 999999999999998 8889998877654321 1123689999999999952
Q ss_pred chhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 194 NKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+....+++.+++..++ +.+++|||++|.|++++++.|...+..
T Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 125 -RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred -ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 35566778899999999 689999999999999999999988764
No 23
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.90 E-value=1.9e-22 Score=210.54 Aligned_cols=166 Identities=18% Similarity=0.297 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++ ...+.||+++++..............++|||++|+..+..+...+ ++ ++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~----~~--~a 74 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKY----IY--GA 74 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHH----hh--cC
Confidence 48999999999999999999986 357789999887443333222223589999999999888888887 23 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|||++++++| +++..|+..+.+.... ...++|+++||||+|+.
T Consensus 75 d~iilV~D~t~~~s~-~~~~~w~~~l~~~~~~--------------------------~~~~~piilVgNK~DL~----- 122 (215)
T cd04109 75 HAVFLVYDVTNSQSF-ENLEDWYSMVRKVLKS--------------------------SETQPLVVLVGNKTDLE----- 122 (215)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhccc--------------------------cCCCceEEEEEECcccc-----
Confidence 999999999999998 8899999988765422 11257899999999995
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
+.+.+....++.++..+++.++++||++|.|++++++.|...+++.
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 123 HNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 2566677788999999999999999999999999999999887653
No 24
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.7e-23 Score=241.92 Aligned_cols=261 Identities=17% Similarity=0.101 Sum_probs=181.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCccceeEEEEEEeccccce-EEEEEEcCCCcch------hhHHhhh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK---NDTPKPTLALEYIYARKSGKTVMKD-ICHLWELGSGTSR------LEVASLF 103 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~---~~~~kptigvdY~f~~~~g~~~~k~-~l~IwDlpG~~~~------~~Li~~~ 103 (890)
+..+|+++|+||||||||+|+|||. .+|+ |++++| ++.|....+. .++|.|+||.|++ +.+...|
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNw-pGvTVE----kkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ 76 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNW-PGVTVE----KKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDF 76 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCC-CCeeEE----EEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHH
Confidence 3567999999999999999999994 4677 999999 7776444433 7999999999987 4455555
Q ss_pred -hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 104 -SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 104 -r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
.+ .++|++|-|+|.+|.++ +|..-+|. ..+++|++++.
T Consensus 77 ll~-----~~~D~ivnVvDAtnLeR---nLyltlQL---------------------------------lE~g~p~ilaL 115 (653)
T COG0370 77 LLE-----GKPDLIVNVVDATNLER---NLYLTLQL---------------------------------LELGIPMILAL 115 (653)
T ss_pred Hhc-----CCCCEEEEEcccchHHH---HHHHHHHH---------------------------------HHcCCCeEEEe
Confidence 21 13899999999999987 77777762 23589999999
Q ss_pred ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccc
Q psy11649 183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSV 262 (890)
Q Consensus 183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~ 262 (890)
||+|.. +++++..+..++.+.+|+++++|||++|.|++++++.+....-.... +..+..|.+-.
T Consensus 116 Nm~D~A------~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~~----------~~~~~y~~~ie 179 (653)
T COG0370 116 NMIDEA------KKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKTT----------PREVDYGEEIE 179 (653)
T ss_pred ccHhhH------HhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccccc----------ccccccchHHH
Confidence 999985 78899999999999999999999999999999999888776522111 22223333332
Q ss_pred cccccCCCCCCCCccccccccccccchhHHHhhccccc-----chhhccCChhhhHHHHHHHHh--HHHhhccceeccCC
Q psy11649 263 ASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWIEG-----TVTARNLEPNKKRIAVQCLRY--LAHVNGASLLFHSS 335 (890)
Q Consensus 263 ~~I~~pl~r~~~~~~~~~~~~~~~~~~~f~~~~~w~~~-----~~~~~~~~~~~~~~~e~~~ry--~~~~~~~~~~~~~~ 335 (890)
+.++.-. -.+...++.+....+ +..+.+....-++ .......+... ...+...|| +.+++.+++.....
T Consensus 180 ~~i~~l~--~~~~~~r~lai~lL~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i~~~ry~~~~~i~~~~v~~~~~ 255 (653)
T COG0370 180 EEIKELE--ALSEDPRWLAIKLLE-DDELVEAVLKEPEKRVEELLEELSEEEGH-LLLIADARYALIERILRSVVKQEEE 255 (653)
T ss_pred HHHHHHH--hhcchhHHHHHHHhc-ChHHHHHHhccchhhHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHhccccc
Confidence 2232210 012222555555554 4444332221111 10000000000 122445677 99999999986655
Q ss_pred CCCChhhhhhhhhhccccccccccc
Q psy11649 336 LDPGLVKRTRDILNHYAFSSHLASA 360 (890)
Q Consensus 336 ~~~~~~~~~d~~l~h~~~~~~~~~~ 360 (890)
...++++++|++|+||++|--.|-.
T Consensus 256 ~~~slt~~iD~vllh~~lG~pifl~ 280 (653)
T COG0370 256 EKSSLTDKIDRVLLHPVLGLPIFLL 280 (653)
T ss_pred ccccHHHHhhHHHhchHHHHHHHHH
Confidence 5899999999999999999855443
No 25
>KOG0091|consensus
Probab=99.89 E-value=3.8e-23 Score=201.80 Aligned_cols=166 Identities=20% Similarity=0.344 Sum_probs=140.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
..+++++||++-||||||+..|+.+. +-..||+|+||. .+... ......++++|||+|+++|+++...| |+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdff-arlie~~pg~riklqlwdtagqerfrsitksy----yr- 80 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFF-ARLIELRPGYRIKLQLWDTAGQERFRSITKSY----YR- 80 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHH-HHHHhcCCCcEEEEEEeeccchHHHHHHHHHH----hh-
Confidence 46899999999999999999999874 455799999963 33332 22233499999999999999999999 33
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+.-++++|||+||.+|| +.++.|+.+...+.+ .+..+.+.+||+|+|+.
T Consensus 81 -nsvgvllvyditnr~sf-ehv~~w~~ea~m~~q---------------------------~P~k~VFlLVGhKsDL~-- 129 (213)
T KOG0091|consen 81 -NSVGVLLVYDITNRESF-EHVENWVKEAAMATQ---------------------------GPDKVVFLLVGHKSDLQ-- 129 (213)
T ss_pred -cccceEEEEeccchhhH-HHHHHHHHHHHHhcC---------------------------CCCeeEEEEeccccchh--
Confidence 48899999999999999 999999987665443 13367789999999995
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
.+|++..+++++||..+|..|++||||+|.|+++.+.+|.+-+|..
T Consensus 130 ---SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 130 ---SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred ---hhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999988753
No 26
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=1.6e-22 Score=205.63 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++. ..+.||++.+|. ...........++||||+|++++..+...+ ++ ++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~----~~--~a 73 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT--ASFEIDEQRIELSLWDTSGSPYYDNVRPLC----YP--DS 73 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE--EEEEECCEEEEEEEEECCCchhhhhcchhh----cC--CC
Confidence 589999999999999999999864 477899987653 222112223489999999999988887777 33 59
Q ss_pred cEEEEEEeCCCcCchHHH-HHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTE-AETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~-L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+++|+|||++++.|| ++ +..|...+++.. ..+|++|||||+|+.++..
T Consensus 74 ~~~ilvfdit~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~~iilVgnK~DL~~~~~ 122 (178)
T cd04131 74 DAVLICFDISRPETL-DSVLKKWRGEIQEFC------------------------------PNTKVLLVGCKTDLRTDLS 122 (178)
T ss_pred CEEEEEEECCChhhH-HHHHHHHHHHHHHHC------------------------------CCCCEEEEEEChhhhcChh
Confidence 999999999999999 66 478998876542 1489999999999853110
Q ss_pred -------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCC-HHHHHHHHHHHH
Q psy11649 193 -------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGL-VKRTRDILNHYA 236 (890)
Q Consensus 193 -------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~n-Id~Lk~~I~~~l 236 (890)
..++.+..++++++|.++|+ .+++|||++|.| +++++..+....
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHH
Confidence 01234777899999999997 799999999995 999988887643
No 27
>KOG0095|consensus
Probab=99.89 E-value=9.5e-23 Score=196.11 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=139.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
-+||++||+.|||||+|+.+|+.+-+ ....|+|++|...++... .++.+++||||+|+++|+++...| |+ +
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagqerfrsitqsy----yr--s 79 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQERFRSITQSY----YR--S 79 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccchHHHHHHHHHH----hh--h
Confidence 58999999999999999999999743 345789999876555532 345699999999999999999999 33 4
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|||++...+| +.|..|+.+|.++..+ .+-.|+||||.|+.
T Consensus 80 ahalilvydiscqpsf-dclpewlreie~yan~-----------------------------kvlkilvgnk~d~~---- 125 (213)
T KOG0095|consen 80 AHALILVYDISCQPSF-DCLPEWLREIEQYANN-----------------------------KVLKILVGNKIDLA---- 125 (213)
T ss_pred cceEEEEEecccCcch-hhhHHHHHHHHHHhhc-----------------------------ceEEEeeccccchh----
Confidence 9999999999999999 9999999999887654 56789999999995
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+.|.+.++..+.|+.....-+++|||++..|+++|+.-+.-.+..
T Consensus 126 -drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 126 -DRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred -hhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Confidence 478899999999999988889999999999999998887766643
No 28
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.89 E-value=4.5e-22 Score=199.96 Aligned_cols=164 Identities=15% Similarity=0.273 Sum_probs=131.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEecc---------ccceEEEEEEcCCCcchhhHHhh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKT---------VMKDICHLWELGSGTSRLEVASL 102 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~---------~~k~~l~IwDlpG~~~~~~Li~~ 102 (890)
..+||+++|++|||||||+++|+++. ..+.+|++++|.-....... .....++|||++|++++..+...
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 35899999999999999999999863 46678888886433322111 12248999999999998888877
Q ss_pred hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 103 ~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
+ ++ +++++|+|||++++++| .++..|+..+..... ..+.|+++||
T Consensus 83 ~----~~--~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piiiv~ 127 (180)
T cd04127 83 F----FR--DAMGFLLIFDLTNEQSF-LNVRNWMSQLQTHAY----------------------------CENPDIVLCG 127 (180)
T ss_pred H----hC--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEE
Confidence 7 22 59999999999999998 888999987765321 1257999999
Q ss_pred ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
||+|+.. .+.+..+++.+++..+++++++|||+++.|++++++.|...++
T Consensus 128 nK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 128 NKADLED-----QRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred eCccchh-----cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999852 4555667789999999999999999999999999999988764
No 29
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.89 E-value=3.1e-22 Score=205.23 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=129.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+||+++|++|||||||+.+|+.+. ..+.||++..|. ...........++||||+|++++..+...+ ++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~----~~-- 73 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS--AQTAVDGRTVSLNLWDTAGQEEYDRLRTLS----YP-- 73 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE--EEEEECCEEEEEEEEECCCchhhhhhhhhh----cc--
Confidence 35899999999999999999999864 477899986653 222222223489999999999999988887 33
Q ss_pred cCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++|+|||++++.|| +++. .|...+.... .++|++|||||+|+...
T Consensus 74 ~a~~~ilvydit~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~piilvgNK~DL~~~ 122 (191)
T cd01875 74 QTNVFIICFSIASPSSY-ENVRHKWHPEVCHHC------------------------------PNVPILLVGTKKDLRND 122 (191)
T ss_pred CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEEeChhhhcC
Confidence 59999999999999998 7775 6887665421 15899999999998532
Q ss_pred CCc-------chhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEP-------NKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~-------e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
... ..+.+..++++.+|..++ +.+++|||++|.|++++++.+...+..
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 100 012345678899999998 589999999999999999999887743
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=5.4e-22 Score=197.30 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=128.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+++|++|||||||+++|+++. ..+.+|++.++...... .......++|||++|++++..+...+ ++ +
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ 74 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE-VNGQKIKLQIWDTAGQERFRAVTRSY----YR--G 74 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEE-ECCEEEEEEEEECCCcHHHHHHHHHH----hc--C
Confidence 3799999999999999999999864 35567788775422222 12223489999999999988887776 23 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|||++++++| +.+..|++.+.... ...+|+++||||+|+..
T Consensus 75 ~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iiiv~nK~Dl~~--- 121 (166)
T cd04122 75 AAGALMVYDITRRSTY-NHLSSWLTDARNLT-----------------------------NPNTVIFLIGNKADLEA--- 121 (166)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCeEEEEEECccccc---
Confidence 9999999999999998 88999988665421 12589999999999952
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
++....++++++|..+++.+++|||++|.|+++++..+...++
T Consensus 122 --~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 122 --QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred --ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556677888999999999999999999999999888877664
No 31
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=4e-22 Score=211.33 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=133.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
-..+||++||++|||||||+++|+++ ...+.||++.+|.. ..........++||||+|++.|..+...+ ++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~--~i~~~~~~v~l~iwDTaG~e~~~~~~~~~----~~- 83 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA--GLETEEQRVELSLWDTSGSPYYDNVRPLC----YS- 83 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE--EEEECCEEEEEEEEeCCCchhhHHHHHHH----cC-
Confidence 44689999999999999999999986 45788999877642 22222223489999999999999888877 33
Q ss_pred ccCcEEEEEEeCCCcCchHHH-HHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTE-AETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~-L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++|+|||++++++| ++ +..|++.+.+.. .++|++|||||+|+..
T Consensus 84 -~ad~vIlVyDit~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~piilVgNK~DL~~ 131 (232)
T cd04174 84 -DSDAVLLCFDISRPETV-DSALKKWKAEIMDYC------------------------------PSTRILLIGCKTDLRT 131 (232)
T ss_pred -CCcEEEEEEECCChHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEECccccc
Confidence 69999999999999999 55 589998876532 1479999999999853
Q ss_pred CCC-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCC-CHHHHHHHHHHHHhc
Q psy11649 190 NLE-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPG-LVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~-nId~Lk~~I~~~lf~ 238 (890)
+.. ...+.+..++++++|+++|+ .|++|||++|. |+++++..+...+..
T Consensus 132 ~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 132 DLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred ccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 211 11356778899999999999 69999999998 899999998877654
No 32
>KOG0080|consensus
Probab=99.88 E-value=2.3e-22 Score=195.81 Aligned_cols=168 Identities=15% Similarity=0.207 Sum_probs=139.8
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||++||++|||||||+.+|+... .....|+|+||..+.... ...+.++-||||+|+++|+.+.+.| |+
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSy----yR 82 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSY----YR 82 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhH----hc
Confidence 3456999999999999999999999864 344466999976433322 2233499999999999999999999 55
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++.++|+|||+|..++| .+|..|++++.-+..+ ..+-.++||||+|..
T Consensus 83 --gaqGiIlVYDVT~Rdtf-~kLd~W~~Eld~Ystn----------------------------~diikmlVgNKiDke- 130 (209)
T KOG0080|consen 83 --GAQGIILVYDVTSRDTF-VKLDIWLKELDLYSTN----------------------------PDIIKMLVGNKIDKE- 130 (209)
T ss_pred --cCceeEEEEEccchhhH-HhHHHHHHHHHhhcCC----------------------------ccHhHhhhcccccch-
Confidence 69999999999999999 8899999988765432 357789999999973
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 240 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~ 240 (890)
.+|.+..++..+||+++++-|+++|||+..|++..++.+...+...+
T Consensus 131 ----s~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 131 ----SERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred ----hcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 37999999999999999999999999999999999888877775543
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.88 E-value=1e-21 Score=195.37 Aligned_cols=160 Identities=18% Similarity=0.298 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++. ..+.||++.+|...+... ......+++||++|+.++..+...+ ++ ++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~----~~--~~ 74 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAY----YR--GA 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHH----cc--CC
Confidence 689999999999999999999875 466788887765433322 1223489999999999888877766 23 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|||+++++++ +.+..|+..+.+.. ...+|+++||||+|+..
T Consensus 75 ~~~l~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piivv~nK~Dl~~---- 120 (165)
T cd01865 75 MGFILMYDITNEESF-NAVQDWSTQIKTYS-----------------------------WDNAQVILVGNKCDMED---- 120 (165)
T ss_pred cEEEEEEECCCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCCEEEEEECcccCc----
Confidence 999999999999998 78889988765422 12589999999999952
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+........+++..+++++++|||+++.|++++++.+...+.
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 121 -ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred -ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444566778888899999999999999999999999887653
No 34
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.88 E-value=9.5e-22 Score=198.24 Aligned_cols=161 Identities=18% Similarity=0.269 Sum_probs=128.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+++|++|||||||+++|.++. ..+.||++..|. ...........++|||++|++++..+...+ ++ +
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~----~~--~ 73 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK--QQARIDNEPALLDILDTAGQAEFTAMRDQY----MR--C 73 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE--EEEEECCEEEEEEEEeCCCchhhHHHhHHH----hh--c
Confidence 4799999999999999999999864 356788875543 222112223479999999999998888877 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|||++++.+| +++..|...+.+... ..++|+++||||+|+..
T Consensus 74 ~d~~ilv~d~~~~~Sf-~~~~~~~~~i~~~~~----------------------------~~~~piilvgNK~Dl~~--- 121 (172)
T cd04141 74 GEGFIICYSVTDRHSF-QEASEFKKLITRVRL----------------------------TEDIPLVLVGNKVDLES--- 121 (172)
T ss_pred CCEEEEEEECCchhHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEEChhhhh---
Confidence 9999999999999999 888888876654311 12589999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+.+...+.+.+|..+++++++|||++|.|++++++.+...+.
T Consensus 122 --~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 122 --QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred --cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 4566677888999999999999999999999999999987764
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.88 E-value=1.3e-21 Score=192.51 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|+|++|||||||+++|+++. ..+.++++.+|...+.... .....+++||++|++.+..+...+ ++ ++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~ 73 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-NKEVRVNFFDLSGHPEYLEVRNEF----YK--DT 73 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CeEEEEEEEECCccHHHHHHHHHH----hc--cC
Confidence 489999999999999999999964 4677899888754433322 223489999999998888777766 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|||++++.++ +.+..|+..+.+..... .....+|+++|+||+|+..
T Consensus 74 d~~ilv~D~~~~~s~-~~~~~~~~~~~~~~~~~------------------------~~~~~~piilv~nK~Dl~~---- 124 (168)
T cd04119 74 QGVLLVYDVTDRQSF-EALDSWLKEMKQEGGPH------------------------GNMENIVVVVCANKIDLTK---- 124 (168)
T ss_pred CEEEEEEECCCHHHH-HhHHHHHHHHHHhcccc------------------------ccCCCceEEEEEEchhccc----
Confidence 999999999999998 88899998887654220 1123689999999999852
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
++.....+.+.++...+++++++||+++.|++++++.|...++
T Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 125 -HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred -ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445566777888889999999999999999999999987764
No 36
>KOG0086|consensus
Probab=99.88 E-value=3.4e-22 Score=193.03 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=135.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccc-eEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMK-DICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k-~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
..-+|++++|+.|+|||+|+++|..+ ++....|+|++|. .+......+ .+++||||+|+++|+++...| |+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFg--SrIinVGgK~vKLQIWDTAGQErFRSVtRsY----YR 80 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFG--SRIVNVGGKTVKLQIWDTAGQERFRSVTRSY----YR 80 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeec--ceeeeecCcEEEEEEeecccHHHHHHHHHHH----hc
Confidence 34689999999999999999999985 4455689999965 444323333 399999999999999999999 55
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++.+.++|||+++.++| +.|..|+..++.. .+..|-++++|||.|+-
T Consensus 81 --GAAGAlLVYD~Tsrdsf-naLtnWL~DaR~l-----------------------------As~nIvviL~GnKkDL~- 127 (214)
T KOG0086|consen 81 --GAAGALLVYDITSRDSF-NALTNWLTDARTL-----------------------------ASPNIVVILCGNKKDLD- 127 (214)
T ss_pred --cccceEEEEeccchhhH-HHHHHHHHHHHhh-----------------------------CCCcEEEEEeCChhhcC-
Confidence 79999999999999999 9999999987763 33478999999999994
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|++...++.+||.++...+.+|||++|+|+++.+--....+
T Consensus 128 ----~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 128 ----PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 170 (214)
T ss_pred ----hhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999754444443
No 37
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.88 E-value=1.4e-21 Score=194.76 Aligned_cols=161 Identities=21% Similarity=0.254 Sum_probs=130.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+++|++|||||||+++|++. ...+.+|++.+|........ .....+++||++|++.+..+...+ ++ +
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~----~~--~ 75 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-GKKIKLQIWDTAGQERFRTITTAY----YR--G 75 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHH----hC--C
Confidence 579999999999999999999986 45667888887643333211 122489999999999888877666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|||++++.+| +.+..|+..+.+... .++|+++||||+|+.+
T Consensus 76 ad~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~p~iiv~nK~Dl~~--- 122 (167)
T cd01867 76 AMGIILVYDITDEKSF-ENIRNWMRNIEEHAS-----------------------------EDVERMLVGNKCDMEE--- 122 (167)
T ss_pred CCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC-----------------------------CCCcEEEEEECccccc---
Confidence 9999999999999998 888899987765321 2689999999999962
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.++...++++.++..+++++++|||+++.|++++++.+...++
T Consensus 123 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 123 --KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred --ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4455566788899999999999999999999999999987764
No 38
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.88 E-value=1.5e-21 Score=193.60 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=129.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+++|++|||||||+++|+++. ..+.+|++.++....... ......+++||+||++++..+...+ ++ +
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~----~~--~ 74 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSY----YR--G 74 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHH----hC--c
Confidence 4799999999999999999999864 356788887765433322 1223479999999999888887777 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|||++++++| +.+..|+..+.+... .++|+++|+||+|+..
T Consensus 75 ~~~ii~v~d~~~~~s~-~~l~~~~~~~~~~~~-----------------------------~~~~~iiv~nK~Dl~~--- 121 (166)
T cd01869 75 AHGIIIVYDVTDQESF-NNVKQWLQEIDRYAS-----------------------------ENVNKLLVGNKCDLTD--- 121 (166)
T ss_pred CCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC-----------------------------CCCcEEEEEEChhccc---
Confidence 9999999999999998 888889987765321 2589999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+....++++.+++.++++++++||++|.|++++++.|.+.++
T Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 122 --KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred --ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 4455567788999999999999999999999999999988763
No 39
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.88 E-value=1.3e-21 Score=192.50 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=125.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEec-cccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGK-TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
+||+++|++|||||||+++|+++. ..+.+|++.+|........ ......+++||+||++.+..+...+ ++ +
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~--~ 74 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAY----YR--G 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHH----hc--C
Confidence 489999999999999999999863 3567888888643333222 1223489999999999988888777 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|||+++++++ +.+..|++.+.+.. .++|+++|+||+|+..
T Consensus 75 ~~~~v~v~d~~~~~s~-~~l~~~~~~~~~~~------------------------------~~~p~iiv~nK~Dl~~--- 120 (162)
T cd04106 75 AQACILVFSTTDRESF-EAIESWKEKVEAEC------------------------------GDIPMVLVQTKIDLLD--- 120 (162)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEEChhccc---
Confidence 9999999999999998 88899988765422 1589999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
++.+..+++..++..++++++++||+++.|++++++.|..
T Consensus 121 --~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 121 --QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred --ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344456788899999999999999999999999888764
No 40
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=1.6e-21 Score=193.93 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++. ..+.+|++.+|....... ......++|||++|+.++..+...+ ++ ++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~----~~--~~ 73 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQY----YR--RA 73 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHH----hc--CC
Confidence 479999999999999999999874 356788887754322221 1123479999999999988887777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++++|||++++++| +.+..|+..+..... ..+|+++||||+|+.
T Consensus 74 ~~~i~v~d~~~~~sf-~~~~~~~~~~~~~~~-----------------------------~~~~iilvgnK~Dl~----- 118 (161)
T cd04117 74 QGIFLVYDISSERSY-QHIMKWVSDVDEYAP-----------------------------EGVQKILIGNKADEE----- 118 (161)
T ss_pred cEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECcccc-----
Confidence 999999999999998 888899887765321 258999999999985
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+++.+..++...+++.+++++++|||++|.|++++++.|..+
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 356666788999999999999999999999999998888654
No 41
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=2.8e-21 Score=201.70 Aligned_cols=164 Identities=20% Similarity=0.333 Sum_probs=131.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+|+|++|||||||+++|+++. ..+.+|++.+|..............+++||++|++++..+...+ ++ +
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ 75 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSY----YR--N 75 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHH----hc--C
Confidence 5799999999999999999999864 35678888876432222222223489999999999988888777 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|||++++++| +++..|++.+.+... ...+|++|||||+|+..
T Consensus 76 ~d~iilv~D~~~~~Sf-~~l~~~~~~i~~~~~----------------------------~~~~~iilvgNK~Dl~~--- 123 (211)
T cd04111 76 SVGVLLVFDITNRESF-EHVHDWLEEARSHIQ----------------------------PHRPVFILVGHKCDLES--- 123 (211)
T ss_pred CcEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCeEEEEEEcccccc---
Confidence 9999999999999998 888999987765321 12578999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+..++..++++.+++.+++|||+++.|++++++.|...++.
T Consensus 124 --~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 124 --QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred --ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45566677889999999999999999999999999999988754
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.87 E-value=2.3e-21 Score=190.75 Aligned_cols=160 Identities=19% Similarity=0.274 Sum_probs=124.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
++||+++|++|||||||+++|+++. ..+.||++..|. +..........++|||++|++++..+...+ ++ +
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ 72 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--KQIEVDGQQCMLEILDTAGTEQFTAMRDLY----IK--N 72 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEE--EEEEECCEEEEEEEEECCCccccchHHHHH----hh--c
Confidence 3699999999999999999999864 456677763332 222222223478999999999999888877 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|||+++++++ +.+..|++.+.+... ..++|+++|+||+|+..
T Consensus 73 ~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~--- 120 (163)
T cd04136 73 GQGFVLVYSITSQSSF-NDLQDLREQILRVKD----------------------------TENVPMVLVGNKCDLED--- 120 (163)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccccc---
Confidence 9999999999999998 888888887765321 12589999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+....++...++..+++++++|||+++.|++++++.|...+
T Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 121 --ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred --cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 344455667788888899999999999999999998887653
No 43
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=2.9e-21 Score=190.34 Aligned_cols=158 Identities=17% Similarity=0.287 Sum_probs=130.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
||+++|+++||||||+++|.++ ..++.+|++.++........ .....++|||++|++++..+...+ ++ +++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~----~~--~~~ 73 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-GKPVNLEIWDTSGQERFDSLRDIF----YR--NSD 73 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-TEEEEEEEEEETTSGGGHHHHHHH----HT--TES
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-cccccccccccccccccccccccc----cc--ccc
Confidence 7999999999999999999986 45777888877543333322 223489999999999988887776 22 599
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++|+|||+++++|| +++..|+..+..... .++|++|||||+|+. +
T Consensus 74 ~~ii~fd~~~~~S~-~~~~~~~~~i~~~~~-----------------------------~~~~iivvg~K~D~~-----~ 118 (162)
T PF00071_consen 74 AIIIVFDVTDEESF-ENLKKWLEEIQKYKP-----------------------------EDIPIIVVGNKSDLS-----D 118 (162)
T ss_dssp EEEEEEETTBHHHH-HTHHHHHHHHHHHST-----------------------------TTSEEEEEEETTTGG-----G
T ss_pred cccccccccccccc-ccccccccccccccc-----------------------------ccccceeeecccccc-----c
Confidence 99999999999999 899999998877543 258999999999985 2
Q ss_pred hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.+..++++++|.++++.+++|||+++.|+++++..+.+.+
T Consensus 119 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 119 EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 577778899999999999999999999999999988877665
No 44
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.87 E-value=3e-21 Score=191.16 Aligned_cols=160 Identities=20% Similarity=0.285 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
++||+++|++|||||||+++|+++. ..+.+|++..|. ...........++||||+|++++..+...+ ++ +
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ 72 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--KQVEVDGQQCMLEILDTAGTEQFTAMRDLY----MK--N 72 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE--EEEEECCEEEEEEEEECCCcccchhHHHHH----Hh--h
Confidence 4699999999999999999999763 456688875542 222112223478999999999999998888 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|||++++.+| +.+..|+..+.+... ..++|++||+||+|+..
T Consensus 73 ~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~--- 120 (164)
T cd04175 73 GQGFVLVYSITAQSTF-NDLQDLREQILRVKD----------------------------TEDVPMILVGNKCDLED--- 120 (164)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECCcchh---
Confidence 9999999999999998 888888887754321 13589999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++......+..+++.+++++++|||+++.|+++++..|...+
T Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 121 --ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 334445567788888999999999999999999999887654
No 45
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.87 E-value=3.3e-22 Score=214.71 Aligned_cols=239 Identities=18% Similarity=0.115 Sum_probs=180.5
Q ss_pred cccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---eccccce-EEEEEEcCCCcch-----
Q psy11649 26 VHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKTVMKD-ICHLWELGSGTSR----- 96 (890)
Q Consensus 26 ~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~~~k~-~l~IwDlpG~~~~----- 96 (890)
.++...+++..+|+|||.|+||||||+++|++ .++.++ +|.|++.. |....+. ++|+.|+||....
T Consensus 54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LTn----t~seva-~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~ 128 (365)
T COG1163 54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLTN----TKSEVA-DYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR 128 (365)
T ss_pred CcceEeccCCeEEEEEcCCCccHHHHHHHHhC----CCcccc-ccCceecccccceEeecCceEEEEcCcccccCcccCC
Confidence 67899999999999999999999999999999 445555 67777766 5444444 9999999986533
Q ss_pred ---hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHH---------------------------------
Q psy11649 97 ---LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFR--------------------------------- 140 (890)
Q Consensus 97 ---~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~--------------------------------- 140 (890)
.+++...|+ ||+||+|+|+..+.+..+.+...++...
T Consensus 129 grG~~vlsv~R~-------ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~ 201 (365)
T COG1163 129 GRGRQVLSVARN-------ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDE 201 (365)
T ss_pred CCcceeeeeecc-------CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCH
Confidence 334444343 9999999999988763355555444433
Q ss_pred HHHhhhhhhh---hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEE
Q psy11649 141 AIFESNESVR---EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFH 217 (890)
Q Consensus 141 e~~~~ll~~~---~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~et 217 (890)
+.+..++.++ ++.+.+++.++.++..|....+...+|.++|.||.|+.. .+++..+.+.. ..+++
T Consensus 202 ~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~----------~e~~~~l~~~~--~~v~i 269 (365)
T COG1163 202 DTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG----------LEELERLARKP--NSVPI 269 (365)
T ss_pred HHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC----------HHHHHHHHhcc--ceEEE
Confidence 2222233333 555566666677777776667777899999999999962 23455555555 67999
Q ss_pred eccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCC-CCCCCCccccccccccccchhHHHhhc
Q psy11649 218 SSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HGKDASLESGGRGFNRSRGMKFEKKRG 296 (890)
Q Consensus 218 SAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r~~~~~~~~~~~~~~~~~~~f~~~~~ 296 (890)
||+++.|+++|++-|...+ +..+.++.|.|.... ...|+ +|+++++.++|+.+|+++..+|+++++
T Consensus 270 sa~~~~nld~L~e~i~~~L-----------~liRVYtK~~g~~pd--~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~V 336 (365)
T COG1163 270 SAKKGINLDELKERIWDVL-----------GLIRVYTKPPGEEPD--FDEPLILRRGSTVGDVCRKIHRDLVENFRYARV 336 (365)
T ss_pred ecccCCCHHHHHHHHHHhh-----------CeEEEEecCCCCCCC--CCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEE
Confidence 9999999999999999887 566677777776553 45688 899999999999999999999999999
Q ss_pred ccccc
Q psy11649 297 WIEGT 301 (890)
Q Consensus 297 w~~~~ 301 (890)
|-++.
T Consensus 337 WGkSv 341 (365)
T COG1163 337 WGKSV 341 (365)
T ss_pred eccCC
Confidence 96543
No 46
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.87 E-value=4.3e-21 Score=193.11 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=128.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
||+++|++|||||||+++|.++. +.|.||++.+|........ .....++|||++|++++..+...+ ++ ++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ad 74 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-GVPFSLQLWDTAGQERFKCIASTY----YR--GAQ 74 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHhhHHHH----hc--CCC
Confidence 79999999999999999999974 4778999988753333221 123489999999999988888777 22 599
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++|+|||++++.++ +.+..|++.+.+... +..+|+++||||+|+... .
T Consensus 75 ~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~~iilVgnK~Dl~~~---~ 122 (170)
T cd04108 75 AIIIVFDLTDVASL-EHTRQWLEDALKEND----------------------------PSSVLLFLVGTKKDLSSP---A 122 (170)
T ss_pred EEEEEEECcCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCeEEEEEEChhcCcc---c
Confidence 99999999999998 888889987654321 114689999999998521 1
Q ss_pred hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
......+.+..++..+++.++++||+++.|++++++.|...++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 123 QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 122345667888888999999999999999999999998887653
No 47
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=3.5e-21 Score=197.02 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
+||+|+|++|||||||+++|++... .+.+|++.++....... ......++|||+||+.++..+...+ ++ +
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ 73 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAY----YR--D 73 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHH----cc--C
Confidence 4899999999999999999998643 56688887764322221 1123489999999999888877666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|||+++++++ +++..|+..+.+... .++|+++||||+|+..
T Consensus 74 ad~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piiiv~NK~Dl~~--- 120 (191)
T cd04112 74 AHALLLLYDITNKASF-DNIRAWLTEIKEYAQ-----------------------------EDVVIMLLGNKADMSG--- 120 (191)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCcEEEEEEcccchh---
Confidence 9999999999999998 888889887765422 2689999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
.+....++++.++..++++++++||++|.|++++++.|...+.+.
T Consensus 121 --~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 121 --ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred --ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 455556778899999999999999999999999999999887543
No 48
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.87 E-value=3.7e-21 Score=190.39 Aligned_cols=160 Identities=21% Similarity=0.312 Sum_probs=128.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+++|++|||||||+++|+++. ..+.|+++.+|........ .....+++||+||+.++..+...+ ++ +
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~----~~--~ 75 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-GKTIKAQIWDTAGQERYRAITSAY----YR--G 75 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHH----HC--C
Confidence 4799999999999999999999864 3567888877654333221 122379999999999888887776 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|||++++.++ +++..|++.+.+... .++|+++||||+|+..
T Consensus 76 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~pi~vv~nK~Dl~~--- 122 (165)
T cd01868 76 AVGALLVYDITKKQTF-ENVERWLKELRDHAD-----------------------------SNIVIMLVGNKSDLRH--- 122 (165)
T ss_pred CCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECccccc---
Confidence 8999999999999998 888999987766432 2589999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+....++...++...++.++++||++|.|++++++.|...+
T Consensus 123 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 123 --LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred --cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355556678888888899999999999999999999887665
No 49
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=4.2e-21 Score=187.73 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
++||+++|++|||||||+++|+++. ..+.||++..|. ...........+++||++|++++..+...+ ++ +
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~----~~--~ 72 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR--KQVVIDGETCLLDILDTAGQEEYSAMRDQY----MR--T 72 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEE--EEEEECCEEEEEEEEECCCCcchHHHHHHH----Hh--c
Confidence 3689999999999999999999864 466677775542 222111122378999999999998888887 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|||+++..++ +.+..|...+.+... ..++|+++|+||+|+.
T Consensus 73 ~~~~i~v~~~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piivv~nK~Dl~---- 119 (162)
T cd04138 73 GEGFLCVFAINSRKSF-EDIHTYREQIKRVKD----------------------------SDDVPMVLVGNKCDLA---- 119 (162)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECcccc----
Confidence 9999999999999988 788888877665321 1368999999999985
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.....+++.++..+++++++|||++|.|++++++.|...+
T Consensus 120 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 120 --ARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred --cceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 244456678888888999999999999999999998887653
No 50
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.87 E-value=5.1e-21 Score=190.60 Aligned_cols=164 Identities=15% Similarity=0.211 Sum_probs=127.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
+..+||+++|++|||||||+++|+++.. .+.++++.++...... .......++|||++|++++..+...+ ++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~~~~~~~~----~~- 76 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE-VDGHFVTLQIWDTAGQERFRSLRTPF----YR- 76 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEE-ECCeEEEEEEEeCCChHHHHHhHHHH----hc-
Confidence 3568999999999999999999998643 4567877765322222 12223479999999999988888777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++|+|||++++.++ +.+..|...+...... ....++|+++||||+|+.
T Consensus 77 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------~~~~~~piilv~nK~Dl~-- 127 (170)
T cd04116 77 -GSDCCLLTFAVDDSQSF-QNLSNWKKEFIYYADV-------------------------KEPESFPFVVLGNKNDIP-- 127 (170)
T ss_pred -CCCEEEEEEECCCHHHH-HhHHHHHHHHHHhccc-------------------------ccCCCCcEEEEEECcccc--
Confidence 59999999999999998 8888998877654321 122368999999999984
Q ss_pred CCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.+.+..+++++++..++. +++++||+++.|++++++.+...
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 128 ----ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ----ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 455667788999999884 79999999999999998877643
No 51
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=3.4e-21 Score=202.77 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
+||+++|++|||||||+++|+++.. .+.+|++.+|.. ... ....+.|||++|++.+..+...+ ++ +++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~--~~~---~~~~l~iwDt~G~e~~~~l~~~~----~~--~ad 69 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYL--KQW---GPYNISIWDTAGREQFHGLGSMY----CR--GAA 69 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEE--EEe---eEEEEEEEeCCCcccchhhHHHH----hc--cCC
Confidence 4899999999999999999998753 567888876532 211 22379999999999998888877 22 599
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC--
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE-- 192 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d-- 192 (890)
++|+|||++++.+| +++..|+..+.+. ...++|++|||||+|+..+..
T Consensus 70 ~~IlV~Dvt~~~Sf-~~l~~~~~~l~~~-----------------------------~~~~~piIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 70 AVILTYDVSNVQSL-EELEDRFLGLTDT-----------------------------ANEDCLFAVVGNKLDLTEEGALA 119 (220)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHHHHh-----------------------------cCCCCcEEEEEECcccccccccc
Confidence 99999999999998 7887777655432 112589999999999964111
Q ss_pred ------------cchhhhhHHHHHHHHHHcC--------------CeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649 193 ------------PNKKRIAVQCLRYLAHVNG--------------ASLLFHSSLDPGLVKRTRDILNHYAFSSH 240 (890)
Q Consensus 193 ------------~e~r~~i~~~lr~la~~~G--------------a~l~etSAK~~~nId~Lk~~I~~~lf~~~ 240 (890)
..++.+..+++..+|.+.+ ++|++|||++|.|+++++..+...++...
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 1257788899999999887 68999999999999999999988876543
No 52
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.87 E-value=3.5e-21 Score=194.82 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++. .++.||++..|.. ..........++|||++|++++..+...+ ++ ++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~a 73 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV--TVMIGGEPYTLGLFDTAGQEDYDRLRPLS----YP--QT 73 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE--EEEECCEEEEEEEEECCCccchhhhhhhh----cc--cC
Confidence 689999999999999999999864 4778999866532 22111223489999999999988877766 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+++|+|||++++++| +++. .|...++... ..+|++|||||+|+..+..
T Consensus 74 ~~~ilv~d~~~~~s~-~~~~~~w~~~i~~~~------------------------------~~~piilvgnK~Dl~~~~~ 122 (175)
T cd01874 74 DVFLVCFSVVSPSSF-ENVKEKWVPEITHHC------------------------------PKTPFLLVGTQIDLRDDPS 122 (175)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEECHhhhhChh
Confidence 999999999999998 7775 5887665421 1589999999999853210
Q ss_pred -------cchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 -------PNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 -------~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
...+.+..++++++++.++ +.+++|||++|.|++++++.+...+
T Consensus 123 ~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 123 TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 0125667788899999988 6899999999999999988877643
No 53
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.87 E-value=5.5e-21 Score=190.10 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++. ..+.|+++..|. ...........+++||++|++++..+...+ ++ ++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~ 73 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCSKNICTLQITDTTGSHQFPAMQRLS----IS--KG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE--EEEEECCEEEEEEEEECCCCCcchHHHHHH----hh--cC
Confidence 689999999999999999999864 456677775542 222212223489999999999988877666 22 49
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|||+++++++ +.+..|.+.+++.... ....+|+++||||+|+..
T Consensus 74 ~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilv~nK~Dl~~---- 122 (165)
T cd04140 74 HAFILVYSVTSKQSL-EELKPIYELICEIKGN--------------------------NIEKIPIMLVGNKCDESH---- 122 (165)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHHhcC--------------------------CCCCCCEEEEEECccccc----
Confidence 999999999999998 8888898877664321 123689999999999852
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.+.+...+...++..+++.+++|||++|.|++++++.|..+
T Consensus 123 -~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 123 -KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred -cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 35556667788888899999999999999999998888654
No 54
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.86 E-value=5.2e-21 Score=200.86 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=128.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
+..+||+++|++|||||||+++++.+. ..+.+|+|.++...... .......++|||++|++++..+...+ ++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~- 84 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-TNCGKIRFYCWDTAGQEKFGGLRDGY----YI- 84 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEE-ECCeEEEEEEEECCCchhhhhhhHHH----cc-
Confidence 567999999999999999999998764 46788998775432222 11223489999999999998888777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++|+|||++++++| +++..|+..+.+.. .++|++|||||+|+.
T Consensus 85 -~~~~~ilvfD~~~~~s~-~~i~~w~~~i~~~~------------------------------~~~piilvgNK~Dl~-- 130 (219)
T PLN03071 85 -HGQCAIIMFDVTARLTY-KNVPTWHRDLCRVC------------------------------ENIPIVLCGNKVDVK-- 130 (219)
T ss_pred -cccEEEEEEeCCCHHHH-HHHHHHHHHHHHhC------------------------------CCCcEEEEEEchhhh--
Confidence 59999999999999998 88999998887532 158999999999984
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+....+ .++...++.+++|||++|.|+++++++|...++.
T Consensus 131 ----~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 131 ----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred ----hccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 222333344 6778889999999999999999999999888753
No 55
>KOG0088|consensus
Probab=99.86 E-value=4.3e-22 Score=193.37 Aligned_cols=167 Identities=19% Similarity=0.311 Sum_probs=141.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEecc-ccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKT-VMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~-~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
....+|++++|...||||||+-|++++.++.+.-.++.-.|..+.... +....++||||+|+++|..+-+.| |+
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY----YR- 84 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY----YR- 84 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceE----Ee-
Confidence 456799999999999999999999998776654444444444444222 223389999999999999999999 55
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+.+++++|||+|+.+|| ..+..|..+++....+ .+-++|||||+|+.
T Consensus 85 -gSnGalLVyDITDrdSF-qKVKnWV~Elr~mlGn-----------------------------ei~l~IVGNKiDLE-- 131 (218)
T KOG0088|consen 85 -GSNGALLVYDITDRDSF-QKVKNWVLELRTMLGN-----------------------------EIELLIVGNKIDLE-- 131 (218)
T ss_pred -CCCceEEEEeccchHHH-HHHHHHHHHHHHHhCC-----------------------------eeEEEEecCcccHH--
Confidence 69999999999999999 9999999998886554 57899999999994
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
++|.+..+++..+|..-|+.+++|||+++.||.++++.+.......
T Consensus 132 ---eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 132 ---EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred ---HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998887653
No 56
>KOG0083|consensus
Probab=99.86 E-value=1.4e-22 Score=191.71 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=136.7
Q ss_pred EEEcCCCCCHHHHHHHHHcC---CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 39 LLIGTKSVGKSTLVFRFLEK---NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 39 vLVGd~nvGKSSLInrL~~~---~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
+++|++++|||+|+-||..+ .++..+|+|++|.. +.......+++++||||+||++|+++...| |+ ++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rn-kli~~~~~kvklqiwdtagqerfrsvt~ay----yr--da~a 73 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRN-KLIDMDDKKVKLQIWDTAGQERFRSVTHAY----YR--DADA 73 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeecccc-ceeccCCcEEEEEEeeccchHHHhhhhHhh----hc--ccce
Confidence 37899999999999998876 46788999999753 222344445699999999999999999999 44 6999
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
.+++||++|..|| +++..|+.+|.++... .+.++++|||+|+. .+
T Consensus 74 llllydiankasf-dn~~~wlsei~ey~k~-----------------------------~v~l~llgnk~d~a-----~e 118 (192)
T KOG0083|consen 74 LLLLYDIANKASF-DNCQAWLSEIHEYAKE-----------------------------AVALMLLGNKCDLA-----HE 118 (192)
T ss_pred eeeeeecccchhH-HHHHHHHHHHHHHHHh-----------------------------hHhHhhhccccccc-----hh
Confidence 9999999999999 9999999999998766 46789999999995 36
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 196 KRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 196 r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
|.+..++.+++|+.||+++++||||+|-|++..+-.|...+..
T Consensus 119 r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 119 RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred hccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 8888899999999999999999999999999998888777644
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.86 E-value=7.5e-21 Score=187.85 Aligned_cols=159 Identities=17% Similarity=0.288 Sum_probs=122.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
++||+++|++|||||||+++++.+. ..+.+|++ ++....... ......++|||++|++++..+...+ ++ +
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ 72 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLY----IK--N 72 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcccccchHHHH----Hh--h
Confidence 4689999999999999999999864 35556665 322112111 1223378999999999999888887 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|||++++.+| +++..|+..+.+... ..++|+++||||+|+..
T Consensus 73 ad~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piviv~nK~Dl~~--- 120 (163)
T cd04176 73 GQGFIVVYSLVNQQTF-QDIKPMRDQIVRVKG----------------------------YEKVPIILVGNKVDLES--- 120 (163)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccchh---
Confidence 9999999999999998 888888887665321 13689999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
++.....+...++..+++++++|||+++.|++++++.+...
T Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 121 --EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred --cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 33444456778888889999999999999999999888764
No 58
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.86 E-value=8.6e-21 Score=195.69 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=130.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+||+|+|++|||||||+++|+++. ..+.+|++++|....... ......++|||+||++.+..+...+ ++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~----~~-- 77 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTY----YR-- 77 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHH----hC--
Confidence 36899999999999999999999864 467789988765333321 1122379999999999988888777 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++|+|||++++++| +.+..|++.+.... ..+|++|||||+|+.+
T Consensus 78 ~a~~iilv~D~~~~~s~-~~~~~~~~~i~~~~------------------------------~~~piivVgNK~Dl~~-- 124 (199)
T cd04110 78 GTHGVIVVYDVTNGESF-VNVKRWLQEIEQNC------------------------------DDVCKVLVGNKNDDPE-- 124 (199)
T ss_pred CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECccccc--
Confidence 58999999999999998 88889998765432 1479999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.....++..++..+++.+++|||++|.|+++++++|...++.
T Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 125 ---RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred ---ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 34445677888888899999999999999999999999888754
No 59
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.86 E-value=1.1e-20 Score=188.65 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=127.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+|+|++|||||||+++|++.. ..+.++++.++....... ......+.|||++|++++..+...+ ++ +
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ 76 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSY----YR--G 76 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHH----hc--c
Confidence 5899999999999999999999864 344567776653222221 1222389999999998888777666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|||++++.++ +.+..|+..+++... .++|++||+||+|+.+
T Consensus 77 ~d~il~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~pvivv~nK~Dl~~--- 123 (168)
T cd01866 77 AAGALLVYDITRRETF-NHLTSWLEDARQHSN-----------------------------SNMTIMLIGNKCDLES--- 123 (168)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCcEEEEEECccccc---
Confidence 9999999999999998 889999987766421 2589999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
++....++++.++..+++.++++||+++.|+++++..+.+.++
T Consensus 124 --~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 124 --RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred --ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3445566788889999999999999999999999999888775
No 60
>PLN03110 Rab GTPase; Provisional
Probab=99.86 E-value=9.2e-21 Score=198.40 Aligned_cols=163 Identities=19% Similarity=0.297 Sum_probs=134.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+||+++|++|||||||+++|++... .+.+|++++|........ .....++|||++|+.++..+...+ ++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-~~~~~l~l~Dt~G~~~~~~~~~~~----~~-- 83 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAY----YR-- 83 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHH----hC--
Confidence 468999999999999999999998643 567899988654443322 123489999999999998888777 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++|+|||++++.+| +++..|+..++.... .++|+++||||+|+.
T Consensus 84 ~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~piiiv~nK~Dl~--- 130 (216)
T PLN03110 84 GAVGALLVYDITKRQTF-DNVQRWLRELRDHAD-----------------------------SNIVIMMAGNKSDLN--- 130 (216)
T ss_pred CCCEEEEEEECCChHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEEChhcc---
Confidence 59999999999999998 889999987765321 268999999999984
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
..+....+.++.++..+++++++|||++|.|++++++.|...++.
T Consensus 131 --~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 131 --HLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred --cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 255566677889999999999999999999999999999888865
No 61
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=9.8e-21 Score=187.87 Aligned_cols=159 Identities=19% Similarity=0.279 Sum_probs=125.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+++|++|||||||+++|.++. ..+.++++.++........ .....+++||+||++.+..+...+ ++ +
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~----~~--~ 75 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-GKRVKLQIWDTAGQERFRTITQSY----YR--S 75 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHH----hc--c
Confidence 5899999999999999999998753 3556788777644333221 122378999999998888777666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++++|||++++.++ +.+..|++.+.... ..++|+++|+||+|+..
T Consensus 76 ~d~~llv~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~p~ivv~nK~Dl~~--- 122 (165)
T cd01864 76 ANGAIIAYDITRRSSF-ESVPHWIEEVEKYG-----------------------------ASNVVLLLIGNKCDLEE--- 122 (165)
T ss_pred CCEEEEEEECcCHHHH-HhHHHHHHHHHHhC-----------------------------CCCCcEEEEEECccccc---
Confidence 9999999999999998 88889998776531 23689999999999853
Q ss_pred cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.+......++.++..+++ .++++||++|.|++++++.+...
T Consensus 123 --~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 123 --QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred --ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 344556678889998886 58999999999999998888754
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.86 E-value=1.1e-20 Score=186.58 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|+|++|||||||+++|++.. ..+.+|++..|. ...........+++||+||++++..+...+ ++ ++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~----~~--~~ 72 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR--KQIEIDGEVCLLDILDTAGQEEFSAMRDQY----MR--TG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE--EEEEECCEEEEEEEEECCCcccchHHHHHH----Hh--hC
Confidence 489999999999999999999863 456677664432 222222223489999999999998888777 22 48
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|||+++++++ +.+..|...+.+... ...+|+++||||+|+..
T Consensus 73 ~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~pii~v~nK~Dl~~---- 119 (164)
T smart00173 73 EGFLLVYSITDRQSF-EEIKKFREQILRVKD----------------------------RDDVPIVLVGNKCDLES---- 119 (164)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccccc----
Confidence 999999999999998 888888876654321 12589999999999852
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+....+.+..++..+++++++|||+++.|++++++.|...+
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 120 -ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred -cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 344555677888888999999999999999999999887664
No 63
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=1.2e-20 Score=192.17 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|+|++|||||||+++|+++.. .+.+|++.+|....... ......+++||++|++.+..+...+ ++ ++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~----~~--~~ 73 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSY----YR--GA 73 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHH----cc--CC
Confidence 4899999999999999999998754 36789887765433321 1123478999999998888777776 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|||++++.+| +++..|+..+..... ..+|+++||||+|+.+
T Consensus 74 d~iilv~d~~~~~s~-~~i~~~~~~i~~~~~-----------------------------~~~~~ivv~nK~Dl~~---- 119 (188)
T cd04125 74 HGYLLVYDVTDQESF-ENLKFWINEINRYAR-----------------------------ENVIKVIVANKSDLVN---- 119 (188)
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECCCCcc----
Confidence 999999999999998 888889887765321 2479999999999852
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+.....+.++..++++++++||+++.|++++++.+.+.++.
T Consensus 120 -~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 120 -NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred -cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 44455667788888899999999999999999999999888753
No 64
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=8.1e-21 Score=194.18 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=126.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
||+++|++|||||||+++|+++. ..+.+|++..|. +..........++||||+|++++..+...+ ++ ++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR--KQVVVDGQPCMLEVLDTAGQEEYTALRDQW----IR--EGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE--EEEEECCEEEEEEEEECCCchhhHHHHHHH----HH--hCC
Confidence 58999999999999999999763 456788875542 222111222379999999999998888777 22 599
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++|+|||++++.+| +.+..|++.+...... ....+|++|||||+|+..
T Consensus 73 ~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilvgNK~Dl~~----- 120 (190)
T cd04144 73 GFILVYSITSRSTF-ERVERFREQIQRVKDE--------------------------SAADVPIMIVGNKCDKVY----- 120 (190)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHHHHHhcc--------------------------cCCCCCEEEEEEChhccc-----
Confidence 99999999999998 8899998877654321 123589999999999852
Q ss_pred hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+.+...+...++..+++.++++||++|.|++++++.+...+.
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 4455566678888889999999999999999999999988764
No 65
>PTZ00369 Ras-like protein; Provisional
Probab=99.86 E-value=1.3e-20 Score=192.54 Aligned_cols=164 Identities=20% Similarity=0.269 Sum_probs=129.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
+.++||+|+|++|||||||+++|+++. ..+.||++..|. +..........++||||+|++.+..+...+ ++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~----~~- 75 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR--KQCVIDEETCLLDILDTAGQEEYSAMRDQY----MR- 75 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE--EEEEECCEEEEEEEEeCCCCccchhhHHHH----hh-
Confidence 347899999999999999999999864 466788876652 221112223479999999999999988887 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++|+|||++++++| +.+..|...+.+... ..++|+++|+||+|+..
T Consensus 76 -~~d~iilv~D~s~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piiiv~nK~Dl~~- 124 (189)
T PTZ00369 76 -TGQGFLCVYSITSRSSF-EEIASFREQILRVKD----------------------------KDRVPMILVGNKCDLDS- 124 (189)
T ss_pred -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccccc-
Confidence 59999999999999998 888888887654321 12689999999999842
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+...++..++..+++++++|||++|.|++++++.|...+..
T Consensus 125 ----~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 125 ----ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred ----ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 34445566778888889999999999999999999999877643
No 66
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.86 E-value=1e-20 Score=189.41 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++++++. ..+.+|++.++....... ......+++||++|++.+..+...+ +. ++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~ 73 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGY----YI--GG 73 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHH----hc--CC
Confidence 489999999999999999998753 456788887754322222 2223489999999998887776666 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|||+++++++ +.+..|+..+.+... .+|+++||||+|+..
T Consensus 74 d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------------------~~piiiv~nK~Dl~~---- 118 (166)
T cd00877 74 QCAIIMFDVTSRVTY-KNVPNWHRDLVRVCG------------------------------NIPIVLCGNKVDIKD---- 118 (166)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhCC------------------------------CCcEEEEEEchhccc----
Confidence 999999999999998 888899987765421 589999999999852
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+... ....+++...++.+++|||++|.|++++++.|...+.+
T Consensus 119 --~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 119 --RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred --ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 2222 23456777788999999999999999999999988754
No 67
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=7.8e-21 Score=196.34 Aligned_cols=161 Identities=21% Similarity=0.209 Sum_probs=118.6
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHHcC-------CCCCCCCccc-e-eEEEE----E-E-eccccceEEEEEEcCCCcchhh
Q psy11649 35 ERTLLLIGTKSVGKSTLVF-RFLEK-------NDTPKPTLAL-E-YIYAR----K-S-GKTVMKDICHLWELGSGTSRLE 98 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLIn-rL~~~-------~~~~kptigv-d-Y~f~~----~-~-g~~~~k~~l~IwDlpG~~~~~~ 98 (890)
.+||+++|++|||||||+. +++++ ...+.||++. + |.... + . ........++||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 66553 2356788863 3 32111 0 0 1112234899999999864 2
Q ss_pred HHhhhhccccccccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc
Q psy11649 99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP 177 (890)
Q Consensus 99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP 177 (890)
+...+ ++ +++++|+|||++++.|| +++. .|++.+++.. .++|
T Consensus 80 ~~~~~----~~--~ad~iilv~d~t~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~p 122 (195)
T cd01873 80 DRRFA----YG--RSDVVLLCFSIASPNSL-RNVKTMWYPEIRHFC------------------------------PRVP 122 (195)
T ss_pred hhccc----CC--CCCEEEEEEECCChhHH-HHHHHHHHHHHHHhC------------------------------CCCC
Confidence 33333 33 69999999999999998 7776 6988775432 1489
Q ss_pred EEEEeecccCCCCCC--------------cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 178 LILIGGKYDLFENLE--------------PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 178 iIVVgNK~Dl~~d~d--------------~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
+++||||+|+..... ...+.+..++++++|+++|+.|++|||++|.|++++++.+..
T Consensus 123 iilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 123 VILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred EEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 999999999853100 014677888999999999999999999999999999887764
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.86 E-value=2e-20 Score=184.25 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=123.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+++|++|||||||+++++++. ..+.++++..|. ...........+++||+||++++..+...+ ++ +
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ 73 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT--KQCEIDGQWAILDILDTAGQEEFSAMREQY----MR--T 73 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE--EEEEECCEEEEEEEEECCCCcchhHHHHHH----Hh--h
Confidence 4799999999999999999999863 355677764432 221111122379999999999998888777 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|||++++.++ +.+..|...+.+... ..++|+++|+||+|+..
T Consensus 74 ~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piiiv~NK~Dl~~--- 121 (164)
T cd04145 74 GEGFLLVFSVTDRGSF-EEVDKFHTQILRVKD----------------------------RDEFPMILVGNKADLEH--- 121 (164)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC----------------------------CCCCCEEEEeeCccccc---
Confidence 9999999999999998 888888876655321 23689999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
++....+...+++..++++++++||++|.|++++++.|...
T Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 122 --QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred --cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence 33344556788888899999999999999999999888765
No 69
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.86 E-value=1.6e-20 Score=185.35 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC----CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK----NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~----~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
+||+++|++|||||||+++|.++ ..++.+|++.++..............+.+||++|++.+..+...+ +.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~-- 74 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNY----WE-- 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHH----hC--
Confidence 48999999999999999999863 247778888775432222222223489999999998888877776 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++++|||++++.++ +.+..|++.+.... .++|+++|+||+|+..
T Consensus 75 ~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------~~~p~ilv~nK~Dl~~-- 121 (164)
T cd04101 75 SPSVFILVYDVSNKASF-ENCSRWVNKVRTAS------------------------------KHMPGVLVGNKMDLAD-- 121 (164)
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECccccc--
Confidence 59999999999999998 78889988766531 2589999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++.......+.++..++++++++||+++.|++++++.|.+.+
T Consensus 122 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 122 ---KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ---ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 333444556677888899999999999999999998887653
No 70
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.86 E-value=1.3e-20 Score=190.47 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+.+|+++. ..+.||++..|. ...........++||||+|++.+..+...+ ++ ++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~ 73 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTAGQEDYDRLRPLS----YP--QT 73 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE--EEEEECCEEEEEEEEECCCchhhhhhhhhh----cC--CC
Confidence 689999999999999999999863 577788864432 222222222389999999999888887777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
|++|+|||++++++| +++. .|++.+.... .++|++|||||+|+..+..
T Consensus 74 d~~ilv~d~~~~~sf-~~~~~~~~~~~~~~~------------------------------~~~piilvgnK~Dl~~~~~ 122 (174)
T cd01871 74 DVFLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLRDDKD 122 (174)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEeeChhhccChh
Confidence 999999999999999 6664 6887665421 1589999999999853110
Q ss_pred -------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHH
Q psy11649 193 -------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 193 -------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~ 234 (890)
...+.+..+++..+|+.+++ .+++|||++|.|++++++.+..
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 123 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 01234667888999999995 8999999999999999888764
No 71
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.85 E-value=1.6e-20 Score=198.01 Aligned_cols=163 Identities=17% Similarity=0.224 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|||++|||||||+++|+++. ..|.||++.+|.. ... .......++||||+|++.|..+...+ |+ ++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~-~~~~~v~L~iwDt~G~e~~~~l~~~~----~~--~~ 73 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFE-IDKRRIELNMWDTSGSSYYDNVRPLA----YP--DS 73 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEE-ECCEEEEEEEEeCCCcHHHHHHhHHh----cc--CC
Confidence 689999999999999999999864 4688999877642 111 12223489999999999998888777 33 69
Q ss_pred cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
|++|+|||++++++| +++ ..|...++... .++|++|||||+|+..+..
T Consensus 74 d~illvfdis~~~Sf-~~i~~~w~~~~~~~~------------------------------~~~piiLVgnK~DL~~~~~ 122 (222)
T cd04173 74 DAVLICFDISRPETL-DSVLKKWQGETQEFC------------------------------PNAKVVLVGCKLDMRTDLA 122 (222)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEEECcccccchh
Confidence 999999999999999 665 67876554321 2589999999999854211
Q ss_pred c-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCC-HHHHHHHHHHHHh
Q psy11649 193 P-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGL-VKRTRDILNHYAF 237 (890)
Q Consensus 193 ~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~n-Id~Lk~~I~~~lf 237 (890)
. ....+..++...+|+++|+ .|+||||+++.| +++++........
T Consensus 123 ~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 123 TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred hhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence 0 0112566789999999996 899999999985 9999888777653
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=1.3e-20 Score=192.68 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|+|++|||||||+++|+++. ..+.||++.+|. ...........++|||++|++.+..+...+ ++ ++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~--~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~----~~--~a 72 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV--HDIFVDGLHIELSLWDTAGQEEFDRLRSLS----YA--DT 72 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE--EEEEECCEEEEEEEEECCCChhcccccccc----cc--CC
Confidence 489999999999999999999864 356788886653 222111222489999999998887776666 33 59
Q ss_pred cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+++|+|||++++.+| +++. .|++.+.... .++|++|||||+|+.....
T Consensus 73 ~~~ilv~dv~~~~sf-~~~~~~~~~~i~~~~------------------------------~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 73 DVIMLCFSVDSPDSL-ENVESKWLGEIREHC------------------------------PGVKLVLVALKCDLREARN 121 (189)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEEChhhccChh
Confidence 999999999999999 6665 6887776421 1589999999999863211
Q ss_pred cc-------hhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 193 PN-------KKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 193 ~e-------~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.. .+.+...+...++...+ +.+++|||++|.|++++++.+...+..
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 122 ERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 00 01234556778888887 689999999999999999999888753
No 73
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=2.9e-20 Score=183.32 Aligned_cols=158 Identities=21% Similarity=0.289 Sum_probs=124.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|+|++|||||||+++|+++. ..+.++++.++........ .....+++||+||++.+..+...+ ++ ++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~----~~--~~ 73 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQERFRSVTRSY----YR--GA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHHHHHhHHHH----hc--CC
Confidence 589999999999999999999864 3456777766543222211 222489999999998888777766 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|||++++.++ .++..|+..++... ..++|+++|+||+|+..
T Consensus 74 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iivv~nK~D~~~---- 119 (161)
T cd04113 74 AGALLVYDITNRTSF-EALPTWLSDARALA-----------------------------SPNIVVILVGNKSDLAD---- 119 (161)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCeEEEEEEchhcch----
Confidence 999999999999998 88888987665432 22589999999999952
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.+....++++.++..+++.++++||+++.|++++++.+...
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 120 -QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred -hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44555677888999999999999999999999998887653
No 74
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.85 E-value=3.6e-20 Score=182.10 Aligned_cols=158 Identities=17% Similarity=0.250 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|++... .+.++++.+|........ ....++++||+||+.++..++..+ ++ ++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~----~~--~~ 73 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-DKTVRLQLWDTAGQERFRSLIPSY----IR--DS 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHH----hc--cC
Confidence 4899999999999999999998643 556888877543333221 122479999999999888877777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|||++++++| +.+..|+..+.... +.++|+++|+||+|+.
T Consensus 74 ~~ii~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilv~nK~D~~----- 118 (161)
T cd01861 74 SVAVVVYDITNRQSF-DNTDKWIDDVRDER-----------------------------GNDVIIVLVGNKTDLS----- 118 (161)
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCEEEEEEEChhcc-----
Confidence 999999999999998 88888888665421 1258999999999984
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+++.....+...++..+++.++++||+++.|++++++.|...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 119 DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 244555667888888889999999999999999999988764
No 75
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.85 E-value=4.3e-20 Score=181.52 Aligned_cols=160 Identities=19% Similarity=0.312 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|++.. ..+.++++.++...... .......+++||+||+..+..+...+ ++ ++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~~~~~~----~~--~~ 73 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQERFRSITSSY----YR--GA 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEE-ECCEEEEEEEEECCChHHHHHHHHHH----hC--CC
Confidence 489999999999999999999864 35557777665422222 11222379999999998888777777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|||+++++++ +.+..|++.+..+.. .++|+++|+||+|+..
T Consensus 74 d~~ilv~d~~~~~s~-~~~~~~l~~~~~~~~-----------------------------~~~pivvv~nK~D~~~---- 119 (164)
T smart00175 74 VGALLVYDITNRESF-ENLKNWLKELREYAD-----------------------------PNVVIMLVGNKSDLED---- 119 (164)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEEchhccc----
Confidence 999999999999998 778889887655321 2699999999999852
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+....+.+++++..+++.++++||+++.|++++.+.|...++
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 120 -QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred -ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 2344456677888889999999999999999999999988763
No 76
>KOG0081|consensus
Probab=99.85 E-value=1.1e-21 Score=190.78 Aligned_cols=165 Identities=16% Similarity=0.265 Sum_probs=136.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEec----c-c---cceEEEEEEcCCCcchhhHHhhh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGK----T-V---MKDICHLWELGSGTSRLEVASLF 103 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~----~-~---~k~~l~IwDlpG~~~~~~Li~~~ 103 (890)
.-+|.+.+|++||||||++.+++.+.+ ....|+|+||.-+++... . . .+..+++|||+|+++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 346889999999999999999999754 557899999876555511 1 1 12278999999999999999998
Q ss_pred hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
++ +|.+++++||+++..|| -++..|+..++.+.=- + ...||++||
T Consensus 88 ----fR--DAMGFlLiFDlT~eqSF-LnvrnWlSQL~~hAYc------------------E----------~PDivlcGN 132 (219)
T KOG0081|consen 88 ----FR--DAMGFLLIFDLTSEQSF-LNVRNWLSQLQTHAYC------------------E----------NPDIVLCGN 132 (219)
T ss_pred ----HH--hhccceEEEeccchHHH-HHHHHHHHHHHHhhcc------------------C----------CCCEEEEcC
Confidence 33 59999999999999999 8899999988765311 1 235899999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
|+|+. .+|.+....++++|.+||.+||+|||-+|.|+++.-+.+..+++.
T Consensus 133 K~DL~-----~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 133 KADLE-----DQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred ccchh-----hhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHH
Confidence 99995 489999999999999999999999999999999988888777653
No 77
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=5.1e-20 Score=182.85 Aligned_cols=155 Identities=20% Similarity=0.256 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
+||+++|++|||||||+++|+++.. .+.++.+.++. .... .......+++|||+|++++..+...+ ++ +
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ 72 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLY--KHNAKFEGKTILVDFWDTAGQERFQTMHASY----YH--K 72 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEE--EEEEEECCEEEEEEEEeCCCchhhhhhhHHH----hC--C
Confidence 4899999999999999999998643 34455554432 2221 11223379999999999998888877 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|||++++.++ +.+..|+..+++.. .++|+++|+||+|+..
T Consensus 73 ~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~------------------------------~~~p~ivv~nK~Dl~~--- 118 (161)
T cd04124 73 AHACILVFDVTRKITY-KNLSKWYEELREYR------------------------------PEIPCIVVANKIDLDP--- 118 (161)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhC------------------------------CCCcEEEEEECccCch---
Confidence 9999999999999998 78889998775421 1489999999999831
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
. .......++..++++++++||++|.|++++++.+...+.
T Consensus 119 ---~--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 119 ---S--VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred ---h--HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 123455677788899999999999999999999887653
No 78
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.85 E-value=2.1e-20 Score=193.95 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=122.1
Q ss_pred EcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEE
Q psy11649 41 IGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVL 118 (890)
Q Consensus 41 VGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~III 118 (890)
||++|||||||+++|+++. ..+.+|+|.++....... ......++||||+|++++..+...+ ++ +++++|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e~~~~l~~~~----~~--~ad~~il 73 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQEKFGGLRDGY----YI--QGQCAII 73 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHH----hc--CCCEEEE
Confidence 6999999999999999754 367789987765332221 1223489999999999999888877 33 5999999
Q ss_pred EEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhh
Q psy11649 119 MLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI 198 (890)
Q Consensus 119 V~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~ 198 (890)
|||++++.+| +++..|.+.+++.. .++|++|||||+|+.. +.+
T Consensus 74 V~D~t~~~S~-~~i~~w~~~i~~~~------------------------------~~~piilvgNK~Dl~~------~~v 116 (200)
T smart00176 74 MFDVTARVTY-KNVPNWHRDLVRVC------------------------------ENIPIVLCGNKVDVKD------RKV 116 (200)
T ss_pred EEECCChHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECccccc------ccC
Confidence 9999999998 88899999887632 1589999999999842 222
Q ss_pred hHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 199 AVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 199 i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
..+. ..++...++.+++|||++|.|++++++.|...++.
T Consensus 117 ~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 117 KAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred CHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3333 36788889999999999999999999999988754
No 79
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.84 E-value=4.6e-20 Score=188.10 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=127.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.||+|+|++|||||||+++|+++.. .+.+|++.+|...... .......+++||++|++++..+...+ ++ +
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~~~~~~~~----~~--~ 73 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMV-VGERVVTLGIWDTAGSERYEAMSRIY----YR--G 73 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEE-ECCEEEEEEEEECCCchhhhhhhHhh----cC--C
Confidence 4899999999999999999998643 4778888765332222 12222378999999999888777666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|||++++.++ +.+..|++.+.... .++|+++|+||+|+.+..
T Consensus 74 ~d~iilv~d~~~~~s~-~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~~~~- 121 (193)
T cd04118 74 AKAAIVCYDLTDSSSF-ERAKFWVKELQNLE------------------------------EHCKIYLCGTKSDLIEQD- 121 (193)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHhcC------------------------------CCCCEEEEEEcccccccc-
Confidence 9999999999999998 77888888665421 158999999999985321
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
...+.+...++.+++..++++++++||+++.|++++++.|.+.+..
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred cccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1234455567888899999999999999999999999999988743
No 80
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=7.6e-21 Score=231.03 Aligned_cols=271 Identities=13% Similarity=0.075 Sum_probs=159.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccc-cceEEEEEEcCCCcchhhHHh------hh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTV-MKDICHLWELGSGTSRLEVAS------LF 103 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~-~k~~l~IwDlpG~~~~~~Li~------~~ 103 (890)
+..+|+++|+||||||||+|+|++.. ++. ++++++ ++.+... .+.++++|||||.+++..... ..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~-pGvTve----~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i 76 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW-AGVTVE----RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI 76 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCC-CCceEe----eEEEEEEcCceEEEEEECCCccccccccccccHHHHH
Confidence 35789999999999999999999853 344 666766 3333222 233799999999988743211 11
Q ss_pred hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
....+....+|++|+|+|.++.++ ++. |..++.+ .++|+++|+|
T Consensus 77 ~~~~l~~~~aD~vI~VvDat~ler---~l~-l~~ql~e--------------------------------~giPvIvVlN 120 (772)
T PRK09554 77 ACHYILSGDADLLINVVDASNLER---NLY-LTLQLLE--------------------------------LGIPCIVALN 120 (772)
T ss_pred HHHHHhccCCCEEEEEecCCcchh---hHH-HHHHHHH--------------------------------cCCCEEEEEE
Confidence 000011124899999999998765 343 2222221 3689999999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCC-Cccc
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFG-TDSV 262 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G-~Ds~ 262 (890)
|+|+. ++.....+.+++++.+|++++++||+++.|++++++.+....-.. .....+ .|.. .+.+
T Consensus 121 K~Dl~------~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~~~~---~~~~~~------yp~~le~~I 185 (772)
T PRK09554 121 MLDIA------EKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQANE---NVELVH------YPQPLLNEA 185 (772)
T ss_pred chhhh------hccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhhhcc---CCcccC------CCHHHHHHH
Confidence 99985 233445678889999999999999999999999999998764110 000000 1100 1112
Q ss_pred cccccCCCCCCC-CccccccccccccchhHHHhh----cccccchhhccCChhhhHHHHHHHHh--HHHhhccceeccCC
Q psy11649 263 ASIEGTTHGKDA-SLESGGRGFNRSRGMKFEKKR----GWIEGTVTARNLEPNKKRIAVQCLRY--LAHVNGASLLFHSS 335 (890)
Q Consensus 263 ~~I~~pl~r~~~-~~~~~~~~~~~~~~~~f~~~~----~w~~~~~~~~~~~~~~~~~~e~~~ry--~~~~~~~~~~~~~~ 335 (890)
+++...+....+ ...++.+....+.+....... ..+++...........-....+-.|| |..+++.++.....
T Consensus 186 ~~l~~~L~e~iae~~~RwLAiKlLEgD~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~~~ 265 (772)
T PRK09554 186 DSLAKVMPSDIPLQQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTLTA 265 (772)
T ss_pred HHHHHHhhhhhccccchHHHHHHhcCchHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 222211100000 112232323333332111100 00111111100000111233455677 99999999876555
Q ss_pred CCCChhhhhhhhhhccccccccccc
Q psy11649 336 LDPGLVKRTRDILNHYAFSSHLASA 360 (890)
Q Consensus 336 ~~~~~~~~~d~~l~h~~~~~~~~~~ 360 (890)
...++++|+|+|++||+||--.|-.
T Consensus 266 ~~~~~s~~iD~i~~~~~~G~pifl~ 290 (772)
T PRK09554 266 EPSRLTTALDKIILNRWLGLPIFLF 290 (772)
T ss_pred CCCCHHHHhHHHHhcchhHHHHHHH
Confidence 6778999999999999999855433
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.84 E-value=7.7e-20 Score=182.98 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=123.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh-hHHhhhhccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL-EVASLFSSFSLTAQ 111 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~-~Li~~~r~~~~~~~ 111 (890)
.+||+++|++|||||||+++|+++. ..+.++++.+|....... ......++|||++|++++. .+...+ ++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~----~~-- 74 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHY----YR-- 74 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHh----hc--
Confidence 4799999999999999999999864 356678877754322221 1223489999999998875 455555 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|||++++.++ +.+..|++.+..... ...+|+++|+||+|+..
T Consensus 75 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~iiv~nK~Dl~~-- 123 (170)
T cd04115 75 NVHAVVFVYDVTNMASF-HSLPSWIEECEQHSL----------------------------PNEVPRILVGNKCDLRE-- 123 (170)
T ss_pred CCCEEEEEEECCCHHHH-HhHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccchh--
Confidence 58999999999999998 888899987765421 13689999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccC---CCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLD---PGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~---~~nId~Lk~~I~~~l 236 (890)
.+.+......+++..+++++++|||++ +.|+++++..+.+.+
T Consensus 124 ---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 124 ---QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ---hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 455566778889999999999999999 788888877766543
No 82
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.84 E-value=6.5e-20 Score=185.89 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|+|++|||||||+++|+++. ..+.++++.+|.. ...........++||||+|++++..+...+ ++ ++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~a 73 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLS----YP--DV 73 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHh----CC--CC
Confidence 489999999999999999999864 3566777766532 222221223479999999999888877766 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
|++|+|||++++.+| +++. .|+..+.... .++|+++||||+|+.....
T Consensus 74 d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~~~~ 122 (187)
T cd04132 74 DVLLICYAVDNPTSL-DNVEDKWFPEVNHFC------------------------------PGTPIMLVGLKTDLRKDKN 122 (187)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEeChhhhhCcc
Confidence 999999999999998 6664 5877554321 2589999999999853211
Q ss_pred cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 193 PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
..+.+...++++++..+++ .+++|||++|.|++++++.+...+..
T Consensus 123 -~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 123 -LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred -ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 1234566788999999998 89999999999999999999888754
No 83
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.84 E-value=5.5e-20 Score=183.62 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=121.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
|+|+|++|||||||+++|+++. ..+.++++..|. ...........+++|||+|++.+..+...+ ++ ++|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS--ADVEVDGKPVELGLWDTAGQEDYDRLRPLS----YP--DTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee--EEEEECCEEEEEEEEECCCCcccchhchhh----cC--CCCE
Confidence 6899999999999999999864 355667664443 222212222379999999999888777666 22 5999
Q ss_pred EEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC--
Q psy11649 116 LVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE-- 192 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d-- 192 (890)
+|+|||++++++| +++ ..|+..+.+.. .++|++|||||+|+..+..
T Consensus 73 ~ilv~d~~~~~s~-~~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~~~~~~~ 121 (174)
T smart00174 73 FLICFSVDSPASF-ENVKEKWYPEVKHFC------------------------------PNTPIILVGTKLDLREDKSTL 121 (174)
T ss_pred EEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEecChhhhhChhhh
Confidence 9999999999999 666 46888765421 2589999999999853210
Q ss_pred -----cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 -----PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 -----~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
...+.+..+++.++++.+|+ .+++|||+++.|++++++.+...+
T Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 122 RELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 11233566778899999997 899999999999999999887765
No 84
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.84 E-value=5.2e-20 Score=190.54 Aligned_cols=168 Identities=15% Similarity=0.074 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHh-h---hhccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVAS-L---FSSFSLT 109 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~-~---~r~~~~~ 109 (890)
+||+|+|++|||||||+++|+++. ..+.||++.++.. ...........++||||||...+..... . .+...++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYR-PAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccce-eEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 489999999999999999999864 3567888755321 1111112223789999999765421111 0 0111133
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++++| +.+..|.+.+.+... ....++|++|||||+|+..
T Consensus 80 --~ad~iilv~D~~~~~S~-~~~~~~~~~i~~~~~--------------------------~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 80 --NSRAFILVYDICSPDSF-HYVKLLRQQILETRP--------------------------AGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcc--------------------------cCCCCCCEEEEEECccccc
Confidence 69999999999999998 788888877665431 0123689999999999952
Q ss_pred CCCcchhhhhHHHHHHHHH-HcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~-~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+....+.++.++. .+++++++|||++|.|++++++.+...++.
T Consensus 131 -----~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 131 -----HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred -----cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 34444556667654 568999999999999999999988887753
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.84 E-value=1.1e-19 Score=181.21 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=124.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
++||+++|++|||||||+++|+++. ..+.++++..| .+..........+++||+||+.++..+...+ ++ +
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ 72 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY--RKQVEIDGRQCDLEILDTAGTEQFTAMRELY----IK--S 72 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE--EEEEEECCEEEEEEEEeCCCcccchhhhHHH----Hh--h
Confidence 4789999999999999999999864 35667776443 2222222222489999999999998888887 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|||+++++++ +.+..|...+.+... ..++|+++|+||+|+..
T Consensus 73 ~~~~vlv~~~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piiiv~nK~D~~~--- 120 (168)
T cd04177 73 GQGFLLVYSVTSEASL-NELGELREQVLRIKD----------------------------SDNVPMVLVGNKADLED--- 120 (168)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC----------------------------CCCCCEEEEEEChhccc---
Confidence 8999999999999998 788888887765321 13689999999999852
Q ss_pred cchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+....++...++..++ ++++++||+++.|++++++.+...+
T Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 121 --DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred --cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 44455666778888888 7899999999999999988887654
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.83 E-value=1.9e-19 Score=176.01 Aligned_cols=159 Identities=15% Similarity=0.235 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|.+|||||||+++|++... .+.++++.++........ .....+++||++|+..+..+...+ ++ ++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~----~~--~~ 73 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-GKRIDLAIWDTAGQERYHALGPIY----YR--DA 73 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-CEEEEEEEEECCchHHHHHhhHHH----hc--cC
Confidence 5899999999999999999998643 344555545432222211 222379999999998888877776 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|+|++++.++ +.+..|++.+..... .++|+++|+||+|+..
T Consensus 74 ~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piiiv~nK~D~~~---- 119 (162)
T cd04123 74 DGAILVYDITDADSF-QKVKKWIKELKQMRG-----------------------------NNISLVIVGNKIDLER---- 119 (162)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECccccc----
Confidence 999999999999997 778888877655321 1689999999999852
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.++...+.++++++.+++.++++|++++.|++++++.+.+.+
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 120 -QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred -ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 344445677788888999999999999999999999987654
No 87
>PLN03108 Rab family protein; Provisional
Probab=99.83 E-value=1.8e-19 Score=187.78 Aligned_cols=163 Identities=17% Similarity=0.236 Sum_probs=128.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+||+|+|++|||||||+++|++.. ..+.+|++.+|........ .....+++||++|++.+..+...+ ++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-~~~i~l~l~Dt~G~~~~~~~~~~~----~~-- 77 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSY----YR-- 77 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHH----hc--
Confidence 35899999999999999999999863 4556788877643322221 122378999999999888777666 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|||++++.++ +.+..|+..+.+.. ...+|+++|+||+|+..
T Consensus 78 ~ad~~vlv~D~~~~~s~-~~l~~~~~~~~~~~-----------------------------~~~~piiiv~nK~Dl~~-- 125 (210)
T PLN03108 78 GAAGALLVYDITRRETF-NHLASWLEDARQHA-----------------------------NANMTIMLIGNKCDLAH-- 125 (210)
T ss_pred cCCEEEEEEECCcHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccCcc--
Confidence 49999999999999998 78888887654432 12589999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+...+..++++.++++++++||+++.|++++++.+...++.
T Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 126 ---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred ---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45566678889999999999999999999999998888877754
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.83 E-value=2e-19 Score=177.09 Aligned_cols=158 Identities=19% Similarity=0.268 Sum_probs=124.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|++.. ..+.++.+.+|....... ......+++||+||+..+..+...+ ++ ++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~----~~--~~ 73 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSY----YR--GA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHH----hC--CC
Confidence 489999999999999999999864 346788887764322221 1222479999999998887777666 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++++|+|++++.++ +.+..|++.+.++.. ..++|+++||||+|+.
