Query psy11649
Match_columns 890
No_of_seqs 499 out of 2146
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 15:26:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 2.3E-26 7.9E-31 239.3 17.5 166 31-238 9-176 (216)
2 2hxs_A RAB-26, RAS-related pro 99.9 2E-22 7E-27 198.0 17.3 168 33-239 4-174 (178)
3 1z08_A RAS-related protein RAB 99.9 1.4E-21 4.8E-26 190.2 19.4 163 33-237 4-168 (170)
4 3c5c_A RAS-like protein 12; GD 99.9 7.8E-22 2.7E-26 198.0 17.6 166 30-236 16-184 (187)
5 1ek0_A Protein (GTP-binding pr 99.9 1E-21 3.6E-26 190.4 17.9 164 34-236 2-167 (170)
6 1r2q_A RAS-related protein RAB 99.9 1.4E-21 4.7E-26 189.6 18.3 162 33-236 4-167 (170)
7 2efe_B Small GTP-binding prote 99.9 1.4E-21 4.8E-26 192.5 18.5 164 32-237 9-174 (181)
8 2ew1_A RAS-related protein RAB 99.9 1.4E-21 4.8E-26 199.7 19.1 164 33-238 24-189 (201)
9 1z0j_A RAB-22, RAS-related pro 99.9 1.8E-21 6.2E-26 189.1 19.0 162 33-236 4-167 (170)
10 2hup_A RAS-related protein RAB 99.9 1E-21 3.5E-26 199.6 17.8 165 32-238 26-193 (201)
11 1z0f_A RAB14, member RAS oncog 99.9 1.8E-21 6.1E-26 190.7 18.8 164 32-237 12-177 (179)
12 2g6b_A RAS-related protein RAB 99.9 1.5E-21 5E-26 192.2 18.2 164 32-237 7-173 (180)
13 3kkq_A RAS-related protein M-R 99.9 2.2E-21 7.4E-26 192.1 19.4 164 32-237 15-181 (183)
14 1c1y_A RAS-related protein RAP 99.9 2.8E-21 9.7E-26 187.2 19.6 161 34-236 2-165 (167)
15 1zbd_A Rabphilin-3A; G protein 99.9 2.4E-21 8.2E-26 195.6 19.6 164 33-238 6-171 (203)
16 2fu5_C RAS-related protein RAB 99.9 3.5E-22 1.2E-26 197.8 13.2 163 34-238 7-171 (183)
17 1ky3_A GTP-binding protein YPT 99.9 1.7E-21 5.8E-26 191.4 17.9 169 33-237 6-177 (182)
18 3bc1_A RAS-related protein RAB 99.9 2.9E-21 1E-25 191.5 19.4 166 33-238 9-185 (195)
19 3tw8_B RAS-related protein RAB 99.9 1.6E-21 5.6E-26 191.4 17.4 163 33-238 7-171 (181)
20 1kao_A RAP2A; GTP-binding prot 99.9 2.6E-21 8.9E-26 186.7 18.3 161 34-236 2-164 (167)
21 3reg_A RHO-like small GTPase; 99.9 2.5E-21 8.5E-26 194.4 18.7 165 32-238 20-188 (194)
22 2gf9_A RAS-related protein RAB 99.9 2.2E-21 7.5E-26 194.0 18.2 164 32-237 19-184 (189)
23 3tkl_A RAS-related protein RAB 99.9 3.1E-21 1.1E-25 192.8 19.1 164 33-238 14-179 (196)
24 1z2a_A RAS-related protein RAB 99.9 1.8E-21 6.2E-26 188.7 16.9 161 34-237 4-166 (168)
25 3q3j_B RHO-related GTP-binding 99.9 1.9E-21 6.5E-26 200.0 18.0 170 31-238 23-203 (214)
26 3dz8_A RAS-related protein RAB 99.9 4.6E-22 1.6E-26 199.6 13.0 166 31-238 19-186 (191)
27 2bme_A RAB4A, RAS-related prot 99.9 3.9E-21 1.3E-25 190.4 19.5 164 33-238 8-173 (186)
28 2a5j_A RAS-related protein RAB 99.9 1.8E-21 6.2E-26 195.2 17.2 166 31-238 17-184 (191)
29 1g16_A RAS-related protein SEC 99.9 1.3E-21 4.4E-26 190.2 15.4 160 35-237 3-164 (170)
30 1u8z_A RAS-related protein RAL 99.9 5.2E-21 1.8E-25 184.8 19.5 161 34-236 3-165 (168)
31 2il1_A RAB12; G-protein, GDP, 99.9 3E-21 1E-25 194.3 18.1 165 31-237 22-189 (192)
32 2iwr_A Centaurin gamma 1; ANK 99.9 3.7E-21 1.3E-25 189.6 18.2 163 33-238 5-169 (178)
33 3cbq_A GTP-binding protein REM 99.9 3.2E-21 1.1E-25 195.5 18.3 165 32-237 20-187 (195)
34 3t5g_A GTP-binding protein RHE 99.9 2.2E-21 7.5E-26 191.8 16.6 164 33-238 4-169 (181)
35 2fg5_A RAB-22B, RAS-related pr 99.9 4E-21 1.4E-25 193.1 18.6 162 33-236 21-184 (192)
36 3q72_A GTP-binding protein RAD 99.9 2E-21 7E-26 188.7 15.8 161 35-237 2-163 (166)
37 2fn4_A P23, RAS-related protei 99.9 6.4E-21 2.2E-25 187.1 19.5 165 32-238 6-172 (181)
38 2p5s_A RAS and EF-hand domain 99.9 2.5E-21 8.5E-26 195.7 16.8 169 31-236 24-195 (199)
39 1wms_A RAB-9, RAB9, RAS-relate 99.9 8.3E-21 2.8E-25 186.3 20.1 167 33-238 5-174 (177)
40 2bcg_Y Protein YP2, GTP-bindin 99.9 4.1E-21 1.4E-25 194.6 18.2 164 33-238 6-171 (206)
41 2a9k_A RAS-related protein RAL 99.9 7.6E-21 2.6E-25 187.5 19.7 166 31-238 14-181 (187)
42 2oil_A CATX-8, RAS-related pro 99.9 3.9E-21 1.3E-25 192.5 17.8 165 32-238 22-188 (193)
43 2y8e_A RAB-protein 6, GH09086P 99.9 5.4E-21 1.8E-25 187.3 18.2 163 32-236 11-175 (179)
44 3q85_A GTP-binding protein REM 99.9 4.6E-21 1.6E-25 186.7 16.9 162 35-237 2-166 (169)
45 2erx_A GTP-binding protein DI- 99.9 7.7E-21 2.6E-25 184.6 17.9 162 34-236 2-165 (172)
46 4dsu_A GTPase KRAS, isoform 2B 99.9 9.4E-21 3.2E-25 187.5 18.6 162 34-238 3-166 (189)
47 3clv_A RAB5 protein, putative; 99.9 1.2E-20 4.2E-25 187.8 19.6 161 33-237 5-203 (208)
48 1z06_A RAS-related protein RAB 99.9 4.6E-21 1.6E-25 191.7 16.5 164 32-236 17-186 (189)
49 2ce2_X GTPase HRAS; signaling 99.9 2E-20 6.7E-25 180.0 19.9 159 34-236 2-163 (166)
50 2bov_A RAla, RAS-related prote 99.9 1.7E-20 5.7E-25 188.9 20.2 165 32-238 11-177 (206)
51 3oes_A GTPase rhebl1; small GT 99.9 4.5E-21 1.6E-25 194.1 16.1 165 32-238 21-187 (201)
52 2nzj_A GTP-binding protein REM 99.9 7.8E-21 2.7E-25 185.8 17.1 163 34-237 3-168 (175)
53 2o52_A RAS-related protein RAB 99.9 4.8E-21 1.6E-25 194.3 16.0 164 33-238 23-188 (200)
54 2g3y_A GTP-binding protein GEM 99.9 1E-20 3.5E-25 195.9 18.6 165 32-237 34-202 (211)
55 3cpj_B GTP-binding protein YPT 99.9 5.6E-21 1.9E-25 197.0 16.6 164 33-238 11-176 (223)
56 1x3s_A RAS-related protein RAB 99.9 7.7E-21 2.6E-25 189.4 17.0 164 33-238 13-178 (195)
57 2atx_A Small GTP binding prote 99.9 8.7E-21 3E-25 190.1 17.4 166 33-237 16-192 (194)
58 3ihw_A Centg3; RAS, centaurin, 99.9 1.5E-20 5E-25 188.7 18.5 162 30-237 15-179 (184)
59 3bwd_D RAC-like GTP-binding pr 99.8 2.6E-21 8.7E-26 190.8 12.5 161 33-237 6-180 (182)
60 1m7b_A RND3/RHOE small GTP-bin 99.8 8.8E-21 3E-25 189.1 16.6 167 32-237 4-182 (184)
61 4djt_A GTP-binding nuclear pro 99.8 2.7E-21 9.3E-26 197.6 13.2 167 32-239 8-176 (218)
62 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.2E-20 3.9E-25 186.4 17.1 167 33-238 3-180 (186)
63 2atv_A RERG, RAS-like estrogen 99.8 2.2E-20 7.7E-25 188.0 19.4 162 33-237 26-190 (196)
64 3cph_A RAS-related protein SEC 99.8 1E-20 3.6E-25 191.7 16.8 164 32-238 17-182 (213)
65 2j0v_A RAC-like GTP-binding pr 99.8 1.1E-20 3.7E-25 192.4 16.9 162 33-238 7-180 (212)
66 2gco_A H9, RHO-related GTP-bin 99.8 1.1E-20 3.6E-25 191.6 16.6 169 30-237 20-199 (201)
67 2yc2_C IFT27, small RAB-relate 99.8 2.8E-21 9.5E-26 194.6 11.9 169 33-238 18-192 (208)
68 3con_A GTPase NRAS; structural 99.8 2.9E-20 9.8E-25 185.4 18.8 167 29-238 15-183 (190)
69 1vg8_A RAS-related protein RAB 99.8 2E-20 7E-25 188.7 17.4 167 33-238 6-175 (207)
70 2q3h_A RAS homolog gene family 99.8 1.5E-20 5.1E-25 189.4 16.2 168 32-238 17-195 (201)
71 2f7s_A C25KG, RAS-related prot 99.8 6E-21 2.1E-25 194.9 13.3 167 32-238 22-199 (217)
72 2gf0_A GTP-binding protein DI- 99.8 3.4E-20 1.2E-24 185.7 18.3 162 33-236 6-169 (199)
73 3t1o_A Gliding protein MGLA; G 99.8 3.2E-21 1.1E-25 192.0 10.2 161 32-238 11-192 (198)
74 1gwn_A RHO-related GTP-binding 99.8 2.3E-20 8E-25 191.0 16.6 166 33-237 26-203 (205)
75 1upt_A ARL1, ADP-ribosylation 99.8 4.8E-20 1.6E-24 179.5 17.5 163 33-237 5-168 (171)
76 2cjw_A GTP-binding protein GEM 99.8 3.6E-20 1.2E-24 187.3 17.0 163 34-237 5-171 (192)
77 4bas_A ADP-ribosylation factor 99.8 6.8E-20 2.3E-24 183.5 18.7 174 30-238 12-189 (199)
78 2j1l_A RHO-related GTP-binding 99.8 3.4E-20 1.2E-24 190.1 16.6 167 33-238 32-209 (214)
79 2fv8_A H6, RHO-related GTP-bin 99.8 5.5E-20 1.9E-24 187.2 16.7 169 31-238 21-200 (207)
80 1r8s_A ADP-ribosylation factor 99.8 4.6E-20 1.6E-24 178.7 15.3 159 36-236 1-160 (164)
81 4gzl_A RAS-related C3 botulinu 99.8 6.8E-20 2.3E-24 186.6 16.2 166 32-236 27-203 (204)
82 3llu_A RAS-related GTP-binding 99.8 2.6E-20 9E-25 188.0 13.1 170 30-236 15-195 (196)
83 2zej_A Dardarin, leucine-rich 99.8 2.7E-20 9.1E-25 186.1 12.6 162 35-238 2-178 (184)
84 3gj0_A GTP-binding nuclear pro 99.8 1.1E-20 3.8E-25 194.0 9.0 163 32-239 12-176 (221)
85 1zj6_A ADP-ribosylation factor 99.8 1.3E-19 4.5E-24 180.8 15.2 157 35-238 16-178 (187)
86 1zd9_A ADP-ribosylation factor 99.8 1.1E-19 3.9E-24 181.9 14.7 163 32-236 19-183 (188)
87 1m2o_B GTP-binding protein SAR 99.8 1.8E-19 6.2E-24 181.4 15.5 154 34-234 22-188 (190)
88 1f6b_A SAR1; gtpases, N-termin 99.8 1.2E-19 4.2E-24 184.1 14.2 155 34-235 24-196 (198)
89 1mky_A Probable GTP-binding pr 99.8 5.1E-18 1.8E-22 193.8 29.4 148 36-236 2-164 (439)
90 2b6h_A ADP-ribosylation factor 99.8 1.1E-19 3.7E-24 183.4 13.3 163 32-236 26-189 (192)
91 2h17_A ADP-ribosylation factor 99.8 9.8E-20 3.4E-24 181.0 12.5 163 30-234 16-179 (181)
92 2hjg_A GTP-binding protein ENG 99.8 1.2E-19 4E-24 207.3 14.4 149 35-236 3-163 (436)
93 2h57_A ADP-ribosylation factor 99.8 3.3E-19 1.1E-23 178.3 15.9 160 32-236 18-185 (190)
94 1ksh_A ARF-like protein 2; sma 99.8 3.2E-19 1.1E-23 177.3 15.6 157 34-237 17-179 (186)
95 1fzq_A ADP-ribosylation factor 99.8 1.9E-19 6.5E-24 179.6 12.8 156 34-236 15-176 (181)
96 3l0i_B RAS-related protein RAB 99.8 1.9E-21 6.6E-26 196.5 -2.4 162 33-236 31-194 (199)
97 3i8s_A Ferrous iron transport 99.8 4.7E-20 1.6E-24 198.0 8.0 154 34-236 2-167 (274)
98 2x77_A ADP-ribosylation factor 99.8 2.1E-19 7.2E-24 179.3 11.9 162 34-237 21-183 (189)
99 2wji_A Ferrous iron transport 99.8 6.9E-19 2.3E-23 172.8 14.9 153 34-236 2-163 (165)
100 3r7w_A Gtpase1, GTP-binding pr 99.8 1.8E-18 6E-23 188.7 18.5 161 34-236 2-179 (307)
101 2f9l_A RAB11B, member RAS onco 99.8 3.6E-18 1.2E-22 172.7 17.4 163 34-238 4-168 (199)
102 1moz_A ARL1, ADP-ribosylation 99.8 4.9E-19 1.7E-23 174.9 10.4 157 34-237 17-179 (183)
103 2wkq_A NPH1-1, RAS-related C3 99.8 3.1E-18 1.1E-22 185.5 17.2 165 34-237 154-329 (332)
104 3iby_A Ferrous iron transport 99.8 1.7E-19 5.9E-24 192.1 6.0 151 36-235 2-164 (256)
105 2fh5_B SR-beta, signal recogni 99.8 9.9E-18 3.4E-22 170.7 18.5 164 34-235 6-213 (214)
106 3th5_A RAS-related C3 botulinu 99.6 3.3E-20 1.1E-24 187.9 0.0 165 33-236 28-203 (204)
107 1oix_A RAS-related protein RAB 99.8 8.4E-18 2.9E-22 169.6 17.5 161 34-236 28-190 (191)
108 3c5h_A Glucocorticoid receptor 99.8 1.1E-18 3.9E-23 185.0 11.5 170 31-236 15-253 (255)
109 3a1s_A Iron(II) transport prot 99.8 2.7E-18 9.1E-23 183.0 13.2 153 34-236 4-165 (258)
110 4dcu_A GTP-binding protein ENG 99.8 8.6E-18 2.9E-22 192.9 18.1 152 32-236 20-183 (456)
111 2lkc_A Translation initiation 99.8 1.5E-18 5.1E-23 170.3 10.0 159 32-237 5-170 (178)
112 2wjg_A FEOB, ferrous iron tran 99.8 4.9E-18 1.7E-22 168.7 13.4 156 32-237 4-168 (188)
113 2qu8_A Putative nucleolar GTP- 99.7 1.7E-17 5.8E-22 171.7 17.8 165 33-238 27-205 (228)
114 2gj8_A MNME, tRNA modification 99.7 9.7E-18 3.3E-22 166.3 13.7 154 35-236 4-164 (172)
115 3pqc_A Probable GTP-binding pr 99.7 8E-17 2.7E-21 160.0 19.2 160 32-236 20-192 (195)
116 3b1v_A Ferrous iron uptake tra 99.7 5.8E-18 2E-22 182.1 11.8 151 35-236 3-162 (272)
117 3r7w_B Gtpase2, GTP-binding pr 99.7 4.8E-18 1.7E-22 186.8 11.4 158 37-236 1-172 (331)
118 3o47_A ADP-ribosylation factor 99.7 6.3E-18 2.2E-22 186.3 12.3 163 33-237 163-326 (329)
119 2cxx_A Probable GTP-binding pr 99.7 1.4E-17 4.9E-22 165.0 13.4 153 36-237 2-183 (190)
120 2dyk_A GTP-binding protein; GT 99.7 2.7E-17 9.3E-22 158.4 14.7 148 36-236 2-160 (161)
121 3lvq_E ARF-GAP with SH3 domain 99.7 1.8E-17 6.2E-22 191.6 15.2 163 32-236 319-482 (497)
122 1svi_A GTP-binding protein YSX 99.7 6.2E-17 2.1E-21 161.7 17.0 160 32-236 20-193 (195)
123 3k53_A Ferrous iron transport 99.7 1.8E-17 6E-22 177.1 11.6 155 34-237 2-165 (271)
124 1nrj_B SR-beta, signal recogni 99.7 2.7E-17 9.1E-22 168.0 11.1 154 33-225 10-171 (218)
125 3dpu_A RAB family protein; roc 99.7 3.2E-17 1.1E-21 191.7 11.3 161 32-237 38-207 (535)
126 4dhe_A Probable GTP-binding pr 99.7 3.5E-16 1.2E-20 160.0 16.7 162 32-236 26-209 (223)
127 3iev_A GTP-binding protein ERA 99.7 8.3E-16 2.8E-20 167.8 19.8 162 31-238 6-182 (308)
128 2hjg_A GTP-binding protein ENG 99.7 2.6E-16 8.9E-21 179.6 14.6 185 2-237 151-348 (436)
129 4dcu_A GTP-binding protein ENG 99.6 9.6E-16 3.3E-20 175.9 15.7 180 2-237 171-368 (456)
130 3gee_A MNME, tRNA modification 99.6 4.2E-15 1.4E-19 171.7 14.7 158 34-236 232-396 (476)
131 1wf3_A GTP-binding protein; GT 99.6 9.5E-15 3.3E-19 159.2 16.2 158 34-236 6-171 (301)
132 2e87_A Hypothetical protein PH 99.6 5.3E-14 1.8E-18 156.4 19.7 157 34-237 166-335 (357)
133 1mky_A Probable GTP-binding pr 99.5 3.8E-14 1.3E-18 161.9 16.4 191 2-236 152-353 (439)
134 3sjy_A Translation initiation 99.5 1.9E-13 6.4E-18 154.5 20.8 159 33-236 6-190 (403)
135 2ged_A SR-beta, signal recogni 99.5 2.3E-14 7.8E-19 143.0 11.2 118 33-189 46-170 (193)
136 1xzp_A Probable tRNA modificat 99.5 1.3E-14 4.6E-19 167.7 10.2 154 35-237 243-404 (482)
137 1lnz_A SPO0B-associated GTP-bi 99.5 1.9E-14 6.6E-19 159.6 10.6 157 37-237 160-329 (342)
138 1wb1_A Translation elongation 99.5 7.6E-14 2.6E-18 161.5 14.9 162 30-237 14-188 (482)
139 3lxx_A GTPase IMAP family memb 99.5 3.8E-13 1.3E-17 140.3 18.6 170 31-236 25-212 (239)
140 3qq5_A Small GTP-binding prote 99.5 3.3E-15 1.1E-19 170.0 2.9 158 32-236 31-194 (423)
141 1jny_A EF-1-alpha, elongation 99.5 3.9E-14 1.3E-18 161.7 11.4 159 34-228 5-203 (435)
142 2qtf_A Protein HFLX, GTP-bindi 99.5 2.8E-13 9.7E-18 151.4 18.0 165 36-238 180-354 (364)
143 3geh_A MNME, tRNA modification 99.5 1.9E-14 6.7E-19 165.5 7.5 153 34-236 223-382 (462)
144 3j2k_7 ERF3, eukaryotic polype 99.5 4.7E-13 1.6E-17 153.1 18.6 160 32-230 14-217 (439)
145 2xtp_A GTPase IMAP family memb 99.5 2.8E-13 9.5E-18 142.9 14.6 167 32-237 19-207 (260)
146 2c78_A Elongation factor TU-A; 99.5 3E-13 1E-17 152.8 15.2 159 33-236 9-210 (405)
147 1zun_B Sulfate adenylate trans 99.5 5.9E-13 2E-17 151.9 16.7 151 34-228 23-214 (434)
148 3t5d_A Septin-7; GTP-binding p 99.5 3.7E-13 1.3E-17 143.9 13.8 165 33-236 6-202 (274)
149 1s0u_A EIF-2-gamma, translatio 99.4 7.4E-13 2.5E-17 149.8 16.8 161 34-236 7-196 (408)
150 1ega_A Protein (GTP-binding pr 99.4 6.9E-13 2.3E-17 144.3 15.7 158 34-236 7-173 (301)
151 3tr5_A RF-3, peptide chain rel 99.4 5.8E-13 2E-17 155.7 15.4 112 34-188 12-147 (528)
152 3p26_A Elongation factor 1 alp 99.4 6.7E-13 2.3E-17 153.5 14.8 155 34-227 32-227 (483)
153 3cb4_D GTP-binding protein LEP 99.4 1.2E-12 4.1E-17 155.0 16.9 155 35-236 4-180 (599)
154 1d2e_A Elongation factor TU (E 99.4 5E-13 1.7E-17 150.8 13.1 157 35-236 3-193 (397)
155 3lxw_A GTPase IMAP family memb 99.4 2.3E-12 7.9E-17 136.0 17.4 168 31-236 17-206 (247)
156 1kk1_A EIF2gamma; initiation o 99.4 2.3E-12 8E-17 145.7 17.7 162 34-236 9-198 (410)
157 2ywe_A GTP-binding protein LEP 99.4 1.7E-12 5.7E-17 153.6 17.0 156 34-236 5-182 (600)
158 1pui_A ENGB, probable GTP-bind 99.4 2.2E-12 7.4E-17 130.5 15.4 158 33-236 24-197 (210)
159 3izy_P Translation initiation 99.4 2.7E-14 9.3E-19 166.8 0.2 157 34-236 3-166 (537)
160 2elf_A Protein translation elo 99.4 2E-12 6.9E-17 144.8 14.8 146 37-236 23-178 (370)
161 1r5b_A Eukaryotic peptide chai 99.4 4.7E-13 1.6E-17 154.3 9.3 157 33-228 41-242 (467)
162 3ohm_A Guanine nucleotide-bind 99.4 2.2E-12 7.7E-17 142.1 14.2 121 82-239 166-319 (327)
163 1f60_A Elongation factor EEF1A 99.4 1.2E-12 4.2E-17 150.4 12.4 152 34-228 6-202 (458)
164 3izq_1 HBS1P, elongation facto 99.4 1.6E-12 5.6E-17 154.4 13.2 156 33-228 165-362 (611)
165 2aka_B Dynamin-1; fusion prote 99.4 1.5E-12 5.2E-17 139.4 11.2 155 34-234 25-249 (299)
166 3avx_A Elongation factor TS, e 99.3 5.3E-12 1.8E-16 156.6 15.2 159 33-236 294-484 (1289)
167 1g7s_A Translation initiation 99.3 6.8E-12 2.3E-16 148.5 15.2 161 34-236 4-216 (594)
168 4fid_A G protein alpha subunit 99.3 7.2E-12 2.5E-16 138.6 14.2 121 83-238 161-328 (340)
169 2qag_A Septin-2, protein NEDD5 99.3 1E-12 3.6E-17 146.5 6.7 159 34-236 36-231 (361)
170 4a9a_A Ribosome-interacting GT 99.3 1.1E-11 3.9E-16 138.9 13.4 243 24-299 61-350 (376)
171 3mca_A HBS1, elongation factor 99.3 2.4E-12 8.3E-17 152.4 8.1 153 32-226 174-371 (592)
172 3def_A T7I23.11 protein; chlor 99.3 2.1E-11 7E-16 129.5 14.2 124 34-188 35-164 (262)
173 1zo1_I IF2, translation initia 99.3 3.6E-13 1.2E-17 156.2 -0.9 156 34-233 3-162 (501)
174 3t34_A Dynamin-related protein 99.3 7.1E-12 2.4E-16 139.2 9.0 107 84-233 137-256 (360)
175 1dar_A EF-G, elongation factor 99.2 4.5E-11 1.5E-15 144.0 15.3 111 33-189 10-143 (691)
176 2dy1_A Elongation factor G; tr 99.2 8.1E-11 2.8E-15 141.2 17.5 111 34-188 8-139 (665)
177 1udx_A The GTP-binding protein 99.2 1.2E-10 4E-15 132.4 17.3 160 36-238 158-325 (416)
178 2h5e_A Peptide chain release f 99.2 1.5E-10 5.2E-15 135.3 17.6 113 34-189 12-148 (529)
179 2j69_A Bacterial dynamin-like 99.2 1.4E-10 4.7E-15 139.9 16.0 165 34-237 68-324 (695)
180 2qnr_A Septin-2, protein NEDD5 99.2 3.1E-11 1.1E-15 131.3 9.3 165 33-237 16-213 (301)
181 1h65_A Chloroplast outer envel 99.2 1.8E-10 6.1E-15 122.7 14.9 122 34-188 38-167 (270)
182 1wxq_A GTP-binding protein; st 99.2 8.1E-11 2.8E-15 133.0 12.4 87 36-125 1-114 (397)
183 2xex_A Elongation factor G; GT 99.2 1.9E-10 6.4E-15 138.7 15.3 114 33-189 8-141 (693)
184 1jal_A YCHF protein; nucleotid 99.2 1.5E-10 5.1E-15 129.2 13.3 236 36-297 3-322 (363)
185 1jwy_B Dynamin A GTPase domain 99.1 1.8E-10 6.3E-15 124.4 13.3 27 34-60 23-49 (315)
186 1u0l_A Probable GTPase ENGC; p 99.1 1.3E-10 4.4E-15 126.4 11.9 131 50-233 32-168 (301)
187 2rdo_7 EF-G, elongation factor 99.1 4.7E-10 1.6E-14 135.4 17.9 116 33-188 8-147 (704)
188 3p32_A Probable GTPase RV1496/ 99.1 1.5E-10 5.2E-15 128.6 12.1 101 83-236 172-282 (355)
189 1cip_A Protein (guanine nucleo 99.1 2.2E-10 7.4E-15 127.6 11.0 117 82-238 192-344 (353)
190 2wsm_A Hydrogenase expression/ 99.1 4.1E-10 1.4E-14 115.0 12.2 151 35-237 30-213 (221)
191 2dby_A GTP-binding protein; GD 99.1 4.9E-10 1.7E-14 125.4 12.9 104 175-297 201-327 (368)
192 2x2e_A Dynamin-1; nitration, h 99.1 4.3E-11 1.5E-15 132.7 4.3 56 174-234 196-254 (353)
193 2qag_C Septin-7; cell cycle, c 99.0 3.7E-10 1.3E-14 128.3 10.7 163 32-235 28-224 (418)
194 1azs_C GS-alpha; complex (lyas 99.0 6.4E-10 2.2E-14 125.7 10.8 116 83-238 217-385 (402)
195 2hf9_A Probable hydrogenase ni 99.0 1.3E-09 4.3E-14 111.7 11.2 57 175-236 164-222 (226)
196 2www_A Methylmalonic aciduria 99.0 2.4E-09 8.3E-14 118.8 13.1 101 83-236 167-277 (349)
197 1n0u_A EF-2, elongation factor 99.0 3E-09 1E-13 130.8 14.2 115 34-188 18-163 (842)
198 1zcb_A G alpha I/13; GTP-bindi 98.9 1.4E-09 4.7E-14 121.6 10.0 122 82-238 200-353 (362)
199 2xtz_A Guanine nucleotide-bind 98.9 1.4E-09 4.7E-14 121.2 9.2 121 83-238 183-345 (354)
200 2p67_A LAO/AO transport system 98.9 2.7E-09 9.4E-14 117.9 9.8 104 83-236 149-259 (341)
201 2qpt_A EH domain-containing pr 98.9 1.2E-08 4.1E-13 119.9 13.8 115 33-188 63-231 (550)
202 4dkx_A RAS-related protein RAB 98.8 6.4E-09 2.2E-13 107.8 9.3 115 393-571 64-178 (216)
203 1yrb_A ATP(GTP)binding protein 98.8 2.8E-08 9.6E-13 104.1 12.5 117 84-236 110-255 (262)
204 2fu5_C RAS-related protein RAB 98.8 2.8E-08 9.5E-13 97.7 11.2 113 393-569 59-171 (183)
205 2hxs_A RAB-26, RAS-related pro 98.8 3.1E-08 1.1E-12 96.5 11.0 120 392-573 57-177 (178)
206 3q3j_B RHO-related GTP-binding 98.7 1.9E-08 6.6E-13 102.9 9.7 120 393-571 77-205 (214)
207 1ek0_A Protein (GTP-binding pr 98.7 1.8E-08 6.1E-13 96.9 8.7 116 392-568 53-168 (170)
208 1z08_A RAS-related protein RAB 98.7 8.6E-08 3E-12 92.5 13.3 112 393-568 57-168 (170)
209 3reg_A RHO-like small GTPase; 98.7 4.2E-08 1.4E-12 97.8 10.8 116 393-570 73-189 (194)
210 2qm8_A GTPase/ATPase; G protei 98.7 5.9E-08 2E-12 107.2 12.8 102 83-236 148-259 (337)
211 3zvr_A Dynamin-1; hydrolase, D 98.7 2.4E-08 8.3E-13 120.7 10.5 107 84-234 151-274 (772)
212 2efe_B Small GTP-binding prote 98.7 2.9E-08 1E-12 97.0 9.2 116 392-571 62-177 (181)
213 1r2q_A RAS-related protein RAB 98.7 7.8E-08 2.7E-12 92.4 11.9 113 392-568 56-168 (170)
214 1z0f_A RAB14, member RAS oncog 98.7 2.2E-08 7.5E-13 97.3 8.0 113 392-568 65-177 (179)
215 3tw8_B RAS-related protein RAB 98.7 9.2E-08 3.1E-12 93.1 12.4 113 392-569 59-171 (181)
216 3t5g_A GTP-binding protein RHE 98.7 5.1E-08 1.8E-12 95.6 10.6 116 393-571 56-171 (181)
217 2g6b_A RAS-related protein RAB 98.7 8E-08 2.7E-12 93.8 11.7 113 393-569 62-174 (180)
218 2fg5_A RAB-22B, RAS-related pr 98.7 4.2E-08 1.4E-12 97.9 9.7 114 392-569 73-186 (192)
219 2gf9_A RAS-related protein RAB 98.7 4.8E-08 1.6E-12 97.0 9.9 113 392-568 72-184 (189)
220 2p5s_A RAS and EF-hand domain 98.7 1.4E-08 4.7E-13 102.1 5.6 117 393-568 79-196 (199)
221 2a5j_A RAS-related protein RAB 98.7 3.1E-08 1.1E-12 98.7 7.9 114 392-569 71-184 (191)
222 3bc1_A RAS-related protein RAB 98.7 4.7E-08 1.6E-12 96.1 8.9 115 392-569 71-185 (195)
223 3tkl_A RAS-related protein RAB 98.7 1.2E-07 4E-12 94.1 11.7 114 392-569 66-179 (196)
224 2bme_A RAB4A, RAS-related prot 98.6 5.9E-08 2E-12 95.4 9.2 114 392-569 60-173 (186)
225 3kkq_A RAS-related protein M-R 98.6 5.9E-08 2E-12 95.3 9.2 113 393-568 68-181 (183)
226 1g16_A RAS-related protein SEC 98.6 3.4E-08 1.2E-12 95.2 7.1 111 393-568 54-164 (170)
227 4bas_A ADP-ribosylation factor 98.6 2.1E-07 7.2E-12 92.4 13.0 124 392-569 64-189 (199)
228 2y8e_A RAB-protein 6, GH09086P 98.6 1.8E-07 6E-12 90.9 12.1 114 392-569 64-177 (179)
229 2ohf_A Protein OLA1, GTP-bindi 98.6 8.5E-08 2.9E-12 108.1 11.2 239 34-297 21-348 (396)
230 2ew1_A RAS-related protein RAB 98.6 7.1E-08 2.4E-12 98.0 9.5 113 393-569 77-189 (201)
231 3q72_A GTP-binding protein RAD 98.6 1.4E-07 4.9E-12 90.7 11.2 113 392-567 50-162 (166)
232 3oes_A GTPase rhebl1; small GT 98.6 2.1E-07 7.1E-12 93.5 12.8 116 393-571 74-189 (201)
233 2a9k_A RAS-related protein RAL 98.6 1.4E-07 4.9E-12 92.2 11.2 115 392-569 67-181 (187)
234 1z0j_A RAB-22, RAS-related pro 98.6 9.4E-08 3.2E-12 92.0 9.7 112 393-568 57-168 (170)
235 3dz8_A RAS-related protein RAB 98.6 1.7E-08 5.8E-13 100.6 4.5 113 393-569 74-186 (191)
236 3c5c_A RAS-like protein 12; GD 98.6 1.3E-07 4.4E-12 94.3 10.7 114 393-568 71-185 (187)
237 1kao_A RAP2A; GTP-binding prot 98.6 1E-07 3.4E-12 91.2 9.3 112 393-567 53-164 (167)
238 2bcg_Y Protein YP2, GTP-bindin 98.6 2.4E-07 8.1E-12 93.2 12.4 114 392-569 58-171 (206)
239 2hup_A RAS-related protein RAB 98.6 1E-07 3.5E-12 96.2 9.7 114 392-569 79-193 (201)
240 3vqt_A RF-3, peptide chain rel 98.6 4E-07 1.4E-11 106.9 16.0 111 34-188 30-165 (548)
241 2oil_A CATX-8, RAS-related pro 98.6 6.6E-08 2.3E-12 96.1 8.0 113 393-569 76-188 (193)
242 2atx_A Small GTP binding prote 98.6 1.1E-07 3.8E-12 94.6 9.5 117 392-568 67-192 (194)
243 1zbd_A Rabphilin-3A; G protein 98.6 7.6E-08 2.6E-12 96.5 8.3 114 392-569 58-171 (203)
244 3cpj_B GTP-binding protein YPT 98.6 1.9E-07 6.5E-12 95.6 11.2 114 392-569 63-176 (223)
245 1z2a_A RAS-related protein RAB 98.6 1.6E-07 5.6E-12 90.1 10.0 112 392-568 55-166 (168)
246 1u8z_A RAS-related protein RAL 98.6 2.4E-07 8.2E-12 88.6 11.0 113 393-568 54-166 (168)
247 2fn4_A P23, RAS-related protei 98.6 3.4E-07 1.2E-11 89.0 12.1 115 392-569 58-172 (181)
248 2yc2_C IFT27, small RAB-relate 98.6 7.6E-08 2.6E-12 96.2 7.4 118 392-569 74-192 (208)
249 2o52_A RAS-related protein RAB 98.6 7E-08 2.4E-12 97.2 7.0 114 392-569 75-188 (200)
250 4djt_A GTP-binding nuclear pro 98.6 1.7E-07 5.7E-12 95.2 9.7 117 393-573 63-179 (218)
251 1x3s_A RAS-related protein RAB 98.5 6.4E-08 2.2E-12 95.7 6.3 114 393-570 66-179 (195)
252 1mh1_A RAC1; GTP-binding, GTPa 98.5 5.3E-07 1.8E-11 88.2 12.8 118 393-572 55-183 (186)
253 2il1_A RAB12; G-protein, GDP, 98.5 9.5E-08 3.2E-12 95.5 7.5 112 393-568 77-189 (192)
254 2bov_A RAla, RAS-related prote 98.5 2.1E-07 7.3E-12 92.9 10.1 115 392-569 63-177 (206)
255 3q85_A GTP-binding protein REM 98.5 1.3E-07 4.4E-12 91.3 8.1 113 393-567 53-165 (169)
256 1z06_A RAS-related protein RAB 98.5 9.9E-08 3.4E-12 94.7 7.4 114 392-568 70-187 (189)
257 2ce2_X GTPase HRAS; signaling 98.5 2.4E-07 8.2E-12 88.3 9.6 111 393-567 53-163 (166)
258 3con_A GTPase NRAS; structural 98.5 3.2E-07 1.1E-11 90.8 10.8 113 393-569 71-183 (190)
259 3bwd_D RAC-like GTP-binding pr 98.5 3E-07 1E-11 89.9 10.3 116 393-568 58-180 (182)
260 3cph_A RAS-related protein SEC 98.5 1.1E-07 3.6E-12 95.8 7.3 112 393-569 71-182 (213)
261 2yv5_A YJEQ protein; hydrolase 98.5 2.3E-07 7.9E-12 100.8 10.5 98 93-234 66-165 (302)
262 1ky3_A GTP-binding protein YPT 98.5 2.3E-07 7.9E-12 90.3 9.4 117 393-568 60-177 (182)
263 2gco_A H9, RHO-related GTP-bin 98.5 1.9E-07 6.5E-12 94.0 9.0 117 392-569 74-200 (201)
264 2j0v_A RAC-like GTP-binding pr 98.5 2.7E-07 9.1E-12 93.2 10.1 121 392-571 58-182 (212)
265 2q3h_A RAS homolog gene family 98.5 1.6E-07 5.6E-12 93.9 8.4 117 392-568 69-194 (201)
266 1wms_A RAB-9, RAB9, RAS-relate 98.5 3.2E-07 1.1E-11 89.2 10.0 116 392-569 57-174 (177)
267 3t1o_A Gliding protein MGLA; G 98.5 1.6E-07 5.6E-12 92.6 7.6 116 393-569 76-192 (198)
268 3clv_A RAB5 protein, putative; 98.5 2.1E-07 7.1E-12 91.9 8.3 111 392-569 94-204 (208)
269 3gj0_A GTP-binding nuclear pro 98.5 2.3E-07 7.9E-12 94.6 8.8 114 392-572 65-178 (221)
270 4dsu_A GTPase KRAS, isoform 2B 98.5 6.7E-07 2.3E-11 87.7 11.6 113 393-569 54-166 (189)
271 2atv_A RERG, RAS-like estrogen 98.5 2.4E-07 8.1E-12 92.6 8.4 112 393-568 78-190 (196)
272 3llu_A RAS-related GTP-binding 98.5 6.4E-07 2.2E-11 89.7 11.5 117 392-567 70-195 (196)
273 1m7b_A RND3/RHOE small GTP-bin 98.5 9.6E-07 3.3E-11 87.2 12.7 117 393-568 57-182 (184)
274 2j1l_A RHO-related GTP-binding 98.5 2.3E-07 7.7E-12 94.6 8.3 115 393-569 84-209 (214)
275 1c1y_A RAS-related protein RAP 98.5 7.4E-07 2.5E-11 85.4 11.4 112 393-567 53-165 (167)
276 2erx_A GTP-binding protein DI- 98.5 4.7E-07 1.6E-11 87.1 10.0 113 393-567 53-165 (172)
277 2nzj_A GTP-binding protein REM 98.5 4.7E-07 1.6E-11 87.7 10.1 113 393-568 54-168 (175)
278 1vg8_A RAS-related protein RAB 98.5 3.8E-07 1.3E-11 91.3 9.7 118 392-570 58-176 (207)
279 1gwn_A RHO-related GTP-binding 98.5 3.6E-07 1.2E-11 92.9 9.6 116 393-568 78-203 (205)
280 2f7s_A C25KG, RAS-related prot 98.4 7.9E-08 2.7E-12 97.5 4.0 115 392-569 85-199 (217)
281 4gzl_A RAS-related C3 botulinu 98.4 1E-06 3.6E-11 89.0 11.7 115 393-567 80-203 (204)
282 2fv8_A H6, RHO-related GTP-bin 98.4 6.7E-07 2.3E-11 90.4 10.2 118 392-571 74-202 (207)
283 3l0i_B RAS-related protein RAB 98.4 4.4E-08 1.5E-12 98.4 1.1 112 393-568 84-195 (199)
284 2iwr_A Centaurin gamma 1; ANK 98.4 5.2E-07 1.8E-11 88.1 8.5 113 393-569 56-169 (178)
285 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 2.7E-06 9.2E-11 95.9 14.8 105 174-297 223-350 (392)
286 2zej_A Dardarin, leucine-rich 98.4 4.7E-07 1.6E-11 89.8 7.5 119 392-571 57-180 (184)
287 1zj6_A ADP-ribosylation factor 98.4 6.7E-07 2.3E-11 88.5 8.7 122 391-573 60-182 (187)
288 3ihw_A Centg3; RAS, centaurin, 98.4 4.9E-07 1.7E-11 90.0 7.6 110 393-568 69-179 (184)
289 3j25_A Tetracycline resistance 98.4 3.4E-07 1.2E-11 109.4 7.4 109 36-188 3-132 (638)
290 1upt_A ARL1, ADP-ribosylation 98.4 1.1E-06 3.9E-11 84.6 9.8 117 391-568 51-168 (171)
291 1r8s_A ADP-ribosylation factor 98.4 5.6E-07 1.9E-11 86.3 7.4 117 391-568 44-161 (164)
292 2h17_A ADP-ribosylation factor 98.3 9.5E-07 3.3E-11 87.0 8.7 115 391-566 65-180 (181)
293 2h57_A ADP-ribosylation factor 98.3 1.5E-06 5.2E-11 86.1 10.1 119 391-568 67-186 (190)
294 2gf0_A GTP-binding protein DI- 98.3 6E-07 2.1E-11 89.1 7.0 114 393-569 58-171 (199)
295 4fn5_A EF-G 1, elongation fact 98.3 9.3E-06 3.2E-10 98.1 18.3 115 33-188 11-150 (709)
296 3cbq_A GTP-binding protein REM 98.3 2E-06 6.9E-11 86.5 10.5 114 393-569 74-188 (195)
297 1zd9_A ADP-ribosylation factor 98.3 9.4E-07 3.2E-11 87.8 6.7 116 392-568 68-184 (188)
298 2wkq_A NPH1-1, RAS-related C3 98.2 2.1E-06 7E-11 92.5 9.4 118 393-569 205-330 (332)
299 2x77_A ADP-ribosylation factor 98.2 2E-06 6.8E-11 85.1 8.5 117 391-568 66-183 (189)
300 2b6h_A ADP-ribosylation factor 98.2 1.1E-06 3.9E-11 87.8 6.7 116 392-568 74-190 (192)
301 1ksh_A ARF-like protein 2; sma 98.2 1.8E-06 6.3E-11 84.9 7.9 117 391-568 62-179 (186)
302 3r7w_A Gtpase1, GTP-binding pr 98.2 9.3E-06 3.2E-10 88.2 13.4 116 392-568 53-180 (307)
303 1m2o_B GTP-binding protein SAR 98.2 2.7E-06 9.2E-11 84.9 8.5 114 392-566 68-189 (190)
304 3th5_A RAS-related C3 botulinu 97.5 2E-07 6.7E-12 93.8 0.0 115 393-567 80-203 (204)
305 1f6b_A SAR1; gtpases, N-termin 98.2 6.6E-06 2.3E-10 82.7 11.3 115 392-567 70-197 (198)
306 3c5h_A Glucocorticoid receptor 98.2 9.9E-06 3.4E-10 85.4 12.4 88 421-567 163-253 (255)
307 2g3y_A GTP-binding protein GEM 98.1 4.9E-06 1.7E-10 85.6 8.3 110 394-568 90-202 (211)
308 1moz_A ARL1, ADP-ribosylation 98.1 4E-06 1.4E-10 81.9 6.9 117 391-568 62-179 (183)
309 3ec1_A YQEH GTPase; atnos1, at 98.0 1.9E-06 6.5E-11 96.3 4.3 145 35-225 162-318 (369)
310 1fzq_A ADP-ribosylation factor 98.0 5.4E-06 1.8E-10 82.0 6.8 116 392-568 61-177 (181)
311 1tq4_A IIGP1, interferon-induc 98.0 3.8E-05 1.3E-09 87.1 13.6 154 37-236 71-251 (413)
312 3h2y_A GTPase family protein; 98.0 2.2E-06 7.5E-11 95.8 3.3 140 35-220 160-312 (368)
313 2cjw_A GTP-binding protein GEM 98.0 1.7E-05 5.9E-10 79.4 9.1 90 422-568 82-171 (192)
314 1u0l_A Probable GTPase ENGC; p 97.9 3.4E-05 1.1E-09 83.6 11.2 106 392-567 64-171 (301)
315 3h2y_A GTPase family protein; 97.9 1.5E-05 5.1E-10 89.0 8.7 101 92-236 55-158 (368)
316 2lkc_A Translation initiation 97.9 1E-05 3.5E-10 78.5 6.1 62 506-568 107-170 (178)
317 1nrj_B SR-beta, signal recogni 97.9 1.2E-05 4E-10 81.4 6.8 114 392-556 56-171 (218)
318 2fh5_B SR-beta, signal recogni 97.9 2.1E-05 7.2E-10 79.3 8.4 119 392-566 55-213 (214)
319 2qu8_A Putative nucleolar GTP- 97.9 1.6E-05 5.5E-10 81.6 7.4 62 506-569 142-205 (228)
320 1zcb_A G alpha I/13; GTP-bindi 97.9 2.1E-05 7E-10 87.8 8.4 118 393-569 203-353 (362)
321 2xtz_A Guanine nucleotide-bind 97.8 7.3E-05 2.5E-09 83.1 12.3 25 32-56 6-30 (354)
322 2j37_W Signal recognition part 97.8 9.2E-05 3.1E-09 86.0 13.5 23 34-56 100-122 (504)
323 1svi_A GTP-binding protein YSX 97.8 4.3E-05 1.5E-09 75.5 8.7 59 506-567 134-193 (195)
324 1cip_A Protein (guanine nucleo 97.8 3.2E-05 1.1E-09 86.0 8.3 124 392-569 194-344 (353)
325 3ec1_A YQEH GTPase; atnos1, at 97.8 4E-05 1.4E-09 85.5 9.0 100 92-236 57-160 (369)
326 2f9l_A RAB11B, member RAS onco 97.8 8.9E-05 3E-09 74.2 10.7 113 393-569 56-168 (199)
327 2wji_A Ferrous iron transport 97.8 3E-05 1E-09 75.2 6.7 56 506-567 108-163 (165)
328 2dyk_A GTP-binding protein; GT 97.7 2.6E-05 8.7E-10 74.2 5.8 51 507-567 109-160 (161)
329 2cxx_A Probable GTP-binding pr 97.7 3.2E-05 1.1E-09 75.8 6.5 56 506-569 122-184 (190)
330 3o47_A ADP-ribosylation factor 97.7 2.3E-05 7.9E-10 86.0 5.9 117 392-569 210-327 (329)
331 3pqc_A Probable GTP-binding pr 97.7 0.00011 3.8E-09 72.0 9.9 60 506-568 133-193 (195)
332 3dpu_A RAB family protein; roc 97.7 4.1E-05 1.4E-09 89.3 7.4 113 392-572 99-211 (535)
333 3ohm_A Guanine nucleotide-bind 97.7 5E-05 1.7E-09 83.6 7.2 123 393-571 169-320 (327)
334 3lvq_E ARF-GAP with SH3 domain 97.6 8.8E-05 3E-09 85.4 8.9 117 392-569 367-484 (497)
335 2qag_B Septin-6, protein NEDD5 97.6 0.00024 8.3E-09 80.8 12.1 44 175-221 176-219 (427)
336 1azs_C GS-alpha; complex (lyas 97.6 0.00014 4.8E-09 82.2 10.1 117 393-568 219-384 (402)
337 3r7w_B Gtpase2, GTP-binding pr 97.6 5.5E-05 1.9E-09 83.3 6.3 118 393-569 48-174 (331)
338 1oix_A RAS-related protein RAB 97.6 0.00035 1.2E-08 69.6 11.5 111 393-568 80-191 (191)
339 4dhe_A Probable GTP-binding pr 97.5 0.00026 8.9E-09 71.6 9.8 61 506-569 144-211 (223)
340 3l82_B F-box only protein 4; T 97.5 0.00017 5.9E-09 74.6 8.1 110 90-236 109-221 (227)
341 3sop_A Neuronal-specific septi 97.5 0.00089 3E-08 71.5 13.8 23 35-57 2-24 (270)
342 2wjg_A FEOB, ferrous iron tran 97.5 0.00013 4.5E-09 71.5 6.6 59 506-570 112-170 (188)
343 4fid_A G protein alpha subunit 97.4 8E-05 2.7E-09 82.4 4.9 27 543-569 302-328 (340)
344 2yv5_A YJEQ protein; hydrolase 97.4 0.00035 1.2E-08 75.8 9.7 87 423-569 82-169 (302)
345 3a1s_A Iron(II) transport prot 97.4 0.00023 7.9E-09 75.3 7.1 56 506-567 110-165 (258)
346 3l2o_B F-box only protein 4; s 97.3 0.00043 1.5E-08 74.9 8.8 110 90-236 194-306 (312)
347 3b1v_A Ferrous iron uptake tra 97.3 0.00034 1.1E-08 74.9 7.0 56 506-567 107-162 (272)
348 3iev_A GTP-binding protein ERA 97.2 0.00088 3E-08 72.6 10.2 60 506-570 122-183 (308)
349 3cnl_A YLQF, putative uncharac 97.2 0.00011 3.7E-09 78.3 2.7 56 36-95 100-156 (262)
350 1puj_A YLQF, conserved hypothe 97.2 0.00023 8E-09 76.5 5.1 55 34-94 119-176 (282)
351 1puj_A YLQF, conserved hypothe 97.2 0.00045 1.5E-08 74.3 7.3 99 87-236 3-104 (282)
352 1jny_A EF-1-alpha, elongation 97.2 0.00048 1.6E-08 78.4 7.9 110 392-557 85-201 (435)
353 2gj8_A MNME, tRNA modification 97.1 0.0001 3.6E-09 72.2 1.4 50 506-567 115-164 (172)
354 2c78_A Elongation factor TU-A; 97.1 0.0019 6.5E-08 72.6 11.1 61 506-568 127-211 (405)
355 3i8s_A Ferrous iron transport 97.0 0.00073 2.5E-08 72.0 6.7 58 506-569 112-169 (274)
356 3sjy_A Translation initiation 97.0 0.0022 7.4E-08 72.1 10.5 58 508-568 131-191 (403)
357 2e87_A Hypothetical protein PH 97.0 0.0028 9.5E-08 70.0 11.2 57 506-569 280-336 (357)
358 3iby_A Ferrous iron transport 97.0 0.00077 2.6E-08 71.3 6.4 55 506-566 110-164 (256)
359 3qq5_A Small GTP-binding prote 96.9 0.00076 2.6E-08 76.7 6.4 79 506-592 140-221 (423)
360 1zun_B Sulfate adenylate trans 96.9 0.0016 5.3E-08 74.1 8.9 50 508-558 159-213 (434)
361 1d2e_A Elongation factor TU (E 96.9 0.0032 1.1E-07 70.7 10.7 61 506-568 118-194 (397)
362 3dm5_A SRP54, signal recogniti 96.8 0.016 5.3E-07 66.3 15.5 143 35-228 100-281 (443)
363 2ged_A SR-beta, signal recogni 96.6 0.0064 2.2E-07 59.7 9.6 56 392-450 92-148 (193)
364 3k53_A Ferrous iron transport 96.6 0.0028 9.5E-08 67.0 7.2 57 507-569 110-166 (271)
365 2v3c_C SRP54, signal recogniti 96.6 0.011 3.8E-07 67.3 12.4 23 35-57 99-121 (432)
366 1wb1_A Translation elongation 96.6 0.0036 1.2E-07 72.3 8.3 60 506-568 125-188 (482)
367 2elf_A Protein translation elo 96.4 0.011 3.6E-07 66.1 10.6 58 506-567 111-178 (370)
368 3cnl_A YLQF, putative uncharac 96.3 0.0082 2.8E-07 63.7 8.4 76 112-233 21-96 (262)
369 1f5n_A Interferon-induced guan 96.3 0.0068 2.3E-07 71.6 8.4 60 34-95 37-103 (592)
370 3j2k_7 ERF3, eukaryotic polype 96.3 0.0077 2.6E-07 68.6 8.6 56 505-560 153-216 (439)
371 1lnz_A SPO0B-associated GTP-bi 96.2 0.0053 1.8E-07 67.8 6.8 89 422-570 238-331 (342)
372 1f60_A Elongation factor EEF1A 96.2 0.017 5.7E-07 66.2 10.9 52 506-558 144-201 (458)
373 1g7s_A Translation initiation 96.1 0.038 1.3E-06 65.4 14.0 62 506-567 122-216 (594)
374 1j8m_F SRP54, signal recogniti 96.1 0.016 5.6E-07 62.6 10.0 143 35-228 98-281 (297)
375 1t9h_A YLOQ, probable GTPase E 96.1 0.0031 1.1E-07 68.7 4.3 85 111-230 85-169 (307)
376 3cb4_D GTP-binding protein LEP 96.1 0.01 3.5E-07 70.4 9.0 108 392-569 72-182 (599)
377 3kl4_A SRP54, signal recogniti 96.1 0.021 7.3E-07 65.0 11.0 23 35-57 97-119 (433)
378 1s0u_A EIF-2-gamma, translatio 96.1 0.01 3.4E-07 66.8 8.3 57 508-568 137-197 (408)
379 3gee_A MNME, tRNA modification 96.1 0.015 5E-07 67.1 9.8 113 393-568 283-397 (476)
380 2qtf_A Protein HFLX, GTP-bindi 96.0 0.019 6.5E-07 63.9 9.7 63 506-572 292-357 (364)
381 1kk1_A EIF2gamma; initiation o 95.9 0.025 8.4E-07 63.6 10.6 58 508-568 139-199 (410)
382 2ywe_A GTP-binding protein LEP 95.9 0.013 4.5E-07 69.4 8.6 108 392-569 74-184 (600)
383 1wf3_A GTP-binding protein; GT 95.9 0.029 9.8E-07 60.7 10.4 57 506-569 117-173 (301)
384 3avx_A Elongation factor TS, e 95.9 0.019 6.7E-07 72.3 10.1 61 506-568 411-485 (1289)
385 3p26_A Elongation factor 1 alp 95.6 0.027 9.2E-07 64.8 9.5 49 508-557 173-226 (483)
386 1r5b_A Eukaryotic peptide chai 95.6 0.013 4.6E-07 67.1 6.8 55 505-559 179-242 (467)
387 3izq_1 HBS1P, elongation facto 95.6 0.024 8.1E-07 67.4 8.9 53 506-559 304-362 (611)
388 2rcn_A Probable GTPase ENGC; Y 95.5 0.055 1.9E-06 60.2 11.0 53 175-231 160-212 (358)
389 3tr5_A RF-3, peptide chain rel 95.3 0.038 1.3E-06 64.5 9.4 25 544-568 252-276 (528)
390 3szr_A Interferon-induced GTP- 95.3 0.051 1.7E-06 64.5 10.4 22 37-58 47-68 (608)
391 3geh_A MNME, tRNA modification 95.2 0.016 5.4E-07 66.6 5.5 54 507-569 331-384 (462)
392 1xzp_A Probable tRNA modificat 94.9 0.056 1.9E-06 62.4 9.2 55 507-569 351-405 (482)
393 3c8u_A Fructokinase; YP_612366 94.9 0.019 6.6E-07 58.0 4.6 43 1-57 2-44 (208)
394 3lxx_A GTPase IMAP family memb 94.7 0.097 3.3E-06 53.7 9.4 59 507-567 146-212 (239)
395 3izy_P Translation initiation 94.6 0.009 3.1E-07 69.9 1.5 62 506-568 104-167 (537)
396 2xtp_A GTPase IMAP family memb 94.5 0.19 6.5E-06 52.1 11.3 60 507-569 139-208 (260)
397 2aka_B Dynamin-1; fusion prote 94.4 0.012 4E-07 62.4 1.7 57 506-565 192-249 (299)
398 1yrb_A ATP(GTP)binding protein 93.9 0.19 6.5E-06 51.9 9.6 60 506-568 171-256 (262)
399 1ye8_A Protein THEP1, hypothet 93.7 0.033 1.1E-06 55.5 3.3 23 36-58 1-23 (178)
400 1bif_A 6-phosphofructo-2-kinas 93.6 0.025 8.4E-07 64.8 2.5 102 34-141 38-147 (469)
401 1udx_A The GTP-binding protein 93.4 0.24 8.3E-06 56.0 10.2 91 422-571 237-327 (416)
402 2xxa_A Signal recognition part 93.2 1.2 4.2E-05 50.5 15.7 22 35-56 100-121 (433)
403 1zo1_I IF2, translation initia 93.2 0.018 6.2E-07 66.8 0.5 61 506-567 103-165 (501)
404 1kgd_A CASK, peripheral plasma 93.0 0.045 1.5E-06 54.0 3.0 23 36-58 6-28 (180)
405 2hf9_A Probable hydrogenase ni 92.9 0.068 2.3E-06 53.9 4.1 60 506-568 164-223 (226)
406 2qnr_A Septin-2, protein NEDD5 92.8 0.11 3.9E-06 55.9 6.0 60 506-569 155-214 (301)
407 2wsm_A Hydrogenase expression/ 92.7 0.067 2.3E-06 53.7 3.9 60 507-569 155-214 (221)
408 3lxw_A GTPase IMAP family memb 92.7 0.35 1.2E-05 50.2 9.4 60 506-568 139-207 (247)
409 1lvg_A Guanylate kinase, GMP k 92.6 0.054 1.9E-06 54.5 3.0 22 36-57 5-26 (198)
410 2j69_A Bacterial dynamin-like 92.5 0.11 3.8E-06 62.5 6.1 64 506-569 230-325 (695)
411 1zp6_A Hypothetical protein AT 92.5 0.062 2.1E-06 52.8 3.2 23 36-58 10-32 (191)
412 1wxq_A GTP-binding protein; st 92.3 0.61 2.1E-05 52.4 11.4 47 505-558 213-259 (397)
413 3t5d_A Septin-7; GTP-binding p 92.3 0.1 3.6E-06 55.0 4.9 59 506-567 144-202 (274)
414 3mca_A HBS1, elongation factor 92.3 0.098 3.3E-06 61.9 5.1 61 505-566 313-394 (592)
415 3q5d_A Atlastin-1; G protein, 92.3 0.44 1.5E-05 54.4 10.3 23 35-57 67-89 (447)
416 2bbw_A Adenylate kinase 4, AK4 92.2 0.076 2.6E-06 54.9 3.6 23 35-57 27-49 (246)
417 3tr0_A Guanylate kinase, GMP k 92.2 0.065 2.2E-06 53.2 3.0 22 37-58 9-30 (205)
418 2qag_A Septin-2, protein NEDD5 92.0 0.075 2.6E-06 58.9 3.4 58 506-567 174-231 (361)
419 1rz3_A Hypothetical protein rb 91.9 0.17 5.7E-06 50.8 5.6 44 1-57 1-44 (201)
420 1znw_A Guanylate kinase, GMP k 91.9 0.075 2.6E-06 53.6 2.9 22 37-58 22-43 (207)
421 3a00_A Guanylate kinase, GMP k 91.8 0.075 2.6E-06 52.6 2.9 20 38-57 4-23 (186)
422 2qag_C Septin-7; cell cycle, c 91.5 0.13 4.3E-06 58.4 4.6 56 506-564 167-222 (418)
423 2dy1_A Elongation factor G; tr 91.5 0.47 1.6E-05 56.8 9.8 26 543-568 248-273 (665)
424 3ney_A 55 kDa erythrocyte memb 91.5 0.11 3.7E-06 53.0 3.6 25 34-58 18-42 (197)
425 1z6g_A Guanylate kinase; struc 91.4 0.088 3E-06 53.8 2.9 22 37-58 25-46 (218)
426 1s96_A Guanylate kinase, GMP k 91.3 0.093 3.2E-06 54.1 3.0 23 36-58 17-39 (219)
427 4gp7_A Metallophosphoesterase; 91.1 0.098 3.4E-06 51.2 2.8 21 37-57 11-31 (171)
428 1jbk_A CLPB protein; beta barr 91.0 0.2 7E-06 47.9 5.0 22 36-57 44-65 (195)
429 1kag_A SKI, shikimate kinase I 90.9 0.11 3.9E-06 50.0 3.0 22 36-57 5-26 (173)
430 3tau_A Guanylate kinase, GMP k 90.9 0.11 3.8E-06 52.5 3.0 23 36-58 9-31 (208)
431 3kb2_A SPBC2 prophage-derived 90.7 0.13 4.3E-06 49.3 3.2 21 37-57 3-23 (173)
432 2j41_A Guanylate kinase; GMP, 90.7 0.13 4.6E-06 50.8 3.4 23 36-58 7-29 (207)
433 1knq_A Gluconate kinase; ALFA/ 90.6 0.16 5.5E-06 49.2 3.8 23 35-57 8-30 (175)
434 2bdt_A BH3686; alpha-beta prot 90.4 0.13 4.4E-06 50.7 2.9 21 37-57 4-24 (189)
435 1ly1_A Polynucleotide kinase; 90.4 0.13 4.6E-06 49.5 3.0 22 36-57 3-24 (181)
436 2qor_A Guanylate kinase; phosp 90.3 0.13 4.5E-06 51.5 3.0 23 36-58 13-35 (204)
437 3lw7_A Adenylate kinase relate 90.3 0.14 4.8E-06 48.7 3.0 19 37-55 3-21 (179)
438 1pui_A ENGB, probable GTP-bind 90.3 0.48 1.6E-05 46.8 7.0 60 506-568 137-198 (210)
439 3tif_A Uncharacterized ABC tra 90.2 0.13 4.5E-06 53.4 3.0 22 37-58 33-54 (235)
440 1ex7_A Guanylate kinase; subst 90.2 0.15 5.1E-06 51.4 3.2 57 38-94 4-77 (186)
441 1kht_A Adenylate kinase; phosp 90.1 0.16 5.5E-06 49.4 3.3 22 36-57 4-25 (192)
442 4eun_A Thermoresistant glucoki 90.0 0.15 5E-06 51.0 3.0 22 36-57 30-51 (200)
443 1nks_A Adenylate kinase; therm 90.0 0.16 5.6E-06 49.4 3.3 22 36-57 2-23 (194)
444 3asz_A Uridine kinase; cytidin 90.0 0.17 5.6E-06 50.7 3.4 22 36-57 7-28 (211)
445 1ega_A Protein (GTP-binding pr 90.0 0.59 2E-05 50.1 8.0 59 506-569 116-175 (301)
446 2jaq_A Deoxyguanosine kinase; 89.9 0.16 5.6E-06 50.0 3.3 21 37-57 2-22 (205)
447 2pcj_A ABC transporter, lipopr 89.9 0.15 5E-06 52.6 2.9 22 37-58 32-53 (224)
448 1htw_A HI0065; nucleotide-bind 89.9 0.15 5.3E-06 49.8 2.9 22 37-58 35-56 (158)
449 2h5e_A Peptide chain release f 89.7 0.35 1.2E-05 56.4 6.2 24 544-567 253-276 (529)
450 2if2_A Dephospho-COA kinase; a 89.6 0.17 6E-06 50.2 3.2 22 36-57 2-23 (204)
451 3fb4_A Adenylate kinase; psych 89.6 0.17 6E-06 50.7 3.2 22 36-57 1-22 (216)
452 2onk_A Molybdate/tungstate ABC 89.5 0.18 6E-06 52.8 3.2 22 37-58 26-47 (240)
453 3ec2_A DNA replication protein 89.5 0.14 4.8E-06 50.1 2.3 22 36-57 39-60 (180)
454 4a74_A DNA repair and recombin 89.4 0.16 5.6E-06 50.9 2.9 22 36-57 26-47 (231)
455 2plr_A DTMP kinase, probable t 89.4 0.21 7.2E-06 49.5 3.6 23 35-57 4-26 (213)
456 2i3b_A HCR-ntpase, human cance 89.4 0.16 5.4E-06 51.2 2.6 22 37-58 3-24 (189)
457 3dl0_A Adenylate kinase; phosp 89.4 0.19 6.4E-06 50.6 3.2 22 36-57 1-22 (216)
458 2cdn_A Adenylate kinase; phosp 89.3 0.22 7.6E-06 49.5 3.7 26 32-57 17-42 (201)
459 2rhm_A Putative kinase; P-loop 89.3 0.24 8.2E-06 48.4 3.9 23 35-57 5-27 (193)
460 2cbz_A Multidrug resistance-as 89.3 0.17 5.9E-06 52.6 3.0 22 37-58 33-54 (237)
461 1sgw_A Putative ABC transporte 89.3 0.18 6.1E-06 51.9 3.0 22 37-58 37-58 (214)
462 3t61_A Gluconokinase; PSI-biol 89.2 0.18 6.1E-06 50.3 2.9 22 36-57 19-40 (202)
463 1b0u_A Histidine permease; ABC 89.2 0.18 6E-06 53.4 3.0 22 37-58 34-55 (262)
464 1cke_A CK, MSSA, protein (cyti 89.1 0.2 7E-06 50.4 3.3 22 36-57 6-27 (227)
465 1tev_A UMP-CMP kinase; ploop, 89.1 0.22 7.5E-06 48.5 3.4 23 35-57 3-25 (196)
466 1g6h_A High-affinity branched- 89.0 0.18 6.2E-06 53.0 3.0 22 37-58 35-56 (257)
467 1mv5_A LMRA, multidrug resista 89.0 0.25 8.6E-06 51.4 4.0 23 36-58 29-51 (243)
468 2ehv_A Hypothetical protein PH 89.0 0.2 6.9E-06 51.0 3.2 22 36-57 31-52 (251)
469 2p65_A Hypothetical protein PF 88.9 0.28 9.7E-06 46.9 4.1 22 36-57 44-65 (187)
470 3vaa_A Shikimate kinase, SK; s 88.9 0.22 7.6E-06 49.6 3.4 23 35-57 25-47 (199)
471 1qhx_A CPT, protein (chloramph 88.9 0.24 8.1E-06 48.0 3.5 23 36-58 4-26 (178)
472 3gfo_A Cobalt import ATP-bindi 88.9 0.19 6.5E-06 53.7 3.0 22 37-58 36-57 (275)
473 3cm0_A Adenylate kinase; ATP-b 88.8 0.25 8.5E-06 48.2 3.6 23 35-57 4-26 (186)
474 2ff7_A Alpha-hemolysin translo 88.8 0.21 7.1E-06 52.4 3.2 22 37-58 37-58 (247)
475 2rdo_7 EF-G, elongation factor 88.8 0.78 2.7E-05 55.3 8.6 26 543-568 262-287 (704)
476 2pze_A Cystic fibrosis transme 88.8 0.2 6.8E-06 51.8 3.0 22 37-58 36-57 (229)
477 1np6_A Molybdopterin-guanine d 88.7 0.21 7.1E-06 49.7 3.0 23 36-58 7-29 (174)
478 1ji0_A ABC transporter; ATP bi 88.7 0.2 6.8E-06 52.2 3.0 22 37-58 34-55 (240)
479 2d2e_A SUFC protein; ABC-ATPas 88.7 0.21 7.3E-06 52.3 3.2 22 37-58 31-52 (250)
480 4g1u_C Hemin import ATP-bindin 88.7 0.2 6.9E-06 53.1 3.0 22 37-58 39-60 (266)
481 2olj_A Amino acid ABC transpor 88.6 0.21 7.1E-06 53.0 3.0 22 37-58 52-73 (263)
482 1t9h_A YLOQ, probable GTPase E 88.5 0.37 1.3E-05 52.3 5.0 54 506-563 117-171 (307)
483 2zu0_C Probable ATP-dependent 88.5 0.22 7.7E-06 52.7 3.2 22 37-58 48-69 (267)
484 2qi9_C Vitamin B12 import ATP- 88.5 0.21 7.3E-06 52.4 3.0 22 37-58 28-49 (249)
485 2v54_A DTMP kinase, thymidylat 88.4 0.27 9.3E-06 48.5 3.6 24 35-58 4-27 (204)
486 1vpl_A ABC transporter, ATP-bi 88.4 0.22 7.4E-06 52.6 3.0 22 37-58 43-64 (256)
487 3uie_A Adenylyl-sulfate kinase 88.4 0.22 7.6E-06 49.7 2.9 22 36-57 26-47 (200)
488 3lnc_A Guanylate kinase, GMP k 88.3 0.16 5.3E-06 51.9 1.8 23 36-58 28-51 (231)
489 2eyu_A Twitching motility prot 88.3 0.22 7.6E-06 52.6 3.0 21 37-57 27-47 (261)
490 3p32_A Probable GTPase RV1496/ 88.3 0.52 1.8E-05 51.8 6.1 59 507-568 218-283 (355)
491 1y63_A LMAJ004144AAA protein; 88.2 0.29 1E-05 48.2 3.7 23 35-57 10-32 (184)
492 2ixe_A Antigen peptide transpo 88.2 0.22 7.6E-06 52.9 3.0 22 37-58 47-68 (271)
493 2ghi_A Transport protein; mult 88.2 0.24 8.2E-06 52.3 3.2 22 37-58 48-69 (260)
494 2v9p_A Replication protein E1; 88.2 0.23 8E-06 53.9 3.1 22 36-57 127-148 (305)
495 1jjv_A Dephospho-COA kinase; P 88.2 0.28 9.5E-06 48.9 3.5 22 36-57 3-24 (206)
496 2wwf_A Thymidilate kinase, put 88.1 0.31 1E-05 48.5 3.8 23 35-57 10-32 (212)
497 3b85_A Phosphate starvation-in 88.0 0.18 6.1E-06 51.6 2.0 22 37-58 24-45 (208)
498 2ihy_A ABC transporter, ATP-bi 88.0 0.25 8.7E-06 52.7 3.2 22 37-58 49-70 (279)
499 1e4v_A Adenylate kinase; trans 87.9 0.26 9E-06 49.6 3.2 22 36-57 1-22 (214)
500 2nq2_C Hypothetical ABC transp 87.9 0.24 8.2E-06 52.1 3.0 22 37-58 33-54 (253)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.94 E-value=2.3e-26 Score=239.33 Aligned_cols=166 Identities=18% Similarity=0.251 Sum_probs=129.4
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
...+++||+|||++|||||||++||+++. ..+.||++.+|...... ......+++||||+|+++|..+...| +
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~-~~~~~v~l~iwDtaGqe~~~~l~~~~----~ 83 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRTIRLQLWDTAGLERFRSLIPSY----I 83 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEE-CSSCEEEEEEECCSCTTTCGGGHHHH----H
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEE-ecceEEEEEEEECCCchhhhhHHHHH----h
Confidence 34578999999999999999999999864 57789999887543332 22233489999999999999999988 3
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ +++++|+|||++++++| +++..|+..+.+.... ++|++|||||+|+.