T Consensus 74 d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~~~~iv~nK~D~~----- 119 (161)
T cd01863 74 QGVILVYDVTRRDTF-TNLETWLNELETYST----------------------------NNDIVKMLVGNKIDKE----- 119 (161)
T ss_pred CEEEEEEECCCHHHH-HhHHHHHHHHHHhCC----------------------------CCCCcEEEEEECCccc-----
Confidence 999999999999998 788889887765432 2368999999999995
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.+.....+..+++..++++++++||++|.|++++.+.+...
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 120 -NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 33344566788888899999999999999999998887654
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.83 E-value=2.3e-19 Score=176.76 Aligned_cols=160 Identities=18% Similarity=0.287 Sum_probs=124.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
++||+++|++|||||||+++|+++.. .+.++.+.+|....... ......++|||+||++++..+...+ ++ +
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~~~~~~~~~~----~~--~ 73 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQERYRSLAPMY----YR--G 73 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHH----hc--c
Confidence 47999999999999999999999743 35678776553322221 2223389999999998888777766 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|+|+++++++ +.+..|+..+.... ...+|+++|+||+|+..
T Consensus 74 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iivv~nK~D~~~--- 120 (163)
T cd01860 74 AAAAIVVYDITSEESF-EKAKSWVKELQRNA-----------------------------SPNIIIALVGNKADLES--- 120 (163)
T ss_pred CCEEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCeEEEEEECccccc---
Confidence 9999999999999998 78888888765532 13689999999999852
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+......+..++..+++.++++||++|.|++.+++.|...+
T Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 121 --KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred --cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344445567788888899999999999999999999887764
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.83 E-value=2.9e-19 Score=177.30 Aligned_cols=165 Identities=16% Similarity=0.290 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|++.. ..+.++++.+|....... ......+++||+||+..+..+...+ ++ ++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~----~~--~~ 73 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAF----YR--GA 73 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHH----hc--CC
Confidence 489999999999999999999864 344567776654322221 1123478999999998888877776 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|||++++.++ +++..|.+.+...... .+..++|+++|+||+|+..
T Consensus 74 d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~ilv~nK~Dl~~---- 123 (172)
T cd01862 74 DCCVLVYDVTNPKSF-ESLDSWRDEFLIQASP-------------------------SDPENFPFVVLGNKIDLEE---- 123 (172)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhcCc-------------------------cCCCCceEEEEEECccccc----
Confidence 999999999999987 7788888765543321 2233689999999999952
Q ss_pred chhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 194 NKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+....+..+.++...+ ..++++||++|.|++++++.|...++.
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 124 -KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred -ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 23334556777888887 789999999999999999999888754
No 91
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=1.4e-19 Score=181.91 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=122.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
.+.+||+++|++|||||||+++|+++. .++.||++.+|........ .....+.+||++|++.+..+...+ ++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~----~~ 76 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVY-GQEKYLILREVGEDEVAILLNDAE----LA 76 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEEC-CeEEEEEEEecCCcccccccchhh----hh
Confidence 357899999999999999999999974 4588999887653222221 222378999999998887776665 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++++|+|++++.++ +.+..|++.+.. ..++|+++|+||+|+..
T Consensus 77 --~~d~~llv~d~~~~~s~-~~~~~~~~~~~~-------------------------------~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 77 --ACDVACLVYDSSDPKSF-SYCAEVYKKYFM-------------------------------LGEIPCLFVAAKADLDE 122 (169)
T ss_pred --cCCEEEEEEeCCCHHHH-HHHHHHHHHhcc-------------------------------CCCCeEEEEEEcccccc
Confidence 59999999999999887 677777753211 12589999999999852
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+........++++.+++. ++++||+++.|++++++.|...+.
T Consensus 123 -----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 123 -----QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred -----cccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 2333334566788888874 799999999999999999887763
No 92
>PLN03118 Rab family protein; Provisional
Probab=99.83 E-value=3.9e-19 Score=184.86 Aligned_cols=168 Identities=17% Similarity=0.223 Sum_probs=128.4
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
.....+||+|+|++|||||||+++|+++. ..+.++++.++....... ......+.||||||++++..+...+ ++
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~----~~ 84 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSY----YR 84 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHH----Hh
Confidence 34457899999999999999999999864 366788887754333321 1122378999999999998888777 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHH-HHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAET-FLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~-wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+++++|+|||++++.+| +.+.. |...+.... ...++|+++|+||+|+.
T Consensus 85 --~~d~~vlv~D~~~~~sf-~~~~~~~~~~~~~~~----------------------------~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 85 --NAQGIILVYDVTRRETF-TNLSDVWGKEVELYS----------------------------TNQDCVKMLVGNKVDRE 133 (211)
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhc----------------------------CCCCCCEEEEEECcccc
Confidence 59999999999999998 66654 665443321 11257999999999985
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
. .+....++...++..+++.+++|||+++.|++++++.|...++..
T Consensus 134 ~-----~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 134 S-----ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred c-----cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 2 334445667788888999999999999999999999999888653
No 93
>KOG0097|consensus
Probab=99.82 E-value=9.4e-20 Score=174.07 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=133.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccc-cceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTV-MKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~-~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
+.-+|.+++|+-|||||+|+++|+++.+ .-..|+|++|- ++..... .+.+++|||++|+++|+.+...| |+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefg--triievsgqkiklqiwdtagqerfravtrsy----yr 82 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG--TRIIEVSGQKIKLQIWDTAGQERFRAVTRSY----YR 82 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecc--eeEEEecCcEEEEEEeecccHHHHHHHHHHH----hc
Confidence 4568999999999999999999999753 33478998864 4443332 34499999999999999999999 44
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++.+.++|||++...++ +.|..|+...+. ..+.+..++++|||.|+.
T Consensus 83 --gaagalmvyditrrsty-nhlsswl~dar~-----------------------------ltnpnt~i~lignkadle- 129 (215)
T KOG0097|consen 83 --GAAGALMVYDITRRSTY-NHLSSWLTDARN-----------------------------LTNPNTVIFLIGNKADLE- 129 (215)
T ss_pred --cccceeEEEEehhhhhh-hhHHHHHhhhhc-----------------------------cCCCceEEEEecchhhhh-
Confidence 69999999999999998 999999975443 444567899999999995
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+|++..+++.+|+..+|..++++|||+|.|++..+-.-...+|
T Consensus 130 ----~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiy 173 (215)
T KOG0097|consen 130 ----SQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIY 173 (215)
T ss_pred ----hcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999987544444443
No 94
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.82 E-value=1.7e-19 Score=179.04 Aligned_cols=159 Identities=23% Similarity=0.262 Sum_probs=118.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhhhccccccccC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLFSSFSLTAQSG 113 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~~a 113 (890)
||+++|++|||||||+++|+++. ..+.++++..|. ...........+++||+||+.++ ......+ ++ ++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~----~~--~~ 72 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS--RQVTIDGEQVSLEILDTAGQQQADTEQLERS----IR--WA 72 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce--EEEEECCEEEEEEEEECCCCcccccchHHHH----HH--hC
Confidence 58999999999999999998753 356677654442 22211122237999999998752 2333333 22 49
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|||++++++| +.+..|+..+.+... ...++|+++||||+|+.
T Consensus 73 d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~---------------------------~~~~~piilv~nK~Dl~----- 119 (165)
T cd04146 73 DGFVLVYSITDRSSF-DEISQLKQLIREIKK---------------------------RDREIPVILVGNKADLL----- 119 (165)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHHhc---------------------------CCCCCCEEEEEECCchH-----
Confidence 999999999999998 888999887765321 02358999999999984
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCC-CCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDP-GLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~-~nId~Lk~~I~~~l 236 (890)
+.+.+..+++.+++..+++++++|||+++ .|++++++.+...+
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 120 HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 24555667788899999999999999999 49999998887654
No 95
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.82 E-value=2.7e-19 Score=178.39 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+.+|+.+.. .+.| ++..|. ..... ......++|||++|++.. .+ ++ ++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-~~~~~~-~~i~~-~~~~~~l~i~D~~g~~~~-----~~----~~--~~ 66 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESP-EGGRFK-KEVLV-DGQSHLLLIRDEGGAPDA-----QF----AS--WV 66 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCC-CccceE-EEEEE-CCEEEEEEEEECCCCCch-----hH----Hh--cC
Confidence 4799999999999999999987632 3333 344542 22221 112237999999999642 22 11 48
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|||++++.|| +++..|+..+.... +...+|+++||||+|+.. .
T Consensus 67 ~~~ilv~d~~~~~sf-~~~~~~~~~i~~~~----------------------------~~~~~piilvgnK~Dl~~---~ 114 (158)
T cd04103 67 DAVIFVFSLENEASF-QTVYNLYHQLSSYR----------------------------NISEIPLILVGTQDAISE---S 114 (158)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEeeHHHhhh---c
Confidence 999999999999999 88888988776532 112589999999999841 1
Q ss_pred chhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
..+.+...+.+++++.. ++.+++|||++|.||+++++.+...
T Consensus 115 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 24566777888999876 4899999999999999998877643
No 96
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.82 E-value=2.4e-19 Score=179.90 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=119.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|.++. .++.+|....|. ...........+++||++|+.++..+...+ ++ ++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~a 72 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFS--VVVLVDGKPVRLQLCDTAGQDEFDKLRPLC----YP--DT 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee--EEEEECCEEEEEEEEECCCChhhccccccc----cC--CC
Confidence 489999999999999999998753 456666543322 112111223488999999998887776666 22 69
Q ss_pred cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+++|+|||++++++| +.+ ..|+..+.... .++|+++||||+|+.....
T Consensus 73 ~~~i~v~d~~~~~sf-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 73 DVFLLCFSVVNPSSF-QNISEKWIPEIRKHN------------------------------PKAPIILVGTQADLRTDVN 121 (173)
T ss_pred cEEEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEeeChhhccChh
Confidence 999999999999998 555 46887665321 1489999999999853211
Q ss_pred -------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHH
Q psy11649 193 -------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 193 -------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~ 233 (890)
..++.+..++++.+++.+++ .+++|||++|.|++++++.+.
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 12456677889999999998 899999999999999976653
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=2.5e-19 Score=180.00 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=110.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
+.+||+++|++|||||||+++|+.+. ..+.||++.++. .... .+.++++||++|++++..+...+ ++ +
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~~--~ 76 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY---KNVKFNVWDVGGQDKIRPLWRHY----YT--G 76 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--c
Confidence 46899999999999999999998643 356788887653 2222 34589999999999988887777 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|||++++.++ +++..|+..+.... ...++|++||+||+|+...
T Consensus 77 a~~ii~v~D~t~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~-- 125 (168)
T cd04149 77 TQGLIFVVDSADRDRI-DEARQELHRIINDR----------------------------EMRDALLLVFANKQDLPDA-- 125 (168)
T ss_pred CCEEEEEEeCCchhhH-HHHHHHHHHHhcCH----------------------------hhcCCcEEEEEECcCCccC--
Confidence 9999999999999887 55555554332110 0125899999999998421
Q ss_pred cchhhhhHHHHHHHHH-----HcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAH-----VNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~-----~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
...++++.++. ..++.+++|||++|.|++++++.|.
T Consensus 126 -----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 126 -----MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred -----CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 12233444332 1234689999999999999987764
No 98
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.82 E-value=3.6e-19 Score=190.61 Aligned_cols=167 Identities=15% Similarity=0.172 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++. ..+.||++ ++...... .......++||||+|++.+..+...+ +. ++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~-i~~~~~~l~I~Dt~G~~~~~~~~~~~----~~--~a 72 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYS-IRGEVYQLDILDTSGNHPFPAMRRLS----IL--TG 72 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEE-ECCEEEEEEEEECCCChhhhHHHHHH----hc--cC
Confidence 489999999999999999998764 35667776 43221111 11222489999999998887776665 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|||++++++| +++..|++.+.+....+.. ......++|++||+||+|+..
T Consensus 73 d~iIlVfdv~~~~Sf-~~i~~~~~~I~~~k~~~~~--------------------~~~~~~~~piIivgNK~Dl~~---- 127 (247)
T cd04143 73 DVFILVFSLDNRESF-EEVCRLREQILETKSCLKN--------------------KTKENVKIPMVICGNKADRDF---- 127 (247)
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHHHHHHhhccccc--------------------ccccCCCCcEEEEEECccchh----
Confidence 999999999999998 8888998887654211000 001223689999999999952
Q ss_pred chhhhhHHHHHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.+...++.+++.. .++.+++|||+++.|++++++.|...+
T Consensus 128 -~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 128 -PREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred -ccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 344455666666653 468899999999999999999998865
No 99
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.82 E-value=3.9e-19 Score=177.44 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|+++.. .+.++++..|.. ..........+++||++|+..+..+...+ ++ ++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~ 72 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV--SVTVGGKQYLLGLYDTAGQEDYDRLRPLS----YP--MT 72 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE--EEEECCEEEEEEEEeCCCccccccccccc----CC--CC
Confidence 4899999999999999999998643 455666533322 11111222378999999998887766655 22 58
Q ss_pred cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+++|+|||++++.+| +.+ ..|.+.++.. ..++|+++||||+|+..+..
T Consensus 73 ~~~ilv~~~~~~~s~-~~~~~~~~~~l~~~------------------------------~~~~piivv~nK~Dl~~~~~ 121 (174)
T cd04135 73 DVFLICFSVVNPASF-QNVKEEWVPELKEY------------------------------APNVPYLLVGTQIDLRDDPK 121 (174)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhh------------------------------CCCCCEEEEeEchhhhcChh
Confidence 999999999999998 555 4687766542 12589999999999853211
Q ss_pred c-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 P-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
. ..+.+...++..+++.+|+ .+++|||+++.|++++++.+...+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 0 1235566788899999996 699999999999999988876654
No 100
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.81 E-value=7.3e-19 Score=172.53 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|++|||||||+++|++.. ..+.++++..|. +..........+++||+||+..+..+...+ ++ ++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~--~~ 72 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR--KKVVLDGEDVQLNILDTAGQEDYAAIRDNY----HR--SG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE--EEEEECCEEEEEEEEECCChhhhhHHHHHH----hh--cC
Confidence 489999999999999999999863 355666664432 222222223479999999999888887777 22 48
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|+|++++.++ +++..|...+..... ...+|+++|+||+|+..
T Consensus 73 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piiiv~NK~D~~~---- 119 (164)
T cd04139 73 EGFLLVFSITDMESF-TATAEFREQILRVKD----------------------------DDNVPLLLVGNKCDLED---- 119 (164)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEEcccccc----
Confidence 999999999999998 778888776654321 23699999999999853
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.......+.++..++++++++||+++.|++++++.+.+.+
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 120 -KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred -ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 233345566778888899999999999999999999988765
No 101
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.81 E-value=6e-19 Score=185.55 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQ 111 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~ 111 (890)
+||+++|++|||||||+++|+++. ..+.++.+.++......... ....+++||++|++. .+...+ + +
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~~~--~~~~~~~~---~--- 71 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-EESTLVVIDHWEQEM--WTEDSCMQ---Y--- 71 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-EEEEEEEEeCCCcch--HHHhHHhh---c---
Confidence 489999999999999999998653 35556665454332222221 234799999999972 222222 2 1
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|||++++.+| +.+..|+..+.+.. ...++|+++|+||+|+..
T Consensus 72 ~ad~iilV~d~td~~S~-~~~~~~~~~l~~~~----------------------------~~~~~piilV~NK~Dl~~-- 120 (221)
T cd04148 72 QGDAFVVVYSVTDRSSF-ERASELRIQLRRNR----------------------------QLEDRPIILVGNKSDLAR-- 120 (221)
T ss_pred CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEEEChhccc--
Confidence 39999999999999998 77888888765531 113689999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+.+..++.++++..+++.+++|||+++.|++++++.|...+.
T Consensus 121 ---~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 121 ---SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ---cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 4555566778889889999999999999999999999988763
No 102
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=1e-17 Score=195.08 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhh---hccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLF---SSFS 107 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~---r~~~ 107 (890)
..+|+|||.+|||||||+|+|+++. ....++++.+..+..... .+..+.+|||||.+.. ..+...+ ....
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW---NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE---CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4689999999999999999999853 234566665543322221 2236899999997631 1111111 0111
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
++ ++|++|+|+|+++..++ ....|.+.++. .++|+++|+||+|+
T Consensus 115 ~~--~aD~il~VvD~~~~~s~--~~~~i~~~l~~--------------------------------~~~piilV~NK~Dl 158 (472)
T PRK03003 115 MR--TADAVLFVVDATVGATA--TDEAVARVLRR--------------------------------SGKPVILAANKVDD 158 (472)
T ss_pred HH--hCCEEEEEEECCCCCCH--HHHHHHHHHHH--------------------------------cCCCEEEEEECccC
Confidence 22 59999999999998775 23344443321 25899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
... . ......++..++. .++|||++|.|++++++.|...+
T Consensus 159 ~~~-----~---~~~~~~~~~g~~~-~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 159 ERG-----E---ADAAALWSLGLGE-PHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred Ccc-----c---hhhHHHHhcCCCC-eEEEEcCCCCCcHHHHHHHHhhc
Confidence 521 0 1111222333333 57999999999999999987765
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.80 E-value=7.5e-19 Score=176.06 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=114.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
||+++|++|||||||+++|++... .+.||++.++. .... .+..+++||+||+.++..++..+ ++ ++|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~---~~~~i~l~Dt~G~~~~~~~~~~~----~~--~ad~ 69 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY---KNLKFTIWDVGGKHKLRPLWKHY----YL--NTQA 69 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE---CCEEEEEEECCCChhcchHHHHH----hc--cCCE
Confidence 589999999999999999998633 56788876642 2222 23489999999998888777766 22 5999
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+|+|+|++++.++ +.+..|+..+.+.. ...+.|++||+||+|+..
T Consensus 70 ii~V~D~s~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~------ 114 (169)
T cd04158 70 VVFVVDSSHRDRV-SEAHSELAKLLTEK----------------------------ELRDALLLIFANKQDVAG------ 114 (169)
T ss_pred EEEEEeCCcHHHH-HHHHHHHHHHhcCh----------------------------hhCCCCEEEEEeCcCccc------
Confidence 9999999999998 66777766553211 112479999999999842
Q ss_pred hhhhHHHHHHHHHHcC------CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 196 KRIAVQCLRYLAHVNG------ASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 196 r~~i~~~lr~la~~~G------a~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
....+++++++...+ ..+++|||++|.|++++++.|.+.+.+
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 115 -ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred -CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 223344555543221 268899999999999999999887643
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.80 E-value=1.5e-18 Score=167.72 Aligned_cols=156 Identities=19% Similarity=0.327 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|.+|||||||+++|++... .+.+|++.++........ .....+.+||+||+..+..+...+ ++ ++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~----~~--~~ 73 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQERFRSITPSY----YR--GA 73 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChHHHHHHHHHH----hc--CC
Confidence 4799999999999999999998643 345777776543222221 122378999999998888777766 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|+|+++++++ +.+..|+..+..... .++|+++|+||+|+..
T Consensus 74 d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~-----------------------------~~~p~ivv~nK~D~~~---- 119 (159)
T cd00154 74 HGAILVYDITNRESF-ENLDKWLKELKEYAP-----------------------------ENIPIILVGNKIDLED---- 119 (159)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCcEEEEEEcccccc----
Confidence 999999999998887 788888876655321 2589999999999851
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
......+++++++..++++++++||+++.|++++++.|.
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 120 -QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred -cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 344456778888888999999999999999999988774
No 105
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.80 E-value=1.1e-18 Score=174.41 Aligned_cols=162 Identities=19% Similarity=0.274 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+|+|++|||||||+++|.++. ..+.||++..|. ...........+.+|||+|++.+..+...+ +. ++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV--ADIEVDGKQVELALWDTAGQEDYDRLRPLS----YP--DT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE--EEEEECCEEEEEEEEeCCCchhhhhccccc----cC--CC
Confidence 589999999999999999999864 456777775542 222111222378999999998876665444 22 58
Q ss_pred cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
|++++|||++++++| +++ ..|...++... .++|+++|+||+|+.....
T Consensus 74 d~~i~v~~~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~~~~ 122 (175)
T cd01870 74 DVILMCFSIDSPDSL-ENIPEKWTPEVKHFC------------------------------PNVPIILVGNKKDLRNDEH 122 (175)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEeeChhcccChh
Confidence 999999999999998 555 45877654421 1589999999999853211
Q ss_pred c-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 P-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
. ..+.+.....+++++.++. .+++|||++|.|++++++.|...+
T Consensus 123 ~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 123 TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 0 1123445678888988875 799999999999999999887653
No 106
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=2.3e-18 Score=170.92 Aligned_cols=161 Identities=20% Similarity=0.232 Sum_probs=122.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
...+|+++|++|||||||+++|+++. ..+.++++.++........ .....+++||++|+..+......+ ++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~----~~-- 78 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-GEKIKLQIWDTAGQERFRSITQSY----YR-- 78 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHH----hc--
Confidence 46899999999999999999999753 3455777766543222211 112378999999998887776666 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++++|||++++.++ +.+..|+..+..... .++|+++|+||+|+..
T Consensus 79 ~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~-----------------------------~~~~~i~v~NK~D~~~-- 126 (169)
T cd04114 79 SANALILTYDITCEESF-RCLPEWLREIEQYAN-----------------------------NKVITILVGNKIDLAE-- 126 (169)
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECccccc--
Confidence 59999999999999988 788889887655322 2589999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.++......+.++......++++||++|.|++++++.|...+
T Consensus 127 ---~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 127 ---RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred ---ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 444445566777777788999999999999999999887653
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.80 E-value=1.1e-18 Score=176.38 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=111.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
..+||+++|++|||||||+++|..+ ...+.||++.++. .... ....+++||++|++++..++..+ ++ +
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~l~l~D~~G~~~~~~~~~~~----~~--~ 80 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE--TVTY---KNISFTVWDVGGQDKIRPLWRHY----YT--N 80 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE--EEEE---CCEEEEEEECCCChhhHHHHHHH----hC--C
Confidence 4689999999999999999999754 3466788887653 2222 23489999999999998888877 23 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++|+|+|++++.++ +....|+..+.... ...++|++||+||+|+.+..+
T Consensus 81 ad~ii~v~D~t~~~s~-~~~~~~l~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~~~ 131 (175)
T smart00177 81 TQGLIFVVDSNDRDRI-DEAREELHRMLNED----------------------------ELRDAVILVFANKQDLPDAMK 131 (175)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHhhCH----------------------------hhcCCcEEEEEeCcCcccCCC
Confidence 9999999999999887 55555555432210 012589999999999853111
Q ss_pred cchhhhhHHHHHHHH-----HHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLA-----HVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~lr~la-----~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..++.... ....+.+++|||++|.|++++.++|...+
T Consensus 132 -------~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 132 -------AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred -------HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 11111111 11234577899999999999999887654
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=1.8e-18 Score=176.07 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=115.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
.+||+++|++|||||||+++|+.+.. .+.||+|.++..............+++|||+|++++..++..+ ++ ++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~----~~--~~ 76 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSY----TR--CT 76 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHH----hc--cC
Confidence 57999999999999999999988532 3457777654322222112233489999999999888888777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|+|++++.++ +.+..|+..+.+... ..++|++||+||+|+....
T Consensus 77 d~ii~v~D~~~~~~~-~~~~~~~~~i~~~~~----------------------------~~~~p~iiv~NK~D~~~~~-- 125 (183)
T cd04152 77 DGIVFVVDSVDVERM-EEAKTELHKITRFSE----------------------------NQGVPVLVLANKQDLPNAL-- 125 (183)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHhhhh----------------------------cCCCcEEEEEECcCccccC--
Confidence 999999999999887 666777765554321 1368999999999985311
Q ss_pred chhhhhHHHHHHHHH------HcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 194 NKKRIAVQCLRYLAH------VNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 194 e~r~~i~~~lr~la~------~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
...++..++. ..++.+++|||+++.|++++.+.|...+.
T Consensus 126 -----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 126 -----SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred -----CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 1122333322 12356899999999999999999887764
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.79 E-value=1.7e-18 Score=172.07 Aligned_cols=152 Identities=15% Similarity=0.176 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
+||+++|++|||||||+++|..+ ...+.||++.++. .... ....+++||++|+.++..++..+ ++ ++|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~----~~--~ad 69 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHY----FQ--NTQ 69 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--CCC
Confidence 48999999999999999999764 3356788886542 2222 24589999999999988888777 23 699
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++|+|||++++.++ +.+..|+..+.... ....+|++||+||+|+.+...
T Consensus 70 ~~i~v~D~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~~~-- 118 (159)
T cd04150 70 GLIFVVDSNDRERI-GEAREELQRMLNED----------------------------ELRDAVLLVFANKQDLPNAMS-- 118 (159)
T ss_pred EEEEEEeCCCHHHH-HHHHHHHHHHHhcH----------------------------HhcCCCEEEEEECCCCCCCCC--
Confidence 99999999999887 55555554332110 012479999999999842111
Q ss_pred hhhhhHHHHHHHHH----HcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 195 KKRIAVQCLRYLAH----VNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 195 ~r~~i~~~lr~la~----~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
..+....++. ..++.+++|||++|.|++++++.|.
T Consensus 119 ----~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 119 ----AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred ----HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1111222221 2244678999999999999988774
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.79 E-value=3.3e-18 Score=177.98 Aligned_cols=182 Identities=16% Similarity=0.209 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEec----cccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGK----TVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~----~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
+||+++|+++||||||+++|+++. ..+.+|+|.++........ ......++|||++|++++..+...+ |+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~----yr 76 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF----YN 76 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH----hC
Confidence 489999999999999999999864 4677899877644333211 1122389999999999999988888 33
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++|+|||+++++|| +++..|++.+.+....... ......++ +........+|++|||||+|+.+
T Consensus 77 --~ad~iIlVyDvtn~~Sf-~~l~~W~~ei~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 77 --QVNGIILVHDLTNRKSS-QNLQRWSLEALNKDTFPTG---------LLVTNGDY-DSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred --cCCEEEEEEECcChHHH-HHHHHHHHHHHHhhccccc---------cccccccc-cccccCCCCceEEEEEECccchh
Confidence 59999999999999999 9999999988764321000 00000000 00011234699999999999853
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCC-------CHHHHHHHHHHH
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPG-------LVKRTRDILNHY 235 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~-------nId~Lk~~I~~~ 235 (890)
.- ..+..........+|++.|++.++.+++++. +-..|...+...
T Consensus 144 ~r-~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~ 195 (202)
T cd04102 144 EK-ESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKV 195 (202)
T ss_pred hc-ccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHH
Confidence 10 0011122234567899999999999987543 445555555444
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.79 E-value=1.8e-18 Score=173.66 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=111.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+.+|+++|++|||||||+++|+++.. .+.+|++..+ ..... ....+++||+||++.+..+...+ ++ +
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~---~~~~l~l~D~~G~~~~~~~~~~~----~~--~ 81 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEY---EGYKLNIWDVGGQKTLRPYWRNY----FE--S 81 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEE---CCEEEEEEECCCCHHHHHHHHHH----hC--C
Confidence 468999999999999999999998633 4567777432 22221 13479999999999888777666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|+|++++.++ +.+..|+..+.... ...++|++||+||+|+.+.
T Consensus 82 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~p~iiv~nK~Dl~~~-- 130 (173)
T cd04154 82 TDALIWVVDSSDRLRL-DDCKRELKELLQEE----------------------------RLAGATLLILANKQDLPGA-- 130 (173)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHhCh----------------------------hhcCCCEEEEEECcccccC--
Confidence 9999999999999887 66666665443211 1126899999999998531
Q ss_pred cchhhhhHHHHHHHHH-----HcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAH-----VNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~-----~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
. ..+++..+.. ..++++++|||++|.|++++++++.
T Consensus 131 ---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 131 ---L--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ---C--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 1 2233444332 3467899999999999999988764
No 112
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.79 E-value=3.2e-19 Score=177.90 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhhhcc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLFSSF 106 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~r~~ 106 (890)
++|+++|+||||||||+|+|++.. .++ |+++++........ ....+.++|+||.+++. .+...+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~-pG~Tv~~~~g~~~~---~~~~~~lvDlPG~ysl~~~s~ee~v~~~~--- 73 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNW-PGTTVEKKEGIFKL---GDQQVELVDLPGIYSLSSKSEEERVARDY--- 73 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEES-TTSSSEEEEEEEEE---TTEEEEEEE----SSSSSSSHHHHHHHHH---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCC-CCCCeeeeeEEEEe---cCceEEEEECCCcccCCCCCcHHHHHHHH---
Confidence 479999999999999999999963 455 88888854333332 22479999999988763 233333
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
+...++|++|.|+|.++.++ ++....+ + ..+++|+++|.||+|
T Consensus 74 -l~~~~~D~ii~VvDa~~l~r---~l~l~~q-l--------------------------------~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 74 -LLSEKPDLIIVVVDATNLER---NLYLTLQ-L--------------------------------LELGIPVVVVLNKMD 116 (156)
T ss_dssp -HHHTSSSEEEEEEEGGGHHH---HHHHHHH-H--------------------------------HHTTSSEEEEEETHH
T ss_pred -HhhcCCCEEEEECCCCCHHH---HHHHHHH-H--------------------------------HHcCCCEEEEEeCHH
Confidence 10114999999999998654 4433222 1 124799999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDIL 232 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I 232 (890)
+. .++.+..+.+.+++.+|++++++||+++.|+++|++.|
T Consensus 117 ~a------~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 117 EA------ERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HH------HHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HH------HHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 96 56677778899999999999999999999999998875
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=2.6e-18 Score=167.68 Aligned_cols=157 Identities=17% Similarity=0.297 Sum_probs=118.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
||+++|++|||||||+++|++.. ..+.++.+ ++ +............+++||+||+..+..+...+ ++ +++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~--~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DS-YRKTIVVDGETYTLDILDTAGQEEFSAMRDLY----IR--QGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-He-EEEEEEECCEEEEEEEEECCChHHHHHHHHHH----Hh--cCC
Confidence 68999999999999999999853 45556655 32 21212111122479999999998877777666 22 489
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++++|||+++++++ +.+..|...+..... ..++|+++|+||+|+..
T Consensus 73 ~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~ivv~nK~D~~~----- 118 (160)
T cd00876 73 GFILVYSITDRESF-EEIKGYREQILRVKD----------------------------DEDIPIVLVGNKCDLEN----- 118 (160)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEECCcccc-----
Confidence 99999999999987 777777765554321 13689999999999863
Q ss_pred hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.+....+.++.++..++++++++|++++.|++++.+.|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 119 ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 34455677888899999999999999999999999888764
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.79 E-value=2.5e-18 Score=170.45 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+||+++|.+|||||||+++|++.. ..+.+++...+. ...........+++||+||++.+..+...+ ++ .+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~----~~--~~ 72 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS--ATVTVDGKQVNLGLWDTAGQEEYDRLRPLS----YP--NT 72 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE--EEEEECCEEEEEEEEeCCCcccccccchhh----cC--CC
Confidence 489999999999999999999865 344455553332 222222223489999999998775555544 22 49
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++++|||++++.++......|+..+.... .++|+++|+||+|+......
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~p~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 73 DVFLICFSVDSPSSFENVKTKWIPEIRHYC------------------------------PNVPIILVGTKIDLRDDENT 122 (171)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC------------------------------CCCCEEEEEccHHhhhchhh
Confidence 999999999999998555566776554421 15899999999998632111
Q ss_pred c------hhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHH
Q psy11649 194 N------KKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 194 e------~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~ 234 (890)
. ...+..+...+++..+++ .++++||+++.|++++++.|..
T Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 123 LKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 0 012345677888888888 8999999999999999887754
No 115
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=2.7e-18 Score=174.88 Aligned_cols=152 Identities=15% Similarity=0.203 Sum_probs=109.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
++||+++|++|||||||+++|+.+. ..+.||++.++. .... ....+++||+||++++..++..+ ++ ++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~---~~~~~~i~D~~Gq~~~~~~~~~~----~~--~a 85 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHY----FQ--NT 85 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--cC
Confidence 5799999999999999999998643 356788886642 2222 23489999999999998888887 33 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|+|++++.++ +.+..|+..+. .. ....++|++|||||+|+....
T Consensus 86 ~~iI~V~D~s~~~s~-~~~~~~l~~~l---~~-------------------------~~~~~~piilv~NK~Dl~~~~-- 134 (181)
T PLN00223 86 QGLIFVVDSNDRDRV-VEARDELHRML---NE-------------------------DELRDAVLLVFANKQDLPNAM-- 134 (181)
T ss_pred CEEEEEEeCCcHHHH-HHHHHHHHHHh---cC-------------------------HhhCCCCEEEEEECCCCCCCC--
Confidence 999999999999887 44444443221 11 011258999999999985211
Q ss_pred chhhhhHHHHHHHHHHcCC--------eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGA--------SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga--------~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
. ...++..+|+ .+++|||++|+|+++++++|.+.+
T Consensus 135 -----~---~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 135 -----N---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred -----C---HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 1 1223333332 356899999999999999998775
No 116
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.78 E-value=3.6e-18 Score=174.20 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
.||+|+|++|||||||+++|..+. ..+.++++..|. ...........+.+||++|+..+......+ +. ++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~----~~--~a 73 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV--TDCRVDGKPVQLALWDTAGQEEYERLRPLS----YS--KA 73 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE--EEEEECCEEEEEEEEECCCChhccccchhh----cC--CC
Confidence 489999999999999999998643 345566654432 221111122378999999998776544333 22 58
Q ss_pred cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+++++|||+++++++ +.+. .|++.++.... .+|+++||||+|+..+..
T Consensus 74 ~~~llv~~i~~~~s~-~~~~~~~~~~i~~~~~------------------------------~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 74 HVILIGFAVDTPDSL-ENVRTKWIEEVRRYCP------------------------------NVPVILVGLKKDLRQDAV 122 (187)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------------------CCCEEEEeeChhhhhCcc
Confidence 999999999999998 6665 68887764321 489999999999853211
Q ss_pred c-----chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 193 P-----NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 193 ~-----e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
. ..+.+..+....+++.+|+ .+++|||++|.|++++++.+...+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 123 AKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred cccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 1 1344445678889999985 79999999999999999999877643
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=3.5e-18 Score=167.93 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
+|+++|++|||||||+++|++.. ..+.||++..+. ... ..+..+++||+||++++..++..+ ++ ++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~---~~~~~~~l~Dt~G~~~~~~~~~~~----~~--~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE---KGNLSFTAFDMSGQGKYRGLWEHY----YK--NI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE---ECCEEEEEEECCCCHhhHHHHHHH----Hc--cC
Confidence 48999999999999999999853 356688875432 221 123479999999999988888777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|+|.+++.++ ..+..|+..+.+.. . ....++|+++|+||+|+.....
T Consensus 70 d~ii~v~D~~~~~~~-~~~~~~~~~~~~~~-~-------------------------~~~~~~p~iiv~NK~Dl~~~~~- 121 (162)
T cd04157 70 QGIIFVIDSSDRLRL-VVVKDELELLLNHP-D-------------------------IKHRRVPILFFANKMDLPDALT- 121 (162)
T ss_pred CEEEEEEeCCcHHHH-HHHHHHHHHHHcCc-c-------------------------cccCCCCEEEEEeCccccCCCC-
Confidence 999999999999887 66666766543210 0 1123699999999999853111
Q ss_pred chhhhhHHHHHHHHH--HcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAH--VNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 194 e~r~~i~~~lr~la~--~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.... .....++. .....+++|||++|.|+++++++|.+
T Consensus 122 --~~~~-~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 122 --AVKI-TQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred --HHHH-HHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 0000 11111111 12345899999999999999988753
No 118
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=6.3e-18 Score=172.27 Aligned_cols=156 Identities=14% Similarity=0.174 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
.+||+++|++|||||||++++..+ ...+.||++.++. .... .+..+++||++|++++..++..+ ++ ++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~----~~--~a 85 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY---KNLKFTMWDVGGQDKLRPLWRHY----YQ--NT 85 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--CC
Confidence 579999999999999999999764 3345688886642 3222 23479999999999988888877 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|+|++++.++ +.+..++..+.. . .....+|++||+||.|+.+..+
T Consensus 86 d~iI~v~D~t~~~s~-~~~~~~l~~~~~---~-------------------------~~~~~~piilv~NK~Dl~~~~~- 135 (182)
T PTZ00133 86 NGLIFVVDSNDRERI-GDAREELERMLS---E-------------------------DELRDAVLLVFANKQDLPNAMS- 135 (182)
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHHHHHh---C-------------------------HhhcCCCEEEEEeCCCCCCCCC-
Confidence 999999999999887 555444433211 1 0012479999999999842111
Q ss_pred chhhhhHHHHHHHH----HHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLA----HVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la----~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.. +....+. ....+.+++|||++|.|++++++.|...+
T Consensus 136 --~~---~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 136 --TT---EVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred --HH---HHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 11 1111111 11223567899999999999999998765
No 119
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.77 E-value=1.2e-17 Score=168.03 Aligned_cols=161 Identities=19% Similarity=0.264 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
.||+|+|++|||||||+++|++.. ..+.|+++..+. ...........+++||+||+.++..+...+ +. ++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~--~~ 73 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS--KIIRYKGQDYHLEIVDTAGQDEYSILPQKY----SI--GI 73 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE--EEEEECCEEEEEEEEECCChHhhHHHHHHH----Hh--hC
Confidence 689999999999999999999864 345677765442 222111122378999999998877766666 11 48
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|||+++..++ +.+..|++.+.+.. ...++|+++|+||+|+..
T Consensus 74 ~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~p~ilv~NK~Dl~~---- 120 (180)
T cd04137 74 HGYILVYSVTSRKSF-EVVKVIYDKILDML----------------------------GKESVPIVLVGNKSDLHT---- 120 (180)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEEEchhhhh----
Confidence 999999999999988 77777776554421 123589999999999842
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.....+.+.++..++++++++||+++.|++++.+.+...+..
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 121 -QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred -cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 23344456778888889999999999999999999999887643
No 120
>KOG1673|consensus
Probab=99.77 E-value=1.7e-18 Score=168.11 Aligned_cols=176 Identities=22% Similarity=0.378 Sum_probs=146.9
Q ss_pred ccCCccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649 29 IDIQSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSF 106 (890)
Q Consensus 29 ~~~~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~ 106 (890)
+.+..-+.||-++|++.+|||||+-++.++ ++.+..+.|+.+.-.+.. ....+..+.|||++|++++..+++..
T Consensus 14 a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~-i~~t~IsfSIwdlgG~~~~~n~lPia--- 89 (205)
T KOG1673|consen 14 AVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVS-IRGTDISFSIWDLGGQREFINMLPIA--- 89 (205)
T ss_pred ccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEE-ecceEEEEEEEecCCcHhhhccCcee---
Confidence 344566799999999999999999999986 356667888876433322 22223379999999999998888888
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
+.++-+++++||++.+.++ +++..|+++.+...+ .-+| |+||+|+|
T Consensus 90 ---c~dsvaIlFmFDLt~r~TL-nSi~~WY~QAr~~Nk-----------------------------tAiP-ilvGTKyD 135 (205)
T KOG1673|consen 90 ---CKDSVAILFMFDLTRRSTL-NSIKEWYRQARGLNK-----------------------------TAIP-ILVGTKYD 135 (205)
T ss_pred ---ecCcEEEEEEEecCchHHH-HHHHHHHHHHhccCC-----------------------------ccce-EEeccchH
Confidence 5568999999999999998 999999997776433 2577 56799999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcc
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLA 242 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~ 242 (890)
++-+++++.+..+...+|++|+..++++++||+..+.|+++++..+...+|..+.+
T Consensus 136 ~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~~t 191 (205)
T KOG1673|consen 136 LFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLPWT 191 (205)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCcee
Confidence 99999999999999999999999999999999999999999999999999876653
No 121
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=1e-17 Score=172.64 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
||+++|++|||||||+++|+++.. .+.+++. ++.... .........+++||++|++.+..+...+ +. ++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~-~~~~~~~~~l~i~D~~G~~~~~~~~~~~----~~--~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKE-YEVGGVSLTLDILDTSGSYSFPAMRKLS----IQ--NSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEE-EEECCEEEEEEEEECCCchhhhHHHHHH----hh--cCC
Confidence 689999999999999999998643 3445554 322111 1111122479999999999888877666 22 599
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++|+|||++++.++ +.+..|+..+.+... ..++|++||+||+|+...
T Consensus 73 ~vilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~NK~Dl~~~---- 119 (198)
T cd04147 73 AFALVYAVDDPESF-EEVERLREEILEVKE----------------------------DKFVPIVVVGNKADSLEE---- 119 (198)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEEccccccc----
Confidence 99999999999998 778888877665422 136899999999998531
Q ss_pred hhhhhHHHHHHHH-HHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 195 KKRIAVQCLRYLA-HVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 195 ~r~~i~~~lr~la-~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+........+.+ ..+++.++++||++|.|++++++.|...+
T Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 120 ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 2222233333333 35578899999999999999999998876
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=3.4e-18 Score=168.16 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
+|+++|++|||||||+++|+++.. ...||++.++. ... ......+++||++|+..+..+...+ +. ++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~l~i~D~~G~~~~~~~~~~~----~~--~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQ--LEKHLSLTVWDVGGQEKMRTVWKCY----LE--NTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEE--eCCceEEEEEECCCCHhHHHHHHHH----hc--cCCE
Confidence 589999999999999999998643 34577775432 222 1223489999999998887777665 22 5999
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+|+|+|.+++.++ ..+..|+..+.+.. ...++|+++|+||+|+.....
T Consensus 71 iv~v~D~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~nK~Dl~~~~~--- 118 (160)
T cd04156 71 LVYVVDSSDEARL-DESQKELKHILKNE----------------------------HIKGVPVVLLANKQDLPGALT--- 118 (160)
T ss_pred EEEEEECCcHHHH-HHHHHHHHHHHhch----------------------------hhcCCCEEEEEECcccccCcC---
Confidence 9999999999887 56666655443211 012689999999999852111
Q ss_pred hhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 196 KRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 196 r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
...+... +..++...++.+++|||++|.|++++++.|..
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 1111111 12333334567999999999999999888753
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.77 E-value=1.5e-17 Score=173.26 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=124.1
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+++|++|||||||+++++.+. ..+.+|++.++....... ......+++||++|+.++..+...+ ++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~~~~~~~~~~----~~ 80 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQEKFGGLRDGY----YI 80 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHH----hc
Confidence 4557899999999999999999887653 567889987764322221 2223489999999998888777666 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++|+|||+++..++ ..+..|+..+.+..+ .+|+++||||+|+.+
T Consensus 81 --~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------------------~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 81 --KGQCAIIMFDVTSRITY-KNVPNWHRDIVRVCE------------------------------NIPIVLVGNKVDVKD 127 (215)
T ss_pred --cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC------------------------------CCCEEEEEECccCcc
Confidence 48999999999999998 888889887765321 489999999999842
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+.... ....++...++.++++||+++.|+++.+..|...+.
T Consensus 128 ------~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 128 ------RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred ------ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 22222 223567778899999999999999999998888774
No 124
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=2.4e-18 Score=172.10 Aligned_cols=149 Identities=20% Similarity=0.213 Sum_probs=110.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
|+++|++|||||||+++|+++ ...+.||++.++ .... ..+.++++||++|+..+..+...+ ++ ++|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~---~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ad~ 70 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIP---TQDAIMELLEIGGSQNLRKYWKRY----LS--GSQG 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEe---eCCeEEEEEECCCCcchhHHHHHH----Hh--hCCE
Confidence 899999999999999999986 346678888653 2222 223489999999999988888777 22 5999
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+|+|+|.+++.++ ..+..|+..+... ..++|+++|+||+|+.. .
T Consensus 71 ii~V~D~t~~~s~-~~~~~~l~~~~~~------------------------------~~~~piilv~NK~Dl~~-----~ 114 (164)
T cd04162 71 LIFVVDSADSERL-PLARQELHQLLQH------------------------------PPDLPLVVLANKQDLPA-----A 114 (164)
T ss_pred EEEEEECCCHHHH-HHHHHHHHHHHhC------------------------------CCCCcEEEEEeCcCCcC-----C
Confidence 9999999999887 6666666544221 12689999999999853 2
Q ss_pred hhhh----HHHHHHHHHHcCCeEEEEeccC------CCCHHHHHHHHH
Q psy11649 196 KRIA----VQCLRYLAHVNGASLLFHSSLD------PGLVKRTRDILN 233 (890)
Q Consensus 196 r~~i----~~~lr~la~~~Ga~l~etSAK~------~~nId~Lk~~I~ 233 (890)
+... ...+..++.+.++.+++|||++ ++|++++++.+.
T Consensus 115 ~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 115 RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 2111 1235667777889999999999 788888766553
No 125
>KOG0395|consensus
Probab=99.76 E-value=6.1e-18 Score=175.18 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=131.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+||+++|.+|||||+|+.+|.+. .+.|.||+...|. +..........+.|+||+|+..+..+...+ ++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~--k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~----~~-- 73 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYR--KELTVDGEVCMLEILDTAGQEEFSAMRDLY----IR-- 73 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccce--EEEEECCEEEEEEEEcCCCcccChHHHHHh----hc--
Confidence 3689999999999999999999986 4578899885543 222222333489999999999999998888 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+.+++++||++++..|| +.+..+.+.|.+.... ..+|+++||||+|+.
T Consensus 74 ~~~gF~lVysitd~~SF-~~~~~l~~~I~r~~~~----------------------------~~~PivlVGNK~Dl~--- 121 (196)
T KOG0395|consen 74 NGDGFLLVYSITDRSSF-EEAKQLREQILRVKGR----------------------------DDVPIILVGNKCDLE--- 121 (196)
T ss_pred cCcEEEEEEECCCHHHH-HHHHHHHHHHHHhhCc----------------------------CCCCEEEEEEcccch---
Confidence 58999999999999999 7777777776332211 248999999999995
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..|.+..++.+.++..++|+|+||||+.+.|+++++..+.+.+
T Consensus 122 --~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 122 --RERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred --hccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999988887765
No 126
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=1.7e-16 Score=182.13 Aligned_cols=147 Identities=19% Similarity=0.142 Sum_probs=97.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch--------hhHHhhhhc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--------LEVASLFSS 105 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--------~~Li~~~r~ 105 (890)
+|+++|.+|||||||+|+|+++.. ...++++.+..+..... .+..+.+|||||.... ......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~-- 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW---GGREFILIDTGGIEEDDDGLDKQIREQAEIA-- 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE---CCeEEEEEECCCCCCcchhHHHHHHHHHHHH--
Confidence 589999999999999999998642 23356665544333222 2237999999996432 1112222
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
++ .+|++++|+|.++..+. .-..+.+.+++ .+.|+++|+||+
T Consensus 76 --~~--~ad~vl~vvD~~~~~~~--~d~~i~~~l~~--------------------------------~~~piilVvNK~ 117 (429)
T TIGR03594 76 --IE--EADVILFVVDGREGLTP--EDEEIAKWLRK--------------------------------SGKPVILVANKI 117 (429)
T ss_pred --Hh--hCCEEEEEEeCCCCCCH--HHHHHHHHHHH--------------------------------hCCCEEEEEECc
Confidence 22 59999999999886553 22222222222 257999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+.. ... . ... ...+|+ .++++||++|.|++++.+.+...+
T Consensus 118 D~~~-----~~~-~---~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 118 DGKK-----EDA-V---AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred cCCc-----ccc-c---HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 9852 111 1 111 245676 699999999999999999887765
No 127
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.76 E-value=4.2e-18 Score=164.90 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCc-----chhhHHhhhhccccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT-----SRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~-----~~~~Li~~~r~~~~~~~ 111 (890)
||+++|++|||||||+++|++....+.+|++++|. -.+|||||++ .+..+... ++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~~~t~~~~~~-------------~~~iDt~G~~~~~~~~~~~~~~~-----~~-- 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILYKKTQAVEYN-------------DGAIDTPGEYVENRRLYSALIVT-----AA-- 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccccccceeEEEc-------------CeeecCchhhhhhHHHHHHHHHH-----hh--
Confidence 89999999999999999999977667777766642 1689999984 22222222 23
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|||++++.++++ ..|.+. .+.|+++|+||+|+.+
T Consensus 62 ~ad~vilv~d~~~~~s~~~--~~~~~~-----------------------------------~~~p~ilv~NK~Dl~~-- 102 (142)
T TIGR02528 62 DADVIALVQSATDPESRFP--PGFASI-----------------------------------FVKPVIGLVTKIDLAE-- 102 (142)
T ss_pred cCCEEEEEecCCCCCcCCC--hhHHHh-----------------------------------ccCCeEEEEEeeccCC--
Confidence 5999999999999998732 234321 0249999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~ 233 (890)
+....+.+++++..++. +++++||+++.|++++++.|.
T Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 103 ----ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ----cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 22234556777777776 799999999999999988763
No 128
>PLN00023 GTP-binding protein; Provisional
Probab=99.76 E-value=1e-17 Score=184.02 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=114.4
Q ss_pred ccCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEecc------------ccceEEEEEEcCCCc
Q psy11649 29 IDIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKT------------VMKDICHLWELGSGT 94 (890)
Q Consensus 29 ~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~------------~~k~~l~IwDlpG~~ 94 (890)
.......+||+|+|+.|||||||+++|+++. ..+.+|+|.++......... .....++||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 4557788999999999999999999999864 46778999886433333110 122479999999999
Q ss_pred chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc-ccccC
Q psy11649 95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK-GLIRT 173 (890)
Q Consensus 95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~-~li~~ 173 (890)
+|..+...+ ++ +++++|+|||+++.++| +++..|++.+.+...... |.. .--..
T Consensus 95 rfrsL~~~y----yr--~AdgiILVyDITdr~SF-enL~kWl~eI~~~~~~s~------------------p~~s~~~~~ 149 (334)
T PLN00023 95 RYKDCRSLF----YS--QINGVIFVHDLSQRRTK-TSLQKWASEVAATGTFSA------------------PLGSGGPGG 149 (334)
T ss_pred hhhhhhHHh----cc--CCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhccccc------------------ccccccccC
Confidence 999999888 33 59999999999999998 999999998876432100 000 00001
Q ss_pred CCCcEEEEeecccCCCCCCcchhh---hhHHHHHHHHHHcCC
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKR---IAVQCLRYLAHVNGA 212 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~---~i~~~lr~la~~~Ga 212 (890)
.++|++|||||+|+.... ..|. +..++++++|+++|+
T Consensus 150 ~~ipIILVGNK~DL~~~~--~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 150 LPVPYIVIGNKADIAPKE--GTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred CCCcEEEEEECccccccc--cccccccccHHHHHHHHHHcCC
Confidence 258999999999985210 0122 357899999999875
No 129
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=2.3e-17 Score=164.48 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
.||+++|++|||||||+++|+++.. ...++...++. ...........+++||++|.+.+...+..+ +. +++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ad 72 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEIT--IPADVTPERVPTTIVDTSSRPQDRANLAAE----IR--KAN 72 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceE--eeeeecCCeEEEEEEeCCCchhhhHHHhhh----cc--cCC
Confidence 3899999999999999999998643 11233322221 111111223489999999998766555444 22 599
Q ss_pred EEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 115 TLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
++++|||++++.++ +.+ ..|...+++.. .++|+++|+||+|+.....
T Consensus 73 ~~ilv~d~~~~~s~-~~~~~~~~~~i~~~~------------------------------~~~pviiv~nK~Dl~~~~~- 120 (166)
T cd01893 73 VICLVYSVDRPSTL-ERIRTKWLPLIRRLG------------------------------VKVPIILVGNKSDLRDGSS- 120 (166)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEEchhcccccc-
Confidence 99999999999998 665 46877665421 1589999999999953211
Q ss_pred chhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.....+.+..++..++ ..+++|||+++.|++++++.+...+
T Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 121 --QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred --hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 1112333444444443 3799999999999999999887765
No 130
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.76 E-value=6.6e-18 Score=167.27 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN--------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~--------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
+|+|+|++|||||||+++|++.. ..+.+|++.++. .... .+..+.+||+||+..+..+...+ +
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV---GNARLKFWDLGGQESLRSLWDKY----Y 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE---CCEEEEEEECCCChhhHHHHHHH----h
Confidence 48999999999999999998631 244567776643 2221 23489999999998888777666 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
. +++++++|+|.++++++ +....|+..+.+.. ...++|+++|+||+|+.
T Consensus 72 ~--~~~~~v~vvd~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 72 A--ECHAIIYVIDSTDRERF-EESKSALEKVLRNE----------------------------ALEGVPLLILANKQDLP 120 (167)
T ss_pred C--CCCEEEEEEECchHHHH-HHHHHHHHHHHhCh----------------------------hhcCCCEEEEEEccccc
Confidence 2 59999999999998876 55566665443211 11268999999999985
Q ss_pred CCCCcchhhhhHHHHHHHH---HHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 189 ENLEPNKKRIAVQCLRYLA---HVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la---~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.... ...+...+.... ...+++++++||++|.|++++.++|..
T Consensus 121 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 121 DALS---VEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cCCC---HHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 3211 111111111111 113568999999999999999888753
No 131
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.75 E-value=1.3e-17 Score=168.14 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
.++|+++|++|||||||+++|+++. ..+.||++.++. .... .+..+.+||+||++++......+ ++ ++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~----~~--~~ 83 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVY---KNIRFLMWDIGGQESLRSSWNTY----YT--NT 83 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEE---CCeEEEEEECCCCHHHHHHHHHH----hh--cC
Confidence 5789999999999999999998753 345677776542 2221 23479999999999887777666 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|+|.++++++ .....|+..+.+.. ....+|++||+||+|+....+.
T Consensus 84 d~vi~V~D~s~~~~~-~~~~~~l~~~~~~~----------------------------~~~~~p~viv~NK~Dl~~~~~~ 134 (174)
T cd04153 84 DAVILVIDSTDRERL-PLTKEELYKMLAHE----------------------------DLRKAVLLVLANKQDLKGAMTP 134 (174)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHhch----------------------------hhcCCCEEEEEECCCCCCCCCH
Confidence 999999999999887 44444444332210 1125899999999998532111
Q ss_pred chhhhhHHHHHHHH----HHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLA----HVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 194 e~r~~i~~~lr~la----~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
. +..+.+. ...++.+++|||++|.|++++++.|..
T Consensus 135 ---~---~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 135 ---A---EISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ---H---HHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 1 1112222 234567999999999999999888753
No 132
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=1.4e-17 Score=164.24 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
||+|+|++|||||||+++|+.+. ..+.||++.++. .... .+..+++||+||+.++..+...+ ++ ++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~~~ 69 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY---KNLKFQVWDLGGQTSIRPYWRCY----YS--NTDA 69 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--CCCE
Confidence 58999999999999999997653 244577775532 2222 23479999999999888887776 22 5999
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+|+|+|++++.++ .....|+..+.+. ....++|+++|+||+|+.+... .
T Consensus 70 ii~v~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~piiiv~nK~Dl~~~~~--~ 118 (158)
T cd04151 70 IIYVVDSTDRDRL-GTAKEELHAMLEE----------------------------EELKGAVLLVFANKQDMPGALS--E 118 (158)
T ss_pred EEEEEECCCHHHH-HHHHHHHHHHHhc----------------------------hhhcCCcEEEEEeCCCCCCCCC--H
Confidence 9999999998776 3333333222110 0112589999999999853111 0
Q ss_pred hhhhHHHHH-HHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 196 KRIAVQCLR-YLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 196 r~~i~~~lr-~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.. +...+. ......+..+++|||+++.|++++++.|.+
T Consensus 119 ~~-i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AE-ISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HH-HHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 11 111110 011122356999999999999999888753
No 133
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=4.4e-16 Score=179.18 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-----HHhhhhccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-----VASLFSSFS 107 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-----Li~~~r~~~ 107 (890)
.+|+|+|.+|||||||+|+|++... ...++++.+..+...... +..+.+|||||...... +.... ...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~---~~~~~liDT~G~~~~~~~~~~~~~~~~-~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL---GREFILIDTGGIEPDDDGFEKQIREQA-ELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC---CcEEEEEECCCCCCcchhHHHHHHHHH-HHH
Confidence 4799999999999999999998532 223556555443333221 24799999999876111 11111 001
Q ss_pred cccccCcEEEEEEeCCCcCchH-HHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLW-TEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~-~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
+. ++|++|+|+|.++..+.. ..+..|+. + .++|+++|+||+|
T Consensus 78 ~~--~ad~il~vvd~~~~~~~~~~~~~~~l~---~--------------------------------~~~piilv~NK~D 120 (435)
T PRK00093 78 IE--EADVILFVVDGRAGLTPADEEIAKILR---K--------------------------------SNKPVILVVNKVD 120 (435)
T ss_pred HH--hCCEEEEEEECCCCCCHHHHHHHHHHH---H--------------------------------cCCcEEEEEECcc
Confidence 22 599999999999865531 12222322 1 1589999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~ 234 (890)
+.. .. .....+ ..+|+. ++++||++|.|++++.+.|..
T Consensus 121 ~~~------~~---~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 121 GPD------EE---ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred Ccc------ch---hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 742 11 112222 345664 899999999999999888876
No 134
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=7.7e-17 Score=158.42 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
||+++|.+|||||||+++++++. ..+.++++..+. .... .+..+.+||+||+..+..+...+ ++ ++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~----~~--~~~~ 69 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWKHY----YE--NTNG 69 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEE---CCEEEEEEECCCChhhHHHHHHH----hc--cCCE
Confidence 68999999999999999999864 345566665432 2221 23479999999999888777766 22 5899
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+++|||+++++++ ..+..|+..+.... ...+.|+++|+||+|+....+
T Consensus 70 ~i~v~D~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~piiiv~nK~D~~~~~~--- 117 (158)
T cd00878 70 IIFVVDSSDRERI-EEAKEELHKLLNEE----------------------------ELKGVPLLIFANKQDLPGALS--- 117 (158)
T ss_pred EEEEEECCCHHHH-HHHHHHHHHHHhCc----------------------------ccCCCcEEEEeeccCCccccC---
Confidence 9999999999887 55555555443311 123689999999999853111
Q ss_pred hhhhHHHHHHH-HHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 196 KRIAVQCLRYL-AHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 196 r~~i~~~lr~l-a~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
.....+.++.. +....++++++||++|.|++++++.|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 118 VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 11111111111 122356799999999999999977764
No 135
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=2e-15 Score=183.84 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhh---hccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLF---SSFS 107 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~---r~~~ 107 (890)
..+|+++|.+|||||||+|+|++... ...|+++.+..+.... ..+..+.+|||||.... ..+...+ ....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~---~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE---WAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE---ECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 36899999999999999999998532 3346666553322111 12237999999997631 1111111 0111
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
+. .+|++|+|+|.++.-.. .-..|.+.++. .++|+++|+||+|+
T Consensus 352 ~~--~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~--------------------------------~~~pvIlV~NK~D~ 395 (712)
T PRK09518 352 VS--LADAVVFVVDGQVGLTS--TDERIVRMLRR--------------------------------AGKPVVLAVNKIDD 395 (712)
T ss_pred HH--hCCEEEEEEECCCCCCH--HHHHHHHHHHh--------------------------------cCCCEEEEEECccc
Confidence 22 59999999999874332 22234443321 26899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.. .. ......+...++. .+++||++|.|++++++.|.+.+
T Consensus 396 ~~-----~~---~~~~~~~~lg~~~-~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 396 QA-----SE---YDAAEFWKLGLGE-PYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred cc-----ch---hhHHHHHHcCCCC-eEEEECCCCCCchHHHHHHHHhc
Confidence 52 11 1112222222333 57999999999999999988775
No 136
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.72 E-value=5.6e-17 Score=162.51 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
+|+++|.+|||||||+++|+++ ...+.||++... ..... .+..+++||+||+..+..+...+ ++ ++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~--~~~~~---~~~~~~i~D~~G~~~~~~~~~~~----~~--~a~~ 69 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP--TKLRL---DKYEVCIFDLGGGANFRGIWVNY----YA--EAHG 69 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE--EEEEE---CCEEEEEEECCCcHHHHHHHHHH----Hc--CCCE
Confidence 4899999999999999999986 346678887542 12211 23489999999999888887777 22 5999
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+|+|+|.+++.++ +.+..|+..+.... ...++|++||+||+|+....+. .
T Consensus 70 ii~V~D~s~~~s~-~~~~~~l~~l~~~~----------------------------~~~~~piliv~NK~Dl~~~~~~-~ 119 (167)
T cd04161 70 LVFVVDSSDDDRV-QEVKEILRELLQHP----------------------------RVSGKPILVLANKQDKKNALLG-A 119 (167)
T ss_pred EEEEEECCchhHH-HHHHHHHHHHHcCc----------------------------cccCCcEEEEEeCCCCcCCCCH-H
Confidence 9999999999887 77777777554321 1126899999999998532110 0
Q ss_pred hhhhHHHHHHHHHHcC--CeEEEEeccCC------CCHHHHHHHHH
Q psy11649 196 KRIAVQCLRYLAHVNG--ASLLFHSSLDP------GLVKRTRDILN 233 (890)
Q Consensus 196 r~~i~~~lr~la~~~G--a~l~etSAK~~------~nId~Lk~~I~ 233 (890)
.......+..++.+.+ +.+++|||++| .|+++..++|.
T Consensus 120 ~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 120 DVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred HHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 0111112344554443 56888999998 89999988875
No 137
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=1e-16 Score=162.92 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=108.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
...+|+++|++|||||||+++|+++. ..+.||++... ..... .+..+++||+||+..+..++..+ ++ +
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~---~~~~~~l~D~~G~~~~~~~~~~~----~~--~ 86 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTI---GNIKFKTFDLGGHEQARRLWKDY----FP--E 86 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--c
Confidence 36799999999999999999999853 34556666432 12111 23478999999998887776666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|+|+++..++ +....|+..+.+. ....++|++||+||+|+...
T Consensus 87 ad~iilV~D~~~~~s~-~~~~~~~~~i~~~----------------------------~~~~~~pvivv~NK~Dl~~~-- 135 (190)
T cd00879 87 VDGIVFLVDAADPERF-QESKEELDSLLSD----------------------------EELANVPFLILGNKIDLPGA-- 135 (190)
T ss_pred CCEEEEEEECCcHHHH-HHHHHHHHHHHcC----------------------------ccccCCCEEEEEeCCCCCCC--
Confidence 8999999999999887 4455555443321 11125899999999998521
Q ss_pred cchhhhhHHHHHHHHHH----------------cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHV----------------NGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~----------------~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
....+++.+... ..+.+++|||+++.|+++++++|...
T Consensus 136 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 136 -----VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred -----cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 222334443321 22468999999999999999988764
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=2.4e-16 Score=154.64 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
.|+++|++|||||||+++|++.. ..+.++++++..+...... ....+++|||||++++......+ ++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~----~~-- 73 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP--SGKRLGFIDVPGHEKFIKNMLAG----AG-- 73 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec--CCcEEEEEECCChHHHHHHHHhh----hh--
Confidence 58999999999999999999742 1233455555544333221 13479999999998775443333 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC-cEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV-PLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d 190 (890)
++|++++|+|+++.... .....+..+.. .+. |+++|+||+|+..
T Consensus 74 ~ad~ii~V~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~~~~ilv~NK~Dl~~- 118 (164)
T cd04171 74 GIDLVLLVVAADEGIMP--QTREHLEILEL--------------------------------LGIKRGLVVLTKADLVD- 118 (164)
T ss_pred cCCEEEEEEECCCCccH--hHHHHHHHHHH--------------------------------hCCCcEEEEEECccccC-
Confidence 59999999999874321 11222211110 123 8999999999852
Q ss_pred CCcchhhhhHHHHHHHHHH---cCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.+.......++.+.... .+.+++++||+++.|++++++.|.+
T Consensus 119 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 119 --EDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred --HHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 11122223344444444 4678999999999999999888754
No 139
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.71 E-value=2.1e-16 Score=158.43 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---------CCCCCc------cceeEEEEEEec----cccceEEEEEEcCCCcch
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---------TPKPTL------ALEYIYARKSGK----TVMKDICHLWELGSGTSR 96 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---------~~kpti------gvdY~f~~~~g~----~~~k~~l~IwDlpG~~~~ 96 (890)
.+|+++|++|||||||+++|++... .+.+++ |+.+........ ...+..+++|||||+..+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 3699999999999999999987321 122222 223221111110 223347999999999988
Q ss_pred hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
..+...+ ++ ++|++|+|+|+++..++ ..+..|.... . .++
T Consensus 81 ~~~~~~~----~~--~ad~~i~v~D~~~~~~~-~~~~~~~~~~----~-----------------------------~~~ 120 (179)
T cd01890 81 SYEVSRS----LA--ACEGALLLVDATQGVEA-QTLANFYLAL----E-----------------------------NNL 120 (179)
T ss_pred HHHHHHH----HH--hcCeEEEEEECCCCccH-hhHHHHHHHH----H-----------------------------cCC
Confidence 7777666 22 59999999999997765 4555554311 1 258
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+++|+||+|+.. .+ ......+++..+++. ++++||++|.|+++++++|...+
T Consensus 121 ~iiiv~NK~Dl~~-----~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 121 EIIPVINKIDLPS-----AD--PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CEEEEEECCCCCc-----CC--HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999842 11 122345666666764 89999999999999999887654
No 140
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.71 E-value=3.3e-16 Score=155.23 Aligned_cols=157 Identities=16% Similarity=0.188 Sum_probs=100.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC--CCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHH--hhhhcccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTP--KPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVA--SLFSSFSL 108 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~--kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li--~~~r~~~~ 108 (890)
+|+++|++|||||||+++|++..... .+..+.+..... ......+++||||||+... +..+ ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH---FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE---EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 79999999999999999999964321 121222211111 1112348999999997421 0000 00010011
Q ss_pred ccccCcEEEEEEeCCCcCch-HHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSL-WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~-~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
. +|++|+|+|.++..++ .+....|++.+.... .++|+++|+||+|+
T Consensus 79 ~---~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~------------------------------~~~pvilv~NK~Dl 125 (168)
T cd01897 79 L---RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF------------------------------KNKPVIVVLNKIDL 125 (168)
T ss_pred c---cCcEEEEEeCCcccccchHHHHHHHHHHHhhc------------------------------CcCCeEEEEEcccc
Confidence 2 6899999999998764 133445665544321 15899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.. .+. ... .++++...+..+++|||++|.|+++++++|...+
T Consensus 126 ~~-----~~~-~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 126 LT-----FED-LSE-IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred Cc-----hhh-HHH-HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 52 121 111 4555665678899999999999999999998775
No 141
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.71 E-value=1.8e-16 Score=157.15 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=105.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCcc----hhhHHhhh-hccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGTS----RLEVASLF-SSFSLT 109 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----~~~Li~~~-r~~~~~ 109 (890)
.|+++|.+|||||||+|+|++.... ..+..+.+....... ......+.+|||||... .+.+...+ +. +.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVR--VDDGRSFVVADIPGLIEGASEGKGLGHRFLRH--IE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEE--cCCCCeEEEEecCcccCcccccCCchHHHHHH--HH
Confidence 5899999999999999999974311 111122221111111 11113799999999742 22233333 21 11
Q ss_pred cccCcEEEEEEeCCCc-CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 110 AQSGFTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp-~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
++|++++|+|++++ .++ +++..|.+.+.+.... ..+.|+++|+||+|+.
T Consensus 78 --~~d~vi~v~D~~~~~~~~-~~~~~~~~~l~~~~~~---------------------------~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 78 --RTRLLLHVIDLSGDDDPV-EDYKTIRNELELYNPE---------------------------LLEKPRIVVLNKIDLL 127 (170)
T ss_pred --hCCEEEEEEecCCCCCHH-HHHHHHHHHHHHhCcc---------------------------ccccccEEEEEchhcC
Confidence 48999999999999 676 7888888877654211 1258999999999985
Q ss_pred CCCCcchhhhhHHHHHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
. +.........+... .+.+++++||+++.|++++++.|.++
T Consensus 128 ~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 D------EEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred C------chhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 2 12223334445555 47789999999999999999988765
No 142
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=3.2e-16 Score=151.64 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=106.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
|+++|++|||||||+++|++.. ..+.||++.++. ... .....+.+||+||+..+..+...+ ++ ++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~---~~~~~~~~~D~~g~~~~~~~~~~~----~~--~~d~ 70 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVT---KGNVTLKVWDLGGQPRFRSMWERY----CR--GVNA 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEE---ECCEEEEEEECCCCHhHHHHHHHH----Hh--cCCE
Confidence 7999999999999999999963 456678876642 222 122479999999999888877776 22 5899
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+++|+|++++.++ .....|+..+... ....++|+++|+||+|+.... .
T Consensus 71 ii~v~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~p~iiv~nK~D~~~~~---~ 118 (159)
T cd04159 71 IVYVVDAADRTAL-EAAKNELHDLLEK----------------------------PSLEGIPLLVLGNKNDLPGAL---S 118 (159)
T ss_pred EEEEEECCCHHHH-HHHHHHHHHHHcC----------------------------hhhcCCCEEEEEeCccccCCc---C
Confidence 9999999998887 4444555433221 112368999999999985311 1
Q ss_pred hhhhHHHHHHH----HHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 196 KRIAVQCLRYL----AHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 196 r~~i~~~lr~l----a~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
. .+....+ ....+.+++++|++++.|++++++.|..
T Consensus 119 ~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 119 V---DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred H---HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 1 1111111 1223467899999999999999888754
No 143
>KOG4252|consensus
Probab=99.69 E-value=1.9e-17 Score=164.21 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=137.5
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
.+..+|++++|+.+|||||++.++|.+ ...|+.|+|++|. .+.. ...++.++.+||++|+++|..+...| |
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdfl--erqi~v~~Edvr~mlWdtagqeEfDaItkAy----y 90 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFL--ERQIKVLIEDVRSMLWDTAGQEEFDAITKAY----Y 90 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhh--hHHHHhhHHHHHHHHHHhccchhHHHHHHHH----h
Confidence 456799999999999999999999986 5689999999964 2222 22233478999999999999999998 5
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ +|.+.++||.-++..|| +....|.+.+....+. ||.++|-||+|+.
T Consensus 91 r--gaqa~vLVFSTTDr~SF-ea~~~w~~kv~~e~~~------------------------------IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 91 R--GAQASVLVFSTTDRYSF-EATLEWYNKVQKETER------------------------------IPTVFVQNKIDLV 137 (246)
T ss_pred c--cccceEEEEecccHHHH-HHHHHHHHHHHHHhcc------------------------------CCeEEeeccchhh
Confidence 5 79999999999999999 9999999988776654 9999999999997
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+ ..+....+.+.+++.+.+.++.||+++..|+...+.|+...+.
T Consensus 138 e-----ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 138 E-----DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred H-----hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 4 4556677888999999999999999999999999999977653
No 144
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=7.7e-16 Score=156.95 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=106.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
..+|+++|.+|||||||+++|.++.. .+.||.+.... ... ..+.++.+||+||+.++..+...+ +. ++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~---~~~~~~~~~D~~G~~~~~~~~~~~----~~--~a 85 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELA---IGNIKFTTFDLGGHQQARRLWKDY----FP--EV 85 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEE---ECCEEEEEEECCCCHHHHHHHHHH----hC--CC
Confidence 57899999999999999999998633 34456554311 111 123479999999998888887777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++|+|+|++++.++ .....|+..+.+. ....++|+++|+||+|+....+
T Consensus 86 d~ii~vvD~~~~~~~-~~~~~~l~~l~~~----------------------------~~~~~~piliv~NK~Dl~~~~~- 135 (184)
T smart00178 86 NGIVYLVDAYDKERF-AESKRELDALLSD----------------------------EELATVPFLILGNKIDAPYAAS- 135 (184)
T ss_pred CEEEEEEECCcHHHH-HHHHHHHHHHHcC----------------------------hhhcCCCEEEEEeCccccCCCC-
Confidence 999999999999887 5555555433221 0112689999999999843221
Q ss_pred chhhhhHHHHHHHHHH------------cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHV------------NGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 194 e~r~~i~~~lr~la~~------------~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
..++++.... ....+++|||+++.|++++.++|...
T Consensus 136 ------~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 136 ------EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ------HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 1222221100 12349999999999999999998653
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=6.4e-16 Score=159.37 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=103.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hcc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SSF 106 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~~ 106 (890)
...++|+|+|++|||||||+++|++.... ..+..+++....... ......+.+|||||.... ..+...+ ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLR--LPDGREVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEE--ecCCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 44689999999999999999999986321 112222232221211 111227999999997431 1121222 001
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
.+. ++|++++|+|++++.++ ..+..|.+.+... ...++|+++|+||+|
T Consensus 117 ~~~--~~d~ii~v~D~~~~~~~-~~~~~~~~~l~~~-----------------------------~~~~~~viiV~NK~D 164 (204)
T cd01878 117 EVA--EADLLLHVVDASDPDYE-EQIETVEKVLKEL-----------------------------GAEDIPMILVLNKID 164 (204)
T ss_pred HHh--cCCeEEEEEECCCCChh-hHHHHHHHHHHHc-----------------------------CcCCCCEEEEEEccc
Confidence 112 48999999999998876 5555666544331 122589999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+.. ... .. ..+...+.+++++||+++.|++++++.|...
T Consensus 165 l~~-----~~~-~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 165 LLD-----DEE-LE----ERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred cCC-----hHH-HH----HHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 852 111 11 3445567789999999999999999988764
No 146
>KOG0393|consensus
Probab=99.67 E-value=1.3e-16 Score=163.72 Aligned_cols=167 Identities=19% Similarity=0.201 Sum_probs=129.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+|++|||+.+||||+|+..++.+ .+.|.||+--.|.-....+ ......+.+|||+||+.|..+.... |.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~-dg~~v~L~LwDTAGqedYDrlRpls----Y~-- 75 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVD-DGKPVELGLWDTAGQEDYDRLRPLS----YP-- 75 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEec-CCCEEEEeeeecCCCcccccccccC----CC--
Confidence 3689999999999999999999876 4588899886654322211 1222379999999999987765333 44
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++++||+++++.||.+...+|+.+++.++. ++|+|+||+|.||..+.
T Consensus 76 ~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp------------------------------~vpiiLVGtk~DLr~d~ 125 (198)
T KOG0393|consen 76 QTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP------------------------------NVPIILVGTKADLRDDP 125 (198)
T ss_pred CCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC------------------------------CCCEEEEeehHHhhhCH
Confidence 699999999999999997778899998888763 49999999999997432
Q ss_pred Cc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 192 EP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 192 d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.. ...-+..++.+.+|++.|+ .|++|||++..|+++.++.-...+.
T Consensus 126 ~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 126 STLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence 11 1124667889999999994 6999999999999988766655553
No 147
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=9.1e-16 Score=171.14 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFS 107 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~ 107 (890)
..|+|||.||||||||+++|++.. .+| |..++....... .......+.+||+||...- ..+...+ +.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~y-pfTT~~p~~G~v--~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh-- 233 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADY-PFTTLHPNLGVV--RVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH-- 233 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCC-CCceeCceEEEE--EeCCCcEEEEEeCCCccCCCCccccHHHHHHHH--
Confidence 458999999999999999999842 122 223333222111 1112237999999997532 2343343 21
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
+ ..++++|+|+|+++++++ +++..|.+++..+... ....|++||+||+|+
T Consensus 234 i--e~a~vlI~ViD~s~~~s~-e~~~~~~~EL~~~~~~---------------------------L~~kp~IIV~NKiDL 283 (335)
T PRK12299 234 I--ERTRLLLHLVDIEAVDPV-EDYKTIRNELEKYSPE---------------------------LADKPRILVLNKIDL 283 (335)
T ss_pred h--hhcCEEEEEEcCCCCCCH-HHHHHHHHHHHHhhhh---------------------------cccCCeEEEEECccc
Confidence 1 248999999999998876 8888998888765332 125899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.. .........+.++...+..+++|||+++.|++++++.|...+.
T Consensus 284 ~~-----~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 284 LD-----EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred CC-----chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 52 2222333455556667789999999999999999999988764
No 148
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.66 E-value=7e-16 Score=183.73 Aligned_cols=146 Identities=20% Similarity=0.126 Sum_probs=104.2
Q ss_pred cCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH------HhhhhccccccccC
Q psy11649 42 GTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV------ASLFSSFSLTAQSG 113 (890)
Q Consensus 42 Gd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L------i~~~r~~~~~~~~a 113 (890)
|++|||||||+|+|++.. ....|+++++........ .+..+++|||||++++... ...+ +...++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~---~~~~i~lvDtPG~~~~~~~s~~e~v~~~~----l~~~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF---QGEDIEIVDLPGIYSLTTFSLEEEVARDY----LLNEKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE---CCeEEEEEECCCccccCccchHHHHHHHH----HhhcCC
Confidence 899999999999999853 233477777754322222 2236899999999887443 2323 101148
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++++|+|.++.++ ++....+ +. ..++|+++|+||+|+.
T Consensus 74 DvvI~VvDat~ler---~l~l~~q-l~--------------------------------~~~~PiIIVlNK~Dl~----- 112 (591)
T TIGR00437 74 DLVVNVVDASNLER---NLYLTLQ-LL--------------------------------ELGIPMILALNLVDEA----- 112 (591)
T ss_pred CEEEEEecCCcchh---hHHHHHH-HH--------------------------------hcCCCEEEEEehhHHH-----
Confidence 99999999998654 2222221 11 1268999999999985
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++..+..+.+.+++.+|+++++|||++|.|++++++.+.+..
T Consensus 113 -~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 113 -EKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred -HhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 233344567889999999999999999999999999998764
No 149
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.66 E-value=2.2e-15 Score=156.38 Aligned_cols=168 Identities=19% Similarity=0.239 Sum_probs=122.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+||+++|++|||||||+++|.+.. ..+.+|++..+.-....... ...++.+|||+|++++..+...| +. +
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~Dt~gq~~~~~~~~~y----~~--~ 77 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYR-RNIKLQLWDTAGQEEYRSLRPEY----YR--G 77 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCC-CEEEEEeecCCCHHHHHHHHHHH----hc--C
Confidence 4899999999999999999999964 35778888665432222221 14479999999999999999888 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|+|.++..++.+....|.+.+..... ..+|+++|+||+|+.....
T Consensus 78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-----------------------------~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 78 ANGILIVYDSTLRESSDELTEEWLEELRELAP-----------------------------DDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred CCEEEEEEecccchhhhHHHHHHHHHHHHhCC-----------------------------CCceEEEEecccccccchh
Confidence 99999999999977777888999987766432 2589999999999974321
Q ss_pred cch-------hhhhHHHHHHHHHHc---CCeEEEEecc--CCCCHHHHHHHHHHHHhc
Q psy11649 193 PNK-------KRIAVQCLRYLAHVN---GASLLFHSSL--DPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 193 ~e~-------r~~i~~~lr~la~~~---Ga~l~etSAK--~~~nId~Lk~~I~~~lf~ 238 (890)
... +..........+... ...++++|++ ++.++++++..+...+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 129 SSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred HHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 100 122222222222222 3338999999 999999998888777743
No 150
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=2.5e-15 Score=149.86 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=104.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
..++|+++|++|||||||+++|++... .+.++.|..+. .... .+..+.+||++|+..+...+..+ ++ +
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~---~~~~~~~~D~~G~~~~~~~~~~~----~~--~ 81 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQS---DGFKLNVWDIGGQRAIRPYWRNY----FE--N 81 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--C
Confidence 368999999999999999999998632 35567664421 2221 13479999999998776666655 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
++++++|+|++++.++ .....|+..+.... ...++|+++++||+|+....
T Consensus 82 ~~~ii~v~D~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~p~ivv~nK~D~~~~~- 131 (173)
T cd04155 82 TDCLIYVIDSADKKRL-EEAGAELVELLEEE----------------------------KLAGVPVLVFANKQDLATAA- 131 (173)
T ss_pred CCEEEEEEeCCCHHHH-HHHHHHHHHHHhCh----------------------------hhcCCCEEEEEECCCCccCC-
Confidence 8999999999998877 55555554332211 11268999999999985311
Q ss_pred cchhhhhHHHHHHHHHHcCC--------eEEEEeccCCCCHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGA--------SLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga--------~l~etSAK~~~nId~Lk~~I~~ 234 (890)
. ...++..+++ .++++||++|.|+++++++|.+
T Consensus 132 --~-------~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 132 --P-------AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred --C-------HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1 1122223332 4789999999999999888753
No 151
>KOG0073|consensus
Probab=99.65 E-value=3.7e-15 Score=146.65 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=120.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+++|+++|..|+||||++++|.+. .+...||.| |...+... ....++|||++||..+++++..| |. +
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g--f~Iktl~~---~~~~L~iwDvGGq~~lr~~W~nY----fe--s 83 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG--FQIKTLEY---KGYTLNIWDVGGQKTLRSYWKNY----FE--S 83 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccc--eeeEEEEe---cceEEEEEEcCCcchhHHHHHHh----hh--c
Confidence 3789999999999999999999996 345567777 33333332 23489999999999999999999 33 6
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
.|++|.|+|.+++.++.+. .+.+++.+.+ .+-.|.|++|++||.|+...++
T Consensus 84 tdglIwvvDssD~~r~~e~----~~~L~~lL~e-------------------------erlaG~~~Lvlank~dl~~~l~ 134 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQEC----KQELTELLVE-------------------------ERLAGAPLLVLANKQDLPGALS 134 (185)
T ss_pred cCeEEEEEECchHHHHHHH----HHHHHHHHhh-------------------------hhhcCCceEEEEecCcCccccC
Confidence 9999999999999887222 2222222211 1223789999999999964444
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+.-. ..-.+..++++..+.++-|||.+|+++.+-.+++.+.+.
T Consensus 135 ~~~i~-~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 135 LEEIS-KALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred HHHHH-HhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHH
Confidence 32221 124567777888899999999999998888888877764
No 152
>PTZ00099 rab6; Provisional
Probab=99.65 E-value=2.4e-15 Score=153.06 Aligned_cols=138 Identities=10% Similarity=0.097 Sum_probs=109.0
Q ss_pred CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHH
Q psy11649 59 NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAK 138 (890)
Q Consensus 59 ~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~ 138 (890)
.+.+.||+|.+|.-.... .......++||||+|++++..+...+ ++ ++|++|+|||++++.+| +.+..|+..
T Consensus 6 ~~~~~~Tig~~~~~~~~~-~~~~~v~l~iwDt~G~e~~~~~~~~~----~~--~ad~~ilv~D~t~~~sf-~~~~~w~~~ 77 (176)
T PTZ00099 6 DNNYQSTIGIDFLSKTLY-LDEGPVRLQLWDTAGQERFRSLIPSY----IR--DSAAAIVVYDITNRQSF-ENTTKWIQD 77 (176)
T ss_pred CCCCCCccceEEEEEEEE-ECCEEEEEEEEECCChHHhhhccHHH----hC--CCcEEEEEEECCCHHHH-HHHHHHHHH
Confidence 356889999887432222 22223489999999999998888877 33 69999999999999998 888889887
Q ss_pred HHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649 139 FRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS 218 (890)
Q Consensus 139 I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS 218 (890)
+.+.. ..++|++|||||+|+.. .+.+...++..++..+++.+++||
T Consensus 78 i~~~~-----------------------------~~~~piilVgNK~DL~~-----~~~v~~~e~~~~~~~~~~~~~e~S 123 (176)
T PTZ00099 78 ILNER-----------------------------GKDVIIALVGNKTDLGD-----LRKVTYEEGMQKAQEYNTMFHETS 123 (176)
T ss_pred HHHhc-----------------------------CCCCeEEEEEECccccc-----ccCCCHHHHHHHHHHcCCEEEEEE
Confidence 75431 12589999999999852 345556677888888999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhc
Q psy11649 219 SLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 219 AK~~~nId~Lk~~I~~~lf~ 238 (890)
|++|.|++++++.|...+..
T Consensus 124 Ak~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 124 AKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988744
No 153
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=6.6e-15 Score=141.05 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=109.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQ 111 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~ 111 (890)
.+||+++|.+|||||||+++|++.. ..+.++++.++........ .....+.+||+||+..+..+...+ +
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~------- 72 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEED-GKTYKFNLLDTAGQEDYRAIRRLYYR------- 72 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEEC-CEEEEEEEEECCCcccchHHHHHHHh-------
Confidence 3689999999999999999999864 2445677766543222211 111478999999998887777666 2
Q ss_pred cCcEEEEEEeCCCc-CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp-~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++.++.++|++.. .++.+....|...+...... ++|+++|+||+|+..
T Consensus 73 ~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-----------------------------~~p~ivv~nK~D~~~- 122 (161)
T TIGR00231 73 AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-----------------------------NVPIILVGNKIDLRD- 122 (161)
T ss_pred hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-----------------------------CCcEEEEEEcccCCc-
Confidence 37889999999887 66633334666555443211 589999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
.....+....+....+.+++++||+++.|+++++++|.
T Consensus 123 -----~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 123 -----AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred -----chhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 11233334444444567899999999999999988764
No 154
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.64 E-value=2.5e-15 Score=152.51 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=110.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
.+..+|+++|.+|||||||+++|..+. ..+.||+|.+.. .... .+..+++||++|+.+++.++..| +.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~---~~~~~~~~d~gG~~~~~~~w~~y----~~-- 80 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKY---KGYSLTIWDLGGQESFRPLWKSY----FQ-- 80 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEE---TTEEEEEEEESSSGGGGGGGGGG----HT--
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeee---CcEEEEEEeccccccccccceee----cc--
Confidence 347899999999999999999999753 356788885532 2222 34479999999999999999888 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++|+|+|.++++++ .... +.+.+++.. ....++|++|++||+|+....
T Consensus 81 ~~~~iIfVvDssd~~~l-~e~~-------~~L~~ll~~---------------------~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERL-QEAK-------EELKELLND---------------------PELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp TESEEEEEEETTGGGGH-HHHH-------HHHHHHHTS---------------------GGGTTSEEEEEEESTTSTTSS
T ss_pred ccceeEEEEecccceee-cccc-------cchhhhcch---------------------hhcccceEEEEeccccccCcc
Confidence 58999999999999887 2222 222222210 111268999999999985332
Q ss_pred CcchhhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 192 d~e~r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+.++ +... +..+.....+.++.|||++|.|+++..++|...
T Consensus 132 ~~~~---i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 132 SEEE---IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp THHH---HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hhhH---HHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 2111 1111 111111234569999999999999999998764
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.64 E-value=2.5e-15 Score=154.46 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=97.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCC-----------CcchhhHH
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGS-----------GTSRLEVA 100 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG-----------~~~~~~Li 100 (890)
...+|+++|.+|||||||+|+|++... .+.|+++.+. ...... .+.+||||| +++++.++
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~----~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP----NHYDWG---DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc----eEEeec---ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 467999999999999999999998643 2334444321 111111 589999999 34555554
Q ss_pred hhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHH--------HHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649 101 SLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLA--------KFRAIFESNESVREKRGSFEHFRTADEHRDKGLI 171 (890)
Q Consensus 101 ~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq--------~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li 171 (890)
..+ +.... .++++++|+|.+...++ +..|.+ .+...+
T Consensus 81 ~~~~~~~~~---~~~~vi~v~d~~~~~~~---~~~~~~~~~~~~~~~l~~~~---------------------------- 126 (201)
T PRK04213 81 VRYIEDNAD---RILAAVLVVDGKSFIEI---IERWEGRGEIPIDVEMFDFL---------------------------- 126 (201)
T ss_pred HHHHHhhhh---hheEEEEEEeCcccccc---ccccccCCCcHHHHHHHHHH----------------------------
Confidence 444 21111 26788888887653221 123321 011111
Q ss_pred cCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---------eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 172 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---------SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 172 ~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---------~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
...++|+++|+||+|+.. .+ .+.+.+++..+|+ .+++|||++| |++++++.|...+
T Consensus 127 ~~~~~p~iiv~NK~Dl~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 127 RELGIPPIVAVNKMDKIK-----NR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HHcCCCeEEEEECccccC-----cH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 113689999999999852 11 2345566666665 4899999999 9999999998875
No 156
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.63 E-value=2.9e-15 Score=166.81 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFS 107 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~ 107 (890)
..|+|||.||||||||+++|++.. .+| |..++........ ......+.|||+||.... ..+...+ +.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y-~fTT~~p~ig~v~--~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh-- 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADY-PFTTLVPNLGVVR--VDDGRSFVIADIPGLIEGASEGAGLGHRFLKH-- 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCccCCEEEEEE--eCCceEEEEEeCCCcccCCcccccHHHHHHHH--
Confidence 568999999999999999999842 122 2222221111111 111247999999997532 2344344 22
Q ss_pred cccccCcEEEEEEeCCCc---CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649 108 LTAQSGFTLVLMLDLSRL---NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK 184 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp---~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK 184 (890)
+ ..++++|+|+|+++. ..+ +++..|.+++..+... ....|++||+||
T Consensus 233 i--erad~ll~VvD~s~~~~~~~~-e~l~~l~~EL~~~~~~---------------------------l~~kp~IIV~NK 282 (329)
T TIGR02729 233 I--ERTRVLLHLIDISPLDGRDPI-EDYEIIRNELKKYSPE---------------------------LAEKPRIVVLNK 282 (329)
T ss_pred H--HhhCEEEEEEcCccccccCHH-HHHHHHHHHHHHhhhh---------------------------hccCCEEEEEeC
Confidence 1 148999999999986 444 7788888777654322 125899999999
Q ss_pred ccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 185 YDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 185 ~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+|+.. . ....+..+.++..++..++++||+++.|++++++.|...+
T Consensus 283 ~DL~~-----~-~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 283 IDLLD-----E-EELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCC-----h-HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 99852 2 2234556677777788999999999999999999987754
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=7.5e-15 Score=171.11 Aligned_cols=185 Identities=17% Similarity=0.128 Sum_probs=117.6
Q ss_pred CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649 2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK 78 (890)
Q Consensus 2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~ 78 (890)
|.++|.+.+.+.+.+..... . ......+|+|+|.+|||||||+|+|++.. ....++++.+........
T Consensus 186 gi~eL~~~i~~~l~~~~~~~-~-------~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~- 256 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRVG-S-------ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL- 256 (472)
T ss_pred CcHHHHHHHHhhcccccccc-c-------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-
Confidence 56678888877764421110 0 01235899999999999999999999864 244567776643222221
Q ss_pred cccceEEEEEEcCCCcchh------hHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649 79 TVMKDICHLWELGSGTSRL------EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE 151 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~------~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~ 151 (890)
.+..+.+|||||..+.. ...... +...++ ++|++|+|+|+++..++ ..+ .++..+.
T Consensus 257 --~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~--~ad~vilV~Da~~~~s~-~~~-~~~~~~~----------- 319 (472)
T PRK03003 257 --GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIE--AAEVAVVLIDASEPISE-QDQ-RVLSMVI----------- 319 (472)
T ss_pred --CCEEEEEEECCCccccccccchHHHHHHHHHHHHHh--cCCEEEEEEeCCCCCCH-HHH-HHHHHHH-----------
Confidence 22367899999964221 111111 111122 59999999999998886 333 2332221
Q ss_pred hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHH-HHHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649 152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSSLDPGLVKRTRD 230 (890)
Q Consensus 152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr-~la~~~Ga~l~etSAK~~~nId~Lk~ 230 (890)
..++|++||+||+|+.. .+.+....++++ .++....+++++|||++|.|++++++
T Consensus 320 ---------------------~~~~piIiV~NK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 320 ---------------------EAGRALVLAFNKWDLVD---EDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred ---------------------HcCCCEEEEEECcccCC---hhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHH
Confidence 12689999999999962 112222333333 33333457899999999999999999
Q ss_pred HHHHHH
Q psy11649 231 ILNHYA 236 (890)
Q Consensus 231 ~I~~~l 236 (890)
.|...+
T Consensus 376 ~i~~~~ 381 (472)
T PRK03003 376 ALETAL 381 (472)
T ss_pred HHHHHH
Confidence 998775
No 158
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.62 E-value=7.4e-15 Score=159.10 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-h----hHHhhhhcccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-L----EVASLFSSFSL 108 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~----~Li~~~r~~~~ 108 (890)
+|+|+|.+|||||||+|+|++... ..+|.++.+... .. ....+.++.+|||||.... . .+...+ ...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i--~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~-~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GI--HTTGASQIIFIDTPGFHEKKHSLNRLMMKEA-RSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EE--EEcCCcEEEEEECcCCCCCcchHHHHHHHHH-HHHH
Confidence 699999999999999999999632 334444444211 11 1112237999999997542 1 122212 1112
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
. ++|++++|+|.++..+. . ..+++.+. ..++|+++|+||+|+.
T Consensus 78 ~--~aDvvl~VvD~~~~~~~--~-~~i~~~l~--------------------------------~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 78 G--GVDLILFVVDSDQWNGD--G-EFVLTKLQ--------------------------------NLKRPVVLTRNKLDNK 120 (270)
T ss_pred h--hCCEEEEEEECCCCCch--H-HHHHHHHH--------------------------------hcCCCEEEEEECeeCC
Confidence 2 59999999999997775 2 33333221 1258999999999985
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
. +.........++...+. .++++||++|.|+++++++|...+..
T Consensus 121 ~------~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 121 F------KDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred C------HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 2 22233445566665554 79999999999999999999988743
No 159
>KOG1486|consensus
Probab=99.62 E-value=3.2e-15 Score=155.59 Aligned_cols=246 Identities=15% Similarity=0.097 Sum_probs=171.4
Q ss_pred CCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---e-ccccceEEEEEEcCCCc
Q psy11649 19 PSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---G-KTVMKDICHLWELGSGT 94 (890)
Q Consensus 19 ~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g-~~~~k~~l~IwDlpG~~ 94 (890)
+..+++++++...+.+..+|++||-|+||||||+..++... +. +..|.|++.+ | ....+..+++.|+||..
T Consensus 46 ~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~----Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIi 120 (364)
T KOG1486|consen 46 KGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTH----SE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGII 120 (364)
T ss_pred CCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcch----hh-hhceeeeEEEeecceEEecCceEEEecCcccc
Confidence 33444677899999999999999999999999999999832 22 2357777766 3 22233489999999975
Q ss_pred ch--------hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHh----------------------
Q psy11649 95 SR--------LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE---------------------- 144 (890)
Q Consensus 95 ~~--------~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~---------------------- 144 (890)
+. ++++...|. +|.|++|+|.+..+.--..|++-++.+.-.+.
T Consensus 121 eGAsqgkGRGRQviavArt-------aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~ 193 (364)
T KOG1486|consen 121 EGASQGKGRGRQVIAVART-------ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTV 193 (364)
T ss_pred cccccCCCCCceEEEEeec-------ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeee
Confidence 43 344444333 99999999999977653456666665542211
Q ss_pred -----------hhhhhh---hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc
Q psy11649 145 -----------SNESVR---EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN 210 (890)
Q Consensus 145 -----------~ll~~~---~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~ 210 (890)
.++-++ ++..-+++..+.+++.|....+...++++-|-||+|.. ..++..++|++-
T Consensus 194 ~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~v----------s~eevdrlAr~P 263 (364)
T KOG1486|consen 194 PLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQV----------SIEEVDRLARQP 263 (364)
T ss_pred ccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeecccee----------cHHHHHHHhcCC
Confidence 111122 33334555556666666655667789999999999975 245677888775
Q ss_pred CCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCC-CCCCCCccccccccccccch
Q psy11649 211 GASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HGKDASLESGGRGFNRSRGM 289 (890)
Q Consensus 211 Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r~~~~~~~~~~~~~~~~~~ 289 (890)
+. +-+|+..+-|++.+.+.|-..+- ..+.+..+.|.-. ..+.|+ +|++++.++++.++|+++..
T Consensus 264 ns--vViSC~m~lnld~lle~iWe~l~-----------L~rvYtKk~g~~P--dfdd~~vlr~g~tve~~C~~iHr~l~~ 328 (364)
T KOG1486|consen 264 NS--VVISCNMKLNLDRLLERIWEELN-----------LVRVYTKKKGQRP--DFDDPLVLRKGSTVEDVCHRIHRTLAA 328 (364)
T ss_pred Cc--EEEEeccccCHHHHHHHHHHHhc-----------eEEEEecCCCCCC--CCCCceEEeCCCcHHHHHHHHHHHHHH
Confidence 54 44688888999999998877762 2222233333222 134567 89999999999999999999
Q ss_pred hHHHhhcccccc
Q psy11649 290 KFEKKRGWIEGT 301 (890)
Q Consensus 290 ~f~~~~~w~~~~ 301 (890)
.|+++.+|-.+.
T Consensus 329 qfkyAlVWGtSa 340 (364)
T KOG1486|consen 329 QFKYALVWGTSA 340 (364)
T ss_pred hhceeeEecccc
Confidence 999999995443
No 160
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.61 E-value=1.4e-14 Score=143.08 Aligned_cols=156 Identities=12% Similarity=0.006 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
.|+|+|.+|||||||+++|++.... +.++.+.++...........+..+.+|||||+..+..+.... +. .+|
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~----~~--~~d 75 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARG----AS--LTD 75 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHH----Hh--hcC
Confidence 5899999999999999999985432 223334333222222211123479999999998877766555 11 499
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++++|+|+++.... .... .+..++ ..++|+++|+||+|+....
T Consensus 76 ~il~v~d~~~~~~~-~~~~-~~~~~~--------------------------------~~~~p~ivv~NK~Dl~~~~--- 118 (168)
T cd01887 76 IAILVVAADDGVMP-QTIE-AIKLAK--------------------------------AANVPFIVALNKIDKPNAN--- 118 (168)
T ss_pred EEEEEEECCCCccH-HHHH-HHHHHH--------------------------------HcCCCEEEEEEceeccccc---
Confidence 99999999985432 1111 111111 1268999999999985211
Q ss_pred hhhhhHHHHHHHHH----H--cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 195 KKRIAVQCLRYLAH----V--NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 195 ~r~~i~~~lr~la~----~--~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
... ....+..+.. . .+++++++||+++.|+++++++|....
T Consensus 119 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 119 PER-VKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHH-HHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 111 1122222211 1 236799999999999999999998764
No 161
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.61 E-value=8.4e-15 Score=143.07 Aligned_cols=147 Identities=19% Similarity=0.144 Sum_probs=101.4
Q ss_pred EEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh------HHhhh-hcccccc
Q psy11649 40 LIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE------VASLF-SSFSLTA 110 (890)
Q Consensus 40 LVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~------Li~~~-r~~~~~~ 110 (890)
|+|.+|||||||++++++.. ..+.++++++......... +..+.+|||||+..+.. +...+ ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~----- 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG---GKEIEIVDLPGTYSLSPYSEDEKVARDFLLG----- 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC---CeEEEEEECCCccccCCCChhHHHHHHHhcC-----
Confidence 58999999999999999863 2334666655433222221 23799999999876543 23333 11
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
.++|++|+|+|.+++.+. ..|...+.+ .++|+++|+||+|+...
T Consensus 73 ~~~d~vi~v~d~~~~~~~----~~~~~~~~~--------------------------------~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 73 EKPDLIVNVVDATNLERN----LYLTLQLLE--------------------------------LGLPVVVALNMIDEAEK 116 (158)
T ss_pred CCCcEEEEEeeCCcchhH----HHHHHHHHH--------------------------------cCCCEEEEEehhhhccc
Confidence 149999999999986542 233332211 25899999999999531
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..+......++..++++++++||+++.|++++++.+...+
T Consensus 117 ------~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 117 ------RGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------ccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 1122334577778899999999999999999998887653
No 162
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=1e-14 Score=163.84 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=103.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc--hhhHHhhh--hccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS--RLEVASLF--SSFS 107 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~--~~~Li~~~--r~~~ 107 (890)
...+|+++|.+|||||||+|+|++... ...+..++++...... ...+..+.+|||+|..+ -..+...+ +.+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~--~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLD--LPDGGEVLLTDTVGFIRDLPHELVAAFRATLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEE--eCCCceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 357999999999999999999999642 1224444554432222 22234799999999732 23333333 1111
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
+. ++|++++|+|++++.+. +.+..|.+.+.+. ...++|+++|+||+|+
T Consensus 266 ~~--~ADlil~VvD~s~~~~~-~~~~~~~~~L~~l-----------------------------~~~~~piIlV~NK~Dl 313 (351)
T TIGR03156 266 VR--EADLLLHVVDASDPDRE-EQIEAVEKVLEEL-----------------------------GAEDIPQLLVYNKIDL 313 (351)
T ss_pred HH--hCCEEEEEEECCCCchH-HHHHHHHHHHHHh-----------------------------ccCCCCEEEEEEeecC
Confidence 22 59999999999999876 5566665544331 1125799999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.. ... ...+.. ....++++||+++.|+++|++.|...
T Consensus 314 ~~-----~~~-----v~~~~~-~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 314 LD-----EPR-----IERLEE-GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CC-----hHh-----HHHHHh-CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 52 111 111111 22468999999999999999988654
No 163
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.61 E-value=5e-15 Score=147.94 Aligned_cols=141 Identities=18% Similarity=0.125 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHH-hhhhccccccccCcE
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVA-SLFSSFSLTAQSGFT 115 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li-~~~r~~~~~~~~ad~ 115 (890)
+|+++|.+|||||||+|+|.+......++.+++|. .. .+|||||.+...... ..... .++ ++|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~v~~~---------~~---~~iDtpG~~~~~~~~~~~~~~-~~~--~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQAVEFN---------DK---GDIDTPGEYFSHPRWYHALIT-TLQ--DVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccCccceEEEEC---------CC---CcccCCccccCCHHHHHHHHH-HHh--cCCE
Confidence 79999999999999999998754333344443321 11 379999985332111 11100 022 4999
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+++|+|.++..++ +..|+..+ ..+.|+++|+||+|+..
T Consensus 68 il~v~d~~~~~s~---~~~~~~~~---------------------------------~~~~~ii~v~nK~Dl~~------ 105 (158)
T PRK15467 68 LIYVHGANDPESR---LPAGLLDI---------------------------------GVSKRQIAVISKTDMPD------ 105 (158)
T ss_pred EEEEEeCCCcccc---cCHHHHhc---------------------------------cCCCCeEEEEEccccCc------
Confidence 9999999998875 22343211 12579999999999842
Q ss_pred hhhhHHHHHHHHHHcCC--eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 196 KRIAVQCLRYLAHVNGA--SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 196 r~~i~~~lr~la~~~Ga--~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
. ..+.+.+++...++ ++++|||+++.|+++++++|...+
T Consensus 106 ~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 106 A--DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred c--cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 1 12446677777775 899999999999999999998775
No 164
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.60 E-value=2.7e-13 Score=153.06 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh--hHHhhh---hcc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL--EVASLF---SSF 106 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~--~Li~~~---r~~ 106 (890)
..|++||.||||||||+|||+++. .++ |+++-|-.|.... .. ...+.+.||+|.+... .+.... ...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~-pGvTRDr~y~~~~--~~-~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT-PGVTRDRIYGDAE--WL-GREFILIDTGGLDDGDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC-CCCccCCccceeE--Ec-CceEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence 579999999999999999999963 344 7888773332222 11 2269999999986432 222222 111
Q ss_pred ccccccCcEEEEEEeCCCcCc-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNS-LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S-~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
.+. .||++|+|+|....-+ ..+.+..|+. ..+.|+++|+||+
T Consensus 80 Ai~--eADvilfvVD~~~Git~~D~~ia~~Lr-----------------------------------~~~kpviLvvNK~ 122 (444)
T COG1160 80 AIE--EADVILFVVDGREGITPADEEIAKILR-----------------------------------RSKKPVILVVNKI 122 (444)
T ss_pred HHH--hCCEEEEEEeCCCCCCHHHHHHHHHHH-----------------------------------hcCCCEEEEEEcc
Confidence 111 4999999999887333 2123333332 1258999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|-.+ .. ....+ ..++|. ..+.+||-.|.|+..|.+.+...+
T Consensus 123 D~~~-----~e----~~~~e-fyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 123 DNLK-----AE----ELAYE-FYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred cCch-----hh----hhHHH-HHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 9741 11 11222 234564 489999999999999999998876
No 165
>PRK15494 era GTPase Era; Provisional
Probab=99.59 E-value=2.7e-14 Score=159.82 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=103.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-hhhHHhhh-h--c
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-RLEVASLF-S--S 105 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-~~~Li~~~-r--~ 105 (890)
.+..+|+++|++|||||||+|+|++... .+++..+.++...... ..+.++.+|||||... +..+.... + .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~---~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT---LKDTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE---eCCeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 4456999999999999999999998643 2334444332221111 1234799999999843 22222221 1 1
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
..+. ++|++++|+|.++.-. +....|++.+++ .+.|.++|+||+
T Consensus 127 ~~l~--~aDvil~VvD~~~s~~--~~~~~il~~l~~--------------------------------~~~p~IlViNKi 170 (339)
T PRK15494 127 SSLH--SADLVLLIIDSLKSFD--DITHNILDKLRS--------------------------------LNIVPIFLLNKI 170 (339)
T ss_pred HHhh--hCCEEEEEEECCCCCC--HHHHHHHHHHHh--------------------------------cCCCEEEEEEhh
Confidence 1133 6999999999776322 222334443321 146788999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFSSH 240 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf~~~ 240 (890)
|+.. . . ...+.+++...+ ..++++||++|.|+++++++|...+...+
T Consensus 171 Dl~~-----~--~-~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 171 DIES-----K--Y-LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred cCcc-----c--c-HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 9842 1 1 234445554443 57999999999999999999998875433
No 166
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.59 E-value=1.9e-14 Score=147.63 Aligned_cols=148 Identities=15% Similarity=0.067 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CC--CC------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK--ND--TP------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV 99 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~--~~--~~------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L 99 (890)
.+|+++|++|||||||+++|++. .. .+ .++.|.++...... .......+++|||||+++|...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTA-VTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeE-EEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999999972 11 11 11233322111111 1122348999999999998887
Q ss_pred HhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE
Q psy11649 100 ASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI 179 (890)
Q Consensus 100 i~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI 179 (890)
...+ ++ ++|++++|+|+++... .....|+..+. ..++|++
T Consensus 82 ~~~~----~~--~~d~~ilV~d~~~~~~--~~~~~~~~~~~--------------------------------~~~~p~i 121 (194)
T cd01891 82 VERV----LS--MVDGVLLLVDASEGPM--PQTRFVLKKAL--------------------------------ELGLKPI 121 (194)
T ss_pred HHHH----HH--hcCEEEEEEECCCCcc--HHHHHHHHHHH--------------------------------HcCCCEE
Confidence 7777 22 4999999999998432 23333332221 1268999
Q ss_pred EEeecccCCCCCCcchhhhhHHHHHHHHH-------HcCCeEEEEeccCCCCHHHH
Q psy11649 180 LIGGKYDLFENLEPNKKRIAVQCLRYLAH-------VNGASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 180 VVgNK~Dl~~d~d~e~r~~i~~~lr~la~-------~~Ga~l~etSAK~~~nId~L 228 (890)
+|+||+|+.. ........+++.+.. ..+++++++||++|.|+.++
T Consensus 122 iv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 122 VVINKIDRPD----ARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred EEEECCCCCC----CCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 9999999852 112223344444442 34788999999999888554
No 167
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.58 E-value=4.9e-14 Score=141.50 Aligned_cols=154 Identities=14% Similarity=0.024 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchhh
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE 98 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~ 98 (890)
+|+|+|.+|+|||||+|+|++..... ..++++++.+..... ....+.+||+||...+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDtpG~~~~~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW---PDRRVNFIDTPGHEDFSS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee---CCEEEEEEeCCCcHHHHH
Confidence 48999999999999999999853321 112233322211111 134799999999987766
Q ss_pred HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649 99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL 178 (890)
Q Consensus 99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi 178 (890)
....+ ++ ++|++++|+|.+++.+. ....++..+.. .++|+
T Consensus 78 ~~~~~----~~--~~d~~i~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~~i 117 (189)
T cd00881 78 EVIRG----LS--VSDGAILVVDANEGVQP--QTREHLRIARE--------------------------------GGLPI 117 (189)
T ss_pred HHHHH----HH--hcCEEEEEEECCCCCcH--HHHHHHHHHHH--------------------------------CCCCe
Confidence 65555 11 49999999999987664 33333332221 25899
Q ss_pred EEEeecccCCCCCCcchhhhhHHHHHHHHHH--------------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHV--------------NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~--------------~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|+||+|+.. ++........+++.... .+.+++++||+++.|++++++.|.+.+
T Consensus 118 ~iv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 118 IVAINKIDRVG---EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred EEEEECCCCcc---hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 99999999963 12222233344444433 357799999999999999999998875
No 168
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.57 E-value=2.4e-14 Score=142.38 Aligned_cols=162 Identities=18% Similarity=0.133 Sum_probs=100.4
Q ss_pred EEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhhhcccccccc
Q psy11649 40 LIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLFSSFSLTAQS 112 (890)
Q Consensus 40 LVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~r~~~~~~~~ 112 (890)
|+|++|||||||+|+|++.. .++ +..+.+..+.... ......+.+||+||.... +.+...+. ..++ +
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~-~~~t~~~~~~~~~--~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~-~~~~--~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANY-PFTTLEPNLGVVE--VPDGARIQVADIPGLIEGASEGRGLGNQFL-AHIR--R 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCC-CceeecCcceEEE--cCCCCeEEEEeccccchhhhcCCCccHHHH-HHHh--c
Confidence 58999999999999999863 222 2222222221111 111347999999997421 22221210 0012 4
Q ss_pred CcEEEEEEeCCCcC------chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 113 GFTLVLMLDLSRLN------SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 113 ad~IIIV~DlSnp~------S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
++++++|+|.+++. ++ +.+..|...+........ .....++|+++|+||+|
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------------~~~~~~~p~ivv~NK~D 131 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPL-EDYEILNAELKLYDLETI----------------------LGLLTAKPVIYVLNKID 131 (176)
T ss_pred cCEEEEEEeccCCccccccCHH-HHHHHHHHHHHHhhhhhH----------------------HHHHhhCCeEEEEEchh
Confidence 89999999999984 44 677777776654321100 00012589999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+.. ............+...+..++++||+++.|++++.+.+.++
T Consensus 132 l~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 132 LDD-----AEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCc-----hhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 852 22211111334455567789999999999999999888764
No 169
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=3.5e-14 Score=162.56 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---ec--cccceEEEEEEcCCCcc----hhhHHhhh-hcc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GK--TVMKDICHLWELGSGTS----RLEVASLF-SSF 106 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~--~~~k~~l~IwDlpG~~~----~~~Li~~~-r~~ 106 (890)
.|+|||.||||||||+++|++.. +.++ +|.|++.. +. ......+.+||+||... ...+...+ +.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak----~kIa-~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrh- 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK----PKIA-NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRH- 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC----Cccc-cCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHH-
Confidence 79999999999999999999843 2222 23222222 11 11133799999999743 22344444 22
Q ss_pred ccccccCcEEEEEEeCCCc---CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 107 SLTAQSGFTLVLMLDLSRL---NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp---~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
+ ..++++|+|+|+++. ..+ +++..|.+++..+... ....|++||+|
T Consensus 234 -i--er~~llI~VID~s~~~~~dp~-e~~~~i~~EL~~y~~~---------------------------L~~kP~IVV~N 282 (424)
T PRK12297 234 -I--ERTRVIVHVIDMSGSEGRDPI-EDYEKINKELKLYNPR---------------------------LLERPQIVVAN 282 (424)
T ss_pred -H--hhCCEEEEEEeCCccccCChH-HHHHHHHHHHhhhchh---------------------------ccCCcEEEEEe
Confidence 1 148999999999875 343 6777777776654322 12589999999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
|+|+.. . .+.+..++..++.+++++||+++.|+++|.+.|...+..
T Consensus 283 K~DL~~-----~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 283 KMDLPE-----A----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCCcC-----C----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999731 1 234566777777889999999999999999999888754
No 170
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.57 E-value=4e-14 Score=145.06 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC------CC---CCCCCccceeEEEEEEec-----------cccceEEEEEEcCCCcc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK------ND---TPKPTLALEYIYARKSGK-----------TVMKDICHLWELGSGTS 95 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~------~~---~~kptigvdY~f~~~~g~-----------~~~k~~l~IwDlpG~~~ 95 (890)
++|+++|++|||||||+++|++. +. ...++++.+..+...... ...+..+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 11 112233333322222211 11134899999999865
Q ss_pred hhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 96 RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 96 ~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
+ ...+ +. . ..+|++++|+|.++..+. .....+.. .. ..
T Consensus 81 ~---~~~~~~~--~--~~~d~vi~VvD~~~~~~~-~~~~~~~~--~~-------------------------------~~ 119 (192)
T cd01889 81 L---IRTIIGG--A--QIIDLMLLVVDATKGIQT-QTAECLVI--GE-------------------------------IL 119 (192)
T ss_pred H---HHHHHHH--H--hhCCEEEEEEECCCCccH-HHHHHHHH--HH-------------------------------Hc
Confidence 4 2222 11 1 137999999999985543 22222210 00 12
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHH-HHH------HcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAH------VNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~-la~------~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|+++|+||+|+... +.+....+.+++ +.. ..+++++++||+++.|+++|++++.+.+
T Consensus 120 ~~~~iiv~NK~Dl~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 120 CKKLIVVLNKIDLIPE---EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CCCEEEEEECcccCCH---HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 5799999999998621 122222222222 211 1367899999999999999999998876
No 171
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.56 E-value=3e-14 Score=151.48 Aligned_cols=181 Identities=15% Similarity=0.052 Sum_probs=106.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh----hHHhhhhccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL----EVASLFSSFSLT 109 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~----~Li~~~r~~~~~ 109 (890)
+|+++|.+|||||||+++|++... ++ +..+++....... ..+..+++||+||..+.. .+.... ...++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~-~~tT~~~~~g~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~-l~~~~ 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAY-EFTTLTCVPGVLE---YKGAKIQLLDLPGIIEGAADGKGRGRQV-IAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC-CCccccceEEEEE---ECCeEEEEEECCCcccccccchhHHHHH-HHhhc
Confidence 799999999999999999998532 22 2222221111111 123479999999986432 111111 01122
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHH---------------------------------HHHhhhhhhh---hhc
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFR---------------------------------AIFESNESVR---EKR 153 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~---------------------------------e~~~~ll~~~---~~~ 153 (890)
++|++++|+|++++....+.+...++... +.+..++.++ ++.
T Consensus 77 --~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~ 154 (233)
T cd01896 77 --TADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNAD 154 (233)
T ss_pred --cCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEE
Confidence 59999999999987642233333332111 1111111111 222
Q ss_pred cccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 154 GSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 154 ~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
+.+++.++.++..|....+...+|+++|+||+|+.. . .++..++.. ..++++||+++.|++++++.|.
T Consensus 155 v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~-----~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~ 222 (233)
T cd01896 155 VLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----I-----EELDLLARQ--PNSVVISAEKGLNLDELKERIW 222 (233)
T ss_pred EEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----H-----HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHH
Confidence 223333344444444444556799999999999852 1 223345544 3589999999999999999998
Q ss_pred HHH
Q psy11649 234 HYA 236 (890)
Q Consensus 234 ~~l 236 (890)
..+
T Consensus 223 ~~L 225 (233)
T cd01896 223 DKL 225 (233)
T ss_pred HHh
Confidence 765
No 172
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.56 E-value=5e-14 Score=162.66 Aligned_cols=151 Identities=16% Similarity=0.156 Sum_probs=105.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF 106 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~ 106 (890)
..++|+++|.+|||||||+|+|++... ...|+++.++....... .+..+++|||||...+...+... ...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~---~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL---NGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE---CCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 357999999999999999999998532 33466666643322221 23468999999987655443221 111
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
.++ ++|++++|+|++++.++ +.. |+..+. ..++|+++|+||+|
T Consensus 279 ~~~--~aD~il~V~D~s~~~s~-~~~--~l~~~~--------------------------------~~~~piIlV~NK~D 321 (442)
T TIGR00450 279 AIK--QADLVIYVLDASQPLTK-DDF--LIIDLN--------------------------------KSKKPFILVLNKID 321 (442)
T ss_pred HHh--hCCEEEEEEECCCCCCh-hHH--HHHHHh--------------------------------hCCCCEEEEEECcc
Confidence 223 59999999999999886 333 554321 12579999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.. . ....++..++.+++++||++ .|++++++.+...+
T Consensus 322 l~~-----~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 322 LKI-----N------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred CCC-----c------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 852 1 12345667788899999998 68888888887766
No 173
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.56 E-value=9.1e-14 Score=134.95 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSFSL 108 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~~~ 108 (890)
++|+++|++|+|||||++++++... ...++++.++...... .....+.+|||||...+....... ....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID---IGGIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE---eCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 4799999999999999999998642 2235555453321211 123479999999976543221110 00111
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
. +++++++|+|++++.+. .....|.. ..+.|+++|+||+|+.
T Consensus 79 ~--~~~~~v~v~d~~~~~~~-~~~~~~~~-----------------------------------~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 79 E--EADLVLFVIDASRGLDE-EDLEILEL-----------------------------------PADKPIIVVLNKSDLL 120 (157)
T ss_pred h--hCCEEEEEEECCCCCCH-HHHHHHHh-----------------------------------hcCCCEEEEEEchhcC
Confidence 2 49999999999998875 33332221 1258999999999996
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.. ... .....+.+++++||+++.|++++.+.|...
T Consensus 121 ~~-----~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 121 PD-----SEL-------LSLLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred Cc-----ccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 31 111 344456789999999999999999988765
No 174
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.56 E-value=2.6e-14 Score=134.21 Aligned_cols=115 Identities=22% Similarity=0.356 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC----CCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDT----PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~----~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
||+|+|++|||||||+++|++.... +.+..+.++......... ....+++||++|+..+......+ ..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~------~~~ 73 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQFF------LKK 73 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHHH------HHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccch------hhc
Confidence 7999999999999999999986543 233333333322222111 12258999999997765544433 114
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
+|++|+|||++++.++ +.+..+++.+...... ...+|++|||||.|
T Consensus 74 ~d~~ilv~D~s~~~s~-~~~~~~~~~l~~~~~~---------------------------~~~~piilv~nK~D 119 (119)
T PF08477_consen 74 ADAVILVYDLSDPESL-EYLSQLLKWLKNIRKR---------------------------DKNIPIILVGNKSD 119 (119)
T ss_dssp SCEEEEEEECCGHHHH-HHHHHHHHHHHHHHHH---------------------------SSCSEEEEEEE-TC
T ss_pred CcEEEEEEcCCChHHH-HHHHHHHHHHHHHHcc---------------------------CCCCCEEEEEeccC
Confidence 9999999999999988 6665554444433211 12499999999998
No 175
>PRK11058 GTPase HflX; Provisional
Probab=99.56 E-value=5e-14 Score=161.85 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SSFSLT 109 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~~~~~ 109 (890)
.+|+|+|.+|||||||+|+|++... ...+..+++........ .....+.+|||+|.++. .+++..+ +.+.++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l--~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV--ADVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe--CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 5899999999999999999998532 12345555644322222 11226889999998553 3444444 212222
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|+|++++.++ +.+..|.+.+.+. ...++|+++|+||+|+..
T Consensus 276 --~ADlIL~VvDaS~~~~~-e~l~~v~~iL~el-----------------------------~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 276 --QATLLLHVVDAADVRVQ-ENIEAVNTVLEEI-----------------------------DAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred --cCCEEEEEEeCCCccHH-HHHHHHHHHHHHh-----------------------------ccCCCCEEEEEEcccCCC
Confidence 59999999999999876 5665555544332 112589999999999852
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
. .. . ... ....+.+ ++++||++|.|+++|++.|...+.
T Consensus 324 ~-----~~-~--~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 324 D-----FE-P--RID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred c-----hh-H--HHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 1 10 0 011 1123555 588999999999999999988863
No 176
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.55 E-value=1.7e-13 Score=133.24 Aligned_cols=157 Identities=19% Similarity=0.153 Sum_probs=100.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSFS 107 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~~ 107 (890)
..+|+++|.+|+|||||+++|++... ...+..... .. .......+..+.+||+||........... ....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RI--RGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eE--EEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 56899999999999999999998532 111111111 11 11111223478999999976543222111 0011
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
+. .+|++++|+|.+++.+. ....+.+.+.. .+.|+++|+||+|+
T Consensus 80 ~~--~~d~i~~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~~~iiv~nK~Dl 123 (168)
T cd04163 80 LK--DVDLVLFVVDASEPIGE--GDEFILELLKK--------------------------------SKTPVILVLNKIDL 123 (168)
T ss_pred HH--hCCEEEEEEECCCccCc--hHHHHHHHHHH--------------------------------hCCCEEEEEEchhc
Confidence 22 48999999999998331 33333332221 14799999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.. ......+....++...+ .+++++|++++.+++++.+.|.+.
T Consensus 124 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 124 VK-----DKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred cc-----cHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 52 23344455666666663 689999999999999999988764
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.55 E-value=1.1e-13 Score=158.88 Aligned_cols=186 Identities=18% Similarity=0.184 Sum_probs=113.2
Q ss_pred CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649 2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK 78 (890)
Q Consensus 2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~ 78 (890)
|.+++.+.+.+.+....... .......+|+++|.+|||||||+|+|++.. ....++++.+........
T Consensus 147 gv~~ll~~i~~~l~~~~~~~--------~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~- 217 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEE--------EEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER- 217 (429)
T ss_pred ChHHHHHHHHHhcCcccccc--------cccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-
Confidence 34566676666653322111 112346899999999999999999999853 233355554432212111
Q ss_pred cccceEEEEEEcCCCcchhhHH---hhh----hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649 79 TVMKDICHLWELGSGTSRLEVA---SLF----SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE 151 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~~Li---~~~----r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~ 151 (890)
.+..+.+|||||..+...+. ..+ ....++ .+|++|+|+|.+++.+. ... .+...+.
T Consensus 218 --~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~--~ad~~ilV~D~~~~~~~-~~~-~~~~~~~----------- 280 (429)
T TIGR03594 218 --NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIE--RADVVLLVLDATEGITE-QDL-RIAGLIL----------- 280 (429)
T ss_pred --CCcEEEEEECCCccccccchhhHHHHHHHHHHHHHH--hCCEEEEEEECCCCccH-HHH-HHHHHHH-----------
Confidence 12378999999976543221 111 111122 59999999999998775 222 2222111
Q ss_pred hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHH-HHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649 152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHSSLDPGLVKRTRD 230 (890)
Q Consensus 152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~-la~~~Ga~l~etSAK~~~nId~Lk~ 230 (890)
..++|+++|+||+|+.+ +.+........++. +....++++++|||++|.|++++++
T Consensus 281 ---------------------~~~~~iiiv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 281 ---------------------EAGKALVIVVNKWDLVK--DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred ---------------------HcCCcEEEEEECcccCC--CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHH
Confidence 12689999999999962 11222222222322 2222357899999999999999999
Q ss_pred HHHHHH
Q psy11649 231 ILNHYA 236 (890)
Q Consensus 231 ~I~~~l 236 (890)
.+....
T Consensus 338 ~i~~~~ 343 (429)
T TIGR03594 338 AIDEVY 343 (429)
T ss_pred HHHHHH
Confidence 988765
No 178
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.55 E-value=1.2e-13 Score=135.93 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=95.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH---Hhhh---h-
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV---ASLF---S- 104 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L---i~~~---r- 104 (890)
.++|+++|++|+|||||+++|++... ...++.+.+....... ..+..+.+||+||....... ...+ +
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE---YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE---ECCeeEEEEECCCCccccchhccHHHHHHHHH
Confidence 46899999999999999999998532 2223333332111111 11236889999997543110 0000 0
Q ss_pred ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649 105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK 184 (890)
Q Consensus 105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK 184 (890)
...+. ++|++++|+|.+++.+. ..+ .+...+. ..+.|+++|+||
T Consensus 79 ~~~~~--~~d~vi~v~d~~~~~~~-~~~-~~~~~~~--------------------------------~~~~~~iiv~nK 122 (174)
T cd01895 79 LKAIE--RADVVLLVIDATEGITE-QDL-RIAGLIL--------------------------------EEGKALVIVVNK 122 (174)
T ss_pred HHHHh--hcCeEEEEEeCCCCcch-hHH-HHHHHHH--------------------------------hcCCCEEEEEec
Confidence 00112 48999999999998775 222 2222111 125799999999
Q ss_pred ccCCCCCCcchhhhhHHHHHHHHHHc----CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 185 YDLFENLEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 185 ~Dl~~d~d~e~r~~i~~~lr~la~~~----Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+|+..... .........+...+ +++++++||+++.|++++++.+...
T Consensus 123 ~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 123 WDLVEKDS----KTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccCCccH----HHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 99863210 11112222333333 3689999999999999998887653
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.55 E-value=2e-13 Score=139.10 Aligned_cols=160 Identities=13% Similarity=0.185 Sum_probs=102.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc----------chhhH
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT----------SRLEV 99 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~----------~~~~L 99 (890)
.....+|+|+|++|||||||+++|+++. ..+.++.+..... .. ... ...+.||||||.. .+..+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~-~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-NF-FEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE-EE-Eec--CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 3456899999999999999999999853 3333444432111 11 111 2379999999942 33334
Q ss_pred Hhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649 100 ASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL 178 (890)
Q Consensus 100 i~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi 178 (890)
...+ +. . ...+++++|+|.+++.+. .-..+...+ . ..++|+
T Consensus 97 ~~~~~~~--~--~~~~~~~~v~d~~~~~~~--~~~~i~~~l----~----------------------------~~~~~~ 138 (196)
T PRK00454 97 IEEYLRT--R--ENLKGVVLLIDSRHPLKE--LDLQMIEWL----K----------------------------EYGIPV 138 (196)
T ss_pred HHHHHHh--C--ccceEEEEEEecCCCCCH--HHHHHHHHH----H----------------------------HcCCcE
Confidence 4444 21 0 125688899998887553 111111111 1 126899
Q ss_pred EEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|+||+|+.. ..+++...+.+.+........++++||+++.|++++.++|...+
T Consensus 139 iiv~nK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 139 LIVLTKADKLK---KGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEEECcccCC---HHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 99999999862 22333334445555544467899999999999999999998775
No 180
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.54 E-value=1.2e-13 Score=130.20 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=102.0
Q ss_pred EEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEE
Q psy11649 40 LIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTL 116 (890)
Q Consensus 40 LVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~I 116 (890)
|+|.+|+|||||++++++... ...++. .++...... .......+.+||++|...+......+ + .+++++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~-~~~~~~~~~l~D~~g~~~~~~~~~~~----~--~~~~~~ 72 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIE-VDGKKVKLQIWDTAGQERFRSLRRLY----Y--RGADGI 72 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEE-ECCEEEEEEEEecCChHHHHhHHHHH----h--cCCCEE
Confidence 589999999999999998533 333444 554322222 11123379999999987766554444 1 148999
Q ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchh
Q psy11649 117 VLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKK 196 (890)
Q Consensus 117 IIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r 196 (890)
++|+|++++.++ +.+..|....... ....++|+++|+||+|+....+ .
T Consensus 73 i~v~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~~~ivv~nk~D~~~~~~---~ 120 (157)
T cd00882 73 ILVYDVTDRESF-ENVKEWLLLILIN----------------------------KEGENIPIILVGNKIDLPEERV---V 120 (157)
T ss_pred EEEEECcCHHHH-HHHHHHHHHHHHh----------------------------hccCCCcEEEEEeccccccccc---h
Confidence 999999998887 5555552111111 1234689999999999863211 1
Q ss_pred hhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 197 RIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 197 ~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
. ........+...+.+++++|++++.|++++.+.|.
T Consensus 121 ~-~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 121 S-EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred H-HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 1 01124445556678999999999999999988764
No 181
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.54 E-value=1.7e-13 Score=133.34 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=93.8
Q ss_pred EEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-----HHhhhhcccccc
Q psy11649 39 LLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-----VASLFSSFSLTA 110 (890)
Q Consensus 39 vLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-----Li~~~r~~~~~~ 110 (890)
+++|.+|||||||+++|++.. ....+.++.+..+..... .+..+.+|||||...+.. +.... ...++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~DtpG~~~~~~~~~~~~~~~~-~~~~~- 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW---GGREFILIDTGGIEPDDEGISKEIREQA-ELAIE- 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE---CCeEEEEEECCCCCCchhHHHHHHHHHH-HHHHH-
Confidence 589999999999999999853 122244444432222221 223799999999887544 11111 01122
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++++|+|.+++.+. ... ...+.++ ..++|+++|+||+|+..
T Consensus 76 -~~d~ii~v~d~~~~~~~-~~~-~~~~~~~--------------------------------~~~~piiiv~nK~D~~~- 119 (157)
T cd01894 76 -EADVILFVVDGREGLTP-ADE-EIAKYLR--------------------------------KSKKPVILVVNKVDNIK- 119 (157)
T ss_pred -hCCEEEEEEeccccCCc-cHH-HHHHHHH--------------------------------hcCCCEEEEEECcccCC-
Confidence 48999999999886553 121 1112111 12489999999999852
Q ss_pred CCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
... . .......+. .++++|++++.|++++++.|...
T Consensus 120 ----~~~-~----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 120 ----EED-E----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ----hHH-H----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 111 1 222334565 78999999999999999988754
No 182
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.54 E-value=7.6e-14 Score=161.66 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=104.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF 106 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~ 106 (890)
..++|+++|.+|||||||+|+|++.. ....++.+.++....... .+..+.+|||||...+...+... ...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~---~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL---DGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE---CCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 34799999999999999999999854 233466666643322221 23378999999987654443321 111
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
.+. ++|++++|+|.+++.++ +....|.+ ..+.|+++|+||+|
T Consensus 291 ~~~--~aD~il~VvD~s~~~s~-~~~~~l~~-----------------------------------~~~~piiiV~NK~D 332 (449)
T PRK05291 291 AIE--EADLVLLVLDASEPLTE-EDDEILEE-----------------------------------LKDKPVIVVLNKAD 332 (449)
T ss_pred HHH--hCCEEEEEecCCCCCCh-hHHHHHHh-----------------------------------cCCCCcEEEEEhhh
Confidence 122 59999999999999886 34333332 11579999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.. .... . ...+..++++||++|.|++++++.|...+
T Consensus 333 L~~-----~~~~-~-------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 333 LTG-----EIDL-E-------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ccc-----cchh-h-------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 952 1111 0 33467799999999999999999998876
No 183
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=1.1e-13 Score=160.53 Aligned_cols=170 Identities=16% Similarity=0.122 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFS 107 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~ 107 (890)
..|+|||.||||||||+|+|++... +| |..+++....... ..+..+.|||+||.... ..+...+ +.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIady-pfTTl~P~lGvv~---~~~~~f~laDtPGliegas~g~gLg~~fLrh-- 233 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADY-PFTTLVPNLGVVQ---AGDTRFTVADVPGLIPGASEGKGLGLDFLRH-- 233 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcccccc-CcccccceEEEEE---ECCeEEEEEECCCCccccchhhHHHHHHHHH--
Confidence 5799999999999999999998421 22 3333332211111 12237999999996431 2233333 21
Q ss_pred cccccCcEEEEEEeCCCcC----chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 108 LTAQSGFTLVLMLDLSRLN----SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~----S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
+ ..++++|+|+|+++.+ .+ +.+..|..++..+...+. .+.........|++||+|
T Consensus 234 i--eradvLv~VVD~s~~e~~rdp~-~d~~~i~~EL~~y~~~l~------------------~~~~~~~l~~kP~IVVlN 292 (500)
T PRK12296 234 I--ERCAVLVHVVDCATLEPGRDPL-SDIDALEAELAAYAPALD------------------GDLGLGDLAERPRLVVLN 292 (500)
T ss_pred H--HhcCEEEEEECCcccccccCch-hhHHHHHHHHHHhhhccc------------------ccchhhhhcCCCEEEEEE
Confidence 1 2489999999998743 22 455556655554432100 000001123689999999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
|+|+.+ .+. ..+.++......+++++++||+++.|+++|+..|...+-.
T Consensus 293 KiDL~d-----a~e-l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 293 KIDVPD-----ARE-LAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred Cccchh-----hHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999852 222 2223333334458899999999999999999999888743
No 184
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.51 E-value=3.7e-13 Score=136.44 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=94.7
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccc--eeEEEEEEeccccceEEEEEEcCCCc----------chh
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLAL--EYIYARKSGKTVMKDICHLWELGSGT----------SRL 97 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigv--dY~f~~~~g~~~~k~~l~IwDlpG~~----------~~~ 97 (890)
.....+|+|+|.+|||||||+|+|++.. ..+.++.+. +..+... . ..+.+|||||.. .+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~--~~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----N--DGFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----C--CcEEEEeCCCCccccCChhHHHHHH
Confidence 3457899999999999999999999863 222333332 2111111 1 158999999952 233
Q ss_pred hHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 98 EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 98 ~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
.+...+ +. .- .++++++|+|.+++-+. ... .+.+.+. ..++
T Consensus 89 ~~~~~~l~~-~~---~~~~ii~vvd~~~~~~~-~~~-~~~~~~~--------------------------------~~~~ 130 (179)
T TIGR03598 89 KLIEEYLEK-RE---NLKGVVLLMDIRHPLKE-LDL-EMLEWLR--------------------------------ERGI 130 (179)
T ss_pred HHHHHHHHh-Ch---hhcEEEEEecCCCCCCH-HHH-HHHHHHH--------------------------------HcCC
Confidence 333334 21 01 26799999999886553 222 2222211 1268
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHH
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVK 226 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId 226 (890)
|+++|+||+|+.. .+......++++..+...+ ..++++||++|.|++
T Consensus 131 pviiv~nK~D~~~---~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 131 PVLIVLTKADKLK---KSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CEEEEEECcccCC---HHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 9999999999863 2234445566666666664 479999999999974
No 185
>PRK00089 era GTPase Era; Reviewed
Probab=99.49 E-value=1.1e-12 Score=143.29 Aligned_cols=159 Identities=21% Similarity=0.213 Sum_probs=103.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEec-cccceEEEEEEcCCCcchhhHHhhh----hc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGK-TVMKDICHLWELGSGTSRLEVASLF----SS 105 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~~~~~~Li~~~----r~ 105 (890)
+.-.|+|+|.+|||||||+|+|++... ...+..+... ..+. ...+.++.+|||||........... ..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~----i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR----IRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc----EEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 345699999999999999999998632 2333333221 1111 1122479999999975532211111 01
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
..+. ++|++++|+|+++..+ .......+.+. ..+.|+++|+||+
T Consensus 80 ~~~~--~~D~il~vvd~~~~~~--~~~~~i~~~l~--------------------------------~~~~pvilVlNKi 123 (292)
T PRK00089 80 SSLK--DVDLVLFVVDADEKIG--PGDEFILEKLK--------------------------------KVKTPVILVLNKI 123 (292)
T ss_pred HHHh--cCCEEEEEEeCCCCCC--hhHHHHHHHHh--------------------------------hcCCCEEEEEECC
Confidence 1122 5999999999998433 12222222211 1258999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
|+.. .+......+..++..++ ..++++||+++.|++++.+.|...+.
T Consensus 124 Dl~~-----~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 124 DLVK-----DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred cCCC-----CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 9952 23334556666766655 67999999999999999999988864
No 186
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=1.7e-12 Score=147.73 Aligned_cols=161 Identities=15% Similarity=0.092 Sum_probs=107.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh----hHHhhh-hccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL----EVASLF-SSFSLT 109 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~----~Li~~~-r~~~~~ 109 (890)
.|+|||.||||||||+|+|++... ..+|..+..-.+.... ......+.++||||...-. .+...+ +. +.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~--~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~--i~ 236 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVR--VDDERSFVVADIPGLIEGASEGAGLGIRFLKH--LE 236 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEE--eCCCcEEEEEeCCCccccccchhhHHHHHHHH--HH
Confidence 699999999999999999998421 2224333332221111 1112369999999975421 122222 21 12
Q ss_pred cccCcEEEEEEeCC---CcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 110 AQSGFTLVLMLDLS---RLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 110 ~~~ad~IIIV~DlS---np~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
.++++++|+|++ +...+ +++..|.+++......+ ...|++||+||+|
T Consensus 237 --radvlL~VVD~s~~~~~d~~-e~~~~l~~eL~~~~~~L---------------------------~~kP~IlVlNKiD 286 (390)
T PRK12298 237 --RCRVLLHLIDIAPIDGSDPV-ENARIIINELEKYSPKL---------------------------AEKPRWLVFNKID 286 (390)
T ss_pred --hCCEEEEEeccCcccccChH-HHHHHHHHHHHhhhhhh---------------------------cCCCEEEEEeCCc
Confidence 489999999998 33444 67777777766543321 2479999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+.. +....+.++.++..++ ..++++||+++.|++++.+.|...+.
T Consensus 287 l~~------~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 287 LLD------EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred cCC------hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 852 2223445566666655 46899999999999999999988873
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=1.3e-12 Score=150.57 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=102.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH---Hhhh---h
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV---ASLF---S 104 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L---i~~~---r 104 (890)
..++|+++|.+|||||||+|+|++... ...++++.+....... ..+..+.+|||||..+...+ ...+ +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~---~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFE---RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEE---ECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 469999999999999999999998532 3345555443211111 12336899999997532211 1111 0
Q ss_pred -ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 105 -SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 105 -~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
...++ .+|++|+|+|++++.+. ... .+...+. ..+.|+++|+|
T Consensus 249 ~~~~~~--~ad~~ilViD~~~~~~~-~~~-~i~~~~~--------------------------------~~~~~~ivv~N 292 (435)
T PRK00093 249 TLKAIE--RADVVLLVIDATEGITE-QDL-RIAGLAL--------------------------------EAGRALVIVVN 292 (435)
T ss_pred HHHHHH--HCCEEEEEEeCCCCCCH-HHH-HHHHHHH--------------------------------HcCCcEEEEEE
Confidence 01122 48999999999998775 222 2222111 12689999999
Q ss_pred cccCCCCCCcchhhhhHHHHH-HHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 184 KYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr-~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+|+.. .+........++ .+.....++++++||+++.|++++.+.+....
T Consensus 293 K~Dl~~---~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 293 KWDLVD---EKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CccCCC---HHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999862 122222333332 22223358899999999999999999887664
No 188
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.46 E-value=1.2e-12 Score=156.38 Aligned_cols=155 Identities=15% Similarity=0.054 Sum_probs=105.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC---------CCCCC------ccceeEEEEEEe--c--cccceEEEEEEcCCCcc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND---------TPKPT------LALEYIYARKSG--K--TVMKDICHLWELGSGTS 95 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~---------~~kpt------igvdY~f~~~~g--~--~~~k~~l~IwDlpG~~~ 95 (890)
-.+|+++|..++|||||+++|+...+ .+..+ .|+.+.-..... . ......+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 35899999999999999999987421 11111 133322111111 1 12224899999999998
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP 175 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~ 175 (890)
|...+..+ ++ .+|++|+|+|+++..+. .++..|...+. .+
T Consensus 83 F~~~v~~~----l~--~aD~aILVvDat~g~~~-qt~~~~~~~~~---------------------------------~~ 122 (595)
T TIGR01393 83 FSYEVSRS----LA--ACEGALLLVDAAQGIEA-QTLANVYLALE---------------------------------ND 122 (595)
T ss_pred HHHHHHHH----HH--hCCEEEEEecCCCCCCH-hHHHHHHHHHH---------------------------------cC
Confidence 87766666 22 49999999999997765 45555543211 15
Q ss_pred CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+|+++|+||+|+... . ......+++..+|+ .++++||++|.|++++++.|...+
T Consensus 123 ipiIiViNKiDl~~~----~---~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 123 LEIIPVINKIDLPSA----D---PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred CCEEEEEECcCCCcc----C---HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 899999999998421 1 12233455555665 389999999999999999998775
No 189
>KOG0075|consensus
Probab=99.46 E-value=1.7e-13 Score=132.60 Aligned_cols=158 Identities=20% Similarity=0.185 Sum_probs=109.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQ 111 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~ 111 (890)
++.+.++|-.++|||||+|....+ .+...||+|.. ..+.+ .+...+.+||+||+.+|+.+++.| |
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~t---kgnvtiklwD~gGq~rfrsmWerycR------- 87 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVT---KGNVTIKLWDLGGQPRFRSMWERYCR------- 87 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEec---cCceEEEEEecCCCccHHHHHHHHhh-------
Confidence 567999999999999999988764 34556888844 21222 122379999999999999999999 5
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+.+++++|+|.++|+.+ ...++.+..++... .-.++|++|.|||.|+-..+
T Consensus 88 ~v~aivY~VDaad~~k~--------~~sr~EL~~LL~k~---------------------~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKL--------EASRSELHDLLDKP---------------------SLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred cCcEEEEEeecCCcccc--------hhhHHHHHHHhcch---------------------hhcCCcEEEecccccCcccc
Confidence 49999999999998876 22333333333211 12379999999999986544
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+ ....+.+..-.-...-.+..|.+|+|+..|++.+.++|...
T Consensus 139 ~--~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 139 S--KIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred c--HHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 3 22222211111111123568899999999999999998765
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.46 E-value=9.6e-13 Score=156.88 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
.|+++|..++|||||+++|++.. +++.+++++++.|...... +..+.+||+||++.|....... + .
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~---~~~v~~iDtPGhe~f~~~~~~g----~--~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP---DYRLGFIDVPGHEKFISNAIAG----G--G 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC---CEEEEEEECCCHHHHHHHHHhh----h--c
Confidence 58999999999999999999732 3445677777665443322 2479999999998775444333 1 2
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc-EEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d 190 (890)
++|++++|+|+++.... .....+..+ ...++| ++||+||+|+..
T Consensus 73 ~aD~aILVVDa~~G~~~--qT~ehl~il--------------------------------~~lgi~~iIVVlNK~Dlv~- 117 (581)
T TIGR00475 73 GIDAALLVVDADEGVMT--QTGEHLAVL--------------------------------DLLGIPHTIVVITKADRVN- 117 (581)
T ss_pred cCCEEEEEEECCCCCcH--HHHHHHHHH--------------------------------HHcCCCeEEEEEECCCCCC-
Confidence 59999999999984321 111222111 113678 999999999962
Q ss_pred CCcchhhhhHHHHHHHHHHc----CCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 191 LEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~----Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+.......+++.++..+ +++++++||++|.|++++++.|...+-
T Consensus 118 --~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 118 --EEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 122233455677776665 478999999999999999999987763
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.45 E-value=2.3e-12 Score=157.29 Aligned_cols=188 Identities=15% Similarity=0.073 Sum_probs=113.8
Q ss_pred CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649 2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK 78 (890)
Q Consensus 2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~ 78 (890)
|.++|.+.+++.+....... . ........+|+++|.+|||||||+|+|++.. ....++++.+........
T Consensus 423 GI~eLl~~i~~~l~~~~~~~-~-----a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~- 495 (712)
T PRK09518 423 GVGDLLDEALDSLKVAEKTS-G-----FLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI- 495 (712)
T ss_pred CchHHHHHHHHhcccccccc-c-----ccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-
Confidence 45667777777664321110 0 0112345899999999999999999999864 233466666643211111
Q ss_pred cccceEEEEEEcCCCcch-h-----hHHhhhh-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649 79 TVMKDICHLWELGSGTSR-L-----EVASLFS-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE 151 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~-~-----~Li~~~r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~ 151 (890)
.+..+.+|||||..+- . ......+ ...++ ++|++|+|+|.++..+. ..+. +...+.
T Consensus 496 --~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~--~advvilViDat~~~s~-~~~~-i~~~~~----------- 558 (712)
T PRK09518 496 --DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIE--RSELALFLFDASQPISE-QDLK-VMSMAV----------- 558 (712)
T ss_pred --CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhh--cCCEEEEEEECCCCCCH-HHHH-HHHHHH-----------
Confidence 2236789999996421 0 1111111 11122 59999999999998886 3333 222221
Q ss_pred hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHH-HHcCCeEEEEeccCCCCHHHHHH
Q psy11649 152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNGASLLFHSSLDPGLVKRTRD 230 (890)
Q Consensus 152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-~~~Ga~l~etSAK~~~nId~Lk~ 230 (890)
..++|++||+||+|+.. .+.++.....++... ....++++++||++|.|++++++
T Consensus 559 ---------------------~~~~piIiV~NK~DL~~---~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 559 ---------------------DAGRALVLVFNKWDLMD---EFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred ---------------------HcCCCEEEEEEchhcCC---hhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHH
Confidence 12689999999999963 112222222222111 11246789999999999999999
Q ss_pred HHHHHHh
Q psy11649 231 ILNHYAF 237 (890)
Q Consensus 231 ~I~~~lf 237 (890)
.+.....
T Consensus 615 ~i~~~~~ 621 (712)
T PRK09518 615 AMQEALE 621 (712)
T ss_pred HHHHHHH
Confidence 9988763
No 192
>KOG4423|consensus
Probab=99.44 E-value=8.3e-15 Score=146.63 Aligned_cols=165 Identities=16% Similarity=0.234 Sum_probs=127.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccc--eEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMK--DICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k--~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
.-++++|+|+.++||||++.++... +..|+.|+|++|.. +....+.+ .++++||++||++|..+..+| |+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfal--kVl~wdd~t~vRlqLwdIagQerfg~mtrVy----yk 97 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFAL--KVLQWDDKTIVRLQLWDIAGQERFGNMTRVY----YK 97 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHH--HHhccChHHHHHHHHhcchhhhhhcceEEEE----ec
Confidence 4589999999999999999999874 55789999999653 33222222 289999999999999999888 33
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
.+.+.++|||+|+.-+| +....|.+++..- ..+.+..++|+++..||||...
T Consensus 98 --ea~~~~iVfdvt~s~tf-e~~skwkqdldsk-------------------------~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 98 --EAHGAFIVFDVTRSLTF-EPVSKWKQDLDSK-------------------------LQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred --CCcceEEEEEccccccc-cHHHHHHHhccCc-------------------------ccCCCCCcchheeccchhccCh
Confidence 59999999999999998 8889999854321 2345567899999999999842
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHH
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+ ....-.....++++.+|+. .++||+|.+.|+++..+.+...+
T Consensus 150 ~----a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 150 S----AKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred H----hhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHH
Confidence 1 1111235677888889864 99999999999999866665554
No 193
>KOG0096|consensus
Probab=99.43 E-value=2.5e-13 Score=136.65 Aligned_cols=162 Identities=16% Similarity=0.169 Sum_probs=126.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++++++|+.|+|||+++++.+.+ +.++.+|+|++..- .....+.+..++.+|||+|++.+..+...| | +
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~p-l~f~tn~g~irf~~wdtagqEk~gglrdgy----y--I 81 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHP-LLFDTNRGQIRFNVWDTAGQEKKGGLRDGY----Y--I 81 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEee-eeeecccCcEEEEeeecccceeeccccccc----E--E
Confidence 4689999999999999999998876 45789999988432 222333334589999999999988887766 1 2
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+..+.||+||++..-++ .++.+|...+.+.+++ +||+++|||.|..
T Consensus 82 ~~qcAiimFdVtsr~t~-~n~~rwhrd~~rv~~N------------------------------iPiv~cGNKvDi~--- 127 (216)
T KOG0096|consen 82 QGQCAIIMFDVTSRFTY-KNVPRWHRDLVRVREN------------------------------IPIVLCGNKVDIK--- 127 (216)
T ss_pred ecceeEEEeeeeehhhh-hcchHHHHHHHHHhcC------------------------------CCeeeeccceecc---
Confidence 48899999999999888 8999999988876654 8999999999984
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 240 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~ 240 (890)
.+++ ....-.+-+..++.++++||+++.|.++-+-++...+-+.+
T Consensus 128 ---~r~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 128 ---ARKV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDP 172 (216)
T ss_pred ---cccc-ccccceeeecccceeEEeecccccccccchHHHhhhhcCCC
Confidence 2321 11122333455788999999999999999999988876544
No 194
>KOG3883|consensus
Probab=99.42 E-value=3.9e-12 Score=124.03 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=124.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhhhcccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLFSSFSL 108 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~ 108 (890)
+..||+++|-.+||||+++.+|+.+. ..+.||+..-|.-...++.. ....+.++||.|.... .++-..| +
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg-arE~l~lyDTaGlq~~~~eLprhy----~ 82 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG-AREQLRLYDTAGLQGGQQELPRHY----F 82 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC-hhheEEEeecccccCchhhhhHhH----h
Confidence 46799999999999999999998742 35567777544322222222 2238999999997665 5555555 1
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
.-+|++++|||..+++|| +.++....+|.++-+ .-.+||+|.+||+|+.
T Consensus 83 --q~aDafVLVYs~~d~eSf-~rv~llKk~Idk~Kd----------------------------KKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 83 --QFADAFVLVYSPMDPESF-QRVELLKKEIDKHKD----------------------------KKEVPIVVLANKRDRA 131 (198)
T ss_pred --ccCceEEEEecCCCHHHH-HHHHHHHHHHhhccc----------------------------cccccEEEEechhhcc
Confidence 138999999999999998 655555444443222 2359999999999995
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+.+.+....+..||++-.+.+++++|++...+-+.+-++.+.++.
T Consensus 132 -----~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 132 -----EPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred -----cchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence 578888889999999999999999999999999999999988854
No 195
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.41 E-value=6.2e-12 Score=122.79 Aligned_cols=153 Identities=15% Similarity=0.154 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc----------hhhHHhhh-
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS----------RLEVASLF- 103 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----------~~~Li~~~- 103 (890)
.|+++|.+|+|||||+++++++ .....++.+.... ....... ..+.+||+||... +..+...+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQL--INFFNVN--DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCccee--EEEEEcc--CeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 3899999999999999999943 3333344443211 1111111 1789999999432 33333334
Q ss_pred hccccccccCcEEEEEEeCCCcCch-HHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSL-WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~-~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
+.. .+.+++++++|.++..+. ...+..|+. ..+.|+++|+
T Consensus 77 ~~~----~~~~~~~~v~d~~~~~~~~~~~~~~~l~-----------------------------------~~~~~vi~v~ 117 (170)
T cd01876 77 ENR----ENLKGVVLLIDSRHGPTEIDLEMLDWLE-----------------------------------ELGIPFLVVL 117 (170)
T ss_pred HhC----hhhhEEEEEEEcCcCCCHhHHHHHHHHH-----------------------------------HcCCCEEEEE
Confidence 210 125789999999876432 112223332 1147999999
Q ss_pred ecccCCCCCCcchhhhhHHHHHHHHH--HcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 183 GKYDLFENLEPNKKRIAVQCLRYLAH--VNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 183 NK~Dl~~d~d~e~r~~i~~~lr~la~--~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
||+|+.. .+++.......+.... ....+++++||+++.+++++.+.|...
T Consensus 118 nK~D~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 118 TKADKLK---KSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EchhcCC---hHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 9999852 2233333333333333 334679999999999999999998765
No 196
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.41 E-value=3.9e-12 Score=125.07 Aligned_cols=135 Identities=20% Similarity=0.234 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-----hhhHHhhhhcccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-----RLEVASLFSSFSLTA 110 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-----~~~Li~~~r~~~~~~ 110 (890)
+||+|||..|||||||+++|.+....|+.|..++|. -.++||||.+- +..++...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~-------------~~~IDTPGEyiE~~~~y~aLi~ta------- 61 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYY-------------DNTIDTPGEYIENPRFYHALIVTA------- 61 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccceeEec-------------ccEEECChhheeCHHHHHHHHHHH-------
Confidence 489999999999999999999988888888888752 25699999652 12222222
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
.++|+|++|.|.+++.+.. | -.+...+..|+|=|+||+|+..+
T Consensus 62 ~dad~V~ll~dat~~~~~~------------------------------------p-P~fa~~f~~pvIGVITK~Dl~~~ 104 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVF------------------------------------P-PGFASMFNKPVIGVITKIDLPSD 104 (143)
T ss_pred hhCCEEEEEecCCCCCccC------------------------------------C-chhhcccCCCEEEEEECccCccc
Confidence 2499999999999987640 0 01123356899999999999521
Q ss_pred CCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~ 233 (890)
....+.++++-+.-|+. +|++|+.+|+|+++|+++|.
T Consensus 105 ------~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 105 ------DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ------hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 11233456666666875 89999999999999999985
No 197
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.41 E-value=4e-12 Score=132.26 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=90.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCccceeEEEEEEec-cccceEEEEEEcCCCcchhhHHhhhhccccccccC-
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTP-KPTLALEYIYARKSGK-TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG- 113 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~-kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a- 113 (890)
+|+++|++|||||||+++|+++.... .+++...+. ..... ......++|||+||+.++......+ ++ ++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~--~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~----~~--~~~ 73 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVA--TFILNSEGKGKKFRLVDVPGHPKLRDKLLET----LK--NSA 73 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecce--EEEeecCCCCceEEEEECCCCHHHHHHHHHH----Hh--ccC
Confidence 69999999999999999999863311 122221111 11111 0122379999999999887766655 22 36
Q ss_pred cEEEEEEeCCCc-CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSnp-~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+++|+|+|.++. .++ .....|+..+..... ....++|++||+||+|+.....
T Consensus 74 ~~vV~VvD~~~~~~~~-~~~~~~l~~il~~~~--------------------------~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 74 KGIVFVVDSATFQKNL-KDVAEFLYDILTDLE--------------------------KVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred CEEEEEEECccchhHH-HHHHHHHHHHHHHHh--------------------------hccCCCCEEEEecchhhcccCC
Confidence 899999999997 555 444444433322111 1113689999999999875333
Q ss_pred cc-hhhhhHHHHHHHHHHcCCeEEEEec
Q psy11649 193 PN-KKRIAVQCLRYLAHVNGASLLFHSS 219 (890)
Q Consensus 193 ~e-~r~~i~~~lr~la~~~Ga~l~etSA 219 (890)
.+ -++....++..+.......+..+++
T Consensus 127 ~~~i~~~le~ei~~~~~~r~~~l~~~~~ 154 (203)
T cd04105 127 AKKIKEQLEKELNTLRESRSKSLSSLDG 154 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 22 2444555565566555554444444
No 198
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.40 E-value=5.1e-12 Score=131.26 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-----CCCC--CccceeEEEEEE---------------------------e-ccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND-----TPKP--TLALEYIYARKS---------------------------G-KTV 80 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~-----~~kp--tigvdY~f~~~~---------------------------g-~~~ 80 (890)
.+|+++|..++|||||+..+++... .... ++.+.|...... + ...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3689999999999999999986411 1111 111111110000 0 000
Q ss_pred cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649 81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 160 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~ 160 (890)
...++.+|||||+..+....... . .++|++++|+|++++.........| ..+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~----~--~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~------------------- 134 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSG----A--AVMDGALLLIAANEPCPQPQTSEHL-AALEI------------------- 134 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHh----h--hcCCEEEEEEECCCCCCCcchHHHH-HHHHH-------------------
Confidence 01479999999986653322222 1 1489999999999742110112211 11110
Q ss_pred ccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 161 TADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 161 ~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+ .|++||+||+|+.. .+......+.+++++..+ +++++++||+++.|+++++++|...+
T Consensus 135 -------------~~~~~iiivvNK~Dl~~---~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 135 -------------MGLKHIIIVQNKIDLVK---EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred -------------cCCCcEEEEEEchhccC---HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 02 37999999999852 112222234555555543 67899999999999999999998775
No 199
>COG1159 Era GTPase [General function prediction only]
Probab=99.40 E-value=5.7e-12 Score=135.83 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=108.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEecc-ccceEEEEEEcCCCcchhh-----HHhhh
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKT-VMKDICHLWELGSGTSRLE-----VASLF 103 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~-~~k~~l~IwDlpG~~~~~~-----Li~~~ 103 (890)
.+.--|++||.||||||||+|+++|.. -+.+|.++.. +..|.. .++.++-+.||||..+-.. +....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~----~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN----RIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh----heeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 344569999999999999999999964 3555666644 333422 2234899999999754322 22222
Q ss_pred hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
..++. ++|++++|+|.+..+.- ..+..++.++. ...|++++.|
T Consensus 80 -~~sl~--dvDlilfvvd~~~~~~~--~d~~il~~lk~--------------------------------~~~pvil~iN 122 (298)
T COG1159 80 -RSALK--DVDLILFVVDADEGWGP--GDEFILEQLKK--------------------------------TKTPVILVVN 122 (298)
T ss_pred -HHHhc--cCcEEEEEEeccccCCc--cHHHHHHHHhh--------------------------------cCCCeEEEEE
Confidence 12234 79999999999997663 33333333222 2579999999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhccCc
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFSSHL 241 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~~~~ 241 (890)
|+|... ...........+..... ..++++||+++.|++.|.+.+...+-..+.
T Consensus 123 KID~~~-----~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 123 KIDKVK-----PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred ccccCC-----cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 999863 12112233333333333 359999999999999999999998855443
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.40 E-value=6e-12 Score=120.51 Aligned_cols=155 Identities=18% Similarity=0.163 Sum_probs=93.8
Q ss_pred EEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhh----hhcccccccc
Q psy11649 40 LIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASL----FSSFSLTAQS 112 (890)
Q Consensus 40 LVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~----~r~~~~~~~~ 112 (890)
|+|.+|||||||++++++... ...++.+.+.. ...........+.+||+||.......... ... .+. +
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~-~~~--~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPV--EYVWELGPLGPVVLIDTPGIDEAGGLGREREELARR-VLE--R 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCe--EEEEEecCCCcEEEEECCCCCccccchhhHHHHHHH-HHH--h
Confidence 589999999999999998522 11222222211 11111111237999999998665322221 100 011 4
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++++|+|.+++.+. .... |.... ...++|+++|+||+|+.....
T Consensus 76 ~d~il~v~~~~~~~~~-~~~~-~~~~~--------------------------------~~~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 76 ADLILFVVDADLRADE-EEEK-LLELL--------------------------------RERGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred CCEEEEEEeCCCCCCH-HHHH-HHHHH--------------------------------HhcCCeEEEEEEccccCChhh
Confidence 8999999999998886 2222 22211 113689999999999863211
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
................+++++++||+++.|++++++.+.+.
T Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 122 --EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred --HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 11111111222333446889999999999999999988765
No 201
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.39 E-value=9.8e-12 Score=127.26 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC--------------------CCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP--------------------KPTLALEYIYARKSGKTVMKDICHLWELGSGT 94 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~--------------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~ 94 (890)
..+|+++|..++|||||+.+|+...... ...++.+..+.... .......+.++|+||+.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~-~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE-KNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE-BTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc-ccccccceeeccccccc
Confidence 4689999999999999999998632110 11222332222222 11233489999999997
Q ss_pred chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
.|....... .. .+|++|+|+|..+.-.. .....+..+. ..
T Consensus 82 ~f~~~~~~~----~~--~~D~ailvVda~~g~~~--~~~~~l~~~~--------------------------------~~ 121 (188)
T PF00009_consen 82 DFIKEMIRG----LR--QADIAILVVDANDGIQP--QTEEHLKILR--------------------------------EL 121 (188)
T ss_dssp HHHHHHHHH----HT--TSSEEEEEEETTTBSTH--HHHHHHHHHH--------------------------------HT
T ss_pred ceeecccce----ec--ccccceeeeeccccccc--cccccccccc--------------------------------cc
Confidence 664433333 11 49999999999986542 2222222221 23
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC------CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG------ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G------a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|++||.||+|+.. .+-.+...+....+.+.++ ++++++||++|.|+++|.+.|.+.+
T Consensus 122 ~~p~ivvlNK~D~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 122 GIPIIVVLNKMDLIE---KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp T-SEEEEEETCTSSH---HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccceEEeeeeccchh---hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 689999999999961 1122233333335555543 4699999999999999999998875
No 202
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.38 E-value=6.6e-12 Score=151.84 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=103.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEE-eccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKS-GKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~-g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
..+...|+|+|..++|||||+++|++... ...++++.+....... ........+.+|||||++.|..++..+ +
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg----~ 316 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRG----A 316 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHH----H
Confidence 44567899999999999999999987532 1223333322211222 111123489999999999888777655 1
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
. .+|++|+|+|+++.... ...+.|.. ....++|++||+||+|+.
T Consensus 317 ~--~aDiaILVVDA~dGv~~-QT~E~I~~---------------------------------~k~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 317 N--VTDIAILIIAADDGVKP-QTIEAINY---------------------------------IQAANVPIIVAINKIDKA 360 (742)
T ss_pred H--HCCEEEEEEECcCCCCh-hhHHHHHH---------------------------------HHhcCceEEEEEECCCcc
Confidence 1 49999999999885332 22222211 111368999999999985
Q ss_pred CCCCcchhhhhHHHHHH---HHHHcC--CeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 189 ENLEPNKKRIAVQCLRY---LAHVNG--ASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~---la~~~G--a~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.. ....+.+.+.. ++..+| ++++++||++|.|+++|++.|..+
T Consensus 361 ~~----~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 361 NA----NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred cc----CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 21 11111222222 233444 689999999999999999888765
No 203
>KOG0070|consensus
Probab=99.38 E-value=2.4e-12 Score=129.81 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=112.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
-.+.+|+++|-.|+||||++++|.-+ .....||+|.. ....... ...+++||.+|+++++.++..| +.
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfn--VE~v~yk---n~~f~vWDvGGq~k~R~lW~~Y----~~-- 83 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFN--VETVEYK---NISFTVWDVGGQEKLRPLWKHY----FQ-- 83 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccCCCccccc--eeEEEEc---ceEEEEEecCCCcccccchhhh----cc--
Confidence 35789999999999999999999765 34668999843 2233322 3379999999999999999999 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+.+++|+|+|.++.+++ .+.++.+..++. ++ ..-++|+++.+||.|+...+
T Consensus 84 ~t~~lIfVvDS~Dr~Ri--------~eak~eL~~~l~----------------~~-----~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDRERI--------EEAKEELHRMLA----------------EP-----ELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred CCcEEEEEEeCCcHHHH--------HHHHHHHHHHHc----------------Cc-----ccCCceEEEEechhhccccC
Confidence 58999999999999887 223333322221 11 12368999999999986544
Q ss_pred CcchhhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+..+ +.+. +..++. ..-.+..|+|.+|.|+.+-.+++...+
T Consensus 135 s~~e---i~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 135 SAAE---ITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred CHHH---HHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHHHHH
Confidence 3211 1111 111111 233588899999999999999998776
No 204
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.38 E-value=1.1e-11 Score=140.11 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=118.1
Q ss_pred CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649 2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK 78 (890)
Q Consensus 2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~ 78 (890)
|.++|.|.+++.+. ........+ .....+|+|||.||||||||+|+|++.+ -...++++.|-......
T Consensus 152 Gi~dLld~v~~~l~-~~e~~~~~~------~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e-- 222 (444)
T COG1160 152 GIGDLLDAVLELLP-PDEEEEEEE------ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE-- 222 (444)
T ss_pred CHHHHHHHHHhhcC-Ccccccccc------cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE--
Confidence 56788899888864 111111110 1346899999999999999999999963 24446666663221111
Q ss_pred cccceEEEEEEcCCCcchhhHHh---hh----hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649 79 TVMKDICHLWELGSGTSRLEVAS---LF----SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE 151 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~~Li~---~~----r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~ 151 (890)
.+..++.+.||+|..+-..+.. .| +...+. .++++++|+|.+.+-+- .-......