T Consensus 84 ~--~a~~~ilv~di~~~~Sf-~~i~~~~~~i~~~~~~-----------------------------~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 84 R--DSAAAVVVYDITNVNSF-QQTTKWIDDVRTERGS-----------------------------DVIIMLVGNKTDLA 131 (216)
T ss_dssp T--TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-----------------------------SSEEEEEEECTTCG
T ss_pred c--cccEEEEEeecchhHHH-HHHHHHHHHHHHhcCC-----------------------------CCeEEEEeeccchH
Confidence 3 59999999999999999 9999999988765432 68999999999985
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
++|.+..++++++|.++|+.|++|||++|.||+++++.|...+..
T Consensus 132 -----~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 132 -----DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp -----GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred -----hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 478888999999999999999999999999999999999887743
No 2
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=2e-22 Score=197.98 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=133.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|+++. ..+.+|++.++..............+++||+||++.+..+...+ ++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~----~~- 78 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY----IY- 78 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHH----HT-
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHH----Hh-
Confidence 457999999999999999999999864 34568888876543333222123489999999999988887777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc-EEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+..|+..+.+..... .+.| +++|+||+|+..
T Consensus 79 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~---------------------------~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 79 -GAQGVLLVYDITNYQSF-ENLEDWYTVVKKVSEES---------------------------ETQPLVALVGNKIDLEH 129 (178)
T ss_dssp -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHHHH---------------------------TCCCEEEEEEECGGGGG
T ss_pred -hCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhccc---------------------------CCCCeEEEEEEcccccc
Confidence 59999999999999997 88889998887654320 1345 899999999952
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
.+.+..++++.++..+++++++|||+++.|++++++.|...++..
T Consensus 130 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 130 -----MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp -----GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred -----ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 455566788899999999999999999999999999999888553
No 3
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.88 E-value=1.4e-21 Score=190.20 Aligned_cols=163 Identities=17% Similarity=0.286 Sum_probs=125.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++.+..+...+ ++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~----~~- 77 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIY----YR- 77 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCS----ST-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHH----hc-
Confidence 357899999999999999999999864 356688887765333322 2223389999999998887777666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|+|++++.++ +.+..|+..+.+.... ++|+++|+||+|+..
T Consensus 78 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-----------------------------~~piilv~nK~Dl~~- 125 (170)
T 1z08_A 78 -DSNGAILVYDITDEDSF-QKVKNWVKELRKMLGN-----------------------------EICLCIVGNKIDLEK- 125 (170)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHGG-----------------------------GSEEEEEEECGGGGG-
T ss_pred -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC-----------------------------CCeEEEEEECccccc-
Confidence 59999999999999998 8888998877665432 589999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+.+..+++++++..+|+.++++||+++.|++++++.|...+.
T Consensus 126 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 126 ----ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp ----GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 4455567888999999999999999999999999999988764
No 4
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.88 E-value=7.8e-22 Score=197.98 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=126.5
Q ss_pred cCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649 30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFS 107 (890)
Q Consensus 30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~ 107 (890)
......+||+|+|++|||||||+++|+++. ..+.+|++.+|.. ..........++|||++|++++..+. .+
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~-~~---- 88 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSS--EETVDHQPVHLRVMDTADLDTPRNCE-RY---- 88 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE--EEEETTEEEEEEEEECCC---CCCTH-HH----
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeE--EEEECCEEEEEEEEECCCCCcchhHH-HH----
Confidence 345667999999999999999999999864 4667888876532 22112223489999999998877653 34
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
++ +++++|+|||++++.++ +.+..|+..+.+.... ...++|++||+||+|+
T Consensus 89 ~~--~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilv~nK~Dl 139 (187)
T 3c5c_A 89 LN--WAHAFLVVYSVDSRQSF-DSSSSYLELLALHAKE--------------------------TQRSIPALLLGNKLDM 139 (187)
T ss_dssp HT--TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHHH--------------------------HCCCCCEEEEEECGGG
T ss_pred Hh--hCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhhc--------------------------cCCCCCEEEEEECcch
Confidence 12 49999999999999998 8888999888765432 0126899999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEec-cCCCCHHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSS-LDPGLVKRTRDILNHYA 236 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSA-K~~~nId~Lk~~I~~~l 236 (890)
. +.+.+..+++++++..+|+.+++||| +++.|++++++.|...+
T Consensus 140 ~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 140 A-----QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp G-----GGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred h-----hcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 5 24566778899999999999999999 89999999999998775
No 5
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=1e-21 Score=190.45 Aligned_cols=164 Identities=17% Similarity=0.288 Sum_probs=129.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++|+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++++..+...+ ++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~----~~-- 74 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXY----YR-- 74 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHH----HT--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhh----hc--
Confidence 36899999999999999999999864 356688887764333322 1123389999999999888887776 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|+|++++.++ +.+..|+..+.+... .++|+++|+||+|+..+.
T Consensus 75 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 75 NAQAALVVYDVTKPQSF-IKARHWVKELHEQAS-----------------------------KDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-----------------------------TTCEEEEEEECGGGGGSS
T ss_pred cCcEEEEEEecCChHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECCCccccc
Confidence 49999999999999998 788888877665321 268999999999996321
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.+.+..+..++++..+++.+++|||+++.|++++++.|.+.+
T Consensus 125 --~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 125 --GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp --CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred --cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1255667788899999999999999999999999999887654
No 6
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=1.4e-21 Score=189.60 Aligned_cols=162 Identities=17% Similarity=0.254 Sum_probs=128.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++++..+...+ ++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~----~~- 77 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMY----YR- 77 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHH----HT-
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHhhhhhHHh----cc-
Confidence 457899999999999999999999863 345678887754333222 1123489999999999988887777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|+|++++.++ +.+..|+..+.+.. ..++|+++|+||+|+..
T Consensus 78 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilv~nK~Dl~~- 125 (170)
T 1r2q_A 78 -GAQAAIVVYDITNEESF-ARAKNWVKELQRQA-----------------------------SPNIVIALSGNKADLAN- 125 (170)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGG-
T ss_pred -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccCcc-
Confidence 49999999999999998 78888887665532 12689999999999852
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+....++++.++..+++++++|||++|.|++++++.|...+
T Consensus 126 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 126 ----KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp ----GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred ----ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 344556778889999999999999999999999999988765
No 7
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.87 E-value=1.4e-21 Score=192.52 Aligned_cols=164 Identities=18% Similarity=0.285 Sum_probs=130.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|++.. ..+.++++.++....... ......+++||+||++++..+...+ ++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~ 83 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMY----YR 83 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGGGGGTHHH----HT
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCChhhhhhhHHH----hc
Confidence 4567899999999999999999999863 345678887765433322 1123489999999999888877776 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|+|++++.++ +.+..|+..+.+... .++|+++|+||+|+..
T Consensus 84 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 84 --GAAAAIIVFDVTNQASF-ERAKKWVQELQAQGN-----------------------------PNMVMALAGNKSDLLD 131 (181)
T ss_dssp --TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-----------------------------TTCEEEEEEECTTCTT
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECCcccc
Confidence 49999999999999998 788888887765321 2689999999999952
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+....++++.++..++++++++||+++.|++++++.|...+.
T Consensus 132 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 132 -----ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp -----TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred -----cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455567888999999999999999999999999999988763
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.4e-21 Score=199.70 Aligned_cols=164 Identities=20% Similarity=0.229 Sum_probs=132.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.+|++.+|........ .....+++||+||++++..+...+ ++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~----~~- 97 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-GEKVKLQIWDTAGQERFRSITQSY----YR- 97 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHGGG----ST-
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHH----Hh-
Confidence 456899999999999999999999863 3567888888654333221 122489999999999988887777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+..... .++|+++|+||+|+..
T Consensus 98 -~~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~NK~Dl~~- 145 (201)
T 2ew1_A 98 -SANALILTYDITCEESF-RCLPEWLREIEQYAS-----------------------------NKVITVLVGNKIDLAE- 145 (201)
T ss_dssp -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECGGGGG-
T ss_pred -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECCCCcc-
Confidence 59999999999999998 788899887765321 2689999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+..++++.++...++.+++|||++|.|++++++.|...+..
T Consensus 146 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 146 ----RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp ----GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45556677888999999999999999999999999999888753
No 9
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.87 E-value=1.8e-21 Score=189.11 Aligned_cols=162 Identities=14% Similarity=0.234 Sum_probs=129.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||.+++..+...+ ++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~----~~- 77 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMY----YR- 77 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHH----HT-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCchhhhcccHhh----Cc-
Confidence 457899999999999999999999864 456788887754333222 1223489999999998888777766 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|+|++++.++ +.+..|++.+.... ...+|+++|+||+|+..
T Consensus 78 -~~~~~i~v~d~~~~~s~-~~~~~~~~~l~~~~-----------------------------~~~~~iilv~nK~Dl~~- 125 (170)
T 1z0j_A 78 -GSAAAIIVYDITKEETF-STLKNWVRELRQHG-----------------------------PPSIVVAIAGNKCDLTD- 125 (170)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTSEEEEEEECTTCGG-
T ss_pred -CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCcEEEEEECCcccc-
Confidence 49999999999999998 78888888776532 12589999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.++...+.++.++..++++++++||+++.|++++++.|...+
T Consensus 126 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 126 ----VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp ----GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 345566778899999999999999999999999999998775
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=199.60 Aligned_cols=165 Identities=18% Similarity=0.217 Sum_probs=126.6
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+++. ..+.+|++.+|........ .....++|||+||++++..+...+ ++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~----~~ 100 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSY----YR 100 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCGGGHHHHHHH----HT
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHH----Hh
Confidence 4456899999999999999999999864 3567888887654333321 122489999999999998888777 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+..|+..+.+.. ..++|++||+||+|+..
T Consensus 101 --~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 101 --SANGAILAYDITKRSSF-LSVPHWIEDVRKYA-----------------------------GSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp --TCSEEEEEEETTBHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCGG
T ss_pred --hCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECCcccc
Confidence 59999999999999998 78888988776532 12689999999999952
Q ss_pred CCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+..+++++++..+++ .+++|||+++.|++++++.|...+..
T Consensus 149 -----~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 149 -----LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp -----GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -----ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 455667788999999999 99999999999999999999888753
No 11
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.87 E-value=1.8e-21 Score=190.75 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=130.7
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....++|+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++++..+...+ ++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~ 86 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSY----YR 86 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHH----HH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHH----hc
Confidence 3457999999999999999999999864 355678887754322222 1123489999999999988887777 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|+|++++.++ +.+..|+..+.... ..++|+++|+||+|+..
T Consensus 87 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 87 --GAAGALMVYDITRRSTY-NHLSSWLTDARNLT-----------------------------NPNTVIILIGNKADLEA 134 (179)
T ss_dssp --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCGG
T ss_pred --cCCEEEEEEeCcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccccc
Confidence 49999999999999988 78888888766532 12689999999999952
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+....+++++++..+++.+++|||+++.|++++++.|.+.+.
T Consensus 135 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 135 -----QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp -----GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred -----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 4555667888999999999999999999999999999988763
No 12
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.5e-21 Score=192.19 Aligned_cols=164 Identities=18% Similarity=0.237 Sum_probs=124.8
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
....++|+|+|++|||||||+++|+++. ..+.+|++.+|....... ......+++||+||++++..+...+ +
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~----~ 81 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAY----Y 81 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CC----G
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHH----c
Confidence 3567899999999999999999999864 356788888865433222 1222379999999999887777666 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|+|++++.++ +.+..|+..+.+... .++|+++|+||+|+.
T Consensus 82 ~--~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 82 R--DAHALLLLYDVTNKASF-DNIQAWLTEIHEYAQ-----------------------------HDVALMLLGNKVDSA 129 (180)
T ss_dssp G--GCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECCSTT
T ss_pred c--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCcEEEEEECcccC
Confidence 2 59999999999999987 788888887765321 268999999999996
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
. .+.+..++++.++..+++++++|||+++.|++++++.|.+.+.
T Consensus 130 ~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 130 H-----ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp S-----CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred c-----ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3 3445566788899999999999999999999999999988874
No 13
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.87 E-value=2.2e-21 Score=192.13 Aligned_cols=164 Identities=18% Similarity=0.256 Sum_probs=131.6
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+++. ..+.++++..|. ...........+++||+||++.+..+...+ ++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~ 88 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL--KHTEIDNQWAILDVLDTAGQEEFSAMREQY----MR 88 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCSCGGGCSSHHHH----HH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeE--EEEEeCCcEEEEEEEECCCchhhHHHHHHH----Hh
Confidence 4568999999999999999999999863 466678876652 222222223378899999999888887777 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+..|+..+.+... ..++|+++|+||+|+..
T Consensus 89 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 89 --TGDGFLIVYSVTDKASF-EHVDRFHQLILRVKD----------------------------RESFPMILVANKVDLMH 137 (183)
T ss_dssp --HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT----------------------------SSCCCEEEEEECTTCST
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEECCCchh
Confidence 49999999999999998 888889887765432 23689999999999852
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEecc-CCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSL-DPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK-~~~nId~Lk~~I~~~lf 237 (890)
.+.+..+++++++..+++++++|||+ ++.|++++++.|.+.+.
T Consensus 138 -----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 138 -----LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp -----TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred -----ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 55667788999999999999999999 99999999999988763
No 14
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=2.8e-21 Score=187.18 Aligned_cols=161 Identities=19% Similarity=0.276 Sum_probs=127.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
+.+||+|+|++|||||||+++|+++. ..+.+|++..+. ...........+++||+||++.+..+...+ ++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~-- 73 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--KQVEVDCQQCMLEILDTAGTEQFTAMRDLY----MK-- 73 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE--EEEESSSCEEEEEEEEECSSCSSTTHHHHH----HH--
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE--EEEEECCEEEEEEEEECCChHHHHHHHHHH----hc--
Confidence 46899999999999999999999863 456677775543 222222223489999999999988888777 11
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++++|||++++.++ +.+..|++.+.+... ..++|+++|+||+|+..
T Consensus 74 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~-- 122 (167)
T 1c1y_A 74 NGQGFALVYSITAQSTF-NDLQDLREQILRVKD----------------------------TEDVPMILVGNKCDLED-- 122 (167)
T ss_dssp HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHC----------------------------CSCCCEEEEEECTTCGG--
T ss_pred cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC----------------------------cCCCcEEEEEECccccc--
Confidence 49999999999999998 778888877665431 23689999999999952
Q ss_pred CcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+....++++.++..+ ++++++|||++|.|++++++.|...+
T Consensus 123 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 123 ---ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp ---GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 4455567788889888 78999999999999999999998765
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.87 E-value=2.4e-21 Score=195.60 Aligned_cols=164 Identities=18% Similarity=0.277 Sum_probs=131.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|++.. ..+.++++.++....... ......+++||+||++++..+...+ ++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~- 79 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAY----YR- 79 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTT----GG-
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHh----hc-
Confidence 356899999999999999999999865 456688887765333322 1223489999999999988887777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+.... ..++|+++|+||+|+..
T Consensus 80 -~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~nK~Dl~~- 127 (203)
T 1zbd_A 80 -GAMGFILMYDITNEESF-NAVQDWSTQIKTYS-----------------------------WDNAQVLLVGNKCDMED- 127 (203)
T ss_dssp -GCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CSSCEEEEEEECTTCTT-
T ss_pred -CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECcccCc-
Confidence 59999999999999998 78888888765532 12589999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+..+.+++++..+|+++++|||+++.|++++++.|...+..
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 128 ----ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp ----SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34555678889999999999999999999999999999887753
No 16
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.87 E-value=3.5e-22 Score=197.83 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=105.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++|+|+|++|||||||+++|+++. ..+.+|++.+|....... ......+++||+||++++..+...+ ++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-- 79 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAY----YR-- 79 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTT----TT--
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHH----Hh--
Confidence 46899999999999999999999864 356688887765433322 1122489999999998887776666 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|||++++.++ +.+..|+..+.+... .++|++||+||+|+..
T Consensus 80 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~~-- 127 (183)
T 2fu5_C 80 GAMGIMLVYDITNEKSF-DNIRNWIRNIEEHAS-----------------------------ADVEKMILGNKCDVND-- 127 (183)
T ss_dssp TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-----------------------------TTCEEEEEEEC--CCS--
T ss_pred cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECccCCc--
Confidence 59999999999999998 788889887765321 2689999999999952
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+..+++++++..+++++++|||+++.|++++++.|...+..
T Consensus 128 ---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 128 ---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp ---CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred ---cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34555677889999999999999999999999999999888753
No 17
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=1.7e-21 Score=191.43 Aligned_cols=169 Identities=17% Similarity=0.284 Sum_probs=120.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|++.. ..+.++++.++..............+.+||+||++.+..+...+ ++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~- 80 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF----YR- 80 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CC----ST-
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH----hh-
Confidence 347899999999999999999999864 45678888776543333221223489999999998888777666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+...... ....++|+++|+||+|+..
T Consensus 81 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~ilv~nK~Dl~~- 132 (182)
T 1ky3_A 81 -GADCCVLVYDVTNASSF-ENIKSWRDEFLVHANV-------------------------NSPETFPFVILGNKIDAEE- 132 (182)
T ss_dssp -TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------------SCTTTCCEEEEEECTTSCG-
T ss_pred -cCCEEEEEEECCChHHH-HHHHHHHHHHHHHhcc-------------------------cCcCCCcEEEEEECCcccc-
Confidence 59999999999999998 8888898877665421 1224689999999999852
Q ss_pred CCcchhhhhHHHHHHHHH-HcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 191 LEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~-~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+.+.+..++++.++. ..++++++|||++|.|++++++.|...+.
T Consensus 133 ---~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 133 ---SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp ---GGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ---ccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 234455677888888 56789999999999999999999988764
No 18
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.87 E-value=2.9e-21 Score=191.48 Aligned_cols=166 Identities=15% Similarity=0.263 Sum_probs=131.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEecccc---------ceEEEEEEcCCCcchhhHHh
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVM---------KDICHLWELGSGTSRLEVAS 101 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~---------k~~l~IwDlpG~~~~~~Li~ 101 (890)
...++|+|+|++|||||||+++|+++. ..+.+|++.+|........... ...+++||+||++++..+..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 457899999999999999999999853 4567888887641122211111 34899999999999888877
Q ss_pred hhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEE
Q psy11649 102 LFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILI 181 (890)
Q Consensus 102 ~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVV 181 (890)
.+ ++ ++|++|+|+|++++.++ +.+..|+..+..... ..++|+++|
T Consensus 89 ~~----~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv 133 (195)
T 3bc1_A 89 AF----FR--DAMGFLLLFDLTNEQSF-LNVRNWISQLQMHAY----------------------------SENPDIVLC 133 (195)
T ss_dssp HT----TT--TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSS----------------------------SSSCCEEEE
T ss_pred HH----Hc--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEE
Confidence 77 22 59999999999999998 778888887665321 136899999
Q ss_pred eecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 182 GGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 182 gNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+||+|+.. .+....+.+++++..+|+++++|||+++.|++++++.|...+..
T Consensus 134 ~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 134 GNKSDLED-----QRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECTTCGG-----GCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EECccccc-----ccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999952 44556678889999999999999999999999999999888753
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=191.36 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=130.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|+++. ..+.++++.++........ .....+.+||+||++.+..+...+ ++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 80 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-GEKVKLQIWDTAGQERFRTITSTY----YR- 80 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEET-TEEEEEEEEEETTGGGCSSCCGGG----GT-
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEEC-CEEEEEEEEcCCCchhhhhhHHHH----hc-
Confidence 457899999999999999999999863 4667888877654333321 122479999999998887776666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|+|++++.++ +.+..|+..+.+... ++|+++|+||+|+.
T Consensus 81 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~p~ilv~nK~Dl~-- 126 (181)
T 3tw8_B 81 -GTHGVIVVYDVTSAESF-VNVKRWLHEINQNCD------------------------------DVCRILVGNKNDDP-- 126 (181)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHCT------------------------------TSEEEEEEECTTCG--
T ss_pred -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC------------------------------CCCEEEEEECCCCc--
Confidence 59999999999999998 788888887765321 48999999999985
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+.+.......+.++..+++++++|||++|.|++++++.|...+..
T Consensus 127 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 127 ---ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp ---GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 245556678889999999999999999999999999999888754
No 20
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.87 E-value=2.6e-21 Score=186.72 Aligned_cols=161 Identities=19% Similarity=0.285 Sum_probs=126.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
+.++|+|+|++|||||||+++|+++. ..+.++++..+. ...........+.+||+||++.+..+...+ ++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~-- 73 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR--KEIEVDSSPSVLEILDTAGTEQFASMRDLY----IK-- 73 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTCCHHHHHHH----HH--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEE--EEEEECCEEEEEEEEECCCchhhHHHHHHH----hc--
Confidence 46899999999999999999999864 355567664432 222112222379999999999988888777 11
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++++|+|++++.++ +.+..|+..+.+... ..++|+++|+||+|+..
T Consensus 74 ~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~-- 122 (167)
T 1kao_A 74 NGQGFILVYSLVNQQSF-QDIKPMRDQIIRVKR----------------------------YEKVPVILVGNKVDLES-- 122 (167)
T ss_dssp HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHTT----------------------------TSCCCEEEEEECGGGGG--
T ss_pred cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECCcccc--
Confidence 48999999999999998 788888876655432 13689999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+....++.+.++..+|+++++|||+++.|++++++.|...+
T Consensus 123 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 123 ---EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ---GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ---cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 455566778889999999999999999999999999998765
No 21
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.87 E-value=2.5e-21 Score=194.39 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=131.6
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+++. ..+.+|++..|.. ..........+++|||||++.+..+...+ ++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~ 93 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH--VMKYKNEEFILHLWDTAGQEEYDRLRPLS----YA 93 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGTTTGGGG----CT
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE--EEEECCEEEEEEEEECCCcHHHHHHhHhh----cc
Confidence 4457999999999999999999999864 3667888876542 22222223378999999999988887777 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
++|++|+|||++++.++ +.+ ..|+..+..... ++|+++|+||+|+.
T Consensus 94 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------------------~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 94 --DSDVVLLCFAVNNRTSF-DNISTKWEPEIKHYID------------------------------TAKTVLVGLKVDLR 140 (194)
T ss_dssp --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT------------------------------TSEEEEEEECGGGC
T ss_pred --CCcEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------------------CCCEEEEEEChhhc
Confidence 59999999999999998 554 778877664321 48999999999996
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
. ...+.+..+++.+++..+|+. +++|||++|.|++++++.|.+.++.
T Consensus 141 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 141 K---DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp C---TTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred c---CCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 3 124667778899999999998 9999999999999999999988754
No 22
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.87 E-value=2.2e-21 Score=193.96 Aligned_cols=164 Identities=19% Similarity=0.281 Sum_probs=130.7
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+++. ..+.++++.+|....... ......+.+||+||++.+..+...+ ++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~ 93 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAY----YR 93 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGG----GT
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHh----cc
Confidence 3456899999999999999999999864 456688887765333222 1123489999999999887777666 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+..|+..+.+.. ..++|++||+||+|+..
T Consensus 94 --~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 94 --GAMGFLLMYDIANQESF-AAVQDWATQIKTYS-----------------------------WDNAQVILVGNKCDLED 141 (189)
T ss_dssp --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCGG
T ss_pred --CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECccccc
Confidence 59999999999999998 78888888776532 12589999999999952
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+....+++++++..+|+.+++|||+++.|++++++.|...+.
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 142 -----ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp -----GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455567889999999999999999999999999999988764
No 23
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=192.77 Aligned_cols=164 Identities=19% Similarity=0.261 Sum_probs=132.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.++++.++........ .....+.+||+||++.+..+...+ ++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 87 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSY----YR- 87 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGCTTHHHH----HT-
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEECCCcHhhhhhHHHH----Hh-
Confidence 356899999999999999999999864 4566888877654333321 122379999999999888887777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+..... .++|+++|+||+|+..
T Consensus 88 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~p~ilv~nK~Dl~~- 135 (196)
T 3tkl_A 88 -GAHGIIVVYDVTDQESF-NNVKQWLQEIDRYAS-----------------------------ENVNKLLVGNKCDLTT- 135 (196)
T ss_dssp -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECTTCTT-
T ss_pred -hCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECccccc-
Confidence 49999999999999998 788889887765432 2689999999999853
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+......++.++..+++++++|||+++.|++++++.|...+..
T Consensus 136 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 136 ----KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp ----TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 44555677899999999999999999999999999999888754
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.87 E-value=1.8e-21 Score=188.72 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=129.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..+||+|+|++|||||||+++|+++. ..+.+|++.++....... ......+.+||+||+..+..+...+ ++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-- 76 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAY----YR-- 76 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHH----HT--
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHH----hc--
Confidence 47899999999999999999999863 466788888865433322 1123389999999998887776666 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++++|+|++++.++ +.+..|+..+.... .++|+++|+||+|+..
T Consensus 77 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~~-- 123 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESF-EAISSWREKVVAEV------------------------------GDIPTALVQNKIDLLD-- 123 (168)
T ss_dssp TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHH------------------------------CSCCEEEEEECGGGGG--
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECcccCc--
Confidence 49999999999999988 78888888776543 1589999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+....++++.++..++++++++||+++.|++++++.|...++
T Consensus 124 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 124 ---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp ---GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred ---ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 3445567788999999999999999999999999999988764
No 25
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=1.9e-21 Score=199.99 Aligned_cols=170 Identities=18% Similarity=0.193 Sum_probs=131.7
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
.....+||+|+|++|||||||+++|+++. ..+.+|++.+|. ...........++|||++|++++..+...+ +
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~ 96 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT--ACLETEEQRVELSLWDTSGSPYYDNVRPLC----Y 96 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE--EEEEC--CEEEEEEEEECCSGGGTTTGGGG----C
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE--EEEEECCEEEEEEEEECCCCHhHHHHHHHH----c
Confidence 35568999999999999999999999864 466788887653 222222223489999999999988888777 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|||++++.++.+.+..|+..+.+.. .++|++|||||+|+.
T Consensus 97 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 97 S--DSDAVLLCFDISRPETVDSALKKWRTEILDYC------------------------------PSTRVLLIGCKTDLR 144 (214)
T ss_dssp T--TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC------------------------------TTSEEEEEEECGGGG
T ss_pred C--CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC------------------------------CCCCEEEEEEChhhc
Confidence 2 59999999999999998333789998876642 158999999999996
Q ss_pred CCCC-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCC-HHHHHHHHHHHHhc
Q psy11649 189 ENLE-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGL-VKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~n-Id~Lk~~I~~~lf~ 238 (890)
.+.. ...+.+..+++..++..+++ ++++|||+++.| ++++++.|...+..
T Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 145 TDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp GCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred cchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 3210 01256778889999999999 999999999998 99999999988754
No 26
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=4.6e-22 Score=199.56 Aligned_cols=166 Identities=16% Similarity=0.264 Sum_probs=134.2
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
.....+||+|+|++|||||||+++|+++. ..+.++++.++....... ......++|||+||++.+..+...+ +
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~ 93 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAY----Y 93 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHHHCHHHHHHH----H
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHH----H
Confidence 34567999999999999999999999854 456677777765433322 2233489999999999888888777 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|||++++.++ +.+..|+..+.... ..++|++||+||+|+.
T Consensus 94 ~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 94 R--GAMGFILMYDITNEESF-NAVQDWATQIKTYS-----------------------------WDNAQVILVGNKCDME 141 (191)
T ss_dssp T--TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCG
T ss_pred c--cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECCCCc
Confidence 2 59999999999999998 88888988776532 1268999999999985
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+.+....+.++.++..+|+++++|||+++.|++++++.|.+.+..
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 142 -----EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp -----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -----cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 355667788899999999999999999999999999999888743
No 27
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.87 E-value=3.9e-21 Score=190.44 Aligned_cols=164 Identities=19% Similarity=0.223 Sum_probs=130.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++.+..+...+ ++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~- 81 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSY----YR- 81 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTT----ST-
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHH----Hh-
Confidence 457899999999999999999999864 456678887754332222 1112389999999999988887777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+.... ..++|+++|+||+|+..
T Consensus 82 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~piilv~nK~Dl~~- 129 (186)
T 2bme_A 82 -GAAGALLVYDITSRETY-NALTNWLTDARMLA-----------------------------SQNIVIILCGNKKDLDA- 129 (186)
T ss_dssp -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGG-
T ss_pred -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccccc-
Confidence 59999999999999998 78888887765532 12689999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.....+++.++..+++++++|||+++.|++++++.|.+.+..
T Consensus 130 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 130 ----DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp ----GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 34555677889999999999999999999999999999888754
No 28
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.87 E-value=1.8e-21 Score=195.19 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=128.3
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
.....+||+|+|++|||||||+++|+++. ..+.++++.++....... ......++|||+||++++..+...+ +
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~ 91 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSY----Y 91 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHH----H
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHH----h
Confidence 34567999999999999999999999864 345678887765333322 1122489999999998887776666 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|+|++++.++ +.+..|+..+.... ..++|++||+||+|+.
T Consensus 92 ~--~~d~ii~v~d~~~~~s~-~~~~~~l~~i~~~~-----------------------------~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 92 R--GAAGALLVYDITRRETF-NHLTSWLEDARQHS-----------------------------SSNMVIMLIGNKSDLE 139 (191)
T ss_dssp T--TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCG
T ss_pred c--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECcccC
Confidence 2 59999999999999998 78888888776532 1268999999999995
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
. .+.+..++++.++..+++.+++|||+++.|++++++.|...+..
T Consensus 140 ~-----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 140 S-----RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp G-----GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred C-----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2 44556677889999999999999999999999999999887743
No 29
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=1.3e-21 Score=190.17 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=122.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
.++|+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++.+..+...+ ++ +
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~----~~--~ 75 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAY----YR--G 75 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHH----HT--T
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHH----hc--c
Confidence 5899999999999999999999864 456788887765433322 1123479999999998887766666 22 4
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|+|++++.++ +.+..|+..+.+... .++|+++|+||+|+.
T Consensus 76 ~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~---- 121 (170)
T 1g16_A 76 AMGIILVYDITDERTF-TNIKQWFKTVNEHAN-----------------------------DEAQLLLVGNKSDME---- 121 (170)
T ss_dssp EEEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECTTCT----
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECccCC----
Confidence 8999999999999987 788888887765321 268999999999983
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+....+.++.++..+|+++++|||+++.|++++++.|.+.+.
T Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 122 --TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp --TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred --cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445566788899999999999999999999999999988874
No 30
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=5.2e-21 Score=184.82 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=125.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++|+|+|++|||||||+++|+++. ..+.++++..+. ...........+.+||+||+.++..+...+ ++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~-- 74 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--KKVVLDGEEVQIDILDTAGQEDYAAIRDNY----FR-- 74 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCC---CHHHHHHH----HH--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE--EEEEECCEEEEEEEEECCCcchhHHHHHHH----hh--
Confidence 46899999999999999999999864 455677775543 211112222379999999999888888777 11
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++++|||++++.++ +.+..|+..+.+... ..++|+++|+||+|+..
T Consensus 75 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~-- 123 (168)
T 1u8z_A 75 SGEGFLCVFSITEMESF-AATADFREQILRVKE----------------------------DENVPFLLVGNKSDLED-- 123 (168)
T ss_dssp HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHC----------------------------CTTSCEEEEEECGGGGG--
T ss_pred cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEECccccc--
Confidence 49999999999999998 888888887766432 12589999999999952
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+....++++.++..++++++++||+++.|++++++.|...+
T Consensus 124 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 124 ---KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ---GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 344556788889999999999999999999999999998776
No 31
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=194.25 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=127.4
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
.....++|+|+|++|||||||+++|+++. ..+.++++.++........ .....+.+||++|++++..+...+ +
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~----~ 96 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAY----Y 96 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHHH----H
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcHHHHHHHHHH----h
Confidence 34567899999999999999999999864 3567888877654333321 122379999999999988887777 1
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|||++++.++ +.+..|++.+.... ..++|++||+||+|+.
T Consensus 97 ~--~~d~iilV~D~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 97 R--SAKGIILVYDITKKETF-DDLPKWMKMIDKYA-----------------------------SEDAELLLVGNKLDCE 144 (192)
T ss_dssp H--HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGG
T ss_pred c--CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECcccc
Confidence 2 49999999999999998 78888887765532 1268999999999985
Q ss_pred CCCCcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
. .+.+..+++++++..+ ++.+++|||++|.|++++++.|...+.
T Consensus 145 ~-----~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 145 T-----DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp G-----GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred c-----ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2 4555567788899885 889999999999999999999988764
No 32
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.86 E-value=3.7e-21 Score=189.64 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=124.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
...+||+|+|++|||||||+++|+++.. .+.||++..|. ...........+++||++|+++. .+ ++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~-----~~----~~-- 71 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK--KEMLVDGQTHLVLIREEAGAPDA-----KF----SG-- 71 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEE--EEEEETTEEEEEEEEECSSSCCH-----HH----HH--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEE--EEEEECCEEEEEEEEECCCCchh-----HH----HH--
Confidence 4579999999999999999999998632 36688885542 22222222347999999999762 23 11
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|||++++.++ +.+..|++.+.+.... ...++|++|||||+|+..
T Consensus 72 ~~d~~ilv~D~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilv~nK~Dl~~-- 122 (178)
T 2iwr_A 72 WADAVIFVFSLEDENSF-QAVSRLHGQLSSLRGE--------------------------GRGGLALALVGTQDRISA-- 122 (178)
T ss_dssp HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCS--------------------------SSCCCEEEEEEECTTCBT--
T ss_pred hCCEEEEEEECcCHHHH-HHHHHHHHHHHHHHhc--------------------------CCCCCCEEEEEECccccc--
Confidence 38999999999999998 8888888766654321 123689999999999842
Q ss_pred CcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
...+.+..+++++++..+ ++++++|||++|.|++++++.|...+..
T Consensus 123 -~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 123 -SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp -TBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred -cccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 124556677888898886 6899999999999999999999887754
No 33
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=195.48 Aligned_cols=165 Identities=17% Similarity=0.154 Sum_probs=126.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhcccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSL 108 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~ 108 (890)
....+||+|+|++|||||||+++|++. ...+.++++.++...... .......+.+||++|+..+.. +...+ +
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~~~~~~~~~----~ 94 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM-VDKEEVTLVVYDIWEQGDAGGWLRDHC----L 94 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEE-ETTEEEEEEEECCCCCSGGGHHHHHHH----H
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEE-ECCEEEEEEEEecCCCccchhhhHHHh----h
Confidence 445799999999999999999999863 334556777665432222 122234899999999987765 55555 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ +++++|+|||++++.+| +.+..|+..+..... ..++|+++||||+|+.
T Consensus 95 ~--~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 95 Q--TGDAFLIVFSVTDRRSF-SKVPETLLRLRAGRP----------------------------HHDLPVILVGNKSDLA 143 (195)
T ss_dssp H--HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHST----------------------------TSCCCEEEEEECTTCT
T ss_pred c--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEeechhcc
Confidence 2 48999999999999998 888889887655321 1268999999999995
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
. .+.+..++++.++..+++.+++|||+++.|++++++.|...+.
T Consensus 144 ~-----~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 144 R-----SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp T-----TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred c-----cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 2 4555667788999999999999999999999999999988764
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.86 E-value=2.2e-21 Score=191.77 Aligned_cols=164 Identities=19% Similarity=0.225 Sum_probs=129.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|+++ ...+.+|++..+. ...........+++||+||++.+..+...+ ++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~- 76 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT--KLITVNGQEYHLQLVDTAGQDEYSIFPQTY----SI- 76 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCCCTTCCCCGGG----TT-
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEE--EEEEECCEEEEEEEEeCCCchhhhHHHHHH----Hh-
Confidence 35789999999999999999999975 3466678876652 222222223478999999999887776666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+.+... ..++|+++|+||+|+.
T Consensus 77 -~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~ilv~nK~Dl~-- 124 (181)
T 3t5g_A 77 -DINGYILVYSVTSIKSF-EVIKVIHGKLLDMVG----------------------------KVQIPIMLVGNKKDLH-- 124 (181)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHC--------------------------------CCEEEEEECTTCT--
T ss_pred -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccch--
Confidence 59999999999999998 888888887765432 2358999999999985
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+.+.+..++++.++..++++++++||+++.|++++++.|...+..
T Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 125 ---MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp ---TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred ---hcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 256667788999999999999999999999999999999888754
No 35
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4e-21 Score=193.08 Aligned_cols=162 Identities=15% Similarity=0.263 Sum_probs=130.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++.+..+...+ ++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 94 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMY----YR- 94 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGGGGGTHHH----HT-
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhhHhhhHHh----hc-
Confidence 457899999999999999999999864 356788887754332222 2223489999999999888877776 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+.+.. ..++|+++|+||+|+..
T Consensus 95 -~~d~iilV~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piiiv~NK~Dl~~- 142 (192)
T 2fg5_A 95 -GSAAAVIVYDITKQDSF-YTLKKWVKELKEHG-----------------------------PENIVMAIAGNKCDLSD- 142 (192)
T ss_dssp -TCSEEEEEEETTCTHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGG-
T ss_pred -cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCcEEEEEECccccc-
Confidence 49999999999999998 88888988776532 12689999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.+..+++++++..+++++++|||+++.|++++++.|...+
T Consensus 143 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 143 ----IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp ----GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ----ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 355566788999999999999999999999999999998875
No 36
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=2e-21 Score=188.68 Aligned_cols=161 Identities=20% Similarity=0.176 Sum_probs=110.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
.+||+|+|++|||||||+++|++... ...++.+..+. ...........+.+||++|++.+..+...+ ++ ++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~--~~ 73 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD--RSIVVDGEEASLMVYDIWEQDGGRWLPGHC----MA--MG 73 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE--EEEEETTEEEEEEEEECC---------------------C
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE--EEEEECCEEEEEEEEECCCCccchhhhhhh----hh--hC
Confidence 57999999999999999999998543 33355554432 222222233489999999999888887777 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
+++++|||++++.++ +.+..|+..+.+.. ...++|+++|+||+|+..
T Consensus 74 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~p~ilv~nK~Dl~~---- 120 (166)
T 3q72_A 74 DAYVIVYSVTDKGSF-EKASELRVQLRRAR----------------------------QTDDVPIILVGNKSDLVR---- 120 (166)
T ss_dssp CEEEEEEETTCHHHH-HHHHHHHHHHHHCC-------------------------------CCCEEEEEECTTCCS----
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEEecccccc----
Confidence 999999999999998 88888887665421 123689999999999963
Q ss_pred chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+....+..+.++..+++++++|||++|.|++++++.|.+.+.
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 121 -SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp -SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999988763
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.86 E-value=6.4e-21 Score=187.10 Aligned_cols=165 Identities=15% Similarity=0.231 Sum_probs=130.1
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
.+..++|+|+|++|||||||+++|+++. ..+.+|++..|. ...........+++||+||++.+..+...+ ++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~----~~ 79 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT--KICSVDGIPARLDILDTAGQEEFGAMREQY----MR 79 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTTTSCCHHHH----HH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE--EEEEECCEEEEEEEEECCCchhhHHHHHHH----Hh
Confidence 3457899999999999999999999863 456678876654 222111122479999999999888777776 11
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++|+|||++++.++ +.+..|+..+.+... ..++|+++|+||+|+..
T Consensus 80 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 80 --AGHGFLLVFAINDRQSF-NEVGKLFTQILRVKD----------------------------RDDFPVVLVGNKADLES 128 (181)
T ss_dssp --HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT----------------------------SSCCCEEEEEECGGGGG
T ss_pred --hCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccccc
Confidence 48999999999999998 788888877644321 23689999999999952
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+...+++.++..+++.+++|||+++.|++++++.|...+..
T Consensus 129 -----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 129 -----QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp -----GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -----ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 44555677889999999999999999999999999999888743
No 38
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=195.71 Aligned_cols=169 Identities=17% Similarity=0.251 Sum_probs=121.9
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
.....+||+|+|++|||||||+++|+++. ..+.++++.++........ .....++|||+||++.+..+...+ +
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~----~ 98 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-GERTVLQLWDTAGQERFRSIAKSY----F 98 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-TEEEEEEEEECTTCTTCHHHHHHH----H
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-CEEEEEEEEECCCCcchhhhHHHH----H
Confidence 34557999999999999999999999864 3566788877653333221 122379999999999988887777 1
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|||++++.++ +.+..|++.+..... .++|++||+||+|+.
T Consensus 99 ~--~~d~iilv~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 99 R--KADGVLLLYDVTCEKSF-LNIREWVDMIEDAAH-----------------------------ETVPIMLVGNKADIR 146 (199)
T ss_dssp H--HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHC--------------------------------CCEEEEEECGGGH
T ss_pred h--hCCEEEEEEECCChHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECcccc
Confidence 1 49999999999999998 788889887765322 258999999999985
Q ss_pred CCCC-cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 189 ENLE-PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 189 ~d~d-~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.... ...+.+..+.++.++..+++++++|||+++.|++++++.|...+
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2100 01345667788899999999999999999999999999998876
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=8.3e-21 Score=186.29 Aligned_cols=167 Identities=14% Similarity=0.201 Sum_probs=128.4
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++.+..+...+ ++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 78 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPF----YR- 78 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGG----GT-
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHH----Hh-
Confidence 457899999999999999999999863 456688887764333221 1122389999999999988888777 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++++|||++++.++ +.+..|+..+...... ....++|+++|+||+|+.
T Consensus 79 -~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~i~v~nK~Dl~-- 129 (177)
T 1wms_A 79 -GSDCCLLTFSVDDSQSF-QNLSNWKKEFIYYADV-------------------------KEPESFPFVILGNKIDIS-- 129 (177)
T ss_dssp -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTC-------------------------SCTTTSCEEEEEECTTCS--
T ss_pred -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHccc-------------------------cccCCCcEEEEEECCccc--
Confidence 59999999999999998 7888899887765432 122468999999999985
Q ss_pred CCcchhhhhHHHHHHHHH-HcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~-~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+....+++++++. ..++++++|||+++.|++++++.|...++.
T Consensus 130 ----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 130 ----ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp ----SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ----ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34455667888888 567899999999999999999999888753
No 40
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.86 E-value=4.1e-21 Score=194.63 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=131.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|++.. ..+.++++.+|........ .....+.+||+||++.+..+...+ ++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~----~~- 79 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-GKTVKLQIWDTAGQERFRTITSSY----YR- 79 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGG----GT-
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHh----cc-
Confidence 346899999999999999999999864 4567888888754333321 122379999999998887776666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+.... ..++|++||+||+|+..
T Consensus 80 -~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~nK~Dl~~- 127 (206)
T 2bcg_Y 80 -GSHGIIIVYDVTDQESF-NGVKMWLQEIDRYA-----------------------------TSTVLKLLVGNKCDLKD- 127 (206)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCTT-
T ss_pred -CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECCCCcc-
Confidence 59999999999999998 88888988776532 12689999999999953
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+..+.++.++..++++++++||++|.|++++++.|...+..
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 128 ----KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp ----TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34555677888999999999999999999999999999888754
No 41
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=7.6e-21 Score=187.54 Aligned_cols=166 Identities=18% Similarity=0.237 Sum_probs=129.7
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
..+..+||+|+|++|||||||+++|+++. ..+.++++..+. ...........+.+||+||+..+..+...+ +
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~ 87 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--KKVVLDGEEVQIDILDTAGQEDYAAIRDNY----F 87 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTCCHHHHHHH----H
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE--EEEEECCEEEEEEEEECCCCcccHHHHHHH----h
Confidence 35567999999999999999999999864 455677775542 222112222379999999999988888777 1
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|||++++.++ +.+..|+..+.+... ..++|++||+||+|+.
T Consensus 88 ~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 88 R--SGEGFLCVFSITEMESF-AATADFREQILRVKE----------------------------DENVPFLLVGNKSDLE 136 (187)
T ss_dssp H--HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHC----------------------------CTTCCEEEEEECGGGG
T ss_pred c--cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECcccc
Confidence 1 49999999999999998 888888887766432 1258999999999985
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
. .+....+++++++..+++++++|||+++.|++++++.|...+..
T Consensus 137 ~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 137 D-----KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp G-----GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred c-----cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 2 44556678889999999999999999999999999999887743
No 42
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=192.53 Aligned_cols=165 Identities=20% Similarity=0.310 Sum_probs=129.8
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|++.. ..+.++++.++....... ......+.+||+||++++..+...+ ++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~ 96 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAY----YR 96 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEEEEEESCCCTTCTTHHHH----HT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHH----hc
Confidence 3456899999999999999999999864 355678887754332222 1223489999999999888877777 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+..|+..+... ...++|+++|+||+|+..
T Consensus 97 --~~d~vi~v~D~~~~~s~-~~~~~~l~~i~~~-----------------------------~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 97 --GAVGALLVFDLTKHQTY-AVVERWLKELYDH-----------------------------AEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp --TCCEEEEEEETTCHHHH-HTHHHHHHHHHTT-----------------------------SCTTCEEEEEEECGGGGG
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHh-----------------------------cCCCCeEEEEEECCCccc
Confidence 49999999999999987 7778888765432 123689999999999952
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+....++.++..+++.+++|||+++.|++++++.|...+..
T Consensus 145 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 145 -----AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp -----GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred -----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999999999999887743
No 43
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.86 E-value=5.4e-21 Score=187.33 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=129.1
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
.+..++|+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++.+..+...+ ++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~----~~ 85 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSY----IR 85 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHH----HH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHH----hc
Confidence 3456999999999999999999999753 456688887764333322 1122379999999999888877776 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|+|++++.++ +.+..|+..+..... .++|+++|+||+|+..
T Consensus 86 --~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 86 --DSTVAVVVYDITNTNSF-HQTSKWIDDVRTERG-----------------------------SDVIIMLVGNKTDLSD 133 (179)
T ss_dssp --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT-----------------------------TSSEEEEEEECGGGGG
T ss_pred --CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECCcccc
Confidence 49999999999999987 788888887765432 2589999999999852
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.....+.+.++..+++++++|||+++.|++++++.|...+
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 134 -----KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp -----GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred -----cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445556778888999999999999999999999999988765
No 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.86 E-value=4.6e-21 Score=186.71 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=115.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhccccccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQ 111 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~ 111 (890)
.+||+|+|++|||||||+++|++.. ..+.++.+.++...... .......+.+||++|+..+.. +...+ ++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~----~~-- 74 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGGWLQDHC----LQ-- 74 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEE-ETTEEEEEEEECCCCC--------CHH----HH--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEE-ECCeEEEEEEEECCCccccchhhhhhh----hc--
Confidence 5799999999999999999998743 23334445454322222 222234899999999988765 44444 11
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++++|||+++++++ +.+..|+..+..... ..++|+++|+||+|+.
T Consensus 75 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~ilv~nK~Dl~--- 122 (169)
T 3q85_A 75 TGDAFLIVFSVTDRRSF-SKVPETLLRLRAGRP----------------------------HHDLPVILVGNKSDLA--- 122 (169)
T ss_dssp HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHST----------------------------TSCCCEEEEEECTTCG---
T ss_pred cCCEEEEEEECCChHHH-HHHHHHHHHHHhccc----------------------------CCCCCEEEEeeCcchh---
Confidence 38999999999999998 888888877655321 1268999999999985
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+.+.+..+++.+++..+++++++|||+++.|++++++.|.+.+.
T Consensus 123 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 123 --RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp --GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred --hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence 35667778899999999999999999999999999999988763
No 45
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=7.7e-21 Score=184.65 Aligned_cols=162 Identities=19% Similarity=0.215 Sum_probs=125.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++|+|+|++|||||||+++|+++.. .+.++++..+. ...........+.+||+||+.++..+...+ +.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~----~~-- 73 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR--QVISCDKSICTLQITDTTGSHQFPAMQRLS----IS-- 73 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE--EEEEETTEEEEEEEEECCSCSSCHHHHHHH----HH--
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE--EEEEECCEEEEEEEEECCCchhhHHHHHHh----cc--
Confidence 368999999999999999999998643 55677775542 222112222379999999999988887777 11
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|+|++++.++ +.+..|+..+.+.... ..++|+++|+||+|+..
T Consensus 74 ~~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~---------------------------~~~~pii~v~nK~Dl~~-- 123 (172)
T 2erx_A 74 KGHAFILVYSITSRQSL-EELKPIYEQICEIKGD---------------------------VESIPIMLVGNKCDESP-- 123 (172)
T ss_dssp HCSEEEEEEETTCHHHH-HTTHHHHHHHHHHHC------------------------------CCCEEEEEECGGGGG--
T ss_pred cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhCC---------------------------CCCCCEEEEEEcccccc--
Confidence 48999999999999987 7788888777654321 12589999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.......+.++..++++++++||+++.|++++++.|...+
T Consensus 124 ---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 124 ---SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp ---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ---ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 344556677888999999999999999999999999998764
No 46
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=9.4e-21 Score=187.54 Aligned_cols=162 Identities=17% Similarity=0.273 Sum_probs=124.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++|+|+|++|||||||+++|+++. ..+.++++..+. ...........+++||+||++.+..+...+ ++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~-- 74 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR--KQVVIDGETCLLDILDTAGQEEYSAMRDQY----MR-- 74 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE--EEEEETTEEEEEEEEECCCC---CTTHHHH----HH--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE--EEEEECCcEEEEEEEECCCcHHHHHHHHHH----Hh--
Confidence 47899999999999999999999864 455566653322 222222223378999999999988888877 11
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++++|||++++.++ +.+..|+..+..... ..++|+++|+||+|+.
T Consensus 75 ~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~i~v~nK~Dl~--- 122 (189)
T 4dsu_A 75 TGEGFLCVFAINNTKSF-EDIHHYREQIKRVKD----------------------------SEDVPMVLVGNKCDLP--- 122 (189)
T ss_dssp HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHTT----------------------------CSCCCEEEEEECTTSS---
T ss_pred cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEECccCc---
Confidence 48999999999999998 788888887765422 2368999999999995
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+....+.++.++..++++++++||++|.|++++++.|...+..
T Consensus 123 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 123 ---SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp ---SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999999999999888753
No 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=1.2e-20 Score=187.76 Aligned_cols=161 Identities=17% Similarity=0.274 Sum_probs=127.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEecccc-----------------------------
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVM----------------------------- 81 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~----------------------------- 81 (890)
...++|+|+|++|||||||+++|++.. ..+.+|++.++...........
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 347899999999999999999999863 4667888877654333311100
Q ss_pred -------ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649 82 -------KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRG 154 (890)
Q Consensus 82 -------k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~ 154 (890)
...+.|||+||++.+..+...+ ++ ++|++|+|+|++++.++ +.+..|+..+.+..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~~----------- 146 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLY----YR--GATCAIVVFDISNSNTL-DRAKTWVNQLKISS----------- 146 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHH----HT--TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHH----hc--CCCEEEEEEECCCHHHH-HHHHHHHHHHHhhC-----------
Confidence 0579999999999888877776 22 49999999999999998 77888887665421
Q ss_pred ccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 155 SFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 155 ~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
++|+++|+||+|+. .+....+++++++..+++++++|||+++.|++++++.|.+
T Consensus 147 --------------------~~piilv~NK~D~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 147 --------------------NYIIILVANKIDKN------KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp --------------------CCEEEEEEECTTCC-------CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred --------------------CCcEEEEEECCCcc------cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 38999999999942 4455667889999999999999999999999999999988
Q ss_pred HHh
Q psy11649 235 YAF 237 (890)
Q Consensus 235 ~lf 237 (890)
.++
T Consensus 201 ~~~ 203 (208)
T 3clv_A 201 EIY 203 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 48
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.86 E-value=4.6e-21 Score=191.65 Aligned_cols=164 Identities=18% Similarity=0.308 Sum_probs=126.6
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh-hHHhhhhcccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL-EVASLFSSFSL 108 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~-~Li~~~r~~~~ 108 (890)
....+||+|+|++|||||||+++|+++. ..+.++++.++....... ......+.+||+||++++. .+...+ +
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~----~ 91 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHY----Y 91 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHH----H
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHH----h
Confidence 4567999999999999999999999864 356688888765433322 1122489999999998887 666666 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|||++++.++ +.+..|+..+.+... ..++|+++|+||+|+.
T Consensus 92 ~--~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 92 R--NVHAVVFVYDMTNMASF-HSLPAWIEECKQHLL----------------------------ANDIPRILVGNKCDLR 140 (189)
T ss_dssp T--TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHCC----------------------------CSCCCEEEEEECTTCG
T ss_pred c--CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECcccc
Confidence 2 49999999999999998 788889887765431 2368999999999995
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCC---CCHHHHHHHHHHHH
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP---GLVKRTRDILNHYA 236 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~---~nId~Lk~~I~~~l 236 (890)
. .+.+..+.+++++..+++.+++|||+++ .|++++++.|...+
T Consensus 141 ~-----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 141 S-----AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp G-----GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred c-----cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 2 4455667788999999999999999999 99999988876654
No 49
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.85 E-value=2e-20 Score=180.03 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=124.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTA 110 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~ 110 (890)
..++|+++|++|||||||+++|+++. ..+.++++..+. ...........+.+||+||+.++..+...+ +
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------ 73 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR--KQVVIDGETCLLDILDTAGQEEYSAMRDQYMR------ 73 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCCSSCCHHHHHHHH------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEE--EEEEECCEEEEEEEEECCCchhhhHHHHHhhc------
Confidence 36799999999999999999999863 345566664432 222122223378999999999888887777 3
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++++|+|++++.++ +.+..|+..+.+... ..++|+++|+||+|+..
T Consensus 74 -~~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~----------------------------~~~~p~iiv~nK~Dl~~- 122 (166)
T 2ce2_X 74 -TGEGFLCVFAINNTKSF-EDIHQYREQIKRVKD----------------------------SDDVPMVLVGNKSDLAA- 122 (166)
T ss_dssp -HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT----------------------------CSCCCEEEEEECTTCSC-
T ss_pred -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEEchhhhh-
Confidence 38999999999999988 778888887765432 12589999999999862
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+....+.+++++..++++++++||+++.|++++++.|...+
T Consensus 123 -----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 123 -----RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp -----CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -----cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 34456778889999999999999999999999999998775
No 50
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=188.94 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=130.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....++|+|+|++|||||||+++|+++. ..+.+|++..+. ...........+.+||+||++.+..+...+ ++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~ 84 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--KKVVLDGEEVQIDILDTAGQEDYAAIRDNY----FR 84 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTCCHHHHHHH----HH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE--EEEEECCEEEEEEEEcCCChhhhHHHHHHH----Hh
Confidence 4457999999999999999999999864 456677775542 222112222379999999999998888777 11
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++|+|||++++.++ +.+..|+..+..... ..++|++||+||+|+..
T Consensus 85 --~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 85 --SGEGFLCVFSITEMESF-AATADFREQILRVKE----------------------------DENVPFLLVGNKSDLED 133 (206)
T ss_dssp --HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHTT----------------------------CSCCCEEEEEECTTCGG
T ss_pred --hCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEeccCccc
Confidence 48999999999999998 888888887765432 23689999999999952
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+..++++.++..++++++++||++|.|++++++.|...+..
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 134 -----KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp -----GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred -----cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 44556678889999999999999999999999999999888754
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=194.08 Aligned_cols=165 Identities=20% Similarity=0.252 Sum_probs=128.6
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+++. ..+.+|++..| ............++||||||++.+..+...+ ++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~ 94 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY--SKIVTLGKDEFHLHLVDTAGQDEYSILPYSF----II 94 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE--EEEEC----CEEEEEEEECCCCTTCCCCGGG----TT
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE--EEEEEECCEEEEEEEEECCCccchHHHHHHH----Hh
Confidence 4567999999999999999999999864 45567777654 2222222233489999999999887777766 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+..|+..+.+... ..++|++||+||+|+.
T Consensus 95 --~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~- 142 (201)
T 3oes_A 95 --GVHGYVLVYSVTSLHSF-QVIESLYQKLHEGHG----------------------------KTRVPVVLVGNKADLS- 142 (201)
T ss_dssp --TCCEEEEEEETTCHHHH-HHHHHHHHHHHC---------------------------------CCCEEEEEECTTCG-
T ss_pred --cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccCc-
Confidence 59999999999999998 888888876654321 2368999999999985
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+.+.+...+++.++..+++++++|||+++.|++++++.|...+..
T Consensus 143 ----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 143 ----PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp ----GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ----cccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 255666778899999999999999999999999999999988754
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=185.84 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=116.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc--hhhHHhhhhcccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS--RLEVASLFSSFSLTA 110 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~--~~~Li~~~r~~~~~~ 110 (890)
..+||+|+|++|||||||+++|++... ...++.+.++...... .......+.+||++|+.. +..+...+ ++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~~~~~~~~~~~----~~- 76 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLT-VDGEDTTLVVVDTWEAEKLDKSWSQESC----LQ- 76 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEE-ETTEEEEEEEECCC-------CHHHHHT----TT-
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEE-ECCEEEEEEEEecCCCCccchhhhHHhh----cc-
Confidence 468999999999999999999998643 2235666664322221 112223799999999977 44555555 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++++|||++++.++ +.+..|+..+.+.. ...++|+++|+||+|+..
T Consensus 77 -~~~~~i~v~d~~~~~s~-~~~~~~~~~l~~~~----------------------------~~~~~piilv~NK~Dl~~- 125 (175)
T 2nzj_A 77 -GGSAYVIVYSIADRGSF-ESASELRIQLRRTH----------------------------QADHVPIILVGNKADLAR- 125 (175)
T ss_dssp -SCSEEEEEEETTCHHHH-HHHHHHHHHHHHCC--------------------------------CCEEEEEECTTCTT-
T ss_pred -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhh----------------------------ccCCCCEEEEEEChhhcc-
Confidence 58999999999999998 77888887665421 112689999999999953
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+.+..++.+.++..+++++++|||++|.|++++++.|.+.+.
T Consensus 126 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 126 ----CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp ----TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3455566788899999999999999999999999999988764
No 53
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=194.26 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=123.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.++++.++....... ......+.|||+||++.+..+...+ ++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~----~~- 96 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSY----YR- 96 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHH----HT-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHH----hc-
Confidence 457899999999999999999999863 356688887764332221 1122489999999998777666665 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+..... .++|++||+||+|+..
T Consensus 97 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~piilv~nK~Dl~~- 144 (200)
T 2o52_A 97 -GAAGALLVYDITSRETY-NSLAAWLTDARTLAS-----------------------------PNIVVILCGNKKDLDP- 144 (200)
T ss_dssp -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHTC-----------------------------TTCEEEEEEECGGGGG-
T ss_pred -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECCCccc-
Confidence 59999999999999998 788888887665322 2689999999999852
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+...++..++..+++.+++|||+++.|++++++.|...+..
T Consensus 145 ----~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 145 ----EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp ----GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 44555677888999999999999999999999999999888754
No 54
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1e-20 Score=195.89 Aligned_cols=165 Identities=19% Similarity=0.163 Sum_probs=121.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-hhhHHhhhhccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-RLEVASLFSSFS 107 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-~~~Li~~~r~~~ 107 (890)
....+||+|||++|||||||+++|++... ...+++|.++...... .......+.+|||+|+.. +..+...+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~-~~~~~~~l~~~Dt~g~~~~~~~l~~~~---- 108 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM-VDGESATIILLDMWENKGENEWLHDHC---- 108 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEE-ETTEEEEEEEECCTTTTHHHHHHHHCC----
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEE-ECCeeeEEEEeecCCCcchhhhHHHHH----
Confidence 34568999999999999999999997432 3335677775322222 122223789999999876 33444444
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
++ +++++|+|||++++.+| +.+..|...+.+.. ...++|++|||||+|+
T Consensus 109 ~~--~a~~~ilVydvt~~~sf-~~~~~~~~~l~~~~----------------------------~~~~~piilVgNK~DL 157 (211)
T 2g3y_A 109 MQ--VGDAYLIVYSITDRASF-EKASELRIQLRRAR----------------------------QTEDIPIILVGNKSDL 157 (211)
T ss_dssp CC--CCSEEEEEEETTCHHHH-HHHHHHHHHHHTSG----------------------------GGTTSCEEEEEECTTC
T ss_pred Hh--hCCEEEEEEECCCHHHH-HHHHHHHHHHHHHh----------------------------CCCCCcEEEEEEChHH
Confidence 23 58999999999999998 78888876554311 1126899999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
. +.+.+...+.+.++..+++.+++|||++|.|++++++.|...+.
T Consensus 158 ~-----~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 158 V-----RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp G-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred h-----cCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5 24556667788889999999999999999999999999988763
No 55
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.6e-21 Score=197.02 Aligned_cols=164 Identities=20% Similarity=0.283 Sum_probs=124.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|++.. ..+.++++.+|....... ......++|||+||++++..+...+ ++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 84 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAY----YR- 84 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGG----TT-
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHH----hc-
Confidence 456899999999999999999999864 356688888865433322 1112489999999999887777666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++|+|||++++.++ +.+..|+..+..... .++|++||+||+|+..
T Consensus 85 -~~d~vilV~D~~~~~s~-~~~~~~l~~i~~~~~-----------------------------~~~piilv~nK~Dl~~- 132 (223)
T 3cpj_B 85 -GAVGALIVYDISKSSSY-ENCNHWLSELRENAD-----------------------------DNVAVGLIGNKSDLAH- 132 (223)
T ss_dssp -TCCEEEEEEC-CCHHHH-HHHHHHHHHHHHHCC-------------------------------CEEEEEECCGGGGG-
T ss_pred -cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECccccc-
Confidence 59999999999999998 788889887765321 2589999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.+..++++.++..+++++++|||+++.|++++++.|.+.+..
T Consensus 133 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 133 ----LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp ----GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred ----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 44555677889999999999999999999999999999988854
No 56
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7.7e-21 Score=189.45 Aligned_cols=164 Identities=16% Similarity=0.226 Sum_probs=129.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|++.. ..+.++++.++....... ......+.|||+||++.+..+...+ ++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 86 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSY----YR- 86 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHH----HT-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHH----hc-
Confidence 456899999999999999999999864 456788887764333322 1123489999999999888777776 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|+|++++.++ +.+..|+..+... ....++|+++|+||+|+.
T Consensus 87 -~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~----------------------------~~~~~~p~ilv~nK~Dl~-- 134 (195)
T 1x3s_A 87 -GAQGVILVYDVTRRDTF-VKLDNWLNELETY----------------------------CTRNDIVNMLVGNKIDKE-- 134 (195)
T ss_dssp -TCCEEEEEEETTCHHHH-HTHHHHHHHHTTC----------------------------CSCSCCEEEEEEECTTSS--
T ss_pred -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHh----------------------------cCcCCCcEEEEEECCcCc--
Confidence 49999999999999987 7778887655331 112368999999999984
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+....+++.+++..+++.+++|||+++.|++++++.|...+..
T Consensus 135 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 135 ----NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp ----SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ----ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 34455677888999999999999999999999999999988754
No 57
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=8.7e-21 Score=190.13 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=128.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|+++. ..+.+|++..|. ...........++|||+||++++..+...+ ++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~- 88 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA--VSVTVGGKQYLLGLYDTAGQEDYDRLRPLS----YP- 88 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE--EEEESSSCEEEEEEECCCCSSSSTTTGGGG----CT-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE--EEEEECCEEEEEEEEECCCCcchhHHHHHh----cC-
Confidence 356899999999999999999999863 466788886653 222222223489999999999888877776 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+. .|+..+.+... ++|++||+||+|+..
T Consensus 89 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------------------~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 89 -MTDVFLICFSVVNPASF-QNVKEEWVPELKEYAP------------------------------NVPFLLIGTQIDLRD 136 (194)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHST------------------------------TCCEEEEEECTTSTT
T ss_pred -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------------------CCCEEEEEEChhhcc
Confidence 59999999999999998 6665 78877765321 589999999999963
Q ss_pred CCCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+... .++.+..+++.+++..+++ .+++|||++|.|++++++.|.+.++
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 2100 1245667788999999998 8999999999999999999988764
No 58
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.85 E-value=1.5e-20 Score=188.70 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=124.3
Q ss_pred cCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649 30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFS 107 (890)
Q Consensus 30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~ 107 (890)
...+..+||+|+|++|||||||+++|+++. ..+.+|.+ +|. ...........++||||+|++.+. .++
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~--~~~~~~~~~~~l~i~Dt~G~~~~~----~~~--- 84 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFK--KEIVVDGQSYLLLIRDEGGPPELQ----FAA--- 84 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEE--EEEEETTEEEEEEEEECSSSCCHH----HHH---
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEE--EEEEECCEEEEEEEEECCCChhhh----eec---
Confidence 456778999999999999999999999864 34556633 442 222222223478999999998876 222
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
+++++|+|||++++.+| +.+..|+..+.... ...++|++|||||+|+
T Consensus 85 ----~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~----------------------------~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 85 ----WVDAVVFVFSLEDEISF-QTVYNYFLRLCSFR----------------------------NASEVPMVLVGTQDAI 131 (184)
T ss_dssp ----HCSEEEEEEETTCHHHH-HHHHHHHHHHHTTS----------------------------CGGGSCEEEEEECTTC
T ss_pred ----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEEECccc
Confidence 38999999999999998 78888988765421 1125899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.. ...+.+..+++++++..++ +.+++|||+++.|++++++.|...+.
T Consensus 132 ~~---~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 132 SA---ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp BT---TBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred cc---ccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 42 2345667788999999997 89999999999999999999988764
No 59
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.85 E-value=2.6e-21 Score=190.81 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=115.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.+|++..|.. ..........+++||+||++++..+...+ ++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 78 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA--NVVVNGATVNLGLWDTAGQEDYNRLRPLS----YR- 78 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC--CCC-------CEEECCCC-CTTTTTGGGG----GT-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE--EEEECCEEEEEEEEECCCChhhhhhHHhh----cc-
Confidence 457899999999999999999999864 3556777654421 11111122368899999999888777766 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+. .|+..+.... .++|+++|+||+|+..
T Consensus 79 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 79 -GADVFILAFSLISKASY-ENVSKKWIPELKHYA------------------------------PGVPIVLVGTKLDLRD 126 (182)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------TTCCEEEEEECHHHHT
T ss_pred -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEechhhhc
Confidence 59999999999999998 6665 6887766532 1589999999999853
Q ss_pred CCCcchhh----------hhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKR----------IAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~----------~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+. +..+++.+++..+++ ++++|||+++.|++++++.|.+.++
T Consensus 127 -----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 127 -----DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp -----CHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred -----CcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 222 356778899999997 8999999999999999999988764
No 60
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.85 E-value=8.8e-21 Score=189.06 Aligned_cols=167 Identities=17% Similarity=0.247 Sum_probs=127.1
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+++. ..+.||++..|. ...........+++||+||++.+..+...+ ++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~ 77 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPYYDNVRPLS----YP 77 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE--EEEECSSCEEEEEEEEECCSGGGTTTGGGG----CT
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEEECCEEEEEEEEECCCChhhhhhHHhh----cC
Confidence 3457899999999999999999999864 456788886653 222222223489999999999888777666 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+++++|+|||++++.++ +.+ ..|+..+.+.. .++|+++||||+|+.
T Consensus 78 --~~~~~i~v~d~~~~~s~-~~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 78 --DSDAVLICFDISRPETL-DSVLKKWKGEIQEFC------------------------------PNTKMLLVGCKSDLR 124 (184)
T ss_dssp --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------TTCEEEEEEECGGGG
T ss_pred --CCcEEEEEEECCCHHHH-HHHHHHHHHHHHHHC------------------------------CCCCEEEEEEcchhh
Confidence 59999999999999998 666 78887775532 158999999999995
Q ss_pred CCCC-------cchhhhhHHHHHHHHHHcC-CeEEEEecc-CCCCHHHHHHHHHHHHh
Q psy11649 189 ENLE-------PNKKRIAVQCLRYLAHVNG-ASLLFHSSL-DPGLVKRTRDILNHYAF 237 (890)
Q Consensus 189 ~d~d-------~e~r~~i~~~lr~la~~~G-a~l~etSAK-~~~nId~Lk~~I~~~lf 237 (890)
.+.. ...+.+..+++++++..+| +++++|||+ ++.|++++++.|...+.
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp GCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred cchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 3100 0124456678899999988 689999999 68999999999988764
No 61
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.85 E-value=2.7e-21 Score=197.63 Aligned_cols=167 Identities=13% Similarity=0.160 Sum_probs=128.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+++. ..+.++++..+..............+++||+||++.+..+...+ +.
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~ 83 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY----YI 83 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH----HT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH----hh
Confidence 4457999999999999999999999753 34457777654332222222222479999999998887766666 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+..|+..+...... ++|+++|+||+|+..
T Consensus 84 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-----------------------------~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 84 --GASGAILFFDVTSRITC-QNLARWVKEFQAVVGN-----------------------------EAPIVVCANKIDIKN 131 (218)
T ss_dssp --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCS-----------------------------SSCEEEEEECTTCC-
T ss_pred --cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC-----------------------------CCCEEEEEECCCCcc
Confidence 59999999999999998 7888998877665432 589999999999852
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
.+.+....++.++..+++++++|||++|.|++++++.|...+...
T Consensus 132 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 132 -----RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp --------CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred -----ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 446667788889999999999999999999999999999988543
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.85 E-value=1.2e-20 Score=186.43 Aligned_cols=167 Identities=19% Similarity=0.179 Sum_probs=127.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
+..++|+|+|++|||||||+++|+++. ..+.+|++..+.. ..........+++||+||++++..+...+ ++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 75 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTAGQEDYDRLRPLS----YP- 75 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEE--EEEETTEEEEEEEECCCCSGGGTTTGGGG----CT-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEE--EEEECCEEEEEEEEECCCCHhHHHHHHHh----cc-
Confidence 467899999999999999999999753 4566777755432 11112223378999999999887777666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+. .|+..+.+.. .++|+++|+||+|+..
T Consensus 76 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 76 -QTDVSLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLRD 123 (186)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHS------------------------------TTSCEEEEEECHHHHT
T ss_pred -CCcEEEEEEECCChhhH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEeEcccccc
Confidence 59999999999999998 6665 6887665532 1589999999999853
Q ss_pred CCCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+... ..+.+..++...++..+++ ++++|||++|.|++++++.|...++.
T Consensus 124 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 2100 0134556778889999997 89999999999999999999988754
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.2e-20 Score=187.97 Aligned_cols=162 Identities=23% Similarity=0.190 Sum_probs=127.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.+|++..|. ...........+++||+||++. ..+...+ ++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~----~~- 97 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR--HQATIDDEVVSMEILDTAGQED-TIQREGH----MR- 97 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCCCC-CHHHHHH----HH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE--EEEEECCEEEEEEEEECCCCCc-ccchhhh----hc-
Confidence 457899999999999999999999864 456678876653 2121122234799999999987 5555555 12
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|++.+.+... ..++|++||+||+|+..
T Consensus 98 -~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~NK~Dl~~- 146 (196)
T 2atv_A 98 -WGEGFVLVYDITDRGSF-EEVLPLKNILDEIKK----------------------------PKNVTLILVGNKADLDH- 146 (196)
T ss_dssp -HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT----------------------------TSCCCEEEEEECGGGGG-
T ss_pred -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhhC----------------------------CCCCcEEEEEECccccc-
Confidence 48999999999999998 888888887766432 12689999999999952
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCC-CHHHHHHHHHHHHh
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPG-LVKRTRDILNHYAF 237 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~-nId~Lk~~I~~~lf 237 (890)
.+.+..++++.++..+++++++|||+++. |++++++.|...+.
T Consensus 147 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 147 ----SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp ----GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 45566778889999999999999999999 99999999988774
No 64
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=1e-20 Score=191.72 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=128.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....++|+|+|++|||||||+++|++.. ..+.++++.++........ .....+.+||+||++.+..+...+ ++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~----~~ 91 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQLWDTAGQERFRTITTAY----YR 91 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-TEEEEEEEECCTTGGGGTCCCHHH----HT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHH----hc
Confidence 3456899999999999999999999864 4567888888654333321 112379999999998887766666 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+..|+..+..... .++|+++|+||+|+.
T Consensus 92 --~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~- 138 (213)
T 3cph_A 92 --GAMGIILVYDVTDERTF-TNIKQWFKTVNEHAN-----------------------------DEAQLLLVGNKSDME- 138 (213)
T ss_dssp --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHTT-----------------------------TCSEEEEEEECTTCS-
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECCCCc-
Confidence 59999999999999987 788888887765432 258999999999983
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+....+.++.++..+++++++|||+++.|++++++.|...+..
T Consensus 139 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 139 -----TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp -----SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred -----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34455667888999999999999999999999999999887743
No 65
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.85 E-value=1.1e-20 Score=192.37 Aligned_cols=162 Identities=20% Similarity=0.203 Sum_probs=126.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.+|++..|.. ..........++|||+||++.+..+...+ ++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 79 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA--NVAVDGQIVNLGLWDTAGQEDYSRLRPLS----YR- 79 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEE--EEECSSCEEEEEEECCCCCCCCCC--CGG----GT-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEE--EEEECCEEEEEEEEECCCcHHHHHHHHhh----cc-
Confidence 357899999999999999999999864 4567888866532 22122223489999999999988887776 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +++. .|+..+.... .++|++||+||+|+..
T Consensus 80 -~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 80 -GADIFVLAFSLISKASY-ENVLKKWMPELRRFA------------------------------PNVPIVLVGTKLDLRD 127 (212)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------TTCCEEEEEECHHHHT
T ss_pred -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEeCHHhhh
Confidence 59999999999999998 6664 7888776532 1589999999999853
Q ss_pred CCCcchhh--------hhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPNKKR--------IAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e~r~--------~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+. +..+++..++..+|+ ++++|||+++.|++++++.|...+..
T Consensus 128 -----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 128 -----DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp -----CHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred -----CccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 222 256778899999996 89999999999999999999988754
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.85 E-value=1.1e-20 Score=191.63 Aligned_cols=169 Identities=18% Similarity=0.257 Sum_probs=128.6
Q ss_pred cCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649 30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFS 107 (890)
Q Consensus 30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~ 107 (890)
......+||+|+|++|||||||+++|+++. ..+.+|++.+|.. ..........+.+||+||++++..+...+
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---- 93 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA--DIEVDGKQVELALWDTAGQEDYDRLRPLS---- 93 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE--EEEETTEEEEEEEECCCCSGGGTTTGGGG----
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE--EEEECCEEEEEEEEECCCchhHHHHHHHh----
Confidence 345567899999999999999999999863 4567888877642 12111122389999999999888777766
Q ss_pred cccccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
++ ++|++|+|||++++.++ +.+ ..|.+.+.+.. .++|+++|+||+|
T Consensus 94 ~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~D 140 (201)
T 2gco_A 94 YP--DTDVILMCFSIDSPDSL-ENIPEKWTPEVKHFC------------------------------PNVPIILVGNKKD 140 (201)
T ss_dssp CT--TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHS------------------------------TTCCEEEEEECGG
T ss_pred cC--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEecHH
Confidence 22 59999999999999998 566 67887665532 1589999999999
Q ss_pred CCCCCCcc-------hhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 187 LFENLEPN-------KKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 187 l~~d~d~e-------~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+..+.... .+.+..+++..++..+++ .+++|||+++.|++++++.|...++
T Consensus 141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp GTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 96421100 133556778899999998 8999999999999999999988764
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.85 E-value=2.8e-21 Score=194.62 Aligned_cols=169 Identities=16% Similarity=0.182 Sum_probs=97.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC--C--CCCCCCccceeEEEEEEecccc-ceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK--N--DTPKPTLALEYIYARKSGKTVM-KDICHLWELGSGTSRLEVASLFSSFS 107 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~--~~~kptigvdY~f~~~~g~~~~-k~~l~IwDlpG~~~~~~Li~~~r~~~ 107 (890)
...++|+|+|++|||||||+++|++. . ..+.+|+++++........... ...+.+||+||++.+..+...+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---- 93 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQY---- 93 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTT----
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHH----
Confidence 45689999999999999999999986 3 3667888877543333221110 3489999999998888877776
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
++ ++|++|+|||++++.++ +.+..|+..+...... ...++|++||+||+|+
T Consensus 94 ~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilv~nK~Dl 144 (208)
T 2yc2_C 94 WN--GVYYAILVFDVSSMESF-ESCKAWFELLKSARPD--------------------------RERPLRAVLVANKTDL 144 (208)
T ss_dssp CC--CCCEEEEEEETTCHHHH-HHHHHHHHHHHHHCSC--------------------------TTSCCEEEEEEECC--
T ss_pred Hh--hCcEEEEEEECCCHHHH-HHHHHHHHHHHHhhcc--------------------------cccCCcEEEEEECccc
Confidence 22 59999999999999998 8888898877654320 0136899999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccC-CCCHHHHHHHHHHHHhc
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD-PGLVKRTRDILNHYAFS 238 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~-~~nId~Lk~~I~~~lf~ 238 (890)
..+ .+.+..++++.++..+++++++|||++ +.|++++++.|...+..
T Consensus 145 ~~~----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 145 PPQ----RHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp ---------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred chh----hccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 520 345556788999999999999999999 99999999999887643
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=2.9e-20 Score=185.45 Aligned_cols=167 Identities=16% Similarity=0.240 Sum_probs=119.3
Q ss_pred ccCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649 29 IDIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSF 106 (890)
Q Consensus 29 ~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~ 106 (890)
+...+..++|+|+|++|||||||+++|+++. ..+.++++..+. ...........+.|||+||+..+..+...+
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~--- 89 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR--KQVVIDGETCLLDILDTAGQEEYSAMRDQY--- 89 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCC--------------
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE--EEEEECCEEEEEEEEECCChHHHHHHHHHh---
Confidence 3345678999999999999999999999863 345566664432 222112222379999999998887777766
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
++ +++++++|||++++.++ +.+..|+..+..... ..++|+++|+||+|
T Consensus 90 -~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~p~ilv~nK~D 137 (190)
T 3con_A 90 -MR--TGEGFLCVFAINNSKSF-ADINLYREQIKRVKD----------------------------SDDVPMVLVGNKCD 137 (190)
T ss_dssp -CT--TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT----------------------------CSCCCEEEEEECTT
T ss_pred -hC--cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhC----------------------------CCCCeEEEEEECCc
Confidence 22 59999999999999997 788889887765432 12589999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+.. +....+++++++..+++++++|||+++.|++++++.|...+..
T Consensus 138 l~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 138 LPT------RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp CSC------CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCc------ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 852 3445677889999999999999999999999999999887743
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=2e-20 Score=188.74 Aligned_cols=167 Identities=15% Similarity=0.247 Sum_probs=129.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|++.. ..+.++++.++....... ......+.+||+||+..+..+...+ ++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~- 79 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAF----YR- 79 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGG----GT-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHH----Hh-
Confidence 357899999999999999999999864 456788887754333221 1123489999999998887766665 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|+|++++.++ +.+..|+..+...... ....++|+++|+||+|+.
T Consensus 80 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------~~~~~~piilv~nK~Dl~-- 130 (207)
T 1vg8_A 80 -GADCCVLVFDVTAPNTF-KTLDSWRDEFLIQASP-------------------------RDPENFPFVVLGNKIDLE-- 130 (207)
T ss_dssp -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------------SSGGGSCEEEEEECTTSS--
T ss_pred -CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhccc-------------------------ccCCCCcEEEEEECCCCc--
Confidence 59999999999999998 7888898877665421 112358999999999995
Q ss_pred CCcchhhhhHHHHHHHHH-HcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 191 LEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~-~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+....+.++.++. ..++++++|||++|.|++++++.|...+..
T Consensus 131 ----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 131 ----NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp ----CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 23444566777887 678899999999999999999999988764
No 70
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=189.44 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=123.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....++|+|+|++|||||||+++|+++. ..+.+|++..|. ...........+++||+||++++..+...+ ++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~ 90 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS--AVVSVDGRPVRLQLCDTAGQDEFDKLRPLC----YT 90 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE--EEEEETTEEEEEEEEECCCSTTCSSSGGGG----GT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE--EEEEECCEEEEEEEEECCCCHHHHHHhHhh----cC
Confidence 4567999999999999999999999864 456677775543 222112222378999999999887777666 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
++|++|+|||++++.++ +.+. .|+..+.... .++|++||+||+|+.
T Consensus 91 --~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 91 --NTDIFLLCFSVVSPSSF-QNVSEKWVPEIRCHC------------------------------PKAPIILVGTQSDLR 137 (201)
T ss_dssp --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------SSSCEEEEEECGGGG
T ss_pred --CCcEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEECHhhh
Confidence 59999999999999998 6665 7887766532 158999999999996
Q ss_pred CCCC-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLE-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+.. ...+.+..+++..++..+++ ++++|||+++.|++++++.|...+..
T Consensus 138 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp GCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 3100 01244566788899999998 89999999999999999999887753
No 71
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.84 E-value=6e-21 Score=194.94 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=128.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccc---------cceEEEEEEcCCCcchhhHH
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTV---------MKDICHLWELGSGTSRLEVA 100 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~---------~k~~l~IwDlpG~~~~~~Li 100 (890)
....+||+|+|++|||||||+++|++.. ..+.+|++++|.......... ....++|||+||++++..+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 3457999999999999999999999864 345577777764333221110 03479999999999888877
Q ss_pred hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649 101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180 (890)
Q Consensus 101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV 180 (890)
..+ ++ ++|++|+|||++++.++ +.+..|+..+... ....++|++|
T Consensus 102 ~~~----~~--~~d~iilV~D~~~~~s~-~~~~~~l~~i~~~----------------------------~~~~~~piil 146 (217)
T 2f7s_A 102 TAF----FR--DAMGFLLMFDLTSQQSF-LNVRNWMSQLQAN----------------------------AYCENPDIVL 146 (217)
T ss_dssp HHH----HT--TCCEEEEEEETTCHHHH-HHHHHHHHTCCCC----------------------------CTTTCCEEEE
T ss_pred HHH----hc--CCCEEEEEEECcCHHHH-HHHHHHHHHHHHh----------------------------cCcCCCCEEE
Confidence 776 22 59999999999999987 7777777532210 1113689999
Q ss_pred EeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
|+||+|+.. .+.+..+.+++++..+++.+++|||+++.|++++++.|...+..
T Consensus 147 V~NK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 147 IGNKADLPD-----QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEECTTCGG-----GCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEECCcccc-----ccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999952 45556778899999999999999999999999999999888754
No 72
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=3.4e-20 Score=185.66 Aligned_cols=162 Identities=20% Similarity=0.237 Sum_probs=126.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...++|+|+|++|||||||+++|+++. ..+.++++..|. ...........+.+||+||+..+..+...+ +.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~- 78 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR--QVISCDKSVCTLQITDTTGSHQFPAMQRLS----IS- 78 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE--EEEEETTEEEEEEEEECCGGGSCHHHHHHH----HH-
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee--EEEEECCEEEEEEEEeCCChHHhHHHHHHh----hc-
Confidence 346899999999999999999999863 345677775543 222112222379999999999888877777 12
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+.+.... ..++|+++|+||+|+..
T Consensus 79 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~---------------------------~~~~piilv~nK~Dl~~- 128 (199)
T 2gf0_A 79 -KGHAFILVFSVTSKQSL-EELGPIYKLIVQIKGS---------------------------VEDIPVMLVGNKCDETQ- 128 (199)
T ss_dssp -HCSEEEEEEETTCHHHH-HTTHHHHHHHHHHHSC---------------------------GGGSCEEEEEECTTCSS-
T ss_pred -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhcC---------------------------CCCCCEEEEEECccCCc-
Confidence 48999999999999988 7777787766654321 12589999999999852
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+....+.+..++..+++.+++|||+++.|++++++.|...+
T Consensus 129 -----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 129 -----REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp -----CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred -----cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 34456677888999999999999999999999999998876
No 73
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.84 E-value=3.2e-21 Score=191.97 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=118.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC-CC-----------CCCCccceeEEEEEEe-cccc-ceEEEEEEcCCCcchh
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN-DT-----------PKPTLALEYIYARKSG-KTVM-KDICHLWELGSGTSRL 97 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~-~~-----------~kptigvdY~f~~~~g-~~~~-k~~l~IwDlpG~~~~~ 97 (890)
....+||+|+|++|||||||++.+.+.. .. +.+|++.+|. .... .... ...++||||||++.+.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL--PLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEEC--CSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeec--ccccccccCCceEEEEEeCCChHHHH
Confidence 3457999999999999999998777642 22 2346665532 2211 2222 2389999999999998
Q ss_pred hHHhhhhccccccccCcEEEEEEeCCCc------CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649 98 EVASLFSSFSLTAQSGFTLVLMLDLSRL------NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI 171 (890)
Q Consensus 98 ~Li~~~r~~~~~~~~ad~IIIV~DlSnp------~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li 171 (890)
.+...+ ++ ++|++|+|||++++ +++ +.+..|+..++ .
T Consensus 89 ~~~~~~----~~--~~d~~i~v~D~~~~~~~~~~~s~-~~l~~~l~~~~------------------------------~ 131 (198)
T 3t1o_A 89 ASRKLI----LR--GVDGIVFVADSAPNRLRANAESM-RNMRENLAEYG------------------------------L 131 (198)
T ss_dssp HHHHHH----TT--TCCEEEEEEECCGGGHHHHHHHH-HHHHHHHHHTT------------------------------C
T ss_pred HHHHHH----Hh--cCCEEEEEEECCcchhhHhHHHH-HHHHHHHHhhc------------------------------c
Confidence 888877 22 59999999999954 333 44444444221 1
Q ss_pred cCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 172 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 172 ~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
...++|++||+||+|+.. ....+++++++..+++ ++++|||+++.|++++++.|...+..
T Consensus 132 ~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 132 TLDDVPIVIQVNKRDLPD-------ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CTTSSCEEEEEECTTSTT-------CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEEchhccc-------ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 223689999999999952 2456678899999999 99999999999999999999888753
No 74
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=2.3e-20 Score=190.99 Aligned_cols=166 Identities=16% Similarity=0.243 Sum_probs=127.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|++.. ..+.+|++.+|. ...........++|||++|++.+..+...+ ++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~- 98 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPYYDNVRPLS----YP- 98 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE--EEEESSSSEEEEEEEEECCSGGGTTTGGGG----CT-
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE--EEEEECCEEEEEEEEeCCCcHhhhHHHHhh----cc-
Confidence 456899999999999999999999864 456788886653 222222223489999999999888777766 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++|+|||++++.++ +++ ..|+..+.+.. .++|++|||||+|+..
T Consensus 99 -~~d~~ilv~D~~~~~s~-~~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 99 -DSDAVLICFDISRPETL-DSVLKKWKGEIQEFC------------------------------PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------TTCEEEEEEECGGGGG
T ss_pred -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHC------------------------------CCCCEEEEEechhhcc
Confidence 59999999999999998 666 78888775532 1589999999999963
Q ss_pred CCC-------cchhhhhHHHHHHHHHHcC-CeEEEEecc-CCCCHHHHHHHHHHHHh
Q psy11649 190 NLE-------PNKKRIAVQCLRYLAHVNG-ASLLFHSSL-DPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d-------~e~r~~i~~~lr~la~~~G-a~l~etSAK-~~~nId~Lk~~I~~~lf 237 (890)
+.. ...+.+..+++++++..++ +.+++|||+ ++.|++++++.|...+.
T Consensus 147 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 110 0124456677899999988 689999999 68999999999988764
No 75
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=4.8e-20 Score=179.51 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=117.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
...++|+|+|++|||||||+++|+++. ..+.||++..+ ...... ...+++||+||++.+..+...+ ++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~----~~-- 73 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK---NLKFQVWDLGGLTSIRPYWRCY----YS-- 73 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET---TEEEEEEEECCCGGGGGGGGGG----CT--
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC---CEEEEEEECCCChhhhHHHHHH----hc--
Confidence 456899999999999999999998854 34567776432 222222 4489999999999888877766 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|+|++++.++ +.+..|+..+... ....++|+++|+||+|+....
T Consensus 74 ~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 74 NTDAVIYVVDSCDRDRI-GISKSELVAMLEE----------------------------EELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp TCSEEEEEEETTCCTTH-HHHHHHHHHHHTC----------------------------GGGTTCEEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCCHHHH-HHHHHHHHHHHhc----------------------------hhhCCCEEEEEEECCCCcCCC
Confidence 59999999999999998 6666666543221 111368999999999996321
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+ .+++........+...++++++|||+++.|++++++.|...+.
T Consensus 125 ~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 125 T--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp C--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred C--HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 1 1222222222233445778999999999999999999988763
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.84 E-value=3.6e-20 Score=187.26 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=118.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-hhhHHhhhhccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-RLEVASLFSSFSLT 109 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-~~~Li~~~r~~~~~ 109 (890)
..+||+|+|++|||||||+++|++.. ....+++|.++...... .......+.+|||+|+.. ...+...+ ++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Dt~~~~~~~~~~~~~~----~~ 79 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM-VDGESATIILLDMWENKGENEWLHDHC----MQ 79 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEE-ETTEEEEEEEECCCCC----CTTGGGH----HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEE-ECCeEEEEEEEEeccCcchhhhHHHhh----cc
Confidence 46899999999999999999999632 12335677775322221 122223788999999876 33344444 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
.++++|+|||++++.+| +.+..|...+.+.. ...++|+++|+||+|+..
T Consensus 80 --~~~~~i~v~dv~~~~s~-~~~~~~~~~l~~~~----------------------------~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 80 --VGDAYLIVYSITDRASF-EKASELRIQLRRAR----------------------------QTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp --HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHT----------------------------TTSCCCEEEEEECTTCGG
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhh----------------------------CCCCCeEEEEEechhhhc
Confidence 48999999999999998 78888887665431 112689999999999852
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+.+...+.+.++..+++.+++|||++|.|++++++.|...+.
T Consensus 129 -----~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 129 -----XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp -----GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHH
Confidence 4555566778888899999999999999999999999988763
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=6.8e-20 Score=183.47 Aligned_cols=174 Identities=11% Similarity=0.080 Sum_probs=122.3
Q ss_pred cCCccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649 30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSF 106 (890)
Q Consensus 30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~ 106 (890)
.......+|+|+|++|||||||+++|+++.. .+.+|++..+ .... .....++||||||++++..+...+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~--- 83 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE---KGRVAFTVFDMGGAKKFRGLWETY--- 83 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE---ETTEEEEEEEECCSGGGGGGGGGG---
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE---eCCEEEEEEECCCCHhHHHHHHHH---
Confidence 3456678999999999999999999999643 4578888442 2222 233489999999999998888777
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
++ ++|++|+|||++++.+| +.+..|+..+.+..... .......++|++||+||+|
T Consensus 84 -~~--~~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~piilv~NK~D 138 (199)
T 4bas_A 84 -YD--NIDAVIFVVDSSDHLRL-CVVKSEIQAMLKHEDIR---------------------RELPGGGRVPFLFFANKMD 138 (199)
T ss_dssp -CT--TCSEEEEEEETTCGGGH-HHHHHHHHHHHTSHHHH---------------------SBCTTSCBCCEEEEEECTT
T ss_pred -Hh--cCCEEEEEEECCcHHHH-HHHHHHHHHHHhChhhh---------------------hcccccCCCCEEEEEECcC
Confidence 22 59999999999999998 77777877654432110 0000112689999999999
Q ss_pred CCCCCCcchhhhhHH-HHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 187 LFENLEPNKKRIAVQ-CLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 187 l~~d~d~e~r~~i~~-~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+....+ ..+.... .+..++...++.+++|||+++.|++++++.|...+..
T Consensus 139 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 139 AAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp STTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 964211 1111111 1223335578899999999999999999999888743
No 78
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=190.15 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=112.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.+|++..|. ...........+.|||+||++.+..+...+ ++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~----~~- 104 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM--VNLQVKGKPVHLHIWDTAGQDDYDRLRPLF----YP- 104 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE--EEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEECCEEEEEEEEECCCchhhhHHHHHH----hc-
Confidence 347899999999999999999999863 456677765542 221111223379999999999888877776 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+. .|+..+.+.. .++|++||+||+|+..
T Consensus 105 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 105 -DASVLLLCFDVTSPNSF-DNIFNRWYPEVNHFC------------------------------KKVPIIVVGCKTDLRK 152 (214)
T ss_dssp -CEEEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------SSCCEEEEEECGGGGS
T ss_pred -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEEChhhhc
Confidence 59999999999999998 6664 7887765532 1589999999999963
Q ss_pred CCCcc-------hhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 190 NLEPN-------KKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 190 d~d~e-------~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+.... .+.+..++++.++..+|+ .+++|||++|.|++++++.|...+..
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 21000 124455678899999998 89999999999999999999888754
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=5.5e-20 Score=187.22 Aligned_cols=169 Identities=17% Similarity=0.215 Sum_probs=123.5
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
..+..+||+|+|++|||||||+++|+++. ..+.++++.++... .........+.||||||++.+..+...+ +
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~ 94 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD--IEVDGKQVELALWDTAGQEDYDRLRPLS----Y 94 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE--EEETTEEEEEEEEECTTCTTCTTTGGGG----C
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE--EEECCEEEEEEEEECCCcHHHHHHHHhh----c
Confidence 34567899999999999999999999864 35567877665322 2111122379999999999888777666 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
+ ++|++|+|||++++.++ +.+ ..|+..+.+.. .++|+++|+||+|+
T Consensus 95 ~--~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl 141 (207)
T 2fv8_A 95 P--DTDVILMCFSVDSPDSL-ENIPEKWVPEVKHFC------------------------------PNVPIILVANKKDL 141 (207)
T ss_dssp T--TCCEEEEEEETTCHHHH-HHHHHTHHHHHHHHS------------------------------TTCCEEEEEECGGG
T ss_pred C--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEEchhh
Confidence 2 59999999999999998 566 67887665532 15899999999999
Q ss_pred CCCCCcc-------hhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 188 FENLEPN-------KKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 188 ~~d~d~e-------~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
....... .+.+...+...++..+++ .+++|||++|.|++++++.|...++.
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred hccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 6321000 023456678889999998 89999999999999999999988754
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=4.6e-20 Score=178.72 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF 114 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad 114 (890)
+||+|+|++|||||||+++|+++. ..+.||++..+ ..... ....+++||+||++++..+...+ ++ ++|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~d 69 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHY----FQ--NTQ 69 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEEC---SSCEEEEEECCCCGGGHHHHHHH----TT--TCS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEEE---CCEEEEEEEcCCChhhHHHHHHH----hc--cCC
Confidence 489999999999999999998753 34567777432 22222 23489999999999988887776 22 599
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649 115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN 194 (890)
Q Consensus 115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e 194 (890)
++|+|+|++++.++ +.+..|+..+.... ...++|+++|+||+|+....+
T Consensus 70 ~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~nK~Dl~~~~~-- 118 (164)
T 1r8s_A 70 GLIFVVDSNDRERV-NEAREELMRMLAED----------------------------ELRDAVLLVFANKQDLPNAMN-- 118 (164)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTCEEEEEEECTTSTTCCC--
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHHHhch----------------------------hhcCCeEEEEEECcCCcCCCC--
Confidence 99999999999998 67777776443211 113589999999999953211
Q ss_pred hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.+........+...++++++|||+++.|++++++.|...+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 111111111112223456799999999999999999998775
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.82 E-value=6.8e-20 Score=186.60 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=122.0
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+++. ..+.++++..+. ...........++|||+||++.+..+...+ ++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~ 100 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTAGLEDYDRLRPLS----YP 100 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEE--EEEECC-CEEEEEEEEECCSGGGTTTGGGG----CT
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeE--EEEEECCEEEEEEEEECCCchhhHHHHHHH----hc
Confidence 3457999999999999999999999753 456677764432 222222223378899999999888777776 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
++|++|+|||++++.++ +.+. .|+..+.... .++|+++|+||+|+.
T Consensus 101 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 101 --QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLR 147 (204)
T ss_dssp --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------SSCCEEEEEECHHHH
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEechhhc
Confidence 59999999999999998 6664 7887666532 258999999999986
Q ss_pred CCCCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 189 ENLEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 189 ~d~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+... ..+.+..+++..++..+++ ++++|||++|.|++++++.|...+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 31100 0012556778889999987 499999999999999999987654
No 82
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=2.6e-20 Score=187.97 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=117.6
Q ss_pred cCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEec--cccceEEEEEEcCCCcchhhHH---hhhh
Q psy11649 30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGK--TVMKDICHLWELGSGTSRLEVA---SLFS 104 (890)
Q Consensus 30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~--~~~k~~l~IwDlpG~~~~~~Li---~~~r 104 (890)
......+||+|+|++|||||||+++++++.. ..+++++++........ ......++|||++|++++..+. ..+
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~- 92 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI- 92 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH-
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc-
Confidence 3456689999999999999999999888533 23666666432222211 1223489999999999987766 455
Q ss_pred ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649 105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK 184 (890)
Q Consensus 105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK 184 (890)
++ +++++|+|||+++. .+ +.+..|.+.+.+.... ..++|++|||||
T Consensus 93 ---~~--~~~~~i~v~d~~~~-~~-~~~~~~~~~l~~~~~~---------------------------~~~~piilv~nK 138 (196)
T 3llu_A 93 ---FR--GTGALIYVIDAQDD-YM-EALTRLHITVSKAYKV---------------------------NPDMNFEVFIHK 138 (196)
T ss_dssp ---HH--TCSEEEEEEETTSC-CH-HHHHHHHHHHHHHHHH---------------------------CTTCEEEEEEEC
T ss_pred ---cc--cCCEEEEEEECCCc-hH-HHHHHHHHHHHHHHhc---------------------------CCCCcEEEEEec
Confidence 22 49999999999997 22 4445544444332111 126899999999
Q ss_pred ccCCCCC--CcchhhhhHHHHHHHHH----HcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 185 YDLFENL--EPNKKRIAVQCLRYLAH----VNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 185 ~Dl~~d~--d~e~r~~i~~~lr~la~----~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+|+..+. ....+.+.......++. .+++.+++|||++ .|++++++.|.+.+
T Consensus 139 ~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 139 VDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 9985311 01245666777888888 7789999999999 99999998887754
No 83
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.82 E-value=2.7e-20 Score=186.09 Aligned_cols=162 Identities=16% Similarity=0.269 Sum_probs=116.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC----CCCCCCCccceeEEEEEEe--ccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK----NDTPKPTLALEYIYARKSG--KTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~----~~~~kptigvdY~f~~~~g--~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
.+||+|+|++|||||||+++|++. ...+.+|+|+++....... .......+++||++|++++..+...+ +
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~ 77 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHF----M 77 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHH----H
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHH----c
Confidence 479999999999999999999984 2356788888764322221 11123489999999998887777666 2
Q ss_pred ccccCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 109 TAQSGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
+ +++++++|||++++. ++ +.+..|+..+.+.. .++|+++||||+|+
T Consensus 78 ~--~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl 124 (184)
T 2zej_A 78 T--QRALYLAVYDLSKGQAEV-DAMKPWLFNIKARA------------------------------SSSPVILVGTHLDV 124 (184)
T ss_dssp H--HSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHC------------------------------TTCEEEEEEECGGG
T ss_pred c--CCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhC------------------------------CCCcEEEEEECCCc
Confidence 2 489999999999984 66 78888988765431 15899999999998
Q ss_pred CCCCCcchhhh---hHHHHHHHHHHcCCe----EEEEeccCCC-CHHHHHHHHHHHHhc
Q psy11649 188 FENLEPNKKRI---AVQCLRYLAHVNGAS----LLFHSSLDPG-LVKRTRDILNHYAFS 238 (890)
Q Consensus 188 ~~d~d~e~r~~---i~~~lr~la~~~Ga~----l~etSAK~~~-nId~Lk~~I~~~lf~ 238 (890)
.. .+.. .......++..+|++ +++|||+++. ++++|++.|...+..
T Consensus 125 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 125 SD-----EKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp CC-----HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred cc-----chhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 52 3332 234556777778886 9999999997 999999999887743
No 84
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=1.1e-20 Score=194.00 Aligned_cols=163 Identities=14% Similarity=0.138 Sum_probs=125.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....+||+|+|++|||||||+++|+.+ ...+.++++.++....... ......++||||||++.+..+...+ ++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~ 86 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGY----YI 86 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHH----HT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHH----Hh
Confidence 445799999999999999999996653 3455677776654322221 2223489999999998887777666 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
+++++|+|||++++.++ +.+..|+..+.+... ++|+++|+||+|+..
T Consensus 87 --~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 87 --QAQCAIIMFDVTSRVTY-KNVPNWHRDLVRVCE------------------------------NIPIVLCGNKVDIKD 133 (221)
T ss_dssp --TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHST------------------------------TCCEEEEEECTTSSS
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC------------------------------CCCEEEEEECCcccc
Confidence 59999999999999998 888889887766421 589999999999863
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
.. . ......++..+++.+++|||+++.|++++++.|...+...
T Consensus 134 ~~------~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 134 RK------V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp CS------S-CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred cc------c-cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 21 1 1244567788899999999999999999999999988653
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=180.77 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG 113 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a 113 (890)
.++|+|+|++|||||||+++|+++.. .+.||++..+. .... .+..+++||+||++++..+...+ ++ ++
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~ 84 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVI---NNTRFLMWDIGGQESLRSSWNTY----YT--NT 84 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEE---TTEEEEEEECCC----CGGGHHH----HT--TC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--CC
Confidence 68999999999999999999997533 45567764422 2221 23589999999999888877766 22 59
Q ss_pred cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649 114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP 193 (890)
Q Consensus 114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~ 193 (890)
|++|+|+|+++++++ +.+..|+..+.+.. ...++|+++|+||+|+....+
T Consensus 85 d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~~~- 134 (187)
T 1zj6_A 85 EFVIVVVDSTDRERI-SVTREELYKMLAHE----------------------------DLRKAGLLIFANKQDVKECMT- 134 (187)
T ss_dssp CEEEEEEETTCTTTH-HHHHHHHHHHHTSG----------------------------GGTTCEEEEEEECTTSTTCCC-
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHHHHHhch----------------------------hhCCCeEEEEEECCCCcCCCC-
Confidence 999999999999998 77777776554321 113689999999999963211
Q ss_pred chhhhhHHHHHHHH-----HHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 194 NKKRIAVQCLRYLA-----HVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 194 e~r~~i~~~lr~la-----~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+++.+.. ...++.+++|||++|.|++++++.|...+..
T Consensus 135 ------~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 135 ------VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp ------HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 11222221 2346789999999999999999999988743
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=1.1e-19 Score=181.90 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=116.8
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
....++|+|+|++|||||||+++|+++. ..+.+|++.++. .... ....++|||+||++++..+...+ ++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~~ 89 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK---GNVTIKLWDIGGQPRFRSMWERY----CR 89 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE---TTEEEEEEEECCSHHHHTTHHHH----HT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe---CCEEEEEEECCCCHhHHHHHHHH----Hc
Confidence 3457999999999999999999999864 356788887653 2222 23489999999999888777776 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|+|++++.++ +.+..|+..+.+. ....++|++||+||+|+..
T Consensus 90 --~~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 90 --GVSAIVYMVDAADQEKI-EASKNELHNLLDK----------------------------PQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp --TCSEEEEEEETTCGGGH-HHHHHHHHHHHTC----------------------------GGGTTCCEEEEEECTTSTT
T ss_pred --cCCEEEEEEECCCHHHH-HHHHHHHHHHHhC----------------------------cccCCCCEEEEEECCCCcc
Confidence 59999999999999998 6777776544321 1123689999999999963
Q ss_pred CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..+ ..+.........+...++.+++|||+++.|++++++.|...+
T Consensus 139 ~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 139 ALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred CCC--HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 211 111111111111223456899999999999999999988765
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=1.8e-19 Score=181.39 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=112.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
+..+|+++|++|||||||+++|+++. ..+.+|++..+ ..... .+..+++|||||++.+..+...+ ++ +
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ 90 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAI---GNIKFTTFDLGGHIQARRLWKDY----FP--E 90 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEE---TTEEEEEEECCCSGGGTTSGGGG----CT--T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEE---CCEEEEEEECCCCHHHHHHHHHH----Hh--c
Confidence 35799999999999999999999854 35566777542 12221 12589999999999888777666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|+|++++.++ +.+..|+..+.+.. ...++|+++|+||+|+..
T Consensus 91 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~--- 138 (190)
T 1m2o_B 91 VNGIVFLVDAADPERF-DEARVELDALFNIA----------------------------ELKDVPFVILGNKIDAPN--- 138 (190)
T ss_dssp CCEEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTCCEEEEEECTTSTT---
T ss_pred CCEEEEEEECCChHHH-HHHHHHHHHHHcch----------------------------hhcCCCEEEEEECCCCcC---
Confidence 9999999999999998 77777776553311 113689999999999953
Q ss_pred cchhhhhHHHHHHHHH------------HcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAH------------VNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~------------~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
....+++++.+. ..++.+++|||++|.|++++++.|..
T Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 139 ----AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp ----CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ----CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 122333444432 24568999999999999999988864
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=1.2e-19 Score=184.08 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=109.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
+..+|+++|++|||||||+++|+++. ..+.||++..+. .... .+..+++|||||++.+..+...+ ++ +
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ 92 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTI---AGMTFTTFDLGGHIQARRVWKNY----LP--A 92 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEE---TTEEEEEEEECC----CCGGGGG----GG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEE---CCEEEEEEECCCcHhhHHHHHHH----Hh--c
Confidence 35799999999999999999999853 345567765432 2221 12589999999999888877766 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|+|++++.++ +.+..|+..+.+.. ...++|+++|+||+|+..
T Consensus 93 ~d~~i~v~D~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~--- 140 (198)
T 1f6b_A 93 INGIVFLVDCADHERL-LESKEELDSLMTDE----------------------------TIANVPILILGNKIDRPE--- 140 (198)
T ss_dssp CSEEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTSCEEEEEECTTSTT---
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHhCc----------------------------ccCCCcEEEEEECCCccc---
Confidence 9999999999999998 77777876554311 113689999999999952
Q ss_pred cchhhhhHHHHHHHHHH-----------------cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLRYLAHV-----------------NGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~-----------------~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
....+++++++.. .++.+++|||++|.|++++++.|...
T Consensus 141 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 141 ----AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ----cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 2233445555442 34679999999999999999888653
No 89
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=5.1e-18 Score=193.83 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch---------hhHHhhh
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR---------LEVASLF 103 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~---------~~Li~~~ 103 (890)
.+|+|||.||||||||+|+|+++. ....|+++.++.+..... .+..+++|||||++.. ......+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW---YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE---TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE---CCeEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 379999999999999999999863 234467776655433332 1236899999998642 2222223
Q ss_pred hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
++ ++|++|+|+|.++..+..+ .+..|++ + .++|+++|+
T Consensus 79 ----~~--~ad~il~V~D~~~~~~~~d~~i~~~l~---~--------------------------------~~~p~ilv~ 117 (439)
T 1mky_A 79 ----IR--EADLVLFVVDGKRGITKEDESLADFLR---K--------------------------------STVDTILVA 117 (439)
T ss_dssp ----HT--TCSEEEEEEETTTCCCHHHHHHHHHHH---H--------------------------------HTCCEEEEE
T ss_pred ----HH--hCCEEEEEEECCCCCCHHHHHHHHHHH---H--------------------------------cCCCEEEEE
Confidence 22 5999999999998766411 2222222 1 158999999
Q ss_pred ecccCCCCCCcchhhhhHHHH-HHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 183 GKYDLFENLEPNKKRIAVQCL-RYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 183 NK~Dl~~d~d~e~r~~i~~~l-r~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
||+|+. .. . ...+ ..++ .+|+ .++++||++|.|++++++.|...+
T Consensus 118 NK~D~~------~~-~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 118 NKAENL------RE-F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp ESCCSH------HH-H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred eCCCCc------cc-c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 999984 11 1 1222 3444 4676 689999999999999999998776
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.81 E-value=1.1e-19 Score=183.39 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=110.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
....++|+|+|++|||||||+++|+++.. .+.||++.. ...... ....+++||+||++++..+...+ ++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~- 95 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY---KNICFTVWDVGGQDKIRPLWRHY----FQ- 95 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEE---TTEEEEEEECC-----CTTHHHH----HH-
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEE---CCEEEEEEECCCCHhHHHHHHHH----hc-
Confidence 34578999999999999999999987643 345666632 222222 23489999999999888777666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|+|++++.++ +.+..|+..+.+.. ...++|+++|+||+|+...
T Consensus 96 -~~d~iilv~D~~~~~s~-~~~~~~l~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 96 -NTQGLIFVVDSNDRERV-QESADELQKMLQED----------------------------ELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -TCCEEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTCEEEEEEECTTSTTC
T ss_pred -cCCEEEEEEECCCHHHH-HHHHHHHHHHhccc----------------------------ccCCCeEEEEEECCCCCCC
Confidence 49999999999999998 77777776543211 1135899999999999532
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+ .+++........+...++++++|||++|.|++++++.|...+
T Consensus 146 ~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 146 MP--VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp CC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CC--HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 11 111111111112223456799999999999999999998775
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.81 E-value=9.8e-20 Score=180.99 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=112.3
Q ss_pred cCCccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
....+.++|+|+|++|||||||+++|+++.. .+.+|++..+. .... .+..+.+||+||++++..+...+ +
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~ 86 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVI---NNTRFLMWDIGGQESLRSSWNTY----Y 86 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEE---TTEEEEEEEESSSGGGTCGGGGG----G
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEE---CCEEEEEEECCCCHhHHHHHHHH----h
Confidence 3455679999999999999999999998653 45567765432 2221 23589999999999888777766 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|+|++++.++ +.+..|+..+.+.. ...++|+++|+||+|+.
T Consensus 87 ~--~~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 87 T--NTEFVIVVVDSTDRERI-SVTREELYKMLAHE----------------------------DLRKAGLLIFANKQDVK 135 (181)
T ss_dssp T--TCCEEEEEEETTCTTTH-HHHHHHHHHHHTCG----------------------------GGTTCEEEEEEECTTST
T ss_pred c--cCCEEEEEEECCCHHHH-HHHHHHHHHHHhCh----------------------------hhCCCeEEEEEECCCcc
Confidence 2 59999999999999998 77777776443211 12368999999999996
Q ss_pred CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
...+ ..++........+...++.+++|||+++.|++++++.|..
T Consensus 136 ~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 136 ECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp TCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred cCCC--HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 3211 1111111000111234668999999999999999888764
No 92
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=1.2e-19 Score=207.26 Aligned_cols=149 Identities=16% Similarity=0.116 Sum_probs=89.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCc--------chhhHHhhh
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT--------SRLEVASLF 103 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~--------~~~~Li~~~ 103 (890)
..+|+|+|.+|||||||+|+|++... ...++++.+..+.... . .+..+.+|||||+. .+......+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~--~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAE--W-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECT--T-CSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEE--E-CCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 35899999999999999999998532 2234555453322221 1 12379999999985 333333333
Q ss_pred hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
++ ++|++|+|+|.++..+.. ..|+. +.+ ...++|+++|+|
T Consensus 80 ----~~--~ad~il~vvD~~~~~~~~---d~~~~---~~l----------------------------~~~~~pvilv~N 119 (436)
T 2hjg_A 80 ----MD--EADVIIFMVNGREGVTAA---DEEVA---KIL----------------------------YRTKKPVVLAVN 119 (436)
T ss_dssp ----HH--HCSEEEEEEETTTCSCHH---HHHHH---HHH----------------------------TTCCSCEEEEEE
T ss_pred ----HH--hCCEEEEEEeCCCCCCHH---HHHHH---HHH----------------------------HHcCCCEEEEEE
Confidence 22 499999999999987751 22222 111 123689999999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+|+... +. .+.++. .+|. .++++||++|.|+++|++.|...+
T Consensus 120 K~D~~~~-----~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 120 KLDNTEM-----RA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp CCCC--------------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CccCccc-----hh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 9998531 11 111122 3455 689999999999999999998765
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=178.33 Aligned_cols=160 Identities=14% Similarity=0.202 Sum_probs=115.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL 108 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~ 108 (890)
....++|+|+|++|||||||+++|++.. ..+.+|++.. ....... +..+.+|||||++.+..+...+ +
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~----~ 88 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSS---SLSFTVFDMSGQGRYRNLWEHY----Y 88 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECS---SCEEEEEEECCSTTTGGGGGGG----G
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEEC---CEEEEEEECCCCHHHHHHHHHH----H
Confidence 4557899999999999999999999854 3556777632 2222221 3489999999999988887766 2
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ++|++|+|+|++++.++ +.+..|+..+.+... ....++|+++|+||+|+.
T Consensus 89 ~--~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------------~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 89 K--EGQAIIFVIDSSDRLRM-VVAKEELDTLLNHPD--------------------------IKHRRIPILFFANKMDLR 139 (190)
T ss_dssp G--GCSEEEEEEETTCHHHH-HHHHHHHHHHHHSTT--------------------------TTTSCCCEEEEEECTTST
T ss_pred h--cCCEEEEEEECCCHHHH-HHHHHHHHHHHhChh--------------------------hccCCCeEEEEEeCcCcc
Confidence 2 59999999999999887 677777765543210 011368999999999996
Q ss_pred CCCCcchhhhhHHHHHHHHH-----HcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 189 ENLEPNKKRIAVQCLRYLAH-----VNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~-----~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
... ..+++.+.+. ..++.+++|||+++.|++++++.|...+
T Consensus 140 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 140 DAV-------TSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp TCC-------CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred cCC-------CHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 321 1223333332 2367899999999999999999998775
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.80 E-value=3.2e-19 Score=177.26 Aligned_cols=157 Identities=19% Similarity=0.210 Sum_probs=115.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
..++|+|+|++|||||||+++|+++. ..+.||++.. ...... ....+++|||||++++..+...+ ++ +
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~---~~~~~~~~Dt~G~~~~~~~~~~~----~~--~ 85 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEH---RGFKLNIWDVGGQKSLRSYWRNY----FE--S 85 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEE---TTEEEEEEEECCSHHHHTTGGGG----CT--T
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--C
Confidence 46899999999999999999999864 3556777743 222222 24589999999998887777666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|+|++++.++ +.+..|+..+.+.. ...++|+++|+||+|+....+
T Consensus 86 ~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~nK~Dl~~~~~ 136 (186)
T 1ksh_A 86 TDGLIWVVDSADRQRM-QDCQRELQSLLVEE----------------------------RLAGATLLIFANKQDLPGALS 136 (186)
T ss_dssp CSEEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTCEEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECcCHHHH-HHHHHHHHHHHhCh----------------------------hcCCCcEEEEEeCccCCCCCC
Confidence 9999999999999998 77777776443311 123689999999999963211
Q ss_pred cchhhhhHHHHH-HHH----HHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLR-YLA----HVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr-~la----~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
..++. .+. ...++++++|||+++.|++++++.|.+.+.
T Consensus 137 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 137 -------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp -------HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111 111 234678999999999999999999988874
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=1.9e-19 Score=179.65 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=112.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
..++|+++|++|||||||+++|++... .+.||+|.. ...... ....+++||+||++.+..+...+ ++ +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~---~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ 83 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQS---QGFKLNVWDIGGQRKIRPYWRSY----FE--N 83 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEE---TTEEEEEEECSSCGGGHHHHHHH----HT--T
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEE---CCEEEEEEECCCCHHHHHHHHHH----hC--C
Confidence 468999999999999999999998643 345666632 212221 14589999999999988887776 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|+|+++++++ +.+..|+..+.+. ....++|+++|+||+|+.....
T Consensus 84 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~NK~Dl~~~~~ 134 (181)
T 1fzq_A 84 TDILIYVIDSADRKRF-EETGQELTELLEE----------------------------EKLSCVPVLIFANKQDLLTAAP 134 (181)
T ss_dssp CSEEEEEEETTCGGGH-HHHHHHHHHHTTC----------------------------GGGTTCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECcCHHHH-HHHHHHHHHHHhC----------------------------hhhcCCCEEEEEECcCcccCCC
Confidence 9999999999999998 6677776543221 1123689999999999963211
Q ss_pred cchhhhhHHHHH-HH----HHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 193 PNKKRIAVQCLR-YL----AHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 193 ~e~r~~i~~~lr-~l----a~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+++. .+ +...++.+++|||++|.|++++++.|...+
T Consensus 135 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 135 -------ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp -------HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred -------HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 11111 11 122356799999999999999999988765
No 96
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.79 E-value=1.9e-21 Score=196.49 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=117.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++.. .+.++++.++........ .....+.|||+||++.+..+...+ ++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~----~~- 104 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSY----YR- 104 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET-TEEEEEEEECCTTCTTCCCCSCC------C-
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHH----hh-
Confidence 4568999999999999999999998643 445777777654333321 122379999999998887776666 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+..|+..+... ...++|++||+||+|+..
T Consensus 105 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~-----------------------------~~~~~p~ilv~nK~Dl~~- 152 (199)
T 3l0i_B 105 -GAHGIIVVYDVTDQESF-NNVKQWLQEIDRY-----------------------------ASENVNKLLVGNKCDLTT- 152 (199)
T ss_dssp -CCSEEEECC-CCCSHHH-HHHHHHHHHHHSC-----------------------------C-CCSEEEEC-CCSSCC--
T ss_pred -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHh-----------------------------ccCCCCEEEEEECccCCc-
Confidence 59999999999999998 7888888766432 123689999999999853
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+......++.++..+++++++|||+++.|++++++.|...+
T Consensus 153 ----~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 153 ----KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp -----CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred ----cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 333334457788999999999999999999999998887654
No 97
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=4.7e-20 Score=198.01 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=110.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH----------Hh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV----------AS 101 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L----------i~ 101 (890)
+.++|+|+|++|||||||+|+|++... ...|+++++......... ...+.+|||||++++..+ ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT---DHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS---SCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC---CCceEEEECcCCCccccccccCCHHHHHHH
Confidence 468999999999999999999999642 334777777443333221 237899999999876522 22
Q ss_pred hhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEE
Q psy11649 102 LFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILI 181 (890)
Q Consensus 102 ~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVV 181 (890)
.+ +...++|++|+|+|.+++++. ..|...+.+ .++|+++|
T Consensus 79 ~~----~~~~~~d~ii~VvD~~~~~~~----~~~~~~l~~--------------------------------~~~p~ivv 118 (274)
T 3i8s_A 79 HY----ILSGDADLLINVVDASNLERN----LYLTLQLLE--------------------------------LGIPCIVA 118 (274)
T ss_dssp HH----HHHTCCSEEEEEEEGGGHHHH----HHHHHHHHH--------------------------------HTCCEEEE
T ss_pred HH----HhhcCCCEEEEEecCCChHHH----HHHHHHHHh--------------------------------cCCCEEEE
Confidence 22 100159999999999986543 333333322 15899999
Q ss_pred eecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 182 GGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 182 gNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+||+|+.. ..........++..+|+++++|||++|.|++++++.|...+
T Consensus 119 ~NK~Dl~~------~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 119 LNMLDIAE------KQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp EECHHHHH------HTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred EECccchh------hhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999852 22223346778889999999999999999999999987765
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.79 E-value=2.1e-19 Score=179.29 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=114.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
+.++|+|+|++|||||||+++|+++.. .+.||++..+ ..... ....+++|||||++++..+...+ ++ +
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~Dt~G~~~~~~~~~~~----~~--~ 89 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQY---KNISFEVWDLGGQTGVRPYWRCY----FS--D 89 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEE---TTEEEEEEEECCSSSSCCCCSSS----ST--T
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEE---CCEEEEEEECCCCHhHHHHHHHH----hh--c
Confidence 468999999999999999999987543 4567777442 22222 23489999999998877766655 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|+|++++.++ +.+..|+..+... ....++|+++|+||+|+....+
T Consensus 90 ~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~nK~Dl~~~~~ 140 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRM-GVAKHELYALLDE----------------------------DELRKSLLLIFANKQDLPDAAS 140 (189)
T ss_dssp CCEEEEEEETTCCTTH-HHHHHHHHHHHTC----------------------------STTTTCEEEEEEECTTSTTCCC
T ss_pred CCEEEEEEeCCCHHHH-HHHHHHHHHHHhh----------------------------hhcCCCeEEEEEECCCCcCCCC
Confidence 9999999999999998 6666666543221 1123689999999999963211
Q ss_pred cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.+++........+...++++++|||+++.|++++++.|...+.
T Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 141 --EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp --HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 1111111111222334668999999999999999999988774
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.79 E-value=6.9e-19 Score=172.77 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=107.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhh-h
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLF-S 104 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~-r 104 (890)
..++|+|+|++|||||||+++|++.. ..+.|++++++....... ....+++|||||++++. .+...+ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NGEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE---TTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE---CCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 35799999999999999999999853 233466666543322221 13479999999998763 344444 2
Q ss_pred ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649 105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK 184 (890)
Q Consensus 105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK 184 (890)
. .+++++++|+|.++.+ .+..|+..+.+ .++|+++|+||
T Consensus 79 ~-----~~~~~~i~v~D~~~~~----~~~~~~~~~~~--------------------------------~~~p~ilv~nK 117 (165)
T 2wji_A 79 N-----EKPDLVVNIVDATALE----RNLYLTLQLME--------------------------------MGANLLLALNK 117 (165)
T ss_dssp H-----HCCSEEEEEEETTCHH----HHHHHHHHHHH--------------------------------TTCCEEEEEEC
T ss_pred c-----CCCCEEEEEecCCchh----HhHHHHHHHHh--------------------------------cCCCEEEEEEc
Confidence 1 1489999999999853 34456654432 15899999999
Q ss_pred ccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 185 YDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 185 ~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+|+.. .+.+. .+.+.++..+|+++++|||++|.|++++++.|...+
T Consensus 118 ~Dl~~-----~~~~~-~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 118 MDLAK-----SLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHH-----HTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred hHhcc-----ccChh-hHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 99842 22221 246778888999999999999999999999987764
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.79 E-value=1.8e-18 Score=188.74 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=120.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-----hhHHhhh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-----LEVASLF 103 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-----~~Li~~~ 103 (890)
..+||+|+|++|||||||+++|+++. ..+.+|++.++. .... .+...++||||||++++ ..+...+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRF--LGNMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEE--TTTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEe--CCceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 36899999999999999999999862 245667776653 2221 12458999999999887 3444444
Q ss_pred hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
++ ++|++|+|||++++.++ +++..|.+.+.+.... ..++|+++|||
T Consensus 78 ----~~--~ad~vi~V~D~t~~~s~-~~l~~~~~~l~~l~~~---------------------------~~~~piilv~N 123 (307)
T 3r7w_A 78 ----FQ--MVQVLIHVFDVESTEVL-KDIEIFAKALKQLRKY---------------------------SPDAKIFVLLH 123 (307)
T ss_dssp ----HT--TCSEEEEEEETTCSCHH-HHHHHHHHHHHHHHHH---------------------------CTTCEEEEEEE
T ss_pred ----hc--cCCEEEEEEECCChhhH-HHHHHHHHHHHHHHHh---------------------------CCCCeEEEEEe
Confidence 23 59999999999999998 8888887766554321 12589999999
Q ss_pred cccCCCCCCcchhh----hhHHHHHHHHHHcC---CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 184 KYDLFENLEPNKKR----IAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 184 K~Dl~~d~d~e~r~----~i~~~lr~la~~~G---a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+|+.. .+++. +..+++++++..+| +++++|||++ .++.+++..+.+.+
T Consensus 124 K~Dl~~---~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 124 KMDLVQ---LDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CGGGSC---HHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred cccccc---hhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 999962 22454 77788999999998 7899999999 67777665555443
No 101
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.78 E-value=3.6e-18 Score=172.70 Aligned_cols=163 Identities=20% Similarity=0.286 Sum_probs=124.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++|+|+|++|||||||+++|++.. ..+.|+++.++........ .....+.+||++|++.+..+...+ ++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~----~~-- 76 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGQERYRRITSAY----YR-- 76 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-TEEEEEEEEECSSGGGTTCCCHHH----HT--
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHH----Hh--
Confidence 36899999999999999999999963 3566888877643333221 112378999999998877766666 12
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++++|+|++++.++ +++..|+..+.... ....|+++|+||+|+..
T Consensus 77 ~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~i~~v~nK~Dl~~-- 124 (199)
T 2f9l_A 77 GAVGALLVYDIAKHLTY-ENVERWLKELRDHA-----------------------------DSNIVIMLVGNKSDLRH-- 124 (199)
T ss_dssp TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCGG--
T ss_pred cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCeEEEEEECccccc--
Confidence 48999999999999887 77778877654321 12579999999999852
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.+......++.++...++.+++|||+++.|++++++.|...+..
T Consensus 125 ---~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 125 ---LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp ---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34445567889999999999999999999999999999888754
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=4.9e-19 Score=174.89 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=109.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS 112 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ 112 (890)
..++|+|+|++|||||||+++|+++. ..+.+|++..+ ..... ....+.+||+||++++..+...+ ++ +
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ 85 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSY---KNLKLNVWDLGGQTSIRPYWRCY----YA--D 85 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEE---TTEEEEEEEEC----CCTTGGGT----TT--T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--c
Confidence 47899999999999999999999753 34557777442 12221 23589999999998887776666 22 5
Q ss_pred CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649 113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE 192 (890)
Q Consensus 113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d 192 (890)
+|++|+|+|++++.++ +.+..|+..+.+. ....++|+++|+||+|+....+
T Consensus 86 ~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~nK~Dl~~~~~ 136 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRM-STASKELHLMLQE----------------------------EELQDAALLVFANKQDQPGALS 136 (183)
T ss_dssp EEEEEEEEETTCTTTH-HHHHHHHHHHTTS----------------------------STTSSCEEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHHHHHcC----------------------------hhhCCCeEEEEEECCCCCCCCC
Confidence 9999999999999998 6677776543221 1123689999999999953211
Q ss_pred cchhhhhHHHHHHHH-----HHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 193 PNKKRIAVQCLRYLA-----HVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 193 ~e~r~~i~~~lr~la-----~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
..++.+.. ...++++++|||+++.|++++++.|...+.