T Consensus 223 -~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~--~a~vvllviDa~~~~~~--qD~~ia~~------------- 284 (444)
T COG1160 223 -RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIE--RADVVLLVIDATEGISE--QDLRIAGL------------- 284 (444)
T ss_pred -ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHh--hcCEEEEEEECCCCchH--HHHHHHHH-------------
Confidence 1234799999999753221111 11 111122 48999999999998763 22222221
Q ss_pred hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHH-HHHcCCeEEEEeccCCCCHHHHHH
Q psy11649 152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHSSLDPGLVKRTRD 230 (890)
Q Consensus 152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~l-a~~~Ga~l~etSAK~~~nId~Lk~ 230 (890)
+...+.+++||.||+|+.+. +....+....++++. -+-..++++++||+++.++..+.+
T Consensus 285 -------------------i~~~g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 285 -------------------IEEAGRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFE 344 (444)
T ss_pred -------------------HHHcCCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHH
Confidence 22347899999999999743 112233333344442 233358899999999999999988
Q ss_pred HHHHHH
Q psy11649 231 ILNHYA 236 (890)
Q Consensus 231 ~I~~~l 236 (890)
.+....
T Consensus 345 ~i~~~~ 350 (444)
T COG1160 345 AIKEIY 350 (444)
T ss_pred HHHHHH
Confidence 886553
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.37 E-value=5.7e-12 Score=131.40 Aligned_cols=148 Identities=16% Similarity=0.098 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC---------------------------------CCCccceeEEEEEEeccccce
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTP---------------------------------KPTLALEYIYARKSGKTVMKD 83 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~---------------------------------kptigvdY~f~~~~g~~~~k~ 83 (890)
+|+|+|.+|+|||||+++|+...... ..+++++..+.... ..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~---~~~~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS---TPKR 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe---cCCc
Confidence 58999999999999999998632211 12333332221111 1233
Q ss_pred EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649 84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 163 (890)
Q Consensus 84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~ 163 (890)
++.+|||||+..|....... +. .+|++|+|+|.++...- ........+..
T Consensus 78 ~~~liDTpG~~~~~~~~~~~----~~--~ad~~llVvD~~~~~~~--~~~~~~~~~~~---------------------- 127 (208)
T cd04166 78 KFIIADTPGHEQYTRNMVTG----AS--TADLAILLVDARKGVLE--QTRRHSYILSL---------------------- 127 (208)
T ss_pred eEEEEECCcHHHHHHHHHHh----hh--hCCEEEEEEECCCCccH--hHHHHHHHHHH----------------------
Confidence 79999999987764332222 11 49999999999986532 22221111110
Q ss_pred cccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHH
Q psy11649 164 EHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRT 228 (890)
Q Consensus 164 ~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~L 228 (890)
.++ ++|+|+||+|+... +.+....+..+++.++..+|. +++++||+++.|+++.
T Consensus 128 ----------~~~~~iIvviNK~D~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 128 ----------LGIRHVVVAVNKMDLVDY-SEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred ----------cCCCcEEEEEEchhcccC-CHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 133 57889999998521 111223455667777777774 4899999999999854
No 206
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.37 E-value=1e-11 Score=147.88 Aligned_cols=157 Identities=12% Similarity=0.030 Sum_probs=100.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
..+..+|+++|..++|||||+++|.+... ...++++.++........ ....+.+|||||++.|..+.... +.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~--~~~~i~~iDTPGhe~F~~~r~rg----a~ 157 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE--DGKMITFLDTPGHEAFTSMRARG----AK 157 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC--CCcEEEEEECCCCcchhhHHHhh----hc
Confidence 44567899999999999999999988532 223444444332222211 12279999999999988776554 11
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
.+|++|+|+|.++...- ...+.+.. ....++|+++++||+|+..
T Consensus 158 --~aDiaILVVda~dgv~~-qT~e~i~~---------------------------------~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 158 --VTDIVVLVVAADDGVMP-QTIEAISH---------------------------------AKAANVPIIVAINKIDKPE 201 (587)
T ss_pred --cCCEEEEEEECCCCCCH-hHHHHHHH---------------------------------HHHcCCCEEEEEECccccc
Confidence 48999999999874332 22222211 1123689999999999852
Q ss_pred CCCcchhhhhHHHHHH---HHHHcC--CeEEEEeccCCCCHHHHHHHHHH
Q psy11649 190 NLEPNKKRIAVQCLRY---LAHVNG--ASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~---la~~~G--a~l~etSAK~~~nId~Lk~~I~~ 234 (890)
. + . ......++. .+..++ .+++++||++|.|++++++.|..
T Consensus 202 ~-~--~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 202 A-N--P-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred C-C--H-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 1 1 1 111122221 222333 47999999999999999888753
No 207
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.35 E-value=9.6e-12 Score=143.37 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=99.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~ 80 (890)
..++|+++|..++|||||+.+|+...+ ....+++++..+.....
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~--- 82 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET--- 82 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc---
Confidence 468999999999999999999985211 11235555654433322
Q ss_pred cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649 81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 160 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~ 160 (890)
.+..++|||+||++.|....... +. ++|++|+|+|+++.++. ....+...+. ...
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~----~~--~aD~~ilVvDa~~~~~~--~~~~t~~~~~-~~~---------------- 137 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITG----AS--QADAAVLVVAVGDGEFE--VQPQTREHAF-LAR---------------- 137 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhh----hh--hCCEEEEEEECCCCCcc--cCCchHHHHH-HHH----------------
Confidence 23479999999987663322222 12 49999999999998543 1111111110 000
Q ss_pred ccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649 161 TADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR 227 (890)
Q Consensus 161 ~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~ 227 (890)
.++ .|++||+||+|+.. .+.+....+..+++.+++.+| ++++++||++|.|+++
T Consensus 138 ------------~~~~~~iIVviNK~Dl~~-~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 138 ------------TLGINQLIVAINKMDSVN-YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ------------HcCCCeEEEEEEChhccC-ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 012 47999999999852 222334456677888888776 5799999999999986
No 208
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.34 E-value=2.2e-11 Score=145.74 Aligned_cols=155 Identities=17% Similarity=0.076 Sum_probs=102.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC---------C--------CCCccceeEEEEEEec--cccceEEEEEEcCCCcc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDT---------P--------KPTLALEYIYARKSGK--TVMKDICHLWELGSGTS 95 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~---------~--------kptigvdY~f~~~~g~--~~~k~~l~IwDlpG~~~ 95 (890)
-.+|+++|..++|||||+.+|+...+. + ..++++.......... ......+++|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 468999999999999999999863210 0 1122221111111111 12234899999999998
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP 175 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~ 175 (890)
|...+..+ +. .+|++|+|+|+++..+. ..+..|.... ..+
T Consensus 87 F~~~v~~s----l~--~aD~aILVVDas~gv~~-qt~~~~~~~~---------------------------------~~~ 126 (600)
T PRK05433 87 FSYEVSRS----LA--ACEGALLVVDASQGVEA-QTLANVYLAL---------------------------------END 126 (600)
T ss_pred HHHHHHHH----HH--HCCEEEEEEECCCCCCH-HHHHHHHHHH---------------------------------HCC
Confidence 87666655 22 49999999999997665 4444554311 126
Q ss_pred CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649 176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+|+++|+||+|+... .. .....+++..+++. ++++||++|.|++++.+.|.+.+
T Consensus 127 lpiIvViNKiDl~~a----~~---~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 127 LEIIPVLNKIDLPAA----DP---ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred CCEEEEEECCCCCcc----cH---HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 899999999998421 11 12234455555654 89999999999999999998775
No 209
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.34 E-value=1.6e-11 Score=149.65 Aligned_cols=157 Identities=11% Similarity=0.003 Sum_probs=101.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
..+...|+|+|..++|||||+++|.+... ...++++.+........ .+..+.+|||||+..|..+.... ..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~---~~~~ItfiDTPGhe~F~~m~~rg----a~ 359 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET---NGGKITFLDTPGHEAFTAMRARG----AQ 359 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE---CCEEEEEEECCCCccchhHHHhh----hh
Confidence 45667899999999999999999987432 22233332221111111 12479999999999987777654 11
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
.+|++|+|+|.++...- ...+.|.. ....++|+|||+||+|+..
T Consensus 360 --~aDiaILVVdAddGv~~-qT~e~i~~---------------------------------a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 360 --VTDIVVLVVAADDGVMP-QTIEAINH---------------------------------AKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred --hCCEEEEEEECCCCCCH-hHHHHHHH---------------------------------HHhcCCcEEEEEECccccc
Confidence 38999999999884321 12222211 1123689999999999842
Q ss_pred CCCcchhhhhHHHH---HHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 190 NLEPNKKRIAVQCL---RYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 190 d~d~e~r~~i~~~l---r~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
. + ... +..++ ..++..+| ++++++||++|.|+++|++.|...
T Consensus 404 a-~--~e~-V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 404 A-N--PDR-VKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred c-C--HHH-HHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 1 1 111 11122 22344555 689999999999999999888653
No 210
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=139.76 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=107.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh---h-c
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF---S-S 105 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~---r-~ 105 (890)
..-++++++|.||||||||+|.|++++. ...|+++-|+--. .-+..+..+++.||+|...-.+.+... | .
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee---~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE---DINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEE---EEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 3458999999999999999999999743 3447777664221 222334589999999988776666655 2 1
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
+.+. .||.|++|+|.+.+.+-.+....+ ....+.|+++|.||.
T Consensus 292 ~~i~--~ADlvL~v~D~~~~~~~~d~~~~~-----------------------------------~~~~~~~~i~v~NK~ 334 (454)
T COG0486 292 KAIE--EADLVLFVLDASQPLDKEDLALIE-----------------------------------LLPKKKPIIVVLNKA 334 (454)
T ss_pred HHHH--hCCEEEEEEeCCCCCchhhHHHHH-----------------------------------hcccCCCEEEEEech
Confidence 2222 699999999999974421111111 012368999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
|+..... ...+....+.+++.+|++++.|++.|++.|.+...
T Consensus 335 DL~~~~~----------~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 335 DLVSKIE----------LESEKLANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred hcccccc----------cchhhccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 9964211 11111223446899999999999999999999873
No 211
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.31 E-value=2.3e-11 Score=140.16 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=97.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~ 80 (890)
..++|+++|.+++|||||+++|+.... ...++++++..+.....
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~--- 81 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET--- 81 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec---
Confidence 468999999999999999999985211 11345555544333222
Q ss_pred cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649 81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 160 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~ 160 (890)
.+.++.+|||||+..|....... +. ++|++|+|+|.+++..+......+...+.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~----~~--~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-------------------- 135 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITG----AS--QADAAVLVVAADDAGGVMPQTREHVFLAR-------------------- 135 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhc----hh--cCCEEEEEEEcccCCCCCcchHHHHHHHH--------------------
Confidence 23489999999987664322111 11 49999999999973222111112221111
Q ss_pred ccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHHH
Q psy11649 161 TADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRTR 229 (890)
Q Consensus 161 ~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~Lk 229 (890)
..++ |++||+||+|+.. .+.+....+.++++.++...| ++++++||++|.|++++.
T Consensus 136 ------------~~~~~~iivviNK~Dl~~-~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 136 ------------TLGINQLIVAINKMDAVN-YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ------------HcCCCeEEEEEEcccccc-ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1233 6999999999853 111122345566777777666 469999999999998743
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.31 E-value=3.3e-11 Score=144.45 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC-----CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK-----NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~-----~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
-|+++|..++|||||+++|++. .+..+.+++++..|...... .+..+.+||+||+++|....... + .
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~--~g~~i~~IDtPGhe~fi~~m~~g----~--~ 73 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP--DGRVLGFIDVPGHEKFLSNMLAG----V--G 73 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC--CCcEEEEEECCCHHHHHHHHHHH----h--h
Confidence 4789999999999999999973 12344566666554433211 22368999999998773332222 1 2
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc-EEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d 190 (890)
++|++++|+|.++... ......+..+ ..+++| ++||+||+|+..
T Consensus 74 ~~D~~lLVVda~eg~~--~qT~ehl~il--------------------------------~~lgi~~iIVVlNKiDlv~- 118 (614)
T PRK10512 74 GIDHALLVVACDDGVM--AQTREHLAIL--------------------------------QLTGNPMLTVALTKADRVD- 118 (614)
T ss_pred cCCEEEEEEECCCCCc--HHHHHHHHHH--------------------------------HHcCCCeEEEEEECCccCC-
Confidence 5999999999987432 1111112111 123566 579999999852
Q ss_pred CCcchhhhhHHHHHHHHHHcC---CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~G---a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.......+++.+....+ ++++++||++|.|++.|++.|....
T Consensus 119 --~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 119 --EARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 1223334456666666555 6799999999999999999998764
No 213
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.28 E-value=2e-11 Score=124.79 Aligned_cols=132 Identities=26% Similarity=0.441 Sum_probs=106.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+.+|+..+..+... .+. ...++++|+|+|++.++ +.++.|+..++.+..
T Consensus 51 l~iwDt~G~~~~~~~~~~--~~~----~a~~iilv~D~t~~~s~-~~i~~~~~~~~~~~~-------------------- 103 (182)
T cd04128 51 FSIWDLGGQREFINMLPL--VCN----DAVAILFMFDLTRKSTL-NSIKEWYRQARGFNK-------------------- 103 (182)
T ss_pred EEEEeCCCchhHHHhhHH--HCc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 589999999777665554 222 22378999999999998 888999987654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-.+| |+||||+|+..+++++.+..+....+.+|..+|++.|.||+|.
T Consensus 104 --------------------------------~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~ 150 (182)
T cd04128 104 --------------------------------TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSH 150 (182)
T ss_pred --------------------------------CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCC
Confidence 0256 5789999998777766666667889999999999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCCCCcceecccCCce
Q psy11649 553 PGLVKRTRDILNHYAFSSHLASAVNFDYNKPI 584 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~i 584 (890)
+.|++.+++.+.-.+|+.|...+.....++|+
T Consensus 151 g~~v~~lf~~l~~~l~~~~~~~~~~~~~~~~~ 182 (182)
T cd04128 151 SINVQKIFKIVLAKAFDLPLTIPEILTVGEPI 182 (182)
T ss_pred CCCHHHHHHHHHHHHHhcCCChhhhcCCCCCC
Confidence 99999999999999999999999888777764
No 214
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=3.8e-11 Score=130.63 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=106.1
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---eccccce-EEEEEEcCCCcc--hhhHHhh---
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKTVMKD-ICHLWELGSGTS--RLEVASL--- 102 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~~~k~-~l~IwDlpG~~~--~~~Li~~--- 102 (890)
.+...+|+|.|.||||||||++++++ .+|.++ +|.|+++. |....+. ++|++||||.-. +++....
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~----AkpEvA-~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~q 239 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTT----AKPEVA-PYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQ 239 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhc----CCCccC-CCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHH
Confidence 44578999999999999999999999 566666 78888776 5444444 999999999621 1111110
Q ss_pred -hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEE
Q psy11649 103 -FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILI 181 (890)
Q Consensus 103 -~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVV 181 (890)
...-..- +++|++++|.|...-| .++.-...+.+... .+..|+++|
T Consensus 240 Ai~AL~hl---~~~IlF~~D~Se~cgy--~lE~Q~~L~~eIk~----------------------------~f~~p~v~V 286 (346)
T COG1084 240 AILALRHL---AGVILFLFDPSETCGY--SLEEQISLLEEIKE----------------------------LFKAPIVVV 286 (346)
T ss_pred HHHHHHHh---cCeEEEEEcCccccCC--CHHHHHHHHHHHHH----------------------------hcCCCeEEE
Confidence 0000122 6899999999987665 55544433322211 134799999
Q ss_pred eecccCCCCCCcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 182 GGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 182 gNK~Dl~~d~d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.||+|+.. .+.. ++++.....- +.....+++.++.+++.+++.+...+
T Consensus 287 ~nK~D~~~---~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 287 INKIDIAD---EEKL----EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred Eecccccc---hhHH----HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHh
Confidence 99999852 1111 2222223333 34477889999999999988887764
No 215
>KOG0071|consensus
Probab=99.28 E-value=3.6e-11 Score=115.90 Aligned_cols=159 Identities=16% Similarity=0.244 Sum_probs=110.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
++++|+.+|-.++||||++.+|+-+ ..+..||+| |...+++.++ .++++||++|+.+.+.++..| |. +
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvG--FnvetVtykN---~kfNvwdvGGqd~iRplWrhY----y~--g 84 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHY----YT--G 84 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccc--eeEEEEEeee---eEEeeeeccCchhhhHHHHhh----cc--C
Confidence 4789999999999999999999864 557778888 3333444333 379999999999999999999 33 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
..++|+|+|..+..++ +.-.+++.+.+.. -.....|++|.+||.|+.....
T Consensus 85 tqglIFV~Dsa~~dr~----eeAr~ELh~ii~~-------------------------~em~~~~~LvlANkQDlp~A~~ 135 (180)
T KOG0071|consen 85 TQGLIFVVDSADRDRI----EEARNELHRIIND-------------------------REMRDAIILILANKQDLPDAMK 135 (180)
T ss_pred CceEEEEEeccchhhH----HHHHHHHHHHhCC-------------------------HhhhcceEEEEecCcccccccC
Confidence 8899999999888665 3333333333322 1123589999999999964332
Q ss_pred cchhhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.+ ++.. +.. ++...-.+..++|.++.++.+-..++.+.+
T Consensus 136 pqe---i~d~leLe~-~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 PQE---IQDKLELER-IRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred HHH---HHHHhcccc-ccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 211 1111 111 122234588999999999988877776654
No 216
>KOG1489|consensus
Probab=99.27 E-value=6.8e-11 Score=127.75 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---eccccce--EEEEEEcCCCcchhh----HHhhh-hc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKTVMKD--ICHLWELGSGTSRLE----VASLF-SS 105 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~~~k~--~l~IwDlpG~~~~~~----Li~~~-r~ 105 (890)
..|-+||-||+|||||+++++. .+|-++ +|.|++.. +....++ ++.|=|+||...-.. +-..| +.
T Consensus 197 advGLVG~PNAGKSTLL~als~----AKpkVa-~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrH 271 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSR----AKPKVA-HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRH 271 (366)
T ss_pred cccceecCCCCcHHHHHHHhhc----cCCccc-ccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHH
Confidence 3467999999999999999998 678887 88888877 3333333 699999999764322 22223 22
Q ss_pred cccccccCcEEEEEEeCCCcC--chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLN--SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~--S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
+..+..+++|+|++.+. +-|+.+.....++..+-+.+ ...|.++|+|
T Consensus 272 ----iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L---------------------------~~rp~liVaN 320 (366)
T KOG1489|consen 272 ----IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL---------------------------ADRPALIVAN 320 (366)
T ss_pred ----HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh---------------------------ccCceEEEEe
Confidence 12389999999999871 22366666666665543331 1479999999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHH
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~ 235 (890)
|+|+.+ .. ...+.+++.++.-+ ++.+||+++++++++.+.|.+.
T Consensus 321 KiD~~e-----ae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 321 KIDLPE-----AE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred ccCchh-----HH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 999841 21 12357777777544 9999999999999998877653
No 217
>KOG0076|consensus
Probab=99.27 E-value=8.5e-12 Score=124.27 Aligned_cols=155 Identities=16% Similarity=0.192 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC-C--------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK-N--------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSS 105 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~-~--------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~ 105 (890)
++.|+++|..|+|||||+-++-.. . ...-+|+|+.. .++... ...+++||++|++++++++..|
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~---~~~l~fwdlgGQe~lrSlw~~y-- 89 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC---NAPLSFWDLGGQESLRSLWKKY-- 89 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec---cceeEEEEcCChHHHHHHHHHH--
Confidence 577999999999999999887552 1 23346677542 122222 3489999999999999999998
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
|. -++++|+++|.+++++|.++-..+-..+.... -.++|+++.+||.
T Consensus 90 --Y~--~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~-----------------------------leg~p~L~lankq 136 (197)
T KOG0076|consen 90 --YW--LAHGIIYVIDATDRERFEESKTAFEKVVENEK-----------------------------LEGAPVLVLANKQ 136 (197)
T ss_pred --HH--HhceeEEeecCCCHHHHHHHHHHHHHHHHHHH-----------------------------hcCCchhhhcchh
Confidence 22 38999999999999998333222222222211 1379999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHH---HHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 186 DLFENLEPNKKRIAVQCLRYL---AHVN---GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~l---a~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+.... ...+++.. +... .+++..+||.+|+||++-.+++...+
T Consensus 137 d~q~~~-------~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 137 DLQNAM-------EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhhh-------hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 984211 12222221 2232 36799999999999999988888776
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.26 E-value=8.9e-11 Score=122.74 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=91.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC---------------------CCCccceeEEEEEE--eccccceEEEEEEcCCC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTP---------------------KPTLALEYIYARKS--GKTVMKDICHLWELGSG 93 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~---------------------kptigvdY~f~~~~--g~~~~k~~l~IwDlpG~ 93 (890)
+|+++|..++|||||+++|+...... ..++++........ ........+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 69999999999999999998732110 01111110000110 01122348999999999
Q ss_pred cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
..+......+ +. .+|++|+|+|.++..+. ....|++.+..
T Consensus 82 ~~f~~~~~~~----~~--~aD~~llVvD~~~~~~~--~~~~~~~~~~~-------------------------------- 121 (213)
T cd04167 82 VNFMDEVAAA----LR--LSDGVVLVVDVVEGVTS--NTERLIRHAIL-------------------------------- 121 (213)
T ss_pred cchHHHHHHH----HH--hCCEEEEEEECCCCCCH--HHHHHHHHHHH--------------------------------
Confidence 8886655544 11 39999999999988775 33334332211
Q ss_pred CCCcEEEEeecccCCC-C--CCc----chhhhhHHHHHHHHHHcCC-------e----EEEEeccCCCCHH
Q psy11649 174 FPVPLILIGGKYDLFE-N--LEP----NKKRIAVQCLRYLAHVNGA-------S----LLFHSSLDPGLVK 226 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~-d--~d~----e~r~~i~~~lr~la~~~Ga-------~----l~etSAK~~~nId 226 (890)
.++|+++|+||+|+.. + +++ +....+.+.+..++..+++ + +++.|++.+-+++
T Consensus 122 ~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 122 EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 1589999999999751 0 111 1222334456666665543 2 7789999887664
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.25 E-value=1.3e-10 Score=123.08 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=93.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC----------------Ccc-------ceeEEEEE--------------Eecc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTPKP----------------TLA-------LEYIYARK--------------SGKT 79 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~kp----------------tig-------vdY~f~~~--------------~g~~ 79 (890)
||+++|+.++|||||+++|+.+...... +.+ +.|.+... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999963211100 000 11110000 0000
Q ss_pred ccceEEEEEEcCCCcchhhHHh-hhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649 80 VMKDICHLWELGSGTSRLEVAS-LFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH 158 (890)
Q Consensus 80 ~~k~~l~IwDlpG~~~~~~Li~-~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~ 158 (890)
.....+.+.||||...|..-.. .... .. +|++++|+|++.... .....++..+.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~--~~---~D~~llVvda~~g~~--~~d~~~l~~l~------------------ 135 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTG--YA---PDYAMLVVAANAGII--GMTKEHLGLAL------------------ 135 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcc--cC---CCEEEEEEECCCCCc--HHHHHHHHHHH------------------
Confidence 1123789999999977633222 1110 12 899999999987544 23233333221
Q ss_pred ccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH--------------------------cCC
Q psy11649 159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV--------------------------NGA 212 (890)
Q Consensus 159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~--------------------------~Ga 212 (890)
..++|+++|.||+|+.. .+........+.++... ..+
T Consensus 136 --------------~~~ip~ivvvNK~D~~~---~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
T cd04165 136 --------------ALNIPVFVVVTKIDLAP---ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIV 198 (224)
T ss_pred --------------HcCCCEEEEEECccccC---HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccC
Confidence 13689999999999852 11222223333333221 124
Q ss_pred eEEEEeccCCCCHHHHHHHHHHH
Q psy11649 213 SLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 213 ~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
++|.+||.+|.|+++|+++|..+
T Consensus 199 pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 199 PIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred cEEEeeCCCccCHHHHHHHHHhc
Confidence 89999999999999999998765
No 220
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.25 E-value=7.9e-11 Score=140.22 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC------CCCCccceeEEEEEE-ecc-----------ccc-eEEEEEEcCCCcchh
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDT------PKPTLALEYIYARKS-GKT-----------VMK-DICHLWELGSGTSRL 97 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~------~kptigvdY~f~~~~-g~~-----------~~k-~~l~IwDlpG~~~~~ 97 (890)
-|+++|.+++|||||+++|++.... ...++|..+ .... ... ..+ ..+.+|||||++.|.
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~--v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATE--IPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeE--eeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 5999999999999999999985321 222334222 1111 100 000 148899999999888
Q ss_pred hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc
Q psy11649 98 EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP 177 (890)
Q Consensus 98 ~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP 177 (890)
.+...+ ++ .+|++++|+|+++..+. .+.+.+ +.++ ..++|
T Consensus 84 ~l~~~~----~~--~aD~~IlVvD~~~g~~~-qt~e~i-~~l~--------------------------------~~~vp 123 (590)
T TIGR00491 84 NLRKRG----GA--LADLAILIVDINEGFKP-QTQEAL-NILR--------------------------------MYKTP 123 (590)
T ss_pred HHHHHH----Hh--hCCEEEEEEECCcCCCH-hHHHHH-HHHH--------------------------------HcCCC
Confidence 877665 12 49999999999973221 111111 1111 12689
Q ss_pred EEEEeecccCCCCCCcc-----------hhhhh--------HHHHHHHHH------------Hc--CCeEEEEeccCCCC
Q psy11649 178 LILIGGKYDLFENLEPN-----------KKRIA--------VQCLRYLAH------------VN--GASLLFHSSLDPGL 224 (890)
Q Consensus 178 iIVVgNK~Dl~~d~d~e-----------~r~~i--------~~~lr~la~------------~~--Ga~l~etSAK~~~n 224 (890)
+++|+||+|+....... ....+ ...+.+++. .+ .++++++||++|+|
T Consensus 124 iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG 203 (590)
T TIGR00491 124 FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG 203 (590)
T ss_pred EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC
Confidence 99999999986321100 00000 001112221 12 25799999999999
Q ss_pred HHHHHHHHHHHH
Q psy11649 225 VKRTRDILNHYA 236 (890)
Q Consensus 225 Id~Lk~~I~~~l 236 (890)
+++|.+.|..+.
T Consensus 204 ideLl~~l~~l~ 215 (590)
T TIGR00491 204 IPELLTMLAGLA 215 (590)
T ss_pred hhHHHHHHHHHH
Confidence 999998886543
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.25 E-value=1.2e-10 Score=119.63 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=97.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC----CCCCCCccceeEEEEEEeccccceEEEEEEcCCC----------cchhhH
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG----------TSRLEV 99 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~----------~~~~~L 99 (890)
...-|+++|.+|||||||||.|+++. .+-.|+.+-...|.. -...+.+.|+||- +....+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~------~~~~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE------VDDELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE------ecCcEEEEeCCCcccccCCHHHHHHHHHH
Confidence 34579999999999999999999953 122354442222211 1124899999993 233556
Q ss_pred Hhhh--hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 100 ASLF--SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 100 i~~~--r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
+..| ..+++. ++++++|...+-.-.+ .+..|+. ..++
T Consensus 97 i~~YL~~R~~L~-----~vvlliD~r~~~~~~D~em~~~l~-----------------------------------~~~i 136 (200)
T COG0218 97 IEEYLEKRANLK-----GVVLLIDARHPPKDLDREMIEFLL-----------------------------------ELGI 136 (200)
T ss_pred HHHHHhhchhhe-----EEEEEEECCCCCcHHHHHHHHHHH-----------------------------------HcCC
Confidence 6666 222344 8999999988655311 2222222 2379
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHHHHH----HcCCe--EEEEeccCCCCHHHHHHHHHHHH
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAH----VNGAS--LLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~----~~Ga~--l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|++||+||+|.... .++ ...+...+. ..... ++.+|+.++.|++++++.|...+
T Consensus 137 ~~~vv~tK~DKi~~---~~~---~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 137 PVIVVLTKADKLKK---SER---NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred CeEEEEEccccCCh---hHH---HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 99999999998731 112 222333333 23333 78889999999999999998775
No 222
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.24 E-value=7.4e-11 Score=135.32 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=98.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-----CCC--CCccceeEEEE--------------EE-e--c---c-ccceEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND-----TPK--PTLALEYIYAR--------------KS-G--K---T-VMKDIC 85 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~k--ptigvdY~f~~--------------~~-g--~---~-~~k~~l 85 (890)
..++|+++|..++|||||+.+|++... ... -|+.+.|.+.. .. . . . .....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 468999999999999999999986311 111 12222221110 00 0 0 0 012379
Q ss_pred EEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccc
Q psy11649 86 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH 165 (890)
Q Consensus 86 ~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~ 165 (890)
.+||+||++.|....... . ..+|++|+|+|.++.... ......+..+.
T Consensus 83 ~liDtPGh~~f~~~~~~g----~--~~aD~aIlVVDa~~g~~~-~qt~e~l~~l~------------------------- 130 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSG----A--ALMDGALLVIAANEPCPQ-PQTKEHLMALE------------------------- 130 (406)
T ss_pred EEEECCCHHHHHHHHHHH----H--HHCCEEEEEEECCCCccc-cchHHHHHHHH-------------------------
Confidence 999999998774433333 1 138999999999975311 11122222111
Q ss_pred cccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 166 RDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 166 ~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.++ .|+++|+||+|+.. .+.......+++.+...+ +++++++||+++.|+++|+++|...+
T Consensus 131 -------~~gi~~iIVvvNK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 131 -------IIGIKNIVIVQNKIDLVS---KEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred -------HcCCCeEEEEEEccccCC---HHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 112 36899999999863 112222234445554443 67899999999999999999998765
No 223
>COG2262 HflX GTPases [General function prediction only]
Probab=99.23 E-value=1.7e-10 Score=129.02 Aligned_cols=160 Identities=18% Similarity=0.108 Sum_probs=103.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SSFS 107 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~~~ 107 (890)
.-..|.++|..|+|||||+|+|++... ...--.+++-+ ++.....++..+-+-||.|..+- ..++..| +-+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpt--tR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPT--TRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCc--eeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 367899999999999999999998421 11111222321 22222222347899999996543 5666666 3222
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
.. .+|+++.|+|.|+|.-. ..+..-.+.+.+ +.-..+|+|+|.||+|+
T Consensus 269 ~~--~aDlllhVVDaSdp~~~-~~~~~v~~vL~e-----------------------------l~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 269 VK--EADLLLHVVDASDPEIL-EKLEAVEDVLAE-----------------------------IGADEIPIILVLNKIDL 316 (411)
T ss_pred hh--cCCEEEEEeecCChhHH-HHHHHHHHHHHH-----------------------------cCCCCCCEEEEEecccc
Confidence 22 49999999999999432 444333333322 23335899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
..+.. .+..+....+ ..+++||+++.|++.|++.|...+.
T Consensus 317 ~~~~~---------~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 317 LEDEE---------ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred cCchh---------hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 63211 1222222223 5799999999999999999999874
No 224
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.20 E-value=4.3e-10 Score=116.64 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC------CC------------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK------ND------------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~------~~------------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~ 96 (890)
..+|+++|..++|||||+++|+.. .. ....+++++-..... ...+.++.+.||||...|
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~---~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY---ETANRHYAHVDCPGHADY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEe---cCCCeEEEEEECcCHHHH
Confidence 478999999999999999999863 00 012333333221111 112337899999998655
Q ss_pred hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
..-.... +. .+|++++|+|.+....- .....+..+. ..++
T Consensus 79 ~~~~~~~----~~--~~D~~ilVvda~~g~~~--~~~~~~~~~~--------------------------------~~~~ 118 (195)
T cd01884 79 IKNMITG----AA--QMDGAILVVSATDGPMP--QTREHLLLAR--------------------------------QVGV 118 (195)
T ss_pred HHHHHHH----hh--hCCEEEEEEECCCCCcH--HHHHHHHHHH--------------------------------HcCC
Confidence 3222222 11 49999999999875331 2222222221 2367
Q ss_pred c-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCH
Q psy11649 177 P-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLV 225 (890)
Q Consensus 177 P-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nI 225 (890)
| +++|.||+|+.. +.+..+.+..+++++....| ++++++||++|.|+
T Consensus 119 ~~iIvviNK~D~~~--~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 119 PYIVVFLNKADMVD--DEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred CcEEEEEeCCCCCC--cHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 7 789999999862 11223334556666666654 67999999999985
No 225
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.17 E-value=3.3e-10 Score=135.25 Aligned_cols=158 Identities=10% Similarity=0.058 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCccceeEEEEEE----ecccc----c---eEEEEEEcCCCcchh
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND------TPKPTLALEYIYARKS----GKTVM----K---DICHLWELGSGTSRL 97 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~------~~kptigvdY~f~~~~----g~~~~----k---~~l~IwDlpG~~~~~ 97 (890)
...|+++|.+|+|||||+++|.+... .+..++|..+...... +.... + ..+.+|||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 44699999999999999999987421 1122344322110000 10000 0 027899999999887
Q ss_pred hHHhhhhccccccccCcEEEEEEeCCC---cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 98 EVASLFSSFSLTAQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 98 ~Li~~~r~~~~~~~~ad~IIIV~DlSn---p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
.+.... +. .+|++|+|+|+++ +.++ +.+. .++ ..
T Consensus 86 ~~~~~~----~~--~aD~~IlVvDa~~g~~~qt~-e~i~----~~~--------------------------------~~ 122 (586)
T PRK04004 86 NLRKRG----GA--LADIAILVVDINEGFQPQTI-EAIN----ILK--------------------------------RR 122 (586)
T ss_pred HHHHHh----Hh--hCCEEEEEEECCCCCCHhHH-HHHH----HHH--------------------------------Hc
Confidence 776654 11 4999999999998 4443 2221 111 12
Q ss_pred CCcEEEEeecccCCCCCCcch-----------hhhhHH--------HHHHHHH------------Hc--CCeEEEEeccC
Q psy11649 175 PVPLILIGGKYDLFENLEPNK-----------KRIAVQ--------CLRYLAH------------VN--GASLLFHSSLD 221 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~-----------r~~i~~--------~lr~la~------------~~--Ga~l~etSAK~ 221 (890)
++|+++|+||+|+........ ...... ....++. .+ .++++++||++
T Consensus 123 ~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 123 KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 689999999999852111000 000010 1112221 11 25799999999
Q ss_pred CCCHHHHHHHHHHH
Q psy11649 222 PGLVKRTRDILNHY 235 (890)
Q Consensus 222 ~~nId~Lk~~I~~~ 235 (890)
|.|+++|.+.+...
T Consensus 203 GeGi~dLl~~i~~~ 216 (586)
T PRK04004 203 GEGIPDLLMVLAGL 216 (586)
T ss_pred CCChHHHHHHHHHH
Confidence 99999998887543
No 226
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.17 E-value=2.7e-10 Score=130.88 Aligned_cols=159 Identities=13% Similarity=0.140 Sum_probs=97.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC--C---CCCCCCccceeEEEE-----------------EEec---c---ccceEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK--N---DTPKPTLALEYIYAR-----------------KSGK---T---VMKDIC 85 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~--~---~~~kptigvdY~f~~-----------------~~g~---~---~~k~~l 85 (890)
..++|+++|..++|||||+.+|++. + .....+++++..|.. .... . ....++
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999999763 1 111222332221110 0000 0 002379
Q ss_pred EEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649 86 HLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 163 (890)
Q Consensus 86 ~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~ 163 (890)
++|||||++.|.. .+ +. ...+|++++|+|++++. .- .....+ ..+..
T Consensus 88 ~liDtPG~~~f~~---~~~~~----~~~~D~~llVVDa~~~~~~~-~t~~~l-~~l~~---------------------- 136 (411)
T PRK04000 88 SFVDAPGHETLMA---TMLSG----AALMDGAILVIAANEPCPQP-QTKEHL-MALDI---------------------- 136 (411)
T ss_pred EEEECCCHHHHHH---HHHHH----HhhCCEEEEEEECCCCCCCh-hHHHHH-HHHHH----------------------
Confidence 9999999876533 23 11 01379999999999753 21 122221 11110
Q ss_pred cccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 164 EHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 164 ~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.++ |+++|+||+|+... +........++.++..+ +.+++++||+++.|+++|++.|...+
T Consensus 137 ----------~~i~~iiVVlNK~Dl~~~---~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 137 ----------IGIKNIVIVQNKIDLVSK---ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred ----------cCCCcEEEEEEeeccccc---hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 123 68999999998631 12222234455555443 57899999999999999999998765
No 227
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=7.3e-10 Score=111.96 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=107.2
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC----------CCCC----CCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN----------DTPK----PTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~----------~~~k----ptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~ 96 (890)
.+..+.||+|+|.-++||||++.++..+. ..++ .|++.|| ..... .++..+++++||||.+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~--g~~~~--~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDF--GSIEL--DEDTGVHLFGTPGQERF 81 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecc--cceEE--cCcceEEEecCCCcHHH
Confidence 45678899999999999999999998852 1222 2444443 23332 22237999999999999
Q ss_pred hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
.-++..+ +.++.++|+++|.+.+..+ .-...+..+. ... .+
T Consensus 82 ~fm~~~l------~~ga~gaivlVDss~~~~~--~a~~ii~f~~------------------------------~~~-~i 122 (187)
T COG2229 82 KFMWEIL------SRGAVGAIVLVDSSRPITF--HAEEIIDFLT------------------------------SRN-PI 122 (187)
T ss_pred HHHHHHH------hCCcceEEEEEecCCCcch--HHHHHHHHHh------------------------------hcc-CC
Confidence 9999999 2369999999999999886 2222222111 111 29
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHHHH-HH-cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLA-HV-NGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-~~-~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
|++|++||.|+.....++ .++++- .. ...+++.++|+++.+..+..+.+...
T Consensus 123 p~vVa~NK~DL~~a~ppe-------~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 123 PVVVAINKQDLFDALPPE-------KIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CEEEEeeccccCCCCCHH-------HHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 999999999997533322 233322 22 37889999999999887765554433
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.17 E-value=5.5e-10 Score=115.55 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccc-eeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLAL-EYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQ 111 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~--~kptigv-dY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~ 111 (890)
++|+|+|.+|||||||+|.|++.... ...+++. +.+.............+.+||+||..........+ +...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~-- 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS-- 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc--
Confidence 58999999999999999999984221 1122221 11100000011111268999999975432222333 221222
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++++|.| .... +.-..|++.+++ .+.|+++|+||+|+....
T Consensus 80 ~~d~~l~v~~-~~~~---~~d~~~~~~l~~--------------------------------~~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 80 EYDFFIIISS-TRFS---SNDVKLAKAIQC--------------------------------MGKKFYFVRTKVDRDLSN 123 (197)
T ss_pred CcCEEEEEeC-CCCC---HHHHHHHHHHHH--------------------------------hCCCEEEEEecccchhhh
Confidence 4788888754 2222 233445544433 157999999999985211
Q ss_pred Ccc------hhhhhHHHHHHHHH----HcC---CeEEEEecc--CCCCHHHHHHHHHHHH
Q psy11649 192 EPN------KKRIAVQCLRYLAH----VNG---ASLLFHSSL--DPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e------~r~~i~~~lr~la~----~~G---a~l~etSAK--~~~nId~Lk~~I~~~l 236 (890)
... .+....+.+++.+. ..| -.+|.+|+. .+.++..|.+.|.+.+
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 100 12222333333333 222 258999998 5789999999998887
No 229
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.16 E-value=2.8e-10 Score=126.40 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=52.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCC--------CCCCCccceeEEEEEE---------------eccccceEEEEEEcCCC-
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEKND--------TPKPTLALEYIYARKS---------------GKTVMKDICHLWELGSG- 93 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~~~--------~~kptigvdY~f~~~~---------------g~~~~k~~l~IwDlpG~- 93 (890)
|++||.||||||||+|+|++... ...|++|+.+...... ........+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998531 2245555443210000 00011237999999998
Q ss_pred ---cchhhHHhhh-hccccccccCcEEEEEEeCCC
Q psy11649 94 ---TSRLEVASLF-SSFSLTAQSGFTLVLMLDLSR 124 (890)
Q Consensus 94 ---~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSn 124 (890)
.++..+...+ .. ++ ++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~--ir--~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDD--LR--DADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHH--HH--HCCEEEEEEeCCC
Confidence 4445554444 11 22 5999999999984
No 230
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.15 E-value=6.4e-10 Score=132.96 Aligned_cols=153 Identities=14% Similarity=0.027 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchh
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL 97 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~ 97 (890)
.+|+++|..++|||||+.+|+...+.. ..++++.-..... ...+.+++||||||+..|.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v---~~~~~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI---RYNGTKINIVDTPGHADFG 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE---EECCEEEEEEECCCHHHHH
Confidence 479999999999999999998632110 1122222111111 1223489999999998886
Q ss_pred hHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 98 EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 98 ~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
..+..+ + .+|++++|+|.++... .....|+..+.+ .++
T Consensus 79 ~ev~~~l~-------~aD~alLVVDa~~G~~--~qT~~~l~~a~~--------------------------------~~i 117 (594)
T TIGR01394 79 GEVERVLG-------MVDGVLLLVDASEGPM--PQTRFVLKKALE--------------------------------LGL 117 (594)
T ss_pred HHHHHHHH-------hCCEEEEEEeCCCCCc--HHHHHHHHHHHH--------------------------------CCC
Confidence 655555 3 4999999999987433 344455443322 268
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHHHHH-------HcCCeEEEEeccCCC----------CHHHHHHHHHHHH
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-------VNGASLLFHSSLDPG----------LVKRTRDILNHYA 236 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~-------~~Ga~l~etSAK~~~----------nId~Lk~~I~~~l 236 (890)
|++||+||+|+... ....+..++..+.. ...++++++||++|. |++.|++.|...+
T Consensus 118 p~IVviNKiD~~~a----~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 118 KPIVVINKIDRPSA----RPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CEEEEEECCCCCCc----CHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 99999999998521 11112233333332 235689999999996 7888888887775
No 231
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.15 E-value=3.1e-10 Score=119.44 Aligned_cols=148 Identities=16% Similarity=0.050 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC------------------C---------------CCCCccceeEEEEEEeccccce
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND------------------T---------------PKPTLALEYIYARKSGKTVMKD 83 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~------------------~---------------~kptigvdY~f~~~~g~~~~k~ 83 (890)
+|+++|..++|||||+.+|+...+ + ...+++++....... ..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~---~~~~ 77 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE---TEKY 77 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe---eCCe
Confidence 489999999999999999964211 0 011122221111111 1234
Q ss_pred EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCc---h--H-HHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649 84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS---L--W-TEAETFLAKFRAIFESNESVREKRGSFE 157 (890)
Q Consensus 84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S---~--~-~~L~~wlq~I~e~~~~ll~~~~~~~~l~ 157 (890)
++.+|||||+..+....... .. .+|++|+|+|.++... + . .....| ....
T Consensus 78 ~i~liDtpG~~~~~~~~~~~----~~--~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~----------------- 133 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITG----AS--QADVAVLVVDARKGEFEAGFEKGGQTREHA-LLAR----------------- 133 (219)
T ss_pred EEEEEECCChHHHHHHHHHH----hh--hCCEEEEEEECCCCccccccccccchHHHH-HHHH-----------------
Confidence 89999999986553322222 11 4899999999998521 0 0 111111 1110
Q ss_pred cccccccccccccccCCC-CcEEEEeecccCCCC-CCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHH
Q psy11649 158 HFRTADEHRDKGLIRTFP-VPLILIGGKYDLFEN-LEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVK 226 (890)
Q Consensus 158 ~~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d-~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId 226 (890)
..+ .|+++|+||+|+... .+.+....+...++.+...++ ++++++||++|.|++
T Consensus 134 ---------------~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 134 ---------------TLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ---------------HcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 112 589999999998621 111223334455555555554 569999999999987
No 232
>PRK10218 GTP-binding protein; Provisional
Probab=99.14 E-value=1.1e-09 Score=131.09 Aligned_cols=157 Identities=12% Similarity=0.028 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC----------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchhh
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP----------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE 98 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~----------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~ 98 (890)
-.+|+++|..++|||||+++|+...+.. ..+.|+.+....... ...+.++++|||||+..|..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcchhHH
Confidence 4689999999999999999999732111 122333322111111 12334899999999998877
Q ss_pred HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649 99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL 178 (890)
Q Consensus 99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi 178 (890)
.+..+ ++ .+|++|+|+|.++.... ....++..+. ..++|.
T Consensus 84 ~v~~~----l~--~aDg~ILVVDa~~G~~~--qt~~~l~~a~--------------------------------~~gip~ 123 (607)
T PRK10218 84 EVERV----MS--MVDSVLLVVDAFDGPMP--QTRFVTKKAF--------------------------------AYGLKP 123 (607)
T ss_pred HHHHH----HH--hCCEEEEEEecccCccH--HHHHHHHHHH--------------------------------HcCCCE
Confidence 66666 22 49999999999885432 2233332211 136899
Q ss_pred EEEeecccCCCCCCcchhhhhHHHHHHHHH-------HcCCeEEEEeccCCC----------CHHHHHHHHHHHH
Q psy11649 179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAH-------VNGASLLFHSSLDPG----------LVKRTRDILNHYA 236 (890)
Q Consensus 179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~-------~~Ga~l~etSAK~~~----------nId~Lk~~I~~~l 236 (890)
++|+||+|+... .......+++.+.. ...++++++||++|. ++..|.+.|.+.+
T Consensus 124 IVviNKiD~~~a----~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 124 IVVINKVDRPGA----RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred EEEEECcCCCCC----chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 999999998521 11112223333321 234679999999998 4777777776665
No 233
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.13 E-value=8.2e-10 Score=120.82 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=108.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---e--ccccceEEEEEEcCCCcch--------hhHHhhhh
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---G--KTVMKDICHLWELGSGTSR--------LEVASLFS 104 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g--~~~~k~~l~IwDlpG~~~~--------~~Li~~~r 104 (890)
|-+||-||+|||||++.++. .+|.++ +|.|++.. | .......+-+=|+||...- ...+...
T Consensus 162 VGLVG~PNaGKSTlls~vS~----AkPKIa-dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI- 235 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSA----AKPKIA-DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHI- 235 (369)
T ss_pred cccccCCCCcHHHHHHHHhh----cCCccc-CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHH-
Confidence 56899999999999999998 677787 78887766 2 2222337899999997543 2222222
Q ss_pred ccccccccCcEEEEEEeCCCcCc--hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 105 SFSLTAQSGFTLVLMLDLSRLNS--LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 105 ~~~~~~~~ad~IIIV~DlSnp~S--~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
..+.+++.|+|++..+. ..++......++..+-..+. ..|.+||+
T Consensus 236 ------ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~---------------------------~K~~ivv~ 282 (369)
T COG0536 236 ------ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLA---------------------------EKPRIVVL 282 (369)
T ss_pred ------HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhc---------------------------cCceEEEE
Confidence 12779999999997654 22455555555555443322 47999999
Q ss_pred ecccCCCCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
||+|+.. ..+..+.....++...+.. .+++||.++.|++.|...+..++...
T Consensus 283 NKiD~~~-----~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 283 NKIDLPL-----DEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eccCCCc-----CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 9999642 2333344455566555544 33399999999999999998887554
No 234
>PRK12735 elongation factor Tu; Reviewed
Probab=99.09 E-value=1.2e-09 Score=125.06 Aligned_cols=159 Identities=12% Similarity=0.072 Sum_probs=99.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC-----C-------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK-----N-------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT 94 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~-----~-------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~ 94 (890)
....+|+++|..++|||||+++|++. . .....+++++..+... ...+.++.++||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~---~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY---ETANRHYAHVDCPGHA 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE---cCCCcEEEEEECCCHH
Confidence 34689999999999999999999862 0 0112344444222111 1123378999999986
Q ss_pred chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
.|..-.... . .++|++++|+|.++...- .....+..+ ...
T Consensus 87 ~f~~~~~~~----~--~~aD~~llVvda~~g~~~--qt~e~l~~~--------------------------------~~~ 126 (396)
T PRK12735 87 DYVKNMITG----A--AQMDGAILVVSAADGPMP--QTREHILLA--------------------------------RQV 126 (396)
T ss_pred HHHHHHHhh----h--ccCCEEEEEEECCCCCch--hHHHHHHHH--------------------------------HHc
Confidence 552222111 1 148999999999874331 222222211 123
Q ss_pred CCcEE-EEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCC----------CHHHHHHHHHHHH
Q psy11649 175 PVPLI-LIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPG----------LVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiI-VVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~----------nId~Lk~~I~~~l 236 (890)
++|.+ +|+||+|+.. +.+..+.+..+++.+...++ ++++++||+++. ++..|.+.|...+
T Consensus 127 gi~~iivvvNK~Dl~~--~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 127 GVPYIVVFLNKCDMVD--DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCCeEEEEEEecCCcc--hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 68866 5799999963 11223445556777777764 679999999984 5677777777654
No 235
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.09 E-value=1.5e-09 Score=124.01 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CC-----CCCccceeEEEE------------EEe---ccccceEEEEEEcCC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TP-----KPTLALEYIYAR------------KSG---KTVMKDICHLWELGS 92 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~-----kptigvdY~f~~------------~~g---~~~~k~~l~IwDlpG 92 (890)
++|++||.||||||||+|+|++... +| .|++|+.+.... +.+ .......+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998532 33 344443321000 000 001113789999999
Q ss_pred Cc----chhhHHhhh-hccccccccCcEEEEEEeCC
Q psy11649 93 GT----SRLEVASLF-SSFSLTAQSGFTLVLMLDLS 123 (890)
Q Consensus 93 ~~----~~~~Li~~~-r~~~~~~~~ad~IIIV~DlS 123 (890)
.. ....+...+ +. ++ ++|++++|+|++
T Consensus 82 l~~ga~~g~glg~~fL~~--ir--~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDD--LR--QADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHH--HH--HCCEEEEEEeCC
Confidence 53 334444444 21 22 599999999998
No 236
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.08 E-value=1.8e-09 Score=115.39 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=83.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--------C------------CCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDT--------P------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~--------~------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~ 96 (890)
+|+++|..|+|||||+++|+...+. . ..++++...+... ...+.++++|||||+..|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~---~~~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF---QWEDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---EECCEEEEEEeCCCccch
Confidence 4899999999999999999863110 0 0011111111111 122348999999999887
Q ss_pred hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
......+ ++ .+|++|+|+|.++.... ....|.+.+.+ .++
T Consensus 78 ~~~~~~~----l~--~aD~~IlVvd~~~g~~~--~~~~~~~~~~~--------------------------------~~~ 117 (237)
T cd04168 78 IAEVERS----LS--VLDGAILVISAVEGVQA--QTRILWRLLRK--------------------------------LNI 117 (237)
T ss_pred HHHHHHH----HH--HhCeEEEEEeCCCCCCH--HHHHHHHHHHH--------------------------------cCC
Confidence 6655555 12 48999999999986553 44444443321 268
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS 218 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS 218 (890)
|+++|+||+|+.. ....+.+..+...++...+.+.
T Consensus 118 P~iivvNK~D~~~-------a~~~~~~~~i~~~~~~~~~~~~ 152 (237)
T cd04168 118 PTIIFVNKIDRAG-------ADLEKVYQEIKEKLSSDIVPMQ 152 (237)
T ss_pred CEEEEEECccccC-------CCHHHHHHHHHHHHCCCeEEEE
Confidence 9999999999852 1123455666667776655544
No 237
>KOG1707|consensus
Probab=99.07 E-value=5e-10 Score=128.88 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=105.7
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCccceeEEEEEE-eccccceEEEEEEcCCCcch-hhHHhhhhccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKNDT-PKPTLALEYIYARKS-GKTVMKDICHLWELGSGTSR-LEVASLFSSFS 107 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~-~kptigvdY~f~~~~-g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~ 107 (890)
....+.+|+|+|+.||||||||..|+..+.. .-|...-.+ ... .........+|.|++....- ..+....+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i---~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir--- 78 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI---LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR--- 78 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc---ccCCccCcCcCceEEEecccccchhHHHHHHHh---
Confidence 4567899999999999999999999985321 112211111 111 12222336899999865432 33344443
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
.+++|.+||++++++++..--..|+-.+++... ....+|||+||||+|.
T Consensus 79 ----kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~---------------------------~~~~~PVILvGNK~d~ 127 (625)
T KOG1707|consen 79 ----KADVICLVYAVDDESTVDRISTKWLPLIRQLFG---------------------------DYHETPVILVGNKSDN 127 (625)
T ss_pred ----hcCEEEEEEecCChHHhhhhhhhhhhhhhcccC---------------------------CCccCCEEEEeeccCC
Confidence 399999999999999983344579988876432 1246899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..+........+...+.++..-- ..++|||++-.|+.+++-+-...+
T Consensus 128 ~~~~~~s~e~~~~pim~~f~EiE--tciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 128 GDNENNSDEVNTLPIMIAFAEIE--TCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred ccccccchhHHHHHHHHHhHHHH--HHHhhhhhhhhhhHhhhhhhhhee
Confidence 75433200111222222222221 258999999999999866554443
No 238
>PRK12736 elongation factor Tu; Reviewed
Probab=99.07 E-value=2.4e-09 Score=122.57 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=99.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC------------------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND------------------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS 95 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------------------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~ 95 (890)
..++|+++|..++|||||+++|++... ....+++++-.+... . ..+..+.++|+||+..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~--~-~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY--E-TEKRHYAHVDCPGHAD 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe--c-CCCcEEEEEECCCHHH
Confidence 468999999999999999999987210 113344444222111 1 1233789999999865
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP 175 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~ 175 (890)
|......- . ..+|++++|+|.++...- .....+..+ ...+
T Consensus 88 f~~~~~~~----~--~~~d~~llVvd~~~g~~~--~t~~~~~~~--------------------------------~~~g 127 (394)
T PRK12736 88 YVKNMITG----A--AQMDGAILVVAATDGPMP--QTREHILLA--------------------------------RQVG 127 (394)
T ss_pred HHHHHHHH----H--hhCCEEEEEEECCCCCch--hHHHHHHHH--------------------------------HHcC
Confidence 53222111 1 148999999999874331 222222211 1236
Q ss_pred Cc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCC--------CHHHHHHHHHHHH
Q psy11649 176 VP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPG--------LVKRTRDILNHYA 236 (890)
Q Consensus 176 IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~--------nId~Lk~~I~~~l 236 (890)
+| +|+|+||+|+..+ .+..+.+..+++.+....+ ++++++||+++. +++.|.+.|...+
T Consensus 128 ~~~~IvviNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 128 VPYLVVFLNKVDLVDD--EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCEEEEEEEecCCcch--HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 88 6789999998621 1112234456777766665 579999999983 5788888887765
No 239
>KOG1423|consensus
Probab=99.06 E-value=2.3e-09 Score=115.49 Aligned_cols=165 Identities=19% Similarity=0.188 Sum_probs=97.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcch---------hh
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSR---------LE 98 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~---------~~ 98 (890)
..+...|+|||.||||||||.|++.+..- ..+..++-. +..| ...++.++-++||||...- .+
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~----~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH----RILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee----eeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 34678999999999999999999999642 222222211 2223 2233448999999996421 11
Q ss_pred HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649 99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL 178 (890)
Q Consensus 99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi 178 (890)
+...++..- .+||++++|+|++++...+. ...+..++++ +.+|-
T Consensus 145 ~lq~~~~a~---q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-------------------------------s~ips 188 (379)
T KOG1423|consen 145 VLQNPRDAA---QNADCVVVVVDASATRTPLH--PRVLHMLEEY-------------------------------SKIPS 188 (379)
T ss_pred hhhCHHHHH---hhCCEEEEEEeccCCcCccC--hHHHHHHHHH-------------------------------hcCCc
Confidence 222332211 24999999999997554311 1122222221 24899
Q ss_pred EEEeecccCCCC----------CCcchhhh-hHHHHHHHHHH---------cCC----eEEEEeccCCCCHHHHHHHHHH
Q psy11649 179 ILIGGKYDLFEN----------LEPNKKRI-AVQCLRYLAHV---------NGA----SLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 179 IVVgNK~Dl~~d----------~d~e~r~~-i~~~lr~la~~---------~Ga----~l~etSAK~~~nId~Lk~~I~~ 234 (890)
++|.||.|..+. +...+... ..+...++... .|. .+|.+||+.|.|++++++||..
T Consensus 189 ~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLms 268 (379)
T KOG1423|consen 189 ILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMS 268 (379)
T ss_pred eeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHh
Confidence 999999997531 00000000 01111111111 112 2899999999999999999987
Q ss_pred HH
Q psy11649 235 YA 236 (890)
Q Consensus 235 ~l 236 (890)
.+
T Consensus 269 qa 270 (379)
T KOG1423|consen 269 QA 270 (379)
T ss_pred cC
Confidence 76
No 240
>KOG1487|consensus
Probab=99.05 E-value=5.2e-10 Score=117.69 Aligned_cols=237 Identities=17% Similarity=0.087 Sum_probs=151.9
Q ss_pred cccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---ecc-ccceEEEEEEcCCCcch-----
Q psy11649 26 VHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKT-VMKDICHLWELGSGTSR----- 96 (890)
Q Consensus 26 ~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~-~~k~~l~IwDlpG~~~~----- 96 (890)
+++.+.+....+|-++|-|+||||||+..|++... .++ .|.|++.+ |.. ....++++.|+||....
T Consensus 50 ~gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s----~va-syefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk 124 (358)
T KOG1487|consen 50 GGFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFS----EVA-AYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK 124 (358)
T ss_pred CCccceeecceeeeEEecCccchhhhhhhhcCCCC----ccc-cccceeEEEecceEeccccceeeecCcchhcccccCC
Confidence 35677788888999999999999999999998321 111 33333333 543 33349999999997532
Q ss_pred ---hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHH-----------------------------h
Q psy11649 97 ---LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIF-----------------------------E 144 (890)
Q Consensus 97 ---~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~-----------------------------~ 144 (890)
++++...|. +..+++|+|+-.|-+--.-++.-++-+.-.+ .
T Consensus 125 grg~qviavart-------cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~r 197 (358)
T KOG1487|consen 125 GRGKQVIAVART-------CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQR 197 (358)
T ss_pred CCccEEEEEeec-------ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHH
Confidence 444444443 8899999999998775333333333222111 1
Q ss_pred hhhhhh---hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEecc
Q psy11649 145 SNESVR---EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSL 220 (890)
Q Consensus 145 ~ll~~~---~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK 220 (890)
..+.++ ++...++-.++.++.-|...-+...+|.+.+.||+|-.. ++++--.+.+ ..+.+||-
T Consensus 198 sil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsIS-------------iEELdii~~iphavpISA~ 264 (358)
T KOG1487|consen 198 SILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSIS-------------IEELDIIYTIPHAVPISAH 264 (358)
T ss_pred HHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceee-------------eeccceeeeccceeecccc
Confidence 111111 333334445566666665445556899999999999741 1111122222 36889999
Q ss_pred CCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCC-CCC-CCCccccccccccccchhHHHhhccc
Q psy11649 221 DPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HGK-DASLESGGRGFNRSRGMKFEKKRGWI 298 (890)
Q Consensus 221 ~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r~-~~~~~~~~~~~~~~~~~~f~~~~~w~ 298 (890)
.+-|++.+.+-+...+ +..+.+..|-|+.. ....|. ++. -.++++++..+|++.-..|+++.+|-
T Consensus 265 ~~wn~d~lL~~mweyL-----------~LvriYtkPKgq~P--Dy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~alvwg 331 (358)
T KOG1487|consen 265 TGWNFDKLLEKMWEYL-----------KLVRIYTKPKGQPP--DYTSPVVLSSERRSVEDFCNKIHKSILKQFKYALVWG 331 (358)
T ss_pred cccchHHHHHHHhhcc-----------hheEEecCCCCCCC--CCCCCceecCCcccHHHHHHHHHHHHHHhhhhheEec
Confidence 9999999988887665 33333444555443 234454 333 44889999999999999999999994
Q ss_pred cc
Q psy11649 299 EG 300 (890)
Q Consensus 299 ~~ 300 (890)
.+
T Consensus 332 ~s 333 (358)
T KOG1487|consen 332 SS 333 (358)
T ss_pred cc
Confidence 43
No 241
>KOG0074|consensus
Probab=99.05 E-value=1.1e-09 Score=105.94 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=104.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+++|+++|-.|+|||||+.+|.+.+. ..-||-|.. .+.....+...++|||++|+...+.++..| |.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn----~k~v~~~g~f~LnvwDiGGqr~IRpyWsNY----ye-- 84 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN----TKKVEYDGTFHLNVWDIGGQRGIRPYWSNY----YE-- 84 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc----eEEEeecCcEEEEEEecCCccccchhhhhh----hh--
Confidence 4589999999999999999999988543 445676633 333333333489999999999999999998 33
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+.|++|+|+|.++...| + ++.+++.+++.. .....+|+.+-.||.|+....
T Consensus 85 nvd~lIyVIDS~D~krf-e-------E~~~el~ELlee---------------------eKl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 85 NVDGLIYVIDSTDEKRF-E-------EISEELVELLEE---------------------EKLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred ccceEEEEEeCCchHhH-H-------HHHHHHHHHhhh---------------------hhhhccceeehhhhhHHHhhc
Confidence 68999999998888777 3 333333222210 122368999999999986421
Q ss_pred CcchhhhhHHHHHHHHHHc--------CCeEEEEeccCCCCHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVN--------GASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~--------Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
. ....|... ...+-+|||.+++++..-.+++.
T Consensus 136 ~----------~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 136 K----------VEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred c----------hHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhh
Confidence 1 12222222 23578899999888776655543
No 242
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.05 E-value=3.8e-09 Score=114.83 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=80.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CCCccceeE---------EEE-EEeccccceEEEEEEcCCC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP-----------KPTLALEYI---------YAR-KSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~-----------kptigvdY~---------f~~-~~g~~~~k~~l~IwDlpG~ 93 (890)
.++|+|+|.+|+|||||+++|+...+.. ..+...||. +.. .......+.++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3579999999999999999998531100 011111211 000 0111122348999999999
Q ss_pred cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
..|....... ++ .+|++|+|+|.++.... ....+.+... .
T Consensus 82 ~df~~~~~~~----l~--~aD~~IlVvda~~g~~~--~~~~i~~~~~--------------------------------~ 121 (267)
T cd04169 82 EDFSEDTYRT----LT--AVDSAVMVIDAAKGVEP--QTRKLFEVCR--------------------------------L 121 (267)
T ss_pred hHHHHHHHHH----HH--HCCEEEEEEECCCCccH--HHHHHHHHHH--------------------------------h
Confidence 8775543333 12 48999999999886442 3333333211 1
Q ss_pred CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS 218 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS 218 (890)
.++|+++++||+|+.. .. ..+.+..+...+|...+.+.
T Consensus 122 ~~~P~iivvNK~D~~~------a~-~~~~~~~l~~~l~~~~~~~~ 159 (267)
T cd04169 122 RGIPIITFINKLDREG------RD-PLELLDEIEEELGIDCTPLT 159 (267)
T ss_pred cCCCEEEEEECCccCC------CC-HHHHHHHHHHHHCCCceeEE
Confidence 2689999999999842 11 11224455556676655544
No 243
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.04 E-value=2e-09 Score=123.05 Aligned_cols=146 Identities=12% Similarity=0.052 Sum_probs=90.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC-----C-------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK-----N-------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT 94 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~-----~-------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~ 94 (890)
...++|+++|..++|||||+++|++. . .....+++++..+.... ....++.+|||||++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~---~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE---TENRHYAHVDCPGHA 86 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc---CCCEEEEEEECCchH
Confidence 34789999999999999999999842 0 01124455543322211 123379999999997
Q ss_pred chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
.|....... . .++|++++|+|+++...- .....+..+ ...
T Consensus 87 ~f~~~~~~~----~--~~~D~~ilVvda~~g~~~--qt~e~l~~~--------------------------------~~~ 126 (394)
T TIGR00485 87 DYVKNMITG----A--AQMDGAILVVSATDGPMP--QTREHILLA--------------------------------RQV 126 (394)
T ss_pred HHHHHHHHH----H--hhCCEEEEEEECCCCCcH--HHHHHHHHH--------------------------------HHc
Confidence 663222111 1 148999999999884332 112222211 123
Q ss_pred CCcEE-EEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCC
Q psy11649 175 PVPLI-LIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPG 223 (890)
Q Consensus 175 ~IPiI-VVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~ 223 (890)
++|.+ +|+||+|+... .+..+.+..+++.++..++ ++++++||+++.
T Consensus 127 gi~~iIvvvNK~Dl~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 127 GVPYIVVFLNKCDMVDD--EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCEEEEEEEecccCCH--HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 67865 68999998631 1112334456777887775 689999999875
No 244
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.04 E-value=2e-09 Score=114.48 Aligned_cols=161 Identities=15% Similarity=0.155 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcccccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTA 110 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~ 110 (890)
||+++|.++|||||+.+-+..+-. .-.+|+.++.. . ........++|||+||+..+....... +...++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~--~--v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~- 75 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKS--H--VRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFS- 75 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEE--E--EECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHC-
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEE--E--EecCCCcEEEEEEcCCccccccccccccHHHHHh-
Confidence 799999999999999999887521 22345554421 1 112223379999999998764442111 222233
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++.++|+|+|+.+.+ +.+.+..+.+.+...... +.++.+-+...|+|+..
T Consensus 76 -~v~~LIyV~D~qs~~-~~~~l~~~~~~i~~l~~~---------------------------sp~~~v~vfiHK~D~l~- 125 (232)
T PF04670_consen 76 -NVGVLIYVFDAQSDD-YDEDLAYLSDCIEALRQY---------------------------SPNIKVFVFIHKMDLLS- 125 (232)
T ss_dssp -TESEEEEEEETT-ST-CHHHHHHHHHHHHHHHHH---------------------------STT-EEEEEEE-CCCS--
T ss_pred -ccCEEEEEEEccccc-HHHHHHHHHHHHHHHHHh---------------------------CCCCeEEEEEeecccCC-
Confidence 589999999998544 335666655554443321 23688999999999964
Q ss_pred CCcchhh----hhHHHHHHHHHHcC---CeEEEEeccCCCCHHHHHHHHHH
Q psy11649 191 LEPNKKR----IAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 191 ~d~e~r~----~i~~~lr~la~~~G---a~l~etSAK~~~nId~Lk~~I~~ 234 (890)
++.|. .+.+.+...+...+ +.++.||.-+..-.+..-..+..
T Consensus 126 --~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 126 --EDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDESLYEAWSKIVQK 174 (232)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCcHHHHHHHHHHHH
Confidence 23333 34455555666666 78999999996544444443333
No 245
>KOG0072|consensus
Probab=99.02 E-value=8.1e-10 Score=107.11 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.+.+++++|--|+|||+++.++.-. ....+||+|.. ..+...++ -+++|||++|+.+.+.++..| |. +
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfn--ve~v~yKN---Lk~~vwdLggqtSirPyWRcY----y~--d 85 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN--VETVPYKN---LKFQVWDLGGQTSIRPYWRCY----YA--D 85 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC--cccccccc---ccceeeEccCcccccHHHHHH----hc--c
Confidence 5789999999999999999998754 44667888833 21222222 279999999999999999998 33 6
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
.+++|+|+|.+|..++-.+=..++..+.+.- .-+.-++|++||.|...
T Consensus 86 t~avIyVVDssd~dris~a~~el~~mL~E~e-----------------------------Lq~a~llv~anKqD~~~--- 133 (182)
T KOG0072|consen 86 TDAVIYVVDSSDRDRISIAGVELYSMLQEEE-----------------------------LQHAKLLVFANKQDYSG--- 133 (182)
T ss_pred cceEEEEEeccchhhhhhhHHHHHHHhccHh-----------------------------hcCceEEEEeccccchh---
Confidence 8999999999998886111122222222110 01356899999999742
Q ss_pred cchhhhhHHH-----HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQC-----LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~-----lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.-..+. +.++..+ -..+|.+||.+|.|++...+++.+.+
T Consensus 134 ---~~t~~E~~~~L~l~~Lk~r-~~~Iv~tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 134 ---ALTRSEVLKMLGLQKLKDR-IWQIVKTSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred ---hhhHHHHHHHhChHHHhhh-eeEEEeeccccccCCcHHHHHHHHHH
Confidence 2111111 1222222 25799999999999999999998776
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.02 E-value=1.4e-09 Score=117.85 Aligned_cols=149 Identities=13% Similarity=0.056 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC------CCC--------------CccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDT------PKP--------------TLALEYIYARKSGKTVMKDICHLWELGSGTSR 96 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~------~kp--------------tigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~ 96 (890)
+|+++|.+|||||||+++|+...+. ... +.++...... ....+..+++|||||...+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~---~~~~~~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAP---LEWKGHKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEE---EEECCEEEEEEECcCHHHH
Confidence 4899999999999999999753211 000 1111111101 1112347999999998776
Q ss_pred hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
......+ ++ .+|++++|+|.++.... .....|. .+. ..++
T Consensus 78 ~~~~~~~----l~--~aD~~i~Vvd~~~g~~~-~~~~~~~-~~~--------------------------------~~~~ 117 (268)
T cd04170 78 VGETRAA----LR--AADAALVVVSAQSGVEV-GTEKLWE-FAD--------------------------------EAGI 117 (268)
T ss_pred HHHHHHH----HH--HCCEEEEEEeCCCCCCH-HHHHHHH-HHH--------------------------------HcCC
Confidence 5444444 11 38999999999987664 2222222 111 1368
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEE--eccCCCCHHHHHHHHHHH
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFH--SSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~et--SAK~~~nId~Lk~~I~~~ 235 (890)
|+++|+||+|+.. ......+..+...+|..++.+ ..+++.++..+.+.+...
T Consensus 118 p~iivvNK~D~~~-------~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~ 171 (268)
T cd04170 118 PRIIFINKMDRER-------ADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEK 171 (268)
T ss_pred CEEEEEECCccCC-------CCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCE
Confidence 9999999999852 122344556666667654444 467888877765555443
No 247
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.02 E-value=4e-09 Score=111.67 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=56.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccceeEEEEEEec-------cccceEEEEEEcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALEYIYARKSGK-------TVMKDICHLWELG 91 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvdY~f~~~~g~-------~~~k~~l~IwDlp 91 (890)
+|+++|..++|||||+.+|+...+.. ..++++.-........ ...+..+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999998632110 0111111110001111 0113489999999
Q ss_pred CCcchhhHHhhhhccccccccCcEEEEEEeCCCcCch
Q psy11649 92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSL 128 (890)
Q Consensus 92 G~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~ 128 (890)
|+..|......+ ++ .+|++|+|+|+++..+.
T Consensus 82 G~~~f~~~~~~~----l~--~aD~~ilVvD~~~g~~~ 112 (222)
T cd01885 82 GHVDFSSEVTAA----LR--LCDGALVVVDAVEGVCV 112 (222)
T ss_pred CccccHHHHHHH----HH--hcCeeEEEEECCCCCCH
Confidence 999887766665 12 49999999999987664
No 248
>PRK13351 elongation factor G; Reviewed
Probab=98.97 E-value=7.5e-09 Score=126.39 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=74.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC------C----------------CCCCccceeEEEEEEeccccceEEEEEEc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND------T----------------PKPTLALEYIYARKSGKTVMKDICHLWEL 90 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~------~----------------~kptigvdY~f~~~~g~~~~k~~l~IwDl 90 (890)
....+|+|+|..++|||||+++|+...+ . +..|+... +..... .+.++++|||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~--~~~~~~---~~~~i~liDt 80 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA--ATSCDW---DNHRINLIDT 80 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc--eEEEEE---CCEEEEEEEC
Confidence 3467999999999999999999985211 0 11122211 111111 2348999999
Q ss_pred CCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccc
Q psy11649 91 GSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGL 170 (890)
Q Consensus 91 pG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~l 170 (890)
||+..|...+..+ ++ .+|++|+|+|.++..+. .....|.. +.
T Consensus 81 PG~~df~~~~~~~----l~--~aD~~ilVvd~~~~~~~-~~~~~~~~-~~------------------------------ 122 (687)
T PRK13351 81 PGHIDFTGEVERS----LR--VLDGAVVVFDAVTGVQP-QTETVWRQ-AD------------------------------ 122 (687)
T ss_pred CCcHHHHHHHHHH----HH--hCCEEEEEEeCCCCCCH-HHHHHHHH-HH------------------------------
Confidence 9998876665555 12 48999999999997775 33333321 11
Q ss_pred ccCCCCcEEEEeecccCCC
Q psy11649 171 IRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 171 i~~l~IPiIVVgNK~Dl~~ 189 (890)
..++|+++|+||+|+..
T Consensus 123 --~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 123 --RYGIPRLIFINKMDRVG 139 (687)
T ss_pred --hcCCCEEEEEECCCCCC
Confidence 12689999999999863
No 249
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.96 E-value=4.5e-09 Score=107.69 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCcc-ceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhh-hccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLA-LEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLF-SSFSLTAQ 111 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~kptig-vdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~-r~~~~~~~ 111 (890)
.-.|+|+|++|+|||+|+.+|+.+.. .+|++ ++-.. ...........+.+.|+||+.+++. +.... .. .
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~--~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~-----~ 74 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT--VPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYL-----S 74 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-----B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHH-----G
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc--CCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhch-----h
Confidence 34699999999999999999998622 23322 11100 0001112223799999999998865 33331 11 1
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++.+||+|+|.+... .++..--+.+...+.... ....++|++|+|||.|++.
T Consensus 75 ~~k~IIfvvDSs~~~---~~~~~~Ae~Ly~iL~~~~-----------------------~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQ---KELRDVAEYLYDILSDTE-----------------------VQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp GEEEEEEEEETTTHH---HHHHHHHHHHHHHHHHHH-----------------------CCTT--EEEEEEE-TTSTT
T ss_pred hCCEEEEEEeCccch---hhHHHHHHHHHHHHHhhh-----------------------hccCCCCEEEEEeCccccc
Confidence 377999999987522 122222222222222100 1234799999999999975
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.95 E-value=6.2e-09 Score=119.58 Aligned_cols=148 Identities=18% Similarity=0.107 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------------------------CCCccceeEEEEEEeccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDTP-----------------------------------KPTLALEYIYARKSGKTV 80 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~~-----------------------------------kptigvdY~f~~~~g~~~ 80 (890)
.+|+++|..++|||||+.+|+...+.. .-+++++..+.... .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~---~ 77 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS---T 77 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc---c
Confidence 479999999999999999997532110 01112222111111 1
Q ss_pred cceEEEEEEcCCCcchhh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy11649 81 MKDICHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF 159 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~ 159 (890)
.+.++.++||||++.|.. +..... .+|++|+|+|.+....- ...+.|. .+
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~-------~aD~allVVda~~G~~~-qt~~~~~-~~-------------------- 128 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGAS-------TADLAVLLVDARKGVLE-QTRRHSY-IA-------------------- 128 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHh-------hCCEEEEEEECCCCCcc-ccHHHHH-HH--------------------
Confidence 234799999999877633 332222 49999999999875431 1111111 11
Q ss_pred cccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC---CeEEEEeccCCCCHHHH
Q psy11649 160 RTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 160 ~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G---a~l~etSAK~~~nId~L 228 (890)
..+++ ++++|+||+|+.. .+.+....+...+..+...++ ++++++||++|.|++++
T Consensus 129 ------------~~~~~~~iivviNK~D~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 129 ------------SLLGIRHVVLAVNKMDLVD-YDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred ------------HHcCCCcEEEEEEeccccc-chHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 11134 5889999999863 111122334455555555554 46999999999999863
No 251
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.94 E-value=4.4e-09 Score=122.12 Aligned_cols=157 Identities=14% Similarity=0.067 Sum_probs=98.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~ 80 (890)
...+|+++|..++|||||+-+|+...+ ....+++++..+... ..
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~---~~ 82 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF---ET 82 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe---cC
Confidence 367899999999999999998874211 001122232221111 11
Q ss_pred cceEEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy11649 81 MKDICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF 159 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~ 159 (890)
.+..+++.|+||+..|....... + .+|++|+|+|.++. .| +....|....+++..-
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~-------~aD~aIlVVda~~G-~~-e~g~~~~~qT~eh~~~-------------- 139 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTS-------QADCAVLIIDSTTG-GF-EAGISKDGQTREHALL-------------- 139 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhh-------hccEEEEEEEcccC-ce-ecccCCCchHHHHHHH--------------
Confidence 23489999999998875544444 3 49999999999872 22 2222222233333221
Q ss_pred cccccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649 160 RTADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR 227 (890)
Q Consensus 160 ~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~ 227 (890)
...+++| +||++||+|+.. +.+.+....+.++++.++.+.| ++++++||++|.|+.+
T Consensus 140 -----------~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 140 -----------AFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred -----------HHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 2234785 688999999751 1222233445677888888877 5699999999999854
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.94 E-value=9e-09 Score=124.51 Aligned_cols=149 Identities=16% Similarity=0.092 Sum_probs=89.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCC-------------CC----------------------CccceeEEEEEEec
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDTP-------------KP----------------------TLALEYIYARKSGK 78 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~-------------kp----------------------tigvdY~f~~~~g~ 78 (890)
..++|+++|.+++|||||+++|+...... .. +++++..+...
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~--- 99 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF--- 99 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE---
Confidence 35789999999999999999999732111 01 11112111111
Q ss_pred cccceEEEEEEcCCCcchhh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649 79 TVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE 157 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~ 157 (890)
...+.++.++||||.+.|.. +..... .+|++++|+|.+....- ........+.
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~-------~aD~~llVvda~~g~~~--~t~e~~~~~~----------------- 153 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGAS-------TADLAIILVDARKGVLT--QTRRHSFIAS----------------- 153 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHH-------hCCEEEEEEECCCCccc--cCHHHHHHHH-----------------
Confidence 11233789999999876532 222111 49999999999765321 1111111111
Q ss_pred cccccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHH
Q psy11649 158 HFRTADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKR 227 (890)
Q Consensus 158 ~~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~ 227 (890)
.++ .|++||+||+|+.. .+.+....+..+++.+...++. +++++||++|.|+++
T Consensus 154 ---------------~~~~~~iivvvNK~D~~~-~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 154 ---------------LLGIRHVVLAVNKMDLVD-YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ---------------HhCCCeEEEEEEeccccc-chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 113 46889999999863 1112233344556666666654 599999999999985
No 253
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.93 E-value=9.9e-09 Score=120.05 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=91.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------------------------CCCccceeEEEEEEec
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDTP-----------------------------------KPTLALEYIYARKSGK 78 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~-----------------------------------kptigvdY~f~~~~g~ 78 (890)
...+|+++|..++|||||+.+|+...... ..+++++..+....
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~-- 103 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS-- 103 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec--
Confidence 46899999999999999999998632110 01122332221111
Q ss_pred cccceEEEEEEcCCCcchhh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649 79 TVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE 157 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~ 157 (890)
..+.++.++||||+..|.. +.... . .+|++++|+|.+....- ...+.|. .+
T Consensus 104 -~~~~~i~~iDTPGh~~f~~~~~~~l-----~--~aD~allVVDa~~G~~~-qt~~~~~-l~------------------ 155 (474)
T PRK05124 104 -TEKRKFIIADTPGHEQYTRNMATGA-----S--TCDLAILLIDARKGVLD-QTRRHSF-IA------------------ 155 (474)
T ss_pred -cCCcEEEEEECCCcHHHHHHHHHHH-----h--hCCEEEEEEECCCCccc-cchHHHH-HH------------------
Confidence 1233799999999876532 22211 1 49999999999864321 0111111 00
Q ss_pred cccccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC----CeEEEEeccCCCCHHHHH
Q psy11649 158 HFRTADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG----ASLLFHSSLDPGLVKRTR 229 (890)
Q Consensus 158 ~~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G----a~l~etSAK~~~nId~Lk 229 (890)
..++ .|++||+||+|+.. .+.+....+..+++.+....+ ++++++||++|.|++++.
T Consensus 156 --------------~~lg~~~iIvvvNKiD~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 156 --------------TLLGIKHLVVAVNKMDLVD-YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred --------------HHhCCCceEEEEEeecccc-chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 0112 36899999999862 122223334445555555544 779999999999998764
No 254
>CHL00071 tufA elongation factor Tu
Probab=98.93 E-value=1.3e-08 Score=117.13 Aligned_cols=147 Identities=10% Similarity=0.007 Sum_probs=89.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC------------------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND------------------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS 95 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------------------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~ 95 (890)
..++|+++|.+++|||||+++|++... ....+++++-.+... .....++.+.||||...
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~---~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY---ETENRHYAHVDCPGHAD 87 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE---ccCCeEEEEEECCChHH
Confidence 468999999999999999999997311 111333333211111 11233788999999765
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP 175 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~ 175 (890)
|....... +. .+|++++|+|.+.... ......+..+ ..++
T Consensus 88 ~~~~~~~~----~~--~~D~~ilVvda~~g~~--~qt~~~~~~~--------------------------------~~~g 127 (409)
T CHL00071 88 YVKNMITG----AA--QMDGAILVVSAADGPM--PQTKEHILLA--------------------------------KQVG 127 (409)
T ss_pred HHHHHHHH----HH--hCCEEEEEEECCCCCc--HHHHHHHHHH--------------------------------HHcC
Confidence 52222111 11 4999999999987433 1222222211 1236
Q ss_pred Cc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCH
Q psy11649 176 VP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLV 225 (890)
Q Consensus 176 IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nI 225 (890)
+| +|+|.||+|+... .+..+.+..+++.+....+ ++++++||.+|.|+
T Consensus 128 ~~~iIvvvNK~D~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 128 VPNIVVFLNKEDQVDD--EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCEEEEEEEccCCCCH--HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 89 7789999999631 1122334456666666654 67999999998743
No 255
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.89 E-value=2.3e-08 Score=109.24 Aligned_cols=149 Identities=10% Similarity=0.089 Sum_probs=87.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCC------------CCCCccceeEEEEEEeccccceEEEEEEcCCCcch-----
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDT------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----- 96 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----- 96 (890)
..++|+|+|.+|+|||||+|+|++.... ..+|++++....... ......++.||||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~-~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIE-ENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEE-ECCEEEEEEEEecCCccccccchh
Confidence 3689999999999999999999985321 234444432111111 1112237999999994221
Q ss_pred --hhHHh-------h-----h---hccccccccCcEEEEEEeCCCcCchHHHHHHH-HHHHHHHHhhhhhhhhhcccccc
Q psy11649 97 --LEVAS-------L-----F---SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETF-LAKFRAIFESNESVREKRGSFEH 158 (890)
Q Consensus 97 --~~Li~-------~-----~---r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~w-lq~I~e~~~~ll~~~~~~~~l~~ 158 (890)
..+.. . . ++..+.-..+++++++++.+.. .+ ..| ++.++...