T Consensus 137 -------~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 137 -------ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp -------HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 11222221 123457999999999999999999988763
No 103
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=3.1e-18 Score=185.48 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=125.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++|+++|++|||||||+++|+++. ..+.+|++..+. ...........+++||+||++.+..+...+ ++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-- 225 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTAGLEDYDRLRPLS----YP-- 225 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE--EEEEETTEEEEEEEEEECCCGGGTTTGGGG----CT--
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE--EEEEECCEEEEEEEEeCCCchhhhHHHHHh----cc--
Confidence 35899999999999999999999753 456677775543 222112223378899999999888777766 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.++ +.+. .|+..+..... ++|+++|+||+|+..+
T Consensus 226 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------------------~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 226 QTDVFLICFSLVSPASF-HHVRAKWYPEVRHHCP------------------------------NTPIILVGTKLDLRDD 274 (332)
T ss_dssp TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT------------------------------TSCEEEEEECHHHHTC
T ss_pred CCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhhCC------------------------------CCcEEEEEEchhcccc
Confidence 59999999999999998 5555 68776654321 5899999999998531
Q ss_pred CCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 191 LEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 191 ~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
... ..+.+..+++..++..+++ ++++|||++|.|++++++.|...++
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 000 0145667788999999997 8999999999999999999988774
No 104
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=1.7e-19 Score=192.08 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh----------HHhhh
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE----------VASLF 103 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~----------Li~~~ 103 (890)
.+|+|+|++|||||||+|+|++... ...|+++++........ .+..+.+|||||++++.. +...+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL---GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE---TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE---CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 4799999999999999999999632 23477887754333222 223799999999987753 33333
Q ss_pred hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649 104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG 183 (890)
Q Consensus 104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN 183 (890)
+...++|++|+|+|.+++++. ..+..|+ ...++|+++|+|
T Consensus 79 ----~~~~~~d~vi~VvDas~~~~~-~~l~~~l-----------------------------------~~~~~pvilv~N 118 (256)
T 3iby_A 79 ----VIDLEYDCIINVIDACHLERH-LYLTSQL-----------------------------------FELGKPVVVALN 118 (256)
T ss_dssp ----HHHSCCSEEEEEEEGGGHHHH-HHHHHHH-----------------------------------TTSCSCEEEEEE
T ss_pred ----HhhCCCCEEEEEeeCCCchhH-HHHHHHH-----------------------------------HHcCCCEEEEEE
Confidence 100259999999999996553 1222111 123789999999
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
|+|+.. ..........++..+|+++++|||++|.|++++++.|...
T Consensus 119 K~Dl~~------~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 119 MMDIAE------HRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CHHHHH------HTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ChhcCC------cCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 999852 2223334667888899999999999999999999988765
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.76 E-value=9.9e-18 Score=170.69 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=104.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~ 111 (890)
..+||+|+|++|||||||+++|+++.. ...++++.++. ...........++||||||++++.. +...+ ++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~----~~-- 77 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRF----KS-- 77 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHH----GG--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHH----Hh--
Confidence 468999999999999999999998642 22245554543 2222211134899999999998877 66666 22
Q ss_pred cCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 112 SGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
+++++|+|+|+++.. ++......|.+.+.... ....++|++||+||+|+...
T Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM---------------------------ALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH---------------------------TSTTCCEEEEEEECTTSTTC
T ss_pred hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh---------------------------hcccCCCEEEEEECCCCCCc
Confidence 499999999999854 33223333443332211 11236899999999999642
Q ss_pred CCcchhhhhHHHHHHHHH---------------------------------Hc--CCeEEEEeccCC------CCHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAH---------------------------------VN--GASLLFHSSLDP------GLVKRTR 229 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~---------------------------------~~--Ga~l~etSAK~~------~nId~Lk 229 (890)
.. ...+.+.+.+... .+ ++.+++|||++| .|+++++
T Consensus 131 ~~---~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf 207 (214)
T 2fh5_B 131 KS---AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLE 207 (214)
T ss_dssp CC---HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHH
T ss_pred cc---HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHH
Confidence 21 1111222221111 11 677999999999 9999999
Q ss_pred HHHHHH
Q psy11649 230 DILNHY 235 (890)
Q Consensus 230 ~~I~~~ 235 (890)
++|...
T Consensus 208 ~~l~~~ 213 (214)
T 2fh5_B 208 KWLAKI 213 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 106
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.63 E-value=3.3e-20 Score=187.87 Aligned_cols=165 Identities=19% Similarity=0.186 Sum_probs=121.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
...+||+|+|++|||||||+++|+++. ..+.+|++..+.. ..........+++||+||++++..+...+ ++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~- 100 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTAGQEDYDRLRPLS----YP- 100 (204)
Confidence 457899999999999999999999753 3455666644321 11111122378899999999888777766 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|||++++.++ +.+. .|+..+.... .++|+++|+||+|+..
T Consensus 101 -~~d~iilv~D~~~~~s~-~~~~~~~~~~l~~~~------------------------------~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 101 -QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLRD 148 (204)
Confidence 59999999999999998 5554 7776554321 1589999999999963
Q ss_pred CCCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 190 NLEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 190 d~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+... ..+.+..++++.++..+++ ++++|||++|.|++++++.|...+
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 2110 0124556778888999998 899999999999999998887654
No 107
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.76 E-value=8.4e-18 Score=169.57 Aligned_cols=161 Identities=21% Similarity=0.288 Sum_probs=124.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
..++|+|+|++|||||||+++|++.. ..+.+|++.++........ .....+++||++|++++..++..+ ++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~----~~-- 100 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGLERYRAITSAY----YR-- 100 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEET-TEEEEEEEEEECSCCSSSCCCHHH----HT--
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCCCcchhhhhHHH----hh--
Confidence 46899999999999999999999863 4567888887653333221 112367889999998877766665 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
+++++++|+|+++..++ +++..|+..+.+.. ....|+++|+||+|+..
T Consensus 101 ~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~i~~v~nK~Dl~~-- 148 (191)
T 1oix_A 101 GAVGALLVYDIAKHLTY-ENVERWLKELRDHA-----------------------------DSNIVIMLVGNKSDLRH-- 148 (191)
T ss_dssp TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGG--
T ss_pred cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccccc--
Confidence 47899999999999887 77778887654421 12579999999999842
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+......++.++...++.+++|||+++.|++++++.|...+
T Consensus 149 ---~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 149 ---LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 344456678899999999999999999999999999988765
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=184.97 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=116.3
Q ss_pred CCccceEEEEEcCC---------CCCHHHHHHHHHcC-----CCCCCCCc-cceeEEEEE----------Ee---ccccc
Q psy11649 31 IQSQERTLLLIGTK---------SVGKSTLVFRFLEK-----NDTPKPTL-ALEYIYARK----------SG---KTVMK 82 (890)
Q Consensus 31 ~~~~e~kIvLVGd~---------nvGKSSLInrL~~~-----~~~~kpti-gvdY~f~~~----------~g---~~~~k 82 (890)
.....+||+|+|++ |||||||+++|+++ ...+.+|+ +++|..... .+ .....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35567999999999 99999999999983 23455665 555421100 00 11122
Q ss_pred eEEEEEE-----------------------cCCCcchhhHHhhh-h-ccccc-------------cccCcEEEEEEeCCC
Q psy11649 83 DICHLWE-----------------------LGSGTSRLEVASLF-S-SFSLT-------------AQSGFTLVLMLDLSR 124 (890)
Q Consensus 83 ~~l~IwD-----------------------lpG~~~~~~Li~~~-r-~~~~~-------------~~~ad~IIIV~DlSn 124 (890)
..++||| ++|++++..+...+ + .+..- ..++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 3799999 55555555444444 2 00000 004899999999999
Q ss_pred c--CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHH
Q psy11649 125 L--NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQC 202 (890)
Q Consensus 125 p--~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~ 202 (890)
+ .+| +.+..|+..+.+.... .++|++||+||+|+. +.+.+ .+
T Consensus 175 ~~~~s~-~~~~~~l~~i~~~~~~----------------------------~~~piilV~NK~Dl~-----~~~~v--~~ 218 (255)
T 3c5h_A 175 GMNRNF-DDQLKFVSNLYNQLAK----------------------------TKKPIVVVLTKCDEG-----VERYI--RD 218 (255)
T ss_dssp ----CH-HHHHHHHHHHHHHHHH----------------------------TTCCEEEEEECGGGB-----CHHHH--HH
T ss_pred CchhhH-HHHHHHHHHHHHHhcc----------------------------CCCCEEEEEEccccc-----ccHHH--HH
Confidence 8 898 8889999887765221 158999999999984 23443 57
Q ss_pred HHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 203 LRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 203 lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++.++.. .++++++|||+++.|++++++.|...+
T Consensus 219 ~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 219 AHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 7888877 489999999999999999999987765
No 109
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=2.7e-18 Score=183.02 Aligned_cols=153 Identities=18% Similarity=0.093 Sum_probs=112.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh------HHhhh-h
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE------VASLF-S 104 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~------Li~~~-r 104 (890)
..++|+|+|++|||||||+|+|++... ...|+++++........ ....+.+|||||++++.. +...+ .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY---KGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE---TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE---CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 468999999999999999999998532 23367776643222222 234899999999987743 33344 2
Q ss_pred ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649 105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK 184 (890)
Q Consensus 105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK 184 (890)
. .++|++|+|+|.+++++. ..|...+. ..++|+++|+||
T Consensus 81 ~-----~~~d~ii~V~D~t~~~~~----~~~~~~l~--------------------------------~~~~pvilv~NK 119 (258)
T 3a1s_A 81 K-----GDADLVILVADSVNPEQS----LYLLLEIL--------------------------------EMEKKVILAMTA 119 (258)
T ss_dssp H-----SCCSEEEEEEETTSCHHH----HHHHHHHH--------------------------------TTTCCEEEEEEC
T ss_pred h-----cCCCEEEEEeCCCchhhH----HHHHHHHH--------------------------------hcCCCEEEEEEC
Confidence 1 149999999999997653 23443322 126899999999
Q ss_pred ccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 185 YDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 185 ~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+|+. ....+..+..+++..+|+++++|||++|.|++++++.|.+.+
T Consensus 120 ~Dl~------~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 120 IDEA------KKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp HHHH------HHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCC------CccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 9985 222222357889999999999999999999999999998875
No 110
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=8.6e-18 Score=192.88 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=89.1
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCC--------CcchhhHH
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGS--------GTSRLEVA 100 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG--------~~~~~~Li 100 (890)
.+...+|+|+|.+|||||||+|+|+++.. ...++++.+..+... . .....+.|||||| +..+....
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~--~-~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--E-WLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC--T-TCSSCCEEECCCC------CCHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE--E-ECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 45567999999999999999999998532 222444444222111 1 1223799999999 44444455
Q ss_pred hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649 101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180 (890)
Q Consensus 101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV 180 (890)
..+ +. ++|++|+|+|.++.-+. ...|+.. .+ ...++|+++
T Consensus 97 ~~~----~~--~ad~il~VvD~~~~~~~---~d~~l~~---~l----------------------------~~~~~pvil 136 (456)
T 4dcu_A 97 EIA----MD--EADVIIFMVNGREGVTA---ADEEVAK---IL----------------------------YRTKKPVVL 136 (456)
T ss_dssp HHH----HH--HCSEEEEEEESSSCSCH---HHHHHHH---HH----------------------------TTCCSCEEE
T ss_pred Hhh----Hh--hCCEEEEEEeCCCCCCh---HHHHHHH---HH----------------------------HHcCCCEEE
Confidence 444 22 49999999998875552 2233221 11 123689999
Q ss_pred EeecccCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+||+|+.. .+. ....+. .+|. ..+++||++|.|++++.+.+...+
T Consensus 137 V~NK~D~~~-----~~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 137 AVNKLDNTE-----MRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp EEECC------------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred EEECccchh-----hhh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence 999999852 110 111111 2232 467999999999999988886654
No 111
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=1.5e-18 Score=170.34 Aligned_cols=159 Identities=10% Similarity=-0.011 Sum_probs=106.2
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT 109 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~ 109 (890)
.....+|+|+|++|||||||+++|++... .+.++++.++....... .+..+.+|||||++++..+...+ +.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~~ 77 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV---NDKKITFLDTPGHEAFTTMRARG----AQ 77 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE---TTEEEEESCCCSSSSSSCSCCSS----CC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe---CCceEEEEECCCCHHHHHHHHHH----Hh
Confidence 34578999999999999999999998642 34456665543322221 22378999999998877665544 22
Q ss_pred cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649 110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~ 189 (890)
++|++|+|+|++++... ..+ +.+.... ..++|+++|+||+|+..
T Consensus 78 --~~d~~i~v~d~~~~~~~-~~~----~~l~~~~-----------------------------~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 78 --VTDIVILVVAADDGVMP-QTV----EAINHAK-----------------------------AANVPIIVAINKMDKPE 121 (178)
T ss_dssp --CCCEEEEEEETTCCCCH-HHH----HHHHHHG-----------------------------GGSCCEEEEEETTTSSC
T ss_pred --hCCEEEEEEECCCCCcH-HHH----HHHHHHH-----------------------------hCCCCEEEEEECccCCc
Confidence 58999999999986542 222 2222111 12589999999999963
Q ss_pred CCCcchhhhhHHHH---HHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 190 NLEPNKKRIAVQCL---RYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 190 d~d~e~r~~i~~~l---r~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
. ........+ ..++..++ +++++|||+++.|++++++.|...+.
T Consensus 122 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 122 A----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp S----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 1 111111111 11222333 58999999999999999999988764
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=4.9e-18 Score=168.71 Aligned_cols=156 Identities=16% Similarity=0.097 Sum_probs=114.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhh
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLF 103 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~ 103 (890)
.+..++|+|+|++|||||||+++|++.. ....++++.++....... ....+++|||||++.+. .+...+
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NGEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE---TTEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe---CCcEEEEEECCCcCccccccHHHHHHHHH
Confidence 4567899999999999999999999853 233466676644333222 23479999999998763 344444
Q ss_pred -hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 104 -SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 104 -r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
+. .+++++++|+|.++. +.+..|+..+.+ .++|+++|+
T Consensus 81 ~~~-----~~~~~~i~v~d~~~~----~~~~~~~~~~~~--------------------------------~~~piilv~ 119 (188)
T 2wjg_A 81 IIN-----EKPDLVVNIVDATAL----ERNLYLTLQLME--------------------------------MGANLLLAL 119 (188)
T ss_dssp HHH-----HCCSEEEEEEEGGGH----HHHHHHHHHHHT--------------------------------TTCCEEEEE
T ss_pred Hhc-----cCCCEEEEEecchhH----HHHHHHHHHHHh--------------------------------cCCCEEEEE
Confidence 21 138999999998863 455566654322 258999999
Q ss_pred ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
||+|+.. .+. ....++.++..+|+++++|||+++.|++++++.|...+.
T Consensus 120 nK~Dl~~-----~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 120 NKMDLAK-----SLG-IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp ECHHHHH-----HTT-CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred Ehhhccc-----ccc-chHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 9999852 222 224567888889999999999999999999999988874
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.75 E-value=1.7e-17 Score=171.73 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=107.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCc------c----hhhHH
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGT------S----RLEVA 100 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~------~----~~~Li 100 (890)
...++|+|+|++|||||||+++|+++... ..+..+.++.+.... .....+.||||||+. . +..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFD---HKLNKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEE---ETTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeee---cCCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 45789999999999999999999986431 122223232211111 123479999999983 2 22222
Q ss_pred hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649 101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180 (890)
Q Consensus 101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV 180 (890)
..+ . .+|++|+|+|++++.++ .+..|...+...... ..++|+++
T Consensus 104 ~~~-----~--~~d~~i~v~d~~~~~s~--~~~~~~~~~~~l~~~---------------------------~~~~piil 147 (228)
T 2qu8_A 104 ALA-----H--INGVILFIIDISEQCGL--TIKEQINLFYSIKSV---------------------------FSNKSIVI 147 (228)
T ss_dssp HHH-----T--SSEEEEEEEETTCTTSS--CHHHHHHHHHHHHTC---------------------------C-CCCEEE
T ss_pred Hhh-----c--cccEEEEEEecccccCc--chHHHHHHHHHHHHh---------------------------hcCCcEEE
Confidence 111 1 37999999999999887 344443333221110 12589999
Q ss_pred EeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
|+||+|+..... ........++.++...+ +.+++|||++|.|++++++.|...+..
T Consensus 148 v~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 148 GFNKIDKCNMDS--LSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EEECGGGCC--C--CCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCcccCCchh--hHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 999999963111 11122345777888888 899999999999999999999888743
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=9.7e-18 Score=166.29 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=105.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSFS 107 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~~ 107 (890)
..+|+|+|++|||||||+++|++... ...++++.++....... .+..+++|||||+.++....... ....
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI---DGMPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE---TTEEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE---CCeEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 47999999999999999999998532 33456666653322221 12368999999987542211110 0011
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
++ ++|++++|+|++++.++ + ...|+..+.+.. ..++|+++|+||+|+
T Consensus 81 ~~--~ad~~i~v~D~~~~~s~-~-~~~~~~~~~~~~-----------------------------~~~~p~ilv~NK~Dl 127 (172)
T 2gj8_A 81 IE--QADRVLFMVDGTTTDAV-D-PAEIWPEFIARL-----------------------------PAKLPITVVRNKADI 127 (172)
T ss_dssp HH--TCSEEEEEEETTTCCCC-S-HHHHCHHHHHHS-----------------------------CTTCCEEEEEECHHH
T ss_pred HH--hCCEEEEEEECCCCCCH-H-HHHHHHHHHHhc-----------------------------ccCCCEEEEEECccC
Confidence 22 59999999999999997 3 456766554421 126899999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
... .. .++...++.+++|||+++.|++++++.|...+
T Consensus 128 ~~~----~~--------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 128 TGE----TL--------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp HCC----CC--------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred Ccc----hh--------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 421 00 11223467899999999999999999998775
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.73 E-value=8e-17 Score=160.02 Aligned_cols=160 Identities=12% Similarity=0.096 Sum_probs=111.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCC----------CcchhhHH
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGS----------GTSRLEVA 100 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG----------~~~~~~Li 100 (890)
....++|+|+|++|||||||+++|++.. ..+.++.+..+...... . ...+.+||||| +..+..+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--V--NSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--E--TTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--E--CCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 4567899999999999999999999864 33334444332211111 1 12588999999 55566666
Q ss_pred hhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE
Q psy11649 101 SLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI 179 (890)
Q Consensus 101 ~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI 179 (890)
..+ +.. ..++++++|+|.++..+. ....+...+.. .++|++
T Consensus 96 ~~~~~~~----~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~p~i 137 (195)
T 3pqc_A 96 EDYFKNR----WSLQMVFLLVDGRIPPQD--SDLMMVEWMKS--------------------------------LNIPFT 137 (195)
T ss_dssp HHHHHHC----TTEEEEEEEEETTSCCCH--HHHHHHHHHHH--------------------------------TTCCEE
T ss_pred HHHHhcC----cCceEEEEEecCCCCCCH--HHHHHHHHHHH--------------------------------cCCCEE
Confidence 666 320 136999999999987653 21222221111 158999
Q ss_pred EEeecccCCCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 180 LIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 180 VVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+|+||+|+.. .+.+....+.++.++..++ +++++|||+++.|++++++.|...+
T Consensus 138 ~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 138 IVLTKMDKVK---MSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp EEEECGGGSC---GGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEChhcCC---hHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 9999999963 3356666677888888754 7899999999999999999998876
No 116
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.73 E-value=5.8e-18 Score=182.05 Aligned_cols=151 Identities=18% Similarity=0.149 Sum_probs=110.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhh-hc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLF-SS 105 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~-r~ 105 (890)
.++|+|+|++|||||||+|+|++.. ....|+++++.. .+.......+++|||||++++. .+...+ +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~----~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK----SGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE----EEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEE----EEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 5799999999999999999999853 223366776632 2211113379999999999875 445555 21
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
.++|++|+|+|+++.++ ...|...+.+ .++|+++|+||+
T Consensus 79 -----~~~d~vi~V~D~t~~e~----~~~~~~~l~~--------------------------------~~~p~ilv~NK~ 117 (272)
T 3b1v_A 79 -----QRADSILNVVDATNLER----NLYLTTQLIE--------------------------------TGIPVTIALNMI 117 (272)
T ss_dssp -----TCCSEEEEEEEGGGHHH----HHHHHHHHHH--------------------------------TCSCEEEEEECH
T ss_pred -----CCCCEEEEEecCCchHh----HHHHHHHHHh--------------------------------cCCCEEEEEECh
Confidence 14999999999998644 2345543322 268999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+.. .+ .+......++..+|+++++|||++|.|++++++.|...+
T Consensus 118 Dl~~-----~~-~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 118 DVLD-----GQ-GKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HHHH-----HT-TCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred hhCC-----cC-CcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 9852 22 222456788899999999999999999999999987754
No 117
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.73 E-value=4.8e-18 Score=186.84 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh---HHhhhhcccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE---VASLFSSFSL 108 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~---Li~~~r~~~~ 108 (890)
||+++|+.|||||||++++.++.. .+.||+|+++.. . + ...+++||||+|+++|.. +...| |
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v-~---~~v~LqIWDTAGQErf~~~~l~~~~y----y 70 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F-S---TLIDLAVMELPGQLNYFEPSYDSERL----F 70 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E-C---SSSCEEEEECCSCSSSCCCSHHHHHH----H
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E-c---cEEEEEEEECCCchhccchhhhhhhh----c
Confidence 689999999999999999887522 357899988642 2 1 224799999999999864 35566 3
Q ss_pred ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ +++++|+|||+++. .+ +.+..|.+.+.+.... ..++|+++||||+|+.
T Consensus 71 r--~a~~~IlV~Ditd~-~~-~~~~~l~~~l~~~~~~---------------------------~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 71 K--SVGALVYVIDSQDE-YI-NAITNLAMIIEYAYKV---------------------------NPSINIEVLIHKVDGL 119 (331)
T ss_dssp T--TCSEEEEECCCSSC-TT-HHHHHHHHHHHHHHHH---------------------------CTTCEEEEECCCCCSS
T ss_pred c--CCCEEEEEEECCch-HH-HHHHHHHHHHHHHhhc---------------------------CCCCcEEEEEECcccC
Confidence 3 59999999999998 33 5555554433322111 1258999999999996
Q ss_pred CCCC--cchhhhhHHHHHHHHHH----cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 189 ENLE--PNKKRIAVQCLRYLAHV----NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 189 ~d~d--~e~r~~i~~~lr~la~~----~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.. ...|++..++.+++|.. +++.+++|||++ .|+.+.+..|.+.+
T Consensus 120 ~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 120 SEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp CSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred chhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 3100 00266777888888886 789999999998 58888877776655
No 118
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=186.26 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=109.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
.+.++|+|+|++|||||||+++|+++.. ...||++..+ ..... ....++||||||++.+..+...+ ++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~--~~~~~---~~~~l~i~Dt~G~~~~~~~~~~~----~~-- 231 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHY----FQ-- 231 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEE--EEEEE---TTEEEEEEECC-----CCSHHHH----HT--
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEE--EEEec---CcEEEEEEECCCCHhHHHHHHHH----hc--
Confidence 3557999999999999999999998643 2346666553 23322 23479999999999988887777 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|++|+|||++++.++ +.+..|+..+... ....++|++||+||+|+....
T Consensus 232 ~ad~vilV~D~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 232 NTQGLIFVVDSNDRERV-NEAREELMRMLAE----------------------------DELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp TEEEEEEEEETTCSSSH-HHHHHHHHHHHTC----------------------------GGGTTCEEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCchHHH-HHHHHHHHHHHhh----------------------------hccCCCeEEEEEECccCCccc
Confidence 49999999999999998 6666665433221 112368999999999996321
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+ ..++........+...++++++|||++|.|++++++.|...+.
T Consensus 283 ~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 283 N--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp C--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred C--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 1 1111111111112223567999999999999999999988763
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.73 E-value=1.4e-17 Score=165.03 Aligned_cols=153 Identities=15% Similarity=0.188 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCC-----------CcchhhHHhh
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGS-----------GTSRLEVASL 102 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG-----------~~~~~~Li~~ 102 (890)
+||+|+|++|||||||+++|++... .+.|+++.+... .. .. .+.+||||| ++.+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~--~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IE--WK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EE--ET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--Ee--cC---CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999999643 445665544321 11 11 589999999 4555556555
Q ss_pred hhcccccccc-CcEEEEEEeCCCcCchHHHHHHHHHH--------HHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 103 FSSFSLTAQS-GFTLVLMLDLSRLNSLWTEAETFLAK--------FRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 103 ~r~~~~~~~~-ad~IIIV~DlSnp~S~~~~L~~wlq~--------I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
+ ++ + ++++++|+|+++..++.+.+..|... +.... ..
T Consensus 75 ~----~~--~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~ 120 (190)
T 2cxx_A 75 F----IE--DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL----------------------------RE 120 (190)
T ss_dssp H----HH--HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH----------------------------HH
T ss_pred H----HH--hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH----------------------------Hh
Confidence 5 11 2 56677777777788873334777652 11111 12
Q ss_pred CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe-------EEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-------LLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~-------l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.++|+++|+||+|+.. .+ .+.+++++..+|++ +++|||++|.|++++++.|...+.
T Consensus 121 ~~~piilv~nK~Dl~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIK-----NV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp TTCCEEEEEECGGGCS-----CH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCceEEEeehHhccC-----cH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 3689999999999952 22 45678888888874 799999999999999999988764
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.73 E-value=2.7e-17 Score=158.41 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-------hhHHhhhhc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-------LEVASLFSS 105 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-------~~Li~~~r~ 105 (890)
+||+++|++|||||||+++|++... ...++.+.++....... .+..+.+||+||...+ ......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~-- 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET---DRGRFLLVDTGGLWSGDKWEKKIQEKVDRA-- 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE---TTEEEEEEECGGGCSSSSCCHHHHHHHHHH--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe---CCceEEEEECCCCCCccchHHHHHHHHHHH--
Confidence 5899999999999999999998642 23344444433222222 1237999999998763 2222222
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
++ +++++|+|+|++++.+. .-..+.+.+.+ .++|+++|+||+
T Consensus 77 --~~--~~~~~i~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~p~ilv~nK~ 118 (161)
T 2dyk_A 77 --LE--DAEVVLFAVDGRAELTQ--ADYEVAEYLRR--------------------------------KGKPVILVATKV 118 (161)
T ss_dssp --TT--TCSEEEEEEESSSCCCH--HHHHHHHHHHH--------------------------------HTCCEEEEEECC
T ss_pred --HH--hCCEEEEEEECCCcccH--hHHHHHHHHHh--------------------------------cCCCEEEEEECc
Confidence 22 59999999999997663 21222222211 158999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+... + +.+++++ .+|+ ++++|||+++.|++++++.|...+
T Consensus 119 Dl~~~-----~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 119 DDPKH-----E----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CSGGG-----G----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ccccc-----h----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 99631 1 2334455 6777 799999999999999999887653
No 121
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.8e-17 Score=191.55 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=115.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA 110 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~ 110 (890)
....+||+|+|++|||||||+++|+++.. .+.||++..+ ..... ....+.||||+|++.+..+...+ ++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~--~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~~- 388 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTY---KNVKFNVWDVGGQDKIRPLWRHY----YT- 388 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEES---SSCEEEEEEECCCGGGSGGGGGG----GT-
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeE--EEEEe---CCEEEEEEECCCcHHHHHHHHHH----hc-
Confidence 34578999999999999999999998643 4456777553 23332 23489999999999998887766 22
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
++|++|+|||++++.+| +.+..|+..+.+.. ...++|++||+||+|+...
T Consensus 389 -~ad~~i~V~D~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 389 -GTQGLIFVVDCADRDRI-DEARQELHRIINDR----------------------------EMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp -TCCEEEEEEETTCGGGH-HHHHHHHHHHHTSG----------------------------GGTTCEEEEEEECCSSSSC
T ss_pred -cCCEEEEEEECcchhHH-HHHHHHHHHHhhhh----------------------------hcCCCcEEEEEECCCCCcC
Confidence 59999999999999998 77777776543211 1136899999999999632
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+ .++........++...++.+++|||++|.|++++++.|...+
T Consensus 439 ~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 439 MK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp CC--HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CC--HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 111111101111122345699999999999999999998876
No 122
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.72 E-value=6.2e-17 Score=161.67 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=101.6
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCC----------CcchhhH
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGS----------GTSRLEV 99 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG----------~~~~~~L 99 (890)
....++|+|+|.+|||||||+++|+++. ..+.++.+..+....... . ..+.+||||| ++.+..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--N--DELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--T--TTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--C--CcEEEEECCCCCccccCHHHHHHHHHH
Confidence 3457899999999999999999999864 233344332221111111 1 1599999999 6666666
Q ss_pred Hhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649 100 ASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL 178 (890)
Q Consensus 100 i~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi 178 (890)
...+ +.. ..++++++|+|++++.++ ..+ .+...+.+ .++|+
T Consensus 96 ~~~~~~~~----~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~--------------------------------~~~p~ 137 (195)
T 1svi_A 96 IETYITTR----EELKAVVQIVDLRHAPSN-DDV-QMYEFLKY--------------------------------YGIPV 137 (195)
T ss_dssp HHHHHHHC----TTEEEEEEEEETTSCCCH-HHH-HHHHHHHH--------------------------------TTCCE
T ss_pred HHHHHhhh----hcCCEEEEEEECCCCCCH-HHH-HHHHHHHH--------------------------------cCCCE
Confidence 6666 320 124899999999998886 222 12221111 25899
Q ss_pred EEEeecccCCCCCCcchhhhhHHHHHH-HHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 179 ILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~-la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|+||+|+.. ........+.+++ ++...++.+++|||+++.|++++++.|...+
T Consensus 138 i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 138 IVIATKADKIP---KGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEEECGGGSC---GGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEECcccCC---hHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 99999999963 1112112233333 4434578999999999999999999998765
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=1.8e-17 Score=177.08 Aligned_cols=155 Identities=18% Similarity=0.146 Sum_probs=112.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh------HHhhhhc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE------VASLFSS 105 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~------Li~~~r~ 105 (890)
..++|+|+|++|||||||+|+|++... ...+++++++....... .+..+.+|||||++++.. +...+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-- 76 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY---REKEFLVVDLPGIYSLTAHSIDELIARNF-- 76 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE---TTEEEEEEECCCCSCCCSSCHHHHHHHHH--
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE---CCceEEEEeCCCccccccCCHHHHHHHHh--
Confidence 468999999999999999999998642 34477777744322222 223699999999987754 44444
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC-CcEEEEeec
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP-VPLILIGGK 184 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~-IPiIVVgNK 184 (890)
+...++|++|+|+|.++.++ ++..|.+ +.+ .+ +|+++|+||
T Consensus 77 --~~~~~~d~vi~v~D~~~~~~---~~~~~~~-~~~--------------------------------~~~~p~ilv~NK 118 (271)
T 3k53_A 77 --ILDGNADVIVDIVDSTCLMR---NLFLTLE-LFE--------------------------------MEVKNIILVLNK 118 (271)
T ss_dssp --HHTTCCSEEEEEEEGGGHHH---HHHHHHH-HHH--------------------------------TTCCSEEEEEEC
T ss_pred --hhccCCcEEEEEecCCcchh---hHHHHHH-HHh--------------------------------cCCCCEEEEEEC
Confidence 10124999999999998633 3333332 211 14 899999999
Q ss_pred ccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 185 YDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 185 ~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+|+. .+.........++..+|+++++|||++|.|++++++.|...+-
T Consensus 119 ~Dl~------~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 119 FDLL------KKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp HHHH------HHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred hhcC------cccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 9985 2222333477888899999999999999999999999988863
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=2.7e-17 Score=167.97 Aligned_cols=154 Identities=17% Similarity=0.133 Sum_probs=104.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSF 106 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~ 106 (890)
....+|+|+|++|||||||+++|++... .+.++++.+| ....+++||+||++.+...+..+ +..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 3468999999999999999999998642 2445555443 23379999999999988777777 321
Q ss_pred ccccccCcEEEEEEeCC-CcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 107 SLTAQSGFTLVLMLDLS-RLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlS-np~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
.. .++++|+|+|++ ++.++ ..+..|+..+...... ....++|+++|+||+
T Consensus 80 ~~---~~~~~i~v~D~~~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~ilv~nK~ 130 (218)
T 1nrj_B 80 AK---FVKGLIFMVDSTVDPKKL-TTTAEFLVDILSITES-------------------------SCENGIDILIACNKS 130 (218)
T ss_dssp GG---GEEEEEEEEETTSCTTCC-HHHHHHHHHHHHHHHH-------------------------HSTTCCCEEEEEECT
T ss_pred cc---cCCEEEEEEECCCChHHH-HHHHHHHHHHHhcccc-------------------------cccCCCCEEEEEEch
Confidence 11 279999999999 88888 7777787766543321 012368999999999
Q ss_pred cCCCCCC-cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCH
Q psy11649 186 DLFENLE-PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLV 225 (890)
Q Consensus 186 Dl~~d~d-~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nI 225 (890)
|+..... .+.++.+..++..++...++.++++||+++.+-
T Consensus 131 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 131 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEED 171 (218)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 9964222 112334466778888888899999999998763
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.69 E-value=3.2e-17 Score=191.70 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=113.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEE----Ee--c-cccceEEEEEEcCCCcchhhHHhh
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARK----SG--K-TVMKDICHLWELGSGTSRLEVASL 102 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~----~g--~-~~~k~~l~IwDlpG~~~~~~Li~~ 102 (890)
....+||+|+|++|||||||+++|++.. ..+.+|+|.++..... .. . ......+.|||+||++.+..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4567999999999999999999999864 4667888877542110 11 1 111348999999999988887777
Q ss_pred hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 103 ~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
+ ++ +++++|+|+|+++.+ .+..|+..+.+... ++|++||+
T Consensus 118 ~----l~--~~d~ii~V~D~s~~~----~~~~~~~~l~~~~~------------------------------~~pvilV~ 157 (535)
T 3dpu_A 118 F----MT--RSSVYMLLLDSRTDS----NKHYWLRHIEKYGG------------------------------KSPVIVVM 157 (535)
T ss_dssp H----HH--SSEEEEEEECGGGGG----GHHHHHHHHHHHSS------------------------------SCCEEEEE
T ss_pred H----cc--CCcEEEEEEeCCCch----hHHHHHHHHHHhCC------------------------------CCCEEEEE
Confidence 6 21 499999999998763 55778877765321 48999999
Q ss_pred ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
||+|+.. .+....+.++.++...++++++|||++|.|++++++.|...+.
T Consensus 158 NK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 158 NKIDENP-----SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp CCTTTCT-----TCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHT
T ss_pred ECCCccc-----ccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHh
Confidence 9999953 3444567788888889999999999999999999999998874
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.69 E-value=3.5e-16 Score=159.98 Aligned_cols=162 Identities=14% Similarity=0.174 Sum_probs=105.7
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC----CCCCCccceeEEEEEEeccccceEEEEEEcCCC----------cchh
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND----TPKPTLALEYIYARKSGKTVMKDICHLWELGSG----------TSRL 97 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~----------~~~~ 97 (890)
.....+|+|+|.+|||||||+|+|+++.. ...++.+.+..+... .......+.||||||. +.+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSV--GPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEE--SCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEe--cCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34578999999999999999999998641 222333433322221 1122347999999994 3345
Q ss_pred hHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 98 EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 98 ~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
.+...+ +. . ..+|++|+|+|.++..+. ....|++.+.+ .++
T Consensus 104 ~~~~~~~~~--~--~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~--------------------------------~~~ 145 (223)
T 4dhe_A 104 QLLSSYLQT--R--PQLCGMILMMDARRPLTE--LDRRMIEWFAP--------------------------------TGK 145 (223)
T ss_dssp HHHHHHHHH--C--TTEEEEEEEEETTSCCCH--HHHHHHHHHGG--------------------------------GCC
T ss_pred HHHHHHHhc--C--cCcCEEEEEEeCCCCCCH--HHHHHHHHHHh--------------------------------cCC
Confidence 555555 22 1 137899999999986553 33344433221 268
Q ss_pred cEEEEeecccCCCCCCcchhhhhHHHHHH-HHHH------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 177 PLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHV------NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~-la~~------~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+++|+||+|+.. ..........+++ +... .++++++|||+++.|++++++.|...+
T Consensus 146 p~i~v~nK~Dl~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 146 PIHSLLTKCDKLT---RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp CEEEEEECGGGSC---HHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEeccccCC---hhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 9999999999963 1111112222233 3332 567899999999999999999999887
No 127
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.68 E-value=8.3e-16 Score=167.76 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=116.7
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh----------
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL---------- 97 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~---------- 97 (890)
+.+..-.|+++|.+|||||||+|+|++... ...++.+.+....... .....++.+|||||+....
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~--~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKN--IPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEe--cCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 455667899999999999999999999642 3344444332211111 1114489999999986543
Q ss_pred hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc
Q psy11649 98 EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP 177 (890)
Q Consensus 98 ~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP 177 (890)
.....+ +. ++|++++|+|+++..+. .....|++.+.+ .++|
T Consensus 84 ~~~~~~----l~--~aD~il~VvD~~~~~~~-~~~~~~~~~l~~--------------------------------~~~p 124 (308)
T 3iev_A 84 EIAKQS----LE--EADVILFMIDATEGWRP-RDEEIYQNFIKP--------------------------------LNKP 124 (308)
T ss_dssp HHHHHH----HH--HCSEEEEEEETTTBSCH-HHHHHHHHHTGG--------------------------------GCCC
T ss_pred HHHHHH----hh--cCCEEEEEEeCCCCCCc-hhHHHHHHHHHh--------------------------------cCCC
Confidence 222222 22 59999999999999887 566666654322 2689
Q ss_pred EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 178 LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 178 iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+++|+||+|+.. .+......+..++..++ +.++++||++|.|++++++.|...+..
T Consensus 125 vilV~NK~Dl~~-----~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 125 VIVVINKIDKIG-----PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEEEEECGGGSS-----SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEEEECccCCC-----CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999999852 34455677888888886 789999999999999999999988743
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.67 E-value=2.6e-16 Score=179.60 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=114.6
Q ss_pred CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEec
Q psy11649 2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGK 78 (890)
Q Consensus 2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~ 78 (890)
|.++|.+.+.+.+.+..... .....++|+|+|.+|||||||+|+|++... ...++++.+........
T Consensus 151 gv~~L~~~i~~~l~~~~~~~---------~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~- 220 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKNIPETK---------YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY- 220 (436)
T ss_dssp THHHHHHHHHHTGGGCCSSC---------CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-
T ss_pred ChHHHHHHHHHhcCcccccc---------ccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-
Confidence 45677888877765322100 123468999999999999999999998642 33466665543222211
Q ss_pred cccceEEEEEEcCCC----------cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhh
Q psy11649 79 TVMKDICHLWELGSG----------TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNES 148 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~----------~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~ 148 (890)
.+..+.||||||+ +.+..+.... .++ ++|++|+|+|++++.++ .+ ..|...+.+
T Consensus 221 --~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~---~~~--~ad~~llv~D~~~~~s~-~~-~~~~~~~~~------- 284 (436)
T 2hjg_A 221 --NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK---AID--RSEVVAVVLDGEEGIIE-QD-KRIAGYAHE------- 284 (436)
T ss_dssp --TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH---HHH--HCSEEEEEEETTTCCCH-HH-HHHHHHHHH-------
T ss_pred --CCeEEEEEECCCcCcCccccchHHHHHHHHHHH---HHH--hCCEEEEEEcCCcCCcH-HH-HHHHHHHHH-------
Confidence 2236999999997 3333332211 112 49999999999999887 33 345554322
Q ss_pred hhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHH
Q psy11649 149 VREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~L 228 (890)
.++|+++|+||+|+.........+...+..+.++...++++++|||++|.|++++
T Consensus 285 -------------------------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 285 -------------------------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL 339 (436)
T ss_dssp -------------------------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGH
T ss_pred -------------------------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHH
Confidence 2689999999999963211000111122223333345789999999999999999
Q ss_pred HHHHHHHHh
Q psy11649 229 RDILNHYAF 237 (890)
Q Consensus 229 k~~I~~~lf 237 (890)
++.+...+.
T Consensus 340 ~~~i~~~~~ 348 (436)
T 2hjg_A 340 MPAIIKASE 348 (436)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987764
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.64 E-value=9.6e-16 Score=175.86 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=115.9
Q ss_pred CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649 2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK 78 (890)
Q Consensus 2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~ 78 (890)
|.++|.+.+.+.+....... ......+|+++|.+|||||||+|+|++.. ....++++.++.......
T Consensus 171 gv~~L~~~i~~~l~~~~~~~---------~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~- 240 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNIPETK---------YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY- 240 (456)
T ss_dssp THHHHHHHHHTTGGGSCSSC---------CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-
T ss_pred chHHHHHHHHhhcccccccc---------cccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-
Confidence 44567777766554322111 12346899999999999999999999753 233455565532222221
Q ss_pred cccceEEEEEEcCC----------CcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhh
Q psy11649 79 TVMKDICHLWELGS----------GTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNES 148 (890)
Q Consensus 79 ~~~k~~l~IwDlpG----------~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~ 148 (890)
.+..+.|||||| ++.+..+.... .++ .+|++|+|+|.++..+ +....|...+.+
T Consensus 241 --~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~---~~~--~ad~~llviD~~~~~~--~~~~~~~~~~~~------- 304 (456)
T 4dcu_A 241 --NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK---AID--RSEVVAVVLDGEEGII--EQDKRIAGYAHE------- 304 (456)
T ss_dssp --TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH---HHH--HCSEEEEEEETTTCCC--HHHHHHHHHHHH-------
T ss_pred --CCceEEEEECCCCCcCcccchHHHHHHHHHHHH---HHh--hCCEEEEEEeCCCCcC--HHHHHHHHHHHH-------
Confidence 223799999999 56665554432 011 3899999999998766 344455544332
Q ss_pred hhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-----CCeEEEEeccCCC
Q psy11649 149 VREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-----GASLLFHSSLDPG 223 (890)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-----Ga~l~etSAK~~~ 223 (890)
.++|++||+||+|+.. .+....+++.+.+... ++++++|||++|.
T Consensus 305 -------------------------~~~~~ilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 354 (456)
T 4dcu_A 305 -------------------------AGKAVVIVVNKWDAVD-----KDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 354 (456)
T ss_dssp -------------------------TTCEEEEEEECGGGSC-----CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred -------------------------cCCCEEEEEEChhcCC-----CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence 2689999999999963 2222233344444433 5899999999999
Q ss_pred CHHHHHHHHHHHHh
Q psy11649 224 LVKRTRDILNHYAF 237 (890)
Q Consensus 224 nId~Lk~~I~~~lf 237 (890)
|++++++.|...+.
T Consensus 355 gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 355 RIHTLMPAIIKASE 368 (456)
T ss_dssp TGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988763
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.60 E-value=4.2e-15 Score=171.66 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=91.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF 106 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~ 106 (890)
..++|+|+|.+|||||||+|+|++.+ ....++++.++....... .+..+.+|||||+..+...+..+ ...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~---~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH---DKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE---TTEEEEEEC--------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE---CCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 35789999999999999999999863 233466666643222221 23479999999998776555442 122
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
.++ ++|++|+|+|.+++.++ +.+..+.+.+.. +. ++|+++|+||+|
T Consensus 309 ~~~--~aD~vl~VvD~s~~~s~-~~~~~~~~~l~~-----------------------------l~--~~piIvV~NK~D 354 (476)
T 3gee_A 309 KMA--EADLILYLLDLGTERLD-DELTEIRELKAA-----------------------------HP--AAKFLTVANKLD 354 (476)
T ss_dssp CCS--SCSEEEEEEETTTCSSG-GGHHHHHHHHHH-----------------------------CT--TSEEEEEEECTT
T ss_pred hcc--cCCEEEEEEECCCCcch-hhhHHHHHHHHh-----------------------------cC--CCCEEEEEECcC
Confidence 233 69999999999999886 333333322111 11 589999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.. .... ..+.++.....++++|||+++.|++++++.|...+
T Consensus 355 l~~-----~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 355 RAA-----NADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp SCT-----TTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred CCC-----ccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 963 2221 11344444337899999999999999999998876
No 131
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.59 E-value=9.5e-15 Score=159.15 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=100.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF 106 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~ 106 (890)
+..+|+|+|.+|||||||+|+|++... ...|+.+.+...... ...+.++.+|||||.......+..+ ...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~---~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL---TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE---EETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE---EeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456799999999999999999999643 234444433211111 1224489999999987632211111 111
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHH-HHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFL-AKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wl-q~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
.++ ++|++++|+|++++.+. ...|+ +.+++. ..++|+++|+||+
T Consensus 83 ~l~--~ad~il~VvD~~~~~~~---~~~~i~~~l~~~------------------------------~~~~p~ilV~NK~ 127 (301)
T 1wf3_A 83 ALA--DVNAVVWVVDLRHPPTP---EDELVARALKPL------------------------------VGKVPILLVGNKL 127 (301)
T ss_dssp HTS--SCSEEEEEEETTSCCCH---HHHHHHHHHGGG------------------------------TTTSCEEEEEECG
T ss_pred HHh--cCCEEEEEEECCCCCCh---HHHHHHHHHHhh------------------------------cCCCCEEEEEECc
Confidence 133 69999999999998664 23333 222110 0258999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+.. .+......++.+ ...+.++++||++|.|++++++.|...+
T Consensus 128 Dl~~-----~~~~~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 128 DAAK-----YPEEAMKAYHEL--LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp GGCS-----SHHHHHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred ccCC-----chHHHHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 9852 111022333333 1135799999999999999999998765
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.57 E-value=5.3e-14 Score=156.36 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=109.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh---------hHHhh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL---------EVASL 102 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~---------~Li~~ 102 (890)
...+|+++|.+|||||||+|+|++... ...+..+.+........ ....+.+|||||..... .....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED---GYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE---TTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe---cCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 467999999999999999999998642 11123333322211111 23479999999985421 11111
Q ss_pred hhccccccccCcEEEEEEeCCCcC--chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649 103 FSSFSLTAQSGFTLVLMLDLSRLN--SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180 (890)
Q Consensus 103 ~r~~~~~~~~ad~IIIV~DlSnp~--S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV 180 (890)
+ .. .+|++++|+|++++. ++ +....|+..+.+... ++|+++
T Consensus 243 ~---~~---~ad~illV~D~s~~~~~~~-~~~~~~~~~i~~~~~------------------------------~~piil 285 (357)
T 2e87_A 243 L---RY---LGNLIIYIFDPSEHCGFPL-EEQIHLFEEVHGEFK------------------------------DLPFLV 285 (357)
T ss_dssp G---GG---TCSEEEEEECTTCTTSSCH-HHHHHHHHHHHHHTT------------------------------TSCEEE
T ss_pred H---Hh---cCCEEEEEEeCCccccCCH-HHHHHHHHHHHHhcC------------------------------CCCEEE
Confidence 1 11 389999999999987 55 566677766554221 589999
Q ss_pred EeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
|+||+|+.. ... ...+..++...++++++|||++|.|++++++.|...+.
T Consensus 286 V~NK~Dl~~-----~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 286 VINKIDVAD-----EEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp EECCTTTCC-----HHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECcccCC-----hHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999852 222 24456677778899999999999999999999988874
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.55 E-value=3.8e-14 Score=161.87 Aligned_cols=191 Identities=16% Similarity=0.141 Sum_probs=109.4
Q ss_pred CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEec
Q psy11649 2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGK 78 (890)
Q Consensus 2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~ 78 (890)
|.++|.+.+.+.+.+........ ......++|+|+|++|||||||+|+|++... ...++++.+........
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~-----~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~- 225 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESK-----PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI- 225 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSC-----CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-
T ss_pred CHHHHHHHHHHhcccccccchhc-----cccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-
Confidence 45677888877765332110000 0122468999999999999999999998642 33456655532222221
Q ss_pred cccceEEEEEEcCCCcchhhHH----hhh---h-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhh
Q psy11649 79 TVMKDICHLWELGSGTSRLEVA----SLF---S-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR 150 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~~Li----~~~---r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~ 150 (890)
.+..+.+|||+|..+...+. ..+ + ...++ .++++++|+|+++..+. .. ..+.. .+.
T Consensus 226 --~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~--~ad~vllv~d~~~~~~~-~~-~~i~~----~l~------ 289 (439)
T 1mky_A 226 --DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE--KADVVVIVLDATQGITR-QD-QRMAG----LME------ 289 (439)
T ss_dssp --TTEEEEESSCSCC-----------CCSCCHHHHHHHH--HCSEEEEEEETTTCCCH-HH-HHHHH----HHH------
T ss_pred --CCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHh--hCCEEEEEEeCCCCCCH-HH-HHHHH----HHH------
Confidence 12368999999985543322 111 1 11122 48999999999987775 22 11211 111
Q ss_pred hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649 151 EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRD 230 (890)
Q Consensus 151 ~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~ 230 (890)
..+.|+++|+||+|+.+.......+......+.++...++++++|||++|.|++++++
T Consensus 290 ----------------------~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 290 ----------------------RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp ----------------------HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred ----------------------HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence 1368999999999986310000011111112333334468899999999999999999
Q ss_pred HHHHHH
Q psy11649 231 ILNHYA 236 (890)
Q Consensus 231 ~I~~~l 236 (890)
.|...+
T Consensus 348 ~i~~~~ 353 (439)
T 1mky_A 348 AMNLAY 353 (439)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.54 E-value=1.9e-13 Score=154.48 Aligned_cols=159 Identities=11% Similarity=0.056 Sum_probs=107.3
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEe-------------------c----cccceEEEEEE
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSG-------------------K----TVMKDICHLWE 89 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g-------------------~----~~~k~~l~IwD 89 (890)
...++|+++|.+|+|||||+++|++..... . ..|...+... . ......+.+||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK--K--LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS--S--SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc--c--cCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 357899999999999999999999843221 1 1111111100 0 00114799999
Q ss_pred cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649 90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG 169 (890)
Q Consensus 90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~ 169 (890)
|||++.|......+ +. ++|++|+|+|+++..++ .....|+..+....
T Consensus 82 tPGh~~~~~~~~~~----~~--~~D~~ilVvda~~~~~~-~qt~~~~~~~~~~~-------------------------- 128 (403)
T 3sjy_A 82 APGHEVLMATMLSG----AA--LMDGAILVVAANEPFPQ-PQTREHFVALGIIG-------------------------- 128 (403)
T ss_dssp CCCCGGGHHHHHHH----HT--TCSEEEEEEETTSCSSC-HHHHHHHHHHHHHT--------------------------
T ss_pred CCCcHHHHHHHHHH----Hh--hCCEEEEEEECCCCCCc-HHHHHHHHHHHHcC--------------------------
Confidence 99998886665555 11 49999999999998755 45566665433210
Q ss_pred cccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 170 LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 170 li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..|+++|+||+|+.. .+......++++++...+ +++++++||++|.|+++|++.|...+
T Consensus 129 -----~~~iivviNK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 129 -----VKNLIIVQNKVDVVS---KEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp -----CCCEEEEEECGGGSC---HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred -----CCCEEEEEECccccc---hHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 148999999999963 122222333444444433 56899999999999999999998875
No 135
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.3e-14 Score=142.98 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=81.2
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSF 106 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~ 106 (890)
...++|+|+|++|||||||+++|++... .+.++++.+| ....+.+||+||+..+...+..+ +..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 4578999999999999999999998642 2234444332 22368999999998886666555 221
Q ss_pred ccccccCcEEEEEEeCC-CcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 107 SLTAQSGFTLVLMLDLS-RLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlS-np~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
.. .++++|+|+|++ ++.++ ..+..|+..+...... ....++|+++|+||+
T Consensus 116 ~~---~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~ilv~nK~ 166 (193)
T 2ged_A 116 AK---FVKGLIFMVDSTVDPKKL-TTTAEFLVDILSITES-------------------------SCENGIDILIACNKS 166 (193)
T ss_dssp GG---GEEEEEEEEETTCCHHHH-HHHHHHHHHHHHHHHH-------------------------HSTTCCCEEEEEECT
T ss_pred cc---cCCEEEEEEECCCCchhH-HHHHHHHHHHHhhhhh-------------------------ccccCCCEEEEEEch
Confidence 11 279999999999 78887 6777777665543221 012368999999999
Q ss_pred cCCC
Q psy11649 186 DLFE 189 (890)
Q Consensus 186 Dl~~ 189 (890)
|+..
T Consensus 167 Dl~~ 170 (193)
T 2ged_A 167 ELFT 170 (193)
T ss_dssp TSTT
T ss_pred HhcC
Confidence 9963
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.52 E-value=1.3e-14 Score=167.67 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=104.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc-chhhHHhhh----hcc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT-SRLEVASLF----SSF 106 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~-~~~~Li~~~----r~~ 106 (890)
.++|+|+|.+|||||||+|+|++.+ ....++++.++....... .+..+.+|||||.. .+...+..+ ...
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~---~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI---RGILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE---TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec---CCeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 4799999999999999999999853 334466666643322222 23479999999987 543221110 001
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
.++ ++|++|+|+|++++.++ +... +++ .+ .++|+++|+||+|
T Consensus 320 ~~~--~aD~vl~VvD~s~~~s~-~~~~-il~----~l------------------------------~~~piivV~NK~D 361 (482)
T 1xzp_A 320 EIE--KADIVLFVLDASSPLDE-EDRK-ILE----RI------------------------------KNKRYLVVINKVD 361 (482)
T ss_dssp HHH--HCSEEEEEEETTSCCCH-HHHH-HHH----HH------------------------------TTSSEEEEEEECS
T ss_pred Hhh--cccEEEEEecCCCCCCH-HHHH-HHH----Hh------------------------------cCCCEEEEEECcc
Confidence 122 49999999999999886 3322 111 11 1479999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+.... ...++++++. .++++++|||+++.|++++++.|...++
T Consensus 362 L~~~~-------~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 362 VVEKI-------NEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp SCCCC-------CHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred ccccc-------CHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 95311 1223344332 4578999999999999999999988763
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.52 E-value=1.9e-14 Score=159.60 Aligned_cols=157 Identities=15% Similarity=0.060 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc----hhhHHhhh-hcccc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS----RLEVASLF-SSFSL 108 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----~~~Li~~~-r~~~~ 108 (890)
+|+|+|.+|||||||+++|++... ++ +..+++..+.... ......+.||||||... +..+...+ +. +
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~-~ftTl~p~~g~v~--~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~--i 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADY-HFTTLVPNLGMVE--TDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH--I 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESST-TSSCCCCCEEEEE--CSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH--H
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccC-CccccCceEEEEE--eCCCceEEEecCCCCcccccccchhHHHHHHH--H
Confidence 588999999999999999998531 22 2222222221222 11124799999999643 23344444 21 1
Q ss_pred ccccCcEEEEEEeCCC---cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 109 TAQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 109 ~~~~ad~IIIV~DlSn---p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
..++++|+|+|+++ ..++ +.+..|.+++..+... ...+|++||+||+
T Consensus 235 --~~~d~ll~VvD~s~~~~~~~~-~~~~~~~~eL~~~~~~---------------------------l~~~p~ilV~NK~ 284 (342)
T 1lnz_A 235 --ERTRVIVHVIDMSGLEGRDPY-DDYLTINQELSEYNLR---------------------------LTERPQIIVANKM 284 (342)
T ss_dssp --HHCCEEEEEEESSCSSCCCHH-HHHHHHHHHHHHSCSS---------------------------TTTSCBCBEEECT
T ss_pred --HhccEEEEEEECCcccccChH-HHHHHHHHHHHHhhhh---------------------------hcCCCEEEEEECc
Confidence 13899999999999 6666 7778888766553211 1358999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
|+.. .+ +.+.+++..++ .++++|||+++.|++++++.|...+.
T Consensus 285 Dl~~-----~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 285 DMPE-----AA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp TSTT-----HH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred cCCC-----CH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 9852 22 34566777776 68999999999999999999998874
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=7.6e-14 Score=161.48 Aligned_cols=162 Identities=11% Similarity=0.072 Sum_probs=108.6
Q ss_pred cCCccceEEEEEcCCCCCHHHHHHHHHcCC---------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHH
Q psy11649 30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN---------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVA 100 (890)
Q Consensus 30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li 100 (890)
...+..++|+++|..++|||||+++|++.. ....++++++..|..... .+..+.+|||||++.|....
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~i~iiDtPGh~~~~~~~ 90 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL---ENYRITLVDAPGHADLIRAV 90 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE---TTEEEEECCCSSHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE---CCEEEEEEECCChHHHHHHH
Confidence 345678999999999999999999999854 122333443332222221 23479999999998775554
Q ss_pred hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649 101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180 (890)
Q Consensus 101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV 180 (890)
... +. ++|++|+|+|+++...- ....++..+. ..++|+++
T Consensus 91 ~~~----~~--~aD~~ilVvda~~g~~~--qt~e~l~~~~--------------------------------~~~ip~Iv 130 (482)
T 1wb1_A 91 VSA----AD--IIDLALIVVDAKEGPKT--QTGEHMLILD--------------------------------HFNIPIIV 130 (482)
T ss_dssp HHH----TT--SCCEEEEEEETTTCSCH--HHHHHHHHHH--------------------------------HTTCCBCE
T ss_pred HHH----Hh--hCCEEEEEEecCCCccH--HHHHHHHHHH--------------------------------HcCCCEEE
Confidence 444 11 49999999999984331 1222222111 13689999
Q ss_pred EeecccCCCCCCcchhhhhHHHHHHHHHHc----CCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~----Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
|+||+|+.. .+..+.+.++++.++... +++++++||++|.|+++|++.|...+.
T Consensus 131 viNK~Dl~~---~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 131 VITKSDNAG---TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECTTSSC---HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCccc---chhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999962 233455566777777666 578999999999999999999988763
No 139
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.51 E-value=3.8e-13 Score=140.28 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=100.8
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCC--CccceeEEEEEEeccccceEEEEEEcCCCcch--------hh
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKP--TLALEYIYARKSGKTVMKDICHLWELGSGTSR--------LE 98 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kp--tigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--------~~ 98 (890)
.....++|+|+|.+|||||||+|+|++... ...+ +++.++....... .+..+.||||||.... ..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW---KETELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE---TTEEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe---CCceEEEEECCCccCCCCCHHHHHHH
Confidence 345679999999999999999999999643 2223 3444432212211 2347999999995431 22
Q ss_pred HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649 99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL 178 (890)
Q Consensus 99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi 178 (890)
+...+. ..+. +++++|+|+|+++... ....|+..+.+....- ...|+
T Consensus 102 ~~~~~~-~~~~--~~~~~l~v~d~~~~~~---~~~~~l~~~~~~~~~~---------------------------~~~~~ 148 (239)
T 3lxx_A 102 IIRCIL-LTSP--GPHALLLVVPLGRYTE---EEHKATEKILKMFGER---------------------------ARSFM 148 (239)
T ss_dssp HHHHHH-HTTT--CCSEEEEEEETTCCSS---HHHHHHHHHHHHHHHH---------------------------HGGGE
T ss_pred HHHHHH-hcCC--CCcEEEEEeeCCCCCH---HHHHHHHHHHHHhhhh---------------------------ccceE
Confidence 333221 0122 5899999999987655 2344554444433220 13599
Q ss_pred EEEeecccCCCCCCcch-hhhhHHHHHHHHHHcCCeEEEEeccCC-----CCHHHHHHHHHHHH
Q psy11649 179 ILIGGKYDLFENLEPNK-KRIAVQCLRYLAHVNGASLLFHSSLDP-----GLVKRTRDILNHYA 236 (890)
Q Consensus 179 IVVgNK~Dl~~d~d~e~-r~~i~~~lr~la~~~Ga~l~etSAK~~-----~nId~Lk~~I~~~l 236 (890)
+||+||+|+..+.+-+. .......++.++..+|..++.++++.+ .++.+|.+.|...+
T Consensus 149 iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 149 ILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp EEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 99999999863211000 000124678888889988888887654 57888877777765
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.50 E-value=3.3e-15 Score=170.05 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=106.3
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh---hc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF---SS 105 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~---r~ 105 (890)
....++|+|+|..|+|||||+++|++... ...++++.+..+....... ...+++|||||+..+..+.... ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP--IGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETT--TEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC--CCeEEEEECcCCCcccchhHHHHHHHH
Confidence 44578999999999999999999998642 3345555554443333221 2279999999997664432110 00
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
..+. ++|++|+|+|++. . +....|++.+.+ .++|+++|+||+
T Consensus 109 ~~l~--~aD~vllVvD~~~-~---~~~~~~l~~l~~--------------------------------~~~piIvV~NK~ 150 (423)
T 3qq5_A 109 RVFY--RADCGILVTDSAP-T---PYEDDVVNLFKE--------------------------------MEIPFVVVVNKI 150 (423)
T ss_dssp HHHT--SCSEEEEECSSSC-C---HHHHHHHHHHHH--------------------------------TTCCEEEECCCC
T ss_pred HHHh--cCCEEEEEEeCCC-h---HHHHHHHHHHHh--------------------------------cCCCEEEEEeCc
Confidence 0122 4999999999932 2 344566665443 158999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+... +. .+..+.++..+|++++++||++|.|++++++.|...+
T Consensus 151 Dl~~~-----~~--~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 151 DVLGE-----KA--EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp TTTTC-----CC--THHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CCCCc-----cH--HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 99632 11 1456777788899999999999999999999999887
No 141
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.50 E-value=3.9e-14 Score=161.70 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=106.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCccceeEEEEEEeccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DT-------------------------------PKPTLALEYIYARKSGKTV 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~-------------------------------~kptigvdY~f~~~~g~~~ 80 (890)
..++|+++|..++|||||+++|++.. .. ...+++++..+.....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~--- 81 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--- 81 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC---
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec---
Confidence 36899999999999999999998631 10 0233444433222221
Q ss_pred cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649 81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 160 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~ 160 (890)
....+.||||||+..|......+ +. .+|++|+|+|+++ .+| +++..|....+++...
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~----~~--~aD~~ilVvDa~~-gsf-e~~~~~~~qt~~~~~~--------------- 138 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITG----AS--QADAAILVVSAKK-GEY-EAGMSVEGQTREHIIL--------------- 138 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHT----SS--CCSEEEEEEECST-THH-HHHHSTTCHHHHHHHH---------------
T ss_pred CCeEEEEEECCCcHHHHHHHHhh----hh--hcCEEEEEEECCC-Ccc-ccccccchHHHHHHHH---------------
Confidence 23379999999999887665555 22 5999999999999 666 6666666655555432
Q ss_pred ccccccccccccCCCC-cEEEEeecccCCCC-CCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649 161 TADEHRDKGLIRTFPV-PLILIGGKYDLFEN-LEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 161 ~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d-~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L 228 (890)
....++ |+++|+||+|+... .+++....+..+++.++..+| ++++++||++|.|+.++
T Consensus 139 ----------~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 139 ----------AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp ----------HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ----------HHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 112345 58999999999632 222233556778888888877 67999999999999744
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.50 E-value=2.8e-13 Score=151.41 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hccccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SSFSLT 109 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~~~~~ 109 (890)
..|+|+|.+|||||||+|+|++... ...+..+.++........ +..+.+|||+|..+. ..++..+ ..+.+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~---g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN---NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK 256 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET---TEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC---CEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence 3599999999999999999998642 112333334322222211 236899999997321 2222222 111122
Q ss_pred cccCcEEEEEEeCCCcCc-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 110 AQSGFTLVLMLDLSRLNS-LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 110 ~~~ad~IIIV~DlSnp~S-~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
.+|++++|+|++++.+ ..+.+..|.+.+.+. ...++|+++|+||+|+.
T Consensus 257 --~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-----------------------------~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 257 --YSDALILVIDSTFSENLLIETLQSSFEILREI-----------------------------GVSGKPILVTLNKIDKI 305 (364)
T ss_dssp --GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-----------------------------TCCSCCEEEEEECGGGC
T ss_pred --hCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-----------------------------CcCCCCEEEEEECCCCC
Confidence 4999999999999862 224555555444331 11258999999999986
Q ss_pred CCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 189 ENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 189 ~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.. . .......+..++..+ +..+++|||+++.|++++++.|...+..
T Consensus 306 ~~---~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 306 NG---D-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CS---C-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred Cc---h-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 31 1 111122344445555 2468999999999999999999988754
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.49 E-value=1.9e-14 Score=165.54 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=95.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF 106 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~ 106 (890)
..++|+|+|.+|||||||+|+|++.+ ....++++.++...... ..+..+.+|||||...+...+... ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~---~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV---VGGIPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE---ETTEEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEE---ECCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence 45789999999999999999999842 23346666553211111 123478999999987665554442 112
Q ss_pred ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649 107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD 186 (890)
Q Consensus 107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D 186 (890)
.+. ++|++++|+|.+++.+. ....|++.+ . ..|+++|+||+|
T Consensus 300 ~~~--~aD~vl~VvD~s~~~~~--~~~~i~~~l----~------------------------------~~piivV~NK~D 341 (462)
T 3geh_A 300 AAN--TADLVLLTIDAATGWTT--GDQEIYEQV----K------------------------------HRPLILVMNKID 341 (462)
T ss_dssp CCC--SCSEEEEEEETTTCSCH--HHHHHHHHH----T------------------------------TSCEEEEEECTT
T ss_pred hhh--cCCEEEEEeccCCCCCH--HHHHHHHhc----c------------------------------CCcEEEEEECCC
Confidence 233 69999999999998885 333444322 1 269999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+... +... .++.++ .+.++++|||+++.|++++++.|...+
T Consensus 342 l~~~-----~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 342 LVEK-----QLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp SSCG-----GGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCcc-----hhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 9631 1111 111111 356899999999999999999999886
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.48 E-value=4.7e-13 Score=153.11 Aligned_cols=160 Identities=16% Similarity=0.051 Sum_probs=105.2
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEec
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGK 78 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~ 78 (890)
....++|+++|.+|+|||||+++|+.... ...++++++..+.....