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l----~~~D~~~lk~l~--------------- 141 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GL----KPLDIEFMKRLS--------------- 141 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CC----CHHHHHHHHHHh---------------
Confidence 11111 0 0 1111211126777777776641 11 111 12222211
Q ss_pred ccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccC
Q psy11649 159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 221 (890)
Q Consensus 159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~ 221 (890)
. ++|+++|+||+|++. .++.....+.+++.+..+++.++......
T Consensus 142 --------------~-~v~vi~VinK~D~l~---~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 142 --------------K-RVNIIPVIAKADTLT---PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred --------------c-cCCEEEEEECCCcCC---HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 1 489999999999963 33455667778888899999988776533
No 256
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.89 E-value=2.9e-08 Score=117.40 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=70.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC------CC-----CCCc-----------cceeEEEEEEeccccceEEEEEEcC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND------TP-----KPTL-----------ALEYIYARKSGKTVMKDICHLWELG 91 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------~~-----kpti-----------gvdY~f~~~~g~~~~k~~l~IwDlp 91 (890)
...+|+|+|.+++|||||+++|+...+ .. ..+. |+.+.... ......+.++++||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~-~~~~~~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSV-MQFPYRDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeee-EEEEECCEEEEEEECC
Confidence 356899999999999999999974110 00 0001 11111100 1111223489999999
Q ss_pred CCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649 92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI 171 (890)
Q Consensus 92 G~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li 171 (890)
|+..|......+ ++ .+|++|+|+|.++.... ....+++..+
T Consensus 88 G~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~~--~t~~l~~~~~------------------------------- 128 (526)
T PRK00741 88 GHEDFSEDTYRT----LT--AVDSALMVIDAAKGVEP--QTRKLMEVCR------------------------------- 128 (526)
T ss_pred CchhhHHHHHHH----HH--HCCEEEEEEecCCCCCH--HHHHHHHHHH-------------------------------
Confidence 998776544434 12 49999999999885432 3333333221
Q ss_pred cCCCCcEEEEeecccCC
Q psy11649 172 RTFPVPLILIGGKYDLF 188 (890)
Q Consensus 172 ~~l~IPiIVVgNK~Dl~ 188 (890)
..++|+++++||+|+.
T Consensus 129 -~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 129 -LRDTPIFTFINKLDRD 144 (526)
T ss_pred -hcCCCEEEEEECCccc
Confidence 1268999999999975
No 257
>KOG0090|consensus
Probab=98.89 E-value=1.3e-08 Score=105.06 Aligned_cols=163 Identities=14% Similarity=0.199 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCcc-ceeEEEEEEeccc-cceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLA-LEYIYARKSGKTV-MKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptig-vdY~f~~~~g~~~-~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
..|+++|..+||||+|+.+|..+ .+.+|++ ++ ...+... +...+++.|+||+++++.-...+=.+++. +
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~g--s~~~TvtSie----pn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~---a 109 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITG--SHRGTVTSIE----PNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYS---A 109 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcC--CccCeeeeec----cceeeEeecCcceEEEeCCCcHHHHHHHHHHcccccc---c
Confidence 35999999999999999999886 2223332 00 0001001 11148999999999987666555122245 8
Q ss_pred cEEEEEEeCCC-cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 114 FTLVLMLDLSR-LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 114 d~IIIV~DlSn-p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
-+||+|+|..- +... .....++..+--... ...-++|++|+|||.|++..-.
T Consensus 110 kaiVFVVDSa~f~k~v-rdvaefLydil~~~~--------------------------~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNV-RDVAEFLYDILLDSR--------------------------VKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred eeEEEEEeccccchhh-HHHHHHHHHHHHhhc--------------------------cccCCCCEEEEecchhhhhcCc
Confidence 89999999765 3332 222222222211110 1123689999999999975322
Q ss_pred cch-hhhhHHHHHHHHH--------------------------------HcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 193 PNK-KRIAVQCLRYLAH--------------------------------VNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 193 ~e~-r~~i~~~lr~la~--------------------------------~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.+. |+....++..+-. ...+.+.++|++++ +++++.++|...
T Consensus 163 ~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 163 AEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 111 1111112211111 12345888888888 889988888654
No 258
>PLN03126 Elongation factor Tu; Provisional
Probab=98.89 E-value=1.8e-08 Score=117.73 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=92.2
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC------------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN------------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~------------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
....++|+++|..++|||||+++|++.. ++...+++++-.+.... ..+.++.++|+||+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~---~~~~~i~liDtPGh 154 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE---TENRHYAHVDCPGH 154 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe---cCCcEEEEEECCCH
Confidence 3446899999999999999999999521 11123333332221111 12337899999998
Q ss_pred cchhhHH-hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649 94 TSRLEVA-SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR 172 (890)
Q Consensus 94 ~~~~~Li-~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~ 172 (890)
..|..-. ...+ .+|++++|+|.++...- ....++..+ .
T Consensus 155 ~~f~~~~~~g~~-------~aD~ailVVda~~G~~~--qt~e~~~~~--------------------------------~ 193 (478)
T PLN03126 155 ADYVKNMITGAA-------QMDGAILVVSGADGPMP--QTKEHILLA--------------------------------K 193 (478)
T ss_pred HHHHHHHHHHHh-------hCCEEEEEEECCCCCcH--HHHHHHHHH--------------------------------H
Confidence 7763322 2222 38999999999875442 222222211 1
Q ss_pred CCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-----CCeEEEEeccCCCC
Q psy11649 173 TFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-----GASLLFHSSLDPGL 224 (890)
Q Consensus 173 ~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-----Ga~l~etSAK~~~n 224 (890)
..++| ++++.||+|+... .+..+.+..+++.+.... .++++++|+.++.|
T Consensus 194 ~~gi~~iIvvvNK~Dl~~~--~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 194 QVGVPNMVVFLNKQDQVDD--EELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HcCCCeEEEEEecccccCH--HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 23788 7889999998631 112344455677776664 46799999988753
No 259
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.89 E-value=4.3e-09 Score=108.58 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=88.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|++.|+..+..+... -.. ..-.+|||+|++.|+++ +.++.|+..++.+..
T Consensus 57 l~iwDt~G~~~~~~l~~~--~~~----~ad~illVfD~t~~~Sf-~~~~~w~~~i~~~~~-------------------- 109 (189)
T cd04121 57 LQLWDTSGQGRFCTIFRS--YSR----GAQGIILVYDITNRWSF-DGIDRWIKEIDEHAP-------------------- 109 (189)
T ss_pred EEEEeCCCcHHHHHHHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 489999999777766544 111 23489999999999999 889999988854210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
++|+||||||+|+... ...-...++.+|..+|...|.||+|+
T Consensus 110 ---------------------------------~~piilVGNK~DL~~~-----~~v~~~~~~~~a~~~~~~~~e~SAk~ 151 (189)
T cd04121 110 ---------------------------------GVPKILVGNRLHLAFK-----RQVATEQAQAYAERNGMTFFEVSPLC 151 (189)
T ss_pred ---------------------------------CCCEEEEEECccchhc-----cCCCHHHHHHHHHHcCCEEEEecCCC
Confidence 3799999999999632 12224458888999999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++.+|.-.++.
T Consensus 152 g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 152 NFNITESFTELARIVLM 168 (189)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887764
No 260
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.88 E-value=2.7e-08 Score=108.44 Aligned_cols=109 Identities=15% Similarity=0.031 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--------------------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND--------------------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~--------------------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~ 96 (890)
+|+++|.+|+|||||+++|+...+ ....+++++....... ..+.++++|||||...+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~---~~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF---WKDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE---ECCEEEEEEECCCcHHH
Confidence 489999999999999999974211 0112222221111111 12348999999998766
Q ss_pred hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
...+... ++ .+|++|+|+|.++...- ......+.+. ..++
T Consensus 78 ~~~~~~~----l~--~aD~ailVVDa~~g~~~--~t~~~~~~~~--------------------------------~~~~ 117 (270)
T cd01886 78 TIEVERS----LR--VLDGAVAVFDAVAGVEP--QTETVWRQAD--------------------------------RYNV 117 (270)
T ss_pred HHHHHHH----HH--HcCEEEEEEECCCCCCH--HHHHHHHHHH--------------------------------HcCC
Confidence 5444443 12 48999999999885442 2222222111 1268
Q ss_pred cEEEEeecccCC
Q psy11649 177 PLILIGGKYDLF 188 (890)
Q Consensus 177 PiIVVgNK~Dl~ 188 (890)
|+++++||+|+.
T Consensus 118 p~ivviNK~D~~ 129 (270)
T cd01886 118 PRIAFVNKMDRT 129 (270)
T ss_pred CEEEEEECCCCC
Confidence 999999999985
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.87 E-value=9.2e-08 Score=98.71 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-C---CCCccceeEEEEEEeccccceEEEEEEcCCCcchh----h----HHhhh
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDT-P---KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL----E----VASLF 103 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~-~---kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~----~----Li~~~ 103 (890)
.+|+|+|.+|||||||+|.+++.... . .++++.+....+... .+.++.++||||..... . +...+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~---~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW---DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE---CCeEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 37999999999999999999985321 1 122232211111111 23479999999975431 1 11111
Q ss_pred hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
.. .. .+++++++|+|+.+ .+ ..-...++.+++...+ ....++++|.|
T Consensus 78 ~~-~~--~g~~~illVi~~~~-~t--~~d~~~l~~l~~~fg~---------------------------~~~~~~ivv~T 124 (196)
T cd01852 78 SL-SA--PGPHAFLLVVPLGR-FT--EEEEQAVETLQELFGE---------------------------KVLDHTIVLFT 124 (196)
T ss_pred Hh-cC--CCCEEEEEEEECCC-cC--HHHHHHHHHHHHHhCh---------------------------HhHhcEEEEEE
Confidence 11 11 25899999999987 33 2333334444443221 11247899999
Q ss_pred cccCCCCCCcch-hhhhHHHHHHHHHHcCCeEEEEec-----cCCCCHHHHHHHHHHHHh
Q psy11649 184 KYDLFENLEPNK-KRIAVQCLRYLAHVNGASLLFHSS-----LDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 184 K~Dl~~d~d~e~-r~~i~~~lr~la~~~Ga~l~etSA-----K~~~nId~Lk~~I~~~lf 237 (890)
+.|.....+-+. .......++.+....|..++..+. ..+.++++|.+.|...+-
T Consensus 125 ~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 125 RGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred CccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 999764211111 111224566677776766655553 456788888888887764
No 262
>PRK00049 elongation factor Tu; Reviewed
Probab=98.87 E-value=4.1e-08 Score=112.54 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=96.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC------------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN------------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT 94 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~------------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~ 94 (890)
...++|+++|..++|||||+++|++.. ++...+++++..+.... ..+.++.+.||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~---~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE---TEKRHYAHVDCPGHA 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc---CCCeEEEEEECCCHH
Confidence 346899999999999999999998721 01134444443222211 123378999999986
Q ss_pred chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
.|..-.... . ..+|++++|+|.+....- .....+..+ ...
T Consensus 87 ~f~~~~~~~----~--~~aD~~llVVDa~~g~~~--qt~~~~~~~--------------------------------~~~ 126 (396)
T PRK00049 87 DYVKNMITG----A--AQMDGAILVVSAADGPMP--QTREHILLA--------------------------------RQV 126 (396)
T ss_pred HHHHHHHhh----h--ccCCEEEEEEECCCCCch--HHHHHHHHH--------------------------------HHc
Confidence 542222211 1 149999999999875332 222222221 123
Q ss_pred CCcEE-EEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCC----------CHHHHHHHHHHH
Q psy11649 175 PVPLI-LIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPG----------LVKRTRDILNHY 235 (890)
Q Consensus 175 ~IPiI-VVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~----------nId~Lk~~I~~~ 235 (890)
++|.+ ++.||+|+.. +.+..+.+..+++.+....| ++++++||+++. ++..|.++|...
T Consensus 127 g~p~iiVvvNK~D~~~--~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 127 GVPYIVVFLNKCDMVD--DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCCEEEEEEeecCCcc--hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 68976 5899999863 11112234445666655543 679999999875 356666666654
No 263
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.87 E-value=3.1e-08 Score=93.29 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=55.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhh-hcc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLF-SSF 106 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~-r~~ 106 (890)
+|+|+|.+|||||||+|+|++.. ....+..+....+..... ....+.++||||...-. .....+ +.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~- 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY---NNKKFILVDTPGINDGESQDNDGKEIRKFLEQ- 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE---TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee---ceeeEEEEeCCCCcccchhhHHHHHHHHHHHH-
Confidence 68999999999999999999842 122233333322211111 23367899999975321 122223 22
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHH
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKF 139 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I 139 (890)
.. .+|++++|+|.+++.. +.....++.+
T Consensus 77 ~~---~~d~ii~vv~~~~~~~--~~~~~~~~~l 104 (116)
T PF01926_consen 77 IS---KSDLIIYVVDASNPIT--EDDKNILREL 104 (116)
T ss_dssp HC---TESEEEEEEETTSHSH--HHHHHHHHHH
T ss_pred HH---HCCEEEEEEECCCCCC--HHHHHHHHHH
Confidence 12 4899999999887433 2344444433
No 264
>PTZ00258 GTP-binding protein; Provisional
Probab=98.86 E-value=3.3e-08 Score=112.37 Aligned_cols=238 Identities=11% Similarity=0.081 Sum_probs=125.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccc--------------cceEEEEEEcCCCcch
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTV--------------MKDICHLWELGSGTSR 96 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~--------------~k~~l~IwDlpG~~~~ 96 (890)
..++|.|||.||||||||+|+|++.. .++ |..+++........... ...++.+.|+||...-
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~-pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENF-PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCC-CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46799999999999999999998842 333 55554433322221100 0125899999996532
Q ss_pred ----hhHHhhh-hccccccccCcEEEEEEeCCCcCc---------hHHHHHHHHHH--------HHHHHhhhhhhh-h--
Q psy11649 97 ----LEVASLF-SSFSLTAQSGFTLVLMLDLSRLNS---------LWTEAETFLAK--------FRAIFESNESVR-E-- 151 (890)
Q Consensus 97 ----~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S---------~~~~L~~wlq~--------I~e~~~~ll~~~-~-- 151 (890)
..+...+ .. ++ .+|++++|+|...-.. -.+.++....+ +.+..+++.... .
T Consensus 99 a~~g~gLg~~fL~~--Ir--~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~ 174 (390)
T PTZ00258 99 ASEGEGLGNAFLSH--IR--AVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKK 174 (390)
T ss_pred CcchhHHHHHHHHH--HH--HCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccc
Confidence 2233333 11 22 4999999999852111 11222222121 222222111100 0
Q ss_pred -hc------ccc---cccccccccc---------cccccc----CCCCcEEEEeecc--cCCCCCCcchhhhhHHHHHHH
Q psy11649 152 -KR------GSF---EHFRTADEHR---------DKGLIR----TFPVPLILIGGKY--DLFENLEPNKKRIAVQCLRYL 206 (890)
Q Consensus 152 -~~------~~l---~~~~~~~~~~---------d~~li~----~l~IPiIVVgNK~--Dl~~d~d~e~r~~i~~~lr~l 206 (890)
.. ..+ ++. +.+..| +...+. ....|+++|+|+. |+... .. -..+.++.+
T Consensus 175 ~~~~~~~~~~~l~~v~~~-L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~----~~-~~~~~l~~~ 248 (390)
T PTZ00258 175 KKKEEKVELDVLKKVLEW-LEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQ----KN-KWLAKIKEW 248 (390)
T ss_pred chhhHHHHHHHHHHHHHH-HHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhccc----ch-HHHHHHHHH
Confidence 00 000 000 000001 111111 2358999999999 76210 11 134567777
Q ss_pred HHHc-CCeEEEEeccCCC-----------------------CHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccc
Q psy11649 207 AHVN-GASLLFHSSLDPG-----------------------LVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSV 262 (890)
Q Consensus 207 a~~~-Ga~l~etSAK~~~-----------------------nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~ 262 (890)
+..+ +..++.+||+-.. +++++.+....++ + .. -+-+.|.|..
T Consensus 249 ~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL-~----------li--~ffT~g~~e~ 315 (390)
T PTZ00258 249 VGEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLL-N----------LI--HFFTAGPDEV 315 (390)
T ss_pred HHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHh-C----------CE--EEEcCCCCce
Confidence 7777 4889999986554 4455544444332 1 11 0112233221
Q ss_pred cccccCCCCCCCCccccccccccccchhHHHhhccc
Q psy11649 263 ASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWI 298 (890)
Q Consensus 263 ~~I~~pl~r~~~~~~~~~~~~~~~~~~~f~~~~~w~ 298 (890)
..=+++++++..+.+..+|.++...|.++.+|-
T Consensus 316 ---raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~ 348 (390)
T PTZ00258 316 ---RCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMK 348 (390)
T ss_pred ---eEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECc
Confidence 111255677788888999999999999999973
No 265
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.84 E-value=1.2e-08 Score=106.80 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=93.6
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-++||+.+|+.....+... .+. ..-++|+|+|+|.|.++ +.++.|+..++.....
T Consensus 51 ~~~i~Dt~G~~~~~~l~~~--~~~----~ad~iilV~D~t~~~s~-~~~~~w~~~l~~~~~~------------------ 105 (215)
T cd04109 51 TLQVWDIGGQSIGGKMLDK--YIY----GAHAVFLVYDVTNSQSF-ENLEDWYSMVRKVLKS------------------ 105 (215)
T ss_pred EEEEEECCCcHHHHHHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhccc------------------
Confidence 3589999998766666665 222 22379999999999998 9999999998875442
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
. ..++|+|||+||+|+... .......++.+|..+|+..+++|+|
T Consensus 106 -------~------------------------~~~~piilVgNK~DL~~~-----~~v~~~~~~~~~~~~~~~~~~iSAk 149 (215)
T cd04109 106 -------S------------------------ETQPLVVLVGNKTDLEHN-----RTVKDDKHARFAQANGMESCLVSAK 149 (215)
T ss_pred -------c------------------------CCCceEEEEEECcccccc-----cccCHHHHHHHHHHcCCEEEEEECC
Confidence 0 014789999999999631 2233446778899999999999999
Q ss_pred ChhhHHHHHHHHhhhhcCCCC
Q psy11649 552 DPGLVKRTRDILNHYAFSSHL 572 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~~~ 572 (890)
.+.|++.++++|..++++.+.
T Consensus 150 tg~gv~~lf~~l~~~l~~~~~ 170 (215)
T cd04109 150 TGDRVNLLFQQLAAELLGVDL 170 (215)
T ss_pred CCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999998643
No 266
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.84 E-value=2.2e-08 Score=95.45 Aligned_cols=140 Identities=17% Similarity=0.112 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh--hccccccccC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF--SSFSLTAQSG 113 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~--r~~~~~~~~a 113 (890)
+|+++||..|+|||||+++|-|...-|+.|.+++|. . =-.+||||.+--...+... .. ..++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~--------d----~~~IDTPGEy~~~~~~Y~aL~tt----~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFN--------D----KGDIDTPGEYFEHPRWYHALITT----LQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccceeecc--------C----ccccCCchhhhhhhHHHHHHHHH----hhcc
Confidence 579999999999999999999988889999999863 1 1357899954221111111 11 1258
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|-.++++++.+ . ..+......|+|-|.+|.|+.+
T Consensus 66 dvi~~v~~and~~s~f---~----------------------------------p~f~~~~~k~vIgvVTK~DLae---- 104 (148)
T COG4917 66 DVIIYVHAANDPESRF---P----------------------------------PGFLDIGVKKVIGVVTKADLAE---- 104 (148)
T ss_pred ceeeeeecccCccccC---C----------------------------------cccccccccceEEEEecccccc----
Confidence 9999999999998740 0 1123334567999999999963
Q ss_pred chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHH
Q psy11649 194 NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.+-+ ...+++-.+-|+ ++|++|+.++.|+++|++++...
T Consensus 105 --d~dI-~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 105 --DADI-SLVKRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred --hHhH-HHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence 1122 334555556676 49999999999999999998654
No 267
>PLN03127 Elongation factor Tu; Provisional
Probab=98.83 E-value=8.7e-08 Score=111.40 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=94.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC------C------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK------N------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS 95 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~------~------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~ 95 (890)
..++|+++|..++|||||+++|++. . ++...+++++..+.... ..+.++.+.||||...
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~---~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE---TAKRHYAHVDCPGHAD 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc---CCCeEEEEEECCCccc
Confidence 3688999999999999999999731 1 11224555553322221 1233789999999876
Q ss_pred hhh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 96 RLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 96 ~~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
|.. +..... .+|++++|+|.++...- .....+.. ....
T Consensus 137 f~~~~~~g~~-------~aD~allVVda~~g~~~--qt~e~l~~--------------------------------~~~~ 175 (447)
T PLN03127 137 YVKNMITGAA-------QMDGGILVVSAPDGPMP--QTKEHILL--------------------------------ARQV 175 (447)
T ss_pred hHHHHHHHHh-------hCCEEEEEEECCCCCch--hHHHHHHH--------------------------------HHHc
Confidence 522 222211 39999999998875331 11111111 1224
Q ss_pred CCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-----CCeEEEEecc---CCCC-------HHHHHHHHHHHH
Q psy11649 175 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-----GASLLFHSSL---DPGL-------VKRTRDILNHYA 236 (890)
Q Consensus 175 ~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-----Ga~l~etSAK---~~~n-------Id~Lk~~I~~~l 236 (890)
++| +|+|.||+|+..+ .+..+.+..+++++...+ .++++++|+. ++.| +..|.+.|...+
T Consensus 176 gip~iIvviNKiDlv~~--~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 176 GVPSLVVFLNKVDVVDD--EELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCeEEEEEEeeccCCH--HHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 789 5789999998631 111222333455555443 2578888875 4555 667777776654
No 268
>KOG1490|consensus
Probab=98.82 E-value=1.4e-08 Score=115.26 Aligned_cols=165 Identities=17% Similarity=0.212 Sum_probs=106.5
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---eccccce-EEEEEEcCCCcch----hhHHhhh
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKTVMKD-ICHLWELGSGTSR----LEVASLF 103 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~~~k~-~l~IwDlpG~~~~----~~Li~~~ 103 (890)
.+...+++|+|.||||||||+|.++..+.... .|.|+++. |....+. ..++.||||.-.. ...+...
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevq-----pYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmq 239 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-----PYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ 239 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccC-----CcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHH
Confidence 34578999999999999999999887433221 25555555 5555555 8999999996321 1111111
Q ss_pred --h-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649 104 --S-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180 (890)
Q Consensus 104 --r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV 180 (890)
+ -..++ .+|+++.|+|....+ ++..-.+.. ..+..++. +.|+|+
T Consensus 240 sITALAHLr----aaVLYfmDLSe~CGy--Sva~QvkLf-hsIKpLFa--------------------------NK~~Il 286 (620)
T KOG1490|consen 240 IITALAHLR----SAVLYFMDLSEMCGY--SVAAQVKLY-HSIKPLFA--------------------------NKVTIL 286 (620)
T ss_pred HHHHHHHhh----hhheeeeechhhhCC--CHHHHHHHH-HHhHHHhc--------------------------CCceEE
Confidence 0 01122 479999999997665 444433322 22222221 479999
Q ss_pred EeecccCCC--CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 181 IGGKYDLFE--NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 181 VgNK~Dl~~--d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
|+||+|++. +++++.+ +.+..+...-+++++.+|+.+.+|+-.++..-+..++.
T Consensus 287 vlNK~D~m~~edL~~~~~----~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 287 VLNKIDAMRPEDLDQKNQ----ELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred EeecccccCccccCHHHH----HHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHH
Confidence 999999973 4444333 23444455556899999999999999888777666654
No 269
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.79 E-value=1.8e-08 Score=99.76 Aligned_cols=112 Identities=19% Similarity=0.329 Sum_probs=84.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+.+. .+. ....+|+|+|++.+.++ +.+++|++.++++..
T Consensus 54 ~~l~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------- 106 (165)
T cd01868 54 AQIWDTAGQERYRAITSA--YYR----GAVGALLVYDITKKQTF-ENVERWLKELRDHAD-------------------- 106 (165)
T ss_pred EEEEeCCChHHHHHHHHH--HHC----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 589999998766655554 222 12369999999999997 889999887765311
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|++|||||+|+... .......+..+|...|...+.+|++.
T Consensus 107 --------------------------------~~~pi~vv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~ 149 (165)
T cd01868 107 --------------------------------SNIVIMLVGNKSDLRHL-----RAVPTEEAKAFAEKNGLSFIETSALD 149 (165)
T ss_pred --------------------------------CCCeEEEEEECcccccc-----ccCCHHHHHHHHHHcCCEEEEEECCC
Confidence 14799999999998632 11123345566777899999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.+++.|..++|
T Consensus 150 ~~~v~~l~~~l~~~i~ 165 (165)
T cd01868 150 GTNVEEAFKQLLTEIY 165 (165)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999998876
No 270
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.78 E-value=6.4e-08 Score=112.53 Aligned_cols=152 Identities=13% Similarity=0.035 Sum_probs=93.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~ 80 (890)
...+|+++|..++|||||+.+|+...+ ....+++++..+... ..
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~---~~ 82 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF---ET 82 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE---cc
Confidence 468999999999999999999975210 011223333222221 11
Q ss_pred cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCc---h---HHHHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649 81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS---L---WTEAETFLAKFRAIFESNESVREKRG 154 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S---~---~~~L~~wlq~I~e~~~~ll~~~~~~~ 154 (890)
.+..++|+|+||+..|..-.... . ..+|++|+|+|.+...- + -...+.|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g----~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~----------------- 139 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITG----T--SQADVAILVVASTAGEFEAGISKDGQTREHALL----------------- 139 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHh----h--hhcCEEEEEEEcCCCceecccCCCccHHHHHHH-----------------
Confidence 23389999999987763322222 1 14999999999987430 0 011111211
Q ss_pred ccccccccccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649 155 SFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR 227 (890)
Q Consensus 155 ~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~ 227 (890)
...+++| +||+.||+|... +.+.+....+..+++.+....| ++++++|+.+|.|+.+
T Consensus 140 ----------------~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 140 ----------------AFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ----------------HHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2234787 678999999531 2233344555666776666554 5699999999999964
No 271
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.75 E-value=9.6e-08 Score=116.77 Aligned_cols=139 Identities=14% Similarity=0.018 Sum_probs=84.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCC------C--------------CCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDT------P--------------KPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~------~--------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
.-.+|+|+|.+|+|||||+++|+...+. . ..+++++..+.... ..+.++++|||||.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~---~~~~~i~liDTPG~ 85 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF---WKGHRINIIDTPGH 85 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE---ECCeEEEEEECCCC
Confidence 4568999999999999999999752110 0 12233332221111 12348999999999
Q ss_pred cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
..+...+... ++ .+|++|+|+|.++.... .....| +.+. .
T Consensus 86 ~~~~~~~~~~----l~--~~D~~ilVvda~~g~~~-~~~~~~-~~~~--------------------------------~ 125 (689)
T TIGR00484 86 VDFTVEVERS----LR--VLDGAVAVLDAVGGVQP-QSETVW-RQAN--------------------------------R 125 (689)
T ss_pred cchhHHHHHH----HH--HhCEEEEEEeCCCCCCh-hHHHHH-HHHH--------------------------------H
Confidence 8775544444 11 48999999999986553 222222 2111 1
Q ss_pred CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC----eEEEEeccCC
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA----SLLFHSSLDP 222 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga----~l~etSAK~~ 222 (890)
.++|+++|+||+|+.. .. ....+..+...++. ..+.+|+..+
T Consensus 126 ~~~p~ivviNK~D~~~----~~---~~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 126 YEVPRIAFVNKMDKTG----AN---FLRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred cCCCEEEEEECCCCCC----CC---HHHHHHHHHHHhCCCceeEEeccccCCC
Confidence 2689999999999852 11 12234444444443 2577787655
No 272
>KOG1191|consensus
Probab=98.72 E-value=4.5e-08 Score=111.42 Aligned_cols=167 Identities=18% Similarity=0.128 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-hhhHHhhh-----hc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-RLEVASLF-----SS 105 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-~~~Li~~~-----r~ 105 (890)
..+|+++|.||||||||+|.|.+.+ ..+.|+++-|-.-. .....+.++.+.||+|..+ -.+.+... +.
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea---~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEA---QVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhhee---EeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4899999999999999999999964 25567766552111 1123345899999999754 21122111 12
Q ss_pred cccccccCcEEEEEEeC--CCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 106 FSLTAQSGFTLVLMLDL--SRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~Dl--Snp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
... .+|++++|+|. +..++- ..+...++....-+ ...+ .....-|+++|.|
T Consensus 345 ~~~---~advi~~vvda~~~~t~sd-~~i~~~l~~~~~g~-----------------~~~~------~~~~~~~~i~~~n 397 (531)
T KOG1191|consen 345 RIE---RADVILLVVDAEESDTESD-LKIARILETEGVGL-----------------VVIV------NKMEKQRIILVAN 397 (531)
T ss_pred HHh---hcCEEEEEecccccccccc-hHHHHHHHHhccce-----------------EEEe------ccccccceEEEec
Confidence 222 49999999999 444332 12222222111100 0000 1113579999999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcC---C-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNG---A-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~G---a-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|.|+....+.... .. ..+... .| . ...++|++++++++.|...+.+..
T Consensus 398 k~D~~s~~~~~~~-~~---~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 398 KSDLVSKIPEMTK-IP---VVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred hhhccCccccccC-Cc---eecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 9999754331111 01 111111 11 1 356799999999999988887775
No 273
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.71 E-value=6.3e-08 Score=98.83 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=85.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..||+..|+..+..+... .+. ....+|||+|++.+.++ +.+ ++|+..++.+..
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~----~a~~~ilvyd~~~~~Sf-~~~~~~w~~~i~~~~~------------------- 104 (176)
T cd04133 51 LGLWDTAGQEDYNRLRPL--SYR----GADVFVLAFSLISRASY-ENVLKKWVPELRHYAP------------------- 104 (176)
T ss_pred EEEEECCCCccccccchh--hcC----CCcEEEEEEEcCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 389999999887776655 232 23489999999999999 555 789876643210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC-----hhHHHHHHHHHHHHHHHcCCc-e
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE-----PNKKRIAVQCLRYLAHVNGAS-L 545 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~-----~E~~d~Iq~~lR~fcl~yGAs-L 545 (890)
.+|+||||||+|+..+-. .+......+....+|..+|++ .
T Consensus 105 ----------------------------------~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 150 (176)
T cd04133 105 ----------------------------------NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY 150 (176)
T ss_pred ----------------------------------CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence 279999999999964210 011123466677889999985 8
Q ss_pred eEeccCChhhHHHHHHHHhhhh
Q psy11649 546 LFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 546 ~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
|-||+|++.|++.+++.+...+
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHH
Confidence 9999999999999999887654
No 274
>PRK12740 elongation factor G; Reviewed
Probab=98.70 E-value=1.5e-07 Score=114.82 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=66.3
Q ss_pred EcCCCCCHHHHHHHHHcCCC------CC--------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHH
Q psy11649 41 IGTKSVGKSTLVFRFLEKND------TP--------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVA 100 (890)
Q Consensus 41 VGd~nvGKSSLInrL~~~~~------~~--------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li 100 (890)
+|..++|||||+++|+...+ +. ..+++++..+..... .+..+++|||||...+....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~---~~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW---KGHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE---CCEEEEEEECCCcHHHHHHH
Confidence 69999999999999965211 00 123333322222221 23479999999997765444
Q ss_pred hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649 101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180 (890)
Q Consensus 101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV 180 (890)
..+ +. .+|++|+|+|.++..+. .....|. .+. ..++|+++
T Consensus 78 ~~~----l~--~aD~vllvvd~~~~~~~-~~~~~~~-~~~--------------------------------~~~~p~ii 117 (668)
T PRK12740 78 ERA----LR--VLDGAVVVVCAVGGVEP-QTETVWR-QAE--------------------------------KYGVPRII 117 (668)
T ss_pred HHH----HH--HhCeEEEEEeCCCCcCH-HHHHHHH-HHH--------------------------------HcCCCEEE
Confidence 444 11 38999999999987664 2222232 111 12689999
Q ss_pred EeecccCC
Q psy11649 181 IGGKYDLF 188 (890)
Q Consensus 181 VgNK~Dl~ 188 (890)
|+||+|+.
T Consensus 118 v~NK~D~~ 125 (668)
T PRK12740 118 FVNKMDRA 125 (668)
T ss_pred EEECCCCC
Confidence 99999985
No 275
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.70 E-value=1.6e-07 Score=109.22 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=98.2
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCC--CccceeEEEEE--------------Eecc-----------
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKP--TLALEYIYARK--------------SGKT----------- 79 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kp--tigvdY~f~~~--------------~g~~----------- 79 (890)
....+.|.++|.-..|||||+..|++.. +.... |+.+.|.+... ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3456899999999999999999999831 11122 22333332210 0000
Q ss_pred ---ccceEEEEEEcCCCcchh-hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649 80 ---VMKDICHLWELGSGTSRL-EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGS 155 (890)
Q Consensus 80 ---~~k~~l~IwDlpG~~~~~-~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~ 155 (890)
.....+.+.|+||.+.|. .++.... .+|++++|+|.++.... ......+..+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~-------~~D~alLVVda~~g~~~-~qT~ehl~i~---------------- 166 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAA-------VMDAALLLIAANESCPQ-PQTSEHLAAV---------------- 166 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHh-------hCCEEEEEEECCCCccc-hhhHHHHHHH----------------
Confidence 001268999999987662 2222222 48999999999874211 1111111111
Q ss_pred cccccccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHH---cCCeEEEEeccCCCCHHHHHHH
Q psy11649 156 FEHFRTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDI 231 (890)
Q Consensus 156 l~~~~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~ 231 (890)
..+++ |++||.||+|+.. .+......++++.+... .+++++++||++|.|++.|+++
T Consensus 167 ----------------~~lgi~~iIVvlNKiDlv~---~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~ 227 (460)
T PTZ00327 167 ----------------EIMKLKHIIILQNKIDLVK---EAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEY 227 (460)
T ss_pred ----------------HHcCCCcEEEEEecccccC---HHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHH
Confidence 11244 5899999999862 11222223344444333 3578999999999999999999
Q ss_pred HHHHH
Q psy11649 232 LNHYA 236 (890)
Q Consensus 232 I~~~l 236 (890)
|...+
T Consensus 228 L~~~l 232 (460)
T PTZ00327 228 ICTQI 232 (460)
T ss_pred HHhhC
Confidence 98654
No 276
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.69 E-value=9.8e-09 Score=96.28 Aligned_cols=115 Identities=17% Similarity=0.073 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT 115 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~ 115 (890)
+||+++|+.|||||||+.++......+.+++...+ +..+...+ ++ +++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-------------------------~~~~~~~~----~~--s~~~ 49 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-------------------------IDVYDPTS----YE--SFDV 49 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-------------------------hhhccccc----cC--CCCE
Confidence 48999999999999999999876655544422110 11111111 22 4789
Q ss_pred EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649 116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK 195 (890)
Q Consensus 116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~ 195 (890)
+++|||.++..++ +.+ |...+... ....+|.++++||.|+.+ +
T Consensus 50 ~~~v~~~~~~~s~-~~~--~~~~i~~~-----------------------------~k~dl~~~~~~nk~dl~~-----~ 92 (124)
T smart00010 50 VLQCWRVDDRDSA-DNK--NVPEVLVG-----------------------------NKSDLPILVGGNRDVLEE-----E 92 (124)
T ss_pred EEEEEEccCHHHH-HHH--hHHHHHhc-----------------------------CCCCCcEEEEeechhhHh-----h
Confidence 9999999999887 444 76544321 123578999999999832 2
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEeccCCCCHH
Q psy11649 196 KRIAVQCLRYLAHVNGASLLFHSSLDPGLVK 226 (890)
Q Consensus 196 r~~i~~~lr~la~~~Ga~l~etSAK~~~nId 226 (890)
+....+. +..++++|++++.|+.
T Consensus 93 ~~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 93 RQVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CcCCHHH--------HHHHHHHhCCCcchhh
Confidence 2222222 2234567899999884
No 277
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.69 E-value=5.6e-08 Score=97.15 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=85.5
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..||+..|...+..+... .+. ...++++|+|++.|.++ +.+..|+..++.+...
T Consensus 55 ~~i~Dt~G~~~~~~~~~~--~~~----~~d~il~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 108 (168)
T cd01866 55 LQIWDTAGQESFRSITRS--YYR----GAAGALLVYDITRRETF-NHLTSWLEDARQHSNS------------------- 108 (168)
T ss_pred EEEEECCCcHHHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCC-------------------
Confidence 479999998655544333 122 12369999999999987 8899999887764210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
++|+||||||.|+... ...-...++.+|.++|+..|.+|++.
T Consensus 109 ---------------------------------~~pvivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (168)
T cd01866 109 ---------------------------------NMTIMLIGNKCDLESR-----REVSYEEGEAFAKEHGLIFMETSAKT 150 (168)
T ss_pred ---------------------------------CCcEEEEEECcccccc-----cCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 3799999999999731 11122346778888999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.+++++.+++|.
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999874
No 278
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.68 E-value=6.7e-08 Score=100.88 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=83.5
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|+..+..+... -+. ...++|+|+|+|.+.++ +.++.|+..++....
T Consensus 51 l~iwDtaGqe~~~~l~~~--y~~----~ad~iIlVfDvtd~~Sf-~~l~~w~~~i~~~~~-------------------- 103 (202)
T cd04120 51 LQIWDTAGQERFNSITSA--YYR----SAKGIILVYDITKKETF-DDLPKWMKMIDKYAS-------------------- 103 (202)
T ss_pred EEEEeCCCchhhHHHHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 389999999776655443 122 23378999999999998 889999876543110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K 551 (890)
-++|+||||||+|+.. ..+.-......+|..+ |...|.||+|
T Consensus 104 --------------------------------~~~piilVgNK~DL~~-----~~~v~~~~~~~~a~~~~~~~~~etSAk 146 (202)
T cd04120 104 --------------------------------EDAELLLVGNKLDCET-----DREISRQQGEKFAQQITGMRFCEASAK 146 (202)
T ss_pred --------------------------------CCCcEEEEEECccccc-----ccccCHHHHHHHHHhcCCCEEEEecCC
Confidence 0379999999999863 1222234456777775 7888999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.+++.|...+..
T Consensus 147 tg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 147 DNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887753
No 279
>PRK12739 elongation factor G; Reviewed
Probab=98.68 E-value=3.2e-07 Score=112.30 Aligned_cols=112 Identities=14% Similarity=0.051 Sum_probs=71.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC------C--------------CCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND------T--------------PKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------~--------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
.-.+|+|+|..++|||||+++|+.... . ...+++++-....... .+.+++++||||.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~---~~~~i~liDTPG~ 83 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW---KGHRINIIDTPGH 83 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE---CCEEEEEEcCCCH
Confidence 457899999999999999999975211 0 1233444432222221 2348999999998
Q ss_pred cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
..|..-+... +. .+|++|+|+|.+....- .-...+..+ ..
T Consensus 84 ~~f~~e~~~a----l~--~~D~~ilVvDa~~g~~~--qt~~i~~~~--------------------------------~~ 123 (691)
T PRK12739 84 VDFTIEVERS----LR--VLDGAVAVFDAVSGVEP--QSETVWRQA--------------------------------DK 123 (691)
T ss_pred HHHHHHHHHH----HH--HhCeEEEEEeCCCCCCH--HHHHHHHHH--------------------------------HH
Confidence 7654433332 11 48999999999886442 112222111 11
Q ss_pred CCCcEEEEeecccCC
Q psy11649 174 FPVPLILIGGKYDLF 188 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~ 188 (890)
.++|+++++||+|+.
T Consensus 124 ~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 124 YGVPRIVFVNKMDRI 138 (691)
T ss_pred cCCCEEEEEECCCCC
Confidence 368999999999986
No 280
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.67 E-value=1e-07 Score=99.41 Aligned_cols=110 Identities=11% Similarity=0.153 Sum_probs=84.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+..|+..+..+... .+.. .-++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 46 l~iwDt~G~e~~~~l~~~--~~~~----ad~~ilV~D~t~~~S~-~~i~~w~~~i~~~~~-------------------- 98 (200)
T smart00176 46 FNVWDTAGQEKFGGLRDG--YYIQ----GQCAIIMFDVTARVTY-KNVPNWHRDLVRVCE-------------------- 98 (200)
T ss_pred EEEEECCCchhhhhhhHH--HhcC----CCEEEEEEECCChHHH-HHHHHHHHHHHHhCC--------------------
Confidence 489999999766655443 1222 2378999999999999 888999988865211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
++|+||||||+|+-...-.+ +.+ .+|...++..|.||+|.
T Consensus 99 ---------------------------------~~piilvgNK~Dl~~~~v~~------~~~-~~~~~~~~~~~e~SAk~ 138 (200)
T smart00176 99 ---------------------------------NIPIVLCGNKVDVKDRKVKA------KSI-TFHRKKNLQYYDISAKS 138 (200)
T ss_pred ---------------------------------CCCEEEEEECcccccccCCH------HHH-HHHHHcCCEEEEEeCCC
Confidence 37999999999985321111 112 57888999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++++|...++.
T Consensus 139 ~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 139 NYNFEKPFLWLARKLIG 155 (200)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999875
No 281
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.66 E-value=2.2e-07 Score=99.75 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-------hhhHHhhhhccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-------RLEVASLFSSFS 107 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-------~~~Li~~~r~~~ 107 (890)
..+|+++|..|+|||||+|+|..+....-..+++.-...+..-...+...+.+||+||... ++.+...+ -
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~---l 115 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY---L 115 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH---h
Confidence 5789999999999999999999754332222221100001111111123699999999654 33333333 1
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
. ..|.++++.|..++.-- -....|.+.+.. ....|+++|.|.+|.
T Consensus 116 ~---~~DLvL~l~~~~draL~-~d~~f~~dVi~~-------------------------------~~~~~~i~~VtQ~D~ 160 (296)
T COG3596 116 P---KLDLVLWLIKADDRALG-TDEDFLRDVIIL-------------------------------GLDKRVLFVVTQADR 160 (296)
T ss_pred h---hccEEEEeccCCCcccc-CCHHHHHHHHHh-------------------------------ccCceeEEEEehhhh
Confidence 1 38899999999886432 122333332211 123699999999998
Q ss_pred CCC----------CCcchhhhhHHHHHHHHHHc--CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 188 FEN----------LEPNKKRIAVQCLRYLAHVN--GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 188 ~~d----------~d~e~r~~i~~~lr~la~~~--Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+- .++..++.+.+....+.+.. --++++.|.+.+-|++.|-.++...+
T Consensus 161 a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 161 AEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred hccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 642 12334555555444443332 23678888899999999988777765
No 282
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.66 E-value=1.1e-07 Score=98.33 Aligned_cols=118 Identities=14% Similarity=0.256 Sum_probs=88.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|++.|+..+..+... .+. ...++|+|+|++.|.++ +.++.|+..++..+.-
T Consensus 52 l~l~Dt~G~~~~~~~~~~--~~~----~a~~~ilv~D~t~~~s~-~~~~~~~~~i~~~~~~------------------- 105 (201)
T cd04107 52 LQLWDIAGQERFGGMTRV--YYR----GAVGAIIVFDVTRPSTF-EAVLKWKADLDSKVTL------------------- 105 (201)
T ss_pred EEEEECCCchhhhhhHHH--HhC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhcc-------------------
Confidence 489999999776665544 222 12379999999999998 8899998887654431
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K 551 (890)
+ ....+|+||||||+|+.. +.......++.+|..+| ...|.||+|
T Consensus 106 ----------~-------------------~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~e~Sak 151 (201)
T cd04107 106 ----------P-------------------NGEPIPCLLLANKCDLKK-----RLAKDGEQMDQFCKENGFIGWFETSAK 151 (201)
T ss_pred ----------c-------------------CCCCCcEEEEEECCCccc-----ccccCHHHHHHHHHHcCCceEEEEeCC
Confidence 0 001489999999999973 11222345677888899 689999999
Q ss_pred ChhhHHHHHHHHhhhhcCC
Q psy11649 552 DPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~ 570 (890)
.+.|++.+++.|...++..
T Consensus 152 ~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 152 EGINIEEAMRFLVKNILAN 170 (201)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998863
No 283
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.65 E-value=9.6e-08 Score=93.88 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=87.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+++|+..|...+..+.+. .+. ...++|+|+|+++|.++ +.++.|+..+..+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~----~~d~~ilv~D~~~~~s~-~~~~~~~~~~~~~~~~------------------- 104 (168)
T cd04119 51 VNFFDLSGHPEYLEVRNE--FYK----DTQGVLLVYDVTDRQSF-EALDSWLKEMKQEGGP------------------- 104 (168)
T ss_pred EEEEECCccHHHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HhHHHHHHHHHHhccc-------------------
Confidence 489999998666655554 222 12379999999999987 8899999888765432
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
+ ....++|+|+|+||+|+.... ..-....+.+|..+|...|.+|++.
T Consensus 105 -----------------------~-----~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (168)
T cd04119 105 -----------------------H-----GNMENIVVVVCANKIDLTKHR-----AVSEDEGRLWAESKGFKYFETSACT 151 (168)
T ss_pred -----------------------c-----ccCCCceEEEEEEchhccccc-----ccCHHHHHHHHHHcCCeEEEEECCC
Confidence 0 012358999999999997311 1123445667888999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.+++.|...++
T Consensus 152 ~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 152 GEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988765
No 284
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.65 E-value=7.8e-08 Score=94.74 Aligned_cols=112 Identities=15% Similarity=0.258 Sum_probs=87.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+.+. .+.. ..++|+|+|++.+.++ +.+.+|+..++.+..
T Consensus 50 l~i~D~~g~~~~~~~~~~--~~~~----~~~~ii~fd~~~~~S~-~~~~~~~~~i~~~~~-------------------- 102 (162)
T PF00071_consen 50 LEIWDTSGQERFDSLRDI--FYRN----SDAIIIVFDVTDEESF-ENLKKWLEEIQKYKP-------------------- 102 (162)
T ss_dssp EEEEEETTSGGGHHHHHH--HHTT----ESEEEEEEETTBHHHH-HTHHHHHHHHHHHST--------------------
T ss_pred cccccccccccccccccc--cccc----cccccccccccccccc-ccccccccccccccc--------------------
Confidence 389999998766665554 1221 2379999999999999 889999998776332
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|+||||||+|+-. ....-.+.++.+|.++|+..+-+|+|+
T Consensus 103 --------------------------------~~~~iivvg~K~D~~~-----~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 145 (162)
T PF00071_consen 103 --------------------------------EDIPIIVVGNKSDLSD-----EREVSVEEAQEFAKELGVPYFEVSAKN 145 (162)
T ss_dssp --------------------------------TTSEEEEEEETTTGGG-----GSSSCHHHHHHHHHHTTSEEEEEBTTT
T ss_pred --------------------------------ccccceeeeccccccc-----cccchhhHHHHHHHHhCCEEEEEECCC
Confidence 1379999999999885 112223457889999999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|+..++..+.+.+.
T Consensus 146 ~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 146 GENVKEIFQELIRKIL 161 (162)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 285
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.65 E-value=8.5e-08 Score=97.80 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=81.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHH-HHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTE-AETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~s-L~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.++|+..|+..+..+... ... ....+|+|+|++.|.++ +. +++|+..++++..
T Consensus 51 l~iwDt~G~~~~~~~~~~--~~~----~a~~~ilvfdit~~~Sf-~~~~~~w~~~i~~~~~------------------- 104 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPL--CYP----DSDAVLICFDISRPETL-DSVLKKWRGEIQEFCP------------------- 104 (178)
T ss_pred EEEEECCCchhhhhcchh--hcC----CCCEEEEEEECCChhhH-HHHHHHHHHHHHHHCC-------------------
Confidence 489999999766654444 111 22379999999999999 66 5899887754210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh------h-HHHHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP------N-KKRIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~------E-~~d~Iq~~lR~fcl~yGA- 543 (890)
.+|+||||||+|+..+... . +...-......||.++||
T Consensus 105 ----------------------------------~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~ 150 (178)
T cd04131 105 ----------------------------------NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE 150 (178)
T ss_pred ----------------------------------CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCC
Confidence 2689999999998642110 0 011234578899999998
Q ss_pred ceeEeccCChhh-HHHHHHHHhh
Q psy11649 544 SLLFHSSLDPGL-VKRTRDILNH 565 (890)
Q Consensus 544 sL~ftS~K~~~n-~~~l~kyi~h 565 (890)
..|.||+|.+.| ++.++..+.-
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHH
Confidence 689999999996 9998887765
No 286
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.64 E-value=3.2e-07 Score=108.69 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=70.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHc--CCCC----C------CCC----------ccceeEEEEEEeccccceEEEEEEcC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLE--KNDT----P------KPT----------LALEYIYARKSGKTVMKDICHLWELG 91 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~--~~~~----~------kpt----------igvdY~f~~~~g~~~~k~~l~IwDlp 91 (890)
..++|+|+|.+++|||||+++|+. +... . ..+ .|+.+.... ......+.++++||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~-~~~~~~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSV-MQFPYRDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEE-EEEeeCCeEEEEEECC
Confidence 356899999999999999999863 1100 0 001 111111111 1111224489999999
Q ss_pred CCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649 92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI 171 (890)
Q Consensus 92 G~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li 171 (890)
|+..|....... ++ .+|++|+|+|.++... .....+++..+.
T Consensus 89 G~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~--~~t~~l~~~~~~------------------------------ 130 (527)
T TIGR00503 89 GHEDFSEDTYRT----LT--AVDNCLMVIDAAKGVE--TRTRKLMEVTRL------------------------------ 130 (527)
T ss_pred ChhhHHHHHHHH----HH--hCCEEEEEEECCCCCC--HHHHHHHHHHHh------------------------------
Confidence 997765433333 12 4999999999988533 244444432211
Q ss_pred cCCCCcEEEEeecccCC
Q psy11649 172 RTFPVPLILIGGKYDLF 188 (890)
Q Consensus 172 ~~l~IPiIVVgNK~Dl~ 188 (890)
.++|+++++||+|+.
T Consensus 131 --~~~PiivviNKiD~~ 145 (527)
T TIGR00503 131 --RDTPIFTFMNKLDRD 145 (527)
T ss_pred --cCCCEEEEEECcccc
Confidence 258999999999984
No 287
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.64 E-value=9.7e-08 Score=94.99 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=84.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|+..+..+... .+. ...++|+|+|++.|.++ +.++.|+..++....
T Consensus 53 l~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~-------------------- 105 (166)
T cd04122 53 LQIWDTAGQERFRAVTRS--YYR----GAAGALMVYDITRRSTY-NHLSSWLTDARNLTN-------------------- 105 (166)
T ss_pred EEEEECCCcHHHHHHHHH--Hhc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 389999998766655443 122 23489999999999988 888999876543110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-.+|+||||||+|+.... ......++.+|..+++..+.||++.
T Consensus 106 --------------------------------~~~~iiiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~ 148 (166)
T cd04122 106 --------------------------------PNTVIFLIGNKADLEAQR-----DVTYEEAKQFADENGLLFLECSAKT 148 (166)
T ss_pred --------------------------------CCCeEEEEEECccccccc-----CcCHHHHHHHHHHcCCEEEEEECCC
Confidence 037899999999996431 1223456677888999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++.-+.+.+|.
T Consensus 149 ~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 149 GENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999888864
No 288
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.63 E-value=1e-07 Score=93.70 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=84.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+++|...+..+... .+.. .-++|+|+|+++|+++ +.+..|++.+..+..
T Consensus 51 ~~l~D~~G~~~~~~~~~~--~~~~----~d~~ilv~d~~~~~s~-~~~~~~l~~~~~~~~-------------------- 103 (164)
T smart00175 51 LQIWDTAGQERFRSITSS--YYRG----AVGALLVYDITNRESF-ENLKNWLKELREYAD-------------------- 103 (164)
T ss_pred EEEEECCChHHHHHHHHH--HhCC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 589999998766655555 2322 2289999999999998 888889887766421
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|+|||+||+|+....+ .-...++.+|.++|+..+.+|++.
T Consensus 104 --------------------------------~~~pivvv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~ 146 (164)
T smart00175 104 --------------------------------PNVVIMLVGNKSDLEDQRQ-----VSREEAEAFAEEHGLPFFETSAKT 146 (164)
T ss_pred --------------------------------CCCeEEEEEEchhcccccC-----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence 0489999999999764211 112234567888999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.+++.++..|..+++
T Consensus 147 ~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 147 NTNVEEAFEELAREIL 162 (164)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 289
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.62 E-value=1.2e-06 Score=92.99 Aligned_cols=140 Identities=18% Similarity=0.196 Sum_probs=82.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
.....|+|+|.+|+|||||++.+++.... .....| .+. ... ..+.++.++|+||.. ..+.....
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~--i~~---~~~~~i~~vDtPg~~--~~~l~~ak------ 102 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT--VVT---GKKRRLTFIECPNDI--NAMIDIAK------ 102 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE--EEe---cCCceEEEEeCCchH--HHHHHHHH------
Confidence 34577999999999999999999874211 111111 010 111 123478999999853 33333332
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE-EEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI-LIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI-VVgNK~Dl~~ 189 (890)
.+|++++|+|.+..... ....++..+. ..++|.+ +|.||+|+..
T Consensus 103 -~aDvVllviDa~~~~~~--~~~~i~~~l~--------------------------------~~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 103 -VADLVLLLIDASFGFEM--ETFEFLNILQ--------------------------------VHGFPRVMGVLTHLDLFK 147 (225)
T ss_pred -hcCEEEEEEecCcCCCH--HHHHHHHHHH--------------------------------HcCCCeEEEEEeccccCC
Confidence 38999999999875543 2222222111 1257754 5999999863
Q ss_pred CCCcchhhhhHHHHHH-HHHH--cCCeEEEEeccCCC
Q psy11649 190 NLEPNKKRIAVQCLRY-LAHV--NGASLLFHSSLDPG 223 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~-la~~--~Ga~l~etSAK~~~ 223 (890)
+ .+...-....+++ +... -+.+++++||+++-
T Consensus 148 ~--~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 148 K--NKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred c--HHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 1 1112222334433 3322 25789999999874
No 290
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.62 E-value=1.2e-07 Score=97.35 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=82.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.+||+..|+..+..+... .+. ...++|||+|+|++.++ +.+ +.|...++++..
T Consensus 55 l~iwDtaG~e~~~~~~~~--~~~----~ad~~ilvyDit~~~Sf-~~~~~~w~~~i~~~~~------------------- 108 (182)
T cd04172 55 LSLWDTSGSPYYDNVRPL--SYP----DSDAVLICFDISRPETL-DSVLKKWKGEIQEFCP------------------- 108 (182)
T ss_pred EEEEECCCchhhHhhhhh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHCC-------------------
Confidence 489999999776665444 122 22378999999999999 654 899887765311
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh------hH-HHHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP------NK-KRIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~------E~-~d~Iq~~lR~fcl~yGA- 543 (890)
.+|+||||||+|+-.+... +. ...-.+....+|.++||
T Consensus 109 ----------------------------------~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 154 (182)
T cd04172 109 ----------------------------------NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAA 154 (182)
T ss_pred ----------------------------------CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence 2689999999998542211 00 11234568899999997
Q ss_pred ceeEeccCChhh-HHHHHHHHhhh
Q psy11649 544 SLLFHSSLDPGL-VKRTRDILNHY 566 (890)
Q Consensus 544 sL~ftS~K~~~n-~~~l~kyi~hr 566 (890)
..+.||+|.+.| ++.++..+.-.
T Consensus 155 ~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 155 TYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEEECCcCCCCCCHHHHHHHHHHH
Confidence 789999999999 99988877653
No 291
>PRK13768 GTPase; Provisional
Probab=98.61 E-value=3.6e-07 Score=98.69 Aligned_cols=121 Identities=14% Similarity=0.049 Sum_probs=70.7
Q ss_pred EEEEEEcCCCcchh---hHHhhh-hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649 84 ICHLWELGSGTSRL---EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEH 158 (890)
Q Consensus 84 ~l~IwDlpG~~~~~---~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~ 158 (890)
.+.+||+||+.++. .....+ +. +....++++++|+|.+...+..+ ....|+....+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~--l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~---------------- 159 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVER--LSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL---------------- 159 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHH--HHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH----------------
Confidence 57899999987642 233333 11 11001789999999977554312 112222211110
Q ss_pred ccccccccccccccCCCCcEEEEeecccCCCCCCcchh-hhhH-----------------HHHHHH---HHHcC--CeEE
Q psy11649 159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKK-RIAV-----------------QCLRYL---AHVNG--ASLL 215 (890)
Q Consensus 159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r-~~i~-----------------~~lr~l---a~~~G--a~l~ 215 (890)
..++|+++|+||+|+....+.+.. +.+. ...+.+ ....+ .+++
T Consensus 160 --------------~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi 225 (253)
T PRK13768 160 --------------RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVI 225 (253)
T ss_pred --------------HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEE
Confidence 126899999999998642111110 1011 001112 22334 5789
Q ss_pred EEeccCCCCHHHHHHHHHHHH
Q psy11649 216 FHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 216 etSAK~~~nId~Lk~~I~~~l 236 (890)
++|++++.|++++.++|...+
T Consensus 226 ~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 226 PVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred EEECCCCcCHHHHHHHHHHHc
Confidence 999999999999999999887
No 292
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.60 E-value=1.4e-07 Score=96.80 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=85.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+..|+..+..+... .+.. ..++|+|+|++.+.++ +.++.|+..++++..
T Consensus 52 ~~i~Dt~G~~~~~~~~~~--~~~~----ad~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~-------------------- 104 (191)
T cd04112 52 LQIWDTAGQERFRSVTHA--YYRD----AHALLLLYDITNKASF-DNIRAWLTEIKEYAQ-------------------- 104 (191)
T ss_pred EEEEeCCCcHHHHHhhHH--HccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 479999998665554433 1221 2378999999999988 888889887765211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|++|||||+|+... .......++.++..+|...+.+|++.
T Consensus 105 --------------------------------~~~piiiv~NK~Dl~~~-----~~~~~~~~~~l~~~~~~~~~e~Sa~~ 147 (191)
T cd04112 105 --------------------------------EDVVIMLLGNKADMSGE-----RVVKREDGERLAKEYGVPFMETSAKT 147 (191)
T ss_pred --------------------------------CCCcEEEEEEcccchhc-----cccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 14899999999998731 11112346677888999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCC
Q psy11649 553 PGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~ 571 (890)
+.|++.++.+|..++.+-+
T Consensus 148 ~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 148 GLNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999887654
No 293
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.60 E-value=1.3e-07 Score=94.20 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=85.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|++.|+..+..+.+. .+. ..-++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 54 l~l~D~~g~~~~~~~~~~--~~~----~ad~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 106 (167)
T cd01867 54 LQIWDTAGQERFRTITTA--YYR----GAMGIILVYDITDEKSF-ENIRNWMRNIEEHAS-------------------- 106 (167)
T ss_pred EEEEeCCchHHHHHHHHH--HhC----CCCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC--------------------
Confidence 589999998776665544 222 22389999999999987 889999988765311
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|++|||||+|+...- +.-.+.++.++..++...+.+|++.
T Consensus 107 --------------------------------~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 149 (167)
T cd01867 107 --------------------------------EDVERMLVGNKCDMEEKR-----VVSKEEGEALADEYGIKFLETSAKA 149 (167)
T ss_pred --------------------------------CCCcEEEEEECccccccc-----CCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 147999999999997421 1112336667788899999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|.-+++.
T Consensus 150 ~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 150 NINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999877653
No 294
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.60 E-value=1.4e-07 Score=98.68 Aligned_cols=134 Identities=17% Similarity=0.216 Sum_probs=98.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|+..+..+... .+.. .-.+++|+|++.|.++ +.+.+|+..+..+...
T Consensus 54 l~i~Dt~G~~~~~~~~~~--~~~~----~d~iilv~D~~~~~Sf-~~l~~~~~~i~~~~~~------------------- 107 (211)
T cd04111 54 LQLWDTAGQERFRSITRS--YYRN----SVGVLLVFDITNRESF-EHVHDWLEEARSHIQP------------------- 107 (211)
T ss_pred EEEEeCCcchhHHHHHHH--HhcC----CcEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 589999998665554433 1221 2368999999999988 8888898866542211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-.+|+||||||+|+... ...-......+|..+|...+-||+|+
T Consensus 108 --------------------------------~~~~iilvgNK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sak~ 150 (211)
T cd04111 108 --------------------------------HRPVFILVGHKCDLESQ-----RQVTREEAEKLAKDLGMKYIETSART 150 (211)
T ss_pred --------------------------------CCCeEEEEEEccccccc-----cccCHHHHHHHHHHhCCEEEEEeCCC
Confidence 13688999999998742 11112335667888999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCcccccc
Q psy11649 553 PGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIE 597 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~ 597 (890)
+.|++.+++.|...++.. ..+.++..+.||++.++=+
T Consensus 151 g~~v~e~f~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 187 (211)
T cd04111 151 GDNVEEAFELLTQEIYER--------IKRGELCALDGWDGVKSGF 187 (211)
T ss_pred CCCHHHHHHHHHHHHHHH--------hhcCCCCccccccccccCC
Confidence 999999999999988764 3455788999998876433
No 295
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=4.8e-07 Score=104.57 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
.=|.++|----|||||+..+-+..- .+-..+| .|. -..... ....+.+.||||++.|..+..-= . -
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIG-A~~--v~~~~~-~~~~itFiDTPGHeAFt~mRaRG--a-~- 77 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG-AYQ--VPLDVI-KIPGITFIDTPGHEAFTAMRARG--A-S- 77 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEee-eEE--EEeccC-CCceEEEEcCCcHHHHHHHHhcC--C-c-
Confidence 3489999999999999999876321 1112222 111 111100 12279999999999887776433 0 1
Q ss_pred cccCcEEEEEEeCCC---cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 110 AQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 110 ~~~ad~IIIV~DlSn---p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
=+|++|+|+|+.+ |.+. +.+.. ....++|++|+.||+|
T Consensus 78 --vtDIaILVVa~dDGv~pQTi--------EAI~h-----------------------------ak~a~vP~iVAiNKiD 118 (509)
T COG0532 78 --VTDIAILVVAADDGVMPQTI--------EAINH-----------------------------AKAAGVPIVVAINKID 118 (509)
T ss_pred --cccEEEEEEEccCCcchhHH--------HHHHH-----------------------------HHHCCCCEEEEEeccc
Confidence 2799999999988 4333 11111 1234799999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..+. +++.-....++.--.+..+| ..++++||++|.|+++|.++|.-..
T Consensus 119 k~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 119 KPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 9632 22221111111122334454 5699999999999999988886543
No 296
>PLN03110 Rab GTPase; Provisional
Probab=98.59 E-value=1.3e-07 Score=99.34 Aligned_cols=114 Identities=17% Similarity=0.289 Sum_probs=87.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+..|+..+..+... .+. ....+++|+|++.+.++ +.++.|+..++.+..
T Consensus 63 l~l~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~-------------------- 115 (216)
T PLN03110 63 AQIWDTAGQERYRAITSA--YYR----GAVGALLVYDITKRQTF-DNVQRWLRELRDHAD-------------------- 115 (216)
T ss_pred EEEEECCCcHHHHHHHHH--HhC----CCCEEEEEEECCChHHH-HHHHHHHHHHHHhCC--------------------
Confidence 489999999766665444 222 23479999999999987 899999887765321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+||||||+|+... .+.-...++.++..+|...+.||++.
T Consensus 116 --------------------------------~~~piiiv~nK~Dl~~~-----~~~~~~~~~~l~~~~~~~~~e~SA~~ 158 (216)
T PLN03110 116 --------------------------------SNIVIMMAGNKSDLNHL-----RSVAEEDGQALAEKEGLSFLETSALE 158 (216)
T ss_pred --------------------------------CCCeEEEEEEChhcccc-----cCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 14899999999998532 11222335677888999999999999
Q ss_pred hhhHHHHHHHHhhhhcCC
Q psy11649 553 PGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~ 570 (890)
+.|++.+++.|...++..
T Consensus 159 g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 159 ATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999999874
No 297
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.59 E-value=1.6e-07 Score=100.22 Aligned_cols=118 Identities=20% Similarity=0.241 Sum_probs=85.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
++||+..|+..+..+... .+. ....+|+|+|+|.+.++-+.+..|+..++.+..
T Consensus 63 l~iwDTaG~e~~~~~~~~--~~~----~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-------------------- 116 (232)
T cd04174 63 LSLWDTSGSPYYDNVRPL--CYS----DSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-------------------- 116 (232)
T ss_pred EEEEeCCCchhhHHHHHH--HcC----CCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC--------------------
Confidence 589999999766654443 122 233799999999999994446899877654210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh------h-HHHHHHHHHHHHHHHcCC-c
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP------N-KKRIAVQCLRYLAHVNGA-S 544 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~------E-~~d~Iq~~lR~fcl~yGA-s 544 (890)
++|+||||||+|+-.+... . +...-......||.++|+ .
T Consensus 117 ---------------------------------~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~ 163 (232)
T cd04174 117 ---------------------------------STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV 163 (232)
T ss_pred ---------------------------------CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence 2689999999998542211 1 112334578999999999 5
Q ss_pred eeEeccCChh-hHHHHHHHHhhhhcC
Q psy11649 545 LLFHSSLDPG-LVKRTRDILNHYAFS 569 (890)
Q Consensus 545 L~ftS~K~~~-n~~~l~kyi~hr~fg 569 (890)
.|.||+|.+. |++.++..+.-.++.
T Consensus 164 ~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 164 YLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 8889999997 899999998876653
No 298
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.58 E-value=1.6e-07 Score=93.17 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=84.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+.+- .+. ...++++|+|++.+.++ +.+..|+..++....
T Consensus 53 ~~i~D~~G~~~~~~~~~~--~~~----~~~~ii~v~d~~~~~s~-~~l~~~~~~~~~~~~-------------------- 105 (166)
T cd01869 53 LQIWDTAGQERFRTITSS--YYR----GAHGIIIVYDVTDQESF-NNVKQWLQEIDRYAS-------------------- 105 (166)
T ss_pred EEEEECCCcHhHHHHHHH--HhC----cCCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC--------------------
Confidence 479999998665554443 122 23489999999999987 888889887754211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|+||||||+|+...- ....+.++.+|..+|...+.+|++.
T Consensus 106 --------------------------------~~~~~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (166)
T cd01869 106 --------------------------------ENVNKLLVGNKCDLTDKR-----VVDYSEAQEFADELGIPFLETSAKN 148 (166)
T ss_pred --------------------------------CCCcEEEEEEChhccccc-----CCCHHHHHHHHHHcCCeEEEEECCC
Confidence 037899999999986321 1223456778889999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.++..|...++
T Consensus 149 ~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 149 ATNVEQAFMTMAREIK 164 (166)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988775
No 299
>PRK09866 hypothetical protein; Provisional
Probab=98.58 E-value=1.2e-06 Score=103.55 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=68.0
Q ss_pred EEEEEEcCCCcch-hh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccc
Q psy11649 84 ICHLWELGSGTSR-LE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT 161 (890)
Q Consensus 84 ~l~IwDlpG~~~~-~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~ 161 (890)
++-+.||||...- .. +...... .+. .+|+|++|+|.++..+. .-....+.+++.
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~e-qL~--eADvVLFVVDat~~~s~--~DeeIlk~Lkk~------------------- 286 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQ-QLA--RASAVLAVLDYTQLKSI--SDEEVREAILAV------------------- 286 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHH-HHh--hCCEEEEEEeCCCCCCh--hHHHHHHHHHhc-------------------
Confidence 6788999998542 12 2221111 122 59999999999886553 212222222210
Q ss_pred cccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHH-HHHc--CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 162 ADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVN--GASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 162 ~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~l-a~~~--Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+...|+++|+||+|+.+..+ +....+...++.. .... ...++++||+.|.|++.+++.|...
T Consensus 287 -----------~K~~PVILVVNKIDl~dree-ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 287 -----------GQSVPLYVLVNKFDQQDRNS-DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred -----------CCCCCEEEEEEcccCCCccc-chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 01259999999999853211 1122222222222 1111 2359999999999999999998774
No 300
>PTZ00099 rab6; Provisional
Probab=98.57 E-value=4.4e-07 Score=92.66 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=83.4
Q ss_pred EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccccc
Q psy11649 394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH 473 (890)
Q Consensus 394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~ 473 (890)
.||+.+|+..+..+... .+. ..-++|+|+|+|++.++ +.+..|+..+..+..
T Consensus 32 ~iwDt~G~e~~~~~~~~--~~~----~ad~~ilv~D~t~~~sf-~~~~~w~~~i~~~~~--------------------- 83 (176)
T PTZ00099 32 QLWDTAGQERFRSLIPS--YIR----DSAAAIVVYDITNRQSF-ENTTKWIQDILNERG--------------------- 83 (176)
T ss_pred EEEECCChHHhhhccHH--HhC----CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhcC---------------------
Confidence 78999999877776665 222 23489999999999998 888888877654110
Q ss_pred ccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649 474 RDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP 553 (890)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~ 553 (890)
-++|+||||+|+|+...-.-. ...+..+|..++...+-||+|.+
T Consensus 84 -------------------------------~~~piilVgNK~DL~~~~~v~-----~~e~~~~~~~~~~~~~e~SAk~g 127 (176)
T PTZ00099 84 -------------------------------KDVIIALVGNKTDLGDLRKVT-----YEEGMQKAQEYNTMFHETSAKAG 127 (176)
T ss_pred -------------------------------CCCeEEEEEECcccccccCCC-----HHHHHHHHHHcCCEEEEEECCCC
Confidence 137999999999996321111 11234567788887777999999
Q ss_pred hhHHHHHHHHhhhhcC
Q psy11649 554 GLVKRTRDILNHYAFS 569 (890)
Q Consensus 554 ~n~~~l~kyi~hr~fg 569 (890)
.|++.++.+|...+..
T Consensus 128 ~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 128 HNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988765
No 301
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.56 E-value=2.1e-07 Score=93.50 Aligned_cols=113 Identities=16% Similarity=0.250 Sum_probs=85.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+. + .-++++|+|+++|.++ ..++.|+..++.+...
T Consensus 65 ~~i~Dt~G~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 118 (180)
T cd04127 65 LQLWDTAGQERFRSLTTA--FFR--D--AMGFLLIFDLTNEQSF-LNVRNWMSQLQTHAYC------------------- 118 (180)
T ss_pred EEEEeCCChHHHHHHHHH--HhC--C--CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 489999999776666555 232 1 2379999999999998 7888998876543210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|++|||||+|+...-+ .-.+.++.+|..+|...|.+|+|.
T Consensus 119 --------------------------------~~~piiiv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 119 --------------------------------ENPDIVLCGNKADLEDQRQ-----VSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred --------------------------------CCCcEEEEEeCccchhcCc-----cCHHHHHHHHHHcCCeEEEEeCCC
Confidence 0368999999999974211 112346778888999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.+++.|...++
T Consensus 162 ~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 162 GTNVEKAVERLLDLVM 177 (180)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 302
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.54 E-value=3.8e-07 Score=90.10 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=82.4
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+||+..|...+..+... -+. ..-.+++|+|++.+.++ +.+..|+..+.++..
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~--~~~----~ad~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 103 (163)
T cd04176 50 VLEILDTAGTEQFASMRDL--YIK----NGQGFIVVYSLVNQQTF-QDIKPMRDQIVRVKG------------------- 103 (163)
T ss_pred EEEEEECCCcccccchHHH--HHh----hCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 4579999998777666555 222 12368899999999997 888889877654211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
..++|+||||||+|+...-. .-......+|..+|...|.||++
T Consensus 104 --------------------------------~~~~piviv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 146 (163)
T cd04176 104 --------------------------------YEKVPIILVGNKVDLESERE-----VSSAEGRALAEEWGCPFMETSAK 146 (163)
T ss_pred --------------------------------CCCCCEEEEEECccchhcCc-----cCHHHHHHHHHHhCCEEEEecCC
Confidence 01489999999999863211 11123456677789999999999
Q ss_pred ChhhHHHHHHHHhhhh
Q psy11649 552 DPGLVKRTRDILNHYA 567 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~ 567 (890)
.+.|++.+++++..++
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd04176 147 SKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998654
No 303
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.54 E-value=4.4e-07 Score=88.63 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=83.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|+..+..+... .+.. .-.+++|+|++.+.++ +.+..|+..+..+...
T Consensus 51 ~~i~Dt~G~~~~~~l~~~--~~~~----~~~~i~v~~~~~~~s~-~~~~~~~~~i~~~~~~------------------- 104 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQ--YMRT----GEGFLCVFAINSRKSF-EDIHTYREQIKRVKDS------------------- 104 (162)
T ss_pred EEEEECCCCcchHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 578999999777666554 2221 2378999999999987 7788887766543210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+... ......++.+|..+|...+.||++.
T Consensus 105 --------------------------------~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (162)
T cd04138 105 --------------------------------DDVPMVLVGNKCDLAAR------TVSSRQGQDLAKSYGIPYIETSAKT 146 (162)
T ss_pred --------------------------------CCCCEEEEEECcccccc------eecHHHHHHHHHHhCCeEEEecCCC
Confidence 14799999999998741 2334557778888899999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++..|...+
T Consensus 147 ~~gi~~l~~~l~~~~ 161 (162)
T cd04138 147 RQGVEEAFYTLVREI 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998654
No 304
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.54 E-value=3e-07 Score=92.90 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=86.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..++|+.+|+..+..+... .+.. .-++|+|+|++.+.++ +.+..|...++....
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~--~~~~----~d~~ilv~d~~~~~Sf-~~~~~~~~~i~~~~~------------------- 104 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQ--YMRC----GEGFIICYSVTDRHSF-QEASEFKKLITRVRL------------------- 104 (172)
T ss_pred EEEEEeCCCchhhHHHhHH--Hhhc----CCEEEEEEECCchhHH-HHHHHHHHHHHHhcC-------------------
Confidence 4589999999776665554 2332 2379999999999998 888888776644210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.-++|+||||||+|+...- ..-....+.+|..+|+..+.||++
T Consensus 105 --------------------------------~~~~piilvgNK~Dl~~~~-----~v~~~~~~~~a~~~~~~~~e~Sa~ 147 (172)
T cd04141 105 --------------------------------TEDIPLVLVGNKVDLESQR-----QVTTEEGRNLAREFNCPFFETSAA 147 (172)
T ss_pred --------------------------------CCCCCEEEEEEChhhhhcC-----ccCHHHHHHHHHHhCCEEEEEecC
Confidence 0138999999999986421 112234567788899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
++.|++.++..|...+..
T Consensus 148 ~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 148 LRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988775
No 305
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.54 E-value=1.9e-07 Score=98.88 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=89.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..||+..|+..+..+... -+. ...++|+|+|++.+.++ +.++.|...+..+.
T Consensus 46 l~iwDt~G~e~~~~l~~~--~~~----~ad~~IlV~Dvt~~~Sf-~~l~~~~~~l~~~~--------------------- 97 (220)
T cd04126 46 ISIWDTAGREQFHGLGSM--YCR----GAAAVILTYDVSNVQSL-EELEDRFLGLTDTA--------------------- 97 (220)
T ss_pred EEEEeCCCcccchhhHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc---------------------
Confidence 589999999877766555 222 23489999999999998 77777765543210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh--------------hHHHHHHHHHHHHH
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP--------------NKKRIAVQCLRYLA 538 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~--------------E~~d~Iq~~lR~fc 538 (890)
+-++|+||||||+|+..+... .+...-......+|
T Consensus 98 -------------------------------~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a 146 (220)
T cd04126 98 -------------------------------NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY 146 (220)
T ss_pred -------------------------------CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHH
Confidence 013789999999999742111 12333445677788
Q ss_pred HHcC--------------CceeEeccCChhhHHHHHHHHhhhhcCCCCCc
Q psy11649 539 HVNG--------------ASLLFHSSLDPGLVKRTRDILNHYAFSSHLAS 574 (890)
Q Consensus 539 l~yG--------------AsL~ftS~K~~~n~~~l~kyi~hr~fg~~~~~ 574 (890)
.++| +..|.||+|++.|++.++..+...++.+...+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~ 196 (220)
T cd04126 147 KRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQ 196 (220)
T ss_pred HHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 8877 57899999999999999999999998765543
No 306
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.54 E-value=3.1e-07 Score=92.56 Aligned_cols=119 Identities=20% Similarity=0.178 Sum_probs=88.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+. ...++++|+|.+.+.++ +.+++|+..+.++...
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~----~ad~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 104 (170)
T cd04108 51 LQLWDTAGQERFKCIAST--YYR----GAQAIIIVFDLTDVASL-EHTRQWLEDALKENDP------------------- 104 (170)
T ss_pred EEEEeCCChHHHHhhHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 689999999665554443 122 23479999999999888 7888888877543210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
--+|+++||||+|+...-+ ...+.+.++.+|.++++..+.||++.
T Consensus 105 --------------------------------~~~~iilVgnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~e~Sa~~ 149 (170)
T cd04108 105 --------------------------------SSVLLFLVGTKKDLSSPAQ---YALMEQDAIKLAAEMQAEYWSVSALS 149 (170)
T ss_pred --------------------------------CCCeEEEEEEChhcCcccc---ccccHHHHHHHHHHcCCeEEEEECCC
Confidence 0158999999999853211 12245567788889999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCCC
Q psy11649 553 PGLVKRTRDILNHYAFSSHL 572 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~~ 572 (890)
+.|++.+++.|...++.+++
T Consensus 150 g~~v~~lf~~l~~~~~~~~~ 169 (170)
T cd04108 150 GENVREFFFRVAALTFELGC 169 (170)
T ss_pred CCCHHHHHHHHHHHHHHccC
Confidence 99999999999999988765
No 307
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.53 E-value=2.8e-07 Score=91.66 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=81.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+.+|...+..+... .+. ....+++|+|++.+.++ +.++.|++.++.+..
T Consensus 52 ~~l~Dt~g~~~~~~~~~~--~~~----~~~~~l~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 104 (165)
T cd01865 52 LQIWDTAGQERYRTITTA--YYR----GAMGFILMYDITNEESF-NAVQDWSTQIKTYSW-------------------- 104 (165)
T ss_pred EEEEECCChHHHHHHHHH--Hcc----CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 489999998665544333 111 23378999999999887 788999876643110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-.+|++|||||+|+...-. ......+.++..+|...+.+|+|.
T Consensus 105 --------------------------------~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (165)
T cd01865 105 --------------------------------DNAQVILVGNKCDMEDERV-----VSSERGRQLADQLGFEFFEASAKE 147 (165)
T ss_pred --------------------------------CCCCEEEEEECcccCcccc-----cCHHHHHHHHHHcCCEEEEEECCC
Confidence 0268999999999963211 112234556778899999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.+++.|...+++
T Consensus 148 ~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 148 NINVKQVFERLVDIICD 164 (165)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887764
No 308
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.53 E-value=3.1e-07 Score=98.79 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=65.8
Q ss_pred cCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++++|+|+++|. ++ +.+.+|+..+.. .++|++||+||+|+..
T Consensus 36 n~D~viiV~d~~~p~~s~-~~l~r~l~~~~~--------------------------------~~i~~vIV~NK~DL~~- 81 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELSL-NQLDRFLVVAEA--------------------------------QNIEPIIVLNKIDLLD- 81 (245)
T ss_pred cCCEEEEEEECCCCCCCH-HHHHHHHHHHHH--------------------------------CCCCEEEEEECcccCC-
Confidence 699999999999988 66 888999864432 2689999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.+....+.++.++ .+|..++++||+++.|++++++.+..
T Consensus 82 ----~~~~~~~~~~~~~-~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 82 ----DEDMEKEQLDIYR-NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred ----CHHHHHHHHHHHH-HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 3333334555554 47899999999999999999887754
No 309
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.53 E-value=4.3e-07 Score=95.75 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=83.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-.++|+.+|+..+..+.+. -.. ...++|+|+|++.+.++ +.++.|+..++++..
T Consensus 63 ~l~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilvfD~~~~~s~-~~i~~w~~~i~~~~~------------------- 116 (219)
T PLN03071 63 RFYCWDTAGQEKFGGLRDG--YYI----HGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCE------------------- 116 (219)
T ss_pred EEEEEECCCchhhhhhhHH--Hcc----cccEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence 4489999999766554443 112 22378999999999998 888999887764210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
++|+||||||+|+......+ ..+ .++..++...|.||+|
T Consensus 117 ----------------------------------~~piilvgNK~Dl~~~~v~~------~~~-~~~~~~~~~~~e~SAk 155 (219)
T PLN03071 117 ----------------------------------NIPIVLCGNKVDVKNRQVKA------KQV-TFHRKKNLQYYEISAK 155 (219)
T ss_pred ----------------------------------CCcEEEEEEchhhhhccCCH------HHH-HHHHhcCCEEEEcCCC
Confidence 37999999999986321111 123 5677788899999999
Q ss_pred ChhhHHHHHHHHhhhhcCC
Q psy11649 552 DPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~ 570 (890)
.+.|++.++.+|..+++..