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~- 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET- 92 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-
Confidence 34568999999999999999999965311 11245566544433322
Q ss_pred cccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCc---hHHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649 79 TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS---LWTEAETFLAKFRAIFESNESVREKRGS 155 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S---~~~~L~~wlq~I~e~~~~ll~~~~~~~~ 155 (890)
.+..+.||||||++.|....... +. ++|++|+|+|+++... | +....+.+.+..
T Consensus 93 --~~~~~~iiDTPGh~~f~~~~~~~----~~--~aD~~ilVVDa~~g~~e~~~-~~~~qt~e~l~~-------------- 149 (439)
T 3j2k_7 93 --EKKHFTILDAPGHKSFVPNMIGG----AS--QADLAVLVISARKGEFETGF-EKGGQTREHAML-------------- 149 (439)
T ss_pred --CCeEEEEEECCChHHHHHHHHhh----Hh--hCCEEEEEEECCCCcccccc-CCCchHHHHHHH--------------
Confidence 22379999999998886655554 11 4999999999998642 1 000011111111
Q ss_pred cccccccccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHcC------CeEEEEeccCCCCHHH
Q psy11649 156 FEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG------ASLLFHSSLDPGLVKR 227 (890)
Q Consensus 156 l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~G------a~l~etSAK~~~nId~ 227 (890)
...+++| +++|+||+|+.. +.+.+....+..++..++..+| ++++++||++|.|+++
T Consensus 150 ---------------~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 150 ---------------AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred ---------------HHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccc
Confidence 1123678 999999999852 2223344556667777777765 4699999999999999
Q ss_pred HHH
Q psy11649 228 TRD 230 (890)
Q Consensus 228 Lk~ 230 (890)
+.+
T Consensus 215 l~~ 217 (439)
T 3j2k_7 215 QSD 217 (439)
T ss_pred ccc
Confidence 654
No 145
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.47 E-value=2.8e-13 Score=142.95 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=99.9
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCC-ccceeEEEEEEeccccceEEEEEEcCCCcchh--------hH
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPT-LALEYIYARKSGKTVMKDICHLWELGSGTSRL--------EV 99 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kpt-igvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~--------~L 99 (890)
.....+|+|+|.+|||||||+|+|++.. ..+.++ ++.+........ .+..+.||||||...+. .+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW---GNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE---TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe---CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 4457899999999999999999999854 223343 444432222221 23479999999976542 11
Q ss_pred HhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE
Q psy11649 100 ASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI 179 (890)
Q Consensus 100 i~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI 179 (890)
...+ ...++ ++|++|+|+|+++... ....+.+.+.+.... ....|++
T Consensus 96 ~~~~-~~~~~--~~d~il~V~d~~~~~~---~~~~~~~~l~~~~~~---------------------------~~~~~~i 142 (260)
T 2xtp_A 96 QRCY-LLSAP--GPHVLLLVTQLGRYTS---QDQQAAQRVKEIFGE---------------------------DAMGHTI 142 (260)
T ss_dssp HHHH-HHHTT--CCSEEEEEEETTCCCH---HHHHHHHHHHHHHCG---------------------------GGGGGEE
T ss_pred HHHH-HhcCC--CCcEEEEEEeCCCCCH---HHHHHHHHHHHHhCc---------------------------hhhccEE
Confidence 2111 01123 5999999999997333 222233333332211 0124566
Q ss_pred EEee-cccCCCCCCcchhhhhH----HHHHHHHHHcCCeE-----EEEeccCCCCHHHHHHHHHHHHh
Q psy11649 180 LIGG-KYDLFENLEPNKKRIAV----QCLRYLAHVNGASL-----LFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 180 VVgN-K~Dl~~d~d~e~r~~i~----~~lr~la~~~Ga~l-----~etSAK~~~nId~Lk~~I~~~lf 237 (890)
+|+| |+|+... .....+. ..++.++..++..+ +++||+++.|++++++.|...+.
T Consensus 143 ~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 143 VLFTHKEDLNGG---SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp EEEECGGGGTTC---CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcccccCCc---cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHH
Confidence 6555 9999521 1111111 33555666665432 78999999999999999988873
No 146
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.47 E-value=3e-13 Score=152.85 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=108.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC---CC------CC----------CCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK---ND------TP----------KPTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~---~~------~~----------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
...++|+++|.+|+|||||+++|++. .+ .+ ..+++++..+..... ....+.||||||+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~~~iiDtpG~ 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET---AKRHYSHVDCPGH 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC---SSCEEEEEECCCS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc---CCeEEEEEECCCh
Confidence 34689999999999999999999872 11 00 123333332211111 2347999999999
Q ss_pred cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649 94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT 173 (890)
Q Consensus 94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~ 173 (890)
+.|......+ +. .+|++|+|+|.++.... ....|+..+..
T Consensus 86 ~~f~~~~~~~----~~--~aD~~ilVvda~~g~~~--qt~~~l~~~~~-------------------------------- 125 (405)
T 2c78_A 86 ADYIKNMITG----AA--QMDGAILVVSAADGPMP--QTREHILLARQ-------------------------------- 125 (405)
T ss_dssp GGGHHHHHHH----HT--TCSSEEEEEETTTCCCH--HHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHH----HH--HCCEEEEEEECCCCCcH--HHHHHHHHHHH--------------------------------
Confidence 8876555444 11 49999999999987653 44445443321
Q ss_pred CCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCC------------------HHHHH
Q psy11649 174 FPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGL------------------VKRTR 229 (890)
Q Consensus 174 l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~n------------------Id~Lk 229 (890)
.++| +++|+||+|+.. +.+..+.+..+++.++..++ ++++++||++|.| ++.|.
T Consensus 126 ~~ip~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll 203 (405)
T 2c78_A 126 VGVPYIVVFMNKVDMVD--DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELL 203 (405)
T ss_dssp TTCCCEEEEEECGGGCC--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEECccccC--cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHH
Confidence 2688 899999999963 11222344556778888776 6799999999987 77888
Q ss_pred HHHHHHH
Q psy11649 230 DILNHYA 236 (890)
Q Consensus 230 ~~I~~~l 236 (890)
+.|...+
T Consensus 204 ~~l~~~l 210 (405)
T 2c78_A 204 DAIDEYI 210 (405)
T ss_dssp HHHHHHS
T ss_pred HHHHhhc
Confidence 8877765
No 147
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.46 E-value=5.9e-13 Score=151.87 Aligned_cols=151 Identities=14% Similarity=0.052 Sum_probs=100.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCC--------------CCCC---------------------ccceeEEEEEEec
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDT--------------PKPT---------------------LALEYIYARKSGK 78 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~--------------~kpt---------------------igvdY~f~~~~g~ 78 (890)
..++|+++|..++|||||+++|++.... ..++ ++++..+....
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~-- 100 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-- 100 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE--
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee--
Confidence 3589999999999999999999864210 0112 12221111111
Q ss_pred cccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649 79 TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH 158 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~ 158 (890)
.....+.||||||++.|......+ +. .+|++|+|+|+++.... ....|+..+..
T Consensus 101 -~~~~~~~iiDtpGh~~f~~~~~~~----~~--~aD~~ilVvDa~~g~~~--qt~~~l~~~~~----------------- 154 (434)
T 1zun_B 101 -TAKRKFIIADTPGHEQYTRNMATG----AS--TCDLAIILVDARYGVQT--QTRRHSYIASL----------------- 154 (434)
T ss_dssp -CSSEEEEEEECCCSGGGHHHHHHH----HT--TCSEEEEEEETTTCSCH--HHHHHHHHHHH-----------------
T ss_pred -cCCceEEEEECCChHHHHHHHHHH----Hh--hCCEEEEEEECCCCCcH--HHHHHHHHHHH-----------------
Confidence 123479999999999886655544 12 49999999999997653 44444432211
Q ss_pred ccccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649 159 FRTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 159 ~~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L 228 (890)
.++ |+++|+||+|+.. .+++....+..+++.++..+| ++++++||++|.|++++
T Consensus 155 ---------------~~~~~iIvviNK~Dl~~-~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 155 ---------------LGIKHIVVAINKMDLNG-FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ---------------TTCCEEEEEEECTTTTT-SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ---------------cCCCeEEEEEEcCcCCc-ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 245 5999999999963 111222345677888888888 68999999999999873
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.45 E-value=3.7e-13 Score=143.94 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=92.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC---CCC-------CCCccceeEEEEEEecc-ccceEEEEEEcCCCc-------
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTP-------KPTLALEYIYARKSGKT-VMKDICHLWELGSGT------- 94 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~-------kptigvdY~f~~~~g~~-~~k~~l~IwDlpG~~------- 94 (890)
...++|+|+|.+|+|||||+|+|++.. ..+ .+|+++++. ...... .....+.||||||..
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQS--KVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEE--EEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEE--EEEEecCCeEEEEEEEECCCccccccchh
Confidence 347999999999999999999998742 232 567776643 222221 122389999999972
Q ss_pred chhhHH-------hhh-h------ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649 95 SRLEVA-------SLF-S------SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 160 (890)
Q Consensus 95 ~~~~Li-------~~~-r------~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~ 160 (890)
.+..+. ..+ + ...+.-..+|++++++|.+...-. ..-..+++.+
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l--------------------- 141 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRL--------------------- 141 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHH---------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHH---------------------
Confidence 233333 222 1 001111126789999977663221 1112222221
Q ss_pred ccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 161 TADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 161 ~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.. ++|+++|+||+|+.. .++.......+++.....++.++.+||+++.+++++.+.|...+
T Consensus 142 -----------~~-~~pvi~V~nK~D~~~---~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 142 -----------HE-KVNIIPLIAKADTLT---PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp -----------TT-TSCEEEEESSGGGSC---HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred -----------hc-cCCEEEEEeccCCCC---HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 11 589999999999862 22333344556666777899999999999999999988887764
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.45 E-value=7.4e-13 Score=149.81 Aligned_cols=161 Identities=9% Similarity=0.076 Sum_probs=96.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCC--CccceeEEEEEEec------------c--c----cceEEEEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKP--TLALEYIYARKSGK------------T--V----MKDICHLW 88 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kp--tigvdY~f~~~~g~------------~--~----~k~~l~Iw 88 (890)
..++|+++|..++|||||+++|++.. ....+ |+.+.|........ . . ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 46899999999999999999999631 23334 45445443222110 0 0 01479999
Q ss_pred EcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649 89 ELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK 168 (890)
Q Consensus 89 DlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~ 168 (890)
|+||++.|....... . ..+|++|+|+|+++........ ..+..+..
T Consensus 87 DtPGh~~f~~~~~~~----~--~~~D~~ilVvda~~g~~~~qt~-e~l~~~~~--------------------------- 132 (408)
T 1s0u_A 87 DSPGHETLMATMLSG----A--SLMDGAILVIAANEPCPQPQTK-EHLMALEI--------------------------- 132 (408)
T ss_dssp ECSSHHHHHHHHHTT----C--SCCSEEEEEEETTSCSSCHHHH-HHHHHHHH---------------------------
T ss_pred ECCCHHHHHHHHHHh----H--hhCCEEEEEEECCCCCCCchhH-HHHHHHHH---------------------------
Confidence 999987765433222 1 1489999999999754210122 22211110
Q ss_pred ccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 169 GLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 169 ~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++ .|+++|+||+|+... +......+++++++..+ +++++++||++|.|+++|++.|...+
T Consensus 133 -----l~~~~iivv~NK~Dl~~~---~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 133 -----LGIDKIIIVQNKIDLVDE---KQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp -----TTCCCEEEEEECTTSSCT---TTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred -----cCCCeEEEEEEccCCCCH---HHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 12 379999999999632 11122345566666653 67899999999999999999998865
No 150
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.45 E-value=6.9e-13 Score=144.31 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=104.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCc-chhh-HHhhh---hc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT-SRLE-VASLF---SS 105 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~-~~~~-Li~~~---r~ 105 (890)
+..+|+|+|.+|||||||+|+|++... ...+..+.+...... .....++.+|||||.. .... +...+ ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~---~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH---TEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE---EETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE---EECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345799999999999999999998632 233433322111111 1123479999999987 3322 21122 12
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
..++ .+|++++|+|.++ -+ ....|+- +.+ ...+.|+++|+||+
T Consensus 84 ~~l~--~~D~vl~Vvd~~~-~~---~~~~~i~---~~l----------------------------~~~~~P~ilvlNK~ 126 (301)
T 1ega_A 84 SSIG--DVELVIFVVEGTR-WT---PDDEMVL---NKL----------------------------REGKAPVILAVNKV 126 (301)
T ss_dssp SCCC--CEEEEEEEEETTC-CC---HHHHHHH---HHH----------------------------HSSSSCEEEEEEST
T ss_pred HHHh--cCCEEEEEEeCCC-CC---HHHHHHH---HHH----------------------------HhcCCCEEEEEECc
Confidence 2233 6899999999987 33 2223321 111 11258999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 186 DLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
|+.. .+......+..++..+|. .++++||+++.|++.+.+.|...+
T Consensus 127 D~~~-----~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 127 DNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTCC-----CHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ccCc-----cHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 9852 244455667778777786 699999999999999999988765
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.44 E-value=5.8e-13 Score=155.70 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=75.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---------------C---------CCCCccceeEEEEEEeccccceEEEEEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------T---------PKPTLALEYIYARKSGKTVMKDICHLWE 89 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------~---------~kptigvdY~f~~~~g~~~~k~~l~IwD 89 (890)
...+|+|+|.+|+|||||+++|+.... . ...++++......... .+..++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~i~liD 88 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY---KDYLINLLD 88 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE---TTEEEEEEC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe---CCEEEEEEE
Confidence 357899999999999999999972100 0 0122222221111111 234799999
Q ss_pred cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649 90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG 169 (890)
Q Consensus 90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~ 169 (890)
|||+..|......+ ++ .+|++|+|+|.++..+. .....|.. +
T Consensus 89 TPG~~df~~~~~~~----l~--~aD~allVvDa~~g~~~-~t~~~~~~-~------------------------------ 130 (528)
T 3tr5_A 89 TPGHADFTEDTYRT----LT--AVDSALMVIDAAKGVEP-RTIKLMEV-C------------------------------ 130 (528)
T ss_dssp CCCSTTCCHHHHHG----GG--GCSEEEEEEETTTCSCH-HHHHHHHH-H------------------------------
T ss_pred CCCchhHHHHHHHH----HH--hCCEEEEEEeCCCCCCH-HHHHHHHH-H------------------------------
Confidence 99999887766655 22 49999999999998775 44444432 1
Q ss_pred cccCCCCcEEEEeecccCC
Q psy11649 170 LIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 170 li~~l~IPiIVVgNK~Dl~ 188 (890)
...++|+++|+||+|+.
T Consensus 131 --~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 131 --RLRHTPIMTFINKMDRD 147 (528)
T ss_dssp --HTTTCCEEEEEECTTSC
T ss_pred --HHcCCCEEEEEeCCCCc
Confidence 12368999999999985
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.43 E-value=6.7e-13 Score=153.47 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=96.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~ 80 (890)
..++|+++|.+|+|||||+++|++... ...++++++..+.....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--- 108 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--- 108 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec---
Confidence 468999999999999999999976311 11123343332222221
Q ss_pred cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHH--HHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649 81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA--ETFLAKFRAIFESNESVREKRGSFEH 158 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L--~~wlq~I~e~~~~ll~~~~~~~~l~~ 158 (890)
.+..+.||||||++.|......+ +. ++|++|+|+|+++..++ ..+ ..+..+......
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~----~~--~aD~~llVvDa~~g~~~-~~~~~~~qt~e~~~~~~-------------- 167 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMG----IS--QADMAILCVDCSTNAFE-SGFDLDGQTKEHMLLAS-------------- 167 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHH----HT--TCSEEEEEEECCC-------CCCCHHHHHHHHHHH--------------
T ss_pred CCceEEEEECCCcHHHHHHHHHh----hh--hCCEEEEEEECCCCccc-cccchhhhHHHHHHHHH--------------
Confidence 23489999999999887666665 12 49999999999997542 111 112221111111
Q ss_pred ccccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649 159 FRTADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR 227 (890)
Q Consensus 159 ~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~ 227 (890)
.++ .|++||+||+|+.. .+.+....+...++.+...+| ++++++||++|.|+++
T Consensus 168 --------------~~~~~~iIvviNK~Dl~~-~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 168 --------------SLGIHNLIIAMNKMDNVD-WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp --------------HTTCCCEEEEEECGGGGT-TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred --------------HcCCCcEEEEEECcCccc-chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 123 35999999999863 112223334555666655554 5799999999999984
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.42 E-value=1.2e-12 Score=154.98 Aligned_cols=155 Identities=13% Similarity=0.023 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------CCCccceeEEEEEEec--cccceEEEEEEcCCCcc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP-----------------KPTLALEYIYARKSGK--TVMKDICHLWELGSGTS 95 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~~~-----------------kptigvdY~f~~~~g~--~~~k~~l~IwDlpG~~~ 95 (890)
-.+|+|+|..++|||||+++|+...+.. ..++++.......... ......++||||||+..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 5789999999999999999998621100 1112221111111111 11234899999999998
Q ss_pred hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649 96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP 175 (890)
Q Consensus 96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~ 175 (890)
|...+..+ ++ .+|++|+|+|+++..+. .++..|..... .+
T Consensus 84 F~~ev~~~----l~--~aD~aILVVDa~~gv~~-qt~~~~~~~~~---------------------------------~~ 123 (599)
T 3cb4_D 84 FSYEVSRS----LA--ACEGALLVVDAGQGVEA-QTLANCYTAME---------------------------------MD 123 (599)
T ss_dssp GHHHHHHH----HH--HCSEEEEEEETTTCCCT-HHHHHHHHHHH---------------------------------TT
T ss_pred HHHHHHHH----HH--HCCEEEEEEECCCCCCH-HHHHHHHHHHH---------------------------------CC
Confidence 87766655 11 49999999999998776 66666664321 26
Q ss_pred CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649 176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+|+++|+||+|+... . ......+++..++.. ++++||++|.|++++++.|...+
T Consensus 124 ipiIvViNKiDl~~a-----~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 124 LEVVPVLNKIDLPAA-----D--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp CEEEEEEECTTSTTC-----C--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred CCEEEeeeccCcccc-----c--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcC
Confidence 899999999999521 1 223455666677764 89999999999999999998876
No 154
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.42 E-value=5e-13 Score=150.77 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=105.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC---CC--C-------------CCCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK---ND--T-------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~---~~--~-------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~ 96 (890)
.++|+++|..++|||||+++|++. .+ . ...+++++..+.... .....+.||||||++.|
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS---TAARHYAHTDCPGHADY 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE---CSSCEEEEEECSSHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec---cCCeEEEEEECCChHHH
Confidence 579999999999999999999873 10 0 012233332221111 12247999999999887
Q ss_pred hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649 97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV 176 (890)
Q Consensus 97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I 176 (890)
......+ +. .+|++|+|+|+++.... ...+.| ..+. ..++
T Consensus 80 ~~~~~~~----~~--~aD~~ilVvda~~g~~~-qt~e~l-~~~~--------------------------------~~~v 119 (397)
T 1d2e_A 80 VKNMITG----TA--PLDGCILVVAANDGPMP-QTREHL-LLAR--------------------------------QIGV 119 (397)
T ss_dssp HHHHHHT----SS--CCSEEEEEEETTTCSCH-HHHHHH-HHHH--------------------------------HTTC
T ss_pred HHHHHhh----Hh--hCCEEEEEEECCCCCCH-HHHHHH-HHHH--------------------------------HcCC
Confidence 5554444 22 59999999999996553 222222 2221 1268
Q ss_pred c-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCC----------HHHHHHHHHHHH
Q psy11649 177 P-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGL----------VKRTRDILNHYA 236 (890)
Q Consensus 177 P-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~n----------Id~Lk~~I~~~l 236 (890)
| +++|+||+|+.. +.+..+.+..++++++..++ ++++++||+++.| +++|.+.|...+
T Consensus 120 p~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 120 EHVVVYVNKADAVQ--DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp CCEEEEEECGGGCS--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CeEEEEEECcccCC--CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 8 789999999963 11122345567788888776 5899999999775 888888887765
No 155
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.42 E-value=2.3e-12 Score=136.04 Aligned_cols=168 Identities=16% Similarity=0.162 Sum_probs=101.9
Q ss_pred CCccceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCC--ccceeEEEEEEeccccceEEEEEEcCCCcch---------h
Q psy11649 31 IQSQERTLLLIGTKSVGKSTLVFRFLEKNDT--PKPT--LALEYIYARKSGKTVMKDICHLWELGSGTSR---------L 97 (890)
Q Consensus 31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~--~kpt--igvdY~f~~~~g~~~~k~~l~IwDlpG~~~~---------~ 97 (890)
.....++|+|+|.+|||||||+|+|++.... ..++ ++......... ..+..+.||||||.... .
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR---WDKCHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE---ETTEEEEEEECCSCSSTTHHHHSTTSH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE---ECCcEEEEEECCCCCCCCCCcHHHHHH
Confidence 3456799999999999999999999986431 1111 22222111111 12347999999996322 2
Q ss_pred hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc
Q psy11649 98 EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP 177 (890)
Q Consensus 98 ~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP 177 (890)
.+...+. .... ++|++|+|+|+++... ....+++.+.+.... ...+.|
T Consensus 94 ~i~~~~~-~~~~--~~d~il~V~d~~~~~~---~~~~~~~~l~~~~~~--------------------------~~~~~~ 141 (247)
T 3lxw_A 94 ERGHCYL-LSAP--GPHALLLVTQLGRFTA---QDQQAVRQVRDMFGE--------------------------DVLKWM 141 (247)
T ss_dssp HHHHHHH-HHTT--CCSEEEEEEETTBCCH---HHHHHHHHHHHHHCG--------------------------GGGGGE
T ss_pred HHHHHHH-hcCC--CCCEEEEEEeCCCCCH---HHHHHHHHHHHHhCh--------------------------hhhccE
Confidence 2222220 0012 5999999999986432 333344444443221 012479
Q ss_pred EEEEeecccCCCCCCcchhhhhH----HHHHHHHHHcCCeEEEEeccC-----CCCHHHHHHHHHHHH
Q psy11649 178 LILIGGKYDLFENLEPNKKRIAV----QCLRYLAHVNGASLLFHSSLD-----PGLVKRTRDILNHYA 236 (890)
Q Consensus 178 iIVVgNK~Dl~~d~d~e~r~~i~----~~lr~la~~~Ga~l~etSAK~-----~~nId~Lk~~I~~~l 236 (890)
++||+||+|+... ...+.+. ..++.+...+|..++.++++. +.++++|.+.|...+
T Consensus 142 iilv~nK~Dl~~~---~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 142 VIVFTRKEDLAGG---SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp EEEEECGGGGTTC---CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEchHhcCCC---CHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 9999999998521 1122221 457888888998887777655 578999998888876
No 156
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.41 E-value=2.3e-12 Score=145.74 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=103.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCC--CccceeEEEEEEec---------------cc---cceEEEEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKP--TLALEYIYARKSGK---------------TV---MKDICHLW 88 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kp--tigvdY~f~~~~g~---------------~~---~k~~l~Iw 88 (890)
..++|+++|..++|||||+++|++.. ....+ |+.+.|........ .. ....+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 46899999999999999999999631 22334 44444432222110 00 01479999
Q ss_pred EcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649 89 ELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK 168 (890)
Q Consensus 89 DlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~ 168 (890)
||||++.|....... . ..+|++|+|+|+++........+ .+..+... .
T Consensus 89 DtPGh~~f~~~~~~~----~--~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~--~----------------------- 136 (410)
T 1kk1_A 89 DAPGHEALMTTMLAG----A--SLMDGAILVIAANEPCPRPQTRE-HLMALQII--G----------------------- 136 (410)
T ss_dssp ECSSHHHHHHHHHHC----G--GGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH--T-----------------------
T ss_pred ECCChHHHHHHHHhh----h--hhCCEEEEEEECCCCCCChhHHH-HHHHHHHc--C-----------------------
Confidence 999987764433222 1 13899999999997531101222 22211110 0
Q ss_pred ccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH---cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 169 GLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 169 ~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..|+++|+||+|+.. .+......+++++++.. .+++++++||+++.|+++|+++|...+
T Consensus 137 ------~~~iivviNK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 137 ------QKNIIIAQNKIELVD---KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp ------CCCEEEEEECGGGSC---HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ------CCcEEEEEECccCCC---HHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 147999999999963 11112233455566554 367899999999999999999998865
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.41 E-value=1.7e-12 Score=153.59 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=104.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCC---------C--------CCCccceeEEEEEE--eccccceEEEEEEcCCCc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDT---------P--------KPTLALEYIYARKS--GKTVMKDICHLWELGSGT 94 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~---------~--------kptigvdY~f~~~~--g~~~~k~~l~IwDlpG~~ 94 (890)
.-.+|+++|..++|||||+++|+...+. . ..++++.-...... ........+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3578999999999999999999762110 0 01111110000111 111122489999999999
Q ss_pred chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
.|...+..+ ++ .+|++|+|+|+++..+. ..+..|..... .
T Consensus 85 dF~~ev~r~----l~--~aD~aILVVDa~~gv~~-qt~~~~~~a~~---------------------------------~ 124 (600)
T 2ywe_A 85 DFSYEVSRA----LA--ACEGALLLIDASQGIEA-QTVANFWKAVE---------------------------------Q 124 (600)
T ss_dssp GGHHHHHHH----HH--TCSEEEEEEETTTBCCH-HHHHHHHHHHH---------------------------------T
T ss_pred hHHHHHHHH----HH--hCCEEEEEEECCCCccH-HHHHHHHHHHH---------------------------------C
Confidence 886655555 12 49999999999998876 66666654221 2
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|+++|+||+|+... . ......+++..+|.. ++++||++|.|++++++.|...+
T Consensus 125 ~ipiIvviNKiDl~~a-----~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 125 DLVIIPVINKIDLPSA-----D--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp TCEEEEEEECTTSTTC-----C--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCEEEEEeccCcccc-----C--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 6899999999999521 1 223455677777763 89999999999999999998876
No 158
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=2.2e-12 Score=130.54 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=98.6
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc----------hhhHH
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS----------RLEVA 100 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----------~~~Li 100 (890)
....+|+|+|.+|||||||+++|++.. ..+.++.|..+........ . .+.+||+||... +....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA--D--GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE--T--TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec--C--CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 345789999999999999999999854 2223444433211111111 1 478999999742 22233
Q ss_pred hhh-hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649 101 SLF-SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL 178 (890)
Q Consensus 101 ~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi 178 (890)
..+ .. .. .++++++|+|++++.+..+ .+..|+. ..++|+
T Consensus 100 ~~~~~~--~~--~~~~~~~v~d~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~ 140 (210)
T 1pui_A 100 GEYLEK--RQ--SLQGLVVLMDIRHPLKDLDQQMIEWAV-----------------------------------DSNIAV 140 (210)
T ss_dssp HHHHHH--CT--TEEEEEEEEETTSCCCHHHHHHHHHHH-----------------------------------HTTCCE
T ss_pred HHHHHh--hh--cccEEEEEEECCCCCchhHHHHHHHHH-----------------------------------HcCCCe
Confidence 333 11 11 3789999999999876521 1222221 126899
Q ss_pred EEEeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
++|+||+|+.. ..+++.....++.++...+ +.+++|||+++.|++++++.|...+
T Consensus 141 ~~v~nK~D~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 141 LVLLTKADKLA---SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEEECGGGSC---HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecccCCC---chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 99999999862 2233333455666666654 5688999999999999999998876
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.39 E-value=2.7e-14 Score=166.83 Aligned_cols=157 Identities=13% Similarity=0.033 Sum_probs=104.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
+..+|+++|.+|+|||||+++|++.. ....++++.++.+.... ......+.+|||||++.|..+...+ +.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~--~~~g~~i~~iDTPGhe~f~~~~~~~----~~-- 74 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVS--LPSGEKITFLDTPGHAAFSAMRARG----TQ-- 74 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBC--SSCSSCCBCEECSSSCCTTTSBBSS----SB--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEE--eCCCCEEEEEECCChHHHHHHHHHH----Hc--
Confidence 35689999999999999999999742 23446666554322221 1122379999999998887776655 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
.+|++|+|+|+++.... ...+.|. . ....++|+++|+||+|+....
T Consensus 75 ~aD~vILVVDa~dg~~~-qt~e~l~----~-----------------------------~~~~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 75 VTDIVILVVAADDGVMK-QTVESIQ----H-----------------------------AKDAHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp SBSSCEEECBSSSCCCH-HHHHHHH----H-----------------------------HHTTTCCEEECCBSGGGTTTS
T ss_pred cCCEEEEEEECCCCccH-HHHHHHH----H-----------------------------HHHcCCcEEEEEecccccccc
Confidence 59999999999996654 2222221 1 112368999999999985311
Q ss_pred CcchhhhhHHHHHHH---HHHc--CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYL---AHVN--GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 192 d~e~r~~i~~~lr~l---a~~~--Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.. ...+..+ +..+ .++++++||++|.|+++|++.|...+
T Consensus 121 -~~~v---~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 121 -PEKV---KKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp -CCSS---SSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred -hHHH---HHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 1111 1112111 2223 25799999999999999999998876
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.39 E-value=2e-12 Score=144.79 Aligned_cols=146 Identities=10% Similarity=-0.007 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEE
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTL 116 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~I 116 (890)
+|+++|.+++|||||+++|+. .+++++..+..... .+.+++||||||++.|....... ++ .+|++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~~~~~~---~~~~i~iiDtPGh~~f~~~~~~~----~~--~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITMYNNDK---EGRNMVFVDAHSYPKTLKSLITA----LN--ISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESSSEEEEECS---SSSEEEEEECTTTTTCHHHHHHH----HH--TCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEEeeEEEEec---CCeEEEEEECCChHHHHHHHHHH----HH--HCCEE
Confidence 899999999999999999983 33333333323222 22379999999998875443333 11 49999
Q ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE-EEEee-cccCCCCCCcc
Q psy11649 117 VLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL-ILIGG-KYDLFENLEPN 194 (890)
Q Consensus 117 IIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi-IVVgN-K~Dl~~d~d~e 194 (890)
|+|+| +.... .....|+..+.. .++|. ++|+| |+|+ . .+
T Consensus 88 ilVvd-~~g~~--~qt~e~~~~~~~--------------------------------~~i~~~ivvvNNK~Dl-~---~~ 128 (370)
T 2elf_A 88 VLCIP-PQGLD--AHTGECIIALDL--------------------------------LGFKHGIIALTRSDST-H---MH 128 (370)
T ss_dssp EEEEC-TTCCC--HHHHHHHHHHHH--------------------------------TTCCEEEEEECCGGGS-C---HH
T ss_pred EEEEc-CCCCc--HHHHHHHHHHHH--------------------------------cCCCeEEEEEEeccCC-C---HH
Confidence 99999 65433 344455443221 35787 88999 9998 3 11
Q ss_pred hhhhhHHHHHHHHHHcC---CeEEE--EeccC---CCCHHHHHHHHHHHH
Q psy11649 195 KKRIAVQCLRYLAHVNG---ASLLF--HSSLD---PGLVKRTRDILNHYA 236 (890)
Q Consensus 195 ~r~~i~~~lr~la~~~G---a~l~e--tSAK~---~~nId~Lk~~I~~~l 236 (890)
......+++++++..++ +++++ +||++ +.|+++|++.|...+
T Consensus 129 ~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 129 AIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp HHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 22223456667666654 68999 99999 999999999998876
No 161
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.38 E-value=4.7e-13 Score=154.26 Aligned_cols=157 Identities=16% Similarity=0.053 Sum_probs=91.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCCCC---------------------------------CCCccceeEEEEEEecc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTP---------------------------------KPTLALEYIYARKSGKT 79 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~~---------------------------------kptigvdY~f~~~~g~~ 79 (890)
...++|+++|..++|||||+++|+...... ..+++++..+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~--- 117 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE--- 117 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE---
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe---
Confidence 345899999999999999999997521100 11222222111111
Q ss_pred ccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC---chHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q psy11649 80 VMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN---SLWTEAETFLAKFRAIFESNESVREKRGSF 156 (890)
Q Consensus 80 ~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~---S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l 156 (890)
..+..+.||||||++.|....... +. .+|++|+|+|+++.. +| +....|.+.+...
T Consensus 118 ~~~~~~~iiDtPGh~~f~~~~~~~----~~--~aD~~ilVvDa~~g~~e~sf-~~~~qt~e~l~~~-------------- 176 (467)
T 1r5b_A 118 TEHRRFSLLDAPGHKGYVTNMING----AS--QADIGVLVISARRGEFEAGF-ERGGQTREHAVLA-------------- 176 (467)
T ss_dssp CSSEEEEECCCCC---------------TT--SCSEEEEEEECSTTHHHHTT-STTCCHHHHHHHH--------------
T ss_pred cCCeEEEEEECCCcHHHHHHHHhh----cc--cCCEEEEEEeCCcCcccccc-CCCCcHHHHHHHH--------------
Confidence 123479999999998875554444 12 599999999999852 22 1111222222111
Q ss_pred ccccccccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHc-C------CeEEEEeccCCCCHHH
Q psy11649 157 EHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVN-G------ASLLFHSSLDPGLVKR 227 (890)
Q Consensus 157 ~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~-G------a~l~etSAK~~~nId~ 227 (890)
...++| ++||+||+|+.. +.+.+..+.+..+++.++..+ | ++++++||++|.|+++
T Consensus 177 ---------------~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 177 ---------------RTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp ---------------HHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred ---------------HHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 113688 999999999852 222333455666777887776 4 5699999999999986
Q ss_pred H
Q psy11649 228 T 228 (890)
Q Consensus 228 L 228 (890)
+
T Consensus 242 l 242 (467)
T 1r5b_A 242 R 242 (467)
T ss_dssp C
T ss_pred c
Confidence 4
No 162
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.38 E-value=2.2e-12 Score=142.08 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=85.3
Q ss_pred ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCC-------CcCchHHHHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649 82 KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS-------RLNSLWTEAETFLAKFRAIFESNESVREKRG 154 (890)
Q Consensus 82 k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlS-------np~S~~~~L~~wlq~I~e~~~~ll~~~~~~~ 154 (890)
..+++|||++|+++++.++..| |+ +++++|+|+|+| +..+. +.+..|...+.+.+..
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~y----f~--~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~--------- 229 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHC----FE--NVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITY--------- 229 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGG----CS--SCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTS---------
T ss_pred ceeeEEEEcCCchhHHHHHHHH----hC--CCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhh---------
Confidence 3489999999999999999888 34 699999999776 32222 3344444433333321
Q ss_pred ccccccccccccccccccCCCCcEEEEeecccCCCCCCcchh----------------hhhHHHHHHHH----------H
Q psy11649 155 SFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKK----------------RIAVQCLRYLA----------H 208 (890)
Q Consensus 155 ~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r----------------~~i~~~lr~la----------~ 208 (890)
....++|++|+|||+|++. ++ ....+++.+++ .
T Consensus 230 ----------------~~~~~~~iiL~~NK~DL~~-----~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~ 288 (327)
T 3ohm_A 230 ----------------PWFQNSSVILFLNKKDLLE-----EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS 288 (327)
T ss_dssp ----------------GGGTTCEEEEEEECHHHHH-----HHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred ----------------hccCCceEEEEEECchhhh-----hhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence 1112589999999999863 22 23445566553 3
Q ss_pred HcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649 209 VNGASLLFHSSLDPGLVKRTRDILNHYAFSS 239 (890)
Q Consensus 209 ~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~ 239 (890)
..++.+++|||+++.||+.+++.+...+...
T Consensus 289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999998887653
No 163
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.38 E-value=1.2e-12 Score=150.43 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=99.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCC---------------------------------CCCccceeEEEEEEeccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDTP---------------------------------KPTLALEYIYARKSGKTV 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~---------------------------------kptigvdY~f~~~~g~~~ 80 (890)
..++|+++|.+++|||||+++|++..... ..+++++..+.....
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--- 82 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--- 82 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC---
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec---
Confidence 46899999999999999999998631000 123333322222221
Q ss_pred cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC---chHH---HHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649 81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN---SLWT---EAETFLAKFRAIFESNESVREKRG 154 (890)
Q Consensus 81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~---S~~~---~L~~wlq~I~e~~~~ll~~~~~~~ 154 (890)
.+..+.||||||+..|......+ +. .+|++|+|+|+++.. +| + ....++..+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~----~~--~aD~~ilVvda~~g~~~~sf-~~~~qt~~~~~~~--------------- 140 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITG----TS--QADCAILIIAGGVGEFEAGI-SKDGQTREHALLA--------------- 140 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHS----SS--CCSEEEEEEECSHHHHHHHT-CTTSHHHHHHHHH---------------
T ss_pred CCceEEEEECCCcHHHHHHHHhh----hh--hCCEEEEEEeCCcCcccccc-CcchhHHHHHHHH---------------
Confidence 23479999999998876665555 22 599999999998752 11 0 111111111
Q ss_pred ccccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649 155 SFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 155 ~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L 228 (890)
...++| ++||+||+|+.. .+.+....+..+++.++..+| ++++++||++|.|++++
T Consensus 141 -----------------~~~~v~~iivviNK~Dl~~-~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 141 -----------------FTLGVRQLIVAVNKMDSVK-WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp -----------------HHTTCCEEEEEEECGGGGT-TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred -----------------HHcCCCeEEEEEEcccccc-CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 113576 999999999962 122233456667888887776 68999999999998754
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.6e-12 Score=154.40 Aligned_cols=156 Identities=13% Similarity=0.048 Sum_probs=98.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCCCC---------------------------------CCCccceeEEEEEEecc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTP---------------------------------KPTLALEYIYARKSGKT 79 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~~---------------------------------kptigvdY~f~~~~g~~ 79 (890)
...++|+++|.+|+|||||+++|++..... .++++++..+.....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 346899999999999999999999752211 123443322222221
Q ss_pred ccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC---chHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q psy11649 80 VMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN---SLWTEAETFLAKFRAIFESNESVREKRGSF 156 (890)
Q Consensus 80 ~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~---S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l 156 (890)
.+..+.||||||+..|......+ +. ++|++|+|+|+++.. ++ +....+.. ++..
T Consensus 243 -~~~~~~iiDTPG~e~f~~~~~~~----~~--~aD~~llVVDa~~g~~e~~~-~~~~qt~e----~l~~----------- 299 (611)
T 3izq_1 243 -HRANFTIVDAPGHRDFVPNAIMG----IS--QADMAILCVDCSTNAFESGF-DLDGQTKE----HMLL----------- 299 (611)
T ss_dssp -SSCEEEEEECCSSSCHHHHHTTT----SS--CCSEEEEEEECSHHHHHTTC-CTTSHHHH----HHHH-----------
T ss_pred -CCceEEEEECCCCcccHHHHHHH----Hh--hcCceEEEEECCCCcccccc-hhhhHHHH----HHHH-----------
Confidence 23379999999998886665555 22 599999999998741 10 00001111 1110
Q ss_pred ccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649 157 EHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 157 ~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L 228 (890)
...+++| ++||+||+|+.. .+.+....+...+..+...+| +++++|||++|.|++++
T Consensus 300 --------------~~~lgi~~iIVVvNKiDl~~-~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 300 --------------ASSLGIHNLIIAMNKMDNVD-WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp --------------HHTTTCCEEEEEEECTTTTT-TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred --------------HHHcCCCeEEEEEecccccc-hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1122444 999999999863 112223344556666666655 58999999999999865
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.36 E-value=1.5e-12 Score=139.43 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=91.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCC--------CCCCc-----------------cceeEEEEEE------------
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDT--------PKPTL-----------------ALEYIYARKS------------ 76 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~--------~kpti-----------------gvdY~f~~~~------------ 76 (890)
...+|+|+|.+|||||||+|+|++.... ..|+. |..| .+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~--tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF--TDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB--CCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc--CCHHHHHHHHHHHHHH
Confidence 4579999999999999999999986432 12320 0000 0000
Q ss_pred --e--------------ccccceEEEEEEcCCCcc-------------hhhHHhhhhccccccccCcEEE-EEEeCCCcC
Q psy11649 77 --G--------------KTVMKDICHLWELGSGTS-------------RLEVASLFSSFSLTAQSGFTLV-LMLDLSRLN 126 (890)
Q Consensus 77 --g--------------~~~~k~~l~IwDlpG~~~-------------~~~Li~~~r~~~~~~~~ad~II-IV~DlSnp~ 126 (890)
+ .......+.+|||||... +..+...+ ++ +++.+| +|+|.++..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~il~v~d~~~~~ 176 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF----VT--KENCLILAVSPANSDL 176 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHH----HT--STTEEEEEEEESSSCG
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHH----Hc--CCCeEEEEEecCCcch
Confidence 0 000123799999999642 23344444 11 356555 799998865
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHH
Q psy11649 127 SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL 206 (890)
Q Consensus 127 S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~l 206 (890)
+. .....|.+. ....+.|+++|+||+|+... .......++..
T Consensus 177 ~~-~~~~~~~~~--------------------------------~~~~~~~~i~V~NK~Dl~~~-----~~~~~~~~~~~ 218 (299)
T 2aka_B 177 AN-SDALKIAKE--------------------------------VDPQGQRTIGVITKLDLMDE-----GTDARDVLENK 218 (299)
T ss_dssp GG-CHHHHHHHH--------------------------------HCTTCSSEEEEEECGGGSCT-----TCCCHHHHTTC
T ss_pred hh-hHHHHHHHH--------------------------------hCCCCCeEEEEEEccccCCC-----CchHHHHHhCC
Confidence 43 122223321 11236899999999999632 11111222210
Q ss_pred --HHHcC-CeEEEEeccCCCCHHHHHHHHHH
Q psy11649 207 --AHVNG-ASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 207 --a~~~G-a~l~etSAK~~~nId~Lk~~I~~ 234 (890)
....| ++++++||+++.|++++++.|..
T Consensus 219 ~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 219 LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp SSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred cCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 01113 46889999999999999888865
No 166
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.33 E-value=5.3e-12 Score=156.63 Aligned_cols=159 Identities=12% Similarity=0.057 Sum_probs=105.0
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCC---C--C-------------CCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKN---D--T-------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGT 94 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~--~-------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~ 94 (890)
...++|+++|.+++|||||+++|++.. + . ...+++++..+... ......+.||||||++
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f---~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY---DTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE---ECSSCEEEEEECCCHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE---cCCCEEEEEEECCChH
Confidence 346899999999999999999998730 0 0 01122222111111 1123489999999998
Q ss_pred chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
.|......+ +. .+|++|+|+|+++.... ....|+..+.. .
T Consensus 371 dF~~~mi~g----as--~AD~aILVVDAtdGv~~--QTrEhL~ll~~--------------------------------l 410 (1289)
T 3avx_A 371 DYVKNMITG----AA--QMDGAILVVAATDGPMP--QTREHILLGRQ--------------------------------V 410 (1289)
T ss_dssp HHHHHHHHT----SC--CCSEEEEEEETTTCSCT--THHHHHHHHHH--------------------------------H
T ss_pred HHHHHHHHH----Hh--hCCEEEEEEcCCccCcH--HHHHHHHHHHH--------------------------------c
Confidence 876555444 22 59999999999996543 33344433321 2
Q ss_pred CCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCC--------CCHHHHHHHHHHHH
Q psy11649 175 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDP--------GLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~--------~nId~Lk~~I~~~l 236 (890)
++| +|||+||+|+.. +.+..+.+..+++.++..+| ++++++||++| .|+++|.+.|...+
T Consensus 411 gIP~IIVVINKiDLv~--d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 411 GVPYIIVFLNKCDMVD--DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TCSCEEEEEECCTTCC--CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEEeeccccc--chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 688 899999999963 11112345567788888776 58999999999 46888888887754
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.33 E-value=6.8e-12 Score=148.53 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=99.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCccceeEEEEEE------ecccc-------ceEEEEEEcCCCc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND------TPKPTLALEYIYARKS------GKTVM-------KDICHLWELGSGT 94 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------~~kptigvdY~f~~~~------g~~~~-------k~~l~IwDlpG~~ 94 (890)
+..+|+|+|.+|+|||||+++|++... ...++++..+ .... +.... ...+++|||||++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~--~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATE--IPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEE--EEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEE--EeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 457899999999999999999987411 1223444332 1111 10000 1159999999998
Q ss_pred chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
.|..+...+ ++ .+|++|+|+|+++.-.- .+.+.|. .++ ..
T Consensus 82 ~F~~~~~r~----~~--~aD~aILVvDa~~Gv~~-qT~e~l~-~l~--------------------------------~~ 121 (594)
T 1g7s_A 82 AFTTLRKRG----GA--LADLAILIVDINEGFKP-QTQEALN-ILR--------------------------------MY 121 (594)
T ss_dssp CCTTSBCSS----SB--SCSEEEEEEETTTCCCH-HHHHHHH-HHH--------------------------------HT
T ss_pred HHHHHHHHH----Hh--hCCEEEEEEECCCCccH-hHHHHHH-HHH--------------------------------Hc
Confidence 887665544 22 59999999999993221 2222222 111 12
Q ss_pred CCcEEEEeecccCCCCCCcc---------------hhhhhHHH----HHHHHHH--------------cCCeEEEEeccC
Q psy11649 175 PVPLILIGGKYDLFENLEPN---------------KKRIAVQC----LRYLAHV--------------NGASLLFHSSLD 221 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e---------------~r~~i~~~----lr~la~~--------------~Ga~l~etSAK~ 221 (890)
++|+++|+||+|+....... -+....+. ...+... ..++++++||++
T Consensus 122 ~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~t 201 (594)
T 1g7s_A 122 RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAIT 201 (594)
T ss_dssp TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTT
T ss_pred CCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccC
Confidence 68999999999996432210 00111111 1122211 113799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy11649 222 PGLVKRTRDILNHYA 236 (890)
Q Consensus 222 ~~nId~Lk~~I~~~l 236 (890)
|.|+++|.+.|...+
T Consensus 202 G~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 202 GEGIPELLTMLMGLA 216 (594)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHhhc
Confidence 999999999998775
No 168
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.33 E-value=7.2e-12 Score=138.65 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=81.4
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCC----------CcCchHHHHHHHHHHHHHHHhhhhhhhhh
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS----------RLNSLWTEAETFLAKFRAIFESNESVREK 152 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlS----------np~S~~~~L~~wlq~I~e~~~~ll~~~~~ 152 (890)
.+++|||++|+++++.++..| |+ +++++|+|+|+| +..++ .....|+..+.. .
T Consensus 161 v~l~iwDtaGQe~~R~~w~~y----y~--~a~~iIfV~diS~ydq~l~e~~~~nr~-~es~~~~~~i~~---~------- 223 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSF----FS--DVDCAIFVTSLAEYDMKLYEDGNTSRL-TESIAVFKDIMT---N------- 223 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTT----SC--SCSEEEEEEEGGGTTCBCC--CCSBHH-HHHHHHHHHHHH---C-------
T ss_pred eeeccccCCCcccccccHHHH----hc--cCCEEEEEEECCccccccccccccchH-HHHHHHHHHHhh---h-------
Confidence 489999999999999999988 34 699999999999 56666 333334433322 1
Q ss_pred ccccccccccccccccccccCCCCcEEEEeecccCCCC-C---------Cc-chhhhhHHHHHHHHHHc-----------
Q psy11649 153 RGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-L---------EP-NKKRIAVQCLRYLAHVN----------- 210 (890)
Q Consensus 153 ~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-~---------d~-e~r~~i~~~lr~la~~~----------- 210 (890)
....++|++|+|||+|+..+ . .+ .......+..+.+..++
T Consensus 224 ------------------~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~ 285 (340)
T 4fid_A 224 ------------------EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNI 285 (340)
T ss_dssp ------------------GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC
T ss_pred ------------------hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhc
Confidence 01125899999999998631 0 00 00001122222222233
Q ss_pred ---------------CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 211 ---------------GASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 211 ---------------Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
++.+++|||++..||+.+++.+...++.
T Consensus 286 ~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 286 SGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp --------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 3678999999999999999998888765
No 169
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=146.55 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=80.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CC--------CCCccceeEEEEEEecccc-ceEEEEEEcCCC-------c
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TP--------KPTLALEYIYARKSGKTVM-KDICHLWELGSG-------T 94 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~--------kptigvdY~f~~~~g~~~~-k~~l~IwDlpG~-------~ 94 (890)
..++|+|+|.+|||||||+++|++... .+ .+|+++++ ......... ...+.||||||. +
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~--~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEA--STVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEE--EEEC----CEEEEEEEEC------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEE--EEEEeecCCcccceEEEEeccccccCccHH
Confidence 468999999999999999999877421 11 24555442 122211111 227999999998 5
Q ss_pred chhhHHh-------hh-hc------cccccccCcEEEEEEeCCC-cCchHHHHH-HHHHHHHHHHhhhhhhhhhcccccc
Q psy11649 95 SRLEVAS-------LF-SS------FSLTAQSGFTLVLMLDLSR-LNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEH 158 (890)
Q Consensus 95 ~~~~Li~-------~~-r~------~~~~~~~ad~IIIV~DlSn-p~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~ 158 (890)
++..+.. .| +. ..+. ++.+.++||++++ ..++ ..+. .|++.+
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~--d~rv~~~vy~I~~~~~~l-~~~d~~~~~~l------------------- 171 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHII--DNRVHCCFYFISPFGHGL-KPLDVAFMKAI------------------- 171 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CC--CCCCCEEEEEECSSSSSC-CHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccc--CCceEEEEEEEecCCCCc-chhHHHHHHHh-------------------
Confidence 5655554 33 11 0111 2223345555554 3444 3333 233211
Q ss_pred ccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhH--HHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAV--QCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~--~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
..++|+|+|+||+|+.. .+.... ..++.++..+|++++++||+++.+ ++....+...+
T Consensus 172 --------------~~~~piIlV~NK~Dl~~-----~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 172 --------------HNKVNIVPVIAKADTLT-----LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp --------------CS-SCEEEEEECCSSSC-----HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred --------------ccCCCEEEEEECCCCCC-----HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 12689999999999962 333322 577888888899999999999998 55544444443
No 170
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.1e-11 Score=138.89 Aligned_cols=243 Identities=12% Similarity=0.020 Sum_probs=137.5
Q ss_pred CccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----
Q psy11649 24 SEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR---- 96 (890)
Q Consensus 24 ~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~---- 96 (890)
.++++...+.+..+|+|||.||||||||+|+|++.. .++ |..+++-...... ..+.++++.||||....
T Consensus 61 ~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~-pftT~~~~~g~~~---~~~~~i~l~D~pGl~~~a~~~ 136 (376)
T 4a9a_A 61 AGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEY-EFTTLVTVPGVIR---YKGAKIQMLDLPGIIDGAKDG 136 (376)
T ss_dssp CSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGT-CSSCCCEEEEEEE---ETTEEEEEEECGGGCCC----
T ss_pred CCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCC-CCceeeeeeEEEE---eCCcEEEEEeCCCccCCchhh
Confidence 345677888999999999999999999999999843 233 5555553222221 22348999999997532
Q ss_pred hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhh-----hhccc----cccc--------
Q psy11649 97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR-----EKRGS----FEHF-------- 159 (890)
Q Consensus 97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~-----~~~~~----l~~~-------- 159 (890)
..+...+ -...+ .+|++++|+|.++|..- .+....++......+.... +.... +...
T Consensus 137 ~~~g~~~-l~~i~--~ad~il~vvD~~~p~~~---~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~ 210 (376)
T 4a9a_A 137 RGRGKQV-IAVAR--TCNLLFIILDVNKPLHH---KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGN 210 (376)
T ss_dssp -CHHHHH-HHHHH--HCSEEEEEEETTSHHHH---HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCH
T ss_pred hHHHHHH-HHHHH--hcCccccccccCccHHH---HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccH
Confidence 1122222 00011 39999999999987543 2222233322211111100 00000 0000
Q ss_pred -----------c-----------cccccccc-ccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEE
Q psy11649 160 -----------R-----------TADEHRDK-GLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLF 216 (890)
Q Consensus 160 -----------~-----------~~~~~~d~-~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~e 216 (890)
+ ..++..+. .......+|+++|+||+|... .+++..+... -.+++
T Consensus 211 eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~----------~eele~l~~~--~~~~~ 278 (376)
T 4a9a_A 211 DEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLS----------IEELELLYRI--PNAVP 278 (376)
T ss_dssp HHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSC----------HHHHHHHTTS--TTEEE
T ss_pred HHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccC----------HHHHHHHhcc--cchhh
Confidence 0 00010110 112234679999999999752 1223333221 24788
Q ss_pred EeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCCCCCCCCccccccccccccchhHHHhhc
Q psy11649 217 HSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRG 296 (890)
Q Consensus 217 tSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl~r~~~~~~~~~~~~~~~~~~~f~~~~~ 296 (890)
+|+..+.|+++|.+.+..++--..+ ........+...+|.| +..| .++..+++..+|+++...|.++.+
T Consensus 279 is~~~e~gLd~Li~~~y~~L~Li~~-fT~g~~E~rawt~~~~------~~a~----~at~~D~a~~ih~d~~~~F~~a~v 347 (376)
T 4a9a_A 279 ISSGQDWNLDELLQVMWDRLNLVRI-YTKPKGQIPDFTDPVV------LRSD----RCSVKDFCNQIHKSLVDDFRNALV 347 (376)
T ss_dssp CCTTTCTTHHHHHHHHHHHHCCEEE-EECCSSSCCCSSSCEE------EBTT----BCBHHHHHHHHCGGGGGGEEEEEE
T ss_pred hhhhhcccchhHHHHHHHHcCCcEE-EeCCCCCcCCCCcccc------ccCC----CCcHHHHHHHHHHHHHHhhhHhhh
Confidence 9999999999999998888721111 1111112222222211 1112 468889999999999999999999
Q ss_pred ccc
Q psy11649 297 WIE 299 (890)
Q Consensus 297 w~~ 299 (890)
|=.
T Consensus 348 ~Gs 350 (376)
T 4a9a_A 348 YGS 350 (376)
T ss_dssp EST
T ss_pred cCc
Confidence 943
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.29 E-value=2.4e-12 Score=152.43 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=83.1
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCC---------------------------------CCCCCCccceeEEEEEEec
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKN---------------------------------DTPKPTLALEYIYARKSGK 78 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~---------------------------------~~~kptigvdY~f~~~~g~ 78 (890)
....++|+++|.+|+|||||+++|++.. ....++++++..+.....
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 3455789999999999999999996420 011334454433322221
Q ss_pred cccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC---ch--HHHHHHHHHHHHHHHhhhhhhhhhc
Q psy11649 79 TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN---SL--WTEAETFLAKFRAIFESNESVREKR 153 (890)
Q Consensus 79 ~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~---S~--~~~L~~wlq~I~e~~~~ll~~~~~~ 153 (890)
.+..+.||||||+..|....... +. .+|++|+|+|+++.. .+ .......+..
T Consensus 253 --~~~~i~iiDTPGh~~f~~~~~~~----~~--~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~--------------- 309 (592)
T 3mca_A 253 --DKKIYEIGDAPGHRDFISGMIAG----AS--SADFAVLVVDSSQNNFERGFLENGQTREHAYL--------------- 309 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHH---------------
T ss_pred --CCeEEEEEECCChHHHHHHHHHH----Hh--hCCEEEEEEECCCCccccccccchHHHHHHHH---------------
Confidence 12379999999998775444333 22 499999999999642 00 0011111111
Q ss_pred cccccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHH-HHcCC-----eEEEEeccCCCCHH
Q psy11649 154 GSFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNGA-----SLLFHSSLDPGLVK 226 (890)
Q Consensus 154 ~~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-~~~Ga-----~l~etSAK~~~nId 226 (890)
...+++| +|||+||+|+.. .+.+....+...++.+. ..+|+ +++++||++|.|++
T Consensus 310 -----------------~~~lgip~iIvviNKiDl~~-~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 310 -----------------LRALGISEIVVSVNKLDLMS-WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp -----------------HHHSSCCCEEEEEECGGGGT-TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred -----------------HHHcCCCeEEEEEecccccc-ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 1113676 999999999852 12223344556666666 55565 69999999999998
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.28 E-value=2.1e-11 Score=129.54 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=77.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-h--ccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-S--SFS 107 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r--~~~ 107 (890)
..++|+|+|.+|||||||+|+|++... ...++.+.+....... ..+..+.||||||+..+..+...+ + ...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT---MGGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEE---ETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEE---ECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 478999999999999999999998642 2223333232211111 123379999999997664332222 0 000
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
+...+++++++|+|++... +.+.-..|++.+.+.... ....|+++|+||+|+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~---------------------------~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK---------------------------EIWCKTLLVLTHAQF 163 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG---------------------------GGGGGEEEEEECTTC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch---------------------------hhhcCEEEEEeCccc
Confidence 1001389999999998755 423334677777665432 112599999999998
Q ss_pred C
Q psy11649 188 F 188 (890)
Q Consensus 188 ~ 188 (890)
.
T Consensus 164 ~ 164 (262)
T 3def_A 164 S 164 (262)
T ss_dssp C
T ss_pred C
Confidence 5
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.26 E-value=3.6e-13 Score=156.20 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=95.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ 111 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~ 111 (890)
+..+|+++|..++|||||+++|++.. ....++++.+....... ..+..+.+|||||++.|..+.... +.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~---~~~~~i~~iDTPGhe~f~~~~~~~----~~-- 73 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVE---TENGMITFLDTPGHAAFTSMRARG----AQ-- 73 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCC---TTSSCCCEECCCTTTCCTTSBCSS----SB--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEE---ECCEEEEEEECCCcHHHHHHHHHH----Hh--
Confidence 45689999999999999999998731 12223444332111111 112378999999998886665444 22
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
.+|++|+|+|+++.... ...+.| ..+ ...++|+++|+||+|+....
T Consensus 74 ~aD~aILVVda~~g~~~-qT~e~l-~~~--------------------------------~~~~vPiIVviNKiDl~~~~ 119 (501)
T 1zo1_I 74 ATDIVVLVVAADDGVMP-QTIEAI-QHA--------------------------------KAAQVPVVVAVNKIDKPEAD 119 (501)
T ss_dssp SCSSEEEEEETTTBSCT-TTHHHH-HHH--------------------------------HHTTCCEEEEEECSSSSTTC
T ss_pred hCCEEEEEeecccCccH-HHHHHH-HHH--------------------------------HhcCceEEEEEEeccccccC
Confidence 58999999999983321 111222 111 11368999999999985311
Q ss_pred CcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~ 233 (890)
...-..... ....++..++ ++++++||++|.|+++|++.|.
T Consensus 120 ~~~v~~~l~-~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~ 162 (501)
T 1zo1_I 120 PDRVKNELS-QYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162 (501)
T ss_dssp CCCTTCCCC-CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred HHHHHHHHH-HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence 000000000 0011223344 6899999999999999988764
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.25 E-value=7.1e-12 Score=139.22 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=71.4
Q ss_pred EEEEEEcCCCcch-------------hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhh
Q psy11649 84 ICHLWELGSGTSR-------------LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR 150 (890)
Q Consensus 84 ~l~IwDlpG~~~~-------------~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~ 150 (890)
.+.+|||||..++ ..+...| +. +++++|+|+|.++.... ...|+..++.
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~----i~--~~d~iilvv~~~~~~~~---~~~~~~l~~~--------- 198 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSY----IE--KPNCIILAISPANQDLA---TSDAIKISRE--------- 198 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHH----HH--SSSEEEEEEEETTSCGG---GCHHHHHHHH---------
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHH----hh--cCCeEEEEeecccCCcC---CHHHHHHHHH---------
Confidence 6899999998765 4444444 22 59999999998765442 1334433322
Q ss_pred hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649 151 EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRD 230 (890)
Q Consensus 151 ~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~ 230 (890)
+...+.|+++|+||+|+.. ........++.++..++..++.+|++++.+++....
T Consensus 199 --------------------~~~~~~~~i~V~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 199 --------------------VDPSGDRTFGVLTKIDLMD-----KGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp --------------------SCTTCTTEEEEEECGGGCC-----TTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCC
T ss_pred --------------------hcccCCCEEEEEeCCccCC-----CcccHHHHHcCccccccCCeEEEEECChHHhccCCC
Confidence 2334789999999999973 222223344445566788899999999998887654
Q ss_pred HHH
Q psy11649 231 ILN 233 (890)
Q Consensus 231 ~I~ 233 (890)
.+.
T Consensus 254 ~~~ 256 (360)
T 3t34_A 254 MIA 256 (360)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.23 E-value=4.5e-11 Score=143.99 Aligned_cols=111 Identities=13% Similarity=0.014 Sum_probs=75.5
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC----------------------CCCCCccceeEEEEEEeccccceEEEEEEc
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND----------------------TPKPTLALEYIYARKSGKTVMKDICHLWEL 90 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~----------------------~~kptigvdY~f~~~~g~~~~k~~l~IwDl 90 (890)
....+|+|+|.+|+|||||+++|+.... ....|+... ...... ....++||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~---~~~~i~liDT 84 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW---KDHRINIIDT 84 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE---TTEEEEEECC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE---CCeEEEEEEC
Confidence 4568999999999999999999984100 112222222 111111 2348999999
Q ss_pred CCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649 91 GSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG 169 (890)
Q Consensus 91 pG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~ 169 (890)
||+..|......+ + .+|++|+|+|.++..+. .....|.. +.+
T Consensus 85 PG~~df~~~~~~~l~-------~aD~~ilVvDa~~g~~~-~t~~~~~~-~~~---------------------------- 127 (691)
T 1dar_A 85 PGHVDFTIEVERSMR-------VLDGAIVVFDSSQGVEP-QSETVWRQ-AEK---------------------------- 127 (691)
T ss_dssp CSSTTCHHHHHHHHH-------HCSEEEEEEETTTCSCH-HHHHHHHH-HHH----------------------------
T ss_pred cCccchHHHHHHHHH-------HCCEEEEEEECCCCcch-hhHHHHHH-HHH----------------------------
Confidence 9998887666655 3 39999999999998876 45555543 111
Q ss_pred cccCCCCcEEEEeecccCCC
Q psy11649 170 LIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 170 li~~l~IPiIVVgNK~Dl~~ 189 (890)
.++|+++|+||+|+..
T Consensus 128 ----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 128 ----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp ----TTCCEEEEEECTTSTT
T ss_pred ----cCCCEEEEEECCCccc
Confidence 2689999999999863
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.23 E-value=8.1e-11 Score=141.21 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=74.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCC--CC------------------CCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDT--PK------------------PTLALEYIYARKSGKTVMKDICHLWELGSG 93 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~--~k------------------ptigvdY~f~~~~g~~~~k~~l~IwDlpG~ 93 (890)
...+|+|+|..|+|||||+++|++.... .. .++++... .... ......++||||||+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~--~~~~-~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTG--VAPL-LFRGHRVFLLDAPGY 84 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCE--EEEE-EETTEEEEEEECCCS
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEec--ceEE-eeCCEEEEEEeCCCc
Confidence 3578999999999999999999952111 10 12222211 1111 112348999999999
Q ss_pred cchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649 94 TSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR 172 (890)
Q Consensus 94 ~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~ 172 (890)
..|......+ + .+|++++|+|.++.... ....++..+..
T Consensus 85 ~~f~~~~~~~l~-------~ad~~ilVvD~~~g~~~--qt~~~~~~~~~------------------------------- 124 (665)
T 2dy1_A 85 GDFVGEIRGALE-------AADAALVAVSAEAGVQV--GTERAWTVAER------------------------------- 124 (665)
T ss_dssp GGGHHHHHHHHH-------HCSEEEEEEETTTCSCH--HHHHHHHHHHH-------------------------------
T ss_pred cchHHHHHHHHh-------hcCcEEEEEcCCcccch--hHHHHHHHHHH-------------------------------
Confidence 9887666555 3 38999999999886553 33333332221
Q ss_pred CCCCcEEEEeecccCC
Q psy11649 173 TFPVPLILIGGKYDLF 188 (890)
Q Consensus 173 ~l~IPiIVVgNK~Dl~ 188 (890)
.++|+++|+||+|+.
T Consensus 125 -~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 125 -LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -TTCCEEEEEECGGGC
T ss_pred -ccCCEEEEecCCchh
Confidence 268999999999985
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=1.2e-10 Score=132.41 Aligned_cols=160 Identities=19% Similarity=0.140 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hccc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFS 107 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~ 107 (890)
..|+|+|.+|||||||+++|++... .+ +..++......... .....+.+||++|.... ..+...+ +.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-~ftTl~p~~G~V~~--~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~-- 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY-PFTTLSPNLGVVEV--SEEERFTLADIPGIIEGASEGKGLGLEFLRH-- 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCC-TTCSSCCEEEEEEC--SSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCc-ccceecceeeEEEe--cCcceEEEEeccccccchhhhhhhhHHHHHH--
Confidence 3489999999999999999998521 11 21222211111111 11237899999997532 1121222 11
Q ss_pred cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649 108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL 187 (890)
Q Consensus 108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl 187 (890)
. ..++.++.|+|++ ...+ ..+..|.+++......+. ..|.++|+||+|+
T Consensus 233 ~--era~~lL~vvDls-~~~~-~~ls~g~~el~~la~aL~---------------------------~~P~ILVlNKlDl 281 (416)
T 1udx_A 233 I--ARTRVLLYVLDAA-DEPL-KTLETLRKEVGAYDPALL---------------------------RRPSLVALNKVDL 281 (416)
T ss_dssp H--TSSSEEEEEEETT-SCHH-HHHHHHHHHHHHHCHHHH---------------------------HSCEEEEEECCTT
T ss_pred H--HHHHhhhEEeCCc-cCCH-HHHHHHHHHHHHHhHHhh---------------------------cCCEEEEEECCCh
Confidence 1 1389999999998 4444 778888776665433222 3699999999998
Q ss_pred CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.. + .....+.+.+...++.++++||+++.|++++++.|...+..
T Consensus 282 ~~------~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 282 LE------E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp SC------H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hh------H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 52 2 23344556666678899999999999999999999998854
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.21 E-value=1.5e-10 Score=135.32 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=71.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCCCC------------------------CCCccceeEEEEEEeccccceEEEEEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKNDTP------------------------KPTLALEYIYARKSGKTVMKDICHLWE 89 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~------------------------kptigvdY~f~~~~g~~~~k~~l~IwD 89 (890)
...+|+|+|.+|+|||||+++|+...... ..++++...... .......++|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~---~~~~~~~i~liD 88 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQ---FPYHDCLVNLLD 88 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEE---EEETTEEEEEEC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEE---EEECCeEEEEEE
Confidence 35799999999999999999998631100 001111100000 111234899999
Q ss_pred cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649 90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG 169 (890)
Q Consensus 90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~ 169 (890)
|||+..|......+ ++ .+|++|+|+|.++.... ....+++ .+
T Consensus 89 TPG~~df~~~~~~~----l~--~aD~~IlVvDa~~g~~~--~t~~~~~----~~-------------------------- 130 (529)
T 2h5e_A 89 TPGHEDFSEDTYRT----LT--AVDCCLMVIDAAKGVED--RTRKLME----VT-------------------------- 130 (529)
T ss_dssp CCCSTTCCHHHHHG----GG--GCSEEEEEEETTTCSCH--HHHHHHH----HH--------------------------
T ss_pred CCCChhHHHHHHHH----HH--HCCEEEEEEeCCccchH--HHHHHHH----HH--------------------------
Confidence 99998886655555 22 49999999999986542 2222222 11
Q ss_pred cccCCCCcEEEEeecccCCC
Q psy11649 170 LIRTFPVPLILIGGKYDLFE 189 (890)
Q Consensus 170 li~~l~IPiIVVgNK~Dl~~ 189 (890)
...++|+++|+||+|+..
T Consensus 131 --~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 131 --RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp --TTTTCCEEEEEECTTSCC
T ss_pred --HHcCCCEEEEEcCcCCcc
Confidence 123689999999999853
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.18 E-value=1.4e-10 Score=139.87 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=100.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccc--eeEE------EEEE--ec---------------cc-----
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLAL--EYIY------ARKS--GK---------------TV----- 80 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigv--dY~f------~~~~--g~---------------~~----- 80 (890)
..++|+|+|.+|+|||||+|+|++... ...|++.. .+.| +... +. ..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999998532 22344421 0000 0100 00 00
Q ss_pred ---------------------c---ceEEEEEEcCCCcchh---hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHH
Q psy11649 81 ---------------------M---KDICHLWELGSGTSRL---EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE 133 (890)
Q Consensus 81 ---------------------~---k~~l~IwDlpG~~~~~---~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~ 133 (890)
. +..+.||||||..... .....+ +. ++|++|+|+|.+++.+. ..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~----i~--~aD~vL~Vvda~~~~s~-~e~~ 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGY----VN--NCHAILFVMRASQPCTL-GERR 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHH----HH--SSSEEEEEEETTSTTCH-HHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHH----HH--hCCEEEEEEeCCCccch-hHHH
Confidence 0 0258999999975532 223233 22 59999999999998876 4554
Q ss_pred HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC--Ccchh---h----hhHHHH-
Q psy11649 134 TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL--EPNKK---R----IAVQCL- 203 (890)
Q Consensus 134 ~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~--d~e~r---~----~i~~~l- 203 (890)
.|.+. +...+.|+++|+||+|+..+. +++.. . .+....
T Consensus 221 ~l~~~--------------------------------l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~ 268 (695)
T 2j69_A 221 YLENY--------------------------------IKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFN 268 (695)
T ss_dssp HHHHH--------------------------------TTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------------HHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHH
Confidence 45432 122367999999999986321 11110 0 011111
Q ss_pred HHHHHHc--------CCeEEEEecc--------------CCCCHHHHHHHHHHHHh
Q psy11649 204 RYLAHVN--------GASLLFHSSL--------------DPGLVKRTRDILNHYAF 237 (890)
Q Consensus 204 r~la~~~--------Ga~l~etSAK--------------~~~nId~Lk~~I~~~lf 237 (890)
..+.... +..+++|||+ ++.|++++.+.|...+.
T Consensus 269 ~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 269 ANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 1122221 2469999999 99999999999988763
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.18 E-value=3.1e-11 Score=131.34 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=82.7
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC-CC--CC--------CCCccceeEEEEEEec-cccceEEEEEEcCCC-------
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK-ND--TP--------KPTLALEYIYARKSGK-TVMKDICHLWELGSG------- 93 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~-~~--~~--------kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~------- 93 (890)
.-.++|+|+|++|||||||+++|++. .. .. .++++.. +...... ......+.+||++|.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~--~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIE--ASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEe--eEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 34689999999999999999998874 21 11 1222221 1111111 111237999999998
Q ss_pred cchhhHHh-------hh-hc------cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy11649 94 TSRLEVAS-------LF-SS------FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF 159 (890)
Q Consensus 94 ~~~~~Li~-------~~-r~------~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~ 159 (890)
+.+..+.. .+ +. +.+....+++++++.+.+. .++ +.+.. +.+++. .
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~L-d~~~~--~~l~~l-~--------------- 153 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGL-KPLDV--AFMKAI-H--------------- 153 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSC-CHHHH--HHHHHH-T---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCC-CHHHH--HHHHHH-H---------------
Confidence 55555543 33 11 1111011333444433222 233 23221 222221 1
Q ss_pred cccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 160 RTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 160 ~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
..+|+++|+||+|+.. ..+.....+.+++++..+++.++++||+++ |+++++..+...+.
T Consensus 154 --------------~~~~iilV~~K~Dl~~---~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 154 --------------NKVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp --------------TTSCEEEEECCGGGSC---HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred --------------hcCCEEEEEEeCCCCC---HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 1479999999999862 122334456788899999999999999999 99999888877763
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.18 E-value=1.8e-10 Score=122.71 Aligned_cols=122 Identities=12% Similarity=0.019 Sum_probs=75.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHh----hh-hc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVAS----LF-SS 105 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~----~~-r~ 105 (890)
..++|+|+|.+|||||||+|+|++... ...++.+.+.. .... ......+.||||||...+..+.. .. +.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV--MVSR-SRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE--EEEE-EETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE--EEEE-eeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 368999999999999999999998642 11122222211 1111 11234799999999876532211 11 10
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY 185 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~ 185 (890)
-.. .++|++++|+|++.. ++...-..|++.+.+.... ...+|+++|+||+
T Consensus 115 ~~~--~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~---------------------------~~~~~iivV~nK~ 164 (270)
T 1h65_A 115 LLD--KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK---------------------------GIWNKAIVALTHA 164 (270)
T ss_dssp TTT--CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG---------------------------GGGGGEEEEEECC
T ss_pred hhc--CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCc---------------------------ccccCEEEEEECc
Confidence 001 148999999999764 3422334677666554321 1136999999999
Q ss_pred cCC
Q psy11649 186 DLF 188 (890)
Q Consensus 186 Dl~ 188 (890)
|+.
T Consensus 165 Dl~ 167 (270)
T 1h65_A 165 QFS 167 (270)
T ss_dssp SCC
T ss_pred ccC
Confidence 985
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.17 E-value=8.1e-11 Score=133.02 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEE----EE-----------------eccccceEEEEEEcCC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYAR----KS-----------------GKTVMKDICHLWELGS 92 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~----~~-----------------g~~~~k~~l~IwDlpG 92 (890)
++|+|+|.+|||||||+|+|++... ...|..+.+..... .. ........+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 4799999999999999999998532 11222222211111 00 0000123799999999
Q ss_pred Ccch----hhHHhhhhccccccccCcEEEEEEeCCCc
Q psy11649 93 GTSR----LEVASLFSSFSLTAQSGFTLVLMLDLSRL 125 (890)
Q Consensus 93 ~~~~----~~Li~~~r~~~~~~~~ad~IIIV~DlSnp 125 (890)
.... +.+...+ ...++ ++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~-l~~i~--~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKF-LDDLR--MASALIHVVDATGK 114 (397)
T ss_dssp --------------C-CCSST--TCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHH-HHHHh--cCCEEEEEEecccc
Confidence 8542 3333333 01133 69999999999986
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.15 E-value=1.9e-10 Score=138.67 Aligned_cols=114 Identities=13% Similarity=0.050 Sum_probs=74.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC--CCC------C------------CCCccceeEEEEEEeccccceEEEEEEcCC
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDT------P------------KPTLALEYIYARKSGKTVMKDICHLWELGS 92 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~------~------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG 92 (890)
....+|+|+|.+|+|||||+++|+.. ... . .+++++........ .....++||||||
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~---~~~~~i~liDTPG 84 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA---WEGHRVNIIDTPG 84 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE---ETTEEEEEECCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE---ECCeeEEEEECcC
Confidence 34689999999999999999999851 110 0 11112111111111 1234899999999
Q ss_pred CcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649 93 GTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR 172 (890)
Q Consensus 93 ~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~ 172 (890)
+..|......+ ++ .+|++|+|+|.++..+. .....|.. +.+
T Consensus 85 ~~df~~~~~~~----l~--~aD~~llVvDa~~g~~~-~~~~~~~~-~~~------------------------------- 125 (693)
T 2xex_A 85 HVDFTVEVERS----LR--VLDGAVTVLDAQSGVEP-QTETVWRQ-ATT------------------------------- 125 (693)
T ss_dssp CSSCCHHHHHH----HH--HCSEEEEEEETTTBSCH-HHHHHHHH-HHH-------------------------------
T ss_pred CcchHHHHHHH----HH--HCCEEEEEECCCCCCcH-HHHHHHHH-HHH-------------------------------
Confidence 98886666555 11 39999999999998776 44444432 211
Q ss_pred CCCCcEEEEeecccCCC
Q psy11649 173 TFPVPLILIGGKYDLFE 189 (890)
Q Consensus 173 ~l~IPiIVVgNK~Dl~~ 189 (890)
.++|+++|+||+|+..
T Consensus 126 -~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 126 -YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp -TTCCEEEEEECTTSTT
T ss_pred -cCCCEEEEEECCCccc
Confidence 2689999999999863
No 184
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=1.5e-10 Score=129.19 Aligned_cols=236 Identities=10% Similarity=0.019 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCC-CCCccceeEEEEEEecc------------ccceEEEEEEcCCCcchhh-
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN---DTP-KPTLALEYIYARKSGKT------------VMKDICHLWELGSGTSRLE- 98 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~-kptigvdY~f~~~~g~~------------~~k~~l~IwDlpG~~~~~~- 98 (890)
.+|+|||.+|||||||+|+|++.. .++ ..|+..........+.. .....+++|||||+.++..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999853 222 11222221111111100 0013799999999987532
Q ss_pred ---HHhhhhccccccccCcEEEEEEeCCCc----------CchHHHHHHHHHHHHH--------HHhhhhhhh---h---
Q psy11649 99 ---VASLFSSFSLTAQSGFTLVLMLDLSRL----------NSLWTEAETFLAKFRA--------IFESNESVR---E--- 151 (890)
Q Consensus 99 ---Li~~~r~~~~~~~~ad~IIIV~DlSnp----------~S~~~~L~~wlq~I~e--------~~~~ll~~~---~--- 151 (890)
+...+ -..++ ++|++++|+|+++. +.+ +.+..+..++.- .+.++.... .
T Consensus 83 ~~gl~~~f-l~~ir--~ad~il~VvD~~~~~~v~~v~~~~dp~-~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~ 158 (363)
T 1jal_A 83 GEGLGNKF-LANIR--ETDAIGHVVRCFENDDIVHVAGKIDPL-DDIDTINTELALADLDSCERAIQRLQKRAKGGDKEA 158 (363)
T ss_dssp HGGGTCCH-HHHHH--TCSEEEEEEECSCC---------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred cchHHHHH-HHHHH--hcCeEEEEEecCCCCceeeecCCcChH-HHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhH
Confidence 22222 00122 59999999999973 222 444444444431 111100000 0
Q ss_pred -----hccc----ccccc--ccccc--cccc----cccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeE
Q psy11649 152 -----KRGS----FEHFR--TADEH--RDKG----LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASL 214 (890)
Q Consensus 152 -----~~~~----l~~~~--~~~~~--~d~~----li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l 214 (890)
.... +++.. ...+. .+.. +.-....|+++|+||.|.- ++ .......++.++...++.+
T Consensus 159 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~--~~---~n~~~~~v~~~~~~~~~~~ 233 (363)
T 1jal_A 159 KFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDG--FE---NNPYLDRVREIAAKEGAVV 233 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTC--SS---SCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccc--cc---ccHHHHHHHHHHHHcCCCE
Confidence 0000 11000 00000 0001 1122358999999999862 11 1234566888898889999
Q ss_pred EEEeccC----------------------CCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCC-CC
Q psy11649 215 LFHSSLD----------------------PGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HG 271 (890)
Q Consensus 215 ~etSAK~----------------------~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r 271 (890)
+++||+. +.|++++.+...+++ +... +-+.|.+.. .+. ++
T Consensus 234 i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L-~li~------------~ft~g~~e~----raw~i~ 296 (363)
T 1jal_A 234 VPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL-NLQT------------YFTAGVKEV----RAWTVS 296 (363)
T ss_dssp EEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT-TEEE------------EEEECSSEE----EEEEEE
T ss_pred EEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh-CCEE------------EECCCCCCc----ceeEec
Confidence 9999764 356777666655554 1000 112333322 122 66
Q ss_pred CCCCccccccccccccchhHHHhhcc
Q psy11649 272 KDASLESGGRGFNRSRGMKFEKKRGW 297 (890)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~f~~~~~w 297 (890)
++++..+.+..+|.++...|-++.+|
T Consensus 297 ~G~ta~~aAg~IH~D~~~gFi~Aev~ 322 (363)
T 1jal_A 297 VGATAPKAAAVIHTDFEKGFIRAEVI 322 (363)
T ss_dssp TTCBHHHHHHTTCTTHHHHCCEEEEE
T ss_pred CCCcHHHHHHhhHHHHHhccEEEEEc
Confidence 78888899999999999999999887
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.15 E-value=1.8e-10 Score=124.43 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=23.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND 60 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~ 60 (890)
...+|+|+|.+|||||||+|+|++...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 357899999999999999999998643
No 186
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=1.3e-10 Score=126.38 Aligned_cols=131 Identities=11% Similarity=0.102 Sum_probs=99.5
Q ss_pred HHHHHHHcC--C-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC
Q psy11649 50 TLVFRFLEK--N-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN 126 (890)
Q Consensus 50 SLInrL~~~--~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~ 126 (890)
||+.+++.+ . ..+.||+|..|.. .. ... .+++|||+ ++++..+...+ ++ ++|++|+|||++++.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~--~~-~~~--~~~~iwD~--qer~~~l~~~~----~~--~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEY--TP-DET--GSGVIENV--LHRKNLLTKPH----VA--NVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEE--EC-CCS--SSEEEEEE--CCCSCEETTTT----EE--SCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccccCCCCCCccEEEE--EE-cCC--CeEEEEEE--ccccceeeccc----cc--cCCEEEEEEeCCCCC
Confidence 688787764 3 5678999955432 21 111 26999999 88888888877 33 699999999999998
Q ss_pred -chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHH
Q psy11649 127 -SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY 205 (890)
Q Consensus 127 -S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~ 205 (890)
++ +.+..|+..++. .++|++||+||+|+.. .+.+ +++.+
T Consensus 99 ~s~-~~l~~~l~~~~~--------------------------------~~~piilv~NK~DL~~-----~~~v--~~~~~ 138 (301)
T 1u0l_A 99 TST-YIIDKFLVLAEK--------------------------------NELETVMVINKMDLYD-----EDDL--RKVRE 138 (301)
T ss_dssp CCH-HHHHHHHHHHHH--------------------------------TTCEEEEEECCGGGCC-----HHHH--HHHHH
T ss_pred CCH-HHHHHHHHHHHH--------------------------------CCCCEEEEEeHHHcCC-----chhH--HHHHH
Confidence 55 788999875533 1589999999999952 3332 45677
Q ss_pred HHHHcC--CeEEEEeccCCCCHHHHHHHHH
Q psy11649 206 LAHVNG--ASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 206 la~~~G--a~l~etSAK~~~nId~Lk~~I~ 233 (890)
++..++ +.+++|||+++.|++++++.+.
T Consensus 139 ~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 139 LEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 777777 8999999999999999987664
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.14 E-value=4.7e-10 Score=135.42 Aligned_cols=116 Identities=10% Similarity=-0.019 Sum_probs=75.1
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC------CC--------------CCCccceeEEEEEEec----cccceEEEEE
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND------TP--------------KPTLALEYIYARKSGK----TVMKDICHLW 88 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~------~~--------------kptigvdY~f~~~~g~----~~~k~~l~Iw 88 (890)
....+|+|+|..|+|||||+++|+.... .. ..++++...+...... ......++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 3467999999999999999999975211 00 1122222222122111 1112489999
Q ss_pred EcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649 89 ELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK 168 (890)
Q Consensus 89 DlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~ 168 (890)
||||+..|...+..+ ++ .+|++|+|+|.++..+. .....|.. +.
T Consensus 88 DTPG~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~~-qt~~~~~~-~~---------------------------- 131 (704)
T 2rdo_7 88 DTPGHVDFTIEVERS----MR--VLDGAVMVYCAVGGVQP-QSETVWRQ-AN---------------------------- 131 (704)
T ss_pred eCCCccchHHHHHHH----HH--HCCEEEEEEeCCCCCcH-HHHHHHHH-HH----------------------------
Confidence 999998887666555 12 49999999999987664 33333422 11
Q ss_pred ccccCCCCcEEEEeecccCC
Q psy11649 169 GLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 169 ~li~~l~IPiIVVgNK~Dl~ 188 (890)
..++|+++|+||+|+.
T Consensus 132 ----~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 132 ----KYKVPRIAFVNKMDRM 147 (704)
T ss_pred ----HcCCCEEEEEeCCCcc
Confidence 1268999999999985
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.13 E-value=1.5e-10 Score=128.60 Aligned_cols=101 Identities=15% Similarity=-0.026 Sum_probs=65.8
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 162 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~ 162 (890)
..+.||||||...-...+.. .+|++|+|+|.+....+ +.+.
T Consensus 172 ~~~iiiDTpGi~~~~~~~~~---------~aD~vl~V~d~~~~~~~--------~~l~---------------------- 212 (355)
T 3p32_A 172 FDVILIETVGVGQSEVAVAN---------MVDTFVLLTLARTGDQL--------QGIK---------------------- 212 (355)
T ss_dssp CCEEEEEECSCSSHHHHHHT---------TCSEEEEEEESSTTCTT--------TTCC----------------------
T ss_pred CCEEEEeCCCCCcHHHHHHH---------hCCEEEEEECCCCCccH--------HHHH----------------------
Confidence 47899999995432222111 38999999998765543 1000
Q ss_pred ccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH----------cCCeEEEEeccCCCCHHHHHHHH
Q psy11649 163 DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV----------NGASLLFHSSLDPGLVKRTRDIL 232 (890)
Q Consensus 163 ~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~----------~Ga~l~etSAK~~~nId~Lk~~I 232 (890)
.....+|+++|+||+|+.. .........++... ++.++++|||++|.|++++.+.|
T Consensus 213 --------~~~~~~p~ivVlNK~Dl~~------~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i 278 (355)
T 3p32_A 213 --------KGVLELADIVVVNKADGEH------HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTV 278 (355)
T ss_dssp --------TTSGGGCSEEEEECCCGGG------HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHH
T ss_pred --------HhHhhcCCEEEEECCCCcC------hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHH
Confidence 0012368999999999852 11122222223222 25789999999999999999999
Q ss_pred HHHH
Q psy11649 233 NHYA 236 (890)
Q Consensus 233 ~~~l 236 (890)
...+
T Consensus 279 ~~~~ 282 (355)
T 3p32_A 279 ERHR 282 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 189
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.09 E-value=2.2e-10 Score=127.62 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=86.5
Q ss_pred ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCc----------CchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649 82 KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRL----------NSLWTEAETFLAKFRAIFESNESVRE 151 (890)
Q Consensus 82 k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp----------~S~~~~L~~wlq~I~e~~~~ll~~~~ 151 (890)
...++|||++|+++++.++..+ ++ ++++||+|+|+++. .++ +....|++.+. ..
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~y----f~--~a~~iIfV~dls~~d~~l~ed~~~nr~-~e~~~~~~~i~---~~------ 255 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHC----FE--GVTAIIFCVALSDYDLVLAEDEEMNRM-HESMKLFDSIC---NN------ 255 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGG----CT--TCSEEEEEEEGGGGGCEETTEEEEEHH-HHHHHHHHHHH---TC------
T ss_pred CeeEEEEeCCCchhhhHHHHHH----Hh--cCCEEEEEEECccccccccccchhhhH-HHHHHHHHHHH---cC------
Confidence 3489999999999999999888 33 69999999999994 444 44444444332 21
Q ss_pred hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchh---------------hhhHHHHHHHHH--------
Q psy11649 152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKK---------------RIAVQCLRYLAH-------- 208 (890)
Q Consensus 152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r---------------~~i~~~lr~la~-------- 208 (890)
....++|++|||||+|+.. ++ .+..+++..++.
T Consensus 256 -------------------~~~~~~piiLv~NK~DL~~-----~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~ 311 (353)
T 1cip_A 256 -------------------KWFTDTSIILFLNKKDLFE-----EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK 311 (353)
T ss_dssp -------------------GGGTTSEEEEEEECHHHHH-----HHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS
T ss_pred -------------------ccccCCcEEEEEECcCchh-----hhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc
Confidence 0112589999999999852 11 134556777765
Q ss_pred ---HcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 209 ---VNGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 209 ---~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
..++.+++|||+++.||+++++.+...+..
T Consensus 312 ~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 312 RKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp CTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 356789999999999999999999887754
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.09 E-value=4.1e-10 Score=114.99 Aligned_cols=151 Identities=15% Similarity=0.041 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CC-CCCcccee--------------EEEEEEe--c-------------cccce
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKND-TP-KPTLALEY--------------IYARKSG--K-------------TVMKD 83 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~-kptigvdY--------------~f~~~~g--~-------------~~~k~ 83 (890)
..+|+|+|.+|||||||+++|++... .. ...+..++ ....... . .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 46899999999999999999987311 01 01111111 0000000 0 11123
Q ss_pred EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649 84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 163 (890)
Q Consensus 84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~ 163 (890)
.+.+|||+|+.. .+.+ +. .+++.+++|+|+++.... +..+...
T Consensus 110 d~iiidt~G~~~----~~~~----~~-~~~~~~i~vvd~~~~~~~---~~~~~~~------------------------- 152 (221)
T 2wsm_A 110 DLLLIENVGNLI----CPVD----FD-LGENYRVVMVSVTEGDDV---VEKHPEI------------------------- 152 (221)
T ss_dssp SEEEEEEEEBSS----GGGG----CC-CSCSEEEEEEEGGGCTTH---HHHCHHH-------------------------
T ss_pred CEEEEeCCCCCC----CCch----hc-cccCcEEEEEeCCCcchh---hhhhhhh-------------------------
Confidence 678899888511 0111 00 137889999999876432 1111110
Q ss_pred cccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc--CCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649 164 EHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN--GASLLFHSSLDPGLVKRTRDILNHYAF 237 (890)
Q Consensus 164 ~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~--Ga~l~etSAK~~~nId~Lk~~I~~~lf 237 (890)
.++|+++|+||+|+.. .+......+...+..+ +++++++||++|.|++++++.|...+.
T Consensus 153 ----------~~~~~iiv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 153 ----------FRVADLIVINKVALAE-----AVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp ----------HHTCSEEEEECGGGHH-----HHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ----------hhcCCEEEEecccCCc-----chhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 1368999999999852 1112233344444443 478999999999999999999988763
No 191
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.07 E-value=4.9e-10 Score=125.44 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCC----------------------CCHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP----------------------GLVKRTRDIL 232 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~----------------------~nId~Lk~~I 232 (890)
..|+++|+||.|.- +....+......++.++...|+.++++||+.+ .|++++.+.+
T Consensus 201 ~KPvi~v~N~~e~d--~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~ 278 (368)
T 2dby_A 201 AKPVIYVANVAEED--LPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAG 278 (368)
T ss_dssp GSCEEEEEECCGGG--TTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred cCCeEEeccccHHh--hcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHH
Confidence 47999999999841 10111123456788899988999999999874 4455544444
Q ss_pred HHHHhccCcccccccCCCCcccccCCCccccccccCC-CCCCCCccccccccccccchhHHHhhcc
Q psy11649 233 NHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HGKDASLESGGRGFNRSRGMKFEKKRGW 297 (890)
Q Consensus 233 ~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r~~~~~~~~~~~~~~~~~~~f~~~~~w 297 (890)
.+++ + ... +-+.|.+.. .+. ++++++..+.+..+|.++...|.++.+|
T Consensus 279 ~~~L-~----------li~--~ft~g~~e~----~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~ 327 (368)
T 2dby_A 279 YRAL-D----------LLT--FFTAGEKEV----RAWTVRRGTKAPRAAGEIHSDMERGFIRAEVI 327 (368)
T ss_dssp HHHT-T----------EEE--EEEESSSCE----EEEEEETTCBHHHHHHHHCHHHHHSCCEEEEE
T ss_pred HHHh-C----------CEE--EECCCCCCc----ceEEecCCCcHHHHHHhhHHHHHhhCeEEEEc
Confidence 4333 1 000 112333322 133 6678888999999999999999999887
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.07 E-value=4.3e-11 Score=132.75 Aligned_cols=56 Identities=21% Similarity=0.065 Sum_probs=36.3
Q ss_pred CCCcEEEEeecccCCCCCCcchhhhhHHHHHH--HHHHcC-CeEEEEeccCCCCHHHHHHHHHH
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRY--LAHVNG-ASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~--la~~~G-a~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.+.|+++|+||+|+.... ......++. +....| +.++++||+++.|++++++.+..
T Consensus 196 ~~~~~i~V~NK~Dl~~~~-----~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEG-----TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TCTTEEEEEECGGGSCTT-----CCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCCceEEEeccccccCcc-----hhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 378999999999996321 101111110 111124 35788999999999999888865
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=3.7e-10 Score=128.35 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=79.1
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHcCCCC---C-------CCCccceeEEEEEEecccc-ceEEEEEEcCCCcch----
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDT---P-------KPTLALEYIYARKSGKTVM-KDICHLWELGSGTSR---- 96 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~---~-------kptigvdY~f~~~~g~~~~-k~~l~IwDlpG~~~~---- 96 (890)
..-.++|+|+|++|||||||++.|++.... + .++++.++ ......... ...+.|||++|....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~--i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~ 105 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ--SKVLIKEGGVQLLLTIVDTPGFGDAVDNS 105 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEE--EECC------CEEEEEEECC---------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeee--EEEEEecCCcccceeeeechhhhhhccch
Confidence 445689999999999999999999985321 1 12222221 011111111 127899999997543
Q ss_pred ---hhHHh-------hh-h------ccccccccCcEEEEEEeCCCc-CchHHHHH-HHHHHHHHHHhhhhhhhhhccccc
Q psy11649 97 ---LEVAS-------LF-S------SFSLTAQSGFTLVLMLDLSRL-NSLWTEAE-TFLAKFRAIFESNESVREKRGSFE 157 (890)
Q Consensus 97 ---~~Li~-------~~-r------~~~~~~~~ad~IIIV~DlSnp-~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~ 157 (890)
..+.. .+ . ...+. ++++.+++|+.+.. .++ +.+. .|+..+.
T Consensus 106 ~~~~~i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L-~~~d~~~lk~L~----------------- 165 (418)
T 2qag_C 106 NCWQPVIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGL-KPLDIEFMKRLH----------------- 165 (418)
T ss_dssp --CHHHHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSC-CHHHHHHHHHHT-----------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCC-CHHHHHHHHHHh-----------------
Confidence 12211 11 0 01112 35555555555442 344 3333 3444321
Q ss_pred cccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 158 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 158 ~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
. ++|+|+|+||+|+.. ..+.......++..+..+|+.++++|++++.+++++...|...
T Consensus 166 ---------------~-~v~iIlVinK~Dll~---~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 166 ---------------E-KVNIIPLIAKADTLT---PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp ---------------T-TSEEEEEEESTTSSC---HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred ---------------c-cCcEEEEEEcccCcc---HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 1 589999999999862 1222222367888888899999999999999998765555443
No 194
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.02 E-value=6.4e-10 Score=125.71 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=85.3
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCC----------cCchHHHHHHHHHHHHHHHhhhhhhhhh
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSR----------LNSLWTEAETFLAKFRAIFESNESVREK 152 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSn----------p~S~~~~L~~wlq~I~e~~~~ll~~~~~ 152 (890)
..++||||+|+++++.++..| ++ +++++|+|||+|+ ..+| +.+..|++.+...
T Consensus 217 v~l~iwDtaGQe~~r~~w~~y----f~--~a~~iIfV~dis~ydq~l~ed~~~ns~-~e~~~~~~~i~~~---------- 279 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQC----FN--DVTAIIFVVASSSYNMVIREDNQTNRL-QEALNLFKSIWNN---------- 279 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGG----TT--TCCEEEEEEETTGGGCBCTTTSCSBHH-HHHHHHHHHHHTC----------
T ss_pred ccceecccchhhhhhhhhHhh----cc--CCCEEEEEEECcccccccccccccchH-HHHHHHHHHHHhc----------
Confidence 589999999999999999888 33 6999999999999 7787 6666676644321
Q ss_pred ccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhh---h---------------------------hHHH
Q psy11649 153 RGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKR---I---------------------------AVQC 202 (890)
Q Consensus 153 ~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~---~---------------------------i~~~ 202 (890)
....++|++|||||+|+.. ++. . ..+.
T Consensus 280 ------------------~~~~~~piiLvgNK~DL~~-----~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~ 336 (402)
T 1azs_C 280 ------------------RWLRTISVILFLNKQDLLA-----EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTR 336 (402)
T ss_dssp ------------------TTCSSCCEEEEEECHHHHH-----HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHH
T ss_pred ------------------ccCCCCeEEEEEEChhhhh-----hhhcccccchhhccccccccccccccccccCCcccHHH
Confidence 0112589999999999852 111 0 1234
Q ss_pred HHHHH-----HH--------cCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 203 LRYLA-----HV--------NGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 203 lr~la-----~~--------~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
+..++ .. .++.+++|||+++.||+.+++.+...+..
T Consensus 337 a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 337 AKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 44443 22 25667899999999999999988877643
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.00 E-value=1.3e-09 Score=111.74 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=43.5
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc--CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN--GASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~--Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.|.++|+||+|+.. .+......+..++..+ +++++++||++|.|++++++.|...+
T Consensus 164 ~~~~iiv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLAD-----AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHH-----HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCc-----hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 467899999999842 2223345566666654 67899999999999999999998765
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.97 E-value=2.4e-09 Score=118.83 Aligned_cols=101 Identities=13% Similarity=-0.070 Sum_probs=59.4
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 162 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~ 162 (890)
..+.++||+|...-...+ .. .+|++++|+|.+++... +.+.. .
T Consensus 167 ~~~iliDT~Gi~~~~~~l--~~-------~~d~vl~V~d~~~~~~~--------~~i~~---~----------------- 209 (349)
T 2www_A 167 YDIILIETVGVGQSEFAV--AD-------MVDMFVLLLPPAGGDEL--------QGIKR---G----------------- 209 (349)
T ss_dssp CSEEEEECCCC--CHHHH--HT-------TCSEEEEEECCC---------------------------------------
T ss_pred CCEEEEECCCcchhhhhH--Hh-------hCCEEEEEEcCCcchhH--------HHhHH---H-----------------
Confidence 368999999963211111 11 38999999999876432 11111 0
Q ss_pred ccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHH----------HcCCeEEEEeccCCCCHHHHHHHH
Q psy11649 163 DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH----------VNGASLLFHSSLDPGLVKRTRDIL 232 (890)
Q Consensus 163 ~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~----------~~Ga~l~etSAK~~~nId~Lk~~I 232 (890)
+ ...|.++|+||+|+.. ..........+.. .++.++++|||+++.|++++.+.|
T Consensus 210 --------i--l~~~~ivVlNK~Dl~~------~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I 273 (349)
T 2www_A 210 --------I--IEMADLVAVTKSDGDL------IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKM 273 (349)
T ss_dssp -----------CCSCSEEEECCCSGGG------HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHH
T ss_pred --------H--HhcCCEEEEeeecCCC------chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHH
Confidence 0 1358899999999852 1111111222221 224678999999999999999999
Q ss_pred HHHH
Q psy11649 233 NHYA 236 (890)
Q Consensus 233 ~~~l 236 (890)
...+
T Consensus 274 ~~~~ 277 (349)
T 2www_A 274 KDFQ 277 (349)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.95 E-value=3e-09 Score=130.76 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=76.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC------------------CCCCCccceeEEEEEEec-------------cccc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND------------------TPKPTLALEYIYARKSGK-------------TVMK 82 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------------------~~kptigvdY~f~~~~g~-------------~~~k 82 (890)
...+|+|+|..|+|||||+++|+.... ....++++...+...... ....
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 357999999999999999999986310 011222221111111111 1113
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 162 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~ 162 (890)
..++||||||+..|...+..+ ++ .+|++|+|+|+++..++ .....|.+..
T Consensus 98 ~~i~liDTPG~~df~~~~~~~----l~--~aD~ailVvDa~~g~~~-qt~~~~~~~~----------------------- 147 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAA----LR--VTDGALVVVDTIEGVCV-QTETVLRQAL----------------------- 147 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHH----HH--TCSEEEEEEETTTBSCH-HHHHHHHHHH-----------------------
T ss_pred ceEEEEECcCchhhHHHHHHH----HH--hCCEEEEEEeCCCCCCH-HHHHHHHHHH-----------------------
Confidence 489999999999987777666 22 49999999999998887 4544454321
Q ss_pred ccccccccccCCCCcEEEEeecccCC
Q psy11649 163 DEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 163 ~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
..++|+++|+||+|+.
T Consensus 148 ----------~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 148 ----------GERIKPVVVINKVDRA 163 (842)
T ss_dssp ----------HTTCEEEEEEECHHHH
T ss_pred ----------HcCCCeEEEEECCCcc
Confidence 1268999999999985
No 198
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.95 E-value=1.4e-09 Score=121.55 Aligned_cols=122 Identities=13% Similarity=0.084 Sum_probs=78.1
Q ss_pred ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCC----------cCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649 82 KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSR----------LNSLWTEAETFLAKFRAIFESNESVRE 151 (890)
Q Consensus 82 k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSn----------p~S~~~~L~~wlq~I~e~~~~ll~~~~ 151 (890)
...++|||++|+++++.++..+ ++ +++++|+|+|+++ ..++ .....|+..+...
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~----f~--~~~~iIfv~dls~~dq~l~ed~~~n~~-~es~~~~~~i~~~--------- 263 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFEC----FD--SVTSILFLVSSSEFDQVLMEDRQTNRL-TESLNIFETIVNN--------- 263 (362)
T ss_dssp TEEEEEEEECC-------CTTS----CT--TCCEEEEEEETTCTTCEETTEEEEEHH-HHHHHHHHHHHTC---------
T ss_pred CeEEEEEeccchhhhhhhHHHH----hC--CCCEEEEEEECccccccccccccccHH-HHHHHHHHHHhcc---------
Confidence 3489999999999999888887 33 6999999999999 6676 4445555433221
Q ss_pred hccccccccccccccccccccCCCCcEEEEeecccCCCCC----------Cc-chhhhhHHHHHHHH--------H---H
Q psy11649 152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL----------EP-NKKRIAVQCLRYLA--------H---V 209 (890)
Q Consensus 152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~----------d~-e~r~~i~~~lr~la--------~---~ 209 (890)
....++|+|||+||+|+..+- .+ .......+++..++ . .
T Consensus 264 -------------------~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~ 324 (362)
T 1zcb_A 264 -------------------RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQ 324 (362)
T ss_dssp -------------------GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC-
T ss_pred -------------------hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCC
Confidence 011258999999999986210 00 00013345555554 1 3
Q ss_pred cCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 210 NGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 210 ~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
.++.+++|||+++.|++++++.+...+..
T Consensus 325 ~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 325 RPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp -CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 46789999999999999999998887754
No 199
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.93 E-value=1.4e-09 Score=121.22 Aligned_cols=121 Identities=14% Similarity=0.209 Sum_probs=82.6
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCC----------CcCchHHHHHHHHHHHHHHHhhhhhhhhh
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS----------RLNSLWTEAETFLAKFRAIFESNESVREK 152 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlS----------np~S~~~~L~~wlq~I~e~~~~ll~~~~~ 152 (890)
..++||||+|+++++.++..+ ++ +++++|+|||++ +..++ +....|++.+....
T Consensus 183 v~l~iwDtaGQe~~r~~~~~y----~~--~~~~iI~v~dis~ydq~l~e~~~~~s~-~~~~~~~~~i~~~~--------- 246 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRKWIHL----FE--GVTAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQP--------- 246 (354)
T ss_dssp -EEEEEEECCSTTGGGGTGGG----CT--TEEEEEEEEEGGGTTCBCSSCTTSBHH-HHHHHHHHHHHTCG---------
T ss_pred eeeEEEECCCchhhhHHHHHH----hC--CCCEEEEEEECcccccccccccchhHH-HHHHHHHHHHHhcc---------
Confidence 489999999999999999888 33 699999999999 67776 55555555432210
Q ss_pred ccccccccccccccccccccCCCCcEEEEeecccCCCC-CC--c--------c-----hhhhhHHHHHHHHHH-------
Q psy11649 153 RGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-LE--P--------N-----KKRIAVQCLRYLAHV------- 209 (890)
Q Consensus 153 ~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-~d--~--------e-----~r~~i~~~lr~la~~------- 209 (890)
...++|++|||||+|+.++ .. + + ......+++.+++..
T Consensus 247 -------------------~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~ 307 (354)
T 2xtz_A 247 -------------------CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY 307 (354)
T ss_dssp -------------------GGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhh
Confidence 1125899999999998521 00 0 0 000123445555332
Q ss_pred ---------cCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649 210 ---------NGASLLFHSSLDPGLVKRTRDILNHYAFS 238 (890)
Q Consensus 210 ---------~Ga~l~etSAK~~~nId~Lk~~I~~~lf~ 238 (890)
..+.+++|||+++.||+++++.+...+..
T Consensus 308 ~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 12346899999999999999988877643
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.89 E-value=2.7e-09 Score=117.89 Aligned_cols=104 Identities=11% Similarity=-0.020 Sum_probs=63.0
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 162 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~ 162 (890)
..+.||||||.......+.. .+|++++|+|.+....+ +.+....
T Consensus 149 ~~i~liDTpG~~~~~~~~~~---------~aD~vl~Vvd~~~~~~~--------~~l~~~~------------------- 192 (341)
T 2p67_A 149 YDVVIVETVGVGQSETEVAR---------MVDCFISLQIAGGGDDL--------QGIKKGL------------------- 192 (341)
T ss_dssp CSEEEEEEECCTTHHHHHHT---------TCSEEEEEECC--------------CCCCHHH-------------------
T ss_pred CCEEEEeCCCccchHHHHHH---------hCCEEEEEEeCCccHHH--------HHHHHhh-------------------
Confidence 37999999997654433222 39999999998765332 1000000
Q ss_pred ccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-------CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649 163 DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-------GASLLFHSSLDPGLVKRTRDILNHY 235 (890)
Q Consensus 163 ~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-------Ga~l~etSAK~~~nId~Lk~~I~~~ 235 (890)
.++|.++|+||+|+... .........++.....+ ..+++++||++|.|++++.+.|...
T Consensus 193 -----------~~~p~ivv~NK~Dl~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 193 -----------MEVADLIVINKDDGDNH---TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp -----------HHHCSEEEECCCCTTCH---HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred -----------hcccCEEEEECCCCCCh---HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 13688999999998520 01111111233222222 4578999999999999999999887
Q ss_pred H
Q psy11649 236 A 236 (890)
Q Consensus 236 l 236 (890)
+
T Consensus 259 ~ 259 (341)
T 2p67_A 259 K 259 (341)
T ss_dssp H
T ss_pred H
Confidence 5
No 201
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.85 E-value=1.2e-08 Score=119.87 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=73.8
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEecc----------------------------
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKT---------------------------- 79 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~---------------------------- 79 (890)
....+|+|+|.+|||||||+|+|++... ...|++..... ...+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~--i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA--VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEE--EECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEE--EEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3467999999999999999999998642 33344321100 000000
Q ss_pred --------ccc--eEEEEEEcCCCcc-----------hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHH
Q psy11649 80 --------VMK--DICHLWELGSGTS-----------RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAK 138 (890)
Q Consensus 80 --------~~k--~~l~IwDlpG~~~-----------~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~ 138 (890)
... ..+.+|||||... +..+...+ +. .+|++|+|+|.+++... +....|++.
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~----l~--~aD~il~VvDa~~~~~~-~~~~~~l~~ 213 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWF----AE--RVDLIILLFDAHKLEIS-DEFSEAIGA 213 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHH----HH--HCSEEEEEEETTSCCCC-HHHHHHHHH
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHH----HH--hCCEEEEEEeCCcCCCC-HHHHHHHHH
Confidence 000 2589999999865 33444444 11 48999999999986543 445555542
Q ss_pred HHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649 139 FRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 139 I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~ 188 (890)
+ ...+.|+++|+||+|+.
T Consensus 214 l--------------------------------~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 214 L--------------------------------RGHEDKIRVVLNKADMV 231 (550)
T ss_dssp T--------------------------------TTCGGGEEEEEECGGGS
T ss_pred H--------------------------------HhcCCCEEEEEECCCcc
Confidence 2 12357999999999986
No 202
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.83 E-value=6.4e-09 Score=107.79 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=87.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
++||+.+|+..+..+.+. -.. ...++++|+|++.+.++ +.+++|+..++.+...
T Consensus 64 l~iwDtaGqe~~~~l~~~--~~~----~a~~~ilv~di~~~~Sf-~~i~~~~~~i~~~~~~------------------- 117 (216)
T 4dkx_A 64 LQLWDTAGLERFRSLIPS--YIR----DSAAAVVVYDITNVNSF-QQTTKWIDDVRTERGS------------------- 117 (216)
T ss_dssp EEEECCSCTTTCGGGHHH--HHT----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-------------------
T ss_pred EEEEECCCchhhhhHHHH--Hhc----cccEEEEEeecchhHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 489999999877766555 122 23389999999999999 9999999887664321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.+|+||||+|+|+... +..-....+.||.++|+..|.||+|.
T Consensus 118 ---------------------------------~~piilVgNK~Dl~~~-----r~V~~~e~~~~a~~~~~~~~e~SAkt 159 (216)
T 4dkx_A 118 ---------------------------------DVIIMLVGNKTDLADK-----RQVSIEEGERKAKELNVMFIETSAKA 159 (216)
T ss_dssp ---------------------------------SSEEEEEEECTTCGGG-----CCSCHHHHHHHHHHHTCEEEEEBTTT
T ss_pred ---------------------------------CCeEEEEeeccchHhc-----CcccHHHHhhHHHHhCCeeEEEeCCC
Confidence 3799999999998632 11223446788999999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCC
Q psy11649 553 PGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~ 571 (890)
+.|++.++..|...+.+..
T Consensus 160 g~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp TBSHHHHHHHHHHHC----
T ss_pred CcCHHHHHHHHHHHHHhhh
Confidence 9999999999999887644
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.78 E-value=2.8e-08 Score=104.14 Aligned_cols=117 Identities=11% Similarity=-0.047 Sum_probs=67.2
Q ss_pred EEEEEEcCCCcchhhHHhh---hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649 84 ICHLWELGSGTSRLEVASL---FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 160 (890)
Q Consensus 84 ~l~IwDlpG~~~~~~Li~~---~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~ 160 (890)
.+.||||||+......... .. ..+. . +++|+|+|.+...+. ..+...........
T Consensus 110 d~iiiDtpG~~~~~~~~~l~~~~~-~~~~--~-~~iv~vvD~~~~~~~-~~~~~~~~~~~~~~----------------- 167 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFGVRLM-ENLP--Y-PLVVYISDPEILKKP-NDYCFVRFFALLID----------------- 167 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHH-HTSS--S-CEEEEEECGGGCCSH-HHHHHHHHHHHHHH-----------------
T ss_pred CEEEEeCCCccchhhhhhhHHHHH-HHHh--h-ceEEeccchhhhcCH-HHHHHHHHHHHHHh-----------------
Confidence 6899999998765433211 10 1122 4 788889998765443 12221111111100
Q ss_pred ccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHH-------HH-----------------HHHHcC--CeE
Q psy11649 161 TADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-------RY-----------------LAHVNG--ASL 214 (890)
Q Consensus 161 ~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~l-------r~-----------------la~~~G--a~l 214 (890)
...++|+++|+||+|+... .......+.+ .. ++..++ +++
T Consensus 168 -----------~~~~~p~~iv~NK~D~~~~---~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (262)
T 1yrb_A 168 -----------LRLGATTIPALNKVDLLSE---EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRV 233 (262)
T ss_dssp -----------HHHTSCEEEEECCGGGCCH---HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCC
T ss_pred -----------cccCCCeEEEEeccccccc---ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccc
Confidence 0125799999999998531 1010011111 01 123443 479
Q ss_pred EEEeccCCCCHHHHHHHHHHHH
Q psy11649 215 LFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 215 ~etSAK~~~nId~Lk~~I~~~l 236 (890)
+++||+++.|++++++.|...+
T Consensus 234 ~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 234 LYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEecCcccHHHHHHHHHHHh
Confidence 9999999999999999998776
No 204
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.77 E-value=2.8e-08 Score=97.66 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=73.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|...+..+... .+. ..-++|+|+|++.|.++ +.+..|+..++.+..
T Consensus 59 ~~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 111 (183)
T 2fu5_C 59 LQIWDTAGQERFRTITTA--YYR----GAMGIMLVYDITNEKSF-DNIRNWIRNIEEHAS-------------------- 111 (183)
T ss_dssp EEEEEC---------CCT--TTT----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred EEEEcCCCChhhhhhHHH--HHh----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 589999998766655444 222 12378999999999987 888889877754211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...-+ .-...++.+|..+|+..|.||++.
T Consensus 112 --------------------------------~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~ 154 (183)
T 2fu5_C 112 --------------------------------ADVEKMILGNKCDVNDKRQ-----VSKERGEKLALDYGIKFMETSAKA 154 (183)
T ss_dssp --------------------------------TTCEEEEEEEC--CCSCCC-----SCHHHHHHHHHHHTCEEEECCC--
T ss_pred --------------------------------CCCCEEEEEECccCCccCc-----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence 1479999999999974211 112345678888999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|...++.
T Consensus 155 ~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 155 NINVENAFFTLARDIKA 171 (183)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 205
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.75 E-value=3.1e-08 Score=96.50 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=90.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|+..+..+... .+.. .-++++|+|.+.|.++ +.++.|+..++.+...
T Consensus 57 ~~~~~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------ 111 (178)
T 2hxs_A 57 TLQIWDIGGQTIGGKMLDK--YIYG----AQGVLLVYDITNYQSF-ENLEDWYTVVKKVSEE------------------ 111 (178)
T ss_dssp EEEEEECTTCCTTCTTHHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHHH------------------
T ss_pred EEEEEECCCCccccchhhH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcc------------------
Confidence 3589999999766655544 2221 2378999999999986 8899999888776542
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~ 550 (890)
. .+.| +|||+||+|+...-. .-...++.+|..+|+..+.+|+
T Consensus 112 ----------~----------------------~~~~~iilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
T 2hxs_A 112 ----------S----------------------ETQPLVALVGNKIDLEHMRT-----IKPEKHLRFCQENGFSSHFVSA 154 (178)
T ss_dssp ----------H----------------------TCCCEEEEEEECGGGGGGCS-----SCHHHHHHHHHHHTCEEEEECT
T ss_pred ----------c----------------------CCCCeEEEEEEccccccccc-----cCHHHHHHHHHHcCCcEEEEeC
Confidence 0 0234 899999999974211 1123456778889999999999
Q ss_pred CChhhHHHHHHHHhhhhcCCCCC
Q psy11649 551 LDPGLVKRTRDILNHYAFSSHLA 573 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~fg~~~~ 573 (890)
+.+.|++.++..|...+++.+..
T Consensus 155 ~~~~gi~~l~~~l~~~~~~~~~~ 177 (178)
T 2hxs_A 155 KTGDSVFLCFQKVAAEILGIKLN 177 (178)
T ss_dssp TTCTTHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999887653
No 206
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.75 E-value=1.9e-08 Score=102.86 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=90.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..||+.+|+..+..+... .+.. .-++|+|+|++.+.++-+.++.|+..++.+..
T Consensus 77 l~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-------------------- 130 (214)
T 3q3j_B 77 LSLWDTSGSPYYDNVRPL--CYSD----SDAVLLCFDISRPETVDSALKKWRTEILDYCP-------------------- 130 (214)
T ss_dssp EEEEEECCSGGGTTTGGG--GCTT----CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT--------------------
T ss_pred EEEEECCCCHhHHHHHHH--HcCC----CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC--------------------
Confidence 589999999777666655 2332 23799999999999995568999988875311
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC-c
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA-S 544 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA-s 544 (890)
++|+||||||+|+..+...+. .....+.++.+|..+|+ .
T Consensus 131 ---------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (214)
T 3q3j_B 131 ---------------------------------STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI 177 (214)
T ss_dssp ---------------------------------TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred ---------------------------------CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence 378999999999975422111 11234567889999999 8
Q ss_pred eeEeccCChhh-HHHHHHHHhhhhcCCC
Q psy11649 545 LLFHSSLDPGL-VKRTRDILNHYAFSSH 571 (890)
Q Consensus 545 L~ftS~K~~~n-~~~l~kyi~hr~fg~~ 571 (890)
.|.||+|.+.| ++.++..|...++...
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 99999999998 9999999999887643
No 207
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.74 E-value=1.8e-08 Score=96.95 Aligned_cols=116 Identities=13% Similarity=0.153 Sum_probs=86.5
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++++|+|.+.|.++ +.+..|+..+..+..
T Consensus 53 ~~~~~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 106 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPX--YYRN----AQAALVVYDVTKPQSF-IKARHWVKELHEQAS------------------- 106 (170)
T ss_dssp EEEEEEECCSGGGGGGHHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred EEEEEECCCChhhhhhhhh--hhcc----CcEEEEEEecCChHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3689999998776665544 2222 2378999999999887 888888877665211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|++||+||+|+...-+. .....+..+.+|..+|+..+.+|++
T Consensus 107 ---------------------------------~~~piilv~nK~Dl~~~~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1ek0_A 107 ---------------------------------KDIIIALVGNKIDXLQEGGE--RKVAREEGEKLAEEKGLLFFETSAK 151 (170)
T ss_dssp ---------------------------------TTCEEEEEEECGGGGGSSCC--CCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred ---------------------------------CCCcEEEEEECCCccccccc--cCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 14789999999999853211 1223445677888899999999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++.+|...+.
T Consensus 152 ~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 152 TGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TCTTHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987764
No 208
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.73 E-value=8.6e-08 Score=92.47 Aligned_cols=112 Identities=14% Similarity=0.221 Sum_probs=80.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+. ..-++++|+|++.+.++ +.++.|+..++.+...
T Consensus 57 l~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 110 (170)
T 1z08_A 57 LAIWDTAGQERFHALGPI--YYR----DSNGAILVYDITDEDSF-QKVKNWVKELRKMLGN------------------- 110 (170)
T ss_dssp EEEEECCCC-------CC--SST----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHGG-------------------
T ss_pred EEEEECCCcHhhhhhHHH--Hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 589999998766655444 222 12378999999999987 8888998887654321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
++|++||+||+|+...-.- -...++.+|..+|+..+.+|++.
T Consensus 111 ---------------------------------~~piilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1z08_A 111 ---------------------------------EICLCIVGNKIDLEKERHV-----SIQEAESYAESVGAKHYHTSAKQ 152 (170)
T ss_dssp ---------------------------------GSEEEEEEECGGGGGGCCS-----CHHHHHHHHHHTTCEEEEEBTTT
T ss_pred ---------------------------------CCeEEEEEECccccccccc-----CHHHHHHHHHHcCCeEEEecCCC
Confidence 3789999999999742111 12345678888999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.++..|...+.
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 153 NKGIEELFLDLCKRMI 168 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988765
No 209
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.72 E-value=4.2e-08 Score=97.81 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=87.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+.. .-++|+|+|++.+.++-+..+.|+..++.+..
T Consensus 73 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------------- 126 (194)
T 3reg_A 73 LHLWDTAGQEEYDRLRPL--SYAD----SDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-------------------- 126 (194)
T ss_dssp EEEEEECCSGGGTTTGGG--GCTT----CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--------------------
T ss_pred EEEEECCCcHHHHHHhHh--hccC----CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--------------------
Confidence 589999998776665554 2222 23799999999999984434888887764211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc-eeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs-L~ftS~K 551 (890)
++|+||||||+|+..+ +........++.+|..+|+. .+.||++
T Consensus 127 ---------------------------------~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 127 ---------------------------------TAKTVLVGLKVDLRKD---GSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp ---------------------------------TSEEEEEEECGGGCCT---TTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred ---------------------------------CCCEEEEEEChhhccC---CCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 3789999999999742 11222334567788999999 9999999
Q ss_pred ChhhHHHHHHHHhhhhcCC
Q psy11649 552 DPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~ 570 (890)
.+.|++.++..|...++.-
T Consensus 171 ~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.71 E-value=5.9e-08 Score=107.23 Aligned_cols=102 Identities=10% Similarity=-0.084 Sum_probs=60.9
Q ss_pred eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649 83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 162 (890)
Q Consensus 83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~ 162 (890)
..+.++||+|...-...+.. .+|.+++|+|.+..+.. +.+.+..
T Consensus 148 ~~~iliDT~Gi~~~~~~v~~---------~~d~vl~v~d~~~~~~~--------~~i~~~i------------------- 191 (337)
T 2qm8_A 148 FDVILVETVGVGQSETAVAD---------LTDFFLVLMLPGAGDEL--------QGIKKGI------------------- 191 (337)
T ss_dssp CCEEEEEECSSSSCHHHHHT---------TSSEEEEEECSCC--------------CCTTH-------------------
T ss_pred CCEEEEECCCCCcchhhHHh---------hCCEEEEEEcCCCcccH--------HHHHHHH-------------------
Confidence 37899999997542222211 38999999998654321 1010000
Q ss_pred ccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH----------cCCeEEEEeccCCCCHHHHHHHH
Q psy11649 163 DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV----------NGASLLFHSSLDPGLVKRTRDIL 232 (890)
Q Consensus 163 ~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~----------~Ga~l~etSAK~~~nId~Lk~~I 232 (890)
..+|.++|.||+|+.. .........++++.. ++.+++++||+++.|+++|.+.|
T Consensus 192 -----------~~~~~ivvlNK~Dl~~-----~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 192 -----------FELADMIAVNKADDGD-----GERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRI 255 (337)
T ss_dssp -----------HHHCSEEEEECCSTTC-----CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHH
T ss_pred -----------hccccEEEEEchhccC-----chhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHH
Confidence 0245677889999742 122222222333221 14578999999999999999999
Q ss_pred HHHH
Q psy11649 233 NHYA 236 (890)
Q Consensus 233 ~~~l 236 (890)
....
T Consensus 256 ~~~~ 259 (337)
T 2qm8_A 256 EDHR 259 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 211
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.71 E-value=2.4e-08 Score=120.70 Aligned_cols=107 Identities=16% Similarity=0.064 Sum_probs=65.5
Q ss_pred EEEEEEcCCCcc-------------hhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhh
Q psy11649 84 ICHLWELGSGTS-------------RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESV 149 (890)
Q Consensus 84 ~l~IwDlpG~~~-------------~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~ 149 (890)
.+.++||||..+ +..++..| . ..+|++++|+|.++...- .....+++.
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~------~~aDlIL~VVDAs~~~~~-~d~l~ll~~----------- 212 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT------KENCLILAVSPANSDLAN-SDALKIAKE----------- 212 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT------STTEEEEEEEETTSCSSS-CHHHHHHHH-----------
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh------cCCcEEEEEEcCCCCcch-hHHHHHHHH-----------
Confidence 578999999654 12233333 2 148999999999986543 111122221
Q ss_pred hhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHH-H-HHHHcC-CeEEEEeccCCCCHH
Q psy11649 150 REKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-Y-LAHVNG-ASLLFHSSLDPGLVK 226 (890)
Q Consensus 150 ~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr-~-la~~~G-a~l~etSAK~~~nId 226 (890)
+...+.|+++|.||+|+..... . .....+ + +...+| +.++.+||+++.|++
T Consensus 213 ---------------------L~~~g~pvIlVlNKiDlv~~~~---~--~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvd 266 (772)
T 3zvr_A 213 ---------------------VDPQGQRTIGVITKLDLMDEGT---D--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 266 (772)
T ss_dssp ---------------------HCTTCSSEEEEEECTTSSCTTC---C--SHHHHTTCSSCCSSCEEECCCCCCEESSSSE
T ss_pred ---------------------HHhcCCCEEEEEeCcccCCcch---h--hHHHHHHHhhhhhccCCceEEecccccccch
Confidence 2234789999999999973211 1 111111 0 001123 357889999999999
Q ss_pred HHHHHHHH
Q psy11649 227 RTRDILNH 234 (890)
Q Consensus 227 ~Lk~~I~~ 234 (890)
.|.+.|..
T Consensus 267 eL~eaI~~ 274 (772)
T 3zvr_A 267 DITAALAA 274 (772)
T ss_dssp EHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999876
No 212
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.71 E-value=2.9e-08 Score=96.99 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=86.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.++.|+..++.+..
T Consensus 62 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 115 (181)
T 2efe_B 62 KFEIWDTAGQERYHSLAPM--YYRG----AAAAIIVFDVTNQASF-ERAKKWVQELQAQGN------------------- 115 (181)
T ss_dssp EEEEEECCCSGGGGGGTHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred EEEEEeCCCChhhhhhhHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999998766665554 2222 2378999999999987 888888877655211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|++||+||+|+...-+ .-...++.+|..+|+..|.+|++
T Consensus 116 ---------------------------------~~~p~i~v~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 157 (181)
T 2efe_B 116 ---------------------------------PNMVMALAGNKSDLLDARK-----VTAEDAQTYAQENGLFFMETSAK 157 (181)
T ss_dssp ---------------------------------TTCEEEEEEECTTCTTTCC-----SCHHHHHHHHHHTTCEEEECCSS
T ss_pred ---------------------------------CCCcEEEEEECCccccccc-----CCHHHHHHHHHHcCCEEEEEECC
Confidence 0378999999999964211 11235667888899999999999
Q ss_pred ChhhHHHHHHHHhhhhcCCC
Q psy11649 552 DPGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~~ 571 (890)
.+.|++.++.+|...+...+
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 158 TATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SCTTHHHHHHHHHHTCC---
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 213
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.71 E-value=7.8e-08 Score=92.41 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=84.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++++|+|++.|.++ +.++.|+..+..+..
T Consensus 56 ~~~~~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 109 (170)
T 1r2q_A 56 KFEIWDTAGQERYHSLAPM--YYRG----AQAAIVVYDITNEESF-ARAKNWVKELQRQAS------------------- 109 (170)
T ss_dssp EEEEEEECCSGGGGGGHHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred EEEEEeCCCcHHhhhhhHH--hccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999998776665444 2221 2378999999999987 888888876654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|+||||||+|+...-... ...++.+|..+|+..+.+|++
T Consensus 110 ---------------------------------~~~~iilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1r2q_A 110 ---------------------------------PNIVIALSGNKADLANKRAVD-----FQEAQSYADDNSLLFMETSAK 151 (170)
T ss_dssp ---------------------------------TTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHHTTCEEEECCTT
T ss_pred ---------------------------------CCCcEEEEEECccCccccccC-----HHHHHHHHHHcCCeEEEEeCC
Confidence 147999999999996421111 234567888899999999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++.+|...+.
T Consensus 152 ~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 152 TSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TCTTHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 214
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.70 E-value=2.2e-08 Score=97.32 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=85.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.++.|+..++.+..
T Consensus 65 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 118 (179)
T 1z0f_A 65 KLQIWDTAGQERFRAVTRS--YYRG----AAGALMVYDITRRSTY-NHLSSWLTDARNLTN------------------- 118 (179)
T ss_dssp EEEEEECTTGGGTCHHHHH--HHHT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred EEEEEECCCChHhhhhHHH--Hhcc----CCEEEEEEeCcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999998766655444 2222 2379999999999887 888888877654211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|++||+||+|+...-+ .-...++.+|..+|+..+.+|++
T Consensus 119 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T 1z0f_A 119 ---------------------------------PNTVIILIGNKADLEAQRD-----VTYEEAKQFAEENGLLFLEASAK 160 (179)
T ss_dssp ---------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECCTT
T ss_pred ---------------------------------CCCcEEEEEECcccccccc-----cCHHHHHHHHHHcCCEEEEEeCC
Confidence 1479999999999964211 11235677888899999999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++++|...++
T Consensus 161 ~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 161 TGENVEDAFLEAAKKIY 177 (179)
T ss_dssp TCTTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998875
No 215
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.70 E-value=9.2e-08 Score=93.08 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=85.4
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++++|+|.+.|.++ +.+..|+..++.+..
T Consensus 59 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 112 (181)
T 3tw8_B 59 KLQIWDTAGQERFRTITST--YYRG----THGVIVVYDVTSAESF-VNVKRWLHEINQNCD------------------- 112 (181)
T ss_dssp EEEEEEETTGGGCSSCCGG--GGTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHCT-------------------
T ss_pred EEEEEcCCCchhhhhhHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence 3689999998766655544 2222 2379999999999887 778888877754111
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
++|+|||+||+|+...-. .-...++.+|..+|+.++.+|++
T Consensus 113 ----------------------------------~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 113 ----------------------------------DVCRILVGNKNDDPERKV-----VETEDAYKFAGQMGIQLFETSAK 153 (181)
T ss_dssp ----------------------------------TSEEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCCEEECBTT
T ss_pred ----------------------------------CCCEEEEEECCCCchhcc-----cCHHHHHHHHHHcCCeEEEEECC
Confidence 378999999999864211 11234678899999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.+++.|...+..
T Consensus 154 ~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLR 171 (181)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 216
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.70 E-value=5.1e-08 Score=95.58 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=86.5
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+. ..-++++|+|++.|.++ +.+..|+..+..+...
T Consensus 56 ~~l~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 109 (181)
T 3t5g_A 56 LQLVDTAGQDEYSIFPQT--YSI----DINGYILVYSVTSIKSF-EVIKVIHGKLLDMVGK------------------- 109 (181)
T ss_dssp EEEEECCCCCTTCCCCGG--GTT----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHC---------------------
T ss_pred EEEEeCCCchhhhHHHHH--HHh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 489999998766554444 122 12378999999999988 8888898766553321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...- ......++.+|..+|+..+.+|++.
T Consensus 110 --------------------------------~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (181)
T 3t5g_A 110 --------------------------------VQIPIMLVGNKKDLHMER-----VISYEEGKALAESWNAAFLESSAKE 152 (181)
T ss_dssp ----------------------------------CCEEEEEECTTCTTTC-----CSCHHHHHHHHHHTTCEEEECCTTS
T ss_pred --------------------------------CCCCEEEEEECccchhcc-----eecHHHHHHHHHHhCCcEEEEecCC
Confidence 147999999999985321 1223457788999999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCC
Q psy11649 553 PGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~ 571 (890)
+.|++.++..|...+....
T Consensus 153 ~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 153 NQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999988644
No 217
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.69 E-value=8e-08 Score=93.75 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=80.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++|+|+|++.|.++ +.++.|+..++.+..
T Consensus 62 ~~~~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 114 (180)
T 2g6b_A 62 LQMWDTAGQERFRSVTHA--YYRD----AHALLLLYDVTNKASF-DNIQAWLTEIHEYAQ-------------------- 114 (180)
T ss_dssp EEEEECCCC--------C--CGGG----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred EEEEeCCCcHHHHHHHHH--HccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 589999998776665444 2222 2378999999999987 888888877654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|++||+||+|+...-. .....++.+|..+|+..+.||++.
T Consensus 115 --------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (180)
T 2g6b_A 115 --------------------------------HDVALMLLGNKVDSAHERV-----VKREDGEKLAKEYGLPFMETSAKT 157 (180)
T ss_dssp --------------------------------TTCEEEEEEECCSTTSCCC-----SCHHHHHHHHHHHTCCEEECCTTT
T ss_pred --------------------------------CCCcEEEEEECcccCcccc-----cCHHHHHHHHHHcCCeEEEEeCCC
Confidence 1479999999999974211 112334667888999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|.+.+..