T Consensus 156 ~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 156 SNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999764
No 310
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.52 E-value=6.5e-07 Score=92.03 Aligned_cols=117 Identities=21% Similarity=0.232 Sum_probs=84.5
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.+||+.+|+..+..+-+. -.. ..-++|+|+|++.|.++ +.++ .|...++.+.
T Consensus 53 l~i~Dt~G~e~~~~l~~~--~~~----~a~~~ilvydit~~~Sf-~~~~~~w~~~i~~~~-------------------- 105 (191)
T cd01875 53 LNLWDTAGQEEYDRLRTL--SYP----QTNVFIICFSIASPSSY-ENVRHKWHPEVCHHC-------------------- 105 (191)
T ss_pred EEEEECCCchhhhhhhhh--hcc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC--------------------
Confidence 489999999777765444 122 22378999999999998 7775 6876554310
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-hH-H-----HHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-NK-K-----RIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E~-~-----d~Iq~~lR~fcl~yGA- 543 (890)
-.+|+||||||+|+-..-+. +. . ..-.+..+.+|..+|+
T Consensus 106 ---------------------------------~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 152 (191)
T cd01875 106 ---------------------------------PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV 152 (191)
T ss_pred ---------------------------------CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 03799999999998632110 00 0 0123467889999996
Q ss_pred ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
..|-||+|++.|++.++..+...+..
T Consensus 153 ~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 153 KYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999988865
No 311
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.52 E-value=3.5e-07 Score=91.02 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=80.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+..|+..+..+... ... ..-++++|+|++.+.++ +.+.+|++.++.+..
T Consensus 51 l~i~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~sf-~~~~~~~~~~~~~~~-------------------- 103 (161)
T cd04117 51 IQIWDTAGQERYQTITKQ--YYR----RAQGIFLVYDISSERSY-QHIMKWVSDVDEYAP-------------------- 103 (161)
T ss_pred EEEEeCCCcHhHHhhHHH--Hhc----CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 479999998766665544 121 22378999999999988 888999876654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-.+|+++||||+|+... +....+..+.+|..++...+-||+|.
T Consensus 104 --------------------------------~~~~iilvgnK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sa~~ 146 (161)
T cd04117 104 --------------------------------EGVQKILIGNKADEEQK-----RQVGDEQGNKLAKEYGMDFFETSACT 146 (161)
T ss_pred --------------------------------CCCeEEEEEECcccccc-----cCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 03789999999998632 11223456667788899999999999
Q ss_pred hhhHHHHHHHHhh
Q psy11649 553 PGLVKRTRDILNH 565 (890)
Q Consensus 553 ~~n~~~l~kyi~h 565 (890)
+.|++.++..|.-
T Consensus 147 ~~~v~~~f~~l~~ 159 (161)
T cd04117 147 NSNIKESFTRLTE 159 (161)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988864
No 312
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.52 E-value=5e-07 Score=88.91 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=83.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|+..+..+... .+. ...++++|+|++.|.++ +.+..|+..++.+...
T Consensus 51 ~~l~D~~g~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 104 (161)
T cd01863 51 LAIWDTAGQERFRTLTSS--YYR----GAQGVILVYDVTRRDTF-TNLETWLNELETYSTN------------------- 104 (161)
T ss_pred EEEEECCCchhhhhhhHH--HhC----CCCEEEEEEECCCHHHH-HhHHHHHHHHHHhCCC-------------------
Confidence 589999998665554443 122 23479999999999997 7888898877664321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccc-cCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~-~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|++|||||+|+. ..... ...+.+|..+++..+.+|++
T Consensus 105 --------------------------------~~~~~~iv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd01863 105 --------------------------------NDIVKMLVGNKIDKENREVTR-------EEGLKFARKHNMLFIETSAK 145 (161)
T ss_pred --------------------------------CCCcEEEEEECCcccccccCH-------HHHHHHHHHcCCEEEEEecC
Confidence 147899999999997 22222 23566788899999999999
Q ss_pred ChhhHHHHHHHHhhhh
Q psy11649 552 DPGLVKRTRDILNHYA 567 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~ 567 (890)
.+.+++.+.+.+..++
T Consensus 146 ~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 146 TRDGVQQAFEELVEKI 161 (161)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999988763
No 313
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.50 E-value=7.8e-07 Score=88.38 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=81.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+.. .-++++|+|++++.++ +.++.|+..++...
T Consensus 51 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~--------------------- 102 (161)
T cd04124 51 VDFWDTAGQERFQTMHAS--YYHK----AHACILVFDVTRKITY-KNLSKWYEELREYR--------------------- 102 (161)
T ss_pred EEEEeCCCchhhhhhhHH--HhCC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhC---------------------
Confidence 489999999776665554 2222 2379999999999988 88899988775410
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-.+|++||+||+|+-.. .......+|..++...+.+|+|.
T Consensus 103 --------------------------------~~~p~ivv~nK~Dl~~~--------~~~~~~~~~~~~~~~~~~~Sa~~ 142 (161)
T cd04124 103 --------------------------------PEIPCIVVANKIDLDPS--------VTQKKFNFAEKHNLPLYYVSAAD 142 (161)
T ss_pred --------------------------------CCCcEEEEEECccCchh--------HHHHHHHHHHHcCCeEEEEeCCC
Confidence 02789999999998421 12234467888899999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.+++.+.-.+.
T Consensus 143 ~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 143 GTNVVKLFQDAIKLAV 158 (161)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998876553
No 314
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.49 E-value=5.8e-07 Score=90.09 Aligned_cols=113 Identities=10% Similarity=0.113 Sum_probs=83.5
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..++|+..|+.....+... .+ ...-++|+|+|++.+.++ +.++.|++.++.+..
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~--~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 103 (166)
T cd00877 50 RFNVWDTAGQEKFGGLRDG--YY----IGGQCAIIMFDVTSRVTY-KNVPNWHRDLVRVCG------------------- 103 (166)
T ss_pred EEEEEECCCChhhccccHH--Hh----cCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence 3489999998655544333 11 123478999999999998 888999877665211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.+|+||||||+|+.... +......+|..++...|-||+|
T Consensus 104 ----------------------------------~~piiiv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~e~Sa~ 142 (166)
T cd00877 104 ----------------------------------NIPIVLCGNKVDIKDRK-------VKAKQITFHRKKNLQYYEISAK 142 (166)
T ss_pred ----------------------------------CCcEEEEEEchhccccc-------CCHHHHHHHHHcCCEEEEEeCC
Confidence 37999999999996211 1112234677788899999999
Q ss_pred ChhhHHHHHHHHhhhhcCCC
Q psy11649 552 DPGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~~ 571 (890)
.+.|++.++.+|.-.+++.|
T Consensus 143 ~~~~v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 143 SNYNFEKPFLWLARKLLGNP 162 (166)
T ss_pred CCCChHHHHHHHHHHHHhcc
Confidence 99999999999998887643
No 315
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.49 E-value=7e-07 Score=88.87 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=82.5
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+. ..-.+|+|+|++.+.++ +.++.|+..++.+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 104 (165)
T cd04140 51 LQITDTTGSHQFPAMQRL--SIS----KGHAFILVYSVTSKQSL-EELKPIYELICEIKGN------------------- 104 (165)
T ss_pred EEEEECCCCCcchHHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcC-------------------
Confidence 589999999776655443 222 12378999999999987 8889998888764321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
. .-.+|++|||||+|+... ..........+|..+++..|.||+|.
T Consensus 105 --------~----------------------~~~~piilv~nK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~SA~~ 149 (165)
T cd04140 105 --------N----------------------IEKIPIMLVGNKCDESHK-----REVSSNEGAACATEWNCAFMETSAKT 149 (165)
T ss_pred --------C----------------------CCCCCEEEEEECcccccc-----CeecHHHHHHHHHHhCCcEEEeecCC
Confidence 0 014899999999999641 11223345667888999999999999
Q ss_pred hhhHHHHHHHHhh
Q psy11649 553 PGLVKRTRDILNH 565 (890)
Q Consensus 553 ~~n~~~l~kyi~h 565 (890)
+.|++.++..|.-
T Consensus 150 g~~v~~~f~~l~~ 162 (165)
T cd04140 150 NHNVQELFQELLN 162 (165)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988763
No 316
>KOG0077|consensus
Probab=98.48 E-value=5.1e-07 Score=90.00 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
.-|++++|-.|+|||||++.|.+. -..+.||.--. .......+.++..+|++|...-+..+..| ...+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT-----SE~l~Ig~m~ftt~DLGGH~qArr~wkdy------f~~v 88 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT-----SEELSIGGMTFTTFDLGGHLQARRVWKDY------FPQV 88 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCCC-----hHHheecCceEEEEccccHHHHHHHHHHH------Hhhh
Confidence 348999999999999999999874 34444554321 00111223379999999987666777666 1248
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++.+|+-+.++| ++.+++.+.++.. .....+|+++.+||+|...
T Consensus 89 ~~iv~lvda~d~er~--------~es~~eld~ll~~---------------------e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 89 DAIVYLVDAYDQERF--------AESKKELDALLSD---------------------ESLATVPFLILGNKIDIPY 135 (193)
T ss_pred ceeEeeeehhhHHHh--------HHHHHHHHHHHhH---------------------HHHhcCcceeecccccCCC
Confidence 999999999999998 4444444443321 1112589999999999853
No 317
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.48 E-value=4.3e-07 Score=90.12 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=81.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|...+..+... .+. ..-++++|+|+++|.++ +.++.|+..+..+..
T Consensus 54 l~i~D~~G~~~~~~~~~~--~~~----~~d~~llv~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 106 (165)
T cd01864 54 LQIWDTAGQERFRTITQS--YYR----SANGAIIAYDITRRSSF-ESVPHWIEEVEKYGA-------------------- 106 (165)
T ss_pred EEEEECCChHHHHHHHHH--Hhc----cCCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC--------------------
Confidence 489999998655443333 121 12378899999999997 889999998865311
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K 551 (890)
.++|++|||||+|+...- +.....++.+|..+++ ..+.+|+|
T Consensus 107 --------------------------------~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (165)
T cd01864 107 --------------------------------SNVVLLLIGNKCDLEEQR-----EVLFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred --------------------------------CCCcEEEEEECccccccc-----ccCHHHHHHHHHHcCCcEEEEEECC
Confidence 147899999999997431 2233456788888997 57999999
Q ss_pred ChhhHHHHHHHHhhh
Q psy11649 552 DPGLVKRTRDILNHY 566 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr 566 (890)
++.|++.+++-|...
T Consensus 150 ~~~~v~~~~~~l~~~ 164 (165)
T cd01864 150 ESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999888754
No 318
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.48 E-value=6e-07 Score=91.64 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=84.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|...+..+... .+. ...++++|+|++.+.++ +.+..|+..++.+ .
T Consensus 52 l~i~D~~G~~~~~~~~~~--~~~----~~d~iilv~d~~~~~s~-~~~~~~~~~i~~~-~-------------------- 103 (193)
T cd04118 52 LGIWDTAGSERYEAMSRI--YYR----GAKAAIVCYDLTDSSSF-ERAKFWVKELQNL-E-------------------- 103 (193)
T ss_pred EEEEECCCchhhhhhhHh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHhc-C--------------------
Confidence 489999998666555443 121 23489999999999876 7778887765431 0
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|++||+||+|+....+ +........++.|+..+++.++.+|++.
T Consensus 104 --------------------------------~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 150 (193)
T cd04118 104 --------------------------------EHCKIYLCGTKSDLIEQDR-SLRQVDFHDVQDFADEIKAQHFETSSKT 150 (193)
T ss_pred --------------------------------CCCCEEEEEEccccccccc-ccCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 0378999999999874321 1122222456678889999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.+++.++..|...+..
T Consensus 151 ~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 151 GQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988865
No 319
>PRK00007 elongation factor G; Reviewed
Probab=98.47 E-value=1e-06 Score=107.94 Aligned_cols=139 Identities=13% Similarity=0.008 Sum_probs=83.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC------C--------------CCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND------T--------------PKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------~--------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
.-.+|+|+|.+++|||||+++|+...+ . ...+++++........ .+.++++.||||.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~---~~~~~~liDTPG~ 85 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW---KDHRINIIDTPGH 85 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE---CCeEEEEEeCCCc
Confidence 457999999999999999999974111 0 1233444322222221 2348999999998
Q ss_pred cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
..|..-+... +. .+|++|+|+|.+....- .....|.. + ..
T Consensus 86 ~~f~~ev~~a----l~--~~D~~vlVvda~~g~~~-qt~~~~~~-~--------------------------------~~ 125 (693)
T PRK00007 86 VDFTIEVERS----LR--VLDGAVAVFDAVGGVEP-QSETVWRQ-A--------------------------------DK 125 (693)
T ss_pred HHHHHHHHHH----HH--HcCEEEEEEECCCCcch-hhHHHHHH-H--------------------------------HH
Confidence 7653322211 11 38999999998875443 22222221 1 12
Q ss_pred CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC----eEEEEeccCC
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA----SLLFHSSLDP 222 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga----~l~etSAK~~ 222 (890)
.++|+++++||+|+... . ....+.++...++. ..+++|+..+
T Consensus 126 ~~~p~iv~vNK~D~~~~----~---~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 126 YKVPRIAFVNKMDRTGA----D---FYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred cCCCEEEEEECCCCCCC----C---HHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 36899999999998631 1 22334444444443 3677888765
No 320
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.47 E-value=4.8e-07 Score=91.76 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=84.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.++|+..|+..+..+... .+. ..-++++|+|++.+.++ +.+ +.|+..++.+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~----~ad~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------- 103 (187)
T cd04132 51 LALWDTAGQEEYDRLRPL--SYP----DVDVLLICYAVDNPTSL-DNVEDKWFPEVNHFC-------------------- 103 (187)
T ss_pred EEEEECCCchhHHHHHHH--hCC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC--------------------
Confidence 479999998766655443 122 23378999999999988 555 46876543210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~ 550 (890)
-++|+||||||+|+....+.+ .......++.+|..+|+ ..|.||+
T Consensus 104 ---------------------------------~~~piilv~nK~Dl~~~~~~~-~~v~~~~~~~~~~~~~~~~~~e~Sa 149 (187)
T cd04132 104 ---------------------------------PGTPIMLVGLKTDLRKDKNLD-RKVTPAQAESVAKKQGAFAYLECSA 149 (187)
T ss_pred ---------------------------------CCCCEEEEEeChhhhhCcccc-CCcCHHHHHHHHHHcCCcEEEEccC
Confidence 037999999999997543211 12334567788999999 8999999
Q ss_pred CChhhHHHHHHHHhhhhcCC
Q psy11649 551 LDPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~fg~ 570 (890)
+.+.|++.++..+...+...
T Consensus 150 ~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 150 KTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999888753
No 321
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.47 E-value=6e-07 Score=91.98 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=85.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|+..+..+... .+.. .-++|+|+|++.+.++ ++++.|++.++.+...
T Consensus 49 l~i~Dt~G~~~~~~~~~~--~~~~----ad~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 102 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQ--WIRE----GEGFILVYSITSRSTF-ERVERFREQIQRVKDE------------------- 102 (190)
T ss_pred EEEEECCCchhhHHHHHH--HHHh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcc-------------------
Confidence 578999998666655443 2222 2378999999999998 8999999888764321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.+-.+|+||||||+|+..+- .........++..+|+..|-+|+|.
T Consensus 103 ------------------------------~~~~~piilvgNK~Dl~~~~-----~v~~~~~~~~~~~~~~~~~e~SAk~ 147 (190)
T cd04144 103 ------------------------------SAADVPIMIVGNKCDKVYER-----EVSTEEGAALARRLGCEFIEASAKT 147 (190)
T ss_pred ------------------------------cCCCCCEEEEEEChhccccC-----ccCHHHHHHHHHHhCCEEEEecCCC
Confidence 00147999999999986321 1122335667888999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.++..|..++.
T Consensus 148 ~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 148 NVNVERAFYTLVRALR 163 (190)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988776
No 322
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.47 E-value=7.1e-07 Score=87.75 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=80.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+. ..-.+++|+|++.|.++ +.+..|+..++....
T Consensus 53 ~~i~D~~G~~~~~~~~~~--~~~----~~~~~v~v~d~~~~~s~-~~l~~~~~~~~~~~~-------------------- 105 (162)
T cd04106 53 LMLWDTAGQEEFDAITKA--YYR----GAQACILVFSTTDRESF-EAIESWKEKVEAECG-------------------- 105 (162)
T ss_pred EEEeeCCchHHHHHhHHH--Hhc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 489999998666655443 222 12378999999999987 888999887653110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
++|+|||+||.|+..+-+-. .+.+..+|..+|...|.+|+++
T Consensus 106 ---------------------------------~~p~iiv~nK~Dl~~~~~v~-----~~~~~~~~~~~~~~~~~~Sa~~ 147 (162)
T cd04106 106 ---------------------------------DIPMVLVQTKIDLLDQAVIT-----NEEAEALAKRLQLPLFRTSVKD 147 (162)
T ss_pred ---------------------------------CCCEEEEEEChhcccccCCC-----HHHHHHHHHHcCCeEEEEECCC
Confidence 37899999999997432111 1335677888999999999999
Q ss_pred hhhHHHHHHHHhh
Q psy11649 553 PGLVKRTRDILNH 565 (890)
Q Consensus 553 ~~n~~~l~kyi~h 565 (890)
+.|++.++++|..
T Consensus 148 ~~~v~~l~~~l~~ 160 (162)
T cd04106 148 DFNVTELFEYLAE 160 (162)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999864
No 323
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.47 E-value=5.4e-07 Score=91.83 Aligned_cols=113 Identities=11% Similarity=0.166 Sum_probs=84.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+.+|...+..+... .+. ...++|+|+|.+.+.++ +.+..|+..++.+...
T Consensus 51 ~~i~Dt~g~~~~~~~~~~--~~~----~~d~iilv~d~~~~~s~-~~i~~~~~~i~~~~~~------------------- 104 (188)
T cd04125 51 LQIWDTNGQERFRSLNNS--YYR----GAHGYLLVYDVTDQESF-ENLKFWINEINRYARE------------------- 104 (188)
T ss_pred EEEEECCCcHHHHhhHHH--Hcc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCCC-------------------
Confidence 479999998666554444 222 23389999999999987 8888898877642110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.+|+||||||+|+...-. .-....+.+|..+|+..+.+|++.
T Consensus 105 ---------------------------------~~~~ivv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~evSa~~ 146 (188)
T cd04125 105 ---------------------------------NVIKVIVANKSDLVNNKV-----VDSNIAKSFCDSLNIPFFETSAKQ 146 (188)
T ss_pred ---------------------------------CCeEEEEEECCCCccccc-----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence 268999999999873211 112344567778899999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|.+.++.
T Consensus 147 ~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 147 SINVEEAFILLVKLIIK 163 (188)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998874
No 324
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.47 E-value=5.3e-07 Score=93.24 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=85.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+++|+..+..+... .+.. ..++|+|+|++.+.++ +.+..|+..++.+..
T Consensus 57 l~l~D~~G~~~~~~~~~~--~~~~----a~~iilv~D~~~~~s~-~~~~~~~~~i~~~~~-------------------- 109 (199)
T cd04110 57 LQIWDTAGQERFRTITST--YYRG----THGVIVVYDVTNGESF-VNVKRWLQEIEQNCD-------------------- 109 (199)
T ss_pred EEEEeCCCchhHHHHHHH--HhCC----CcEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 579999998666655444 1221 2379999999999987 888889887654111
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.+|++|||||+|+..... .....++.+|..+|...|-+|++.
T Consensus 110 ---------------------------------~~piivVgNK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~ 151 (199)
T cd04110 110 ---------------------------------DVCKVLVGNKNDDPERKV-----VETEDAYKFAGQMGISLFETSAKE 151 (199)
T ss_pred ---------------------------------CCCEEEEEECcccccccc-----cCHHHHHHHHHHcCCEEEEEECCC
Confidence 268899999999864211 113456677788999999999999
Q ss_pred hhhHHHHHHHHhhhhcCC
Q psy11649 553 PGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~ 570 (890)
+.|++.++++|...+...
T Consensus 152 ~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 152 NINVEEMFNCITELVLRA 169 (199)
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999999988764
No 325
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.46 E-value=8.7e-07 Score=90.80 Aligned_cols=117 Identities=21% Similarity=0.174 Sum_probs=83.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.+||+..|+..+..+-.. ... ..-++|+|+|++.+.++ +.++ .|+..++.+.
T Consensus 50 l~i~Dt~G~~~~~~l~~~--~~~----~a~~~ilv~dv~~~~sf-~~~~~~~~~~i~~~~-------------------- 102 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSL--SYA----DTDVIMLCFSVDSPDSL-ENVESKWLGEIREHC-------------------- 102 (189)
T ss_pred EEEEECCCChhccccccc--ccc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC--------------------
Confidence 489999999666554333 111 12378999999999998 6665 6887665310
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHH-------HHHHHHHHHHHHHcC-C
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKK-------RIAVQCLRYLAHVNG-A 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~-------d~Iq~~lR~fcl~yG-A 543 (890)
-++|+||||||+|+....+.+.. ..-....+.+|..+| +
T Consensus 103 ---------------------------------~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (189)
T cd04134 103 ---------------------------------PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL 149 (189)
T ss_pred ---------------------------------CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 03799999999999754322211 011234567888888 5
Q ss_pred ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
..|.||+|++.|++.++..|.-.+.+
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 68899999999999999999988875
No 326
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.46 E-value=9.1e-07 Score=86.94 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=82.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... -+. ....+++|+|++.+.++ +.++.|+..+..+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 104 (163)
T cd04136 51 LEILDTAGTEQFTAMRDL--YIK----NGQGFVLVYSITSQSSF-NDLQDLREQILRVKDT------------------- 104 (163)
T ss_pred EEEEECCCccccchHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 479999999776665554 122 23378999999999998 8888898877653210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+..+- ...++....++..+|...|.+|++.
T Consensus 105 --------------------------------~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (163)
T cd04136 105 --------------------------------ENVPMVLVGNKCDLEDER-----VVSREEGQALARQWGCPFYETSAKS 147 (163)
T ss_pred --------------------------------CCCCEEEEEECccccccc-----eecHHHHHHHHHHcCCeEEEecCCC
Confidence 147999999999986321 1122335567778888899999999
Q ss_pred hhhHHHHHHHHhhh
Q psy11649 553 PGLVKRTRDILNHY 566 (890)
Q Consensus 553 ~~n~~~l~kyi~hr 566 (890)
+.|++.++..|...
T Consensus 148 ~~~v~~l~~~l~~~ 161 (163)
T cd04136 148 KINVDEVFADLVRQ 161 (163)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988754
No 327
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.45 E-value=8e-07 Score=92.22 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=78.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
+++|+..|+.. .+-.. ... ..-++|+|+|++.+.++ +.++ .|+..++.+..
T Consensus 68 l~iwDTaG~~~--~~~~~--~~~----~ad~iilv~d~t~~~Sf-~~~~~~w~~~i~~~~~------------------- 119 (195)
T cd01873 68 LRLWDTFGDHD--KDRRF--AYG----RSDVVLLCFSIASPNSL-RNVKTMWYPEIRHFCP------------------- 119 (195)
T ss_pred EEEEeCCCChh--hhhcc--cCC----CCCEEEEEEECCChhHH-HHHHHHHHHHHHHhCC-------------------
Confidence 48999988742 11111 111 23379999999999998 7776 69876643110
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh--------------HHHHHHHHHHHH
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN--------------KKRIAVQCLRYL 537 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E--------------~~d~Iq~~lR~f 537 (890)
++|+||||||+|+-..-..+ +...-....+.+
T Consensus 120 ----------------------------------~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~ 165 (195)
T cd01873 120 ----------------------------------RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAV 165 (195)
T ss_pred ----------------------------------CCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHH
Confidence 26899999999985321111 123335678899
Q ss_pred HHHcCCceeEeccCChhhHHHHHHHHhh
Q psy11649 538 AHVNGASLLFHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 538 cl~yGAsL~ftS~K~~~n~~~l~kyi~h 565 (890)
|..+|+..|.||+|.+.|++.++..+..
T Consensus 166 a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 166 AKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999988764
No 328
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.45 E-value=1e-06 Score=86.75 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=82.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|...+..+... .+.. .-.+++|+|++.+.++ +.+..|...+..+...
T Consensus 52 ~~i~Dt~G~~~~~~~~~~--~~~~----~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 105 (164)
T cd04145 52 LDILDTAGQEEFSAMREQ--YMRT----GEGFLLVFSVTDRGSF-EEVDKFHTQILRVKDR------------------- 105 (164)
T ss_pred EEEEECCCCcchhHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 579999998776665544 2222 2378899999999996 8888888766553221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...- ..-.+..+.+|..+|...|.+|++.
T Consensus 106 --------------------------------~~~piiiv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (164)
T cd04145 106 --------------------------------DEFPMILVGNKADLEHQR-----KVSREEGQELARKLKIPYIETSAKD 148 (164)
T ss_pred --------------------------------CCCCEEEEeeCccccccc-----eecHHHHHHHHHHcCCcEEEeeCCC
Confidence 147999999999986321 1112346778888999999999999
Q ss_pred hhhHHHHHHHHhhh
Q psy11649 553 PGLVKRTRDILNHY 566 (890)
Q Consensus 553 ~~n~~~l~kyi~hr 566 (890)
+.|++.++++|...
T Consensus 149 ~~~i~~l~~~l~~~ 162 (164)
T cd04145 149 RLNVDKAFHDLVRV 162 (164)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988754
No 329
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.44 E-value=1.1e-06 Score=87.70 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=82.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|...+..+... .+. . ...+++|+|++.|.++ +.++.|...+......
T Consensus 51 ~~i~Dt~G~~~~~~~~~~--~~~--~--~~~~vlv~~~~~~~s~-~~~~~~~~~i~~~~~~------------------- 104 (168)
T cd04177 51 LEILDTAGTEQFTAMREL--YIK--S--GQGFLLVYSVTSEASL-NELGELREQVLRIKDS------------------- 104 (168)
T ss_pred EEEEeCCCcccchhhhHH--HHh--h--CCEEEEEEECCCHHHH-HHHHHHHHHHHHhhCC-------------------
Confidence 379999999777665555 122 1 2367899999999988 7788888877653221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K 551 (890)
.++|+|+||||+|+...-. ..++.+..++..+| .+++.||++
T Consensus 105 --------------------------------~~~piiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 105 --------------------------------DNVPMVLVGNKADLEDDRQ-----VSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred --------------------------------CCCCEEEEEEChhccccCc-----cCHHHHHHHHHHcCCceEEEeeCC
Confidence 1479999999999863211 12223455667788 889999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.+++.|.-+++
T Consensus 148 ~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 148 KRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987654
No 330
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.44 E-value=7.3e-07 Score=85.95 Aligned_cols=108 Identities=17% Similarity=0.301 Sum_probs=81.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+.+|+++|...+..+... .+.. .-++++|+|++.|.++ +.++.|+..+.....
T Consensus 51 ~~l~D~~g~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~-------------------- 103 (159)
T cd00154 51 LQIWDTAGQERFRSITPS--YYRG----AHGAILVYDITNRESF-ENLDKWLKELKEYAP-------------------- 103 (159)
T ss_pred EEEEecCChHHHHHHHHH--HhcC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 379999999776665555 2322 2378999999998876 788888887766321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|++||+||+|... ........++.++..++...+++|++.
T Consensus 104 --------------------------------~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~ 146 (159)
T cd00154 104 --------------------------------ENIPIILVGNKIDLED-----QRQVSTEEAQQFAKENGLLFFETSAKT 146 (159)
T ss_pred --------------------------------CCCcEEEEEEcccccc-----cccccHHHHHHHHHHcCCeEEEEecCC
Confidence 1478999999999971 122334556777778999999999999
Q ss_pred hhhHHHHHHHHh
Q psy11649 553 PGLVKRTRDILN 564 (890)
Q Consensus 553 ~~n~~~l~kyi~ 564 (890)
+.+++.++..|.
T Consensus 147 ~~~i~~~~~~i~ 158 (159)
T cd00154 147 GENVEELFQSLA 158 (159)
T ss_pred CCCHHHHHHHHh
Confidence 999999998875
No 331
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.44 E-value=1.5e-06 Score=86.76 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=82.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
+.+|+..|+..+..+.+. .+. ...++|+|+|++.+.++ +.+ +.|+..++.+.
T Consensus 48 ~~i~Dt~G~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~s~-~~~~~~~~~~i~~~~-------------------- 100 (174)
T smart00174 48 LGLWDTAGQEDYDRLRPL--SYP----DTDVFLICFSVDSPASF-ENVKEKWYPEVKHFC-------------------- 100 (174)
T ss_pred EEEEECCCCcccchhchh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC--------------------
Confidence 589999999766665554 222 23489999999999988 555 56887664310
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-h------HHHHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-N------KKRIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E------~~d~Iq~~lR~fcl~yGA- 543 (890)
-++|+||||||+|+..+-.. + ....-.+....+|..+|+
T Consensus 101 ---------------------------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (174)
T smart00174 101 ---------------------------------PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV 147 (174)
T ss_pred ---------------------------------CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCc
Confidence 03799999999999742110 0 011234567789999998
Q ss_pred ceeEeccCChhhHHHHHHHHhhhh
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
..|-+|+|++.|++.++.-+...+
T Consensus 148 ~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 148 KYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHh
Confidence 788899999999999998887654
No 332
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.43 E-value=1.3e-06 Score=86.38 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=82.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|++.|+..+..+.+. -+. .. -++++|+|++.+.++ +.+++|+..+..+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~--~~--d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 104 (164)
T cd04175 51 LEILDTAGTEQFTAMRDL--YMK--NG--QGFVLVYSITAQSTF-NDLQDLREQILRVKDT------------------- 104 (164)
T ss_pred EEEEECCCcccchhHHHH--HHh--hC--CEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 379999999777766665 122 21 278999999999998 8888888777542110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|++||+||+|+..+...+ ...+..+|.+++...+.||+|+
T Consensus 105 --------------------------------~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~Sa~~ 147 (164)
T cd04175 105 --------------------------------EDVPMILVGNKCDLEDERVVG-----KEQGQNLARQWGCAFLETSAKA 147 (164)
T ss_pred --------------------------------CCCCEEEEEECCcchhccEEc-----HHHHHHHHHHhCCEEEEeeCCC
Confidence 137999999999996432111 1223467778888999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++..|..++
T Consensus 148 ~~~v~~~~~~l~~~l 162 (164)
T cd04175 148 KINVNEIFYDLVRQI 162 (164)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987653
No 333
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.43 E-value=1e-06 Score=89.28 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=80.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.+||+.+|+..+..+-.. .+. ..-++|+|+|++.+.++ +.+. .|+..++.+..
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~----~a~~~ilv~d~~~~~s~-~~~~~~w~~~i~~~~~------------------- 104 (175)
T cd01874 51 LGLFDTAGQEDYDRLRPL--SYP----QTDVFLVCFSVVSPSSF-ENVKEKWVPEITHHCP------------------- 104 (175)
T ss_pred EEEEECCCccchhhhhhh--hcc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 379999999776655444 222 22389999999999998 6664 68766543100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC------hhH-HHHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE------PNK-KRIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~------~E~-~d~Iq~~lR~fcl~yGA- 543 (890)
.+|+||||||+|+..+-+ .+. +..-....+.+|..+|+
T Consensus 105 ----------------------------------~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 105 ----------------------------------KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ----------------------------------CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 379999999999864211 000 11224567778889984
Q ss_pred ceeEeccCChhhHHHHHHHHhhh
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr 566 (890)
..|.||+|++.|++.++..+.-.
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 79999999999999999887654
No 334
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.42 E-value=2.2e-06 Score=89.34 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=40.8
Q ss_pred EEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|+||+|+.... ..+.....+.++.+ ..++++++|||++|+|+++++++|...+
T Consensus 141 ~~~~~k~d~~~~~-~~~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 141 LLVINKIDLAPMV-GADLGVMERDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred EEEEEhhhccccc-cccHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 8999999996311 12344445555555 3468899999999999999999998664
No 335
>KOG0462|consensus
Probab=98.42 E-value=3.5e-06 Score=97.08 Aligned_cols=160 Identities=19% Similarity=0.105 Sum_probs=102.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCCC-----------------CCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDT-----------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGTS 95 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~-----------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~ 95 (890)
.+-.++.||-----|||||..+|+...+. -.-++++--..............++++||||+-.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 44578899999999999999999873221 1223333211111112222223899999999987
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP 175 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~ 175 (890)
|..-+... + .-++++|+|+|.+.--.- ..+..++-.+ + .+
T Consensus 138 Fs~EVsRs----l--aac~G~lLvVDA~qGvqA-QT~anf~lAf----e-----------------------------~~ 177 (650)
T KOG0462|consen 138 FSGEVSRS----L--AACDGALLVVDASQGVQA-QTVANFYLAF----E-----------------------------AG 177 (650)
T ss_pred ccceeheh----h--hhcCceEEEEEcCcCchH-HHHHHHHHHH----H-----------------------------cC
Confidence 74433332 1 138999999999985443 2333322211 1 26
Q ss_pred CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+-+|.|.||+|+-. +.-+.....+..+-...+...+++|||+|.|++++.+.|.+.+
T Consensus 178 L~iIpVlNKIDlp~----adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 178 LAIIPVLNKIDLPS----ADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred CeEEEeeeccCCCC----CCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 78999999999942 1222233444444444566799999999999999999998886
No 336
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.41 E-value=2.1e-06 Score=107.83 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=68.9
Q ss_pred EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649 84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 163 (890)
Q Consensus 84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~ 163 (890)
.+.+|||||++.|..+.... +. .+|++++|+|+++.-.- .....++.++
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g----~~--~aDivlLVVDa~~Gi~~--qT~e~I~~lk----------------------- 575 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRG----GS--LADLAVLVVDINEGFKP--QTIEAINILR----------------------- 575 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhh----cc--cCCEEEEEEECcccCCH--hHHHHHHHHH-----------------------
Confidence 48999999998887665444 12 48999999999973221 1111111111
Q ss_pred cccccccccCCCCcEEEEeecccCCCCCCcc-----------hhhhhHHHHH--------HHHH------------Hc--
Q psy11649 164 EHRDKGLIRTFPVPLILIGGKYDLFENLEPN-----------KKRIAVQCLR--------YLAH------------VN-- 210 (890)
Q Consensus 164 ~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e-----------~r~~i~~~lr--------~la~------------~~-- 210 (890)
..++|+++|+||+|+....... +.+...+++. +++. .+
T Consensus 576 ---------~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~ 646 (1049)
T PRK14845 576 ---------QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTR 646 (1049)
T ss_pred ---------HcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCC
Confidence 1258999999999986321100 0011111111 1111 11
Q ss_pred CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 211 GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 211 Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.++++++||++|.|++.|.++|..+.
T Consensus 647 ~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 647 TVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35799999999999999998886543
No 337
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.41 E-value=9.9e-07 Score=108.39 Aligned_cols=85 Identities=9% Similarity=-0.058 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-------------C-------CCCCccceeEEEEEEe-ccccceEEEEEEcCCC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND-------------T-------PKPTLALEYIYARKSG-KTVMKDICHLWELGSG 93 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~-------------~-------~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~ 93 (890)
..+|+++|..++|||||+++|+...+ . ...|+...+ ..... ....+.++++|||||+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~--~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAAN--VSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhccc--ceeEEeecCCceEEEEEeCCCc
Confidence 56899999999999999999975210 0 111222221 11111 1122348999999999
Q ss_pred cchhhHHhhhhccccccccCcEEEEEEeCCCcCc
Q psy11649 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS 127 (890)
Q Consensus 94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S 127 (890)
..|....... ++ .+|++|+|+|......
T Consensus 97 ~~f~~~~~~a----l~--~aD~~llVvda~~g~~ 124 (720)
T TIGR00490 97 VDFGGDVTRA----MR--AVDGAIVVVCAVEGVM 124 (720)
T ss_pred cccHHHHHHH----HH--hcCEEEEEEecCCCCC
Confidence 8876555444 11 4999999999987543
No 338
>KOG0078|consensus
Probab=98.41 E-value=6.1e-07 Score=92.83 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=103.6
Q ss_pred ccccCCCCceeeccccccccccccCcccccCceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHH
Q psy11649 360 AVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTE 439 (890)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~s 439 (890)
+.++.|...|-+=|=.+-. ..-+ -+..+-+|+-.|+..+..+..- ---+.+-||+|.|+|.-+++ +-
T Consensus 36 ~f~~~~~sTiGIDFk~kti---~l~g---~~i~lQiWDtaGQerf~ti~~s------YyrgA~gi~LvyDitne~Sf-en 102 (207)
T KOG0078|consen 36 SFNTSFISTIGIDFKIKTI---ELDG---KKIKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDITNEKSF-EN 102 (207)
T ss_pred cCcCCccceEEEEEEEEEE---EeCC---eEEEEEEEEcccchhHHHHHHH------HHhhcCeeEEEEEccchHHH-HH
Confidence 3345566666565544432 2222 4556699999999776654332 12245579999999999999 77
Q ss_pred HHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccc
Q psy11649 440 AETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLF 519 (890)
Q Consensus 440 L~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~ 519 (890)
+..|++.+++|... +||+++||+|+|+.
T Consensus 103 i~~W~~~I~e~a~~----------------------------------------------------~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 103 IRNWIKNIDEHASD----------------------------------------------------DVVKILVGNKCDLE 130 (207)
T ss_pred HHHHHHHHHhhCCC----------------------------------------------------CCcEEEeecccccc
Confidence 77899999987652 48999999999997
Q ss_pred cCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 520 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 520 ~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
. ++..=-....+||..||...+.||+|.+.||+..+-=|...+..
T Consensus 131 ~-----~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 131 E-----KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred c-----cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 4 33333456778999999999999999999999988777777664
No 339
>PTZ00369 Ras-like protein; Provisional
Probab=98.40 E-value=1.3e-06 Score=89.52 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=84.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+. ..-++++|+|+|.+.++ +.++.|+..+......
T Consensus 55 l~i~Dt~G~~~~~~l~~~--~~~----~~d~iilv~D~s~~~s~-~~~~~~~~~i~~~~~~------------------- 108 (189)
T PTZ00369 55 LDILDTAGQEEYSAMRDQ--YMR----TGQGFLCVYSITSRSSF-EEIASFREQILRVKDK------------------- 108 (189)
T ss_pred EEEEeCCCCccchhhHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 579999999777766554 222 12378999999999997 8888998766542110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|+||||||+|+..... .-+.....++..+++..|.||++.
T Consensus 109 --------------------------------~~~piiiv~nK~Dl~~~~~-----i~~~~~~~~~~~~~~~~~e~Sak~ 151 (189)
T PTZ00369 109 --------------------------------DRVPMILVGNKCDLDSERQ-----VSTGEGQELAKSFGIPFLETSAKQ 151 (189)
T ss_pred --------------------------------CCCCEEEEEECcccccccc-----cCHHHHHHHHHHhCCEEEEeeCCC
Confidence 1489999999999853211 112234556777899999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|..++..
T Consensus 152 ~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 152 RVNVDEAFYELVREIRK 168 (189)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 340
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.40 E-value=1.2e-06 Score=87.21 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=81.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|++.|+..+..+... .+.. .-++++|+|++.+.++ +.++.|...+..+...
T Consensus 56 l~i~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 109 (170)
T cd04116 56 LQIWDTAGQERFRSLRTP--FYRG----SDCCLLTFAVDDSQSF-QNLSNWKKEFIYYADV------------------- 109 (170)
T ss_pred EEEEeCCChHHHHHhHHH--HhcC----CCEEEEEEECCCHHHH-HhHHHHHHHHHHhccc-------------------
Confidence 378999998766655544 2221 2268899999999988 8899998876543221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K 551 (890)
..+-++|++|||||+|+.. .....+.++.+|..+| ...+.||+|
T Consensus 110 -----------------------------~~~~~~piilv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~e~Sa~ 154 (170)
T cd04116 110 -----------------------------KEPESFPFVVLGNKNDIPE------RQVSTEEAQAWCRENGDYPYFETSAK 154 (170)
T ss_pred -----------------------------ccCCCCcEEEEEECccccc------cccCHHHHHHHHHHCCCCeEEEEECC
Confidence 0012589999999999862 1223445677888888 478999999
Q ss_pred ChhhHHHHHHHHhhh
Q psy11649 552 DPGLVKRTRDILNHY 566 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr 566 (890)
.+.|++.++..+.-.
T Consensus 155 ~~~~v~~~~~~~~~~ 169 (170)
T cd04116 155 DATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999888643
No 341
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.39 E-value=8.6e-06 Score=87.91 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=68.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh-------hHHhhh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL-------EVASLF 103 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~-------~Li~~~ 103 (890)
...+|+|+|.+|||||||+|+|++... ...+..+......... .....+.+|||||..... ......
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~---~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT---VDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE---ECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 478999999999999999999999532 1111222222211111 123479999999975431 111111
Q ss_pred hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
.. .+...+.+++++|..++... +-..-...++.+.+.... ..-.++++|.|
T Consensus 107 ~~-~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~---------------------------~i~~~~ivV~T 157 (249)
T cd01853 107 KR-YLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGP---------------------------SIWRNAIVVLT 157 (249)
T ss_pred HH-HHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhCh---------------------------hhHhCEEEEEe
Confidence 00 01011377888887665432 211222344444443221 11257999999
Q ss_pred cccCC
Q psy11649 184 KYDLF 188 (890)
Q Consensus 184 K~Dl~ 188 (890)
|+|..
T Consensus 158 ~~d~~ 162 (249)
T cd01853 158 HAASS 162 (249)
T ss_pred CCccC
Confidence 99985
No 342
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.39 E-value=1.3e-06 Score=92.68 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=80.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.++|+.+|+..+..|... ... ..-+++||+|++.|.++ +.+ +.|...++.+.
T Consensus 51 L~iwDt~G~e~~~~l~~~--~~~----~~d~illvfdis~~~Sf-~~i~~~w~~~~~~~~-------------------- 103 (222)
T cd04173 51 LNMWDTSGSSYYDNVRPL--AYP----DSDAVLICFDISRPETL-DSVLKKWQGETQEFC-------------------- 103 (222)
T ss_pred EEEEeCCCcHHHHHHhHH--hcc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC--------------------
Confidence 489999999776665444 222 22379999999999998 555 67775433210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH------H-HHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK------K-RIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~------~-d~Iq~~lR~fcl~yGA- 543 (890)
-++|+||||||+|+..+...-. . -.-......+|.++||
T Consensus 104 ---------------------------------~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 104 ---------------------------------PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred ---------------------------------CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 0379999999999975321100 0 1224578899999998
Q ss_pred ceeEeccCChhh-HHHHHHHHhhhh
Q psy11649 544 SLLFHSSLDPGL-VKRTRDILNHYA 567 (890)
Q Consensus 544 sL~ftS~K~~~n-~~~l~kyi~hr~ 567 (890)
+.|-||+|.+.| ++.++....-..
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 799999998876 988877766544
No 343
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.37 E-value=1.3e-06 Score=85.23 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=79.9
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..++|+.+|+..+..+... .+. + .-++++|+|++.+.++ +.++.|...++....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 103 (162)
T cd04123 50 DLAIWDTAGQERYHALGPI--YYR--D--ADGAILVYDITDADSF-QKVKKWIKELKQMRG------------------- 103 (162)
T ss_pred EEEEEECCchHHHHHhhHH--Hhc--c--CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence 3589999998655554444 222 1 2378999999999987 778888665543110
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|++||+||+|+..... .-.+.++.++..+|+.++.+|++
T Consensus 104 ---------------------------------~~~piiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~ 145 (162)
T cd04123 104 ---------------------------------NNISLVIVGNKIDLERQRV-----VSKSEAEEYAKSVGAKHFETSAK 145 (162)
T ss_pred ---------------------------------CCCeEEEEEECcccccccC-----CCHHHHHHHHHHcCCEEEEEeCC
Confidence 1479999999999873211 11244555677889999999999
Q ss_pred ChhhHHHHHHHHhhhh
Q psy11649 552 DPGLVKRTRDILNHYA 567 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~ 567 (890)
.+.+++.+++.|...+
T Consensus 146 ~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 146 TGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999886543
No 344
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.36 E-value=2.2e-06 Score=84.98 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=80.4
Q ss_pred eEEEEeCCCccc-ccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSR-LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~-~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.++|+..|.... ...... .+.. .-++|+|+|++.+.++ +.++.|+..++.....
T Consensus 49 ~~i~D~~g~~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------ 103 (165)
T cd04146 49 LEILDTAGQQQADTEQLER--SIRW----ADGFVLVYSITDRSSF-DEISQLKQLIREIKKR------------------ 103 (165)
T ss_pred EEEEECCCCcccccchHHH--HHHh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcC------------------
Confidence 479999998631 121222 1221 2378999999999997 9999999887653220
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
...+|++|||||+|+... ...-.+.+.++|..+|+..+.+|++
T Consensus 104 --------------------------------~~~~piilv~nK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sa~ 146 (165)
T cd04146 104 --------------------------------DREIPVILVGNKADLLHY-----RQVSTEEGEKLASELGCLFFEVSAA 146 (165)
T ss_pred --------------------------------CCCCCEEEEEECCchHHh-----CccCHHHHHHHHHHcCCEEEEeCCC
Confidence 013799999999997532 1222355677888999999999999
Q ss_pred Ch-hhHHHHHHHHhhhh
Q psy11649 552 DP-GLVKRTRDILNHYA 567 (890)
Q Consensus 552 ~~-~n~~~l~kyi~hr~ 567 (890)
.+ .|++.++..+...+
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 147 EDYDGVHSVFHELCREV 163 (165)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 98 59999999887654
No 345
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.36 E-value=2e-06 Score=84.95 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=81.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|...+..+... .+.. .-.+++|+|.+.|.++ +.+..|...+......
T Consensus 50 l~i~Dt~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 103 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQ--YMRT----GEGFLLVYSITDRQSF-EEIKKFREQILRVKDR------------------- 103 (164)
T ss_pred EEEEECCCcccchHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 478999998776665554 2222 2378999999999987 8888887765432110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
..+|+||||||+|+-.+- ......+..++..+++..|.+|++.
T Consensus 104 --------------------------------~~~pii~v~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (164)
T smart00173 104 --------------------------------DDVPIVLVGNKCDLESER-----VVSTEEGKELARQWGCPFLETSAKE 146 (164)
T ss_pred --------------------------------CCCCEEEEEECccccccc-----eEcHHHHHHHHHHcCCEEEEeecCC
Confidence 137999999999986421 1122345566777899999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++..|...+
T Consensus 147 ~~~i~~l~~~l~~~~ 161 (164)
T smart00173 147 RVNVDEAFYDLVREI 161 (164)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987653
No 346
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.36 E-value=2.6e-06 Score=86.24 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=79.9
Q ss_pred EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+|+.+|+..+..+.+. .+. ..-++|||+|++.|.++ +.+ +.|+..++.+..
T Consensus 52 ~i~Dt~G~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~sf-~~~~~~~~~~~~~~~~-------------------- 104 (174)
T cd01871 52 GLWDTAGQEDYDRLRPL--SYP----QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHCP-------------------- 104 (174)
T ss_pred EEEECCCchhhhhhhhh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC--------------------
Confidence 69999999776665554 222 23389999999999998 666 578776654100
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-hH------HHHHHHHHHHHHHHcCC-c
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-NK------KRIAVQCLRYLAHVNGA-S 544 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E~------~d~Iq~~lR~fcl~yGA-s 544 (890)
.+|+||||||+|+...-.. +. ...-.+....+|..+|+ .
T Consensus 105 ---------------------------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 151 (174)
T cd01871 105 ---------------------------------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 151 (174)
T ss_pred ---------------------------------CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence 2799999999998632110 00 01224556678999996 7
Q ss_pred eeEeccCChhhHHHHHHHHhh
Q psy11649 545 LLFHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 545 L~ftS~K~~~n~~~l~kyi~h 565 (890)
.+-||+|++.|++.++..+..
T Consensus 152 ~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 152 YLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred EEEecccccCCHHHHHHHHHH
Confidence 788999999999999988865
No 347
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.36 E-value=1.5e-06 Score=84.73 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=83.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|...+..+... .+.. .-++++|+|++.|.++ +.+..|...+......
T Consensus 49 ~~l~D~~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 102 (160)
T cd00876 49 LDILDTAGQEEFSAMRDL--YIRQ----GDGFILVYSITDRESF-EEIKGYREQILRVKDD------------------- 102 (160)
T ss_pred EEEEECCChHHHHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 478999998766665555 2222 2378999999999887 7777776655543220
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|++||+||+|.... .....+.++.++..+++..+.+|++.
T Consensus 103 --------------------------------~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~ 145 (160)
T cd00876 103 --------------------------------EDIPIVLVGNKCDLENE-----RQVSKEEGKALAKEWGCPFIETSAKD 145 (160)
T ss_pred --------------------------------CCCcEEEEEECCccccc-----ceecHHHHHHHHHHcCCcEEEeccCC
Confidence 15899999999999851 12234667888888899999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++.+|...+
T Consensus 146 ~~~i~~l~~~l~~~i 160 (160)
T cd00876 146 NINIDEVFKLLVREI 160 (160)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998753
No 348
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.36 E-value=1.2e-06 Score=86.47 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=80.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+. ..-++++|+|++.+.++ +.++.|+..++.+.
T Consensus 54 l~i~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~--------------------- 105 (164)
T cd04101 54 LFIFDSAGQELYSDMVSN--YWE----SPSVFILVYDVSNKASF-ENCSRWVNKVRTAS--------------------- 105 (164)
T ss_pred EEEEECCCHHHHHHHHHH--HhC----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC---------------------
Confidence 379999998666665555 232 23479999999999987 88899988776521
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...-+ .-...++.++..+|...+.+|++.
T Consensus 106 --------------------------------~~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (164)
T cd04101 106 --------------------------------KHMPGVLVGNKMDLADKAE-----VTDAQAQAFAQANQLKFFKTSALR 148 (164)
T ss_pred --------------------------------CCCCEEEEEECcccccccC-----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence 1378999999999863211 111223556777889999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.+++.++..|...+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (164)
T cd04101 149 GVGYEEPFESLARAF 163 (164)
T ss_pred CCChHHHHHHHHHHh
Confidence 999999998887653
No 349
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.35 E-value=1.5e-06 Score=85.67 Aligned_cols=110 Identities=20% Similarity=0.252 Sum_probs=81.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+.+|...+..+.+. -+. + .-.+++|+|++.+.++ +.+..|+..++.+..
T Consensus 51 l~l~D~~G~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------- 103 (161)
T cd04113 51 LQIWDTAGQERFRSVTRS--YYR--G--AAGALLVYDITNRTSF-EALPTWLSDARALAS-------------------- 103 (161)
T ss_pred EEEEECcchHHHHHhHHH--Hhc--C--CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 379999998666554433 122 1 2379999999999998 788889877654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|++||+||+|+... ...-.+.++.++..+|...+.+|+|.
T Consensus 104 --------------------------------~~~~iivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (161)
T cd04113 104 --------------------------------PNIVVILVGNKSDLADQ-----REVTFLEASRFAQENGLLFLETSALT 146 (161)
T ss_pred --------------------------------CCCeEEEEEEchhcchh-----ccCCHHHHHHHHHHcCCEEEEEECCC
Confidence 03789999999999741 11223445677778899999999999
Q ss_pred hhhHHHHHHHHhhh
Q psy11649 553 PGLVKRTRDILNHY 566 (890)
Q Consensus 553 ~~n~~~l~kyi~hr 566 (890)
+.|++.++..+..+
T Consensus 147 ~~~i~~~~~~~~~~ 160 (161)
T cd04113 147 GENVEEAFLKCARS 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988765
No 350
>KOG3886|consensus
Probab=98.34 E-value=1.2e-06 Score=91.60 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhhhcccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK---NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLFSSFSLTA 110 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~---~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~ 110 (890)
.+||+++|..|+|||||-..+..+ .+...++-++|.....+. .-+...+++||++||+.+ +.....-+...++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~R--flGnl~LnlwDcGgqe~fmen~~~~q~d~iF~- 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVR--FLGNLVLNLWDCGGQEEFMENYLSSQEDNIFR- 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhh--hhhhheeehhccCCcHHHHHHHHhhcchhhhe-
Confidence 468999999999999987765532 222334444443222221 112226999999999754 3332222333344
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+.+++|.|||++..+-- ..+..+...+...+.. ....-+.....|+|+..
T Consensus 81 -nV~vli~vFDves~e~~-~D~~~yqk~Le~ll~~---------------------------SP~AkiF~l~hKmDLv~- 130 (295)
T KOG3886|consen 81 -NVQVLIYVFDVESREME-KDFHYYQKCLEALLQN---------------------------SPEAKIFCLLHKMDLVQ- 130 (295)
T ss_pred -eheeeeeeeeccchhhh-hhHHHHHHHHHHHHhc---------------------------CCcceEEEEEeechhcc-
Confidence 68899999999876432 3444444333332221 22366888899999974
Q ss_pred CCcchhhhhH----HHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAV----QCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 191 ~d~e~r~~i~----~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.++++.+. +.++.+....++.++.||.-+....+..-..+.++
T Consensus 131 --~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwDetl~KAWS~iv~~l 177 (295)
T KOG3886|consen 131 --EDARELIFQRRKEDLRRLSRPLECKCFPTSIWDETLYKAWSSIVYNL 177 (295)
T ss_pred --cchHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Confidence 22444333 34445555566778888887755555544444433
No 351
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.34 E-value=1.9e-06 Score=86.58 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=79.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|+..+..+.+. .+. + .-++|+|+|++.|.++-+..+.|+..++.+.
T Consensus 50 ~~i~Dt~G~~~~~~~~~~--~~~--~--a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--------------------- 102 (173)
T cd04130 50 LQLCDTAGQDEFDKLRPL--CYP--D--TDVFLLCFSVVNPSSFQNISEKWIPEIRKHN--------------------- 102 (173)
T ss_pred EEEEECCCChhhcccccc--ccC--C--CcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---------------------
Confidence 368999999776665554 222 1 2278999999999999444467877765310
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC-------hhHHHHHHHHHHHHHHHcCC-c
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE-------PNKKRIAVQCLRYLAHVNGA-S 544 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~-------~E~~d~Iq~~lR~fcl~yGA-s 544 (890)
-++|++|||||+|+..... ..++..-++.++.||..+|+ .
T Consensus 103 --------------------------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 103 --------------------------------PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred --------------------------------CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 0378999999999864321 01122234567789999998 8
Q ss_pred eeEeccCChhhHHHHHHHH
Q psy11649 545 LLFHSSLDPGLVKRTRDIL 563 (890)
Q Consensus 545 L~ftS~K~~~n~~~l~kyi 563 (890)
.+.||+|.+.|++.++.-+
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 151 YIECSALTQKNLKEVFDTA 169 (173)
T ss_pred EEEEeCCCCCCHHHHHHHH
Confidence 8999999999999987644
No 352
>KOG0087|consensus
Probab=98.34 E-value=1e-06 Score=91.17 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=104.1
Q ss_pred CCCCceeeccccccccccccCcccccCcee-EEEEeCCCccccccccccccccccccc-ceEEEEEEeCCCchhHHHHHH
Q psy11649 364 DYNKPIFVPFGTDSVASIEGTTQYVTADIC-HLWELGSGTSRLEVASLFSSFSLTAQS-GFTLVLMLDLSRLNSLWTEAE 441 (890)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~kdi~-~vW~L~G~~~~~~Ll~~~~al~~~~~~-~~~viivlDlS~Pw~l~~sL~ 441 (890)
|---+|-|-|+|+.+. | -.|.|- .||+=.|+.-+. |+++.-.+ ..-+++|.|+||.-++ +.++
T Consensus 42 ~SksTIGvef~t~t~~-v------d~k~vkaqIWDTAGQERyr-------AitSaYYrgAvGAllVYDITr~~Tf-env~ 106 (222)
T KOG0087|consen 42 ESKSTIGVEFATRTVN-V------DGKTVKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDITRRQTF-ENVE 106 (222)
T ss_pred ccccceeEEEEeecee-e------cCcEEEEeeecccchhhhc-------cccchhhcccceeEEEEechhHHHH-HHHH
Confidence 4445666777766543 2 234443 899999995554 45555543 4569999999999999 8999
Q ss_pred HHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC
Q psy11649 442 TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN 521 (890)
Q Consensus 442 ~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~ 521 (890)
+|++.||+|.|+ -|+|++||+|+|+-+
T Consensus 107 rWL~ELRdhad~----------------------------------------------------nivimLvGNK~DL~~- 133 (222)
T KOG0087|consen 107 RWLKELRDHADS----------------------------------------------------NIVIMLVGNKSDLNH- 133 (222)
T ss_pred HHHHHHHhcCCC----------------------------------------------------CeEEEEeecchhhhh-
Confidence 999999999885 288999999999974
Q ss_pred CChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 522 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 522 ~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
.+..-.+-.+.||...|-..+.||+.+..||...+.-++..+|.
T Consensus 134 ----lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 134 ----LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred ----ccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHH
Confidence 11222345678999999999999999999999999999999997
No 353
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.33 E-value=1.3e-05 Score=88.72 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=51.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF 106 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~ 106 (890)
...+|+|+|.+||||||++|+|++... +...+.+..-. ..... ..+.++.||||||......+.... +.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~--~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~- 112 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPM--MVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNIIKR- 112 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--EEEEE-ECCeEEEEEECCCCCchHHHHHHHHHHHHH-
Confidence 478999999999999999999998532 11122221111 11111 233489999999987542222211 10
Q ss_pred ccccccCcEEEEEEeCCC
Q psy11649 107 SLTAQSGFTLVLMLDLSR 124 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSn 124 (890)
.+...+.|++++|..++.
T Consensus 113 ~l~~~g~DvVLyV~rLD~ 130 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDA 130 (313)
T ss_pred HhhcCCCCEEEEEeccCc
Confidence 011124899999966553
No 354
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.32 E-value=1.1e-05 Score=91.06 Aligned_cols=249 Identities=13% Similarity=0.102 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEecc----------cc----ceEEEEEEcCCCcch--
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKT----------VM----KDICHLWELGSGTSR-- 96 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~----------~~----k~~l~IwDlpG~~~~-- 96 (890)
++|.+||.||||||||+|+|++.. .++ |..+++.......... .. ..++.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny-pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY-PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc-ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999953 233 4444443221111110 00 125899999996532
Q ss_pred --hhHHhhh-hccccccccCcEEEEEEeCCCcC---------chHHHHHHHHHHH--------HHHHhhhhhhhhh----
Q psy11649 97 --LEVASLF-SSFSLTAQSGFTLVLMLDLSRLN---------SLWTEAETFLAKF--------RAIFESNESVREK---- 152 (890)
Q Consensus 97 --~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~---------S~~~~L~~wlq~I--------~e~~~~ll~~~~~---- 152 (890)
+.+...+ .. ++ .+|+++.|+|.+.-. .-...+.....++ .+.++++......
T Consensus 82 ~g~glg~~fL~~--i~--~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~~~ 157 (364)
T PRK09601 82 KGEGLGNQFLAN--IR--EVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGDKE 157 (364)
T ss_pred hHHHHHHHHHHH--HH--hCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchh
Confidence 2333333 11 22 499999999986311 1111222111111 1222221110000
Q ss_pred ----ccc-------ccccc--ccccc--cccc----cccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe
Q psy11649 153 ----RGS-------FEHFR--TADEH--RDKG----LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS 213 (890)
Q Consensus 153 ----~~~-------l~~~~--~~~~~--~d~~----li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~ 213 (890)
... +++.. ...+. .+.. ..-....|+++|+|+.|. ++. ........+++++..+|.+
T Consensus 158 ~~~e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~--~~~--~~~~~~~~i~~~~~~~~~~ 233 (364)
T PRK09601 158 AKAELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDED--DLA--DGNPYVKKVREIAAKEGAE 233 (364)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCcc--ccc--cccHHHHHHHHHHHHcCCe
Confidence 000 11100 00000 0111 111234899999999984 111 1112345677777778989
Q ss_pred EEEEeccCCCCHH-----HHHHHHHHHHhccC-ccc--ccccCC-CCcccccCCCccccccccCCCCCCCCccccccccc
Q psy11649 214 LLFHSSLDPGLVK-----RTRDILNHYAFSSH-LAS--AVNFDY-NKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFN 284 (890)
Q Consensus 214 l~etSAK~~~nId-----~Lk~~I~~~lf~~~-~~~--~~~~d~-~kpl~Ip~G~Ds~~~I~~pl~r~~~~~~~~~~~~~ 284 (890)
++.+||+-...+. +-++++...-...+ ... ....+. .-..+-+.|.+.. ..=+++++++-.+.+..+|
T Consensus 234 ~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~ev---rawti~~GstA~~aAg~IH 310 (364)
T PRK09601 234 VVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEV---RAWTIKKGTTAPQAAGVIH 310 (364)
T ss_pred EEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeE---EEEEeCCCCchHHHhhcch
Confidence 9999985433331 12222222110000 000 000000 0112334565543 2223667888888888889
Q ss_pred cccchhHHHhhc
Q psy11649 285 RSRGMKFEKKRG 296 (890)
Q Consensus 285 ~~~~~~f~~~~~ 296 (890)
.++...|-++.+
T Consensus 311 sD~~kgFI~AeV 322 (364)
T PRK09601 311 TDFEKGFIRAEV 322 (364)
T ss_pred hhHhhccEEEEE
Confidence 999888876665
No 355
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.32 E-value=5.1e-06 Score=89.07 Aligned_cols=124 Identities=12% Similarity=0.047 Sum_probs=59.7
Q ss_pred EEEEEEcCCCcchhhHHhhhh--ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccc
Q psy11649 84 ICHLWELGSGTSRLEVASLFS--SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT 161 (890)
Q Consensus 84 ~l~IwDlpG~~~~~~Li~~~r--~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~ 161 (890)
...|+|||||.++-......+ -+.+.....-++++++|.....+--.-+..++..+.-..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~------------------ 153 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML------------------ 153 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH------------------
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh------------------
Confidence 689999999987633332220 000110125689999998765542122222222222111
Q ss_pred cccccccccccCCCCcEEEEeecccCCCCCCcchhhh--------------hHHHHHHHHH---HcC-C-eEEEEeccCC
Q psy11649 162 ADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI--------------AVQCLRYLAH---VNG-A-SLLFHSSLDP 222 (890)
Q Consensus 162 ~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~--------------i~~~lr~la~---~~G-a-~l~etSAK~~ 222 (890)
.+++|.|.|.||+|+.....+...+. .....+.++. .++ . .++.+|++++
T Consensus 154 -----------~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~ 222 (238)
T PF03029_consen 154 -----------RLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDG 222 (238)
T ss_dssp -----------HHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTT
T ss_pred -----------hCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCCh
Confidence 13689999999999974110000000 1112223333 234 3 6999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy11649 223 GLVKRTRDILNHYA 236 (890)
Q Consensus 223 ~nId~Lk~~I~~~l 236 (890)
.++++|...|.+..
T Consensus 223 ~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 223 EGMEELLAAIDKAN 236 (238)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887653
No 356
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.32 E-value=3.4e-06 Score=87.61 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=72.1
Q ss_pred eEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649 422 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL 501 (890)
Q Consensus 422 ~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 501 (890)
-++|+|+|.+.|+++ +.++.|++.+.++...
T Consensus 82 d~iilv~D~~~~~S~-~~~~~~~~~i~~~~~~------------------------------------------------ 112 (198)
T cd04142 82 RAFILVYDICSPDSF-HYVKLLRQQILETRPA------------------------------------------------ 112 (198)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhccc------------------------------------------------
Confidence 379999999999998 8888888776653320
Q ss_pred cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH-HcCCceeEeccCChhhHHHHHHHHhhhhcCCCCCcc
Q psy11649 502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASA 575 (890)
Q Consensus 502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl-~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~~~~~ 575 (890)
.+-++|+||||||+|+... .....+. ++.+|. .+++..|.||+|.+.|++.++..+...++.-..+.+
T Consensus 113 -~~~~~piiivgNK~Dl~~~-~~~~~~~----~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~ 181 (198)
T cd04142 113 -GNKEPPIVVVGNKRDQQRH-RFAPRHV----LSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRSTH 181 (198)
T ss_pred -CCCCCCEEEEEECcccccc-ccccHHH----HHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCCcc
Confidence 0114899999999999642 1111112 334443 468999999999999999999999999987555433
No 357
>KOG0084|consensus
Probab=98.30 E-value=2.6e-06 Score=87.37 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=91.0
Q ss_pred cCce-eEEEEeCCCccccccccccccccccccc-ceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccc
Q psy11649 389 TADI-CHLWELGSGTSRLEVASLFSSFSLTAQS-GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH 466 (890)
Q Consensus 389 ~kdi-~~vW~L~G~~~~~~Ll~~~~al~~~~~~-~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~ 466 (890)
.|+| +.||+-.|+..++ +++..-.+ .-.||||.|+|+-+++ +.+..|++.++.|...
T Consensus 55 gk~iKlQIWDTAGQERFr-------tit~syYR~ahGii~vyDiT~~~SF-~~v~~Wi~Ei~~~~~~------------- 113 (205)
T KOG0084|consen 55 GKTIKLQIWDTAGQERFR-------TITSSYYRGAHGIIFVYDITKQESF-NNVKRWIQEIDRYASE------------- 113 (205)
T ss_pred ceEEEEEeeeccccHHHh-------hhhHhhccCCCeEEEEEEcccHHHh-hhHHHHHHHhhhhccC-------------
Confidence 4444 5999999995555 34544443 3369999999999999 9999999998886552
Q ss_pred cccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc-e
Q psy11649 467 FRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-L 545 (890)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs-L 545 (890)
+||.++||+|||+- |+.-.-....+.|+..+|-. +
T Consensus 114 ---------------------------------------~v~~lLVGNK~Dl~-----~~~~v~~~~a~~fa~~~~~~~f 149 (205)
T KOG0084|consen 114 ---------------------------------------NVPKLLVGNKCDLT-----EKRVVSTEEAQEFADELGIPIF 149 (205)
T ss_pred ---------------------------------------CCCeEEEeeccccH-----hheecCHHHHHHHHHhcCCcce
Confidence 28899999999986 23333344558999999988 8
Q ss_pred eEeccCChhhHHHHHHHHhhhhcC
Q psy11649 546 LFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 546 ~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
+=||+|.+.|++-.+--|.+.+.-
T Consensus 150 ~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 150 LETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred eecccCCccCHHHHHHHHHHHHHH
Confidence 999999999999998888877764
No 358
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=4.5e-06 Score=94.85 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-----------------CCCCCccceeEEEEEE--eccccceEEEEEEcCCCcc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND-----------------TPKPTLALEYIYARKS--GKTVMKDICHLWELGSGTS 95 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~-----------------~~kptigvdY~f~~~~--g~~~~k~~l~IwDlpG~~~ 95 (890)
-.+..+|--=--|||||..||+...+ ...-++++--.-.+.. ........+|++||||+-.
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 45677788888999999999986210 1122333211111111 1111233899999999876
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP 175 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~ 175 (890)
|.--++.. + .-+.++++|+|.++--.- ..|...+..+. . +
T Consensus 89 FsYEVSRS----L--AACEGalLvVDAsQGveA-QTlAN~YlAle----~-----------------------------~ 128 (603)
T COG0481 89 FSYEVSRS----L--AACEGALLVVDASQGVEA-QTLANVYLALE----N-----------------------------N 128 (603)
T ss_pred eEEEehhh----H--hhCCCcEEEEECccchHH-HHHHHHHHHHH----c-----------------------------C
Confidence 53222111 1 137899999999996543 34544443221 1 5
Q ss_pred CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649 176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.-++-|.||+||-.. + ..+...++..-.|+. .+.+|||+|.||+++.+.|.+.+
T Consensus 129 LeIiPViNKIDLP~A-d------pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 129 LEIIPVLNKIDLPAA-D------PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred cEEEEeeecccCCCC-C------HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhC
Confidence 678999999999521 1 122344455556653 78999999999999999999887
No 359
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.29 E-value=7.4e-06 Score=89.54 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=50.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccc--------------cceEEEEEEcCCCcch----
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTV--------------MKDICHLWELGSGTSR---- 96 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~--------------~k~~l~IwDlpG~~~~---- 96 (890)
|.+||.||||||||+|+|++.. .++ |..+++........... ....++++|+||...-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~-pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY-PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc-cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 5799999999999999999953 233 44444432222221100 0115899999996532
Q ss_pred hhHHhhh-hccccccccCcEEEEEEeCC
Q psy11649 97 LEVASLF-SSFSLTAQSGFTLVLMLDLS 123 (890)
Q Consensus 97 ~~Li~~~-r~~~~~~~~ad~IIIV~DlS 123 (890)
..+...+ .. ++ .+|+++.|+|..
T Consensus 80 ~glg~~fL~~--i~--~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSH--IR--EVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHH--HH--hCCEEEEEEeCc
Confidence 2333334 11 12 499999999875
No 360
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.29 E-value=9e-06 Score=91.09 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=38.0
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHHHHHH-------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-------NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~-------~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.-++|+||+|+... ...+....+++..... +..+++.+||+++.|+++|.+.|....
T Consensus 196 aDIiVVNKaDl~~~---~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 196 ADLIVINKADGDNK---TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred hheEEeehhcccch---hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34899999998631 1111222233332221 236799999999999999999998875
No 361
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.29 E-value=1.9e-05 Score=89.55 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=97.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC----C--------------CCCCCC---ccceeEE---EEEEe--ccccceEEEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK----N--------------DTPKPT---LALEYIY---ARKSG--KTVMKDICHL 87 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~----~--------------~~~kpt---igvdY~f---~~~~g--~~~~k~~l~I 87 (890)
+.+.|.|+|..++|||||+|+|.+. . .+..++ .+.|-.| ..... ...-+.++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3789999999999999999999985 1 111223 2333333 11111 1112237899
Q ss_pred EEcCCCcc--------hhh-----------------HHhhhhccccccccCcEEEEEE-eCC--C--cCchHHHHHHHHH
Q psy11649 88 WELGSGTS--------RLE-----------------VASLFSSFSLTAQSGFTLVLML-DLS--R--LNSLWTEAETFLA 137 (890)
Q Consensus 88 wDlpG~~~--------~~~-----------------Li~~~r~~~~~~~~ad~IIIV~-DlS--n--p~S~~~~L~~wlq 137 (890)
.||+|..- -.. -...-+.+.+. ..++..|+|. |.+ + .+.+.+.-++|++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-EHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-hcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999431 000 00000100000 1278888888 765 1 2233234445555
Q ss_pred HHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEE
Q psy11649 138 KFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFH 217 (890)
Q Consensus 138 ~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~et 217 (890)
++++ .++|+++|.||+|-.. + . .......+..+|+++++.+
T Consensus 175 eLk~--------------------------------~~kPfiivlN~~dp~~---~-e---t~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 175 ELKE--------------------------------LNKPFIILLNSTHPYH---P-E---TEALRQELEEKYDVPVLAM 215 (492)
T ss_pred HHHh--------------------------------cCCCEEEEEECcCCCC---c-h---hHHHHHHHHHHhCCceEEE
Confidence 4433 3799999999999421 1 1 2233456778899998998
Q ss_pred eccCCCCHHHHHHHHHHHHhccCc
Q psy11649 218 SSLDPGLVKRTRDILNHYAFSSHL 241 (890)
Q Consensus 218 SAK~~~nId~Lk~~I~~~lf~~~~ 241 (890)
|+.. -.-+.+...+.+.+|..|.
T Consensus 216 ~c~~-l~~~DI~~il~~vL~EFPv 238 (492)
T TIGR02836 216 DVES-MRESDILSVLEEVLYEFPI 238 (492)
T ss_pred EHHH-cCHHHHHHHHHHHHhcCCc
Confidence 8753 2356677778888887653
No 362
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.28 E-value=3.9e-06 Score=85.78 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=84.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+..|+..+..+..+ .+ .. .-.+++++|++.+.++ +.+. .|+..++.+..
T Consensus 51 l~i~Dt~g~~~~~~~~~~--~~--~~--a~~~llv~~i~~~~s~-~~~~~~~~~~i~~~~~------------------- 104 (187)
T cd04129 51 LALWDTAGQEEYERLRPL--SY--SK--AHVILIGFAVDTPDSL-ENVRTKWIEEVRRYCP------------------- 104 (187)
T ss_pred EEEEECCCChhccccchh--hc--CC--CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 379999998655443222 11 12 2378999999999877 6664 68887764211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCC-ChhH---HHHH-HHHHHHHHHHcCC-ce
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENL-EPNK---KRIA-VQCLRYLAHVNGA-SL 545 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~-~~E~---~d~I-q~~lR~fcl~yGA-sL 545 (890)
.+|+||||||+|+..+. ..+. .+++ ......+|..+|+ ..
T Consensus 105 ----------------------------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (187)
T cd04129 105 ----------------------------------NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKY 150 (187)
T ss_pred ----------------------------------CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEE
Confidence 17899999999986432 1111 1111 2345678888997 78
Q ss_pred eEeccCChhhHHHHHHHHhhhhcCCCCCc
Q psy11649 546 LFHSSLDPGLVKRTRDILNHYAFSSHLAS 574 (890)
Q Consensus 546 ~ftS~K~~~n~~~l~kyi~hr~fg~~~~~ 574 (890)
|.||+|.+.|++.++..+...+.+...+.
T Consensus 151 ~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 179 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAALLVRKSE 179 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHhcccCcc
Confidence 99999999999999999998887754443
No 363
>KOG1145|consensus
Probab=98.28 E-value=1e-05 Score=93.37 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=97.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSF 106 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~ 106 (890)
++..=|-++|----|||||+..|-+.. +..-..+| .| .+. ...+..+.+.||||+..|..+...-
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIG-AF---~V~--~p~G~~iTFLDTPGHaAF~aMRaRG--- 221 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIG-AF---TVT--LPSGKSITFLDTPGHAAFSAMRARG--- 221 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceec-eE---EEe--cCCCCEEEEecCCcHHHHHHHHhcc---
Confidence 344458899999999999999987732 12222233 12 122 1223489999999998887776544
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
..-+|.+|+|+...+---- .-.+.|.- ..+.++|+||+.||+|
T Consensus 222 ---A~vtDIvVLVVAadDGVmp-----QT~EaIkh-----------------------------Ak~A~VpiVvAinKiD 264 (683)
T KOG1145|consen 222 ---ANVTDIVVLVVAADDGVMP-----QTLEAIKH-----------------------------AKSANVPIVVAINKID 264 (683)
T ss_pred ---CccccEEEEEEEccCCccH-----hHHHHHHH-----------------------------HHhcCCCEEEEEeccC
Confidence 1137999999988773221 11122222 2234799999999999
Q ss_pred CCCCCCcchhhhhHHHHHHH------HHHcC--CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYL------AHVNG--ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~l------a~~~G--a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
... -++ ....+++ +..+| +.++++||++|.|++.|-+.+.-++
T Consensus 265 kp~-a~p------ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 265 KPG-ANP------EKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CCC-CCH------HHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 742 111 1222332 23455 4689999999999999998886654
No 364
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.28 E-value=2.7e-06 Score=83.53 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=80.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|......++.. -+. ...++++|+|++.|.++ +.++.|+..++...
T Consensus 51 l~~~D~~G~~~~~~~~~~--~~~----~~~~ii~v~d~~~~~s~-~~~~~~~~~~~~~~--------------------- 102 (161)
T cd01861 51 LQLWDTAGQERFRSLIPS--YIR----DSSVAVVVYDITNRQSF-DNTDKWIDDVRDER--------------------- 102 (161)
T ss_pred EEEEECCCcHHHHHHHHH--Hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC---------------------
Confidence 689999998776665554 122 12379999999999987 78888877654310
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
+.++|+++|+||+|+.. +.......+..++..+|+..+.+|++.
T Consensus 103 -------------------------------~~~~~iilv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (161)
T cd01861 103 -------------------------------GNDVIIVLVGNKTDLSD-----KRQVSTEEGEKKAKELNAMFIETSAKA 146 (161)
T ss_pred -------------------------------CCCCEEEEEEEChhccc-----cCccCHHHHHHHHHHhCCEEEEEeCCC
Confidence 01489999999999952 111222335555667889999999999
Q ss_pred hhhHHHHHHHHhhh
Q psy11649 553 PGLVKRTRDILNHY 566 (890)
Q Consensus 553 ~~n~~~l~kyi~hr 566 (890)
+.|++.+++.|...
T Consensus 147 ~~~v~~l~~~i~~~ 160 (161)
T cd01861 147 GHNVKELFRKIASA 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988653
No 365
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.27 E-value=3.6e-06 Score=83.42 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=82.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+++|+.+|...+..+... .+. ...++|+|+|.+.|.++ +.+..|.+.+......
T Consensus 51 ~~~~D~~g~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~------------------- 104 (172)
T cd01862 51 LQIWDTAGQERFQSLGVA--FYR----GADCCVLVYDVTNPKSF-ESLDSWRDEFLIQASP------------------- 104 (172)
T ss_pred EEEEeCCChHHHHhHHHH--Hhc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCc-------------------
Confidence 589999998666554443 121 12379999999999876 7777887643221110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K 551 (890)
.++.++|++||+||+|+... .......++.+|..+| ..++.+|++
T Consensus 105 -----------------------------~~~~~~p~ilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~ 150 (172)
T cd01862 105 -----------------------------SDPENFPFVVLGNKIDLEEK-----RQVSTKKAQQWCQSNGNIPYFETSAK 150 (172)
T ss_pred -----------------------------cCCCCceEEEEEECcccccc-----cccCHHHHHHHHHHcCCceEEEEECC
Confidence 01225899999999999841 1111233566777888 789999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...++.
T Consensus 151 ~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 151 EAINVEQAFETIARKALE 168 (172)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 366
>KOG0092|consensus
Probab=98.26 E-value=3.7e-06 Score=85.90 Aligned_cols=118 Identities=14% Similarity=0.219 Sum_probs=94.1
Q ss_pred EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccccc
Q psy11649 394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH 473 (890)
Q Consensus 394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~ 473 (890)
-||+.+|+..+..|-+| =..-.+ ++|+|.|+++..++ ..++.|.+.|++++..
T Consensus 57 eIWDTAGQERy~slapM--YyRgA~----AAivvYDit~~~SF-~~aK~WvkeL~~~~~~-------------------- 109 (200)
T KOG0092|consen 57 EIWDTAGQERYHSLAPM--YYRGAN----AAIVVYDITDEESF-EKAKNWVKELQRQASP-------------------- 109 (200)
T ss_pred EEEEcCCcccccccccc--eecCCc----EEEEEEecccHHHH-HHHHHHHHHHHhhCCC--------------------
Confidence 49999999999988888 333333 79999999999999 9999999988874431
Q ss_pred ccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649 474 RDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP 553 (890)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~ 553 (890)
.+=|.+||+|+|+-+.- ..--+-.-.||-.-|+..|=||+|.+
T Consensus 110 --------------------------------~~vialvGNK~DL~~~R-----~V~~~ea~~yAe~~gll~~ETSAKTg 152 (200)
T KOG0092|consen 110 --------------------------------NIVIALVGNKADLLERR-----EVEFEEAQAYAESQGLLFFETSAKTG 152 (200)
T ss_pred --------------------------------CeEEEEecchhhhhhcc-----cccHHHHHHHHHhcCCEEEEEecccc
Confidence 14467899999998621 22223455688889999999999999
Q ss_pred hhHHHHHHHHhhhhcCCCCCcc
Q psy11649 554 GLVKRTRDILNHYAFSSHLASA 575 (890)
Q Consensus 554 ~n~~~l~kyi~hr~fg~~~~~~ 575 (890)
.|++.++.-|..+++-..+...
T Consensus 153 ~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 153 ENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred cCHHHHHHHHHHhccCcccccc
Confidence 9999999999999998776644
No 367
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.26 E-value=4.8e-06 Score=81.64 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=82.5
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.+.+|+..|+..+..+... .+... -.+++|+|++.|.++ +.+..|+..+....+
T Consensus 49 ~~~i~D~~g~~~~~~~~~~--~~~~~----~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 102 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDN--YHRSG----EGFLLVFSITDMESF-TATAEFREQILRVKD------------------- 102 (164)
T ss_pred EEEEEECCChhhhhHHHHH--HhhcC----CEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999999877776665 33322 268899999999987 777777766654222
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
+..+|+|||+||+|+...-+ .-....+.+|..+|+..|.+|++
T Consensus 103 --------------------------------~~~~piiiv~NK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T cd04139 103 --------------------------------DDNVPLLLVGNKCDLEDKRQ-----VSSEEAANLARQWGVPYVETSAK 145 (164)
T ss_pred --------------------------------CCCCCEEEEEEccccccccc-----cCHHHHHHHHHHhCCeEEEeeCC
Confidence 12489999999999975211 11223445677789999999999
Q ss_pred ChhhHHHHHHHHhhhh
Q psy11649 552 DPGLVKRTRDILNHYA 567 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~ 567 (890)
.+.+++.++.-|.+++
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999888765
No 368
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.25 E-value=8.8e-06 Score=92.09 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc--CCCCCCCCccc-eeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE--KNDTPKPTLAL-EYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTA 110 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~--~~~~~kptigv-dY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~ 110 (890)
..+|+|+|++|+|||||||.|.| .++.....+|+ +.+..........-..+.+||+||.-....-...| ....+.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~- 113 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY- 113 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG-
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc-
Confidence 57899999999999999999977 22211122221 11000111111111159999999964332233333 111111
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHH-HHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC-C
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETF-LAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL-F 188 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~w-lq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl-~ 188 (890)
.-|.+||+.+ .+| ....-+ .+.++ ..+.|+.+|-+|+|. +
T Consensus 114 -~yD~fiii~s----~rf-~~ndv~La~~i~--------------------------------~~gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 114 -RYDFFIIISS----ERF-TENDVQLAKEIQ--------------------------------RMGKKFYFVRTKVDSDL 155 (376)
T ss_dssp -G-SEEEEEES----SS---HHHHHHHHHHH--------------------------------HTT-EEEEEE--HHHHH
T ss_pred -ccCEEEEEeC----CCC-chhhHHHHHHHH--------------------------------HcCCcEEEEEecccccH
Confidence 3788888775 233 112222 22222 237899999999995 1
Q ss_pred CCC-----CcchhhhhHHHHHHHHHH----cCC---eEEEEeccCCCC--HHHHHHHHHHHH
Q psy11649 189 ENL-----EPNKKRIAVQCLRYLAHV----NGA---SLLFHSSLDPGL--VKRTRDILNHYA 236 (890)
Q Consensus 189 ~d~-----d~e~r~~i~~~lr~la~~----~Ga---~l~etSAK~~~n--Id~Lk~~I~~~l 236 (890)
.+. ..-.+....+.+|+-|.. .|+ .+|.+|+.+-.. ...|.+.+..-+
T Consensus 156 ~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 156 YNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp HHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred hhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 100 000122334455555544 243 488999877554 556766666554
No 369
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.1e-05 Score=91.08 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=96.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC----------------CC-----------------CCCccceeEEEEEEeccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND----------------TP-----------------KPTLALEYIYARKSGKTV 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~----------------~~-----------------kptigvdY~f~~~~g~~~ 80 (890)
...+++|+|...+|||||+-+|+-..+ .- .-+++++-.+.... .