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 218
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.69 E-value=4.2e-08 Score=97.91 Aligned_cols=114 Identities=12% Similarity=0.159 Sum_probs=85.3
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 73 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~iilV~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 126 (192)
T 2fg5_A 73 KFLIWDTAGQERFHSLAPM--YYRG----SAAAVIVYDITKQDSF-YTLKKWVKELKEHGP------------------- 126 (192)
T ss_dssp EEEEEEECCSGGGGGGTHH--HHTT----CSEEEEEEETTCTHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred EEEEEcCCCchhhHhhhHH--hhcc----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence 3589999998766655544 2222 2378999999999987 888889877654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|++||+||+|+...-+ .-...++.+|..+|+..|.+|++
T Consensus 127 ---------------------------------~~~piiiv~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 127 ---------------------------------ENIVMAIAGNKCDLSDIRE-----VPLKDAKEYAESIGAIVVETSAK 168 (192)
T ss_dssp ---------------------------------TTCEEEEEEECGGGGGGCC-----SCHHHHHHHHHTTTCEEEECBTT
T ss_pred ---------------------------------CCCcEEEEEECcccccccc-----cCHHHHHHHHHHcCCEEEEEeCC
Confidence 1479999999999963211 11234677888999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.+++.|...+..
T Consensus 169 ~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTBSHHHHHHHHHHTCC-
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 219
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.68 E-value=4.8e-08 Score=96.96 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=85.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++++|+|.+.+.++ +.++.|+..++.+..
T Consensus 72 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 125 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTITTA--YYRG----AMGFLLMYDIANQESF-AAVQDWATQIKTYSW------------------- 125 (189)
T ss_dssp EEEEEECCSCCSSCCSGGG--GGTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred EEEEEeCCCcHHHhhhHHH--hccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999998766665544 2222 2378999999999987 888889877655211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|+|||+||+|+...-. .....++.+|..+|+..|.+|++
T Consensus 126 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 167 (189)
T 2gf9_A 126 ---------------------------------DNAQVILVGNKCDLEDERV-----VPAEDGRRLADDLGFEFFEASAK 167 (189)
T ss_dssp ---------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEECBTT
T ss_pred ---------------------------------CCCCEEEEEECcccccccC-----CCHHHHHHHHHHcCCeEEEEECC
Confidence 1378999999999974211 11245677888899999999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++.+|...+.
T Consensus 168 ~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 168 ENINVKQVFERLVDVIC 184 (189)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 220
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.67 E-value=1.4e-08 Score=102.07 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=85.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.++.|+..++....
T Consensus 79 l~i~Dt~G~~~~~~~~~~--~~~~----~d~iilv~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 131 (199)
T 2p5s_A 79 LQLWDTAGQERFRSIAKS--YFRK----ADGVLLLYDVTCEKSF-LNIREWVDMIEDAAH-------------------- 131 (199)
T ss_dssp EEEEECTTCTTCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHC---------------------
T ss_pred EEEEECCCCcchhhhHHH--HHhh----CCEEEEEEECCChHHH-HHHHHHHHHHHHhcC--------------------
Confidence 589999998776665444 2222 2379999999999987 888889876654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-HHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-KKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|+|||+||+|+......+ ........++.+|..+|+..+.||+|
T Consensus 132 --------------------------------~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 179 (199)
T 2p5s_A 132 --------------------------------ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 179 (199)
T ss_dssp ----------------------------------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTT
T ss_pred --------------------------------CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence 137899999999996321111 11223455678888999999999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++.+|...+.
T Consensus 180 ~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 221
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.66 E-value=3.1e-08 Score=98.66 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=85.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.+..|+..++.+..
T Consensus 71 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~l~~i~~~~~------------------- 124 (191)
T 2a5j_A 71 KLQIWDTAGQESFRSITRS--YYRG----AAGALLVYDITRRETF-NHLTSWLEDARQHSS------------------- 124 (191)
T ss_dssp EEEEECCTTGGGTSCCCHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred EEEEEECCCchhhhhhHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999998766655444 2221 2378999999999987 788888877654211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|++||+||+|+...-+ .-...++.+|..+|+..+.||++
T Consensus 125 ---------------------------------~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 125 ---------------------------------SNMVIMLIGNKSDLESRRD-----VKREEGEAFAREHGLIFMETSAK 166 (191)
T ss_dssp ---------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEEECTT
T ss_pred ---------------------------------CCCCEEEEEECcccCCccc-----cCHHHHHHHHHHcCCEEEEEeCC
Confidence 1479999999999964211 11234567888899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...++.
T Consensus 167 ~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999888753
No 222
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.66 E-value=4.7e-08 Score=96.10 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=86.6
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++|+|+|.+.|.++ +.+..|+..+..+...
T Consensus 71 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------ 125 (195)
T 3bc1_A 71 HLQLWDTAGLERFRSLTTA--FFRD----AMGFLLLFDLTNEQSF-LNVRNWISQLQMHAYS------------------ 125 (195)
T ss_dssp EEEEEEECCSGGGHHHHHH--TTTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSSS------------------
T ss_pred EEEEEeCCCcHHHHHHHHH--HHcC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC------------------
Confidence 4689999999776665444 2222 2378999999999987 7788888776653210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|+|||+||+|+...-. .....++.+|..+|+..+.+|++
T Consensus 126 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 126 ---------------------------------ENPDIVLCGNKSDLEDQRA-----VKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp ---------------------------------SSCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCCEEECCTT
T ss_pred ---------------------------------CCCCEEEEEECcccccccc-----cCHHHHHHHHHHcCCCEEEEECC
Confidence 1479999999999964211 11344677888899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...+..
T Consensus 168 ~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 223
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.65 E-value=1.2e-07 Score=94.08 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=86.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 66 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 119 (196)
T 3tkl_A 66 KLQIWDTAGQERFRTITSS--YYRG----AHGIIVVYDVTDQESF-NNVKQWLQEIDRYAS------------------- 119 (196)
T ss_dssp EEEEEEECCSGGGCTTHHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred EEEEEECCCcHhhhhhHHH--HHhh----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3689999998766655544 2222 2379999999999987 888889887754211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|+|||+||+|+...-.. -...++.+|..+|+..+.+|++
T Consensus 120 ---------------------------------~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~ 161 (196)
T 3tkl_A 120 ---------------------------------ENVNKLLVGNKCDLTTKKVV-----DYTTAKEFADSLGIPFLETSAK 161 (196)
T ss_dssp ---------------------------------TTCEEEEEEECTTCTTTCCS-----CHHHHHHHHHHTTCCEEEECTT
T ss_pred ---------------------------------CCCCEEEEEECccccccccc-----CHHHHHHHHHHcCCcEEEEeCC
Confidence 14789999999998743111 1234678899999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...+..
T Consensus 162 ~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988875
No 224
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.65 E-value=5.9e-08 Score=95.43 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=85.8
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|.+.|.++ +.+..|+..++.+..
T Consensus 60 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 113 (186)
T 2bme_A 60 KLQIWDTAGQERFRSVTRS--YYRG----AAGALLVYDITSRETY-NALTNWLTDARMLAS------------------- 113 (186)
T ss_dssp EEEEEEECCSGGGHHHHHT--TSTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred EEEEEeCCCcHHHHHHHHH--HHhc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999998776665444 2222 2379999999999987 888888877654211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|++||+||+|+...-+- -...++.+|..+|...+.||++
T Consensus 114 ---------------------------------~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~ 155 (186)
T 2bme_A 114 ---------------------------------QNIVIILCGNKKDLDADREV-----TFLEASRFAQENELMFLETSAL 155 (186)
T ss_dssp ---------------------------------TTCEEEEEEECGGGGGGCCS-----CHHHHHHHHHHTTCEEEECCTT
T ss_pred ---------------------------------CCCcEEEEEECccccccccc-----CHHHHHHHHHHcCCEEEEecCC
Confidence 14799999999999632111 1234567888999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...++.
T Consensus 156 ~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 156 TGENVEEAFVQCARKILN 173 (186)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988874
No 225
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.64 E-value=5.9e-08 Score=95.32 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=85.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+.. .-++++|+|++.+.++ +.++.|+..+..+...
T Consensus 68 l~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 121 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQ--YMRT----GDGFLIVYSVTDKASF-EHVDRFHQLILRVKDR------------------- 121 (183)
T ss_dssp EEEEECCSCGGGCSSHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTS-------------------
T ss_pred EEEEECCCchhhHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 578999998766665554 2222 2378999999999987 8888998877653321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC-
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL- 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K- 551 (890)
.++|+|||+||+|+...-. .-...++.+|..+|+..+.||++
T Consensus 122 --------------------------------~~~p~ilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~ 164 (183)
T 3kkq_A 122 --------------------------------ESFPMILVANKVDLMHLRK-----VTRDQGKEMATKYNIPYIETSAKD 164 (183)
T ss_dssp --------------------------------SCCCEEEEEECTTCSTTCC-----SCHHHHHHHHHHHTCCEEEEBCSS
T ss_pred --------------------------------CCCcEEEEEECCCchhccC-----cCHHHHHHHHHHhCCeEEEeccCC
Confidence 1479999999999874211 11234678888999999999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++..|...+.
T Consensus 165 ~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SCBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987753
No 226
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.64 E-value=3.4e-08 Score=95.15 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=83.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+. ..-++++|+|++.+.++ +.++.|+..++.+..
T Consensus 54 ~~l~D~~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 106 (170)
T 1g16_A 54 LQIWDTAGQERFRTITTA--YYR----GAMGIILVYDITDERTF-TNIKQWFKTVNEHAN-------------------- 106 (170)
T ss_dssp EEEECCTTGGGTSCCCHH--HHT----TEEEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred EEEEeCCCChhhhhhHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 589999998665554443 122 23379999999999987 888889877765321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|++||+||+|+...- .....++.+|..+|+..+.+|++.
T Consensus 107 --------------------------------~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (170)
T 1g16_A 107 --------------------------------DEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKN 148 (170)
T ss_dssp --------------------------------TTCEEEEEEECTTCTTCC------SCHHHHHHHHHHHTCCEEECBTTT
T ss_pred --------------------------------CCCcEEEEEECccCCcCc------cCHHHHHHHHHHcCCeEEEEECCC
Confidence 147899999999994211 112345677888899999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.++..|...+.
T Consensus 149 ~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998775
No 227
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.63 E-value=2.1e-07 Score=92.43 Aligned_cols=124 Identities=13% Similarity=0.073 Sum_probs=88.1
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.+..|+..+..+..- .
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~~~-----~------------ 119 (199)
T 4bas_A 64 AFTVFDMGGAKKFRGLWET--YYDN----IDAVIFVVDSSDHLRL-CVVKSEIQAMLKHEDI-----R------------ 119 (199)
T ss_dssp EEEEEEECCSGGGGGGGGG--GCTT----CSEEEEEEETTCGGGH-HHHHHHHHHHHTSHHH-----H------------
T ss_pred EEEEEECCCCHhHHHHHHH--HHhc----CCEEEEEEECCcHHHH-HHHHHHHHHHHhChhh-----h------------
Confidence 4589999999777766655 2332 2379999999999987 7777887766543221 0
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHH--HHHHHHHcCCceeEec
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQC--LRYLAHVNGASLLFHS 549 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~--lR~fcl~yGAsL~ftS 549 (890)
+.. ....++|+|||+||+|+....+.++ +.+. +..+|...++..|.||
T Consensus 120 --------~~~-------------------~~~~~~piilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~S 169 (199)
T 4bas_A 120 --------REL-------------------PGGGRVPFLFFANKMDAAGAKTAAE---LVEILDLTTLMGDHPFVIFASN 169 (199)
T ss_dssp --------SBC-------------------TTSCBCCEEEEEECTTSTTCCCHHH---HHHHHTHHHHHTTSCEEEEECB
T ss_pred --------hcc-------------------cccCCCCEEEEEECcCCCCCCCHHH---HHHHhcchhhccCCeeEEEEee
Confidence 000 0112589999999999986544332 2222 4455567899999999
Q ss_pred cCChhhHHHHHHHHhhhhcC
Q psy11649 550 SLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~fg 569 (890)
++.+.|++.++.+|...+..
T Consensus 170 a~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 228
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.63 E-value=1.8e-07 Score=90.89 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=84.9
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++++|+|++.|.++ +.+..|+..++.+..
T Consensus 64 ~~~~~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 117 (179)
T 2y8e_A 64 RLQLWDTAGQERFRSLIPS--YIRD----STVAVVVYDITNTNSF-HQTSKWIDDVRTERG------------------- 117 (179)
T ss_dssp EEEEEEECCSGGGGGGSHH--HHHT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT-------------------
T ss_pred EEEEEECCCcHHHHHHHHH--HhcC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3689999998766665554 2221 2379999999999987 888888877765321
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|++||+||+|+...-+ .-....+.+|..+|+..+.+|++
T Consensus 118 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 118 ---------------------------------SDVIIMLVGNKTDLSDKRQ-----VSTEEGERKAKELNVMFIETSAK 159 (179)
T ss_dssp ---------------------------------TSSEEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTCEEEEEBTT
T ss_pred ---------------------------------CCCcEEEEEECCcccccCc-----CCHHHHHHHHHHcCCeEEEEeCC
Confidence 1378999999999974211 11233566778889999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++.+|...+..
T Consensus 160 ~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTBSHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987754
No 229
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.63 E-value=8.5e-08 Score=108.11 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=114.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccc--------------cceEEEEEEcCCCcchh
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTV--------------MKDICHLWELGSGTSRL 97 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~--------------~k~~l~IwDlpG~~~~~ 97 (890)
...+|+|+|.+|||||||+|+|++... ...|+.+++........... ....+++|||||..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 457899999999999999999998532 22344454443333321100 01259999999987654
Q ss_pred h----HHhhhhccccccccCcEEEEEEeCCCcCchH---------HHHHHHHHHH--------HHHHhhhhh---hh-hh
Q psy11649 98 E----VASLFSSFSLTAQSGFTLVLMLDLSRLNSLW---------TEAETFLAKF--------RAIFESNES---VR-EK 152 (890)
Q Consensus 98 ~----Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~---------~~L~~wlq~I--------~e~~~~ll~---~~-~~ 152 (890)
+ +...+ ...++ ++|++++|+|+++..++. +.+.....++ ...+..+.. .. ..
T Consensus 101 s~~~glg~~~-l~~ir--~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g~~ 177 (396)
T 2ohf_A 101 HNGQGLGNAF-LSHIS--ACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDK 177 (396)
T ss_dssp ------CCHH-HHHHH--TSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC------
T ss_pred chhhHHHHHH-HHHHH--hcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhcccch
Confidence 3 21112 00122 499999999998755431 1121111111 111111000 00 00
Q ss_pred c------------cccccc-c-c--cccc-c-cc----ccccCCCCcEEEEeeccc--CCCCCCcchhhhhHHHHHHHHH
Q psy11649 153 R------------GSFEHF-R-T--ADEH-R-DK----GLIRTFPVPLILIGGKYD--LFENLEPNKKRIAVQCLRYLAH 208 (890)
Q Consensus 153 ~------------~~l~~~-~-~--~~~~-~-d~----~li~~l~IPiIVVgNK~D--l~~d~d~e~r~~i~~~lr~la~ 208 (890)
. ..+.+. . . ..+. . +. .+......|++.++|+.+ ... ...-....+++++.
T Consensus 178 ~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~-----~~n~~~~~v~~~~~ 252 (396)
T 2ohf_A 178 KLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR-----KKNKWLIKIKEWVD 252 (396)
T ss_dssp --CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHH-----TCCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhcc-----cccHHHHHHHHHHH
Confidence 0 001111 0 0 0000 0 00 111224589999999984 210 00112334666665
Q ss_pred H--cCCeEEEEeccCC---------------------CCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCcccccc
Q psy11649 209 V--NGASLLFHSSLDP---------------------GLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI 265 (890)
Q Consensus 209 ~--~Ga~l~etSAK~~---------------------~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I 265 (890)
. .|+.++.+||+.. .+++++.....+++- ... +-+.|.|..
T Consensus 253 ~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~-----------li~--~fT~g~~ev--- 316 (396)
T 2ohf_A 253 KYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQ-----------LEY--FFTAGPDEV--- 316 (396)
T ss_dssp HHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTT-----------EEE--EEEESSSEE---
T ss_pred hhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhC-----------CEE--EECCCCCcc---
Confidence 5 3688999999853 345555555544431 000 112333332
Q ss_pred ccCC-CCCCCCccccccccccccchhHHHhhcc
Q psy11649 266 EGTT-HGKDASLESGGRGFNRSRGMKFEKKRGW 297 (890)
Q Consensus 266 ~~pl-~r~~~~~~~~~~~~~~~~~~~f~~~~~w 297 (890)
. +. ++++++..+.+..+|.++...|.++.+|
T Consensus 317 r-awti~~g~ta~~aAg~IH~D~~~gFi~Aev~ 348 (396)
T 2ohf_A 317 R-AWTIRKGTKAPQAAGKIHTDFEKGFIMAEVM 348 (396)
T ss_dssp E-EEEEETTCBHHHHHHTTCTHHHHHEEEEEEE
T ss_pred e-eEEecCCCcHHHHHhhhHHHHHhcceEEEEc
Confidence 1 22 5678888899999999999999999988
No 230
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.63 E-value=7.1e-08 Score=97.97 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=85.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.++.|+..++.+..
T Consensus 77 l~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~-------------------- 129 (201)
T 2ew1_A 77 LQIWDTAGQERFRSITQS--YYRS----ANALILTYDITCEESF-RCLPEWLREIEQYAS-------------------- 129 (201)
T ss_dssp EEEEEECCSGGGHHHHGG--GSTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred EEEEECCCcHHHHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 589999999766655444 2322 2379999999999987 888899877654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+||||||+|+...-+ .-.+.++.+|..+|...|.||++.
T Consensus 130 --------------------------------~~~piilv~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~ 172 (201)
T 2ew1_A 130 --------------------------------NKVITVLVGNKIDLAERRE-----VSQQRAEEFSEAQDMYYLETSAKE 172 (201)
T ss_dssp --------------------------------TTCEEEEEEECGGGGGGCS-----SCHHHHHHHHHHHTCCEEECCTTT
T ss_pred --------------------------------CCCCEEEEEECCCCccccc-----cCHHHHHHHHHHcCCEEEEEeCCC
Confidence 1478999999999963211 112345677888999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|...++.
T Consensus 173 g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 173 SDNVEKLFLDLACRLIS 189 (201)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988864
No 231
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.63 E-value=1.4e-07 Score=90.70 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=75.8
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++++|+|++.|.++ +.++.|+..+..+..
T Consensus 50 ~~~i~D~~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 103 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGH--CMAM----GDAYVIVYSVTDKGSF-EKASELRVQLRRARQ------------------- 103 (166)
T ss_dssp EEEEEECC---------------------CCEEEEEEETTCHHHH-HHHHHHHHHHHHCC--------------------
T ss_pred EEEEEECCCCccchhhhhh--hhhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3479999998776655554 2221 2378999999999987 888888876654211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
..++|+|||+||+|+...-+ .-....+.+|..+|+..+.||++
T Consensus 104 --------------------------------~~~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 146 (166)
T 3q72_A 104 --------------------------------TDDVPIILVGNKSDLVRSRE-----VSVDEGRACAVVFDCKFIETSAA 146 (166)
T ss_dssp ----------------------------------CCCEEEEEECTTCCSSCC-----SCHHHHHHHHHHTTCEEEECBGG
T ss_pred --------------------------------CCCCCEEEEEeccccccccc-----cCHHHHHHHHHHhCCcEEEeccC
Confidence 01479999999999974321 11233577889999999999999
Q ss_pred ChhhHHHHHHHHhhhh
Q psy11649 552 DPGLVKRTRDILNHYA 567 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~ 567 (890)
.+.|++.++..|...+
T Consensus 147 ~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 147 LHHNVQALFEGVVRQI 162 (166)
T ss_dssp GTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 232
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.63 E-value=2.1e-07 Score=93.55 Aligned_cols=116 Identities=19% Similarity=0.148 Sum_probs=86.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.+..|+..+..+...
T Consensus 74 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 127 (201)
T 3oes_A 74 LHLVDTAGQDEYSILPYS--FIIG----VHGYVLVYSVTSLHSF-QVIESLYQKLHEGHGK------------------- 127 (201)
T ss_dssp EEEEEECCCCTTCCCCGG--GTTT----CCEEEEEEETTCHHHH-HHHHHHHHHHHC-----------------------
T ss_pred EEEEECCCccchHHHHHH--HHhc----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 589999998766665544 2222 2379999999999987 8888888776653221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...-+ .-...++.+|..+|+..|.+|++.
T Consensus 128 --------------------------------~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~ 170 (201)
T 3oes_A 128 --------------------------------TRVPVVLVGNKADLSPERE-----VQAVEGKKLAESWGATFMESSARE 170 (201)
T ss_dssp ---------------------------------CCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEECCTTC
T ss_pred --------------------------------CCCCEEEEEECccCccccc-----cCHHHHHHHHHHhCCeEEEEeCCC
Confidence 1489999999999874211 112345788899999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCC
Q psy11649 553 PGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~ 571 (890)
+.|++.++..|...+....
T Consensus 171 ~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 171 NQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9999999999999887643
No 233
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.62 E-value=1.4e-07 Score=92.17 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=87.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++++|+|++.|.++ +.++.|+..+..+...
T Consensus 67 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------ 121 (187)
T 2a9k_A 67 QIDILDTAGQEDYAAIRDN--YFRS----GEGFLCVFSITEMESF-AATADFREQILRVKED------------------ 121 (187)
T ss_dssp EEEEEECCCTTCCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCC------------------
T ss_pred EEEEEECCCCcccHHHHHH--Hhcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC------------------
Confidence 3579999998766665554 2222 2278999999999987 8888888877664331
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|++||+||+|+...-+ .-...++.+|..+|+..|.+|++
T Consensus 122 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 163 (187)
T 2a9k_A 122 ---------------------------------ENVPFLLVGNKSDLEDKRQ-----VSVEEAKNRAEQWNVNYVETSAK 163 (187)
T ss_dssp ---------------------------------TTCCEEEEEECGGGGGGCC-----SCHHHHHHHHHHTTCEEEECCTT
T ss_pred ---------------------------------CCCCEEEEEECccccccCc-----cCHHHHHHHHHHcCCeEEEeCCC
Confidence 1379999999999974211 11345677888999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++.+|...+..
T Consensus 164 ~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 164 TRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 234
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.62 E-value=9.4e-08 Score=92.04 Aligned_cols=112 Identities=11% Similarity=0.118 Sum_probs=84.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+.+|+..|...+..+... .+.. .-++++|+|++.|.++ +.++.|+..++.+..
T Consensus 57 ~~~~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~-------------------- 109 (170)
T 1z0j_A 57 FLIWDTAGLERFRALAPM--YYRG----SAAAIIVYDITKEETF-STLKNWVRELRQHGP-------------------- 109 (170)
T ss_dssp EEEEEECCSGGGGGGTHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred EEEEcCCCchhhhcccHh--hCcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence 579999998666655444 2222 2378999999999987 888889887765210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-.+|++||+||+|+...-+ .....++.+|..+|+..+.+|++.
T Consensus 110 --------------------------------~~~~iilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1z0j_A 110 --------------------------------PSIVVAIAGNKCDLTDVRE-----VMERDAKDYADSIHAIFVETSAKN 152 (170)
T ss_dssp --------------------------------TTSEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECBTTT
T ss_pred --------------------------------CCCcEEEEEECCccccccc-----cCHHHHHHHHHHcCCEEEEEeCCC
Confidence 0378999999999974211 123346678888999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.++..|..++.
T Consensus 153 ~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 153 AININELFIEISRRIP 168 (170)
T ss_dssp TBSHHHHHHHHHHHCC
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999988764
No 235
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.62 E-value=1.7e-08 Score=100.56 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=86.0
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 74 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 126 (191)
T 3dz8_A 74 LQIWDTAGQERYRTITTA--YYRG----AMGFILMYDITNEESF-NAVQDWATQIKTYSW-------------------- 126 (191)
T ss_dssp EEEECHHHHHHCHHHHHH--HHTT----CCEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred EEEEeCCChHHHHHHHHH--HHcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 689999998666655544 2222 2379999999999988 888999888765211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|+|||+||+|+...- ......++.+|..+|+..|.||+|.
T Consensus 127 --------------------------------~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (191)
T 3dz8_A 127 --------------------------------DNAQVILVGNKCDMEEER-----VVPTEKGQLLAEQLGFDFFEASAKE 169 (191)
T ss_dssp --------------------------------TTCEEEEEEECTTCGGGC-----CSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred --------------------------------CCCCEEEEEECCCCcccc-----ccCHHHHHHHHHHcCCeEEEEECCC
Confidence 147999999999986321 1223456778899999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|...++.
T Consensus 170 ~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 170 NISVRQAFERLVDAICD 186 (191)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887753
No 236
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.61 E-value=1.3e-07 Score=94.26 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=83.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+..+ +.. .-++++|+|++.+.++ +.+..|+..++.+....
T Consensus 71 l~i~Dt~G~~~~~~~~~~---~~~----~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~------------------ 124 (187)
T 3c5c_A 71 LRVMDTADLDTPRNCERY---LNW----AHAFLVVYSVDSRQSF-DSSSSYLELLALHAKET------------------ 124 (187)
T ss_dssp EEEEECCC---CCCTHHH---HTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHHHH------------------
T ss_pred EEEEECCCCCcchhHHHH---Hhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhhcc------------------
Confidence 579999998766554333 221 2378999999999987 88999999888765420
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc-C
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS-L 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~-K 551 (890)
.-++|+||||||+|+...-. .-...++.+|..+|+..+.||+ +
T Consensus 125 -------------------------------~~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~ 168 (187)
T 3c5c_A 125 -------------------------------QRSIPALLLGNKLDMAQYRQ-----VTKAEGVALAGRFGCLFFEVSACL 168 (187)
T ss_dssp -------------------------------CCCCCEEEEEECGGGGGGCS-----SCHHHHHHHHHHHTCEEEECCSSS
T ss_pred -------------------------------CCCCCEEEEEECcchhhcCc-----cCHHHHHHHHHHcCCcEEEEeecC
Confidence 01479999999999963211 1234467788889999999999 8
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++..|...+.
T Consensus 169 ~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999999987653
No 237
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.60 E-value=1e-07 Score=91.18 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=83.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-.+++|+|++.+.++ +.+..|+..+.++...
T Consensus 53 ~~l~D~~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 106 (167)
T 1kao_A 53 LEILDTAGTEQFASMRDL--YIKN----GQGFILVYSLVNQQSF-QDIKPMRDQIIRVKRY------------------- 106 (167)
T ss_dssp EEEEECCCTTCCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHTTT-------------------
T ss_pred EEEEECCCchhhHHHHHH--Hhcc----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 689999998776665544 2222 2378999999999987 7888887766543221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|++||+||+|+...-+ .....++.+|..+|+..+.+|++.
T Consensus 107 --------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 149 (167)
T 1kao_A 107 --------------------------------EKVPVILVGNKVDLESERE-----VSSSEGRALAEEWGCPFMETSAKS 149 (167)
T ss_dssp --------------------------------SCCCEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTSCEEEECTTC
T ss_pred --------------------------------CCCCEEEEEECCccccccc-----CCHHHHHHHHHHhCCCEEEecCCC
Confidence 1479999999999864211 123345678888899999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++.+|...+
T Consensus 150 ~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 150 KTMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998765
No 238
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.60 E-value=2.4e-07 Score=93.20 Aligned_cols=114 Identities=16% Similarity=0.217 Sum_probs=86.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++|+|+|.+.|.++ +.++.|+..++.+..
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 111 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTITSS--YYRG----SHGIIIVYDVTDQESF-NGVKMWLQEIDRYAT------------------- 111 (206)
T ss_dssp EEEEECCTTTTTTTCCCGG--GGTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred EEEEEeCCChHHHHHHHHH--hccC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999998776665554 2322 2379999999999987 888888877654211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|++||+||+|+...-. .-...++.+|..+|+..|++|++
T Consensus 112 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 153 (206)
T 2bcg_Y 112 ---------------------------------STVLKLLVGNKCDLKDKRV-----VEYDVAKEFADANKMPFLETSAL 153 (206)
T ss_dssp ---------------------------------TTCEEEEEEECTTCTTTCC-----SCHHHHHHHHHHTTCCEEECCTT
T ss_pred ---------------------------------CCCCEEEEEECCCCccccc-----cCHHHHHHHHHHcCCeEEEEeCC
Confidence 1378999999999974211 11234566788899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...+..
T Consensus 154 ~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998875
No 239
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.60 E-value=1e-07 Score=96.24 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=85.6
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.+..|+..++.+..
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~--~~~~----~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~------------------- 132 (201)
T 2hup_A 79 KLQIWDTAGQERFRTITQS--YYRS----ANGAILAYDITKRSSF-LSVPHWIEDVRKYAG------------------- 132 (201)
T ss_dssp EEEEECCTTCGGGHHHHHH--HHTT----CSEEEEEEETTBHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred EEEEEECCCcHhHHHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999999766665544 2222 2379999999999987 888899877655211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~ 550 (890)
.++|+|||+||+|+...-. .-...++.+|..+|+ ..|.||+
T Consensus 133 ---------------------------------~~~piilv~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 133 ---------------------------------SNIVQLLIGNKSDLSELRE-----VSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp ---------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCSEEEECBT
T ss_pred ---------------------------------CCCCEEEEEECCccccccc-----cCHHHHHHHHHHcCCCEEEEEeC
Confidence 1479999999999974211 112345678888999 9999999
Q ss_pred CChhhHHHHHHHHhhhhcC
Q psy11649 551 LDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~fg 569 (890)
|.+.|++.++..|...+..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 240
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.60 E-value=4e-07 Score=106.94 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=71.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC------------------------CCCCCccceeEEEEEEeccccceEEEEEE
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND------------------------TPKPTLALEYIYARKSGKTVMKDICHLWE 89 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------------------------~~kptigvdY~f~~~~g~~~~k~~l~IwD 89 (890)
+-.+|+|||-.++|||||..+|+...+ ...-++++.-..... ...+.+++|+|
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~---~~~~~~iNlID 106 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF---PYRDRVVNLLD 106 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE---EETTEEEEEEC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE---EECCEEEEEEe
Confidence 457899999999999999999963110 001111111111111 11234899999
Q ss_pred cCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649 90 LGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK 168 (890)
Q Consensus 90 lpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~ 168 (890)
|||...|..-+... +- +|++|+|+|...--.- .....|.+ +.+
T Consensus 107 TPGHvDF~~Ev~raL~~-------~DgAvlVvda~~GV~~-qT~~v~~~-a~~--------------------------- 150 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTA-------VDSALVVIDAAKGVEA-QTRKLMDV-CRM--------------------------- 150 (548)
T ss_dssp CCCGGGCSHHHHHHHHS-------CSEEEEEEETTTBSCH-HHHHHHHH-HHH---------------------------
T ss_pred CCCcHHHHHHHHHHHHh-------cCceEEEeecCCCccc-ccHHHHHH-HHH---------------------------
Confidence 99998885544444 43 8999999999985553 34444543 211
Q ss_pred ccccCCCCcEEEEeecccCC
Q psy11649 169 GLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 169 ~li~~l~IPiIVVgNK~Dl~ 188 (890)
.++|+++++||+|..
T Consensus 151 -----~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 151 -----RATPVMTFVNKMDRE 165 (548)
T ss_dssp -----TTCCEEEEEECTTSC
T ss_pred -----hCCceEEEEecccch
Confidence 279999999999974
No 241
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.59 E-value=6.6e-08 Score=96.10 Aligned_cols=113 Identities=20% Similarity=0.299 Sum_probs=83.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++|+|+|++.|.++ +.+..|+..+..+.
T Consensus 76 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~vi~v~D~~~~~s~-~~~~~~l~~i~~~~--------------------- 127 (193)
T 2oil_A 76 AQIWDTAGLERYRAITSA--YYRG----AVGALLVFDLTKHQTY-AVVERWLKELYDHA--------------------- 127 (193)
T ss_dssp EEEEEESCCCTTCTTHHH--HHTT----CCEEEEEEETTCHHHH-HTHHHHHHHHHTTS---------------------
T ss_pred EEEEeCCCchhhhhhhHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhc---------------------
Confidence 579999998766655544 2222 2378999999999987 77788876654310
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
..++|+|||+||+|+...-+ .-...++.+|..+|+..|.||++.
T Consensus 128 -------------------------------~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (193)
T 2oil_A 128 -------------------------------EATIVVMLVGNKSDLSQARE-----VPTEEARMFAENNGLLFLETSALD 171 (193)
T ss_dssp -------------------------------CTTCEEEEEEECGGGGGGCC-----SCHHHHHHHHHHTTCEEEEECTTT
T ss_pred -------------------------------CCCCeEEEEEECCCcccccc-----cCHHHHHHHHHHcCCEEEEEeCCC
Confidence 01479999999999974211 112346778889999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|...++.
T Consensus 172 ~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 172 STNVELAFETVLKEIFA 188 (193)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887753
No 242
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.59 E-value=1.1e-07 Score=94.58 Aligned_cols=117 Identities=19% Similarity=0.234 Sum_probs=85.3
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
...+|+..|...+..+... .+.. .-++|+|+|++.|.++ +.++ .|+..++++..
T Consensus 67 ~~~i~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------ 121 (194)
T 2atx_A 67 LLGLYDTAGQEDYDRLRPL--SYPM----TDVFLICFSVVNPASF-QNVKEEWVPELKEYAP------------------ 121 (194)
T ss_dssp EEEEECCCCSSSSTTTGGG--GCTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHST------------------
T ss_pred EEEEEECCCCcchhHHHHH--hcCC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------
Confidence 3589999998776665554 2222 2378999999999988 5554 88877665210
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA 543 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA 543 (890)
++|+|||+||+|+....+... ...-...++.+|..+|+
T Consensus 122 -----------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 166 (194)
T 2atx_A 122 -----------------------------------NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 166 (194)
T ss_dssp -----------------------------------TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred -----------------------------------CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence 378999999999975311000 01123567788999998
Q ss_pred -ceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 544 -SLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 544 -sL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
..|.||+|.+.|++.++..|...++
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988765
No 243
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.59 E-value=7.6e-08 Score=96.45 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=85.3
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.+..|+..+..+..
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 111 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTA--YYRG----AMGFILMYDITNEESF-NAVQDWSTQIKTYSW------------------- 111 (203)
T ss_dssp EEEEEEECCSGGGHHHHHT--TGGG----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred EEEEEECCCchhhcchHHH--hhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 3589999998766655444 2221 2379999999999887 888888877654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
-++|+|||+||+|+...-. .-...++.+|..+|+..|.+|++
T Consensus 112 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
T 1zbd_A 112 ---------------------------------DNAQVLLVGNKCDMEDERV-----VSSERGRQLADHLGFEFFEASAK 153 (203)
T ss_dssp ---------------------------------SSCEEEEEEECTTCTTSCC-----SCHHHHHHHHHHHTCEEEECBTT
T ss_pred ---------------------------------CCCCEEEEEECcccCcccc-----cCHHHHHHHHHHCCCeEEEEECC
Confidence 1378999999999964211 11234667888899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++.+|...+..
T Consensus 154 ~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999888764
No 244
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.9e-07 Score=95.64 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=84.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. ..++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 63 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~vilV~D~~~~~s~-~~~~~~l~~i~~~~~------------------- 116 (223)
T 3cpj_B 63 KAQIWDTAGQERYRAITSA--YYRG----AVGALIVYDISKSSSY-ENCNHWLSELRENAD------------------- 116 (223)
T ss_dssp EEEEECCTTTTTTTCCCGG--GTTT----CCEEEEEEC-CCHHHH-HHHHHHHHHHHHHCC-------------------
T ss_pred EEEEEECCCccchhhhHHH--Hhcc----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence 3589999998776665554 2222 2378999999999987 888889887755211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|+|||+||+|+...-+- -...++.+|..+|+..+.+|++
T Consensus 117 ---------------------------------~~~piilv~nK~Dl~~~~~v-----~~~~~~~~~~~~~~~~~~~Sa~ 158 (223)
T 3cpj_B 117 ---------------------------------DNVAVGLIGNKSDLAHLRAV-----PTEESKTFAQENQLLFTETSAL 158 (223)
T ss_dssp -----------------------------------CEEEEEECCGGGGGGCCS-----CHHHHHHHHHHTTCEEEECCCC
T ss_pred ---------------------------------CCCeEEEEEECccccccccc-----CHHHHHHHHHHcCCEEEEEeCC
Confidence 14799999999999742111 1223567788899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...++.
T Consensus 159 ~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 159 NSENVDKAFEELINTIYQ 176 (223)
T ss_dssp -CCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999999986
No 245
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.58 E-value=1.6e-07 Score=90.14 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=84.6
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+. ..-++++|+|.+.|.++ +.+..|+..+..+..
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 108 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKA--YYR----GAQACVLVFSTTDRESF-EAISSWREKVVAEVG------------------- 108 (168)
T ss_dssp EEEEECCTTGGGTTCCCHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHHC-------------------
T ss_pred EEEEEcCCCcHhHHHHHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence 3589999998666655444 222 12378999999999987 888888877765321
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
++|++||+||+|+...-+ .-...++.+|..+|+..+.+|++
T Consensus 109 ----------------------------------~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1z2a_A 109 ----------------------------------DIPTALVQNKIDLLDDSC-----IKNEEAEGLAKRLKLRFYRTSVK 149 (168)
T ss_dssp ----------------------------------SCCEEEEEECGGGGGGCS-----SCHHHHHHHHHHHTCEEEECBTT
T ss_pred ----------------------------------CCCEEEEEECcccCcccc-----cCHHHHHHHHHHcCCeEEEEecC
Confidence 278999999999974211 11234567888899999999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++++|...++
T Consensus 150 ~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp TTBSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988775
No 246
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.57 E-value=2.4e-07 Score=88.61 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=82.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++++|+|++.|.++ +.+..|+..+..+...
T Consensus 54 ~~l~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 107 (168)
T 1u8z_A 54 IDILDTAGQEDYAAIRDN--YFRS----GEGFLCVFSITEMESF-AATADFREQILRVKED------------------- 107 (168)
T ss_dssp EEEEECCC---CHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCC-------------------
T ss_pred EEEEECCCcchhHHHHHH--Hhhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 579999998766655444 2221 2378999999999987 8888898877654321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|++||+||+|+...-+ .-...++.+|..+|+..+.+|++.
T Consensus 108 --------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T 1u8z_A 108 --------------------------------ENVPFLLVGNKSDLEDKRQ-----VSVEEAKNRADQWNVNYVETSAKT 150 (168)
T ss_dssp --------------------------------TTSCEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTCEEEECCTTT
T ss_pred --------------------------------CCCcEEEEEECccccccCc-----cCHHHHHHHHHHcCCeEEEeCCCC
Confidence 1479999999999974322 112345667788899999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.++.+|...+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 151 RANVDKVFFDLMREIR 166 (168)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987764
No 247
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.57 E-value=3.4e-07 Score=88.96 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=85.4
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
...+|+..|...+..+... .+.. .-++++|+|++.+.++ +.+..|+..+..+...
T Consensus 58 ~~~~~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------ 112 (181)
T 2fn4_A 58 RLDILDTAGQEEFGAMREQ--YMRA----GHGFLLVFAINDRQSF-NEVGKLFTQILRVKDR------------------ 112 (181)
T ss_dssp EEEEEECCCTTTTSCCHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHTS------------------
T ss_pred EEEEEECCCchhhHHHHHH--HHhh----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC------------------
Confidence 3579999998766665554 2222 2378999999999987 7888888766443221
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|++||+||+|+...-+- -...++.+|..+|+..+.+|++
T Consensus 113 ---------------------------------~~~piilv~nK~Dl~~~~~v-----~~~~~~~~~~~~~~~~~~~Sa~ 154 (181)
T 2fn4_A 113 ---------------------------------DDFPVVLVGNKADLESQRQV-----PRSEASAFGASHHVAYFEASAK 154 (181)
T ss_dssp ---------------------------------SCCCEEEEEECGGGGGGCCS-----CHHHHHHHHHHTTCEEEECBTT
T ss_pred ---------------------------------CCCCEEEEEECccccccccc-----CHHHHHHHHHHcCCeEEEecCC
Confidence 14799999999999742111 1233567888899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++++|...+..
T Consensus 155 ~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 248
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.56 E-value=7.6e-08 Score=96.18 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=77.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|.+.|.++ +.+..|+..+..+...
T Consensus 74 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------ 128 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKEQISQ--YWNG----VYYAILVFDVSSMESF-ESCKAWFELLKSARPD------------------ 128 (208)
T ss_dssp EEEEEETTTTHHHHHHHST--TCCC----CCEEEEEEETTCHHHH-HHHHHHHHHHHHHCSC------------------
T ss_pred EEEEEECCCcHHHHHHHHH--HHhh----CcEEEEEEECCCHHHH-HHHHHHHHHHHHhhcc------------------
Confidence 3589999999666555444 2221 2379999999999987 8888998877663220
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
...++|+|||+||+|+... ....-...++.+|..+|+..+.||++
T Consensus 129 -------------------------------~~~~~piilv~nK~Dl~~~----~~~v~~~~~~~~~~~~~~~~~~~Sa~ 173 (208)
T 2yc2_C 129 -------------------------------RERPLRAVLVANKTDLPPQ----RHQVRLDMAQDWATTNTLDFFDVSAN 173 (208)
T ss_dssp -------------------------------TTSCCEEEEEEECC-----------CCCHHHHHHHHHHTTCEEEECCC-
T ss_pred -------------------------------cccCCcEEEEEECcccchh----hccCCHHHHHHHHHHcCCEEEEeccC
Confidence 0124899999999999741 01111345677888999999999999
Q ss_pred C-hhhHHHHHHHHhhhhcC
Q psy11649 552 D-PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~-~~n~~~l~kyi~hr~fg 569 (890)
. +.|++.++..|...+..
T Consensus 174 ~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp ------CHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9 99999999999887753
No 249
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.56 E-value=7e-08 Score=97.21 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=84.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.+..|+..++.+..
T Consensus 75 ~l~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 128 (200)
T 2o52_A 75 KLQIWDTAGQERFRSVTRS--YYRG----AAGALLVYDITSRETY-NSLAAWLTDARTLAS------------------- 128 (200)
T ss_dssp EEEEECCTTHHHHSCCCHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHTC-------------------
T ss_pred EEEEEcCCCcHhHHHHHHH--Hhcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 4589999998655554443 2221 2378999999999987 888888877655211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|+|||+||+|+...-.-. ...++.+|..+|+..|.||++
T Consensus 129 ---------------------------------~~~piilv~nK~Dl~~~~~v~-----~~~~~~~~~~~~~~~~~~SA~ 170 (200)
T 2o52_A 129 ---------------------------------PNIVVILCGNKKDLDPEREVT-----FLEASRFAQENELMFLETSAL 170 (200)
T ss_dssp ---------------------------------TTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHHTTCEEEEECTT
T ss_pred ---------------------------------CCCcEEEEEECCCcccccccC-----HHHHHHHHHHcCCEEEEEeCC
Confidence 147999999999996321111 233567888999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...++.
T Consensus 171 ~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 171 TGENVEEAFLKCARTILN 188 (200)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 250
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.55 E-value=1.7e-07 Score=95.20 Aligned_cols=117 Identities=9% Similarity=0.144 Sum_probs=89.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+. ..-++|+|+|.+.+.++ +.+..|+..++.....
T Consensus 63 ~~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 116 (218)
T 4djt_A 63 FNVWDTAGQEKKAVLKDV--YYI----GASGAILFFDVTSRITC-QNLARWVKEFQAVVGN------------------- 116 (218)
T ss_dssp EEEEEECSGGGTSCCCHH--HHT----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCS-------------------
T ss_pred EEEEecCCchhhchHHHH--Hhh----cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 689999998665554444 122 13378999999999988 8888998887664321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
++|+|||+||+|+... .......++.+|..+|+..|.+|++.
T Consensus 117 ---------------------------------~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (218)
T 4djt_A 117 ---------------------------------EAPIVVCANKIDIKNR-----QKISKKLVMEVLKGKNYEYFEISAKT 158 (218)
T ss_dssp ---------------------------------SSCEEEEEECTTCC---------CCHHHHHHHTTTCCCEEEEEBTTT
T ss_pred ---------------------------------CCCEEEEEECCCCccc-----cccCHHHHHHHHHHcCCcEEEEecCC
Confidence 3789999999998632 22334567788899999999999999
Q ss_pred hhhHHHHHHHHhhhhcCCCCC
Q psy11649 553 PGLVKRTRDILNHYAFSSHLA 573 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~~~~ 573 (890)
+.|++.++.+|...+......
T Consensus 159 g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 159 AHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp TBTTTHHHHHHHHHHHCCTTC
T ss_pred CCCHHHHHHHHHHHHhccccc
Confidence 999999999999999875443
No 251
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=6.4e-08 Score=95.73 Aligned_cols=114 Identities=12% Similarity=0.151 Sum_probs=84.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+.+|+..|...+..+... .+.. .-++|+|+|.+.|.++ +.++.|+..+..+..
T Consensus 66 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 118 (195)
T 1x3s_A 66 LAIWDTAGQERFRTLTPS--YYRG----AQGVILVYDVTRRDTF-VKLDNWLNELETYCT-------------------- 118 (195)
T ss_dssp EEEEEECSSGGGCCSHHH--HHTT----CCEEEEEEETTCHHHH-HTHHHHHHHHTTCCS--------------------
T ss_pred EEEEeCCCchhhhhhhHH--Hhcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 589999998766665544 2222 2379999999999887 777788765432110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
..++|++||+||+|+... + ...+.++.+|..+|+..|.+|++.
T Consensus 119 -------------------------------~~~~p~ilv~nK~Dl~~~-~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (195)
T 1x3s_A 119 -------------------------------RNDIVNMLVGNKIDKENR-E-----VDRNEGLKFARKHSMLFIEASAKT 161 (195)
T ss_dssp -------------------------------CSCCEEEEEEECTTSSSC-C-----SCHHHHHHHHHHTTCEEEECCTTT
T ss_pred -------------------------------cCCCcEEEEEECCcCccc-c-----cCHHHHHHHHHHcCCEEEEecCCC
Confidence 114899999999999421 1 112346678889999999999999
Q ss_pred hhhHHHHHHHHhhhhcCC
Q psy11649 553 PGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg~ 570 (890)
+.|++.++.+|...+...
T Consensus 162 ~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 162 CDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp CTTHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999998753
No 252
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.54 E-value=5.3e-07 Score=88.18 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=86.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+..|...+..+... .+. ..-++++|+|++.+.++ +.+. .|+..++.+..
T Consensus 55 ~~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 108 (186)
T 1mh1_A 55 LGLWDTAGQEDYDRLRPL--SYP----QTDVSLICFSLVSPASF-ENVRAKWYPEVRHHCP------------------- 108 (186)
T ss_dssp EEEECCCCSGGGTTTGGG--GCT----TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHST-------------------
T ss_pred EEEEECCCCHhHHHHHHH--hcc----CCcEEEEEEECCChhhH-HHHHHHHHHHHHHhCC-------------------
Confidence 479999999766655444 222 22378999999999988 5554 78776654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHH---------HHHHHHHHHHcC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIA---------VQCLRYLAHVNG 542 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~I---------q~~lR~fcl~yG 542 (890)
++|+|||+||+|+...- +..+.+ ....+.+|..+|
T Consensus 109 ----------------------------------~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 109 ----------------------------------NTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp ----------------------------------TSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred ----------------------------------CCCEEEEeEcccccccc--hhhhhhcccccccCCHHHHHHHHHhcC
Confidence 37899999999997431 111111 245677889999
Q ss_pred C-ceeEeccCChhhHHHHHHHHhhhhcCCCC
Q psy11649 543 A-SLLFHSSLDPGLVKRTRDILNHYAFSSHL 572 (890)
Q Consensus 543 A-sL~ftS~K~~~n~~~l~kyi~hr~fg~~~ 572 (890)
+ ..|.+|++.+.|++.++.+|...++.-+.
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 8 89999999999999999999999876443
No 253
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.54 E-value=9.5e-08 Score=95.49 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=82.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.++.|+..++.+..
T Consensus 77 l~l~Dt~G~~~~~~~~~~--~~~~----~d~iilV~D~~~~~s~-~~~~~~~~~i~~~~~-------------------- 129 (192)
T 2il1_A 77 LQIWDTAGQERFNSITSA--YYRS----AKGIILVYDITKKETF-DDLPKWMKMIDKYAS-------------------- 129 (192)
T ss_dssp EEEEEECCSGGGHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred EEEEeCCCcHHHHHHHHH--HhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 589999998766655444 2221 2378999999999987 888889776654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K 551 (890)
.++|++||+||+|+...-+ .....++.+|..+ |...+.||+|
T Consensus 130 --------------------------------~~~piilV~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 130 --------------------------------EDAELLLVGNKLDCETDRE-----ITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp --------------------------------TTCEEEEEEECGGGGGGCC-----SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred --------------------------------CCCcEEEEEECcccccccc-----cCHHHHHHHHHhcCCCeEEEEeCC
Confidence 1478999999999964211 1122346677775 8899999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++++|...+.
T Consensus 173 ~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 254
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.54 E-value=2.1e-07 Score=92.89 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=86.8
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++++|+|.+.+.++ +.+..|+..+..+...
T Consensus 63 ~~~l~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------ 117 (206)
T 2bov_A 63 QIDILDTAGQEDYAAIRDN--YFRS----GEGFLCVFSITEMESF-AATADFREQILRVKED------------------ 117 (206)
T ss_dssp EEEEEECCCTTCCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHTTC------------------
T ss_pred EEEEEcCCChhhhHHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC------------------
Confidence 3579999998776665554 2222 2378999999999987 8888888777653221
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|+|||+||+|+...-+ .-...++.+|..+|+..|.+|++
T Consensus 118 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 118 ---------------------------------ENVPFLLVGNKSDLEDKRQ-----VSVEEAKNRAEQWNVNYVETSAK 159 (206)
T ss_dssp ---------------------------------SCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEEECTT
T ss_pred ---------------------------------CCCCEEEEEeccCcccccc-----ccHHHHHHHHHHhCCeEEEEeCC
Confidence 1489999999999974321 11234667788899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++.+|...+..
T Consensus 160 ~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988864
No 255
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.54 E-value=1.3e-07 Score=91.34 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=78.5
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+...+.-. .+.. .-++++|+|++.|.++ +.+..|+..+..+...
T Consensus 53 ~~i~D~~g~~~~~~~~~~~-~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 107 (169)
T 3q85_A 53 LIVYDIWEQGDAGGWLQDH-CLQT----GDAFLIVFSVTDRRSF-SKVPETLLRLRAGRPH------------------- 107 (169)
T ss_dssp EEEECCCCC--------CH-HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSTT-------------------
T ss_pred EEEEECCCccccchhhhhh-hhcc----CCEEEEEEECCChHHH-HHHHHHHHHHHhcccC-------------------
Confidence 4799999986554422210 1111 2378999999999987 8888888766542110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|+|||+||+|+...- ......++.+|..+|+..+.+|++.
T Consensus 108 --------------------------------~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T 3q85_A 108 --------------------------------HDLPVILVGNKSDLARSR-----EVSLEEGRHLAGTLSCKHIETSAAL 150 (169)
T ss_dssp --------------------------------SCCCEEEEEECTTCGGGC-----CSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred --------------------------------CCCCEEEEeeCcchhhcc-----cCCHHHHHHHHHHcCCcEEEecCcc
Confidence 148999999999986321 1223446788999999999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++..|...+
T Consensus 151 ~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 151 HHNTRELFEGAVRQI 165 (169)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 256
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.54 E-value=9.9e-08 Score=94.67 Aligned_cols=114 Identities=17% Similarity=0.286 Sum_probs=81.5
Q ss_pred eeEEEEeCCCcccc-cccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 392 ICHLWELGSGTSRL-EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 392 i~~vW~L~G~~~~~-~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
-..+|+..|...+. .+... .+. ..-++|+|+|.+.+.++ +.+..|+..+..+...
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~--~~~----~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~----------------- 125 (189)
T 1z06_A 70 KIQLWDTAGQERFRKSMVQH--YYR----NVHAVVFVYDMTNMASF-HSLPAWIEECKQHLLA----------------- 125 (189)
T ss_dssp EEEEEECCCSHHHHTTTHHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHCCC-----------------
T ss_pred EEEEEECCCchhhhhhhhHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC-----------------
Confidence 36899999986554 43333 122 12389999999999988 7888898777653321
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS 550 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~ 550 (890)
.++|+|||+||+|+...-+ .-...++.+|..+|+..+.+|+
T Consensus 126 ----------------------------------~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa 166 (189)
T 1z06_A 126 ----------------------------------NDIPRILVGNKCDLRSAIQ-----VPTDLAQKFADTHSMPLFETSA 166 (189)
T ss_dssp ----------------------------------SCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCCEEECCS
T ss_pred ----------------------------------CCCCEEEEEECccccccce-----eCHHHHHHHHHHcCCEEEEEeC
Confidence 1479999999999964211 1123457788899999999999
Q ss_pred CCh---hhHHHHHHHHhhhhc
Q psy11649 551 LDP---GLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~---~n~~~l~kyi~hr~f 568 (890)
|.+ .|++.++..|...+.
T Consensus 167 ~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 167 KNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SSGGGGSCHHHHHHHHC----
T ss_pred CcCCcccCHHHHHHHHHHHHh
Confidence 999 999999999887653
No 257
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.53 E-value=2.4e-07 Score=88.25 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=84.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++++|+|.+.++++ +.+..|+..++.+...
T Consensus 53 ~~~~D~~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~------------------- 106 (166)
T 2ce2_X 53 LDILDTAGQEEYSAMRDQ--YMRT----GEGFLCVFAINNTKSF-EDIHQYREQIKRVKDS------------------- 106 (166)
T ss_dssp EEEEECCCCSSCCHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHTC-------------------
T ss_pred EEEEECCCchhhhHHHHH--hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 578999998766655553 1221 2278999999999987 7888898877664321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|++||+||+|+... . .....++.+|..+|+..+.+|++.
T Consensus 107 --------------------------------~~~p~iiv~nK~Dl~~~--~----~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (166)
T 2ce2_X 107 --------------------------------DDVPMVLVGNKSDLAAR--T----VESRQAQDLARSYGIPYIETSAKT 148 (166)
T ss_dssp --------------------------------SCCCEEEEEECTTCSCC--C----SCHHHHHHHHHHHTCCEEEECTTT
T ss_pred --------------------------------CCCcEEEEEEchhhhhc--c----cCHHHHHHHHHHcCCeEEEecCCC
Confidence 14789999999999752 1 113456677888999999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++.+|...+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 149 RQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998775
No 258
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.53 E-value=3.2e-07 Score=90.76 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=79.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++++|+|++.++++ +.++.|+..++.+...
T Consensus 71 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 124 (190)
T 3con_A 71 LDILDTAGQEEYSAMRDQ--YMRT----GEGFLCVFAINNSKSF-ADINLYREQIKRVKDS------------------- 124 (190)
T ss_dssp EEEEECCC-------------CTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHTC-------------------
T ss_pred EEEEECCChHHHHHHHHH--hhCc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 579999998766655544 2221 2378899999999987 8889998877654321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|++||+||+|+... . .....++.+|..+|+..+.||++.
T Consensus 125 --------------------------------~~~p~ilv~nK~Dl~~~--~----~~~~~~~~~~~~~~~~~~~~Sa~~ 166 (190)
T 3con_A 125 --------------------------------DDVPMVLVGNKCDLPTR--T----VDTKQAHELAKSYGIPFIETSAKT 166 (190)
T ss_dssp --------------------------------SCCCEEEEEECTTCSCC--C----SCHHHHHHHHHHHTCCEEECCTTT
T ss_pred --------------------------------CCCeEEEEEECCcCCcc--c----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence 14799999999998741 1 123455677888999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.+++.|...+..
T Consensus 167 ~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 167 RQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887653
No 259
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.52 E-value=3e-07 Score=89.86 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=83.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+..|...+..+... .+.. .-++++|+|.+.|.++ +.+. .|+..++.+..
T Consensus 58 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 111 (182)
T 3bwd_D 58 LGLWDTAGQEDYNRLRPL--SYRG----ADVFILAFSLISKASY-ENVSKKWIPELKHYAP------------------- 111 (182)
T ss_dssp CEEECCCC-CTTTTTGGG--GGTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT-------------------
T ss_pred EEEEECCCChhhhhhHHh--hccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 479999998766655544 2221 2379999999999988 5554 78877654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-----HHHHHHHHHHHHHHHcCC-ce
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-----KKRIAVQCLRYLAHVNGA-SL 545 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-----~~d~Iq~~lR~fcl~yGA-sL 545 (890)
++|++||+||+|+..+-... ........++.+|..+|+ ..
T Consensus 112 ----------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 157 (182)
T 3bwd_D 112 ----------------------------------GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY 157 (182)
T ss_dssp ----------------------------------TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEE
T ss_pred ----------------------------------CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEE
Confidence 37899999999997431100 000134567788999997 89
Q ss_pred eEeccCChhhHHHHHHHHhhhhc
Q psy11649 546 LFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 546 ~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
|.||+|.+.|++.++..|...++
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 260
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.52 E-value=1.1e-07 Score=95.83 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=83.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+.+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 71 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 123 (213)
T 3cph_A 71 LQLWDTAGQERFRTITTA--YYRG----AMGIILVYDVTDERTF-TNIKQWFKTVNEHAN-------------------- 123 (213)
T ss_dssp EEEECCTTGGGGTCCCHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHTT--------------------
T ss_pred EEEEeCCCcHHHHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 589999998666554443 2221 2378999999999986 888888877765321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...- .....++.+|..+|+..|.+|++.
T Consensus 124 --------------------------------~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (213)
T 3cph_A 124 --------------------------------DEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKN 165 (213)
T ss_dssp --------------------------------TCSEEEEEEECTTCSSCC------SCHHHHHHHHHHHTCCEEECBTTT
T ss_pred --------------------------------CCCCEEEEEECCCCcccc------cCHHHHHHHHHHcCCEEEEEeCCC
Confidence 137899999999994211 112345677888899999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++.+|...+..
T Consensus 166 ~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 166 DDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TBSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 261
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.52 E-value=2.3e-07 Score=100.84 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=73.1
Q ss_pred CcchhhHHhhhhccccccccCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649 93 GTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI 171 (890)
Q Consensus 93 ~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li 171 (890)
++++..+...+ ++ ++|++++|+|+++|. ++ +.+..|+..+..
T Consensus 66 ~er~~~l~r~~----~~--naD~vliV~d~~~p~~s~-~~l~~~l~~~~~------------------------------ 108 (302)
T 2yv5_A 66 EERKNLLIRPK----VA--NVDRVIIVETLKMPEFNN-YLLDNMLVVYEY------------------------------ 108 (302)
T ss_dssp CCCSCEEETTE----EE--SCCEEEEEECSTTTTCCH-HHHHHHHHHHHH------------------------------
T ss_pred CChHHHHhHHH----HH--hcCEEEEEEECCCCCCCH-HHHHHHHHHHHh------------------------------
Confidence 45555555555 33 699999999999986 76 678888875432
Q ss_pred cCCCCcEEEEeecccCCCCCCcchhhhh-HHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649 172 RTFPVPLILIGGKYDLFENLEPNKKRIA-VQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234 (890)
Q Consensus 172 ~~l~IPiIVVgNK~Dl~~d~d~e~r~~i-~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~ 234 (890)
.++|+++|+||+|+.. .+.+. .+....++..+|..++++||+++.|+++|++.+..
T Consensus 109 --~~~~~ilV~NK~DL~~-----~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 109 --FKVEPVIVFNKIDLLN-----EEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp --TTCEEEEEECCGGGCC-----HHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred --CCCCEEEEEEcccCCC-----ccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 2689999999999962 22212 34556677778999999999999999999877643
No 262
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.52 E-value=2.3e-07 Score=90.30 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=77.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.+..|+..+..+...
T Consensus 60 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 113 (182)
T 1ky3_A 60 MQVWDTAGQERFQSLGVA--FYRG----ADCCVLVYDVTNASSF-ENIKSWRDEFLVHANV------------------- 113 (182)
T ss_dssp EEEECCC----------C--CSTT----CCEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------
T ss_pred EEEEECCCChHhhhhhHH--Hhhc----CCEEEEEEECCChHHH-HHHHHHHHHHHHHhcc-------------------
Confidence 589999998766655444 2221 2378999999999987 8889998887765431
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH-HcCCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-VNGASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl-~yGAsL~ftS~K 551 (890)
....++|++||+||+|+...-.. .....++.+|. ..+...+.||++
T Consensus 114 -----------------------------~~~~~~p~ilv~nK~Dl~~~~~~----v~~~~~~~~~~~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 114 -----------------------------NSPETFPFVILGNKIDAEESKKI----VSEKSAQELAKSLGDIPLFLTSAK 160 (182)
T ss_dssp -----------------------------SCTTTCCEEEEEECTTSCGGGCC----SCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred -----------------------------cCcCCCcEEEEEECCcccccccc----CCHHHHHHHHHhcCCCeEEEEecC
Confidence 00125899999999998632111 11233455665 567899999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++..|...+.
T Consensus 161 ~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 161 NAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 263
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.52 E-value=1.9e-07 Score=93.99 Aligned_cols=117 Identities=19% Similarity=0.234 Sum_probs=85.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
...+|+..|...+..+... .+.. .-++++|+|++.|.++-+..+.|+..++.+..
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------- 128 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPL--SYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFCP------------------- 128 (201)
T ss_dssp EEEEECCCCSGGGTTTGGG--GCTT----CSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-------------------
T ss_pred EEEEEECCCchhHHHHHHH--hcCC----CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-------------------
Confidence 3589999998766665554 2222 23789999999999884333788877654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHH---------HHHHHHHHHHHcC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI---------AVQCLRYLAHVNG 542 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~---------Iq~~lR~fcl~yG 542 (890)
++|++||+||+|+.... +..+. -....+.+|..+|
T Consensus 129 ----------------------------------~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (201)
T 2gco_A 129 ----------------------------------NVPIILVGNKKDLRQDE--HTRRELAKMKQEPVRSEEGRDMANRIS 172 (201)
T ss_dssp ----------------------------------TCCEEEEEECGGGTTCH--HHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred ----------------------------------CCCEEEEEecHHhhcCc--cchhhhcccccCcCCHHHHHHHHHhCC
Confidence 37899999999997531 11111 1346678899999
Q ss_pred C-ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 543 A-SLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 543 A-sL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
+ ..|.||++.+.|++.++..|...++.
T Consensus 173 ~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 173 AFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9 89999999999999999999988764
No 264
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.52 E-value=2.7e-07 Score=93.25 Aligned_cols=121 Identities=21% Similarity=0.206 Sum_probs=85.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
...+|+..|...+..+... .+.. .-++|+|+|++.|.++-+..+.|+..++.+..
T Consensus 58 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~------------------- 112 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSRLRPL--SYRG----ADIFVLAFSLISKASYENVLKKWMPELRRFAP------------------- 112 (212)
T ss_dssp EEEEECCCCCCCCCC--CG--GGTT----CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-------------------
T ss_pred EEEEEECCCcHHHHHHHHh--hccC----CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-------------------
Confidence 4589999999777666554 2222 23789999999999984444589877665210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh---hHHHHHHHHHHHHHHHcCC-ceeE
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP---NKKRIAVQCLRYLAHVNGA-SLLF 547 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~---E~~d~Iq~~lR~fcl~yGA-sL~f 547 (890)
++|+|||+||+|+..+-.. +....-...++.+|..+|+ ..|.
T Consensus 113 ----------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (212)
T 2j0v_A 113 ----------------------------------NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE 158 (212)
T ss_dssp ----------------------------------TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEE
T ss_pred ----------------------------------CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEE
Confidence 3789999999998742100 0000124556788889997 8999
Q ss_pred eccCChhhHHHHHHHHhhhhcCCC
Q psy11649 548 HSSLDPGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 548 tS~K~~~n~~~l~kyi~hr~fg~~ 571 (890)
||++.+.|++.++..|...+....
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred ccCCCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999999987643
No 265
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.52 E-value=1.6e-07 Score=93.86 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=84.5
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
...+|+..|...+..+... .+.. .-++|+|+|++.|.++ +.+ +.|+..++.+..
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------ 123 (201)
T 2q3h_A 69 RLQLCDTAGQDEFDKLRPL--CYTN----TDIFLLCFSVVSPSSF-QNVSEKWVPEIRCHCP------------------ 123 (201)
T ss_dssp EEEEEECCCSTTCSSSGGG--GGTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCS------------------
T ss_pred EEEEEECCCCHHHHHHhHh--hcCC----CcEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------
Confidence 3579999999776665554 2221 2379999999999988 555 478876654210
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-------HHHHHHHHHHHHHHHcCC
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-------KKRIAVQCLRYLAHVNGA 543 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-------~~d~Iq~~lR~fcl~yGA 543 (890)
++|+|||+||+|+....+.. ........++.+|..+|+
T Consensus 124 -----------------------------------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 124 -----------------------------------KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp -----------------------------------SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred -----------------------------------CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 37899999999997431100 011123456788888998
Q ss_pred -ceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 544 -SLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 544 -sL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
..|.||++.+.|++.++.+|...++
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988775
No 266
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.51 E-value=3.2e-07 Score=89.24 Aligned_cols=116 Identities=10% Similarity=0.136 Sum_probs=85.9
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++++|+|++.+.++ +.+..|+..+..+...