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe---t 82 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE---T 82 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee---c
Confidence 468999999999999999999875211 00 12233332222222 1
Q ss_pred cceEEEEEEcCCCcch-hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy11649 81 MKDICHLWELGSGTSR-LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF 159 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~ 159 (890)
++..+.|.|+||...| ..++.-. .+||+.|+|+|.++.+-- ..+ .--.+.++++-
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGa-------sqAD~aVLVV~a~~~efE-~g~-~~~gQtrEH~~--------------- 138 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGA-------SQADVAVLVVDARDGEFE-AGF-GVGGQTREHAF--------------- 138 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcch-------hhccEEEEEEECCCCccc-ccc-ccCCchhHHHH---------------
Confidence 2337999999996444 3333222 149999999999887420 010 00011122210
Q ss_pred cccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649 160 RTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 160 ~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L 228 (890)
+...+|+ -+||+.||+|+.. .+++.-+.+..++..+-+..| +.|+++|+-+|.|+.+-
T Consensus 139 ----------La~tlGi~~lIVavNKMD~v~-wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 139 ----------LARTLGIKQLIVAVNKMDLVS-WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ----------HHHhcCCceEEEEEEcccccc-cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 0111222 4788999999974 565556666677777777665 45999999999998764
No 370
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.23 E-value=6.2e-06 Score=82.39 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=79.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+.+|...+..+.+. .+. ..-++++|+|++.+.++ +.+ +.|...++...
T Consensus 51 l~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~~~~~~~s~-~~~~~~~~~~~~~~~-------------------- 103 (175)
T cd01870 51 LALWDTAGQEDYDRLRPL--SYP----DTDVILMCFSIDSPDSL-ENIPEKWTPEVKHFC-------------------- 103 (175)
T ss_pred EEEEeCCCchhhhhcccc--ccC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC--------------------
Confidence 479999998666554433 221 12378899999999887 444 56766554310
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-H------HHHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-K------KRIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~------~d~Iq~~lR~fcl~yGA- 543 (890)
-++|+|||+||+|+...-... + ........+.+|..+|.
T Consensus 104 ---------------------------------~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 104 ---------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred ---------------------------------CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 037999999999987421111 0 01224567889999986
Q ss_pred ceeEeccCChhhHHHHHHHHhhh
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr 566 (890)
..++||+|.+.|++.+++.|...
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHH
Confidence 79999999999999999998754
No 371
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.23 E-value=6.6e-06 Score=82.09 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=80.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.++|+..|+..+..+-.. .+. ..-++++|+|++.+.++ +.+ +.|...++.+ .
T Consensus 50 ~~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~~~~~~~s~-~~~~~~~~~~l~~~-~------------------- 102 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPL--SYP----MTDVFLICFSVVNPASF-QNVKEEWVPELKEY-A------------------- 102 (174)
T ss_pred EEEEeCCCcccccccccc--cCC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhh-C-------------------
Confidence 479999999766554444 221 12378889999999988 555 5787766542 1
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA- 543 (890)
.++|++|||||.|+..+-.... ...-+.....+|..+|+
T Consensus 103 ---------------------------------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (174)
T cd04135 103 ---------------------------------PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH 149 (174)
T ss_pred ---------------------------------CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 1378999999999864321111 12224567788889997
Q ss_pred ceeEeccCChhhHHHHHHHHhhhh
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
..+.||++++.|++.++..+.-.+
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHHHh
Confidence 588899999999999998876554
No 372
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.23 E-value=4.2e-06 Score=82.36 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=82.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+.+|+..+..+... .+. + .-++++|+|+++|.++ +.++.|+..++.+..
T Consensus 52 ~~i~D~~G~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------- 104 (163)
T cd01860 52 FEIWDTAGQERYRSLAPM--YYR--G--AAAAIVVYDITSEESF-EKAKSWVKELQRNAS-------------------- 104 (163)
T ss_pred EEEEeCCchHHHHHHHHH--Hhc--c--CCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 589999998666655544 222 1 2379999999999987 888888888765321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...-. .-...+.++|..+|...+-+|++.
T Consensus 105 --------------------------------~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (163)
T cd01860 105 --------------------------------PNIIIALVGNKADLESKRQ-----VSTEEAQEYADENGLLFFETSAKT 147 (163)
T ss_pred --------------------------------CCCeEEEEEECccccccCc-----CCHHHHHHHHHHcCCEEEEEECCC
Confidence 1489999999999874211 111245567888899999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++-++..|..++
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987764
No 373
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.22 E-value=5e-05 Score=79.80 Aligned_cols=166 Identities=19% Similarity=0.205 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CC---CCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hcc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND-TP---KPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSF 106 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~---kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~ 106 (890)
.+|+|+|..||||||++|.+++... .. ...++-... ...+ ...+..+.|+||||.... ..+.... +.-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~--~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQ--KYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-E--EEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccc--eeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 3799999999999999999999632 11 112222221 2222 223347999999995321 1222211 100
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
.....+.+++++|+.++.. + +.-...++.+.+....- .---++||.+..|
T Consensus 78 ~~~~~g~ha~llVi~~~r~-t--~~~~~~l~~l~~~FG~~---------------------------~~k~~ivvfT~~d 127 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLGRF-T--EEDREVLELLQEIFGEE---------------------------IWKHTIVVFTHAD 127 (212)
T ss_dssp HHTTT-ESEEEEEEETTB--S--HHHHHHHHHHHHHHCGG---------------------------GGGGEEEEEEEGG
T ss_pred HhccCCCeEEEEEEecCcc-h--HHHHHHHHHHHHHccHH---------------------------HHhHhhHHhhhcc
Confidence 0001258899999999843 3 23333334444333220 0123788889888
Q ss_pred CCCCCCcchhhhh----HHHHHHHHHHcCCeEEEEecc------CCCCHHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIA----VQCLRYLAHVNGASLLFHSSL------DPGLVKRTRDILNHYA 236 (890)
Q Consensus 187 l~~d~d~e~r~~i----~~~lr~la~~~Ga~l~etSAK------~~~nId~Lk~~I~~~l 236 (890)
...+.+ -...+ ...++.+....|..+...+.+ ....+.+|.+.|...+
T Consensus 128 ~~~~~~--~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 128 ELEDDS--LEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp GGTTTT--HHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc--HHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence 764322 11122 245777888888888877766 2234555666666555
No 374
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.22 E-value=5.5e-06 Score=82.93 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=79.2
Q ss_pred eEEEEeCCCcccc-cccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRL-EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~-~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.+||+.+|+..+. .+... .+ .+. -++++|+|++.|.++ +.+..|++.++.+...
T Consensus 53 ~~i~Dt~G~~~~~~~~~~~--~~--~~~--d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------ 107 (170)
T cd04115 53 VQLWDTAGQERFRKSMVQH--YY--RNV--HAVVFVYDVTNMASF-HSLPSWIEECEQHSLP------------------ 107 (170)
T ss_pred EEEEeCCChHHHHHhhHHH--hh--cCC--CEEEEEEECCCHHHH-HhHHHHHHHHHHhcCC------------------
Confidence 3799999985543 23332 11 121 268999999999998 8889999888764321
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-.+|+|||+||+|+...-. .-......+|..++...+-||+|
T Consensus 108 ---------------------------------~~~p~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~ 149 (170)
T cd04115 108 ---------------------------------NEVPRILVGNKCDLREQIQ-----VPTDLAQRFADAHSMPLFETSAK 149 (170)
T ss_pred ---------------------------------CCCCEEEEEECccchhhcC-----CCHHHHHHHHHHcCCcEEEEecc
Confidence 1389999999999863211 11223456677788889999999
Q ss_pred C---hhhHHHHHHHHhhhh
Q psy11649 552 D---PGLVKRTRDILNHYA 567 (890)
Q Consensus 552 ~---~~n~~~l~kyi~hr~ 567 (890)
. ..|++.++..+.+++
T Consensus 150 ~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 150 DPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCcCCCCHHHHHHHHHHHh
Confidence 8 889999998888764
No 375
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.21 E-value=5.9e-06 Score=82.56 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=75.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+++|+... .+ .. ..-.+++|+|++.+.++ +.++.|+..++.+-..
T Consensus 49 l~i~D~~g~~~~----~~---~~----~~~~~ilv~d~~~~~sf-~~~~~~~~~i~~~~~~------------------- 97 (158)
T cd04103 49 LLIRDEGGAPDA----QF---AS----WVDAVIFVFSLENEASF-QTVYNLYHQLSSYRNI------------------- 97 (158)
T ss_pred EEEEECCCCCch----hH---Hh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 689999999431 11 11 12278999999999999 7888898877653210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K 551 (890)
-.+|++|||+|+|+... . ....-....+.+|.+++ ...|-||+|
T Consensus 98 --------------------------------~~~piilvgnK~Dl~~~-~--~~~v~~~~~~~~~~~~~~~~~~e~SAk 142 (158)
T cd04103 98 --------------------------------SEIPLILVGTQDAISES-N--PRVIDDARARQLCADMKRCSYYETCAT 142 (158)
T ss_pred --------------------------------CCCCEEEEeeHHHhhhc-C--CcccCHHHHHHHHHHhCCCcEEEEecC
Confidence 13789999999998421 0 11112234566777775 788899999
Q ss_pred ChhhHHHHHHHHhhh
Q psy11649 552 DPGLVKRTRDILNHY 566 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr 566 (890)
.+.|++.+++.+..+
T Consensus 143 ~~~~i~~~f~~~~~~ 157 (158)
T cd04103 143 YGLNVERVFQEAAQK 157 (158)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999887643
No 376
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.21 E-value=8.3e-06 Score=84.18 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=80.5
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|...+..+... .+. ..-++|+|+|++.+.++ +.++.|+..+.++...
T Consensus 49 l~i~D~~G~~~~~~~~~~--~~~----~ad~vilv~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 102 (198)
T cd04147 49 LDILDTSGSYSFPAMRKL--SIQ----NSDAFALVYAVDDPESF-EEVERLREEILEVKED------------------- 102 (198)
T ss_pred EEEEECCCchhhhHHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 579999998766665444 222 12379999999999988 7888887766543221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||.|+......... +....++...+++..+.+|++.
T Consensus 103 --------------------------------~~~piilv~NK~Dl~~~~~~v~~---~~~~~~~~~~~~~~~~~~Sa~~ 147 (198)
T cd04147 103 --------------------------------KFVPIVVVGNKADSLEEERQVPA---KDALSTVELDWNCGFVETSAKD 147 (198)
T ss_pred --------------------------------CCCcEEEEEEccccccccccccH---HHHHHHHHhhcCCcEEEecCCC
Confidence 14899999999999753111111 1112223346778889999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.++..|...+-
T Consensus 148 g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 148 NENVLEVFKELLRQAN 163 (198)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999988764
No 377
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.20 E-value=1.4e-05 Score=83.56 Aligned_cols=58 Identities=12% Similarity=-0.002 Sum_probs=38.1
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+.|.++|+||+|+..... .......+.++++ ..+++++++||+++.|++++.+++...
T Consensus 148 ~~a~iiv~NK~Dl~~~~~-~~~~~~~~~l~~~--~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVG-FDVEKMKADAKKI--NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccch-hhHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 468899999999963111 1111112222221 124889999999999999999988764
No 378
>KOG0461|consensus
Probab=98.17 E-value=4e-05 Score=84.23 Aligned_cols=175 Identities=14% Similarity=0.193 Sum_probs=107.8
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcC------CC---CCCCCccceeEEEEEEe----cccc--ceEEEEEEcCCCcch
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEK------ND---TPKPTLALEYIYARKSG----KTVM--KDICHLWELGSGTSR 96 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~------~~---~~kptigvdY~f~~~~g----~~~~--k~~l~IwDlpG~~~~ 96 (890)
.+.++++-++|--.||||||..+|..- +. +...++++|.-|..... .... ..++.+.|+||..++
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 455789999999999999999999762 11 22345556655544441 2211 127889999998554
Q ss_pred hhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649 97 LEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP 175 (890)
Q Consensus 97 ~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~ 175 (890)
+... -.. - =.|..++|+|+..-..- ...+..+ +.+. +.
T Consensus 84 ---IRtiigga-q---iiDlm~lviDv~kG~Qt-QtAEcLi--ig~~-------------------------------~c 122 (522)
T KOG0461|consen 84 ---IRTIIGGA-Q---IIDLMILVIDVQKGKQT-QTAECLI--IGEL-------------------------------LC 122 (522)
T ss_pred ---HHHHHhhh-h---eeeeeeEEEehhccccc-ccchhhh--hhhh-------------------------------hc
Confidence 4333 100 1 16899999999985442 1222211 1111 12
Q ss_pred CcEEEEeecccCCCCCCcchhhh-hHHHHHHHHHHc-------CCeEEEEeccCC----CCHHHHHHHHHHHHhccCccc
Q psy11649 176 VPLILIGGKYDLFENLEPNKKRI-AVQCLRYLAHVN-------GASLLFHSSLDP----GLVKRTRDILNHYAFSSHLAS 243 (890)
Q Consensus 176 IPiIVVgNK~Dl~~d~d~e~r~~-i~~~lr~la~~~-------Ga~l~etSAK~~----~nId~Lk~~I~~~lf~~~~~~ 243 (890)
.-.+||.||+|+.. +.+|+. +.....++++.+ +++++++||+.| +.+.+|++.|...+|...
T Consensus 123 ~klvvvinkid~lp---E~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~--- 196 (522)
T KOG0461|consen 123 KKLVVVINKIDVLP---ENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK--- 196 (522)
T ss_pred cceEEEEecccccc---chhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC---
Confidence 34788999999863 223332 223333343332 278999999999 899999999999987533
Q ss_pred ccccCCCCccccc
Q psy11649 244 AVNFDYNKPIFVP 256 (890)
Q Consensus 244 ~~~~d~~kpl~Ip 256 (890)
-|...|+++.
T Consensus 197 ---Rd~~gpflm~ 206 (522)
T KOG0461|consen 197 ---RDEEGPFLMA 206 (522)
T ss_pred ---cCCCCCeEEE
Confidence 2555555443
No 379
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.16 E-value=5.9e-06 Score=84.23 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=74.5
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+++|...+..+... .+. ...++|+|+|.+.|.++ +.++.|+..+......
T Consensus 54 l~l~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~D~~~~~~~-~~~~~~~~~i~~~~~~------------------- 107 (183)
T cd04152 54 FHFWDVGGQEKLRPLWKS--YTR----CTDGIVFVVDSVDVERM-EEAKTELHKITRFSEN------------------- 107 (183)
T ss_pred EEEEECCCcHhHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHhhhhc-------------------
Confidence 589999998655544333 111 13378999999998776 6666676655442221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH--HHHHHcCCceeEecc
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR--YLAHVNGASLLFHSS 550 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR--~fcl~yGAsL~ftS~ 550 (890)
.++|++||+||+|+....+.+. +.+.+. .++-..+..++.+|+
T Consensus 108 --------------------------------~~~p~iiv~NK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 108 --------------------------------QGVPVLVLANKQDLPNALSVSE---VEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred --------------------------------CCCcEEEEEECcCccccCCHHH---HHHHhCccccCCCCceEEEEeec
Confidence 2479999999999975444333 222221 111122356789999
Q ss_pred CChhhHHHHHHHHhhhh
Q psy11649 551 LDPGLVKRTRDILNHYA 567 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~ 567 (890)
+.+.|++.+++.|...+
T Consensus 153 ~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 153 IIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999888877554
No 380
>KOG1707|consensus
Probab=98.16 E-value=1.4e-05 Score=93.11 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=92.8
Q ss_pred cCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649 30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFS 107 (890)
Q Consensus 30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~ 107 (890)
....+.+++.++|.+++|||.|++.|+|+. .++..+....|......... ....+-+-|++-. .. ....+..
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g-~~k~LiL~ei~~~-~~----~~l~~ke 493 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKG-QQKYLILREIGED-DQ----DFLTSKE 493 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecc-ccceEEEeecCcc-cc----ccccCcc
Confidence 346678999999999999999999999962 24445555444432332221 1113444444322 00 0011111
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
-. +|+++++||.++|.+| ..+...++. .. ....+|+++|++|+|+
T Consensus 494 ~~---cDv~~~~YDsS~p~sf-~~~a~v~~~-~~------------------------------~~~~~Pc~~va~K~dl 538 (625)
T KOG1707|consen 494 AA---CDVACLVYDSSNPRSF-EYLAEVYNK-YF------------------------------DLYKIPCLMVATKADL 538 (625)
T ss_pred ce---eeeEEEecccCCchHH-HHHHHHHHH-hh------------------------------hccCCceEEEeecccc
Confidence 23 9999999999999998 333332221 11 0136899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~ 235 (890)
- +..+.......++|.++|++ .+-+|.+.... ..++.-|...
T Consensus 539 D-----e~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~ 581 (625)
T KOG1707|consen 539 D-----EVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATM 581 (625)
T ss_pred c-----hhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHh
Confidence 3 22222222238999999975 55556664222 4454444333
No 381
>PLN03108 Rab family protein; Provisional
Probab=98.15 E-value=6.5e-06 Score=86.09 Aligned_cols=133 Identities=15% Similarity=0.173 Sum_probs=89.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+++|+..|...+..+-.. .+. ....+|+|+|++.|.++ +.+..|+..++.+..
T Consensus 57 l~l~Dt~G~~~~~~~~~~--~~~----~ad~~vlv~D~~~~~s~-~~l~~~~~~~~~~~~-------------------- 109 (210)
T PLN03108 57 LQIWDTAGQESFRSITRS--YYR----GAAGALLVYDITRRETF-NHLASWLEDARQHAN-------------------- 109 (210)
T ss_pred EEEEeCCCcHHHHHHHHH--Hhc----cCCEEEEEEECCcHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 589999998665544332 111 12378999999999988 788888766543210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-.+|+|+|++|+|+...- ..-.....++|..+|...|.+|+++
T Consensus 110 --------------------------------~~~piiiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~ 152 (210)
T PLN03108 110 --------------------------------ANMTIMLIGNKCDLAHRR-----AVSTEEGEQFAKEHGLIFMEASAKT 152 (210)
T ss_pred --------------------------------CCCcEEEEEECccCcccc-----CCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 037899999999986421 1112344566778899999999999
Q ss_pred hhhHHHHHHHHhhhhcCCCC-CcceecccCCceEecCc
Q psy11649 553 PGLVKRTRDILNHYAFSSHL-ASAVNFDYNKPIFVPFG 589 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~~-~~~~~v~~~d~ifIPaG 589 (890)
+.|++.++..+...++.-.. .......+...+-+|.|
T Consensus 153 ~~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (210)
T PLN03108 153 AQNVEEAFIKTAAKIYKKIQDGVFDVSNESYGIKVGYG 190 (210)
T ss_pred CCCHHHHHHHHHHHHHHHhhhccccccccccccccccC
Confidence 99999999999988875321 12223334445555555
No 382
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.14 E-value=5.7e-06 Score=82.95 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=76.3
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
--.++|+.+|...+..+... .+. ..-++++|+|.|.|.++ +.+..|+..+.....
T Consensus 43 ~~i~l~Dt~G~~~~~~~~~~--~~~----~ad~ii~V~D~s~~~s~-~~~~~~~~~~~~~~~------------------ 97 (169)
T cd04158 43 LKFTIWDVGGKHKLRPLWKH--YYL----NTQAVVFVVDSSHRDRV-SEAHSELAKLLTEKE------------------ 97 (169)
T ss_pred EEEEEEECCCChhcchHHHH--Hhc----cCCEEEEEEeCCcHHHH-HHHHHHHHHHhcChh------------------
Confidence 34699999998766654433 122 22378999999999887 556666654432110
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH--HHHHHcCCceeEe
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR--YLAHVNGASLLFH 548 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR--~fcl~yGAsL~ft 548 (890)
. -++|+||||||+|+....+.++ +++.++ .+|.......+.|
T Consensus 98 -----------~----------------------~~~piilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd04158 98 -----------L----------------------RDALLLIFANKQDVAGALSVEE---MTELLSLHKLCCGRSWYIQGC 141 (169)
T ss_pred -----------h----------------------CCCCEEEEEeCcCcccCCCHHH---HHHHhCCccccCCCcEEEEeC
Confidence 0 1368999999999974444333 333332 2221111245569
Q ss_pred ccCChhhHHHHHHHHhhhhcC
Q psy11649 549 SSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 549 S~K~~~n~~~l~kyi~hr~fg 569 (890)
|+|.+.|++.++..|.+.+.+
T Consensus 142 Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 142 DARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999887665
No 383
>KOG1532|consensus
Probab=98.14 E-value=2.4e-05 Score=83.95 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=69.7
Q ss_pred EEEEEEcCCCcch-------hhHHhhhhccccccccCcEEEEEEeCC---CcCchHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy11649 84 ICHLWELGSGTSR-------LEVASLFSSFSLTAQSGFTLVLMLDLS---RLNSLWTEAETFLAKFRAIFESNESVREKR 153 (890)
Q Consensus 84 ~l~IwDlpG~~~~-------~~Li~~~r~~~~~~~~ad~IIIV~DlS---np~S~~~~L~~wlq~I~e~~~~ll~~~~~~ 153 (890)
..-|+|||||... .-+...+ ....+.++++|+|.. +|.+|+.+...--..+.+
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~l-----ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk------------ 179 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETL-----ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK------------ 179 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhH-----hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh------------
Confidence 5778999998642 1112222 111278999999954 477887777665443333
Q ss_pred cccccccccccccccccccCCCCcEEEEeecccCCCC-C------Ccchhhh---------hHHHHHHHHHH-----cCC
Q psy11649 154 GSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-L------EPNKKRI---------AVQCLRYLAHV-----NGA 212 (890)
Q Consensus 154 ~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-~------d~e~r~~---------i~~~lr~la~~-----~Ga 212 (890)
..+|+|+|.||+|+.+. + |-|..+. .....+.++.. .+.
T Consensus 180 --------------------tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~l 239 (366)
T KOG1532|consen 180 --------------------TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSL 239 (366)
T ss_pred --------------------ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhC
Confidence 15899999999998632 0 0001100 00111112111 245
Q ss_pred eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 213 SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 213 ~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..+-+|+.+|.|.+.++..+...+
T Consensus 240 rtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 240 RTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred ceEEEecccCCcHHHHHHHHHHHH
Confidence 688999999999999988876654
No 384
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.12 E-value=2e-05 Score=82.46 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=80.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+.+|+..+..+... -... ..++|+|+|+|.+.++ +.|+.|+..++.+..+. .+
T Consensus 56 l~IwDtaG~e~~~~l~~~--~yr~----ad~iIlVyDvtn~~Sf-~~l~~W~~ei~~~~~~~--------------~~-- 112 (202)
T cd04102 56 VELWDVGGSESVKSTRAV--FYNQ----VNGIILVHDLTNRKSS-QNLQRWSLEALNKDTFP--------------TG-- 112 (202)
T ss_pred EEEEecCCchhHHHHHHH--HhCc----CCEEEEEEECcChHHH-HHHHHHHHHHHHhhccc--------------cc--
Confidence 489999999887776555 2232 3389999999999999 99999999887654320 00
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
..... . ++ +......-.+||||||||+|+..+= .-+....-.....+|.+.||.-+.-+.+.
T Consensus 113 ------~~~~~-------~---~~-~~~~~~~~~~PiilVGnK~Dl~~~r-~~~~~~~~~~~~~ia~~~~~~~i~~~c~~ 174 (202)
T cd04102 113 ------LLVTN-------G---DY-DSEQFGGNQIPLLVIGTKLDQIPEK-ESSGNLVLTARGFVAEQGNAEEINLNCTN 174 (202)
T ss_pred ------ccccc-------c---cc-cccccCCCCceEEEEEECccchhhc-ccchHHHhhHhhhHHHhcCCceEEEecCC
Confidence 00000 0 00 0001112358999999999997421 11112222335578999999988877664
Q ss_pred hh-------hHHHHHHHHh
Q psy11649 553 PG-------LVKRTRDILN 564 (890)
Q Consensus 553 ~~-------n~~~l~kyi~ 564 (890)
.. |--+|.+|+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~ 193 (202)
T cd04102 175 GRLLAAGSSDAVKLSRFFD 193 (202)
T ss_pred cccccCCCccHHHHHHHHH
Confidence 32 4555555543
No 385
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.11 E-value=1.7e-05 Score=85.50 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=80.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
++||+..|+..+..+-.. .+. ..-++|+|+|++.+.++ +.++.|++.+.+.-.. +..
T Consensus 50 l~I~Dt~G~~~~~~~~~~--~~~----~ad~iIlVfdv~~~~Sf-~~i~~~~~~I~~~k~~----~~~------------ 106 (247)
T cd04143 50 LDILDTSGNHPFPAMRRL--SIL----TGDVFILVFSLDNRESF-EEVCRLREQILETKSC----LKN------------ 106 (247)
T ss_pred EEEEECCCChhhhHHHHH--Hhc----cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhhcc----ccc------------
Confidence 489999998665554333 111 22378999999999987 8889998887654211 000
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
..-.+-.+|+|||+||+|+... .....+.+++.++ ...+...+.+|+|.
T Consensus 107 ---------------------------~~~~~~~~piIivgNK~Dl~~~-~~v~~~ei~~~~~---~~~~~~~~evSAkt 155 (247)
T cd04143 107 ---------------------------KTKENVKIPMVICGNKADRDFP-REVQRDEVEQLVG---GDENCAYFEVSAKK 155 (247)
T ss_pred ---------------------------ccccCCCCcEEEEEECccchhc-cccCHHHHHHHHH---hcCCCEEEEEeCCC
Confidence 0001124899999999999742 1122233443333 23467899999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++..|...+
T Consensus 156 g~gI~elf~~L~~~~ 170 (247)
T cd04143 156 NSNLDEMFRALFSLA 170 (247)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998643
No 386
>PLN03118 Rab family protein; Provisional
Probab=98.11 E-value=1.8e-05 Score=82.59 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=81.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+.+|+..+..+... .+.. .-++|+|+|++.+.++ +.+. .|...++.+..
T Consensus 64 l~l~Dt~G~~~~~~~~~~--~~~~----~d~~vlv~D~~~~~sf-~~~~~~~~~~~~~~~~------------------- 117 (211)
T PLN03118 64 LTIWDTAGQERFRTLTSS--YYRN----AQGIILVYDVTRRETF-TNLSDVWGKEVELYST------------------- 117 (211)
T ss_pred EEEEECCCchhhHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcC-------------------
Confidence 379999999776665444 2221 2379999999999987 4454 46655443111
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.-++|+||||||+|+...-+. -.+....++..+|...|.+|++
T Consensus 118 --------------------------------~~~~~~ilv~NK~Dl~~~~~i-----~~~~~~~~~~~~~~~~~e~SAk 160 (211)
T PLN03118 118 --------------------------------NQDCVKMLVGNKVDRESERDV-----SREEGMALAKEHGCLFLECSAK 160 (211)
T ss_pred --------------------------------CCCCCEEEEEECccccccCcc-----CHHHHHHHHHHcCCEEEEEeCC
Confidence 013688999999999743111 1223445677889999999999
Q ss_pred ChhhHHHHHHHHhhhhcCC
Q psy11649 552 DPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~ 570 (890)
...|++.++.+|..+++..
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 161 TRENVEQCFEELALKIMEV 179 (211)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999764
No 387
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.10 E-value=1.4e-05 Score=84.48 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=80.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|.. ..+... .+.. ..-++++|+|++.+.++ +.++.|+..++.+..
T Consensus 52 l~i~Dt~G~~--~~~~~~--~~~~---~ad~iilV~d~td~~S~-~~~~~~~~~l~~~~~-------------------- 103 (221)
T cd04148 52 LVVIDHWEQE--MWTEDS--CMQY---QGDAFVVVYSVTDRSSF-ERASELRIQLRRNRQ-------------------- 103 (221)
T ss_pred EEEEeCCCcc--hHHHhH--Hhhc---CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 4799999985 111111 1110 23478999999999987 788888876654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
..++|+|||+||+|+...- ..-.+..+.+|..+|+..+.||++.
T Consensus 104 -------------------------------~~~~piilV~NK~Dl~~~~-----~v~~~~~~~~a~~~~~~~~e~SA~~ 147 (221)
T cd04148 104 -------------------------------LEDRPIILVGNKSDLARSR-----EVSVQEGRACAVVFDCKFIETSAGL 147 (221)
T ss_pred -------------------------------CCCCCEEEEEEChhccccc-----eecHHHHHHHHHHcCCeEEEecCCC
Confidence 0148999999999986321 1112234567788899999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.+++.|...+..
T Consensus 148 ~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 148 QHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988763
No 388
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.10 E-value=4.3e-05 Score=85.35 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=73.5
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCch------HHHHHHHHHHHHHHHhhhhhhhhhcccc
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSL------WTEAETFLAKFRAIFESNESVREKRGSF 156 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~------~~~L~~wlq~I~e~~~~ll~~~~~~~~l 156 (890)
..+.+||++|+...+..+..+ + .++++||+|+|+++.... .+.+..-++.+...+..
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~----f--~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~----------- 223 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHC----F--EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS----------- 223 (317)
T ss_pred eEEEEECCCCCcccchhHHHH----h--CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC-----------
Confidence 378899999999888888877 2 269999999999985321 01222222222222211
Q ss_pred ccccccccccccccccCCCCcEEEEeecccCCCC-------------CCc------chhhhhHHHHHHHHHH--cCCeEE
Q psy11649 157 EHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-------------LEP------NKKRIAVQCLRYLAHV--NGASLL 215 (890)
Q Consensus 157 ~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-------------~d~------e~r~~i~~~lr~la~~--~Ga~l~ 215 (890)
..-.+.|++|++||.|++.. +.. +....+......+... ..+-..
T Consensus 224 --------------~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~ 289 (317)
T cd00066 224 --------------RWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPH 289 (317)
T ss_pred --------------ccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence 11136899999999997642 111 0111222222222211 123456
Q ss_pred EEeccCCCCHHHHHHHHHHHHh
Q psy11649 216 FHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 216 etSAK~~~nId~Lk~~I~~~lf 237 (890)
+|+|.+..+++.+++.+...+.
T Consensus 290 ~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 290 FTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred eccccchHHHHHHHHHHHHHHH
Confidence 7788888888888777777664
No 389
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.06 E-value=2.7e-05 Score=77.71 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=72.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
.++|+..|.......+.. .+. ..-++++|+|.+.|.++ +++ +.|+..++++-.
T Consensus 49 ~~i~Dt~G~~~~~~~~~~--~~~----~ad~~ilv~d~~~~~s~-~~~~~~~~~~i~~~~~------------------- 102 (166)
T cd01893 49 TTIVDTSSRPQDRANLAA--EIR----KANVICLVYSVDRPSTL-ERIRTKWLPLIRRLGV------------------- 102 (166)
T ss_pred EEEEeCCCchhhhHHHhh--hcc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 479999998654443333 232 12268999999999998 665 578877654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-HHHHHHHHHHHHHHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-KKRIAVQCLRYLAHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~~d~Iq~~lR~fcl~yGAsL~ftS~ 550 (890)
++|++|||||+|+....+.+ ..+.++..+.++.. -...+.||+
T Consensus 103 ----------------------------------~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa 146 (166)
T cd01893 103 ----------------------------------KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE--IETCVECSA 146 (166)
T ss_pred ----------------------------------CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc--ccEEEEecc
Confidence 37899999999997543321 11222222222211 036899999
Q ss_pred CChhhHHHHHHHHhhh
Q psy11649 551 LDPGLVKRTRDILNHY 566 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr 566 (890)
+++.|++.++..+.-.
T Consensus 147 ~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 147 KTLINVSEVFYYAQKA 162 (166)
T ss_pred ccccCHHHHHHHHHHH
Confidence 9999999998877643
No 390
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.05 E-value=3.5e-05 Score=95.17 Aligned_cols=87 Identities=10% Similarity=-0.009 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccceeEEEEEEec-cccceEEEEEEcCCCcc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALEYIYARKSGK-TVMKDICHLWELGSGTS 95 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~~~ 95 (890)
-.+|+++|..++|||||+.+|+...+.. .-+++++-........ ...+..++++||||...
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 5689999999999999999998632110 0011111000000000 11234799999999988
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCCcCc
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS 127 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S 127 (890)
|...+... ++ .+|++|+|+|......
T Consensus 100 f~~~~~~~----l~--~~D~avlVvda~~g~~ 125 (731)
T PRK07560 100 FGGDVTRA----MR--AVDGAIVVVDAVEGVM 125 (731)
T ss_pred hHHHHHHH----HH--hcCEEEEEEECCCCCC
Confidence 75444433 11 3899999999887544
No 391
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.04 E-value=1.1e-05 Score=81.06 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=73.9
Q ss_pred eEEEEeCCCccccccccccccccccccc-ceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQS-GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~-~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+.+|+.....+ ....+. .-++++|+|.+.|.++ +.+..|++.++ .
T Consensus 56 l~~~d~~g~~~~~~~-------~~~~~~~~d~~llv~d~~~~~s~-~~~~~~~~~~~----~------------------ 105 (169)
T cd01892 56 LILREVGEDEVAILL-------NDAELAACDVACLVYDSSDPKSF-SYCAEVYKKYF----M------------------ 105 (169)
T ss_pred EEEEecCCccccccc-------chhhhhcCCEEEEEEeCCCHHHH-HHHHHHHHHhc----c------------------
Confidence 478999998544322 222222 2288999999999776 66666664321 0
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~ 550 (890)
...+|++||+||+|+...-. ........||.++|+ ..+.+|+
T Consensus 106 --------------------------------~~~~p~iiv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T cd01892 106 --------------------------------LGEIPCLFVAAKADLDEQQQ-----RYEVQPDEFCRKLGLPPPLHFSS 148 (169)
T ss_pred --------------------------------CCCCeEEEEEEccccccccc-----ccccCHHHHHHHcCCCCCEEEEe
Confidence 00379999999999863211 011123466778887 4699999
Q ss_pred CChhhHHHHHHHHhhhhc
Q psy11649 551 LDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~f 568 (890)
+.+.|++.+++.|.-.++
T Consensus 149 ~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 149 KLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ccCccHHHHHHHHHHHhh
Confidence 999999999999987665
No 392
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.04 E-value=1.7e-05 Score=78.57 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=78.0
Q ss_pred EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccccc
Q psy11649 394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH 473 (890)
Q Consensus 394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~ 473 (890)
++|+.+|...+..+..- .+.. .-.+++|+|.+.+.++ +.+..|+..++....
T Consensus 59 ~~~D~~g~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~--------------------- 110 (169)
T cd04114 59 QIWDTAGQERFRSITQS--YYRS----ANALILTYDITCEESF-RCLPEWLREIEQYAN--------------------- 110 (169)
T ss_pred EEEECCCcHHHHHHHHH--HhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC---------------------
Confidence 79999998655544333 2222 2268999999999887 788888876644211
Q ss_pred ccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649 474 RDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP 553 (890)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~ 553 (890)
-++|+++|+||+|+... .+..+...+.|........+.+|++.+
T Consensus 111 -------------------------------~~~~~i~v~NK~D~~~~-----~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 154 (169)
T cd04114 111 -------------------------------NKVITILVGNKIDLAER-----REVSQQRAEEFSDAQDMYYLETSAKES 154 (169)
T ss_pred -------------------------------CCCeEEEEEECcccccc-----cccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 13789999999998631 112223446677778889999999999
Q ss_pred hhHHHHHHHHhhh
Q psy11649 554 GLVKRTRDILNHY 566 (890)
Q Consensus 554 ~n~~~l~kyi~hr 566 (890)
.|++.++.-|.-+
T Consensus 155 ~gv~~l~~~i~~~ 167 (169)
T cd04114 155 DNVEKLFLDLACR 167 (169)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999887754
No 393
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.02 E-value=3e-05 Score=76.76 Aligned_cols=114 Identities=21% Similarity=0.243 Sum_probs=80.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+.+|+.+|...+..+... .+. ..-++++|+|++.+.++-...+.|+..+..+.
T Consensus 50 l~~~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------- 102 (171)
T cd00157 50 LGLWDTAGQEEYDRLRPL--SYP----NTDVFLICFSVDSPSSFENVKTKWIPEIRHYC--------------------- 102 (171)
T ss_pred EEEEeCCCcccccccchh--hcC----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---------------------
Confidence 579999998655444333 111 23389999999999998677777766554411
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH------HHHHHHHHHHHHHHcCC-ce
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK------KRIAVQCLRYLAHVNGA-SL 545 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~------~d~Iq~~lR~fcl~yGA-sL 545 (890)
.++|++|||||+|+...-.... ...-....++++..+|. ..
T Consensus 103 --------------------------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 103 --------------------------------PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred --------------------------------CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 0489999999999884322110 01124557788889998 89
Q ss_pred eEeccCChhhHHHHHHHHhh
Q psy11649 546 LFHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 546 ~ftS~K~~~n~~~l~kyi~h 565 (890)
+.+|++++.+++.++.+|..
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999988753
No 394
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.02 E-value=4.9e-05 Score=84.07 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=98.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--------------CC---------------------CCCCccceeEEEEEEec
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--------------DT---------------------PKPTLALEYIYARKSGK 78 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--------------~~---------------------~kptigvdY~f~~~~g~ 78 (890)
...+++.+|.--=||||||-||+... .. ...++++|-.|.-..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs-- 82 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS-- 82 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc--
Confidence 35789999999999999999998631 00 022344443331111
Q ss_pred cccceEEEEEEcCCCcch-hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHH--Hhhhhhhhhhccc
Q psy11649 79 TVMKDICHLWELGSGTSR-LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAI--FESNESVREKRGS 155 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~--~~~ll~~~~~~~~ 155 (890)
..+.++-|-||||++.| +++..-.. .||++|+++|.-. .+ +++-++| +..
T Consensus 83 -T~KRkFIiADTPGHeQYTRNMaTGAS-------TadlAIlLVDAR~--Gv-------l~QTrRHs~I~s---------- 135 (431)
T COG2895 83 -TEKRKFIIADTPGHEQYTRNMATGAS-------TADLAILLVDARK--GV-------LEQTRRHSFIAS---------- 135 (431)
T ss_pred -cccceEEEecCCcHHHHhhhhhcccc-------cccEEEEEEecch--hh-------HHHhHHHHHHHH----------
Confidence 23448999999999766 33332222 2899999999833 21 1112222 222
Q ss_pred cccccccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHH
Q psy11649 156 FEHFRTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVK 226 (890)
Q Consensus 156 l~~~~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId 226 (890)
.+|| -++++.||+||. +++++....|..+...||.++|. .++++||..|.|+-
T Consensus 136 -----------------LLGIrhvvvAVNKmDLv-dy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 136 -----------------LLGIRHVVVAVNKMDLV-DYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred -----------------HhCCcEEEEEEeeeccc-ccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 1243 367889999996 67777888899999999999985 49999999999885
No 395
>KOG0410|consensus
Probab=98.02 E-value=2e-05 Score=86.17 Aligned_cols=162 Identities=18% Similarity=0.124 Sum_probs=95.7
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCc--cceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTL--ALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SS 105 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kpti--gvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~ 105 (890)
.....-|.+||..|+|||||+++|++..-.++..+ ++| .+...+....+..+-+.||-|..+- ..++..| +-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLD--pT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLD--PTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheecc--chhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 34456799999999999999999996321111111 122 1133344444557888999996432 3455555 32
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
+... .+|+++-|.|+|+|.-- ...+..+..+.+. ..++ .+.-.-++=|=||+
T Consensus 253 eeVa--eadlllHvvDiShP~ae-~q~e~Vl~vL~~i---------------------gv~~----~pkl~~mieVdnki 304 (410)
T KOG0410|consen 253 EEVA--EADLLLHVVDISHPNAE-EQRETVLHVLNQI---------------------GVPS----EPKLQNMIEVDNKI 304 (410)
T ss_pred HHHh--hcceEEEEeecCCccHH-HHHHHHHHHHHhc---------------------CCCc----HHHHhHHHhhcccc
Confidence 2222 59999999999999652 2222222211110 0000 00112245578888
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
|...++.+++ .++ .+.+||++|.|.+++.+.+......
T Consensus 305 D~e~~~~e~E-------------~n~--~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 305 DYEEDEVEEE-------------KNL--DVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccccccCccc-------------cCC--ccccccccCccHHHHHHHHHHHhhh
Confidence 8754433222 233 4678999999999999999887643
No 396
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.01 E-value=1.5e-05 Score=78.20 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=72.1
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+++|++.|...+..+... .+. ..-++|+|+|.+.+.++ +.++.|+..+..+..
T Consensus 46 ~~~l~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~D~~~~~~~-~~~~~~~~~~~~~~~------------------- 99 (162)
T cd04157 46 SFTAFDMSGQGKYRGLWEH--YYK----NIQGIIFVIDSSDRLRL-VVVKDELELLLNHPD------------------- 99 (162)
T ss_pred EEEEEECCCCHhhHHHHHH--HHc----cCCEEEEEEeCCcHHHH-HHHHHHHHHHHcCcc-------------------
Confidence 3689999999777666555 222 22378999999999876 555566544322100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHH--HHcCCceeEec
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA--HVNGASLLFHS 549 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc--l~yGAsL~ftS 549 (890)
..+.++|++||+||+|+......+. +.+.+. ++ .......|.||
T Consensus 100 ------------------------------~~~~~~p~iiv~NK~Dl~~~~~~~~---~~~~l~-~~~~~~~~~~~~~~S 145 (162)
T cd04157 100 ------------------------------IKHRRVPILFFANKMDLPDALTAVK---ITQLLG-LENIKDKPWHIFASN 145 (162)
T ss_pred ------------------------------cccCCCCEEEEEeCccccCCCCHHH---HHHHhC-CccccCceEEEEEee
Confidence 0013589999999999975433222 222111 11 11122367799
Q ss_pred cCChhhHHHHHHHHhh
Q psy11649 550 SLDPGLVKRTRDILNH 565 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~h 565 (890)
++.+.|++.++++|.+
T Consensus 146 a~~g~gv~~~~~~l~~ 161 (162)
T cd04157 146 ALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCCCchHHHHHHHhc
Confidence 9999999999999864
No 397
>KOG0079|consensus
Probab=97.99 E-value=6.6e-06 Score=80.65 Aligned_cols=127 Identities=17% Similarity=0.253 Sum_probs=95.1
Q ss_pred eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
+-||+-.|+.-++..+.- -. ..-.|++|-|.|+-.++ ....+|++.+|..-++
T Consensus 59 LqIwDtAGqErFrtitst-------yyrgthgv~vVYDVTn~ESF-~Nv~rWLeei~~ncds------------------ 112 (198)
T KOG0079|consen 59 LQIWDTAGQERFRTITST-------YYRGTHGVIVVYDVTNGESF-NNVKRWLEEIRNNCDS------------------ 112 (198)
T ss_pred EEEeecccHHHHHHHHHH-------HccCCceEEEEEECcchhhh-HhHHHHHHHHHhcCcc------------------
Confidence 479999999666654443 22 22368899999999998 8999999888763332
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
+|=|+||+|+|.- |.+-.+..-+|.||++||-.||=||+|
T Consensus 113 -----------------------------------v~~vLVGNK~d~~-----~RrvV~t~dAr~~A~~mgie~FETSaK 152 (198)
T KOG0079|consen 113 -----------------------------------VPKVLVGNKNDDP-----ERRVVDTEDARAFALQMGIELFETSAK 152 (198)
T ss_pred -----------------------------------ccceecccCCCCc-----cceeeehHHHHHHHHhcCchheehhhh
Confidence 4558999999964 455566778999999999999999999
Q ss_pred ChhhHHHHHHHHhhhhcCCCCCcceecccCCceE
Q psy11649 552 DPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIF 585 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~if 585 (890)
|+.|+.-.+..|...............-..+++-
T Consensus 153 e~~NvE~mF~cit~qvl~~k~r~~~~~~r~~~~~ 186 (198)
T KOG0079|consen 153 ENENVEAMFHCITKQVLQAKLRESVEQQRADAVS 186 (198)
T ss_pred hcccchHHHHHHHHHHHHHHHhhcHHHHhhcceE
Confidence 9999999888887665554444444444444443
No 398
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.99 E-value=2e-05 Score=77.75 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=69.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|...+..+-.. .+. ...++|+|+|.+.+.++-...+.|...++.. .
T Consensus 45 ~~i~Dt~G~~~~~~~~~~--~~~----~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-------------------- 97 (158)
T cd04151 45 FQVWDLGGQTSIRPYWRC--YYS----NTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-------------------- 97 (158)
T ss_pred EEEEECCCCHHHHHHHHH--Hhc----CCCEEEEEEECCCHHHHHHHHHHHHHHHhch-h--------------------
Confidence 589999998665554332 122 2337899999999876633323222221110 0
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHH-HHHHcCCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~-fcl~yGAsL~ftS~K 551 (890)
..++|++||+||+|+...... +.+++.++. .....+...|.+|++
T Consensus 98 -------------------------------~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~ 143 (158)
T cd04151 98 -------------------------------LKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTWSIFKTSAI 143 (158)
T ss_pred -------------------------------hcCCcEEEEEeCCCCCCCCCH---HHHHHHhCccccCCCcEEEEEeecc
Confidence 014799999999999743222 223333321 122345579999999
Q ss_pred ChhhHHHHHHHHh
Q psy11649 552 DPGLVKRTRDILN 564 (890)
Q Consensus 552 ~~~n~~~l~kyi~ 564 (890)
++.|++.++.+|.
T Consensus 144 ~~~gi~~l~~~l~ 156 (158)
T cd04151 144 KGEGLDEGMDWLV 156 (158)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999998875
No 399
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.98 E-value=5e-05 Score=95.06 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-------------C-----CCCccce-----eEEEEEE-------e-ccccce
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDT-------------P-----KPTLALE-----YIYARKS-------G-KTVMKD 83 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~-------------~-----kptigvd-----Y~f~~~~-------g-~~~~k~ 83 (890)
-.+|+|+|..++|||||+.+|+...+. + ..++++. +.|.... . ......
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 568999999999999999999863210 0 0111111 1110000 0 011133
Q ss_pred EEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649 84 ICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 162 (890)
Q Consensus 84 ~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~ 162 (890)
.++++||||+..|..-.... + .+|++|+|+|.+..-.. .....|.+ +
T Consensus 99 ~inliDtPGh~dF~~e~~~al~-------~~D~ailVvda~~Gv~~-~t~~~~~~-~----------------------- 146 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALR-------ITDGALVVVDCIEGVCV-QTETVLRQ-A----------------------- 146 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHh-------hcCEEEEEEECCCCCcc-cHHHHHHH-H-----------------------
Confidence 78999999998774444333 3 38999999999986443 12222322 1
Q ss_pred ccccccccccCCCCcEEEEeecccCC
Q psy11649 163 DEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 163 ~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
...++|++++.||+|+.
T Consensus 147 ---------~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 147 ---------LGERIRPVLTVNKMDRC 163 (843)
T ss_pred ---------HHCCCCEEEEEECCccc
Confidence 11268999999999985
No 400
>PRK00098 GTPase RsgA; Reviewed
Probab=97.97 E-value=3e-05 Score=85.86 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=62.6
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|.+++|+|+++|......+..|+..+.. .++|+++|+||+|+..
T Consensus 80 niD~vllV~d~~~p~~~~~~idr~L~~~~~--------------------------------~~ip~iIVlNK~DL~~-- 125 (298)
T PRK00098 80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--------------------------------NGIKPIIVLNKIDLLD-- 125 (298)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------------------------------CCCCEEEEEEhHHcCC--
Confidence 699999999999987764455777754332 2689999999999952
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
.... .....+....+|.+++++||+++.|+++|++.+.
T Consensus 126 ---~~~~-~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 126 ---DLEE-ARELLALYRAIGYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred ---CHHH-HHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhcc
Confidence 1221 2234445566788999999999999999988764
No 401
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.97 E-value=6.3e-05 Score=83.29 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=38.5
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHH----HHHHHHHH---cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQ----CLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~----~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+|.++|+||+|+.... ....... .+..+... ++.+++++||+++.|++++.+.|.+..
T Consensus 172 ~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 172 EIADIYVVNKADGEGAT---NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred hhccEEEEEcccccchh---HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 47889999999986311 1111111 11222121 234689999999999999999998764
No 402
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.95 E-value=2.6e-05 Score=78.31 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=71.9
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+++|+++|+..+..+... .+. ..-.+++|+|.+.+.++ +.+..|+..+..+..
T Consensus 59 ~l~l~D~~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 112 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRN--YFE----STDALIWVVDSSDRLRL-DDCKRELKELLQEER------------------- 112 (173)
T ss_pred EEEEEECCCCHHHHHHHHH--HhC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHhChh-------------------
Confidence 3589999999665544332 122 22378999999999876 555555543321000
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ftS~ 550 (890)
..++|++|||||+|+...... +.+++.+... +...+...|.||+
T Consensus 113 --------------------------------~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa 157 (173)
T cd04154 113 --------------------------------LAGATLLILANKQDLPGALSE---EEIREALELDKISSHHWRIQPCSA 157 (173)
T ss_pred --------------------------------hcCCCEEEEEECcccccCCCH---HHHHHHhCccccCCCceEEEeccC
Confidence 014799999999999753322 2233222110 1235668999999
Q ss_pred CChhhHHHHHHHHhh
Q psy11649 551 LDPGLVKRTRDILNH 565 (890)
Q Consensus 551 K~~~n~~~l~kyi~h 565 (890)
|.+.|++.++.+|..
T Consensus 158 ~~g~gi~~l~~~l~~ 172 (173)
T cd04154 158 VTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999988753
No 403
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.93 E-value=2.2e-05 Score=79.02 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=68.5
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-.++|+.+|+..+..+... .+.. .-++|+|+|.+.|.++ +.+..|+..+. ..
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~--~~~~----a~~ii~v~D~t~~~s~-~~~~~~~~~~~---~~------------------ 105 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRH--YYTG----TQGLIFVVDSADRDRI-DEARQELHRII---ND------------------ 105 (168)
T ss_pred EEEEEECCCCHHHHHHHHH--Hhcc----CCEEEEEEeCCchhhH-HHHHHHHHHHh---cC------------------
Confidence 3599999999766655443 2232 2389999999999776 44444333221 11
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHH--HHcCCceeEec
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA--HVNGASLLFHS 549 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc--l~yGAsL~ftS 549 (890)
... -++|+||||||+|+....+.++ +++.+. ++ ...+...+.||
T Consensus 106 --------~~~----------------------~~~piilv~NK~Dl~~~~~~~~---i~~~~~-~~~~~~~~~~~~~~S 151 (168)
T cd04149 106 --------REM----------------------RDALLLVFANKQDLPDAMKPHE---IQEKLG-LTRIRDRNWYVQPSC 151 (168)
T ss_pred --------Hhh----------------------cCCcEEEEEECcCCccCCCHHH---HHHHcC-CCccCCCcEEEEEee
Confidence 000 1479999999999874333332 222221 11 11223578899
Q ss_pred cCChhhHHHHHHHHh
Q psy11649 550 SLDPGLVKRTRDILN 564 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~ 564 (890)
+|.+.|++.++..|.
T Consensus 152 Ak~g~gv~~~~~~l~ 166 (168)
T cd04149 152 ATSGDGLYEGLTWLS 166 (168)
T ss_pred CCCCCChHHHHHHHh
Confidence 999999999988774
No 404
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.91 E-value=4e-05 Score=77.60 Aligned_cols=114 Identities=11% Similarity=0.136 Sum_probs=70.3
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+++|+.+|+..+..+.+.. +. + .-++|+|+|.|.|.++ +....|+..+...-.
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~--~~--~--ad~ii~v~D~t~~~s~-~~~~~~l~~~~~~~~------------------- 111 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHY--YT--N--TQGLIFVVDSNDRDRI-DEAREELHRMLNEDE------------------- 111 (175)
T ss_pred EEEEEECCCChhhHHHHHHH--hC--C--CCEEEEEEECCCHHHH-HHHHHHHHHHhhCHh-------------------
Confidence 35899999997777655441 22 1 2289999999999876 444444433221000
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ftS~ 550 (890)
. -++|++|||||+|+....+.++ |.+.+... +....+..+.||+
T Consensus 112 ----------~----------------------~~~piilv~NK~Dl~~~~~~~~---i~~~~~~~~~~~~~~~~~~~Sa 156 (175)
T smart00177 112 ----------L----------------------RDAVILVFANKQDLPDAMKAAE---ITEKLGLHSIRDRNWYIQPTCA 156 (175)
T ss_pred ----------h----------------------cCCcEEEEEeCcCcccCCCHHH---HHHHhCccccCCCcEEEEEeeC
Confidence 0 1379999999999864433222 22222111 1122334556999
Q ss_pred CChhhHHHHHHHHhhh
Q psy11649 551 LDPGLVKRTRDILNHY 566 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr 566 (890)
|.+.|++.+++.|.-.
T Consensus 157 ~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 157 TSGDGLYEGLTWLSNN 172 (175)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988643
No 405
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.90 E-value=3.5e-05 Score=77.73 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=72.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+++|+..+..+... .+. ..-++|+|+|.|.+.++ ...+.|+..+-.+..
T Consensus 60 ~~~l~D~~G~~~~~~~~~~--~~~----~~d~vi~V~D~s~~~~~-~~~~~~l~~~~~~~~------------------- 113 (174)
T cd04153 60 RFLMWDIGGQESLRSSWNT--YYT----NTDAVILVIDSTDRERL-PLTKEELYKMLAHED------------------- 113 (174)
T ss_pred EEEEEECCCCHHHHHHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHhchh-------------------
Confidence 3589999999766655443 222 12378999999999776 333333332211100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~ 550 (890)
...+|++|||||+|+....+.+ .|++.+. ..+...+..++.+|+
T Consensus 114 --------------------------------~~~~p~viv~NK~Dl~~~~~~~---~i~~~l~~~~~~~~~~~~~~~SA 158 (174)
T cd04153 114 --------------------------------LRKAVLLVLANKQDLKGAMTPA---EISESLGLTSIRDHTWHIQGCCA 158 (174)
T ss_pred --------------------------------hcCCCEEEEEECCCCCCCCCHH---HHHHHhCcccccCCceEEEeccc
Confidence 0137999999999997544333 2333332 112234557899999
Q ss_pred CChhhHHHHHHHHhhh
Q psy11649 551 LDPGLVKRTRDILNHY 566 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr 566 (890)
+++.|++.++++|..|
T Consensus 159 ~~g~gi~e~~~~l~~~ 174 (174)
T cd04153 159 LTGEGLPEGLDWIASR 174 (174)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 9999999999998643
No 406
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.90 E-value=3.1e-05 Score=76.57 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=73.3
Q ss_pred CceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649 390 ADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT 469 (890)
Q Consensus 390 kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~ 469 (890)
+--..+|+.+|+..+..+... .+. ..-.+++|+|.+.+.++ +.+..|+..+..+..
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~--~~~----~~~~~v~vvd~~~~~~~-~~~~~~~~~~~~~~~----------------- 104 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDK--YYA----ECHAIIYVIDSTDRERF-EESKSALEKVLRNEA----------------- 104 (167)
T ss_pred CEEEEEEECCCChhhHHHHHH--HhC----CCCEEEEEEECchHHHH-HHHHHHHHHHHhChh-----------------
Confidence 344589999998665544333 111 12279999999998765 555555544432111
Q ss_pred ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH---HHHcCCcee
Q psy11649 470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL---AHVNGASLL 546 (890)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f---cl~yGAsL~ 546 (890)
..++|++||+||+|+....+.+ .+...+..+ .-..+...+
T Consensus 105 ----------------------------------~~~~p~ilv~NK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 147 (167)
T cd04160 105 ----------------------------------LEGVPLLILANKQDLPDALSVE---EIKEVFQDKAEEIGRRDCLVL 147 (167)
T ss_pred ----------------------------------hcCCCEEEEEEccccccCCCHH---HHHHHhccccccccCCceEEE
Confidence 0148999999999986543322 233333222 123567899
Q ss_pred EeccCChhhHHHHHHHHhh
Q psy11649 547 FHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 547 ftS~K~~~n~~~l~kyi~h 565 (890)
.+|++.+.+++.+.++|.-
T Consensus 148 ~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 148 PVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EeeCCCCcCHHHHHHHHhc
Confidence 9999999999999988853
No 407
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.89 E-value=3.8e-05 Score=75.37 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=74.7
Q ss_pred CceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649 390 ADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT 469 (890)
Q Consensus 390 kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~ 469 (890)
+....+|+++|...+..+... .+.. ..++++|+|.+.|.++ ..+..|+..+..+..
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~--~~~~----~~~~i~v~D~~~~~~~-~~~~~~~~~~~~~~~----------------- 97 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKH--YYEN----TNGIIFVVDSSDRERI-EEAKEELHKLLNEEE----------------- 97 (158)
T ss_pred CEEEEEEECCCChhhHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhCcc-----------------
Confidence 345689999999776655443 2222 2478899999999877 444444443322110
Q ss_pred ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEe
Q psy11649 470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFH 548 (890)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ft 548 (890)
..++|++||+||+|+...-+ .+.+.+.++.. +.......+.+
T Consensus 98 ----------------------------------~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 140 (158)
T cd00878 98 ----------------------------------LKGVPLLIFANKQDLPGALS---VSELIEKLGLEKILGRRWHIQPC 140 (158)
T ss_pred ----------------------------------cCCCcEEEEeeccCCccccC---HHHHHHhhChhhccCCcEEEEEe
Confidence 12479999999999975332 22333333332 23334578999
Q ss_pred ccCChhhHHHHHHHHhh
Q psy11649 549 SSLDPGLVKRTRDILNH 565 (890)
Q Consensus 549 S~K~~~n~~~l~kyi~h 565 (890)
|++++.|++.+++.|..
T Consensus 141 Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 141 SAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred eCCCCCCHHHHHHHHhh
Confidence 99999999999988863
No 408
>PTZ00416 elongation factor 2; Provisional
Probab=97.88 E-value=5.6e-05 Score=94.53 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=68.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccce-----eEEEEEE--eccccceEEEEEE
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALE-----YIYARKS--GKTVMKDICHLWE 89 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvd-----Y~f~~~~--g~~~~k~~l~IwD 89 (890)
..+|+|+|..++|||||+.+|+...+.. ..+++++ +.+.... +....+..+++.|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 4589999999999999999998632110 0011111 0010000 0011123799999
Q ss_pred cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649 90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG 169 (890)
Q Consensus 90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~ 169 (890)
|||...|..-+... ++ .+|++|+|+|.+..-.. ....-|.+ +
T Consensus 99 tPG~~~f~~~~~~a----l~--~~D~ailVvda~~g~~~-~t~~~~~~-~------------------------------ 140 (836)
T PTZ00416 99 SPGHVDFSSEVTAA----LR--VTDGALVVVDCVEGVCV-QTETVLRQ-A------------------------------ 140 (836)
T ss_pred CCCHHhHHHHHHHH----Hh--cCCeEEEEEECCCCcCc-cHHHHHHH-H------------------------------
Confidence 99987764433333 11 49999999999885442 12222221 1
Q ss_pred cccCCCCcEEEEeecccCC
Q psy11649 170 LIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 170 li~~l~IPiIVVgNK~Dl~ 188 (890)
...++|++++.||+|+.
T Consensus 141 --~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 141 --LQERIRPVLFINKVDRA 157 (836)
T ss_pred --HHcCCCEEEEEEChhhh
Confidence 11258999999999985
No 409
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.88 E-value=3.4e-05 Score=77.22 Aligned_cols=109 Identities=20% Similarity=0.088 Sum_probs=70.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|+..+..+... .+.. .-++|+|+|.+.+.++ +.++.|+..+.. .
T Consensus 46 l~i~Dt~G~~~~~~~~~~--~~~~----ad~ii~V~D~t~~~s~-~~~~~~l~~~~~---~------------------- 96 (164)
T cd04162 46 MELLEIGGSQNLRKYWKR--YLSG----SQGLIFVVDSADSERL-PLARQELHQLLQ---H------------------- 96 (164)
T ss_pred EEEEECCCCcchhHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHh---C-------------------
Confidence 589999999665544333 1221 2268899999999876 555666443321 0
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHH--HHHHHHHcCCceeEecc
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQC--LRYLAHVNGASLLFHSS 550 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~--lR~fcl~yGAsL~ftS~ 550 (890)
.-++|++|||+|+|+......+ .|.+. +..+|...|..+|-||+
T Consensus 97 -------------------------------~~~~piilv~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~Sa 142 (164)
T cd04162 97 -------------------------------PPDLPLVVLANKQDLPAARSVQ---EIHKELELEPIARGRRWILQGTSL 142 (164)
T ss_pred -------------------------------CCCCcEEEEEeCcCCcCCCCHH---HHHHHhCChhhcCCCceEEEEeee
Confidence 0148999999999986543222 22222 45677778888888999
Q ss_pred CC------hhhHHHHHHHHh
Q psy11649 551 LD------PGLVKRTRDILN 564 (890)
Q Consensus 551 K~------~~n~~~l~kyi~ 564 (890)
|. ..+++.++..+.
T Consensus 143 ~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 143 DDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred cCCCChhHHHHHHHHHHHHh
Confidence 99 555555555443
No 410
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.85 E-value=0.00038 Score=79.51 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCC----------------CccceeEEEEEEeccccceEEEEEEcCCCcchhh
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKP----------------TLALEYIYARKSGKTVMKDICHLWELGSGTSRLE 98 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~kp----------------tigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~ 98 (890)
-.+|++|-----|||||+.+|+.+.+.... .-|+.. ..+.+.....+.+++|.||||+..|-.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITI-LaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITI-LAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEE-EeccceeecCCeEEEEecCCCcCCccc
Confidence 467999999999999999999985322111 111110 112222233345999999999988744
Q ss_pred HHhhh-hccccccccCcEEEEEEeCCC---cCc-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 99 VASLF-SSFSLTAQSGFTLVLMLDLSR---LNS-LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 99 Li~~~-r~~~~~~~~ad~IIIV~DlSn---p~S-~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
-+... .- .|++++++|... |.+ | -+. +.++
T Consensus 84 EVERvl~M-------VDgvlLlVDA~EGpMPQTrF--Vlk-------KAl~----------------------------- 118 (603)
T COG1217 84 EVERVLSM-------VDGVLLLVDASEGPMPQTRF--VLK-------KALA----------------------------- 118 (603)
T ss_pred hhhhhhhh-------cceEEEEEEcccCCCCchhh--hHH-------HHHH-----------------------------
Confidence 33333 21 689999999988 332 2 222 2221
Q ss_pred CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHH------HcCCeEEEEeccCCC----------CHHHHHHHHHHHH
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH------VNGASLLFHSSLDPG----------LVKRTRDILNHYA 236 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~------~~Ga~l~etSAK~~~----------nId~Lk~~I~~~l 236 (890)
.+.+-|||.||+|.... ....++.+...-|.. ++.++++|.|++.|. +++-|++.|...+
T Consensus 119 ~gL~PIVVvNKiDrp~A---rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 119 LGLKPIVVINKIDRPDA---RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred cCCCcEEEEeCCCCCCC---CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 26778999999998421 112333333333332 456789999998764 5666777776664
No 411
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.84 E-value=3.8e-05 Score=75.42 Aligned_cols=113 Identities=17% Similarity=0.095 Sum_probs=71.9
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
..+++|+++|...+..+... .+.. .-++|+|+|.++|.++ +.+..|+..+..+-.
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~--~~~~----~~~iv~v~D~~~~~~~-~~~~~~~~~~~~~~~------------------ 98 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKC--YLEN----TDGLVYVVDSSDEARL-DESQKELKHILKNEH------------------ 98 (160)
T ss_pred eEEEEEECCCCHhHHHHHHH--Hhcc----CCEEEEEEECCcHHHH-HHHHHHHHHHHhchh------------------
Confidence 35789999998655544332 1221 2378999999999866 444444433321000
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH--HHHHHHcCCceeEe
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL--RYLAHVNGASLLFH 548 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l--R~fcl~yGAsL~ft 548 (890)
..++|++||+||+|+...... +.+...+ ..+|...+...+-|
T Consensus 99 ---------------------------------~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~ 142 (160)
T cd04156 99 ---------------------------------IKGVPVVLLANKQDLPGALTA---EEITRRFKLKKYCSDRDWYVQPC 142 (160)
T ss_pred ---------------------------------hcCCCEEEEEECcccccCcCH---HHHHHHcCCcccCCCCcEEEEec
Confidence 014799999999998633222 2232222 34555455567889
Q ss_pred ccCChhhHHHHHHHHh
Q psy11649 549 SSLDPGLVKRTRDILN 564 (890)
Q Consensus 549 S~K~~~n~~~l~kyi~ 564 (890)
|+|.+.+++.+++.|.
T Consensus 143 Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 143 SAVTGEGLAEAFRKLA 158 (160)
T ss_pred ccccCCChHHHHHHHh
Confidence 9999999999998874
No 412
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.84 E-value=6.9e-05 Score=82.52 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=62.1
Q ss_pred cCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|.+++|+|++++. ++ ..+++|+..+.. .++|+++|+||+|+..+
T Consensus 78 nvD~vllV~d~~~p~~s~-~~ldr~L~~~~~--------------------------------~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 78 NVDQLVIVVSLNEPFFNP-RLLDRYLVAAEA--------------------------------AGIEPVIVLTKADLLDD 124 (287)
T ss_pred eCCEEEEEEEcCCCCCCH-HHHHHHHHHHHH--------------------------------cCCCEEEEEEHHHCCCh
Confidence 699999999999998 65 677778764432 25899999999999631
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.. ...........|.+++++||+++.|+++|++.|..
T Consensus 125 -----~~--~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 125 -----EE--EELELVEALALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -----HH--HHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence 11 11223334557889999999999999999887754
No 413
>KOG0094|consensus
Probab=97.83 E-value=0.00013 Score=74.99 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=100.1
Q ss_pred cccCCCCceeeccccccccccccCcccccCce-eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHH
Q psy11649 361 VNFDYNKPIFVPFGTDSVASIEGTTQYVTADI-CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTE 439 (890)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kdi-~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~s 439 (890)
+-..|+--|-+-|=..-| .++ +..| +-+|+-.|+..++-|+.. =+.. .+++|+|.||+.-.++ ++
T Consensus 47 fd~~YqATIGiDFlskt~-~l~------d~~vrLQlWDTAGQERFrslips--Y~Rd----s~vaviVyDit~~~Sf-e~ 112 (221)
T KOG0094|consen 47 FDNTYQATIGIDFLSKTM-YLE------DRTVRLQLWDTAGQERFRSLIPS--YIRD----SSVAVIVYDITDRNSF-EN 112 (221)
T ss_pred hcccccceeeeEEEEEEE-EEc------CcEEEEEEEecccHHHHhhhhhh--hccC----CeEEEEEEeccccchH-HH
Confidence 344566666665543333 222 2333 379999999888877665 2222 3478999999999999 99
Q ss_pred HHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccc
Q psy11649 440 AETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLF 519 (890)
Q Consensus 440 L~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~ 519 (890)
..+|+.-++.-... + ++=|++||+|.|+.
T Consensus 113 t~kWi~dv~~e~gs--------------------------------------------~-------~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 113 TSKWIEDVRRERGS--------------------------------------------D-------DVIIFLVGNKTDLS 141 (221)
T ss_pred HHHHHHHHHhccCC--------------------------------------------C-------ceEEEEEccccccc
Confidence 99999887762221 0 25579999999998
Q ss_pred cCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcCCCC
Q psy11649 520 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHL 572 (890)
Q Consensus 520 ~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~~ 572 (890)
. +.+ +-+.---+.|..+||--+=||+|.+-|+..|+.=|-..+||..-
T Consensus 142 d---krq--vs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 142 D---KRQ--VSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred c---hhh--hhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 3 111 11111126788999988889999999999999999999999654
No 414
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.78 E-value=8.7e-05 Score=73.47 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=42.1
Q ss_pred CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
+|+|||+||.|+... +..+. ++.++...+...+.||+|.+.|++.++++|..++
T Consensus 114 ~pvilv~NK~Dl~~~---~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 114 KPVIVVLNKIDLLTF---EDLSE----IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CCeEEEEEccccCch---hhHHH----HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 789999999999742 11111 3445555678899999999999999999998876
No 415
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.78 E-value=0.00012 Score=73.46 Aligned_cols=105 Identities=14% Similarity=0.037 Sum_probs=70.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|...+..+... .+.. .-++|+|+|.+++.+. .+++.|.... .
T Consensus 69 ~~l~Dt~G~~~~~~~~~~--~~~~----ad~~i~v~D~~~~~~~-~~~~~~~~~~----~-------------------- 117 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSR--SLAA----CEGALLLVDATQGVEA-QTLANFYLAL----E-------------------- 117 (179)
T ss_pred EEEEECCCChhhHHHHHH--HHHh----cCeEEEEEECCCCccH-hhHHHHHHHH----H--------------------
Confidence 489999998665554443 2221 2278999999998765 5555553210 0
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc---eeEec
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHS 549 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs---L~ftS 549 (890)
.++|+|||+||+|+...-..+ .+..++..+|.. .|.+|
T Consensus 118 --------------------------------~~~~iiiv~NK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 118 --------------------------------NNLEIIPVINKIDLPSADPER-------VKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred --------------------------------cCCCEEEEEECCCCCcCCHHH-------HHHHHHHHhCCCcccEEEee
Confidence 147899999999986321111 122344455653 89999
Q ss_pred cCChhhHHHHHHHHhhhh
Q psy11649 550 SLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~ 567 (890)
++.+.|++.|+++|...+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998654
No 416
>PRK12288 GTPase RsgA; Reviewed
Probab=97.75 E-value=0.00016 Score=81.69 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=63.8
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
.+.|.+++|++++...++ ..+..|+..+. ..++|++||+||+|+..+
T Consensus 119 ANvD~vlIV~s~~p~~s~-~~Ldr~L~~a~--------------------------------~~~i~~VIVlNK~DL~~~ 165 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSL-NIIDRYLVACE--------------------------------TLGIEPLIVLNKIDLLDD 165 (347)
T ss_pred EEccEEEEEEeCCCCCCH-HHHHHHHHHHH--------------------------------hcCCCEEEEEECccCCCc
Confidence 468999999999877777 77888875332 136899999999999631
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
+.+..... ........|..++++||+++.|+++|++.|..
T Consensus 166 ---~~~~~~~~-~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 166 ---EGRAFVNE-QLDIYRNIGYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred ---HHHHHHHH-HHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhh
Confidence 12222222 22334567889999999999999999988865
No 417
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.75 E-value=0.00026 Score=77.89 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC------------CCCCccceeEEEEEE-eccccceEEEEEEcCCCcc------
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDT------------PKPTLALEYIYARKS-GKTVMKDICHLWELGSGTS------ 95 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~------------~kptigvdY~f~~~~-g~~~~k~~l~IwDlpG~~~------ 95 (890)
.++|+|+|.+|+|||||+|.|++.... ...++.+.. .+.. ........+.|+||||.-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~ 81 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEE--RTVELEENGVKLNLTIIDTPGFGDNIDNSD 81 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEE--EEEEEEETCEEEEEEEEEEC-CSSSSTHCH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceee--EEEEeccCCcceEEEEEeCCCccccccchh
Confidence 689999999999999999999984210 112222221 1111 1222233899999999321
Q ss_pred ------------hhhHHhhh----h--ccccccccCcEEEEEEeCCCc--CchHHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649 96 ------------RLEVASLF----S--SFSLTAQSGFTLVLMLDLSRL--NSLWTEAETFLAKFRAIFESNESVREKRGS 155 (890)
Q Consensus 96 ------------~~~Li~~~----r--~~~~~~~~ad~IIIV~DlSnp--~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~ 155 (890)
|...+..- | ...-+ .+++++.++.+.. ..+ .+ +.+++...
T Consensus 82 ~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~R---VH~cLYfI~pt~~~L~~~--Di----~~mk~Ls~----------- 141 (281)
T PF00735_consen 82 CWEPIVDYIESQFDSYLEEESKINRPRIEDTR---VHACLYFIPPTGHGLKPL--DI----EFMKRLSK----------- 141 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSS-TTS-------EEEEEEEE-TTSSSS-HH--HH----HHHHHHTT-----------
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccCcCCCC---cceEEEEEcCCCccchHH--HH----HHHHHhcc-----------
Confidence 11111110 1 11123 6899999987652 222 22 22222111
Q ss_pred cccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649 156 FEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS 218 (890)
Q Consensus 156 l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS 218 (890)
.+++|-|..|+|.+. +++.....+.++.-...+++.++...
T Consensus 142 -------------------~vNvIPvIaKaD~lt---~~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 142 -------------------RVNVIPVIAKADTLT---PEELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp -------------------TSEEEEEESTGGGS----HHHHHHHHHHHHHHHHHTT--S----
T ss_pred -------------------cccEEeEEecccccC---HHHHHHHHHHHHHHHHHcCceeeccc
Confidence 378899999999863 45666666777777778888766533
No 418
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00024 Score=80.91 Aligned_cols=149 Identities=9% Similarity=0.025 Sum_probs=96.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhhhccccccc
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLFSSFSLTAQ 111 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~ 111 (890)
|...|.=--|||||+..+++.. +.-+-+++.|..|...... +..+.+.|.||.+++ ..++... .
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~---d~~~~fIDvpgh~~~i~~miag~-------~ 72 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE---DGVMGFIDVPGHPDFISNLLAGL-------G 72 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC---CCceEEeeCCCcHHHHHHHHhhh-------c
Confidence 5677888889999999999853 2334555555444333321 126899999999776 4444443 1
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE-EEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL-ILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi-IVVgNK~Dl~~d 190 (890)
+.|.+++|+|.++--.- ... +++.- ...++++- ++|.||+|..++
T Consensus 73 ~~d~alLvV~~deGl~~-qtg--------EhL~i-------------------------Ldllgi~~giivltk~D~~d~ 118 (447)
T COG3276 73 GIDYALLVVAADEGLMA-QTG--------EHLLI-------------------------LDLLGIKNGIIVLTKADRVDE 118 (447)
T ss_pred CCceEEEEEeCccCcch-hhH--------HHHHH-------------------------HHhcCCCceEEEEeccccccH
Confidence 47899999998652221 111 11111 22345665 999999999631
Q ss_pred CCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
. .+.+..+++-... .++++.+|+++|.||++|+++|..++
T Consensus 119 ----~--r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 119 ----A--RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ----H--HHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 1 2223333333332 46789999999999999999999987
No 419
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00033 Score=78.78 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC---CCC-----CCCccceeEEEEEE---e--cc-ccce---EEEEEEcCCCcc--
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTP-----KPTLALEYIYARKS---G--KT-VMKD---ICHLWELGSGTS-- 95 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~-----kptigvdY~f~~~~---g--~~-~~k~---~l~IwDlpG~~~-- 95 (890)
.+++-|||-||||||||+|.+|... .|| .|.+|+-|.-.-+- + .. ..+. .+++.|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3689999999999999999999842 233 44444433211000 1 11 1111 789999998643
Q ss_pred --hhhHHhhhhccccccccCcEEEEEEeCCC
Q psy11649 96 --RLEVASLFSSFSLTAQSGFTLVLMLDLSR 124 (890)
Q Consensus 96 --~~~Li~~~r~~~~~~~~ad~IIIV~DlSn 124 (890)
.+.|-..| -.+++ .+|+++-|+|.+.
T Consensus 82 s~GeGLGNkF-L~~IR--evdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKF-LDNIR--EVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHH-HHhhh--hcCeEEEEEEecC
Confidence 24444444 01122 4999999999884
No 420
>PRK12289 GTPase RsgA; Reviewed
Probab=97.74 E-value=0.00013 Score=82.58 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=59.0
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|.+++|+|++++..-...+.+|+..+. ..++|++||+||+|+..
T Consensus 89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~--------------------------------~~~ip~ILVlNK~DLv~-- 134 (352)
T PRK12289 89 NADQILLVFALAEPPLDPWQLSRFLVKAE--------------------------------STGLEIVLCLNKADLVS-- 134 (352)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHH--------------------------------HCCCCEEEEEEchhcCC--
Confidence 69999999999987632135667765331 12689999999999962
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
..+ .. ........+|..++++||+++.|+++|++.|.
T Consensus 135 ---~~~-~~-~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~ 171 (352)
T PRK12289 135 ---PTE-QQ-QWQDRLQQWGYQPLFISVETGIGLEALLEQLR 171 (352)
T ss_pred ---hHH-HH-HHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhc
Confidence 111 11 22223346788999999999999999977764
No 421
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.74 E-value=0.00022 Score=66.83 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=74.1
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+++|.......... .+. ..-++++|+|++.|... +.+..|.......
T Consensus 46 ~~~l~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~--------------------- 97 (157)
T cd00882 46 KLQIWDTAGQERFRSLRRL--YYR----GADGIILVYDVTDRESF-ENVKEWLLLILIN--------------------- 97 (157)
T ss_pred EEEEEecCChHHHHhHHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHh---------------------
Confidence 3579999997554443222 111 12378999999999887 6666664110000
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
....++|++||+||+|.....+.+... ..+.++...+..++.+|++
T Consensus 98 ------------------------------~~~~~~~~ivv~nk~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~ 143 (157)
T cd00882 98 ------------------------------KEGENIPIILVGNKIDLPEERVVSEEE----LAEQLAKELGVPYFETSAK 143 (157)
T ss_pred ------------------------------hccCCCcEEEEEeccccccccchHHHH----HHHHHHhhcCCcEEEEecC
Confidence 011258999999999998543332222 4556667788999999999
Q ss_pred ChhhHHHHHHHHh
Q psy11649 552 DPGLVKRTRDILN 564 (890)
Q Consensus 552 ~~~n~~~l~kyi~ 564 (890)
.+.+++.+..+|.
T Consensus 144 ~~~~i~~~~~~l~ 156 (157)
T cd00882 144 TGENVEELFEELA 156 (157)
T ss_pred CCCChHHHHHHHh
Confidence 9999999998875
No 422
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.73 E-value=0.00012 Score=72.48 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=41.2
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.|+++|+||+|+.. ... . .....+....+.+++++||+++.|+++|++.|...+
T Consensus 41 ~~p~iiv~NK~Dl~~-----~~~-~-~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 41 GKKLLIVLNKADLVP-----KEV-L-EKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred CCcEEEEEEhHHhCC-----HHH-H-HHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 589999999999852 111 1 112234445677899999999999999999998876
No 423
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.71 E-value=0.00015 Score=74.42 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=39.0
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHH-----HHcCC---eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-----HVNGA---SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-----~~~Ga---~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.|+++|+||+|+... +. ....+..++ ...+. .++++||+++.|++++++.|...+
T Consensus 61 ~~~~ilV~NK~Dl~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 61 NNPVILVGNKIDLLPK---DK---NLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcEEEEEEchhcCCC---CC---CHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999998631 11 111122222 23333 589999999999999999998875
No 424
>KOG0093|consensus
Probab=97.69 E-value=5.8e-05 Score=74.15 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=84.5
Q ss_pred eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
+.||+-.|+..++. ++..-. +.+.+|+|.|.++-.++ +++|.|.-++... .
T Consensus 72 lQiwDTagqEryrt-------iTTayyRgamgfiLmyDitNeeSf-~svqdw~tqIkty--s------------------ 123 (193)
T KOG0093|consen 72 LQIWDTAGQERYRT-------ITTAYYRGAMGFILMYDITNEESF-NSVQDWITQIKTY--S------------------ 123 (193)
T ss_pred EEEEecccchhhhH-------HHHHHhhccceEEEEEecCCHHHH-HHHHHHHHHheee--e------------------
Confidence 37999999955443 333333 46789999999999998 9999999876542 0
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
| ..+|||+||||||+-.+ +-.-..--|.|+.+.|--.|=||+|
T Consensus 124 -------w-------------------------~naqvilvgnKCDmd~e-----Rvis~e~g~~l~~~LGfefFEtSaK 166 (193)
T KOG0093|consen 124 -------W-------------------------DNAQVILVGNKCDMDSE-----RVISHERGRQLADQLGFEFFETSAK 166 (193)
T ss_pred -------c-------------------------cCceEEEEecccCCccc-----eeeeHHHHHHHHHHhChHHhhhccc
Confidence 1 13789999999998532 1111234678888999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
++.|+.-++.-++-.+..
T Consensus 167 ~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 167 ENINVKQVFERLVDIICD 184 (193)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999888877764
No 425
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.69 E-value=0.00013 Score=72.53 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=66.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+.+|...+..+... .+. ..-++|+|+|.+.+.++ +.+.+|+..+- .. .
T Consensus 46 ~~l~D~~G~~~~~~~~~~--~~~----~ad~~i~v~D~~~~~s~-~~~~~~~~~~~---~~----~-------------- 97 (159)
T cd04150 46 FTVWDVGGQDKIRPLWRH--YFQ----NTQGLIFVVDSNDRERI-GEAREELQRML---NE----D-------------- 97 (159)
T ss_pred EEEEECCCCHhHHHHHHH--Hhc----CCCEEEEEEeCCCHHHH-HHHHHHHHHHH---hc----H--------------
Confidence 599999998655544333 112 12378999999998876 55555443221 10 0
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH----HcCCceeEe
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH----VNGASLLFH 548 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl----~yGAsL~ft 548 (890)
. .-.+|++|||||+|+....+.++ + ..++++ ..++..+-+
T Consensus 98 --------~----------------------~~~~piilv~NK~Dl~~~~~~~~---i---~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04150 98 --------E----------------------LRDAVLLVFANKQDLPNAMSAAE---V---TDKLGLHSLRNRNWYIQAT 141 (159)
T ss_pred --------H----------------------hcCCCEEEEEECCCCCCCCCHHH---H---HHHhCccccCCCCEEEEEe
Confidence 0 00368999999999965433222 1 112221 123334458
Q ss_pred ccCChhhHHHHHHHHh
Q psy11649 549 SSLDPGLVKRTRDILN 564 (890)
Q Consensus 549 S~K~~~n~~~l~kyi~ 564 (890)
|+|.+.|++.+++.|.
T Consensus 142 Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 142 CATSGDGLYEGLDWLS 157 (159)
T ss_pred eCCCCCCHHHHHHHHh
Confidence 9999999999988774
No 426
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.66 E-value=0.0002 Score=78.81 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=39.7
Q ss_pred CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+..+-++|.||+|+.... ........+.+...+ ++.++.+||++++|++++.++|...
T Consensus 229 f~~ADIVVLNKiDLl~~~----~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYL----NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCccc----HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999996311 111222233333322 6889999999999999999998764
No 427
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.64 E-value=0.00077 Score=80.72 Aligned_cols=123 Identities=10% Similarity=-0.024 Sum_probs=69.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-C---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-------hhHHhh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-D---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-------LEVASL 102 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-------~~Li~~ 102 (890)
...+|+|+|.+||||||++|.|++.. . ...+.++ ... ...+.. .+..+.|+||||.... ..+...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~--ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQ--EIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEE--EEEEEE-CCceEEEEECCCCCccccchHHHHHHHHH
Confidence 45789999999999999999999953 1 2222222 110 111111 2347999999997542 111111
Q ss_pred hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 103 ~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
.. ..+...++|+||+|..++......+ -..+++.+.+.+..- .---+|||.
T Consensus 193 Ik-~~Lsk~gpDVVLlV~RLd~~~~D~e-D~~aLr~Iq~lFG~~---------------------------Iwk~tIVVF 243 (763)
T TIGR00993 193 VK-KFIKKNPPDIVLYVDRLDMQTRDSN-DLPLLRTITDVLGPS---------------------------IWFNAIVTL 243 (763)
T ss_pred HH-HHHhcCCCCEEEEEEeCCCccccHH-HHHHHHHHHHHhCHH---------------------------hHcCEEEEE
Confidence 10 0011124889999998875433212 124455454443320 112489999
Q ss_pred ecccCCC
Q psy11649 183 GKYDLFE 189 (890)
Q Consensus 183 NK~Dl~~ 189 (890)
|..|...
T Consensus 244 ThgD~lp 250 (763)
T TIGR00993 244 THAASAP 250 (763)
T ss_pred eCCccCC
Confidence 9999863
No 428
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.64 E-value=0.00025 Score=72.49 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=68.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..++|+++|+..+..+... -+.. .-.+|+|+|.|.+.++ +.++.|+.. ....
T Consensus 62 ~~~i~D~~Gq~~~~~~~~~--~~~~----a~~iI~V~D~s~~~s~-~~~~~~l~~---~l~~------------------ 113 (181)
T PLN00223 62 SFTVWDVGGQDKIRPLWRH--YFQN----TQGLIFVVDSNDRDRV-VEARDELHR---MLNE------------------ 113 (181)
T ss_pred EEEEEECCCCHHHHHHHHH--Hhcc----CCEEEEEEeCCcHHHH-HHHHHHHHH---HhcC------------------
Confidence 4699999999766665443 1221 2378999999998776 333333322 1110
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~ 550 (890)
... -.+|++|||+|.|+....+.++ +...+.--++.-.. .++-||+
T Consensus 114 --------~~~----------------------~~~piilv~NK~Dl~~~~~~~~---~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 114 --------DEL----------------------RDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred --------Hhh----------------------CCCCEEEEEECCCCCCCCCHHH---HHHHhCccccCCCceEEEeccC
Confidence 000 1379999999999976554222 11111100000000 2334899
Q ss_pred CChhhHHHHHHHHhhhh
Q psy11649 551 LDPGLVKRTRDILNHYA 567 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~ 567 (890)
+.+.+++.++++|.+.+
T Consensus 161 ~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998764
No 429
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.64 E-value=0.00024 Score=70.31 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=73.7
Q ss_pred eeEEEEeCCCcccc----ccccccccccccccc-ceEEEEEEeCCCc-hhHHHHHHHHHHHHHHHHHhhhhHHhhccccc
Q psy11649 392 ICHLWELGSGTSRL----EVASLFSSFSLTAQS-GFTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFE 465 (890)
Q Consensus 392 i~~vW~L~G~~~~~----~Ll~~~~al~~~~~~-~~~viivlDlS~P-w~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~ 465 (890)
-+.+|+..|..... ++...+ + ..+. .-++++|+|.+.+ ..+ +++..|.+.++++...
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~--~--~~~~~~d~vi~v~D~~~~~~~~-~~~~~~~~~l~~~~~~------------ 111 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRF--L--RHIERTRLLLHVIDLSGDDDPV-EDYKTIRNELELYNPE------------ 111 (170)
T ss_pred eEEEEecCcccCcccccCCchHHH--H--HHHHhCCEEEEEEecCCCCCHH-HHHHHHHHHHHHhCcc------------
Confidence 46899999953211 111110 0 1111 2289999999999 454 8888888877663210
Q ss_pred ccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHH-cCCc
Q psy11649 466 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-NGAS 544 (890)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~-yGAs 544 (890)
..++|++||+||+|+...-+ ....++.. +.. .+..
T Consensus 112 --------------------------------------~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~----~~~~~~~~ 147 (170)
T cd01898 112 --------------------------------------LLEKPRIVVLNKIDLLDEEE--LFELLKEL----LKELWGKP 147 (170)
T ss_pred --------------------------------------ccccccEEEEEchhcCCchh--hHHHHHHH----HhhCCCCC
Confidence 01478899999999864322 12223332 233 4678
Q ss_pred eeEeccCChhhHHHHHHHHhhh
Q psy11649 545 LLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 545 L~ftS~K~~~n~~~l~kyi~hr 566 (890)
.+.+|+|.+.+++.+++.|...
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 8999999999999999998754
No 430
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.63 E-value=0.00026 Score=71.18 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=78.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|++.|...+..+... .+. ....+++++|.+...++ +.+..|+..+-+...
T Consensus 51 ~~l~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~-------------------- 103 (180)
T cd04137 51 LEIVDTAGQDEYSILPQK--YSI----GIHGYILVYSVTSRKSF-EVVKVIYDKILDMLG-------------------- 103 (180)
T ss_pred EEEEECCChHhhHHHHHH--HHh----hCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 479999998554433332 111 22368999999998877 777777554322110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
..++|+|||+||+|+... + ..-...++.++..++...+.+|++.
T Consensus 104 -------------------------------~~~~p~ilv~NK~Dl~~~---~--~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (180)
T cd04137 104 -------------------------------KESVPIVLVGNKSDLHTQ---R--QVSTEEGKELAESWGAAFLESSARE 147 (180)
T ss_pred -------------------------------CCCCCEEEEEEchhhhhc---C--ccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 124789999999998631 1 1112235666778889999999999
Q ss_pred hhhHHHHHHHHhhhhcCCC
Q psy11649 553 PGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~ 571 (890)
+.+++.++..|.-.+...+
T Consensus 148 ~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 148 NENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999987766543
No 431
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.62 E-value=0.00027 Score=70.36 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=57.9
Q ss_pred cCcEEEEEEeCCCcCch-HHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSL-WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~-~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++++|+|+++|..- ...+..++. . ...+.|+++|.||+|+..
T Consensus 8 ~aD~il~VvD~~~p~~~~~~~i~~~l~---~------------------------------~~~~~p~ilVlNKiDl~~- 53 (157)
T cd01858 8 SSDVVIQVLDARDPMGTRCKHVEEYLK---K------------------------------EKPHKHLIFVLNKCDLVP- 53 (157)
T ss_pred hCCEEEEEEECCCCccccCHHHHHHHH---h------------------------------ccCCCCEEEEEEchhcCC-
Confidence 59999999999997431 122333222 1 012489999999999962
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+......+..+...+....+.+||+.+.|++.+.+.|...+
T Consensus 54 -----~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 54 -----TWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred -----HHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHH
Confidence 11233445555544444468899999999999999997764
No 432
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.61 E-value=0.00025 Score=70.56 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=41.0
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|+++|.||+|+.. . ....+.+..+....+..++.+||+++.|++++++.|....
T Consensus 29 ~~p~IiVlNK~Dl~~-----~-~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 29 GKKLILVLNKADLVP-----K-EVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred CCCEEEEEechhcCC-----H-HHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHh
Confidence 689999999999952 1 1122233344444567789999999999999999887653
No 433
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.61 E-value=0.00018 Score=77.54 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=63.1
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccccccc
Q psy11649 423 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLI 502 (890)
Q Consensus 423 ~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 502 (890)
.+++|+|++.|..-++.+++|+..++.
T Consensus 39 ~viiV~d~~~p~~s~~~l~r~l~~~~~----------------------------------------------------- 65 (245)
T TIGR00157 39 QIVIVSSAVLPELSLNQLDRFLVVAEA----------------------------------------------------- 65 (245)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHH-----------------------------------------------------
Confidence 789999999998444889999854431
Q ss_pred ccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649 503 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 503 ~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr 566 (890)
.++|+|||+||+|+..+ + ....+.++.|+ ++|...|++|+|.+.|++.|++++..+
T Consensus 66 --~~i~~vIV~NK~DL~~~---~--~~~~~~~~~~~-~~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 66 --QNIEPIIVLNKIDLLDD---E--DMEKEQLDIYR-NIGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred --CCCCEEEEEECcccCCC---H--HHHHHHHHHHH-HCCCeEEEEecCCchhHHHHHhhhcCC
Confidence 14788999999999631 1 12224555665 589999999999999999999988653
No 434
>KOG2486|consensus
Probab=97.61 E-value=0.00015 Score=78.17 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=89.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCC----c------ch
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG----T------SR 96 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~----~------~~ 96 (890)
+.+...++++|.+|||||||+|-++... +..+++-+ +............+.|+||. + .+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T------q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT------QAINHFHVGKSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc------eeeeeeeccceEEEEecCCcccccCCccCcchH
Confidence 4556789999999999999999998732 22222222 11111112236899999992 1 22
Q ss_pred hhHHhhh--hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 97 LEVASLF--SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 97 ~~Li~~~--r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
..+...| ..+++ -.+.+.+|.+.+-.--+ ..-.|+. .
T Consensus 207 ~~~t~~Y~leR~nL-----v~~FLLvd~sv~i~~~D~~~i~~~g-----------------------------------e 246 (320)
T KOG2486|consen 207 DKFTKSYLLERENL-----VRVFLLVDASVPIQPTDNPEIAWLG-----------------------------------E 246 (320)
T ss_pred hHhHHHHHHhhhhh-----heeeeeeeccCCCCCCChHHHHHHh-----------------------------------h
Confidence 3444555 12222 25666777766322101 1122332 2
Q ss_pred CCCcEEEEeecccCCCCCC-----c-chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 174 FPVPLILIGGKYDLFENLE-----P-NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d-----~-e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.++|+.+|.||||...+.. + ...+.-.+.+-+.+.....+.+++|+.++.|+++|+=.|.+
T Consensus 247 ~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 247 NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 3799999999999864321 0 01111122233333333456788999999999998555444
No 435
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.60 E-value=0.00016 Score=69.69 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=69.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|++.|...+..+... .+.. . -.+++|+|++.+.++ .....|+..+....
T Consensus 46 ~~~~D~~g~~~~~~~~~~--~~~~--~--d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~--------------------- 97 (159)
T cd04159 46 LKVWDLGGQPRFRSMWER--YCRG--V--NAIVYVVDAADRTAL-EAAKNELHDLLEKP--------------------- 97 (159)
T ss_pred EEEEECCCCHhHHHHHHH--HHhc--C--CEEEEEEECCCHHHH-HHHHHHHHHHHcCh---------------------
Confidence 589999999777665544 2221 1 268899999998876 44444433322100
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~K 551 (890)
...++|++||+||+|+...... +.+...+. ......+...+.+|++
T Consensus 98 ------------------------------~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~ 144 (159)
T cd04159 98 ------------------------------SLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYSISCK 144 (159)
T ss_pred ------------------------------hhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEEEEec
Confidence 0124799999999998743221 11111111 1112344678999999
Q ss_pred ChhhHHHHHHHHh
Q psy11649 552 DPGLVKRTRDILN 564 (890)
Q Consensus 552 ~~~n~~~l~kyi~ 564 (890)
.+.+++.++.+|.
T Consensus 145 ~~~gi~~l~~~l~ 157 (159)
T cd04159 145 EKTNIDIVLDWLI 157 (159)
T ss_pred cCCChHHHHHHHh
Confidence 9999999998875
No 436
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.60 E-value=0.00025 Score=70.65 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~ 58 (890)
|+|+|..++|||||+|.|+|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~ 21 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGR 21 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS
T ss_pred CEEEcCCCCCHHHHHHHHHhc
Confidence 789999999999999999985
No 437
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.60 E-value=0.00076 Score=72.56 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
-.+++|+|+.|+||||+++.+++.
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCC
Confidence 347999999999999999999984
No 438
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.59 E-value=0.00027 Score=80.30 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=67.6
Q ss_pred CcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649 93 GTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR 172 (890)
Q Consensus 93 ~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~ 172 (890)
.+.|..++..+ ++ +++++++|+|+++...- |...+.+...
T Consensus 50 ~e~f~~~l~~~----~~--~~~~Il~VvD~~d~~~s------~~~~l~~~~~---------------------------- 89 (360)
T TIGR03597 50 DDDFLNLLNSL----GD--SNALIVYVVDIFDFEGS------LIPELKRFVG---------------------------- 89 (360)
T ss_pred HHHHHHHHhhc----cc--CCcEEEEEEECcCCCCC------ccHHHHHHhC----------------------------
Confidence 34666666666 22 48899999999886542 3333333221
Q ss_pred CCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHH
Q psy11649 173 TFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 173 ~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+.|+++|+||+|+... ..........++++++.+|+ .++++||+++.|++++++.|...
T Consensus 90 --~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 90 --GNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred --CCCEEEEEEchhhCCC--CCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 4699999999999631 11122334455566777886 48999999999999999988665
No 439
>KOG1144|consensus
Probab=97.58 E-value=0.00035 Score=83.11 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=100.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC---CC---CCCCCccceeEEEEEE----------eccccce-EEEEEEcCCCcc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK---ND---TPKPTLALEYIYARKS----------GKTVMKD-ICHLWELGSGTS 95 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~---~~---~~kptigvdY~f~~~~----------g~~~~k~-~l~IwDlpG~~~ 95 (890)
.+..=|+|+|---+|||-|+..+.+. .+ .....+|..|.-.... +....+. -+.++||||+++
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 34455899999999999999999772 12 2223344443221100 1111122 689999999999
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCC---cCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR 172 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSn---p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~ 172 (890)
|..+..... .-||.+|+|+|+-. |.++ +++..+ +
T Consensus 553 FtnlRsrgs------slC~~aIlvvdImhGlepqti-ESi~lL------------------------------------R 589 (1064)
T KOG1144|consen 553 FTNLRSRGS------SLCDLAILVVDIMHGLEPQTI-ESINLL------------------------------------R 589 (1064)
T ss_pred hhhhhhccc------cccceEEEEeehhccCCcchh-HHHHHH------------------------------------H
Confidence 988887661 13999999999987 4443 222221 1
Q ss_pred CCCCcEEEEeecccCCCCCCcc------------hhhh-------hHHHHHHHHHH-------c-----C--CeEEEEec
Q psy11649 173 TFPVPLILIGGKYDLFENLEPN------------KKRI-------AVQCLRYLAHV-------N-----G--ASLLFHSS 219 (890)
Q Consensus 173 ~l~IPiIVVgNK~Dl~~d~d~e------------~r~~-------i~~~lr~la~~-------~-----G--a~l~etSA 219 (890)
.-..|+||+.||+|.+-+.... .+.+ ....+.+|+.+ | | +++++|||
T Consensus 590 ~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA 669 (1064)
T KOG1144|consen 590 MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSA 669 (1064)
T ss_pred hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccc
Confidence 2257999999999986331110 1111 11122233332 1 1 46899999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q psy11649 220 LDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 220 K~~~nId~Lk~~I~~~lf 237 (890)
.+|.||-.|.-+|.++..
T Consensus 670 ~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 670 ISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred ccCCCcHHHHHHHHHHHH
Confidence 999999999888877653
No 440
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.58 E-value=0.00061 Score=66.70 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=40.7
Q ss_pred cEEEEEeccccccCCChhHHHHHHHHHHHHHHH---cCCceeEeccCChhhHHHHHHHHhh
Q psy11649 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~---yGAsL~ftS~K~~~n~~~l~kyi~h 565 (890)
|+|+|+||+|+.. .+....+.+.+..++.. .+..++.+|++++.|++.++.+|.+
T Consensus 106 ~~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 106 RGLVVLTKADLVD---EDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cEEEEEECccccC---HHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 8899999999973 22223333344444444 5789999999999999999999865
No 441
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.57 E-value=0.00027 Score=70.03 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
..+++++|.+|+|||||+|+|.++. ..+.++.|..+. ...... ...+.+|||||.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~--~~~~~~--~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKG--EQLVKI--TSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeee--eEEEEc--CCCEEEEECcCC
Confidence 5689999999999999999999753 233445553221 111111 125899999993
No 442
>PLN00023 GTP-binding protein; Provisional
Probab=97.57 E-value=0.00019 Score=80.07 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=68.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+||+.+|+..+..+... -+.. ...+|+|+|+|.+.++ +.|++|++.++.+... ..+..
T Consensus 85 LqIWDTAGqErfrsL~~~--yyr~----AdgiILVyDITdr~SF-enL~kWl~eI~~~~~~--------------s~p~~ 143 (334)
T PLN00023 85 VELWDVSGHERYKDCRSL--FYSQ----INGVIFVHDLSQRRTK-TSLQKWASEVAATGTF--------------SAPLG 143 (334)
T ss_pred EEEEECCCChhhhhhhHH--hccC----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhccc--------------ccccc
Confidence 599999999877776665 2232 3379999999999988 9999999988765321 00000
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHH----HHHHHHHHHHHHHcCCc
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKK----RIAVQCLRYLAHVNGAS 544 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~----d~Iq~~lR~fcl~yGAs 544 (890)
... + ....+|+||||+|+|+.. ++.. .......+.||.++|..
T Consensus 144 -------s~~--------~-----------~~~~ipIILVGNK~DL~~---~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 144 -------SGG--------P-----------GGLPVPYIVIGNKADIAP---KEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred -------ccc--------c-----------cCCCCcEEEEEECccccc---cccccccccccHHHHHHHHHHcCCC
Confidence 000 0 001489999999999953 1111 12467889999998844
No 443
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.55 E-value=0.00035 Score=73.01 Aligned_cols=110 Identities=12% Similarity=0.149 Sum_probs=77.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... -.. ....+|+|+|++++.++ ..+..|+..+++..+
T Consensus 60 i~~~Dt~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 112 (215)
T PTZ00132 60 FNVWDTAGQEKFGGLRDG--YYI----KGQCAIIMFDVTSRITY-KNVPNWHRDIVRVCE-------------------- 112 (215)
T ss_pred EEEEECCCchhhhhhhHH--Hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 489999998655444322 011 23478999999999998 888888877664211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.+|+++|++|+|+-..-.. .+. -.++...|...+.+|+++
T Consensus 113 ---------------------------------~~~i~lv~nK~Dl~~~~~~--~~~-----~~~~~~~~~~~~e~Sa~~ 152 (215)
T PTZ00132 113 ---------------------------------NIPIVLVGNKVDVKDRQVK--ARQ-----ITFHRKKNLQYYDISAKS 152 (215)
T ss_pred ---------------------------------CCCEEEEEECccCccccCC--HHH-----HHHHHHcCCEEEEEeCCC
Confidence 2688999999998532111 111 136677888899999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++..+..|.-.+..
T Consensus 153 ~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 153 NYNFEKPFLWLARRLTN 169 (215)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999988888766654
No 444
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.55 E-value=0.00022 Score=72.92 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=37.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
..++|+|+|.||||||||+|+|++... ...|+++...... .. ...+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~----~~--~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEV----HL--DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEE----Ee--CCCEEEEECcCC
Confidence 357999999999999999999998532 3335555432211 11 125899999993
No 445
>KOG0091|consensus
Probab=97.54 E-value=0.00028 Score=70.53 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=101.5
Q ss_pred eEEEEeCCCcccccccccccccccccccce-EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGF-TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~-~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
+.+|+-.|+..++. ++..-.+++ -+++|.|.|+--++ +.++.|+..+.-++..
T Consensus 60 lqlwdtagqerfrs-------itksyyrnsvgvllvyditnr~sf-ehv~~w~~ea~m~~q~------------------ 113 (213)
T KOG0091|consen 60 LQLWDTAGQERFRS-------ITKSYYRNSVGVLLVYDITNRESF-EHVENWVKEAAMATQG------------------ 113 (213)
T ss_pred EEEeeccchHHHHH-------HHHHHhhcccceEEEEeccchhhH-HHHHHHHHHHHHhcCC------------------
Confidence 47899999965553 343334433 48999999999998 9999998877765552
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
|.-+=+.+||+|+|+.+ |+..-.+-.-+||.++|-..+=||+|
T Consensus 114 --------------------------------P~k~VFlLVGhKsDL~S-----qRqVt~EEaEklAa~hgM~FVETSak 156 (213)
T KOG0091|consen 114 --------------------------------PDKVVFLLVGHKSDLQS-----QRQVTAEEAEKLAASHGMAFVETSAK 156 (213)
T ss_pred --------------------------------CCeeEEEEeccccchhh-----hccccHHHHHHHHHhcCceEEEeccc
Confidence 01133579999999983 34444556778999999999999999
Q ss_pred ChhhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCccccccC
Q psy11649 552 DPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEG 598 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~~ 598 (890)
.+.|++..+.+|..-+|..=+ ..-+-+--||+..+.+-+
T Consensus 157 ~g~NVeEAF~mlaqeIf~~i~--------qGeik~edgw~gvKSsrp 195 (213)
T KOG0091|consen 157 NGCNVEEAFDMLAQEIFQAIQ--------QGEIKLEDGWGGVKSSRP 195 (213)
T ss_pred CCCcHHHHHHHHHHHHHHHHh--------cCceeeeeccccccccCC
Confidence 999999999999999996322 223445679999998655
No 446
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.52 E-value=0.00058 Score=69.74 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=67.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-.++|+.+|...+..+... .+.. .-.+|+|+|.|.+.++ +.+++|+..+ +.. .
T Consensus 62 ~~~l~D~~G~~~~~~~~~~--~~~~----ad~iI~v~D~t~~~s~-~~~~~~l~~~---~~~----~------------- 114 (182)
T PTZ00133 62 KFTMWDVGGQDKLRPLWRH--YYQN----TNGLIFVVDSNDRERI-GDAREELERM---LSE----D------------- 114 (182)
T ss_pred EEEEEECCCCHhHHHHHHH--HhcC----CCEEEEEEeCCCHHHH-HHHHHHHHHH---HhC----H-------------
Confidence 3699999999766655443 1222 2268999999998776 3333333221 110 0
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc--CCcee--E
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN--GASLL--F 547 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y--GAsL~--f 547 (890)
.. -.+|+||||||.|+......+ .|.. .+++.+ ....+ =
T Consensus 115 ---------~~----------------------~~~piilv~NK~Dl~~~~~~~---~i~~---~l~~~~~~~~~~~~~~ 157 (182)
T PTZ00133 115 ---------EL----------------------RDAVLLVFANKQDLPNAMSTT---EVTE---KLGLHSVRQRNWYIQG 157 (182)
T ss_pred ---------hh----------------------cCCCEEEEEeCCCCCCCCCHH---HHHH---HhCCCcccCCcEEEEe
Confidence 00 026899999999986433322 1211 111110 01123 3
Q ss_pred eccCChhhHHHHHHHHhhhhc
Q psy11649 548 HSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 548 tS~K~~~n~~~l~kyi~hr~f 568 (890)
||++++.|++.+++.|...+.
T Consensus 158 ~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 158 CCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 799999999999999987653
No 447
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.50 E-value=0.00018 Score=70.51 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
.+++++|.+|||||||+|+|++... ...++.+..... ..... .+.||||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT----IFLTP--TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE----EEeCC--CEEEEECCCc
Confidence 3899999999999999999998532 112333332211 11111 5899999995
No 448
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.49 E-value=0.00025 Score=71.11 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=73.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+++|+++|+..+..+... .+. ..-++|+|+|.|.+.++ +.+..|+..+..+..
T Consensus 44 ~~~i~D~~G~~~~~~~~~~--~~~----~a~~ii~V~D~s~~~s~-~~~~~~l~~l~~~~~------------------- 97 (167)
T cd04161 44 EVCIFDLGGGANFRGIWVN--YYA----EAHGLVFVVDSSDDDRV-QEVKEILRELLQHPR------------------- 97 (167)
T ss_pred EEEEEECCCcHHHHHHHHH--HHc----CCCEEEEEEECCchhHH-HHHHHHHHHHHcCcc-------------------
Confidence 4589999998666554332 122 22378999999999876 666777665543100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC--ceeEec
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA--SLLFHS 549 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA--sL~ftS 549 (890)
..++|++||++|+|+....+.+..... .-+-.+|-..+. .++.||
T Consensus 98 --------------------------------~~~~piliv~NK~Dl~~~~~~~~i~~~-~~l~~~~~~~~~~~~~~~~S 144 (167)
T cd04161 98 --------------------------------VSGKPILVLANKQDKKNALLGADVIEY-LSLEKLVNENKSLCHIEPCS 144 (167)
T ss_pred --------------------------------ccCCcEEEEEeCCCCcCCCCHHHHHHh-cCcccccCCCCceEEEEEeE
Confidence 014899999999999754432221111 012334544443 456699
Q ss_pred cCCh------hhHHHHHHHHh
Q psy11649 550 SLDP------GLVKRTRDILN 564 (890)
Q Consensus 550 ~K~~------~n~~~l~kyi~ 564 (890)
++++ .+++...++|.
T Consensus 145 a~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 145 AIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred ceeCCCCccccCHHHHHHHHh
Confidence 9997 89999998885
No 449
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.48 E-value=0.00042 Score=69.01 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
..+|+++|.||||||||+|+|.+... ...|+.+....+. ... ..+.+.||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~----~~~--~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI----TLM--KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE----EcC--CCEEEEECcCC
Confidence 56899999999999999999998532 2223333222111 111 24789999993
No 450
>KOG0393|consensus
Probab=97.47 E-value=0.00059 Score=71.02 Aligned_cols=115 Identities=22% Similarity=0.252 Sum_probs=85.3
Q ss_pred Cce-eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccc
Q psy11649 390 ADI-CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 468 (890)
Q Consensus 390 kdi-~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~ 468 (890)
+-| +++|+=.|+..+..|-.+ ..+... .+++++++++|.++.+-.++|+-.++.|-.
T Consensus 51 ~~v~L~LwDTAGqedYDrlRpl--sY~~td----vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---------------- 108 (198)
T KOG0393|consen 51 KPVELGLWDTAGQEDYDRLRPL--SYPQTD----VFLLCFSVVSPESFENVKSKWIPEIKHHCP---------------- 108 (198)
T ss_pred CEEEEeeeecCCCccccccccc--CCCCCC----EEEEEEEcCChhhHHHHHhhhhHHHHhhCC----------------
Confidence 444 589999999888775433 333332 457789999999999999999876666432
Q ss_pred cccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHH---------HHHHHHHHHHH
Q psy11649 469 TADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKR---------IAVQCLRYLAH 539 (890)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d---------~Iq~~lR~fcl 539 (890)
++|+|+||||.|+-.+. ...+ ....+.+..|.
T Consensus 109 -------------------------------------~vpiiLVGtk~DLr~d~--~~~~~l~~~~~~~Vt~~~g~~lA~ 149 (198)
T KOG0393|consen 109 -------------------------------------NVPIILVGTKADLRDDP--STLEKLQRQGLEPVTYEQGLELAK 149 (198)
T ss_pred -------------------------------------CCCEEEEeehHHhhhCH--HHHHHHHhccCCcccHHHHHHHHH
Confidence 48999999999999432 2222 33678999999
Q ss_pred HcCC-ceeEeccCChhhHHHHHHHHhh
Q psy11649 540 VNGA-SLLFHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 540 ~yGA-sL~ftS~K~~~n~~~l~kyi~h 565 (890)
+.|| ..+=||+++.+|++..+.=-..
T Consensus 150 ~iga~~y~EcSa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 150 EIGAVKYLECSALTQKGVKEVFDEAIR 176 (198)
T ss_pred HhCcceeeeehhhhhCCcHHHHHHHHH
Confidence 9995 5788999999998876654433
No 451
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.46 E-value=0.00024 Score=78.30 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=38.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT 94 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~ 94 (890)
..++++|+|.||||||||+|+|++... ...|+++....+.. . ...+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~----~--~~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK----L--GKGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE----e--CCcEEEEECCCcC
Confidence 467999999999999999999998532 22355444322111 1 1258999999973
No 452
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.44 E-value=0.00025 Score=72.10 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=40.2
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHH------------HcCCceeEeccCChhhHHHHHHHHhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH------------VNGASLLFHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl------------~yGAsL~ftS~K~~~n~~~l~kyi~h 565 (890)
++|++||+||+|+...... +.+++.++..-. ...+.+|-||++...+++.++++|..
T Consensus 120 ~~pvivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 120 NVPFLILGNKIDLPGAVSE---EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred CCCEEEEEeCCCCCCCcCH---HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 3799999999999753333 334444442211 13356899999999999999999864
No 453
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.43 E-value=0.00042 Score=70.15 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=36.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
...++++++|.+|||||||+|+|++... ...++.+.... ..... ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~--~~~~~----~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQ--WIKIS----PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeE--EEEec----CCEEEEECCCC
Confidence 3457999999999999999999998532 22233332211 11111 25899999994
No 454
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.41 E-value=0.00028 Score=77.30 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=37.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
...+++|+|.||||||||+|+|++.. ....|+++....+ ... ...+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~----~~~--~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW----IKL--SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE----EEe--CCCEEEEECCCc
Confidence 46899999999999999999999853 1223444433211 111 125899999997
No 455
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.38 E-value=0.00032 Score=72.03 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-----------CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN-----------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~-----------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
.+++++|.+|||||||+|.|.+.. ....|+++.+. ....... .+.|+||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~----~~~~~~~--~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL----IKIPLGN--GKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee----EEEecCC--CCEEEeCcCC
Confidence 579999999999999999999732 12233433331 1111111 4799999993
No 456
>KOG0098|consensus
Probab=97.37 E-value=0.00046 Score=70.59 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=98.9
Q ss_pred CCCCceeeccccccccccccCcccccCcee-EEEEeCCCcccccccccccccccccccce-EEEEEEeCCCchhHHHHHH
Q psy11649 364 DYNKPIFVPFGTDSVASIEGTTQYVTADIC-HLWELGSGTSRLEVASLFSSFSLTAQSGF-TLVLMLDLSRLNSLWTEAE 441 (890)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~kdi~-~vW~L~G~~~~~~Ll~~~~al~~~~~~~~-~viivlDlS~Pw~l~~sL~ 441 (890)
+|.--|-|-||-+-++ +-.|.|- +||+-+|+.++..+ +..=.+++ =++||.|+++..++ +.|.
T Consensus 34 ~hd~TiGvefg~r~~~-------id~k~IKlqiwDtaGqe~frsv-------~~syYr~a~GalLVydit~r~sF-~hL~ 98 (216)
T KOG0098|consen 34 VHDLTIGVEFGARMVT-------IDGKQIKLQIWDTAGQESFRSV-------TRSYYRGAAGALLVYDITRRESF-NHLT 98 (216)
T ss_pred cccceeeeeeceeEEE-------EcCceEEEEEEecCCcHHHHHH-------HHHHhccCcceEEEEEccchhhH-HHHH
Confidence 4445677777766543 2345564 99999999777653 33344433 38999999999999 9999
Q ss_pred HHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEecccccc-
Q psy11649 442 TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFE- 520 (890)
Q Consensus 442 ~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~- 520 (890)
.|+.-+|.|... .+-|+++|+|+|+-.
T Consensus 99 ~wL~D~rq~~~~----------------------------------------------------NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 99 SWLEDARQHSNE----------------------------------------------------NMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHHHHHhcCC----------------------------------------------------CcEEEEEcchhhhhcc
Confidence 999999987632 144799999999963
Q ss_pred -CCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 521 -NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 521 -~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
+..+| -=+-||.++|---|=||+|.+.|+...+.=+-+-+|.
T Consensus 127 R~Vs~E-------EGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 127 REVSKE-------EGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred ccccHH-------HHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 33333 3467899999888889999999999988877777775
No 457
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.34 E-value=0.00052 Score=64.24 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=34.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHH
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRA 449 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~ 449 (890)
+++|+.+|+..+...... . .-...++|||+|+|+|.++ +.+..|++.++.
T Consensus 52 ~~~~d~~g~~~~~~~~~~--~----~~~~d~~ilv~D~s~~~s~-~~~~~~~~~l~~ 101 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQF--F----LKKADAVILVYDLSDPESL-EYLSQLLKWLKN 101 (119)
T ss_dssp EEEEEESSSHCHHCTSHH--H----HHHSCEEEEEEECCGHHHH-HHHHHHHHHHHH
T ss_pred EEEEecCccceecccccc--h----hhcCcEEEEEEcCCChHHH-HHHHHHHHHHHH
Confidence 889999999655544333 1 1223489999999999988 666555555554
No 458
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.33 E-value=0.0011 Score=69.20 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=45.5
Q ss_pred cEEEEEeccccccCCChhHHHHHHHHHHHHHHHc---CCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y---GAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
|+|||+||.|+. +++......+.++.++..+ ++..|++|++.+.|++.|+.+|..++.-
T Consensus 139 ~iiivvNK~Dl~---~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 139 HIIIVQNKIDLV---KEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred cEEEEEEchhcc---CHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 689999999996 3333333345566666655 6789999999999999999999987654
No 459
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.28 E-value=0.0013 Score=74.27 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=67.6
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccccccc
Q psy11649 423 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLI 502 (890)
Q Consensus 423 ~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 502 (890)
++++|+|+|.+.+ ++.++.|...++.+... +
T Consensus 239 vlI~ViD~s~~~s-~e~~~~~~~EL~~~~~~----------------------------L-------------------- 269 (335)
T PRK12299 239 LLLHLVDIEAVDP-VEDYKTIRNELEKYSPE----------------------------L-------------------- 269 (335)
T ss_pred EEEEEEcCCCCCC-HHHHHHHHHHHHHhhhh----------------------------c--------------------
Confidence 8999999998775 48889998887765332 0
Q ss_pred ccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 503 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 503 ~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
...|+|||+||+|+... +. .....++.++...+...|++|++...|++.++++|...+..
T Consensus 270 --~~kp~IIV~NKiDL~~~---~~--~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 270 --ADKPRILVLNKIDLLDE---EE--EREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred --ccCCeEEEEECcccCCc---hh--HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 13689999999998632 11 11223444566678899999999999999999999877643
No 460
>KOG0081|consensus
Probab=97.27 E-value=0.00083 Score=66.93 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=86.3
Q ss_pred eeEEEEeCCCcccccccccccccccccccce-EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGF-TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~-~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
-+.+|+-.|+..++.| +..=++|. -+++++|||.--+++ .+..|+++++.|.=-
T Consensus 68 hLQlWDTAGQERFRSL-------TTAFfRDAMGFlLiFDlT~eqSFL-nvrnWlSQL~~hAYc----------------- 122 (219)
T KOG0081|consen 68 HLQLWDTAGQERFRSL-------TTAFFRDAMGFLLIFDLTSEQSFL-NVRNWLSQLQTHAYC----------------- 122 (219)
T ss_pred EEeeeccccHHHHHHH-------HHHHHHhhccceEEEeccchHHHH-HHHHHHHHHHHhhcc-----------------
Confidence 3578999999766643 33334433 489999999999995 468999999998653
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS 550 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~ 550 (890)
+ . -.||+.|+|+|+- +++..-..+.+.+|-+||-+-|=||+
T Consensus 123 ---------E---------------~----------PDivlcGNK~DL~-----~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 123 ---------E---------------N----------PDIVLCGNKADLE-----DQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred ---------C---------------C----------CCEEEEcCccchh-----hhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 0 0 1478999999986 23344466788999999999999999
Q ss_pred CChhhHHHHHHHHhhhhc
Q psy11649 551 LDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~f 568 (890)
-.+.|+.+.-..++-++.
T Consensus 164 ~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVM 181 (219)
T ss_pred ccCcCHHHHHHHHHHHHH
Confidence 999999887777766554
No 461
>KOG0458|consensus
Probab=97.26 E-value=0.0015 Score=76.71 Aligned_cols=159 Identities=17% Similarity=0.113 Sum_probs=96.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcC--C-------------------------------CCCCCCccceeEEEEEEec
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--N-------------------------------DTPKPTLALEYIYARKSGK 78 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~-------------------------------~~~kptigvdY~f~~~~g~ 78 (890)
.-....++++|.-.+|||||+-+|+.. . +....+++++-. +. --
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~--~~-~f 250 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVK--TT-WF 250 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEee--eE-EE
Confidence 335689999999999999999888651 0 001122222211 11 11
Q ss_pred cccceEEEEEEcCCCcch-hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649 79 TVMKDICHLWELGSGTSR-LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE 157 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~ 157 (890)
......+.|.|.||+..| ..++.-.. .+|+.|+|+|++-- .|...++ -....+++..-
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~s-------qaD~avLvvd~s~~-~FE~gfd-~~gQtrEha~l------------ 309 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGAS-------QADVAVLVVDASTG-EFESGFD-PGGQTREHALL------------ 309 (603)
T ss_pred ecCceeEEEecCCCccccchhhhcccc-------ccceEEEEEECCcc-hhhhccC-CCCchHHHHHH------------
Confidence 122237899999996554 22222221 39999999998752 3322222 22233333211
Q ss_pred cccccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHH-HHcC-----CeEEEEeccCCCCHHHH
Q psy11649 158 HFRTADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNG-----ASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 158 ~~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-~~~G-----a~l~etSAK~~~nId~L 228 (890)
++.+| --++|+.||+|++ +-+.+..+.|...+..|- +..| +.|++||+.+|+|+-..
T Consensus 310 -------------lr~Lgi~qlivaiNKmD~V-~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 310 -------------LRSLGISQLIVAINKMDLV-SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred -------------HHHcCcceEEEEeeccccc-CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 22223 2478899999986 344456677777777777 4445 36999999999998765
No 462
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.25 E-value=0.00089 Score=69.11 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|+|||+||+|+...-. .. .++...+...|++|++.+.|++.++.+|..++
T Consensus 153 ~~~viiV~NK~Dl~~~~~---~~-------~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 153 DIPMILVLNKIDLLDDEE---LE-------ERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCEEEEEEccccCChHH---HH-------HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 479999999999974311 11 44566788899999999999999999998754
No 463
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.25 E-value=0.002 Score=66.80 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=36.2
Q ss_pred EEEEeecccCCCCCCcchhhhhHHHHHHHHHH--cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 178 LILIGGKYDLFENLEPNKKRIAVQCLRYLAHV--NGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 178 iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~--~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
=++|.||.|+.. .-....+..++-+++ -+++++++|+++|+|++++.+++...
T Consensus 145 DllVInK~DLa~-----~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 145 DLLVINKTDLAP-----YVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred eEEEEehHHhHH-----HhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 378999999963 111111222333333 25889999999999999998888654
No 464
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.22 E-value=0.0005 Score=68.40 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=37.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
...+++++|.+|||||||+|.|++... ...+.++.+..... . ...+.+.||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~----~--~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK----L--DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE----e--cCCEEEEECCCC
Confidence 467899999999999999999998531 22244443322211 1 125899999993
No 465
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.22 E-value=0.0014 Score=67.01 Aligned_cols=113 Identities=15% Similarity=0.109 Sum_probs=70.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+++|...+..+... .+. + .-.+++|+|.+.|.++ .....|+..+-+...
T Consensus 63 ~~~~D~~G~~~~~~~~~~--~~~--~--ad~ii~vvD~~~~~~~-~~~~~~l~~l~~~~~-------------------- 115 (184)
T smart00178 63 FTTFDLGGHQQARRLWKD--YFP--E--VNGIVYLVDAYDKERF-AESKRELDALLSDEE-------------------- 115 (184)
T ss_pred EEEEECCCCHHHHHHHHH--HhC--C--CCEEEEEEECCcHHHH-HHHHHHHHHHHcChh--------------------
Confidence 589999998766555444 222 2 2378999999999776 444444332211000
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH--HHH-----HHcC-Cc
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR--YLA-----HVNG-AS 544 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR--~fc-----l~yG-As 544 (890)
-.++|++||+||+|+-...+.++ |...+. ... .... -.
T Consensus 116 -------------------------------~~~~piliv~NK~Dl~~~~~~~~---i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 116 -------------------------------LATVPFLILGNKIDAPYAASEDE---LRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred -------------------------------hcCCCEEEEEeCccccCCCCHHH---HHHHcCCCcccccccccCCceeE
Confidence 01489999999999865444443 222221 000 0111 23
Q ss_pred eeEeccCChhhHHHHHHHHhhh
Q psy11649 545 LLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 545 L~ftS~K~~~n~~~l~kyi~hr 566 (890)
++.||++.+.+++.+.++|..+
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 8999999999999999999765
No 466
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0023 Score=74.18 Aligned_cols=139 Identities=20% Similarity=0.246 Sum_probs=81.9
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSS 105 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~ 105 (890)
..+..+=|+|+|+||+|||||+..|..+- ......++ ...|+. .++.+.++|. .+.+++....-
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~---RRiTflEcp~--Dl~~miDvaKI 133 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKT---RRITFLECPS--DLHQMIDVAKI 133 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------Eeecce---eEEEEEeChH--HHHHHHhHHHh
Confidence 35667788999999999999999887631 11112222 122322 2799999994 45666666522
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE-EEeec
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI-LIGGK 184 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI-VVgNK 184 (890)
+|.|++.+|..-.-.+ +. ..++..+.. .|.|-| -|++-
T Consensus 134 -------aDLVlLlIdgnfGfEM-ET-mEFLnil~~--------------------------------HGmPrvlgV~Th 172 (1077)
T COG5192 134 -------ADLVLLLIDGNFGFEM-ET-MEFLNILIS--------------------------------HGMPRVLGVVTH 172 (1077)
T ss_pred -------hheeEEEeccccCcee-hH-HHHHHHHhh--------------------------------cCCCceEEEEee
Confidence 8999999998764443 22 233332222 255654 48999
Q ss_pred ccCCCCCCcchhhhhH-HHHHHHHHHc-CCeEEEEeccCC
Q psy11649 185 YDLFENLEPNKKRIAV-QCLRYLAHVN-GASLLFHSSLDP 222 (890)
Q Consensus 185 ~Dl~~d~d~e~r~~i~-~~lr~la~~~-Ga~l~etSAK~~ 222 (890)
.|++.+.+. .|..-. ..-|.|..-| |+.+|+.|...+
T Consensus 173 lDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 173 LDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred cccccChHH-HHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 999853221 111100 1112333333 899999996543
No 467
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.17 E-value=0.0018 Score=64.97 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=43.8
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHH--------------cCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV--------------NGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~--------------yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|++||+||+|+.. ++..+.+...++..... .+...|++|++++.|++.++.+|.+++
T Consensus 114 ~~~i~iv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 114 GLPIIVAINKIDRVG---EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred CCCeEEEEECCCCcc---hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 478999999999995 23333333334433333 468889999999999999999998875
No 468
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.15 E-value=0.0019 Score=69.82 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=34.1
Q ss_pred CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH-------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-------NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~-------~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.=++|+||+|+. .-+....+++...+. +.-+++.|||.++.|+++|.+.|....
T Consensus 168 iaDi~vVNKaD~~------gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 168 IADIFVVNKADRP------GADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp H-SEEEEE--SHH------HHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hccEEEEeCCChH------HHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4558999999973 222223333333332 124799999999999999998887653
No 469
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.13 E-value=0.002 Score=72.91 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=73.1
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchH------HHHHHHHHHHHHHHhhhhhhhhhcccc
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLW------TEAETFLAKFRAIFESNESVREKRGSF 156 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~------~~L~~wlq~I~e~~~~ll~~~~~~~~l 156 (890)
..+.+||++|+...+..+..+ +. ++++||+|+|+++..... +.+..-+..+...+..
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~----f~--~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~----------- 246 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHC----FD--NVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS----------- 246 (342)
T ss_pred eEEEEEecCCchhhhhhHHHH----hC--CCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC-----------
Confidence 368999999999888888887 22 689999999999743110 1122222222222211
Q ss_pred ccccccccccccccccCCCCcEEEEeecccCCCC-------------CCcc-----hhhhhHHHHHHHHHH---cCCeEE
Q psy11649 157 EHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-------------LEPN-----KKRIAVQCLRYLAHV---NGASLL 215 (890)
Q Consensus 157 ~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-------------~d~e-----~r~~i~~~lr~la~~---~Ga~l~ 215 (890)
-.-.++|++|++||.|++.. +... ..+.+......+... ..+-..
T Consensus 247 --------------~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h 312 (342)
T smart00275 247 --------------RWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHH 312 (342)
T ss_pred --------------ccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEE
Confidence 01125899999999998642 1110 011222222222111 123467
Q ss_pred EEeccCCCCHHHHHHHHHHHHhc
Q psy11649 216 FHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 216 etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+|+|.+-.++..+.+.+...+..
T Consensus 313 ~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 313 FTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred EeeecccHHHHHHHHHHHHHHHH
Confidence 78888888888887777766643
No 470
>KOG0395|consensus
Probab=97.10 E-value=0.0046 Score=64.57 Aligned_cols=115 Identities=22% Similarity=0.258 Sum_probs=77.3
Q ss_pred ccCceeEEEEeCCCc--ccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccc
Q psy11649 388 VTADICHLWELGSGT--SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE 465 (890)
Q Consensus 388 ~~kdi~~vW~L~G~~--~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~ 465 (890)
.+..+|++++||... .+..+... . ....-..++|.+.+.+.++ +.++.+.+++ .++..
T Consensus 46 v~~~~~~l~ilDt~g~~~~~~~~~~----~--~~~~~gF~lVysitd~~SF-~~~~~l~~~I-~r~~~------------ 105 (196)
T KOG0395|consen 46 VDGEVCMLEILDTAGQEEFSAMRDL----Y--IRNGDGFLLVYSITDRSSF-EEAKQLREQI-LRVKG------------ 105 (196)
T ss_pred ECCEEEEEEEEcCCCcccChHHHHH----h--hccCcEEEEEEECCCHHHH-HHHHHHHHHH-HHhhC------------
Confidence 346667666666543 22222222 1 1122367999999999999 6666666666 22221
Q ss_pred ccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCce
Q psy11649 466 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASL 545 (890)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL 545 (890)
. + -+|+|+||+|+|+... +..-.+..+.+|..++++.
T Consensus 106 ----------------~-----------~-----------~~PivlVGNK~Dl~~~-----R~V~~eeg~~la~~~~~~f 142 (196)
T KOG0395|consen 106 ----------------R-----------D-----------DVPIILVGNKCDLERE-----RQVSEEEGKALARSWGCAF 142 (196)
T ss_pred ----------------c-----------C-----------CCCEEEEEEcccchhc-----cccCHHHHHHHHHhcCCcE
Confidence 0 0 1899999999999852 2223333566699999999
Q ss_pred eEeccCChhhHHHHHHHHhh
Q psy11649 546 LFHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 546 ~ftS~K~~~n~~~l~kyi~h 565 (890)
+=||+|...|++.++.-|.+
T Consensus 143 ~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 143 IETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred EEeeccCCcCHHHHHHHHHH
Confidence 99999999999998888877
No 471
>KOG0468|consensus
Probab=97.09 E-value=0.0022 Score=75.77 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=74.8
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCc----------------cceeEEE--EEEe-ccccc-eEEEEEEc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTL----------------ALEYIYA--RKSG-KTVMK-DICHLWEL 90 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kpti----------------gvdY~f~--~~~g-~~~~k-~~l~IwDl 90 (890)
...-.+|.++|.-..|||+|+..|.++.. ...+.. |+...-. +... ....+ ..++|.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34457899999999999999999987421 000000 1111000 1111 11222 27899999
Q ss_pred CCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649 91 GSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG 169 (890)
Q Consensus 91 pG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~ 169 (890)
||+-.|.+-.... +. +|++++|+|+-.--.+ +.++.+. ..+++
T Consensus 205 PGHVnF~DE~ta~l~~-------sDgvVlvvDv~EGVml--ntEr~ik---haiq~------------------------ 248 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRL-------SDGVVLVVDVAEGVML--NTERIIK---HAIQN------------------------ 248 (971)
T ss_pred CCcccchHHHHHHhhh-------cceEEEEEEcccCcee--eHHHHHH---HHHhc------------------------
Confidence 9998886655544 43 8999999999887666 5454433 32322
Q ss_pred cccCCCCcEEEEeecccCC
Q psy11649 170 LIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 170 li~~l~IPiIVVgNK~Dl~ 188 (890)
..|+++|.||+|++
T Consensus 249 -----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 249 -----RLPIVVVINKVDRL 262 (971)
T ss_pred -----cCcEEEEEehhHHH
Confidence 58999999999974
No 472
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.09 E-value=0.00074 Score=75.71 Aligned_cols=55 Identities=24% Similarity=0.202 Sum_probs=38.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT 94 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~ 94 (890)
...++.|||-||||||||||+|.++. ....|+++-.... ..... .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~----i~~~~--~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW----IKLDD--GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEE----EEcCC--CeEEecCCCcC
Confidence 35779999999999999999999963 2344665544211 11111 48999999963
No 473
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.09 E-value=0.0021 Score=66.00 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=44.2
Q ss_pred CCcEEEEEeccccccCCC-hhHHHHHHHHHHH-HHH--HcCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 506 PVPLILIGGKYDLFENLE-PNKKRIAVQCLRY-LAH--VNGASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~-~E~~d~Iq~~lR~-fcl--~yGAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
++|++||+||+|+...-+ .+..+.+++.++. ++. ..+...|++|++.+.|++.|+.+|.+.+-
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 578999999999973211 1123344444433 221 24678999999999999999999998763
No 474
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.08 E-value=0.003 Score=71.13 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=66.3
Q ss_pred EEEEEEeCCCch--hHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccccc
Q psy11649 423 TLVLMLDLSRLN--SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKG 500 (890)
Q Consensus 423 ~viivlDlS~Pw--~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 500 (890)
++++|+|++.+. +.+++++.|.+.+...... +
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~----------------------------l------------------ 271 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE----------------------------L------------------ 271 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhh----------------------------h------------------
Confidence 899999999872 4558888888777654321 0
Q ss_pred ccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 501 LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 501 l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
...|+|||+||+|+... +. +++.+..++..+|..+|++|++...+++.++.+|...+
T Consensus 272 ----~~kp~IIV~NK~DL~~~---~~---~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 272 ----AEKPRIVVLNKIDLLDE---EE---LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ----ccCCEEEEEeCccCCCh---HH---HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 13689999999998632 22 34445566777788999999999999999999987653
No 475
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.05 E-value=0.003 Score=64.21 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=74.8
Q ss_pred CceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649 390 ADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT 469 (890)
Q Consensus 390 kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~ 469 (890)
+-.+++|++||+..+..+-+.. ... .-.||+|+|-|.+..+-++.+...+.+ .. .
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y--~~~----~~~iIfVvDssd~~~l~e~~~~L~~ll----~~----~----------- 111 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSY--FQN----ADGIIFVVDSSDPERLQEAKEELKELL----ND----P----------- 111 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGG--HTT----ESEEEEEEETTGGGGHHHHHHHHHHHH----TS----G-----------
T ss_pred cEEEEEEeccccccccccceee--ccc----cceeEEEEecccceeecccccchhhhc----ch----h-----------
Confidence 3456899999998888776662 221 237999999999987633333222111 10 0
Q ss_pred ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH--HcCCceeE
Q psy11649 470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH--VNGASLLF 547 (890)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl--~yGAsL~f 547 (890)
..-++|++|+++|.|.-..++.++.... +.---+ ...-.++-
T Consensus 112 ---------------------------------~~~~~piLIl~NK~D~~~~~~~~~i~~~---l~l~~l~~~~~~~v~~ 155 (175)
T PF00025_consen 112 ---------------------------------ELKDIPILILANKQDLPDAMSEEEIKEY---LGLEKLKNKRPWSVFS 155 (175)
T ss_dssp ---------------------------------GGTTSEEEEEEESTTSTTSSTHHHHHHH---TTGGGTTSSSCEEEEE
T ss_pred ---------------------------------hcccceEEEEeccccccCcchhhHHHhh---hhhhhcccCCceEEEe
Confidence 0015899999999998866665554321 111112 24456888
Q ss_pred eccCChhhHHHHHHHHhh
Q psy11649 548 HSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 548 tS~K~~~n~~~l~kyi~h 565 (890)
||++.+.+++...+.|..
T Consensus 156 ~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 156 CSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp EBTTTTBTHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHh
Confidence 999999999998888764
No 476
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.03 E-value=0.0019 Score=63.26 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=48.5
Q ss_pred cCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
.+|++++|+|++++.+..+ .+..|+... ..+.|+++|+||+|+..
T Consensus 11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---------------------------------~~~k~~iivlNK~DL~~- 56 (141)
T cd01857 11 RSDIVVQIVDARNPLLFRPPDLERYVKEV---------------------------------DPRKKNILLLNKADLLT- 56 (141)
T ss_pred hCCEEEEEEEccCCcccCCHHHHHHHHhc---------------------------------cCCCcEEEEEechhcCC-
Confidence 4999999999999876421 333333210 02579999999999852
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCC
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGL 224 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~n 224 (890)
+.. . ....+.....+..++++||+++.+
T Consensus 57 ----~~~-~-~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 57 ----EEQ-R-KAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred ----HHH-H-HHHHHHHHhcCCeEEEEEecCCCc
Confidence 111 1 233344556678899999998875
No 477
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.02 E-value=0.0034 Score=59.75 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=69.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCc-hhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~P-w~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
+.+|+.+|...+..+... . ... ...++.++|++-. .++-+.++.|+..+....+
T Consensus 52 ~~~~D~~G~~~~~~~~~~--~-~~~---~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~------------------- 106 (161)
T TIGR00231 52 FNLLDTAGQEDYRAIRRL--Y-YRA---VESSLRVFDIVILVLDVEEILEKQTKEIIHHAE------------------- 106 (161)
T ss_pred EEEEECCCcccchHHHHH--H-Hhh---hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-------------------
Confidence 368999997666555444 1 111 2267788999887 6664444455554433211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
. ++|++||+||.|+...- ...+..+.+....+-..+.+|++
T Consensus 107 --------------------------------~-~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~sa~ 147 (161)
T TIGR00231 107 --------------------------------S-NVPIILVGNKIDLRDAK------LKTHVAFLFAKLNGEPIIPLSAE 147 (161)
T ss_pred --------------------------------c-CCcEEEEEEcccCCcch------hhHHHHHHHhhccCCceEEeecC
Confidence 0 47899999999997421 22233333334445679999999
Q ss_pred ChhhHHHHHHHHh
Q psy11649 552 DPGLVKRTRDILN 564 (890)
Q Consensus 552 ~~~n~~~l~kyi~ 564 (890)
++.+++.++++|.
T Consensus 148 ~~~gv~~~~~~l~ 160 (161)
T TIGR00231 148 TGKNIDSAFKIVE 160 (161)
T ss_pred CCCCHHHHHHHhh
Confidence 9999999998874
No 478
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.01 E-value=0.0042 Score=61.83 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=65.9
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-.++|+.+|...+...... .+. . .-.+++|+|.+.+..+ +....|+..+.....
T Consensus 59 ~~~~~D~~G~~~~~~~~~~--~~~--~--~~~ii~v~D~~~~~~~-~~~~~~~~~~~~~~~------------------- 112 (173)
T cd04155 59 KLNVWDIGGQRAIRPYWRN--YFE--N--TDCLIYVIDSADKKRL-EEAGAELVELLEEEK------------------- 112 (173)
T ss_pred EEEEEECCCCHHHHHHHHH--Hhc--C--CCEEEEEEeCCCHHHH-HHHHHHHHHHHhChh-------------------
Confidence 3578999998554433332 111 1 1268999999998876 443444333221100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~ 550 (890)
..++|++||++|+|.....+ .+.+.+.+....+... ...+.+|+
T Consensus 113 --------------------------------~~~~p~ivv~nK~D~~~~~~---~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 113 --------------------------------LAGVPVLVFANKQDLATAAP---AEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred --------------------------------hcCCCEEEEEECCCCccCCC---HHHHHHHcCCcccCCCeEEEEEeEC
Confidence 01489999999999864322 1222222221111111 12578999
Q ss_pred CChhhHHHHHHHHhh
Q psy11649 551 LDPGLVKRTRDILNH 565 (890)
Q Consensus 551 K~~~n~~~l~kyi~h 565 (890)
+.+.|++.++++|.+
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999998864
No 479
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0057 Score=67.49 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=97.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC-----CCCCCCCcc--ceeEEE---------------EEE-----ecccc-ceEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK-----NDTPKPTLA--LEYIYA---------------RKS-----GKTVM-KDIC 85 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~-----~~~~kptig--vdY~f~---------------~~~-----g~~~~-k~~l 85 (890)
.+.+|-++|----|||||..+|++- .+..+-+++ +.|.-. ... +.... -..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4789999999999999999999982 122222222 122111 111 00000 1178
Q ss_pred EEEEcCCCcchh-hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccc
Q psy11649 86 HLWELGSGTSRL-EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 164 (890)
Q Consensus 86 ~IwDlpG~~~~~-~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~ 164 (890)
.+.|.||++-+- .++ ....+ -|++++|++.+.+.-- -+-++|+..+.
T Consensus 89 SfVDaPGHe~LMATML---sGAAl----MDgAlLvIaANEpcPQ--------PQT~EHl~Ale----------------- 136 (415)
T COG5257 89 SFVDAPGHETLMATML---SGAAL----MDGALLVIAANEPCPQ--------PQTREHLMALE----------------- 136 (415)
T ss_pred EEeeCCchHHHHHHHh---cchhh----hcceEEEEecCCCCCC--------CchHHHHHHHh-----------------
Confidence 999999986431 111 11112 3789999998875432 11122222100
Q ss_pred ccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH---cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 165 HRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 165 ~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.. -.-+++|-||+|+.. .|+.....+++.+|.+- -+++++.+||..+.||+.|.++|...+
T Consensus 137 ------Iig-ik~iiIvQNKIDlV~---~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 137 ------IIG-IKNIIIVQNKIDLVS---RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred ------hhc-cceEEEEecccceec---HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 101 134899999999973 22323334445555543 368999999999999999999999987
No 480
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.00 E-value=0.005 Score=59.95 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=42.3
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr 566 (890)
++|+|+|+||.|+..... +......++..+|+..|.+|++.+.|++.++..|...
T Consensus 101 ~~~~iiv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 101 GLPVVVALNMIDEAEKRG------IKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred CCCEEEEEehhhhccccc------chhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 478999999999974321 1122335666679999999999999999999988764
No 481
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0067 Score=74.27 Aligned_cols=113 Identities=14% Similarity=0.033 Sum_probs=72.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC------CC--------------CCCccceeEEEEEEeccccceEEEEEEcCC
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND------TP--------------KPTLALEYIYARKSGKTVMKDICHLWELGS 92 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~------~~--------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG 92 (890)
..-.+|.++|.-.+|||||..+++-..+ +. .-++++.-. ..........+++++||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~sa--a~s~~~~~~~~iNlIDTPG 85 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSA--ATTLFWKGDYRINLIDTPG 85 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeee--eeEEEEcCceEEEEeCCCC
Confidence 3467899999999999999999875211 11 111222211 1111111135899999999
Q ss_pred CcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649 93 GTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI 171 (890)
Q Consensus 93 ~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li 171 (890)
+-.|..-+... +- .|++|+|+|...--.. ..-.-|.+.
T Consensus 86 HVDFt~EV~rslrv-------lDgavvVvdaveGV~~-QTEtv~rqa--------------------------------- 124 (697)
T COG0480 86 HVDFTIEVERSLRV-------LDGAVVVVDAVEGVEP-QTETVWRQA--------------------------------- 124 (697)
T ss_pred ccccHHHHHHHHHh-------hcceEEEEECCCCeee-cHHHHHHHH---------------------------------
Confidence 98886655544 43 8999999999874432 222334431
Q ss_pred cCCCCcEEEEeecccCC
Q psy11649 172 RTFPVPLILIGGKYDLF 188 (890)
Q Consensus 172 ~~l~IPiIVVgNK~Dl~ 188 (890)
...++|.+++.||+|..
T Consensus 125 ~~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 125 DKYGVPRILFVNKMDRL 141 (697)
T ss_pred hhcCCCeEEEEECcccc
Confidence 12379999999999986
No 482
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.97 E-value=0.0035 Score=62.18 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=66.7
Q ss_pred EEEEEEeCCCch-----hHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcc
Q psy11649 423 TLVLMLDLSRLN-----SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 497 (890)
Q Consensus 423 ~viivlDlS~Pw-----~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (890)
++++|+|.+.+. ...+.++.|...+..+.....
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 114 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI------------------------------------------ 114 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhH------------------------------------------
Confidence 799999999994 455888888776654322100
Q ss_pred cccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 498 DKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 498 d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
.....++|++||+||+|+... +....+. .+..+...+...+.+|++.+.+++.+++.|.+.+
T Consensus 115 ---~~~~~~~p~ivv~NK~Dl~~~---~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 115 ---LGLLTAKPVIYVLNKIDLDDA---EELEEEL--VRELALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred ---HHHHhhCCeEEEEEchhcCch---hHHHHHH--HHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 000124899999999999742 2221111 5666777889999999999999999999887653
No 483
>KOG2655|consensus
Probab=96.91 E-value=0.0076 Score=68.07 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=81.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--C---------CCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcch-----
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--D---------TPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSR----- 96 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~---------~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~----- 96 (890)
-+++++++|++|.|||||+|.|+..+ . ....|+.++ ..+... ...-+..+.|.||||--..
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~--~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIE--STKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceee--eeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 47999999999999999999998752 1 122233433 212222 2222338999999994211
Q ss_pred ---------hhHHhhh--------hccc--cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649 97 ---------LEVASLF--------SSFS--LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE 157 (890)
Q Consensus 97 ---------~~Li~~~--------r~~~--~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~ 157 (890)
.+-...| |... -+ .+++++.+.-+.- .+ .-+. +..+++..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~R---VH~cLYFI~P~gh-gL-~p~D--i~~Mk~l~-------------- 156 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNR---VHCCLYFISPTGH-GL-KPLD--IEFMKKLS-------------- 156 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCc---eEEEEEEeCCCCC-CC-cHhh--HHHHHHHh--------------
Confidence 1111111 2111 13 5677777653321 11 1111 01111111
Q ss_pred cccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccC
Q psy11649 158 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 221 (890)
Q Consensus 158 ~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~ 221 (890)
..+.+|-|..|+|.+. .++.......+++-...+++.++....-.
T Consensus 157 ----------------~~vNiIPVI~KaD~lT---~~El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 157 ----------------KKVNLIPVIAKADTLT---KDELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred ----------------ccccccceeeccccCC---HHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 1467888899999873 34555566677777788888876655443
No 484
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.91 E-value=0.0039 Score=75.31 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=50.0
Q ss_pred CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHc----CCceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649 506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y----GAsL~ftS~K~~~n~~~l~kyi~hr~fg~ 570 (890)
|+| +|||+||+|+. +++..+.+...++.++..+ ++..|.+|++.+.|++.++++|...+=..
T Consensus 102 gi~~iIVVlNK~Dlv---~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 102 GIPHTIVVITKADRV---NEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCeEEEEEECCCCC---CHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 678 99999999997 4555566677778887776 57899999999999999999887655443
No 485
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.91 E-value=0.0028 Score=82.36 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=69.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCC------------CCCccceeEEEEEEeccccceEEEEEEcCCCcc----------
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEKNDTP------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTS---------- 95 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~~~~~------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~---------- 95 (890)
.+|||++|+||||++++- |-.... .+|-.+++.| ....-++|++|.+-
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf---------~~~avliDtaG~y~~~~~~~~~~~ 183 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF---------TDEAVLIDTAGRYTTQDSDPEEDA 183 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe---------cCCEEEEcCCCccccCCCcccccH
Confidence 699999999999999975 322111 0111122221 11467999999542
Q ss_pred --hhhHHhhh-hccccccccCcEEEEEEeCCCcCch-HHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649 96 --RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSL-WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI 171 (890)
Q Consensus 96 --~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~-~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li 171 (890)
...++... +...-+ ..++||+++|+++.-.- .+.+....+.++..+.++.. .
T Consensus 184 ~~W~~fL~~L~k~R~r~--plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~----------------------~ 239 (1169)
T TIGR03348 184 AAWLGFLGLLRKHRRRQ--PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELRE----------------------Q 239 (1169)
T ss_pred HHHHHHHHHHHHhCCCC--CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHH----------------------H
Confidence 12222222 111111 37999999999875321 13445555666666555332 2
Q ss_pred cCCCCcEEEEeecccCCCC
Q psy11649 172 RTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 172 ~~l~IPiIVVgNK~Dl~~d 190 (890)
-...+||.||.||+|+...
T Consensus 240 lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred hCCCCCEEEEEecchhhcC
Confidence 2346999999999998743
No 486
>KOG1143|consensus
Probab=96.90 E-value=0.003 Score=70.49 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=91.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC---CCC----------------------CCCccc-------eeEEEEEEecc-
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTP----------------------KPTLAL-------EYIYARKSGKT- 79 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~----------------------kptigv-------dY~f~~~~g~~- 79 (890)
.-+.+|+++|...+|||||+--|+.+. ++- ..++|. .|.-.......
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 347899999999999999998877631 110 112221 11110000000
Q ss_pred -ccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649 80 -VMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH 158 (890)
Q Consensus 80 -~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~ 158 (890)
.....+.++|++|..+|..-.-.- -..|. ++..++|+....--.. .-..-+..
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~g-LtgY~---Ph~A~LvVsA~~Gi~~--tTrEHLgl-------------------- 298 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHG-LTGYT---PHFACLVVSADRGITW--TTREHLGL-------------------- 298 (591)
T ss_pred hhhcceEEEeecccchhhheeeeee-cccCC---CceEEEEEEcCCCCcc--ccHHHHHH--------------------
Confidence 011267899999987763322111 11244 8889999887764432 11222211
Q ss_pred ccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHH-----------------------------HHHH
Q psy11649 159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-----------------------------LAHV 209 (890)
Q Consensus 159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~-----------------------------la~~ 209 (890)
+.-+.+|+.++.+|+|+.. ++.....+++ .|..
T Consensus 299 ------------~~AL~iPfFvlvtK~Dl~~------~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~ 360 (591)
T KOG1143|consen 299 ------------IAALNIPFFVLVTKMDLVD------RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSG 360 (591)
T ss_pred ------------HHHhCCCeEEEEEeecccc------chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccC
Confidence 2335799999999999963 2111111221 1112
Q ss_pred cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 210 NGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 210 ~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+=.++|-+|+.+|++.+.++..++-+
T Consensus 361 nivPif~vSsVsGegl~ll~~fLn~L 386 (591)
T KOG1143|consen 361 NIVPIFAVSSVSGEGLRLLRTFLNCL 386 (591)
T ss_pred CceeEEEEeecCccchhHHHHHHhhc
Confidence 23578889999999999998777654
No 487
>KOG0705|consensus
Probab=96.89 E-value=0.0024 Score=74.23 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=100.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
-.+.|+-|||+.++|||+|+++++.+.- ....+.+-.|. +..........+-|.|-+|... . .| ..
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k--kE~vv~gqs~lLlirdeg~~~~-a----Qf------t~ 94 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK--KEVVVDGQSHLLLIRDEGGHPD-A----QF------CQ 94 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCccce--eeEEeeccceEeeeecccCCch-h----hh------hh
Confidence 3578999999999999999999987532 11223333332 2222222233677888877321 1 12 11
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
..|++|+||.+.+..+| +.+....-.+-. ..+...+|+++|+++.=...
T Consensus 95 wvdavIfvf~~~d~~s~-q~v~~l~~~l~~----------------------------~r~r~~i~l~lvgtqd~iS~-- 143 (749)
T KOG0705|consen 95 WVDAVVFVFSVEDEQSF-QAVQALAHEMSS----------------------------YRNISDLPLILVGTQDHISA-- 143 (749)
T ss_pred hccceEEEEEeccccCH-HHHHHHHhhccc----------------------------ccccccchHHhhcCcchhhc--
Confidence 37999999999999998 444443322211 12234689999998753321
Q ss_pred CcchhhhhHHHHHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+ ..+.......++++.. ..+.+|++.+..|.|++..++.+...+
T Consensus 144 ~-~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 144 K-RPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKI 188 (749)
T ss_pred c-cccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHH
Confidence 1 1233444455555554 468999999999999999887776654
No 488
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.87 E-value=0.002 Score=66.15 Aligned_cols=50 Identities=14% Similarity=0.010 Sum_probs=34.1
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHH-------HHcCCceeEeccCChhhHHHH
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-------HVNGASLLFHSSLDPGLVKRT 559 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc-------l~yGAsL~ftS~K~~~n~~~l 559 (890)
++|++||+||+|+... ..+.+...++.++ .++|..++++|++.+.|++-+
T Consensus 117 ~~p~iiv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 117 GLKPIVVINKIDRPDA----RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred CCCEEEEEECCCCCCC----CHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 4789999999999632 2223333344444 345789999999999887433
No 489
>KOG1547|consensus
Probab=96.86 E-value=0.0075 Score=64.12 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=31.7
Q ss_pred HHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 8 DIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 8 ~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
|.++++++.+..+.. .+++|+|||.+|.|||||+|.|..
T Consensus 30 dtI~~Qm~~k~mk~G-----------F~FNIMVVgqSglgkstlinTlf~ 68 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTG-----------FDFNIMVVGQSGLGKSTLINTLFK 68 (336)
T ss_pred HHHHHHHHHHHHhcc-----------CceEEEEEecCCCCchhhHHHHHH
Confidence 667777766665442 379999999999999999999876
No 490
>PRK13796 GTPase YqeH; Provisional
Probab=96.86 E-value=0.005 Score=70.26 Aligned_cols=59 Identities=24% Similarity=0.323 Sum_probs=44.0
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
+.|+++|+||+|+... ...+..+...++.+++.+|+ .++++||+++.|++++.+.|...
T Consensus 96 ~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 96 NNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4699999999999631 11223344456666777776 58999999999999999998765
No 491
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.85 E-value=0.0043 Score=67.99 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=40.1
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.|+++|.||+|+.. ........+.+ ...+..++++||+++.|++.|.+.|...+
T Consensus 48 ~kp~IiVlNK~DL~~------~~~~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 48 NKPRLIVLNKADLAD------PAVTKQWLKYF-EEKGIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred CCCEEEEEEccccCC------HHHHHHHHHHH-HHcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 479999999999852 11122223333 23567889999999999999999988776
No 492
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.83 E-value=0.0016 Score=62.83 Aligned_cols=51 Identities=29% Similarity=0.294 Sum_probs=38.5
Q ss_pred cEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccCChhhHHHHHHHHh
Q psy11649 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILN 564 (890)
Q Consensus 508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K~~~n~~~l~kyi~ 564 (890)
|+|+|+||+|+... .+ ..+.++.++..+|. ..|.+|+|.+.|++.++++|.
T Consensus 90 p~ilv~NK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 90 PVIGLVTKIDLAEA--DV----DIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CeEEEEEeeccCCc--cc----CHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 78999999998631 11 12234566666776 689999999999999999874
No 493
>PRK00098 GTPase RsgA; Reviewed
Probab=96.78 E-value=0.0039 Score=69.19 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=60.3
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccccccc
Q psy11649 423 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLI 502 (890)
Q Consensus 423 ~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 502 (890)
.+++|+|++.|....+-+++|+..++.
T Consensus 83 ~vllV~d~~~p~~~~~~idr~L~~~~~----------------------------------------------------- 109 (298)
T PRK00098 83 QAVLVFAAKEPDFSTDLLDRFLVLAEA----------------------------------------------------- 109 (298)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHH-----------------------------------------------------
Confidence 678999999997665666777665432
Q ss_pred ccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649 503 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 503 ~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr 566 (890)
.++|+|||+||+|+..+ .+ .++. +..++...|..++++|++.+.+++.|+.+|..+
T Consensus 110 --~~ip~iIVlNK~DL~~~--~~---~~~~-~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~gk 165 (298)
T PRK00098 110 --NGIKPIIVLNKIDLLDD--LE---EARE-LLALYRAIGYDVLELSAKEGEGLDELKPLLAGK 165 (298)
T ss_pred --CCCCEEEEEEhHHcCCC--HH---HHHH-HHHHHHHCCCeEEEEeCCCCccHHHHHhhccCc
Confidence 14788999999999621 12 2222 333456678899999999999999999987543
No 494
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.76 E-value=0.0045 Score=62.63 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=38.7
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.|+++|.||+|+.. .. ......+. ....+..++.+||+++.|++++++.+...+
T Consensus 46 ~k~~ilVlNK~Dl~~-----~~-~~~~~~~~-~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 46 NKPRIIVLNKADLAD-----PK-KTKKWLKY-FESKGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCCEEEEEehhhcCC-----hH-HHHHHHHH-HHhcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 469999999999852 11 11112222 223355689999999999999999998875
No 495
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.76 E-value=0.011 Score=60.70 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=44.7
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC------ceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA------SLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA------sL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|+|||.||+|.. +.+..+.+.+....|...+|. +.|++|++.+.|++.|.++|...+
T Consensus 122 ~~p~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 122 GIPIIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp T-SEEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccceEEeeeeccch---hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 58899999999999 333334444444477777764 499999999999999999988754
No 496
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.74 E-value=0.0054 Score=67.69 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=60.7
Q ss_pred EEEEEEeCCCch-hHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649 423 TLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL 501 (890)
Q Consensus 423 ~viivlDlS~Pw-~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 501 (890)
.+++|+|...|+ +. ..+++|+..++.
T Consensus 81 ~vllV~d~~~p~~s~-~~ldr~L~~~~~---------------------------------------------------- 107 (287)
T cd01854 81 QLVIVVSLNEPFFNP-RLLDRYLVAAEA---------------------------------------------------- 107 (287)
T ss_pred EEEEEEEcCCCCCCH-HHHHHHHHHHHH----------------------------------------------------
Confidence 688999999998 55 678888766542
Q ss_pred cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649 502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr 566 (890)
.++|+|+|+||+|+..+ .+. .....++.+.|..++++|++++.+++.|+.+|..+
T Consensus 108 ---~~ip~iIVlNK~DL~~~--~~~-----~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~k 162 (287)
T cd01854 108 ---AGIEPVIVLTKADLLDD--EEE-----ELELVEALALGYPVLAVSAKTGEGLDELREYLKGK 162 (287)
T ss_pred ---cCCCEEEEEEHHHCCCh--HHH-----HHHHHHHHhCCCeEEEEECCCCccHHHHHhhhccc
Confidence 13788999999999743 111 11233445688999999999999999999988753
No 497
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.72 E-value=0.0042 Score=70.72 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=47.8
Q ss_pred CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc---eeEeccCChhhHHHHHHHHhhh
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs---L~ftS~K~~~n~~~l~kyi~hr 566 (890)
.|+++|+||+|+.. .+...+.+.++++.+|..+|.. .+++|++.+.|++.|+++|...
T Consensus 91 ~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 91 NPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCEEEEEEchhhCC--CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 57899999999974 2223567788888889999974 8999999999999999999764
No 498
>PRK01889 GTPase RsgA; Reviewed
Probab=96.71 E-value=0.0072 Score=68.80 Aligned_cols=83 Identities=20% Similarity=0.156 Sum_probs=56.3
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
.+.|.+++|+++..+-+. .-+++++..+. ..++|.+||.||+|+..+
T Consensus 111 ANvD~vliV~s~~p~~~~-~~ldr~L~~a~--------------------------------~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNL-RRIERYLALAW--------------------------------ESGAEPVIVLTKADLCED 157 (356)
T ss_pred EeCCEEEEEEecCCCCCh-hHHHHHHHHHH--------------------------------HcCCCEEEEEEChhcCCC
Confidence 468999999999754443 34445544222 236888999999999631
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
.....+.+..+ ..|.+++++|++++.|++.|.++|.
T Consensus 158 -----~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 158 -----AEEKIAEVEAL--APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -----HHHHHHHHHHh--CCCCcEEEEECCCCccHHHHHHHhh
Confidence 11111233333 4578899999999999999988863
No 499
>KOG0082|consensus
Probab=96.66 E-value=0.027 Score=63.69 Aligned_cols=127 Identities=15% Similarity=0.154 Sum_probs=70.9
Q ss_pred EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHH---hhhhhhhhhcccccccc
Q psy11649 84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIF---ESNESVREKRGSFEHFR 160 (890)
Q Consensus 84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~---~~ll~~~~~~~~l~~~~ 160 (890)
.+.++|.+||.+-+.-+-.+ + .++++||+|+++|........ ..-.+++.+.+ +.+..
T Consensus 196 ~f~~~DvGGQRseRrKWihc----F--e~v~aviF~vslSeYdq~l~E-D~~~NRM~eS~~LF~sI~n------------ 256 (354)
T KOG0082|consen 196 KFRMFDVGGQRSERKKWIHC----F--EDVTAVIFCVSLSEYDQVLEE-DETTNRMHESLKLFESICN------------ 256 (354)
T ss_pred ceEEEeCCCcHHHhhhHHHh----h--cCCCEEEEEEehhhhhhhccc-ccchhHHHHHHHHHHHHhc------------
Confidence 78999999997655555545 2 369999999999986543100 00111111111 11000
Q ss_pred ccccccccccccCCCCcEEEEeecccCCCC-------------CCcc-----hhhhhHHHHHHHHHHc--CCeEEEEecc
Q psy11649 161 TADEHRDKGLIRTFPVPLILIGGKYDLFEN-------------LEPN-----KKRIAVQCLRYLAHVN--GASLLFHSSL 220 (890)
Q Consensus 161 ~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-------------~d~e-----~r~~i~~~lr~la~~~--Ga~l~etSAK 220 (890)
+ ---...++|+..||.|++++ +... ....+....+++.... .+-..+|.|.
T Consensus 257 ----~-----~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~At 327 (354)
T KOG0082|consen 257 ----N-----KWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCAT 327 (354)
T ss_pred ----C-----cccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeec
Confidence 0 00124799999999999853 1111 1122222222222222 2335667888
Q ss_pred CCCCHHHHHHHHHHHHhc
Q psy11649 221 DPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 221 ~~~nId~Lk~~I~~~lf~ 238 (890)
+-.||+.++.++...+..
T Consensus 328 DT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 328 DTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 888999888887777654
No 500
>KOG0088|consensus
Probab=96.63 E-value=0.0091 Score=59.67 Aligned_cols=112 Identities=16% Similarity=0.295 Sum_probs=84.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+|||+-.|+..+..|=.+ --. . .--+++|.|+|...++ .-++.|...+|.-...
T Consensus 64 L~IWDTAGQErfHALGPI--YYR-g---SnGalLVyDITDrdSF-qKVKnWV~Elr~mlGn------------------- 117 (218)
T KOG0088|consen 64 LHIWDTAGQERFHALGPI--YYR-G---SNGALLVYDITDRDSF-QKVKNWVLELRTMLGN------------------- 117 (218)
T ss_pred eeeeeccchHhhhccCce--EEe-C---CCceEEEEeccchHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 489999999777655444 111 1 1247899999999988 8888898887763332
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-|-++|||+|.|+- |++..--|-.-.||..-||--+=||+|+
T Consensus 118 ---------------------------------ei~l~IVGNKiDLE-----eeR~Vt~qeAe~YAesvGA~y~eTSAk~ 159 (218)
T KOG0088|consen 118 ---------------------------------EIELLIVGNKIDLE-----EERQVTRQEAEAYAESVGALYMETSAKD 159 (218)
T ss_pred ---------------------------------eeEEEEecCcccHH-----HhhhhhHHHHHHHHHhhchhheeccccc
Confidence 16679999999984 4444555667788999999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.-+.-|+.-+..+..
T Consensus 160 N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 160 NVGISELFESLTAKMI 175 (218)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9988887766665554
Done!