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------ 111 (177)
T 1wms_A 57 TMQIWDTAGQERFRSLRTP--FYRG----SDCCLLTFSVDDSQSF-QNLSNWKKEFIYYADV------------------ 111 (177)
T ss_dssp EEEEEECCCCGGGHHHHGG--GGTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTC------------------
T ss_pred EEEEEeCCCchhhhhhHHH--HHhc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHccc------------------
Confidence 3689999998776665544 2222 2378999999999987 8889999888765432
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEecccccc-CCChhHHHHHHHHHHHHHH-HcCCceeEec
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFE-NLEPNKKRIAVQCLRYLAH-VNGASLLFHS 549 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~-~~~~E~~d~Iq~~lR~fcl-~yGAsL~ftS 549 (890)
....++|++||+||+|+.. ... ...++.+|. ..++..|.+|
T Consensus 112 ------------------------------~~~~~~p~i~v~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~S 154 (177)
T 1wms_A 112 ------------------------------KEPESFPFVILGNKIDISERQVS-------TEEAQAWCRDNGDYPYFETS 154 (177)
T ss_dssp ------------------------------SCTTTSCEEEEEECTTCSSCSSC-------HHHHHHHHHHTTCCCEEECC
T ss_pred ------------------------------cccCCCcEEEEEECCcccccccC-------HHHHHHHHHhcCCceEEEEe
Confidence 0012589999999999972 111 223455565 6788999999
Q ss_pred cCChhhHHHHHHHHhhhhcC
Q psy11649 550 SLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~fg 569 (890)
++.+.|++.++..|...++.
T Consensus 155 a~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 155 AKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988865
No 267
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.49 E-value=1.6e-07 Score=92.62 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=79.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|+..+..+... .+.. .-++|+|+|.+.+... +..+.|.. +..++..+ . .
T Consensus 76 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~D~~~~~~~-~~~~s~~~-l~~~l~~~----~---~--------- 131 (198)
T 3t1o_A 76 FHLYTVPGQVFYNASRKL--ILRG----VDGIVFVADSAPNRLR-ANAESMRN-MRENLAEY----G---L--------- 131 (198)
T ss_dssp EEEEECCSCCSCSHHHHH--HTTT----CCEEEEEEECCGGGHH-HHHHHHHH-HHHHHHHT----T---C---------
T ss_pred EEEEeCCChHHHHHHHHH--HHhc----CCEEEEEEECCcchhh-HhHHHHHH-HHHHHHhh----c---c---------
Confidence 589999999777766665 2332 2378999999976433 33333322 12222220 0 0
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K 551 (890)
...++|+||||||+|+...... ..++.+|..+|+ ..+.||++
T Consensus 132 ------------------------------~~~~~piilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~ 174 (198)
T 3t1o_A 132 ------------------------------TLDDVPIVIQVNKRDLPDALPV-------EMVRAVVDPEGKFPVLEAVAT 174 (198)
T ss_dssp ------------------------------CTTSSCEEEEEECTTSTTCCCH-------HHHHHHHCTTCCSCEEECBGG
T ss_pred ------------------------------ccCCCCEEEEEEchhcccccCH-------HHHHHHHHhcCCceEEEEecC
Confidence 0124899999999999765332 346778888999 99999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...+..
T Consensus 175 ~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 175 EGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp GTBTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999887753
No 268
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.49 E-value=2.1e-07 Score=91.88 Aligned_cols=111 Identities=15% Similarity=0.251 Sum_probs=81.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+.. .-++++|+|.+.|.++ +.++.|+..+..+
T Consensus 94 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~--------------------- 145 (208)
T 3clv_A 94 KFDIWDTAGQERYASIVPL--YYRG----ATCAIVVFDISNSNTL-DRAKTWVNQLKIS--------------------- 145 (208)
T ss_dssp EEEEEECTTGGGCTTTHHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHH---------------------
T ss_pred EEEEEECCCcHHHHHHHHH--HhcC----CCEEEEEEECCCHHHH-HHHHHHHHHHHhh---------------------
Confidence 3579999998666655443 2221 2279999999999987 7788887766431
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.++|+|||+||+| ...-. .....++.+|..+|...|.+|++
T Consensus 146 ---------------------------------~~~piilv~NK~D-~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~ 186 (208)
T 3clv_A 146 ---------------------------------SNYIIILVANKID-KNKFQ-----VDILEVQKYAQDNNLLFIQTSAK 186 (208)
T ss_dssp ---------------------------------SCCEEEEEEECTT-CC-CC-----SCHHHHHHHHHHTTCEEEEECTT
T ss_pred ---------------------------------CCCcEEEEEECCC-ccccc-----CCHHHHHHHHHHcCCcEEEEecC
Confidence 1278999999999 32111 11234567788899999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...++.
T Consensus 187 ~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 187 TGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887753
No 269
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.48 E-value=2.3e-07 Score=94.61 Aligned_cols=114 Identities=10% Similarity=0.091 Sum_probs=87.3
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+. ..-++|+|+|.+.+.++ +.+..|+..+..+..
T Consensus 65 ~~~i~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 118 (221)
T 3gj0_A 65 KFNVWDTAGQEKFGGLRDG--YYI----QAQCAIIMFDVTSRVTY-KNVPNWHRDLVRVCE------------------- 118 (221)
T ss_dssp EEEEEEECSGGGTSCCCHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHST-------------------
T ss_pred EEEEEeCCChHHHhHHHHH--HHh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence 3589999998666655444 222 23389999999999987 888889887765311
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
++|+|||+||+|+...-..+ ....+|..+|+..|.||+|
T Consensus 119 ----------------------------------~~p~ilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~Sa~ 157 (221)
T 3gj0_A 119 ----------------------------------NIPIVLCGNKVDIKDRKVKA-------KSIVFHRKKNLQYYDISAK 157 (221)
T ss_dssp ----------------------------------TCCEEEEEECTTSSSCSSCG-------GGCCHHHHHTCEEEECBGG
T ss_pred ----------------------------------CCCEEEEEECCccccccccH-------HHHHHHHHcCCEEEEEeCC
Confidence 37899999999997432222 3445778889999999999
Q ss_pred ChhhHHHHHHHHhhhhcCCCC
Q psy11649 552 DPGLVKRTRDILNHYAFSSHL 572 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~~~ 572 (890)
.+.|++.++.+|...+.+.+.
T Consensus 158 ~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 158 SNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp GTBTTTHHHHHHHHHHHTCTT
T ss_pred CCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999987643
No 270
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.48 E-value=6.7e-07 Score=87.69 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=83.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|...+..+... .+.. .-++++|+|++.+.++ +.+..|+..+..+...
T Consensus 54 ~~i~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 107 (189)
T 4dsu_A 54 LDILDTAGQEEYSAMRDQ--YMRT----GEGFLCVFAINNTKSF-EDIHHYREQIKRVKDS------------------- 107 (189)
T ss_dssp EEEEECCCC---CTTHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHTTC-------------------
T ss_pred EEEEECCCcHHHHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence 578999998776665554 2222 2378999999999887 8888888777653221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...- .....++.+|..+|+..+.+|++.
T Consensus 108 --------------------------------~~~p~i~v~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~ 149 (189)
T 4dsu_A 108 --------------------------------EDVPMVLVGNKCDLPSRT------VDTKQAQDLARSYGIPFIETSAKT 149 (189)
T ss_dssp --------------------------------SCCCEEEEEECTTSSSCS------SCHHHHHHHHHHHTCCEEECCTTT
T ss_pred --------------------------------CCCcEEEEEECccCcccc------cCHHHHHHHHHHcCCeEEEEeCCC
Confidence 147999999999997321 122346678888899999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|...+..
T Consensus 150 g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 150 RQGVDDAFYTLVREIRK 166 (189)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887753
No 271
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=2.4e-07 Score=92.62 Aligned_cols=112 Identities=17% Similarity=0.088 Sum_probs=82.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|... ..+... .+. ..-++++|+|++.|.++ +.++.|+..+.++...
T Consensus 78 ~~l~Dt~G~~~-~~~~~~--~~~----~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~------------------- 130 (196)
T 2atv_A 78 MEILDTAGQED-TIQREG--HMR----WGEGFVLVYDITDRGSF-EEVLPLKNILDEIKKP------------------- 130 (196)
T ss_dssp EEEEECCCCCC-CHHHHH--HHH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-------------------
T ss_pred EEEEECCCCCc-ccchhh--hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhhCC-------------------
Confidence 57999999865 222222 111 12378999999999987 8889998877664321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+|||+||+|+...-+ .-...++.+|..+|+..|.+|++.
T Consensus 131 --------------------------------~~~piilv~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 131 --------------------------------KNVTLILVGNKADLDHSRQ-----VSTEEGEKLATELACAFYECSACT 173 (196)
T ss_dssp --------------------------------SCCCEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTSEEEECCTTT
T ss_pred --------------------------------CCCcEEEEEECcccccccc-----cCHHHHHHHHHHhCCeEEEECCCc
Confidence 1479999999999974311 112345677888899999999999
Q ss_pred hh-hHHHHHHHHhhhhc
Q psy11649 553 PG-LVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~-n~~~l~kyi~hr~f 568 (890)
+. |++.++..|...+.
T Consensus 174 g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 174 GEGNITEIFYELCREVR 190 (196)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99 99999999988775
No 272
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.47 E-value=6.4e-07 Score=89.72 Aligned_cols=117 Identities=10% Similarity=0.073 Sum_probs=81.6
Q ss_pred eeEEEEeCCCccccccc---ccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccc
Q psy11649 392 ICHLWELGSGTSRLEVA---SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR 468 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll---~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~ 468 (890)
-.++|+..|+..+..+. .. .+.. .-++|+|+|++.+ +.++++.|...+++....
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~--~~~~----~~~~i~v~d~~~~--~~~~~~~~~~~l~~~~~~--------------- 126 (196)
T 3llu_A 70 NFQIWDFPGQMDFFDPTFDYEM--IFRG----TGALIYVIDAQDD--YMEALTRLHITVSKAYKV--------------- 126 (196)
T ss_dssp CEEEEECCSSCCTTCTTCCHHH--HHHT----CSEEEEEEETTSC--CHHHHHHHHHHHHHHHHH---------------
T ss_pred EEEEEECCCCHHHHhhhhhccc--cccc----CCEEEEEEECCCc--hHHHHHHHHHHHHHHHhc---------------
Confidence 35899999997655544 22 1222 3378999999998 346777776666553221
Q ss_pred cccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC--hhHHHHHHHHHHHHHH----HcC
Q psy11649 469 TADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE--PNKKRIAVQCLRYLAH----VNG 542 (890)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~--~E~~d~Iq~~lR~fcl----~yG 542 (890)
.-++|+||||||+|+..+-. +.+...-......+|. .+|
T Consensus 127 -----------------------------------~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 127 -----------------------------------NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp -----------------------------------CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred -----------------------------------CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 01489999999999974211 1123444555677888 789
Q ss_pred CceeEeccCChhhHHHHHHHHhhhh
Q psy11649 543 ASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 543 AsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
+..+.||+|. .|++.++..|...+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 9999999999 99999999988765
No 273
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.47 E-value=9.6e-07 Score=87.24 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=81.7
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+. ..-++|+|+|++.+.++-+.++.|+..++.+..
T Consensus 57 ~~i~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-------------------- 110 (184)
T 1m7b_A 57 LSLWDTSGSPYYDNVRPL--SYP----DSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-------------------- 110 (184)
T ss_dssp EEEEEECCSGGGTTTGGG--GCT----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--------------------
T ss_pred EEEEECCCChhhhhhHHh--hcC----CCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--------------------
Confidence 589999998766655544 222 223789999999999983333888876654210
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-------HHHHHHHHHHHHHHHcC-Cc
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-------KKRIAVQCLRYLAHVNG-AS 544 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-------~~d~Iq~~lR~fcl~yG-As 544 (890)
++|+||||||+|+..+.... +...-...++.+|..+| ..
T Consensus 111 ---------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 111 ---------------------------------NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp ---------------------------------TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred ---------------------------------CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 37899999999997431100 00011345678888899 57
Q ss_pred eeEeccC-ChhhHHHHHHHHhhhhc
Q psy11649 545 LLFHSSL-DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 545 L~ftS~K-~~~n~~~l~kyi~hr~f 568 (890)
.|.||+| .+.|++.++..|...+.
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHh
Confidence 8899999 68999999999987654
No 274
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.47 E-value=2.3e-07 Score=94.60 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=76.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
+.+|+..|...+..+... .+. ..-++|+|+|++.+.++ +.+ +.|+..++.+..
T Consensus 84 l~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------- 137 (214)
T 2j1l_A 84 LHIWDTAGQDDYDRLRPL--FYP----DASVLLLCFDVTSPNSF-DNIFNRWYPEVNHFCK------------------- 137 (214)
T ss_dssp EEEEEC---------------------CEEEEEEEEETTCHHHH-HHHHHTHHHHHHHHCS-------------------
T ss_pred EEEEECCCchhhhHHHHH--Hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 589999998766655444 122 23478999999999988 555 478877654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHH---------HHHHHHHHHHcC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIA---------VQCLRYLAHVNG 542 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~I---------q~~lR~fcl~yG 542 (890)
++|+|||+||+|+...- +..+.+ ...++.+|..+|
T Consensus 138 ----------------------------------~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 138 ----------------------------------KVPIIVVGCKTDLRKDK--SLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp ----------------------------------SCCEEEEEECGGGGSCH--HHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred ----------------------------------CCCEEEEEEChhhhccc--hhhhhhcccccCcccHHHHHHHHHhcC
Confidence 37899999999997531 111111 245688999999
Q ss_pred C-ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 543 A-SLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 543 A-sL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
+ ..|.||+|.+.|++.++..|...++.
T Consensus 182 ~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 182 AVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 8 89999999999999999999988764
No 275
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.47 E-value=7.4e-07 Score=85.41 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=82.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++++|+|.+.|.++ +.++.|+..+..+...
T Consensus 53 ~~l~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 106 (167)
T 1c1y_A 53 LEILDTAGTEQFTAMRDL--YMKN----GQGFALVYSITAQSTF-NDLQDLREQILRVKDT------------------- 106 (167)
T ss_dssp EEEEEECSSCSSTTHHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------
T ss_pred EEEEECCChHHHHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhhCc-------------------
Confidence 589999998766665544 2222 2378999999999887 7888888776553221
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K 551 (890)
.++|++||+||+|+...-. .-...++.+|..+ +...+.+|++
T Consensus 107 --------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (167)
T 1c1y_A 107 --------------------------------EDVPMILVGNKCDLEDERV-----VGKEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp --------------------------------SCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTSCEEEECBTT
T ss_pred --------------------------------CCCcEEEEEECcccccccc-----CCHHHHHHHHHHccCCcEEEecCC
Confidence 1479999999999974211 1123445667777 7889999999
Q ss_pred ChhhHHHHHHHHhhhh
Q psy11649 552 DPGLVKRTRDILNHYA 567 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~ 567 (890)
.+.|++.++.+|...+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 150 SKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=4.7e-07 Score=87.08 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=83.9
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++++|+|++.|.++ +.++.|+..+.++...
T Consensus 53 ~~~~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~------------------- 106 (172)
T 2erx_A 53 LQITDTTGSHQFPAMQRL--SISK----GHAFILVYSITSRQSL-EELKPIYEQICEIKGD------------------- 106 (172)
T ss_dssp EEEEECCSCSSCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTTHHHHHHHHHHHC--------------------
T ss_pred EEEEECCCchhhHHHHHH--hccc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence 589999998766655544 2222 2378999999999987 8888888877664321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
. -++|++||+||+|+...-+- -....+.+|..+|+..|.+|++.
T Consensus 107 ---------~----------------------~~~pii~v~nK~Dl~~~~~v-----~~~~~~~~~~~~~~~~~~~Sa~~ 150 (172)
T 2erx_A 107 ---------V----------------------ESIPIMLVGNKCDESPSREV-----QSSEAEALARTWKCAFMETSAKL 150 (172)
T ss_dssp ---------------------------------CCCEEEEEECGGGGGGCCS-----CHHHHHHHHHHHTCEEEECBTTT
T ss_pred ---------C----------------------CCCCEEEEEEcccccccccc-----CHHHHHHHHHHhCCeEEEecCCC
Confidence 0 14799999999999743111 12334567888899999999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.|++.++.+|...+
T Consensus 151 ~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 151 NHNVKELFQELLNLE 165 (172)
T ss_dssp TBSHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998755
No 277
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.47 E-value=4.7e-07 Score=87.67 Aligned_cols=113 Identities=18% Similarity=0.098 Sum_probs=76.4
Q ss_pred eEEEEeCCCccc--ccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 393 CHLWELGSGTSR--LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 393 ~~vW~L~G~~~~--~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
..+|+..|.... ..+... .+. ..-++++|+|++.|.++ +.+..|+..+.....
T Consensus 54 ~~~~D~~g~~~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~------------------ 108 (175)
T 2nzj_A 54 LVVVDTWEAEKLDKSWSQES--CLQ----GGSAYVIVYSIADRGSF-ESASELRIQLRRTHQ------------------ 108 (175)
T ss_dssp EEEECCC-------CHHHHH--TTT----SCSEEEEEEETTCHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred EEEEecCCCCccchhhhHHh--hcc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhc------------------
Confidence 479999998552 222222 111 12378999999999987 788888776544110
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS 550 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~ 550 (890)
..++|+||||||+|+...-+-. ....+.+|..+|+..+.||+
T Consensus 109 ---------------------------------~~~~piilv~NK~Dl~~~~~v~-----~~~~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 109 ---------------------------------ADHVPIILVGNKADLARCREVS-----VEEGRACAVVFDCKFIETSA 150 (175)
T ss_dssp ------------------------------------CCEEEEEECTTCTTTCCSC-----HHHHHHHHHHHTSEEEECBT
T ss_pred ---------------------------------cCCCCEEEEEEChhhccccccC-----HHHHHHHHHHcCCeEEEEec
Confidence 0148999999999997431111 12356778889999999999
Q ss_pred CChhhHHHHHHHHhhhhc
Q psy11649 551 LDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~f 568 (890)
|.+.|++.++..|...+.
T Consensus 151 ~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 278
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.47 E-value=3.8e-07 Score=91.33 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=86.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|++.|.++ +.++.|+..+..+...
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------ 112 (207)
T 1vg8_A 58 TMQIWDTAGQERFQSLGVA--FYRG----ADCCVLVFDVTAPNTF-KTLDSWRDEFLIQASP------------------ 112 (207)
T ss_dssp EEEEEEECSSGGGSCSCCG--GGTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC------------------
T ss_pred EEEEEeCCCcHHHHHhHHH--HHhC----CcEEEEEEECCCHHHH-HHHHHHHHHHHHhccc------------------
Confidence 3689999998666655444 2221 2378999999999987 8889998877764431
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH-HcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-VNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl-~yGAsL~ftS~ 550 (890)
....++|+|||+||+|+...- . ....++.+|. ..++..|.+|+
T Consensus 113 ------------------------------~~~~~~piilv~nK~Dl~~~~--~----~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 113 ------------------------------RDPENFPFVVLGNKIDLENRQ--V----ATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp ------------------------------SSGGGSCEEEEEECTTSSCCC--S----CHHHHHHHHHHTTSCCEEECBT
T ss_pred ------------------------------ccCCCCcEEEEEECCCCcccc--c----CHHHHHHHHHhcCCceEEEEeC
Confidence 001248999999999997211 1 1223455565 67899999999
Q ss_pred CChhhHHHHHHHHhhhhcCC
Q psy11649 551 LDPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~fg~ 570 (890)
+.+.|++.++..|...+...
T Consensus 157 ~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 279
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.47 E-value=3.6e-07 Score=92.90 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=82.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+..|...+..+... .+.. .-++|+|+|++.+.++ +.+ +.|+..++.+..
T Consensus 78 l~i~Dt~G~~~~~~~~~~--~~~~----~d~~ilv~D~~~~~s~-~~~~~~~~~~i~~~~~------------------- 131 (205)
T 1gwn_A 78 LSLWDTSGSPYYDNVRPL--SYPD----SDAVLICFDISRPETL-DSVLKKWKGEIQEFCP------------------- 131 (205)
T ss_dssp EEEEEECCSGGGTTTGGG--GCTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT-------------------
T ss_pred EEEEeCCCcHhhhHHHHh--hccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHHCC-------------------
Confidence 589999998766665554 2221 2379999999999988 555 889877654210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-------HHHHHHHHHHHHHHHcC-C
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-------KKRIAVQCLRYLAHVNG-A 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-------~~d~Iq~~lR~fcl~yG-A 543 (890)
++|+||||||+|+..+.... ....-...++.+|..+| .
T Consensus 132 ----------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 132 ----------------------------------NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp ----------------------------------TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred ----------------------------------CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence 37899999999997431100 00111345778888888 5
Q ss_pred ceeEeccC-ChhhHHHHHHHHhhhhc
Q psy11649 544 SLLFHSSL-DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 544 sL~ftS~K-~~~n~~~l~kyi~hr~f 568 (890)
..|.||+| .+.|++.++.+|...+.
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 78999999 68999999999987654
No 280
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.44 E-value=7.9e-08 Score=97.50 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=82.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.++.|+..+..+.
T Consensus 85 ~l~l~Dt~G~~~~~~~~~~--~~~~----~d~iilV~D~~~~~s~-~~~~~~l~~i~~~~-------------------- 137 (217)
T 2f7s_A 85 HLQLWDTAGQERFRSLTTA--FFRD----AMGFLLMFDLTSQQSF-LNVRNWMSQLQANA-------------------- 137 (217)
T ss_dssp EEEEEEEESHHHHHHHHHH--HHTT----CCEEEEEEETTCHHHH-HHHHHHHHTCCCCC--------------------
T ss_pred EEEEEECCCcHhHHhHHHH--HhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhc--------------------
Confidence 3589999998666655444 2222 2379999999999887 66666654321100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
...++|+|||+||+|+...-+ .-...++.+|..+|+..|.||++
T Consensus 138 -------------------------------~~~~~piilV~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 138 -------------------------------YCENPDIVLIGNKADLPDQRE-----VNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp -------------------------------TTTCCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCCEEEEBTT
T ss_pred -------------------------------CcCCCCEEEEEECCccccccc-----cCHHHHHHHHHHCCCcEEEEECC
Confidence 012589999999999964211 11345677888999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++.+|...+..
T Consensus 182 ~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 182 TGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 281
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.42 E-value=1e-06 Score=88.99 Aligned_cols=115 Identities=21% Similarity=0.223 Sum_probs=83.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+..|...+..+... .+. ..-++|+|+|.+.+.++ +.+ +.|+..++...
T Consensus 80 l~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------- 132 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRLRPL--SYP----QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHC-------------------- 132 (204)
T ss_dssp EEEEEECCSGGGTTTGGG--GCT----TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC--------------------
T ss_pred EEEEECCCchhhHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC--------------------
Confidence 469999999666655544 222 22379999999999998 555 48887776521
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHH-H------HHHHHHHHHHHHcCCc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKK-R------IAVQCLRYLAHVNGAS 544 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~-d------~Iq~~lR~fcl~yGAs 544 (890)
-++|+|||+||+|+...-+.+.. + .-....+.+|..+|+.
T Consensus 133 ---------------------------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 4gzl_A 133 ---------------------------------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
T ss_dssp ---------------------------------SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred ---------------------------------CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence 03789999999999743111110 0 1235678899999976
Q ss_pred -eeEeccCChhhHHHHHHHHhhhh
Q psy11649 545 -LLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 545 -L~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
.|.+|+|.+.|++.++..|...+
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 180 KYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998765
No 282
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=6.7e-07 Score=90.36 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=86.1
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
-..+|+..|...+..+... .+. ..-++++|+|++.|.++ +.+ +.|+..++....
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------ 128 (207)
T 2fv8_A 74 ELALWDTAGQEDYDRLRPL--SYP----DTDVILMCFSVDSPDSL-ENIPEKWVPEVKHFCP------------------ 128 (207)
T ss_dssp EEEEEECTTCTTCTTTGGG--GCT----TCCEEEEEEETTCHHHH-HHHHHTHHHHHHHHST------------------
T ss_pred EEEEEECCCcHHHHHHHHh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------
Confidence 3589999998766655444 222 12378999999999988 555 788777654110
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHH---------HHHHHHHHHHHc
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI---------AVQCLRYLAHVN 541 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~---------Iq~~lR~fcl~y 541 (890)
++|+|||+||+|+...- +..+. -....+.+|..+
T Consensus 129 -----------------------------------~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 129 -----------------------------------NVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp -----------------------------------TCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred -----------------------------------CCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHHHHHhc
Confidence 37899999999997431 11111 133567889999
Q ss_pred CC-ceeEeccCChhhHHHHHHHHhhhhcCCC
Q psy11649 542 GA-SLLFHSSLDPGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 542 GA-sL~ftS~K~~~n~~~l~kyi~hr~fg~~ 571 (890)
|+ ..|.||++.+.|++.++.+|...++.-.
T Consensus 172 ~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 172 QAYDYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99 8999999999999999999999887543
No 283
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.41 E-value=4.4e-08 Score=98.36 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=76.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|+..+..+... .+.. .-++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 84 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 136 (199)
T 3l0i_B 84 LQIWDTAGQERFRTITSS--YYRG----AHGIIVVYDVTDQESF-NNVKQWLQEIDRYAS-------------------- 136 (199)
T ss_dssp EEEECCTTCTTCCCCSCC----CC----CSEEEECC-CCCSHHH-HHHHHHHHHHHSCC---------------------
T ss_pred EEEEECCCcHhHHHHHHH--Hhhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcc--------------------
Confidence 589999998766665554 2222 2378999999999987 888888876632100
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
-++|+|||+||+|+...-.. -...++.+|..+|+..|.+|++.
T Consensus 137 --------------------------------~~~p~ilv~nK~Dl~~~~~v-----~~~~~~~~~~~~~~~~~~vSA~~ 179 (199)
T 3l0i_B 137 --------------------------------ENVNKLLVGNKCDLTTKKVV-----DYTTAKEFADSLGIPFLETSAKN 179 (199)
T ss_dssp --------------------------------CCSEEEEC-CCSSCC--CCC-----CSCC-CHHHHTTTCCBCCCCC--
T ss_pred --------------------------------CCCCEEEEEECccCCccccC-----CHHHHHHHHHHcCCeEEEEECCC
Confidence 14799999999998632110 01235678889999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q psy11649 553 PGLVKRTRDILNHYAF 568 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~f 568 (890)
+.|++.++..|...+.
T Consensus 180 g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 180 ATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -HHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 284
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.40 E-value=5.2e-07 Score=88.08 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=80.1
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|.... .+ +.. .-++|+|+|++.|.++ +.++.|+..++.....
T Consensus 56 l~i~Dt~G~~~~----~~---~~~----~d~~ilv~D~~~~~s~-~~~~~~~~~i~~~~~~------------------- 104 (178)
T 2iwr_A 56 VLIREEAGAPDA----KF---SGW----ADAVIFVFSLEDENSF-QAVSRLHGQLSSLRGE------------------- 104 (178)
T ss_dssp EEEEECSSSCCH----HH---HHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCS-------------------
T ss_pred EEEEECCCCchh----HH---HHh----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHHhc-------------------
Confidence 589999998541 12 221 2378999999999988 8899998877663321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K 551 (890)
. .-++|+||||||+|+...-+ ...-...++.+|..+ |+..|.||+|
T Consensus 105 ---------~---------------------~~~~piilv~nK~Dl~~~~~---~~v~~~~~~~~~~~~~~~~~~~~Sa~ 151 (178)
T 2iwr_A 105 ---------G---------------------RGGLALALVGTQDRISASSP---RVVGDARARALXADMKRCSYYETXAT 151 (178)
T ss_dssp ---------S---------------------SCCCEEEEEEECTTCBTTBC---CCSCHHHHHHHHHHHSSEEEEEEBTT
T ss_pred ---------C---------------------CCCCCEEEEEECcccccccc---CcCCHHHHHHHHHhhcCCeEEEEecc
Confidence 0 01489999999999852111 111123345667666 6889999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...++.
T Consensus 152 ~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 152 YGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999887764
No 285
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.38 E-value=2.7e-06 Score=95.92 Aligned_cols=105 Identities=11% Similarity=-0.004 Sum_probs=65.8
Q ss_pred CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccC---------------------CCCHHHHHH
Q psy11649 174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLD---------------------PGLVKRTRD 230 (890)
Q Consensus 174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~---------------------~~nId~Lk~ 230 (890)
...|++.++|+.|.- +.. ...-....+++++...+ +.++.+||+. +.|++++.+
T Consensus 223 t~kp~~y~~Nv~e~~--~~~-~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~ 299 (392)
T 1ni3_A 223 TAKPVIYLVNMSERD--FLR-QKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIV 299 (392)
T ss_dssp GGSCEEEEEECCHHH--HTT-TCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHH
T ss_pred ccCceEEEEEecchh--hcc-cchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHH
Confidence 458999999999841 000 00112345778887776 8899999986 577888766
Q ss_pred HHHHHHhccCcccccccCCCCcccccCCCccccccccCCCCCCCCccccccccccccchhHHHhhcc
Q psy11649 231 ILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGW 297 (890)
Q Consensus 231 ~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl~r~~~~~~~~~~~~~~~~~~~f~~~~~w 297 (890)
...+++ +... +-+.|.+.. ..=+++++++-.+.+..+|.++...|-++.++
T Consensus 300 ~~~~~L-~l~~------------~ft~g~~e~---rawti~~G~~a~~aag~IH~d~~~gfi~ae~~ 350 (392)
T 1ni3_A 300 TGYNAL-NLIN------------YFTCGEDEV---RSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIM 350 (392)
T ss_dssp HHHHHT-TEEE------------EEECCSSEE---EEEEEETTCBHHHHHHHHCHHHHHTCSEEEEE
T ss_pred HHHHHh-CCEE------------EECCCCCcc---eeEEeCCCCcHHHHccccchhhhhccEEEEEC
Confidence 666554 1111 112333321 11115567777778888899998888777765
No 286
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.37 E-value=4.7e-07 Score=89.79 Aligned_cols=119 Identities=13% Similarity=0.233 Sum_probs=84.6
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..++|+..|...+..+... .+. ...++++|+|+|.+.+-++.++.|+..++.+.
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-------------------- 110 (184)
T 2zej_A 57 VLNVWDFAGREEFYSTHPH--FMT----QRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-------------------- 110 (184)
T ss_dssp EEEEEEECSHHHHHTTSHH--HHH----HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--------------------
T ss_pred EEEEEecCCCHHHHHhhHH--Hcc----CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--------------------
Confidence 4689999998665554443 122 13467889999999533388888987665410
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc----eeE
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS----LLF 547 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs----L~f 547 (890)
-++|+||||||+|+... .+..+.+......+|.++|+. .+.
T Consensus 111 ---------------------------------~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
T 2zej_A 111 ---------------------------------SSSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRGFPAIRDYHF 155 (184)
T ss_dssp ---------------------------------TTCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred ---------------------------------CCCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence 03789999999998631 111123455567788889987 899
Q ss_pred eccCChh-hHHHHHHHHhhhhcCCC
Q psy11649 548 HSSLDPG-LVKRTRDILNHYAFSSH 571 (890)
Q Consensus 548 tS~K~~~-n~~~l~kyi~hr~fg~~ 571 (890)
||+|.+. +++.|++.|...+..++
T Consensus 156 ~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 156 VNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred EecccCchhHHHHHHHHHHHHhccc
Confidence 9999996 99999999998887654
No 287
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.37 E-value=6.7e-07 Score=88.46 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=79.1
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
--+.+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.+..|+..+..+..
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------ 114 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNT--YYTN----TEFVIVVVDSTDRERI-SVTREELYKMLAHED------------------ 114 (187)
T ss_dssp EEEEEEECCC----CGGGHH--HHTT----CCEEEEEEETTCTTTH-HHHHHHHHHHHTSGG------------------
T ss_pred EEEEEEECCCCHhHHHHHHH--HhcC----CCEEEEEEeCCCHHHH-HHHHHHHHHHHhchh------------------
Confidence 34589999999766665443 2221 2379999999999887 667777655443111
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ftS 549 (890)
..++|+|||+||+|+....+.+ .+.+.+..- +...|...+.||
T Consensus 115 ---------------------------------~~~~piilv~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~S 158 (187)
T 1zj6_A 115 ---------------------------------LRKAGLLIFANKQDVKECMTVA---EISQFLKLTSIKDHQWHIQACC 158 (187)
T ss_dssp ---------------------------------GTTCEEEEEEECTTSTTCCCHH---HHHHHHTGGGCCSSCEEEEECB
T ss_pred ---------------------------------hCCCeEEEEEECCCCcCCCCHH---HHHHHhChhhhcCCCcEEEEcc
Confidence 1147999999999998544332 233332211 224677899999
Q ss_pred cCChhhHHHHHHHHhhhhcCCCCC
Q psy11649 550 SLDPGLVKRTRDILNHYAFSSHLA 573 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~fg~~~~ 573 (890)
++.+.|++.+++.|...+...+.+
T Consensus 159 a~~g~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 159 ALTGEGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp TTTTBTHHHHHHHHHHHHCC----
T ss_pred CCCCcCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999988765443
No 288
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.37 E-value=4.9e-07 Score=90.04 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=80.3
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.++|+..|...+. + +.. .-++++|+|++.+.++ +.++.|+..++.+..
T Consensus 69 l~i~Dt~G~~~~~----~---~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------- 116 (184)
T 3ihw_A 69 LLIRDEGGPPELQ----F---AAW----VDAVVFVFSLEDEISF-QTVYNYFLRLCSFRN-------------------- 116 (184)
T ss_dssp EEEEECSSSCCHH----H---HHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHTTSC--------------------
T ss_pred EEEEECCCChhhh----e---ecC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 4789999985544 2 111 2379999999999988 888889877654211
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL 551 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K 551 (890)
..++|+||||||+|+...- ....-...++.+|..+| +..|.||+|
T Consensus 117 -------------------------------~~~~piilv~nK~Dl~~~~---~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 162 (184)
T 3ihw_A 117 -------------------------------ASEVPMVLVGTQDAISAAN---PRVIDDSRARKLSTDLKRCTYYETCAT 162 (184)
T ss_dssp -------------------------------GGGSCEEEEEECTTCBTTB---CCCSCHHHHHHHHHHTTTCEEEEEBTT
T ss_pred -------------------------------CCCCCEEEEEECccccccc---ccccCHHHHHHHHHHcCCCeEEEecCC
Confidence 0137999999999985211 11122345677888998 889999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.++..|...+.
T Consensus 163 ~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 163 YGLNVERVFQDVAQKVV 179 (184)
T ss_dssp TTBTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987765
No 289
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.37 E-value=3.4e-07 Score=109.43 Aligned_cols=109 Identities=13% Similarity=0.025 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC------C--CCCC------------CccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKN------D--TPKP------------TLALEYIYARKSGKTVMKDICHLWELGSGTS 95 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~------~--~~kp------------tigvdY~f~~~~g~~~~k~~l~IwDlpG~~~ 95 (890)
.+|+|+|...+|||||..+|+... + .... ++++.-. .......+.+++|+||||+..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~---~~~~~~~~~~iNlIDTPGH~D 79 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTG---ITSFQWENTKVNIIDTPGHMD 79 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCC---CCCCBCSSCBCCCEECCCSSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEee---eEEEEECCEEEEEEECCCcHH
Confidence 468999999999999999996410 0 0000 1121100 000111233799999999998
Q ss_pred hhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649 96 RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174 (890)
Q Consensus 96 ~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l 174 (890)
|..-+... +- +|++|+|+|...--.- .....|.+.. + .
T Consensus 80 F~~Ev~raL~~-------~DgavlVVDa~~GV~~-qT~~v~~~a~-~--------------------------------~ 118 (638)
T 3j25_A 80 FLAEVYRSLSV-------LDGAILLISAKDGVQA-QTRILFHALR-K--------------------------------M 118 (638)
T ss_dssp THHHHHHHHTT-------CSEEECCEESSCTTCS-HHHHHHHHHH-H--------------------------------H
T ss_pred HHHHHHHHHHH-------hCEEEEEEeCCCCCcH-HHHHHHHHHH-H--------------------------------c
Confidence 86555444 43 8999999999984433 2334444321 1 1
Q ss_pred CCcEEEEeecccCC
Q psy11649 175 PVPLILIGGKYDLF 188 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~ 188 (890)
++|.+++.||+|..
T Consensus 119 ~lp~i~~INKmDr~ 132 (638)
T 3j25_A 119 GIPTIFFINKIDQN 132 (638)
T ss_dssp TCSCEECCEECCSS
T ss_pred CCCeEEEEeccccc
Confidence 68999999999974
No 290
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.36 E-value=1.1e-06 Score=84.64 Aligned_cols=117 Identities=13% Similarity=0.055 Sum_probs=80.9
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
--+.+|+..|...+..+... .+. ..-++++|+|.+.|.++ +.+..|+..+..+..
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------ 105 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRC--YYS----NTDAVIYVVDSCDRDRI-GISKSELVAMLEEEE------------------ 105 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGG--GCT----TCSEEEEEEETTCCTTH-HHHHHHHHHHHTCGG------------------
T ss_pred EEEEEEECCCChhhhHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHhchh------------------
Confidence 34689999999776665544 232 22379999999999887 555555543321000
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS 549 (890)
..++|++||+||+|+....+. +.+.+.+ ..++...|...+.||
T Consensus 106 ---------------------------------~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S 149 (171)
T 1upt_A 106 ---------------------------------LRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTS 149 (171)
T ss_dssp ---------------------------------GTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECC
T ss_pred ---------------------------------hCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCceEEEECc
Confidence 014899999999999865432 2233333 234556778899999
Q ss_pred cCChhhHHHHHHHHhhhhc
Q psy11649 550 SLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~f 568 (890)
++.+.|++.++.+|...+.
T Consensus 150 a~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 291
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.35 E-value=5.6e-07 Score=86.33 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=77.7
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
--+++|+..|...+..+... .+.. .-++++|+|++.|.++ +.+..|+..+.....
T Consensus 44 ~~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------ 98 (164)
T 1r8s_A 44 ISFTVWDVGGQDKIRPLWRH--YFQN----TQGLIFVVDSNDRERV-NEAREELMRMLAEDE------------------ 98 (164)
T ss_dssp CEEEEEECCCCGGGHHHHHH--HTTT----CSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG------------------
T ss_pred EEEEEEEcCCChhhHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhchh------------------
Confidence 34689999999776665544 2222 2378999999999887 666666654432100
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS 549 (890)
..++|+|||+||+|+....+. +.+.+.+ ..++...+...+.||
T Consensus 99 ---------------------------------~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S 142 (164)
T 1r8s_A 99 ---------------------------------LRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATC 142 (164)
T ss_dssp ---------------------------------GTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECB
T ss_pred ---------------------------------hcCCeEEEEEECcCCcCCCCH---HHHHHHhCcccccCccEEEEEcc
Confidence 014799999999999754332 2222222 122333556789999
Q ss_pred cCChhhHHHHHHHHhhhhc
Q psy11649 550 SLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~f 568 (890)
+|.+.|++.++.+|...+.
T Consensus 143 a~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 143 ATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TTTTBTHHHHHHHHHHHC-
T ss_pred cCCCcCHHHHHHHHHHHHh
Confidence 9999999999999987763
No 292
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.33 E-value=9.5e-07 Score=87.04 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=77.7
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
--..+|+..|...+..+... .+.. .-++++|+|.+.+.++ +.+..|+..+..+..
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~~------------------ 119 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNT--YYTN----TEFVIVVVDSTDRERI-SVTREELYKMLAHED------------------ 119 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGG--GGTT----CCEEEEEEETTCTTTH-HHHHHHHHHHHTCGG------------------
T ss_pred EEEEEEECCCCHhHHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhChh------------------
Confidence 34589999999776665544 2322 2379999999999887 666666644332100
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS 549 (890)
..++|+|||+||+|+....+.++ +.+.+. ..+...|...|.||
T Consensus 120 ---------------------------------~~~~piilv~NK~Dl~~~~~~~~---i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 120 ---------------------------------LRKAGLLIFANKQDVKECMTVAE---ISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp ---------------------------------GTTCEEEEEEECTTSTTCCCHHH---HHHHTTGGGCCSSCEEEEECB
T ss_pred ---------------------------------hCCCeEEEEEECCCcccCCCHHH---HHHHhCcccccCCceEEEEcc
Confidence 12489999999999976444332 222221 11233567899999
Q ss_pred cCChhhHHHHHHHHhhh
Q psy11649 550 SLDPGLVKRTRDILNHY 566 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr 566 (890)
+|.+.|++.++..|..+
T Consensus 164 a~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999998764
No 293
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.33 E-value=1.5e-06 Score=86.11 Aligned_cols=119 Identities=11% Similarity=0.087 Sum_probs=80.4
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
--+.+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.+..|+..+..+...
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~----------------- 122 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEH--YYKE----GQAIIFVIDSSDRLRM-VVAKEELDTLLNHPDI----------------- 122 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGG--GGGG----CSEEEEEEETTCHHHH-HHHHHHHHHHHHSTTT-----------------
T ss_pred EEEEEEECCCCHHHHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhChhh-----------------
Confidence 35689999998777766554 2322 2378999999999877 6666676555431110
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHH-HHHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~-fcl~yGAsL~ftS 549 (890)
.+.++|+|||+||+|+....+.+ .+.+.+.. -....|...+.||
T Consensus 123 --------------------------------~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 123 --------------------------------KHRRIPILFFANKMDLRDAVTSV---KVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp --------------------------------TTSCCCEEEEEECTTSTTCCCHH---HHHHHHTGGGCCSSCEEEEECB
T ss_pred --------------------------------ccCCCeEEEEEeCcCcccCCCHH---HHHHHhChhhccCCceEEEEcc
Confidence 01258999999999998544332 23332220 0012477899999
Q ss_pred cCChhhHHHHHHHHhhhhc
Q psy11649 550 SLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~f 568 (890)
++.+.|++.++++|...+-
T Consensus 168 a~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999987763
No 294
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=6e-07 Score=89.11 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=84.8
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+.. .-++++|+|++.|.++ +.+..|+..+.+....
T Consensus 58 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------- 111 (199)
T 2gf0_A 58 LQITDTTGSHQFPAMQRL--SISK----GHAFILVFSVTSKQSL-EELGPIYKLIVQIKGS------------------- 111 (199)
T ss_dssp EEEEECCGGGSCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTTHHHHHHHHHHHSC-------------------
T ss_pred EEEEeCCChHHhHHHHHH--hhcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHhcC-------------------
Confidence 579999998666655444 2222 2378999999999987 8888888777654321
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
..++|+|||+||+|+...- .....++.+|..+|+..|.+|++.
T Consensus 112 -------------------------------~~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (199)
T 2gf0_A 112 -------------------------------VEDIPVMLVGNKCDETQRE------VDTREAQAVAQEWKCAFMETSAKM 154 (199)
T ss_dssp -------------------------------GGGSCEEEEEECTTCSSCS------SCHHHHHHHHHHHTCEEEECBTTT
T ss_pred -------------------------------CCCCCEEEEEECccCCccc------cCHHHHHHHHHHhCCeEEEEecCC
Confidence 0137899999999997421 112345567888999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.++..|...+..
T Consensus 155 ~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 155 NYNVKELFQELLTLETR 171 (199)
T ss_dssp TBSHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987764
No 295
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.31 E-value=9.3e-06 Score=98.14 Aligned_cols=115 Identities=11% Similarity=-0.036 Sum_probs=71.9
Q ss_pred ccceEEEEEcCCCCCHHHHHHHHHcC------CC--------------CCCCCccceeEEEEEE--ec--cccceEEEEE
Q psy11649 33 SQERTLLLIGTKSVGKSTLVFRFLEK------ND--------------TPKPTLALEYIYARKS--GK--TVMKDICHLW 88 (890)
Q Consensus 33 ~~e~kIvLVGd~nvGKSSLInrL~~~------~~--------------~~kptigvdY~f~~~~--g~--~~~k~~l~Iw 88 (890)
.+-.+|+|||.-.+|||||..+|+.. .+ ...-++++.-...... +. ...+..++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 34678999999999999999999731 00 0111122111111111 11 0113489999
Q ss_pred EcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccc
Q psy11649 89 ELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRD 167 (890)
Q Consensus 89 DlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d 167 (890)
||||+..|..-+... +- +|++|+|+|...--.. .....|.+..++
T Consensus 91 DTPGHvDF~~Ev~~aLr~-------~DgavlvVDaveGV~~-qT~~v~~~a~~~-------------------------- 136 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRV-------LDGAVVVFCGTSGVEP-QSETVWRQANKY-------------------------- 136 (709)
T ss_dssp CCCSCTTCHHHHHHHHHH-------CSEEEEEEETTTCSCH-HHHHHHHHHHHH--------------------------
T ss_pred eCCCCcccHHHHHHHHHH-------hCeEEEEEECCCCCch-hHHHHHHHHHHc--------------------------
Confidence 999998886555544 54 8999999999985543 333444442222
Q ss_pred cccccCCCCcEEEEeecccCC
Q psy11649 168 KGLIRTFPVPLILIGGKYDLF 188 (890)
Q Consensus 168 ~~li~~l~IPiIVVgNK~Dl~ 188 (890)
++|.++++||+|..
T Consensus 137 -------~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 137 -------GVPRIVYVNKMDRQ 150 (709)
T ss_dssp -------TCCEEEEEECSSST
T ss_pred -------CCCeEEEEcccccc
Confidence 69999999999974
No 296
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.31 E-value=2e-06 Score=86.49 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=81.3
Q ss_pred eEEEEeCCCccccc-ccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~-Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+..|...+.. +.+. .+. ..-++|+|+|++.+.++ +.++.|+..++.+..
T Consensus 74 l~i~Dt~g~~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~------------------- 127 (195)
T 3cbq_A 74 LVVYDIWEQGDAGGWLRDH--CLQ----TGDAFLIVFSVTDRRSF-SKVPETLLRLRAGRP------------------- 127 (195)
T ss_dssp EEEECCCCCSGGGHHHHHH--HHH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHST-------------------
T ss_pred EEEEecCCCccchhhhHHH--hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 47899999865443 2222 111 12378999999999987 888889876654211
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
..++|+||||||+|+...-.- -...++.+|..+|+..+.||+|
T Consensus 128 --------------------------------~~~~piilv~nK~Dl~~~~~v-----~~~~~~~~a~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 128 --------------------------------HHDLPVILVGNKSDLARSREV-----SLEEGRHLAGTLSCKHIETSAA 170 (195)
T ss_dssp --------------------------------TSCCCEEEEEECTTCTTTCCS-----CHHHHHHHHHHTTCEEEEEBTT
T ss_pred --------------------------------CCCCCEEEEeechhccccCCc-----CHHHHHHHHHHhCCEEEEEcCC
Confidence 014899999999999742110 1123456788889999999999
Q ss_pred ChhhHHHHHHHHhhhhcC
Q psy11649 552 DPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg 569 (890)
.+.|++.++..|...+..
T Consensus 171 ~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTBSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887753
No 297
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.26 E-value=9.4e-07 Score=87.77 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=77.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+.. .-++|+|+|.+.+.++ +.+..|+..+..+..
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~~------------------- 121 (188)
T 1zd9_A 68 TIKLWDIGGQPRFRSMWER--YCRG----VSAIVYMVDAADQEKI-EASKNELHNLLDKPQ------------------- 121 (188)
T ss_dssp EEEEEEECCSHHHHTTHHH--HHTT----CSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred EEEEEECCCCHhHHHHHHH--HHcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhCcc-------------------
Confidence 4589999998666555444 2221 2378999999999887 666666644322100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~ 550 (890)
..++|+|||+||+|+....+.++ +...+ ..++...+...|.||+
T Consensus 122 --------------------------------~~~~piilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~SA 166 (188)
T 1zd9_A 122 --------------------------------LQGIPVLVLGNKRDLPGALDEKE---LIEKMNLSAIQDREICCYSISC 166 (188)
T ss_dssp --------------------------------GTTCCEEEEEECTTSTTCCCHHH---HHHHTTGGGCCSSCEEEEECCT
T ss_pred --------------------------------cCCCCEEEEEECCCCccCCCHHH---HHHHhChhhhccCCeeEEEEEC
Confidence 12489999999999986543322 22211 1222345678899999
Q ss_pred CChhhHHHHHHHHhhhhc
Q psy11649 551 LDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~f 568 (890)
+.+.|++.++.+|...+.
T Consensus 167 ~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 167 KEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TTCTTHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987664
No 298
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.24 E-value=2.1e-06 Score=92.49 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=84.2
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
..+|+..|...+..+... .+. ..-++++|+|.+.+.++-+..+.|+..++.+..
T Consensus 205 ~~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------------- 258 (332)
T 2wkq_A 205 LGLWDTAGLEDYDRLRPL--SYP----QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-------------------- 258 (332)
T ss_dssp EEEEEECCCGGGTTTGGG--GCT----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--------------------
T ss_pred EEEEeCCCchhhhHHHHH--hcc----CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC--------------------
Confidence 469999998666655444 222 123789999999999883333478776654110
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC-c
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA-S 544 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA-s 544 (890)
++|+||||||+|+....+... ...-.+.++.+|..+|+ .
T Consensus 259 ---------------------------------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 305 (332)
T 2wkq_A 259 ---------------------------------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 305 (332)
T ss_dssp ---------------------------------TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred ---------------------------------CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcE
Confidence 378999999999964311100 01124567789999998 8
Q ss_pred eeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 545 LLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 545 L~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
.|.||+|.+.|++.++..|...++.
T Consensus 306 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 306 YLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999887764
No 299
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.24 E-value=2e-06 Score=85.06 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=78.9
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
--..+|+..|...+..+... .+. ..-++++|+|.+.|.++ +.+..|+..+....
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~------------------- 119 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRC--YFS----DTDAVIYVVDSTDRDRM-GVAKHELYALLDED------------------- 119 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSS--SST----TCCEEEEEEETTCCTTH-HHHHHHHHHHHTCS-------------------
T ss_pred EEEEEEECCCCHhHHHHHHH--Hhh----cCCEEEEEEeCCCHHHH-HHHHHHHHHHHhhh-------------------
Confidence 34589999999776665544 222 22378999999999887 55555554332100
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS 549 (890)
...++|+|||+||+|+....+. +.+.+.+. .++...+...+.||
T Consensus 120 --------------------------------~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 120 --------------------------------ELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp --------------------------------TTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECC
T ss_pred --------------------------------hcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCceEEEEcc
Confidence 0014799999999999754332 22222222 23445567899999
Q ss_pred cCChhhHHHHHHHHhhhhc
Q psy11649 550 SLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~f 568 (890)
++.+.|++.++..|...+.
T Consensus 165 a~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 300
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.24 E-value=1.1e-06 Score=87.84 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=73.9
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-+.+|+..|...+..+... .+. ..-++++|+|.+.|.++ +.+..|+..+.....
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~--~~~----~~d~iilv~D~~~~~s~-~~~~~~l~~~~~~~~------------------- 127 (192)
T 2b6h_A 74 CFTVWDVGGQDKIRPLWRH--YFQ----NTQGLIFVVDSNDRERV-QESADELQKMLQEDE------------------- 127 (192)
T ss_dssp EEEEEECC-----CTTHHH--HHH----TCCEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred EEEEEECCCCHhHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHhcccc-------------------
Confidence 4689999999766655443 222 12378999999999887 666666654322100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~ 550 (890)
..++|+|||+||+|+....+. +.+.+.+ ..++...+...+.||+
T Consensus 128 --------------------------------~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA 172 (192)
T 2b6h_A 128 --------------------------------LRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTWYVQATCA 172 (192)
T ss_dssp --------------------------------GTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBT
T ss_pred --------------------------------cCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEECcC
Confidence 014799999999999754331 2222221 1223345667899999
Q ss_pred CChhhHHHHHHHHhhhhc
Q psy11649 551 LDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~f 568 (890)
+.+.|++.++.+|...+.
T Consensus 173 ~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTTBTHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 301
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.23 E-value=1.8e-06 Score=84.94 Aligned_cols=117 Identities=14% Similarity=0.040 Sum_probs=79.5
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
--..+|+..|...+..+... .+.. .-++++|+|.+.|.++ +.+..|+..+..+..
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------ 116 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRN--YFES----TDGLIWVVDSADRQRM-QDCQRELQSLLVEER------------------ 116 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGG--GCTT----CSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG------------------
T ss_pred EEEEEEECCCCHhHHHHHHH--HhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHhChh------------------
Confidence 34589999999666655444 2221 2379999999999987 777777654432100
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS 549 (890)
..++|+|||+||+|+....+. +.+.+.+. ..+...+...+.||
T Consensus 117 ---------------------------------~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 117 ---------------------------------LAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp ---------------------------------GTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECC
T ss_pred ---------------------------------cCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCceEEEEee
Confidence 014799999999999764332 22322221 11224577899999
Q ss_pred cCChhhHHHHHHHHhhhhc
Q psy11649 550 SLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~f 568 (890)
+|.+.|++.+++.|...+-
T Consensus 161 a~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 302
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.20 E-value=9.3e-06 Score=88.18 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=84.3
Q ss_pred eeEEEEeCCCccc-----ccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccc
Q psy11649 392 ICHLWELGSGTSR-----LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH 466 (890)
Q Consensus 392 i~~vW~L~G~~~~-----~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~ 466 (890)
-.+||+++|+..+ ..+... .+. ..-++|+|+|.+.+.++ +.++.|.+.+.+....
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~--~~~----~ad~vi~V~D~t~~~s~-~~l~~~~~~l~~l~~~------------- 112 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDH--IFQ----MVQVLIHVFDVESTEVL-KDIEIFAKALKQLRKY------------- 112 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHH--HHT----TCSEEEEEEETTCSCHH-HHHHHHHHHHHHHHHH-------------
T ss_pred EEEEEECCCcHHHhhhhhhhHHHH--Hhc----cCCEEEEEEECCChhhH-HHHHHHHHHHHHHHHh-------------
Confidence 4689999998554 222222 111 23379999999999987 8888888877664331
Q ss_pred cccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHH----HHHHHHHHHHHHcC
Q psy11649 467 FRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKR----IAVQCLRYLAHVNG 542 (890)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d----~Iq~~lR~fcl~yG 542 (890)
.-++|++|||||+|+.. ++++. .....++.+|..+|
T Consensus 113 -------------------------------------~~~~piilv~NK~Dl~~---~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 113 -------------------------------------SPDAKIFVLLHKMDLVQ---LDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp -------------------------------------CTTCEEEEEEECGGGSC---HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------------------------------------CCCCeEEEEEecccccc---hhhhhHHHHHHHHHHHHHHHHcC
Confidence 01489999999999973 33443 67788999999999
Q ss_pred ---CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 543 ---ASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 543 ---AsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
...+.||++. .++..++.-+...+.
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 6889999999 777777777776654
No 303
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.20 E-value=2.7e-06 Score=84.95 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=77.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+..|...+..+... .+. ..-++++|+|.+.+.++ +.+..|+..+..+..
T Consensus 68 ~~~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 121 (190)
T 1m2o_B 68 KFTTFDLGGHIQARRLWKD--YFP----EVNGIVFLVDAADPERF-DEARVELDALFNIAE------------------- 121 (190)
T ss_dssp EEEEEECCCSGGGTTSGGG--GCT----TCCEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred EEEEEECCCCHHHHHHHHH--HHh----cCCEEEEEEECCChHHH-HHHHHHHHHHHcchh-------------------
Confidence 3589999999776655444 222 22379999999999987 777777755432100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH--------HHHcCC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL--------AHVNGA 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f--------cl~yGA 543 (890)
..++|+|||+||+|+....+.+ .+++.+... +...+.
T Consensus 122 --------------------------------~~~~piilv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T 1m2o_B 122 --------------------------------LKDVPFVILGNKIDAPNAVSEA---ELRSALGLLNTTGSQRIEGQRPV 166 (190)
T ss_dssp --------------------------------GTTCCEEEEEECTTSTTCCCHH---HHHHHTTCSSCCC---CCSSCCE
T ss_pred --------------------------------hcCCCEEEEEECCCCcCCCCHH---HHHHHhCCccccccccccccceE
Confidence 0147999999999997643332 233332211 223567
Q ss_pred ceeEeccCChhhHHHHHHHHhhh
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr 566 (890)
..+.||+|.+.|++.++.+|..+
T Consensus 167 ~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 167 EVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEeECCcCCCHHHHHHHHHhh
Confidence 78999999999999999998764
No 304
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.50 E-value=2e-07 Score=93.82 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=81.6
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+..|...+..+... .+. ..-++++|+|++.|.++ +.+. .|+..++.+..
T Consensus 80 l~i~Dt~G~~~~~~~~~~--~~~----~~d~iilv~D~~~~~s~-~~~~~~~~~~l~~~~~------------------- 133 (204)
T 3th5_A 80 LGLWDTAGQEDYDRLRPL--SYP----QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHCP------------------- 133 (204)
Confidence 469999998666555444 222 12378999999999988 4443 77655543110
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC-
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA- 543 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA- 543 (890)
++|+|||+||+|+...-+... ...-...++.+|..+|+
T Consensus 134 ----------------------------------~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 3th5_A 134 ----------------------------------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
Confidence 378999999999974321111 12334667889999998
Q ss_pred ceeEeccCChhhHHHHHHHHhhhh
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
..|.||+|.+.|++.++.+|...+
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 899999999999999999987665
No 305
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.19 E-value=6.6e-06 Score=82.75 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=74.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-.++|+.+|...+..+... .+.. .-++++|+|.+.+.++ +.+..|+..+..+..
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~D~~~~~s~-~~~~~~~~~~~~~~~------------------- 123 (198)
T 1f6b_A 70 TFTTFDLGGHIQARRVWKN--YLPA----INGIVFLVDCADHERL-LESKEELDSLMTDET------------------- 123 (198)
T ss_dssp EEEEEEECC----CCGGGG--GGGG----CSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred EEEEEECCCcHhhHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhCcc-------------------
Confidence 3489999998766665443 2221 2379999999999987 677777654432100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHH---------H---
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA---------H--- 539 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc---------l--- 539 (890)
..++|+||||||+|+....+.| .+++.+.... +
T Consensus 124 --------------------------------~~~~piilv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 124 --------------------------------IANVPILILGNKIDRPEAISEE---RLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp --------------------------------GTTSCEEEEEECTTSTTCCCHH---HHHHHHTCTTTCCCSSCCCTTTC
T ss_pred --------------------------------cCCCcEEEEEECCCccccCCHH---HHHHHhCcccccccccccccccc
Confidence 0148999999999997543332 2333332211 0
Q ss_pred -HcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 540 -VNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 540 -~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
..++..+.||+|.+.|++.++.+|...+
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1456789999999999999999987643
No 306
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.16 E-value=9.9e-06 Score=85.39 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=68.4
Q ss_pred ceEEEEEEeCCCc--hhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccc
Q psy11649 421 GFTLVLMLDLSRL--NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFED 498 (890)
Q Consensus 421 ~~~viivlDlS~P--w~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 498 (890)
.-++|+|+|+++| .++ +.++.|+..+..+...
T Consensus 163 ad~vilV~D~t~~~~~s~-~~~~~~l~~i~~~~~~--------------------------------------------- 196 (255)
T 3c5h_A 163 VDGFLLGIDVSRGMNRNF-DDQLKFVSNLYNQLAK--------------------------------------------- 196 (255)
T ss_dssp CCEEEEEEECBC----CH-HHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCEEEEEEECCCCchhhH-HHHHHHHHHHHHHhcc---------------------------------------------
Confidence 4589999999999 887 8899999888765431
Q ss_pred ccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHH-cCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 499 KGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 499 ~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~-yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
-++|+||||||+|+.. + ..+ ..++.+|.. .|+..|.||+|.+.|++.++..|...+
T Consensus 197 ------~~~piilV~NK~Dl~~---~---~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 197 ------TKKPIVVVLTKCDEGV---E---RYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ------TTCCEEEEEECGGGBC---H---HHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------CCCCEEEEEEcccccc---c---HHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 0379999999999852 1 112 467788887 489999999999999999999988764
No 307
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=4.9e-06 Score=85.64 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=76.9
Q ss_pred EEEEeCCCcccccccccccccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 394 HLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 394 ~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
.+|++.|.......+ ..... ..-++|+|+|++.+.++ +.++.|...+++...
T Consensus 90 ~~~Dt~g~~~~~~~l------~~~~~~~a~~~ilVydvt~~~sf-~~~~~~~~~l~~~~~-------------------- 142 (211)
T 2g3y_A 90 ILLDMWENKGENEWL------HDHCMQVGDAYLIVYSITDRASF-EKASELRIQLRRARQ-------------------- 142 (211)
T ss_dssp EEECCTTTTHHHHHH------HHCCCCCCSEEEEEEETTCHHHH-HHHHHHHHHHHTSGG--------------------
T ss_pred EEeecCCCcchhhhH------HHHHHhhCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC--------------------
Confidence 679888774421111 11111 12378999999999988 788888765532100
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC--CChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN--LEPNKKRIAVQCLRYLAHVNGASLLFHSS 550 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~--~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~ 550 (890)
.-++|+||||+|+|+... ... ...+.+|..+|+..|.||+
T Consensus 143 -------------------------------~~~~piilVgNK~DL~~~r~v~~-------~e~~~~a~~~~~~~~e~SA 184 (211)
T 2g3y_A 143 -------------------------------TEDIPIILVGNKSDLVRCREVSV-------SEGRACAVVFDCKFIETSA 184 (211)
T ss_dssp -------------------------------GTTSCEEEEEECTTCGGGCCSCH-------HHHHHHHHHHTCEEEECBT
T ss_pred -------------------------------CCCCcEEEEEEChHHhcCceEeH-------HHHHHHHHHcCCEEEEEeC
Confidence 014899999999999642 221 2345678889999999999
Q ss_pred CChhhHHHHHHHHhhhhc
Q psy11649 551 LDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~f 568 (890)
|.+.|++.++..|...+.
T Consensus 185 k~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 185 AVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987663
No 308
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.08 E-value=4e-06 Score=81.94 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=73.5
Q ss_pred ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
.-+.+|+..|...+..+... .+. ..-++++|+|.+.+.++ +.+..|+..+..+.
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~------------------- 115 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRC--YYA----DTAAVIFVVDSTDKDRM-STASKELHLMLQEE------------------- 115 (183)
T ss_dssp EEEEEEEEC----CCTTGGG--TTT----TEEEEEEEEETTCTTTH-HHHHHHHHHHTTSS-------------------
T ss_pred EEEEEEECCCCHhHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHcCh-------------------
Confidence 34589999998766555443 222 23479999999999887 66666654332100
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ftS 549 (890)
...++|+|||+||+|+....+.+ .+.+.+... +...+...+.||
T Consensus 116 --------------------------------~~~~~piilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 116 --------------------------------ELQDAALLVFANKQDQPGALSAS---EVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp --------------------------------TTSSCEEEEEEECTTSTTCCCHH---HHHHHTTTTTCCSSCEEEEEEB
T ss_pred --------------------------------hhCCCeEEEEEECCCCCCCCCHH---HHHHHhCcccccCCceEEEEcc
Confidence 01248999999999997543322 222222111 122455789999
Q ss_pred cCChhhHHHHHHHHhhhhc
Q psy11649 550 SLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~f 568 (890)
++.+.|++.++.+|...+.
T Consensus 161 a~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999987653
No 309
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.05 E-value=1.9e-06 Score=96.32 Aligned_cols=145 Identities=14% Similarity=0.042 Sum_probs=84.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC-----C-C--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh---
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK-----N-D--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF--- 103 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~-----~-~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~--- 103 (890)
..+|+++|.+|||||||+|+|++. . . ...|+++.+. ....... .+.++||||......+....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~----~~~~~~~--~~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM----IEIPLES--GATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE----EEEECST--TCEEEECCSCCCCSSGGGGSCTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee----EEEEeCC--CeEEEeCCCcCcHHHHHHHHhHH
Confidence 457999999999999999999984 1 1 2234444442 1111111 37999999975432222111
Q ss_pred -hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649 104 -SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG 182 (890)
Q Consensus 104 -r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg 182 (890)
....+.....+.+++++|..+.--+ ..+.. ...+...++|++++.
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~~~~-g~l~~---------------------------------l~~l~~~~~~~~~v~ 281 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQTLFF-GGLAR---------------------------------LDYIKGGRRSFVCYM 281 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEEEEE-TTTEE---------------------------------EEEEESSSEEEEEEE
T ss_pred HHHHHhcccccCceEEEEcCCceEEE-CCEEE---------------------------------EEEccCCCceEEEEe
Confidence 0000000136788888876322111 00000 011333468999999
Q ss_pred ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCH
Q psy11649 183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLV 225 (890)
Q Consensus 183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nI 225 (890)
||+|.. ++.........+.+..|..+...++++..++
T Consensus 282 ~k~d~~------~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 282 ANELTV------HRTKLEKADSLYANQLGELLSPPSKRYAAEF 318 (369)
T ss_dssp CTTSCE------EEEEGGGHHHHHHHHBTTTBCSSCGGGTTTC
T ss_pred cCCccc------ccccHHHHHHHHHHhcCCccCCCCchhhhhc
Confidence 999986 3444455566777888888777777664444
No 310
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.03 E-value=5.4e-06 Score=81.98 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=75.9
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-.++|+.+|...+..+... .+.. .-++++|+|.+.+.++ +.+..|+..+....
T Consensus 61 ~l~i~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-------------------- 113 (181)
T 1fzq_A 61 KLNVWDIGGQRKIRPYWRS--YFEN----TDILIYVIDSADRKRF-EETGQELTELLEEE-------------------- 113 (181)
T ss_dssp EEEEEECSSCGGGHHHHHH--HHTT----CSEEEEEEETTCGGGH-HHHHHHHHHHTTCG--------------------
T ss_pred EEEEEECCCCHHHHHHHHH--HhCC----CCEEEEEEECcCHHHH-HHHHHHHHHHHhCh--------------------
Confidence 4589999998666554333 1221 2378999999999987 66666654321100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~ 550 (890)
...++|++||+||+|+....+. +.+.+.+. ..+...+...+.||+
T Consensus 114 -------------------------------~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa 159 (181)
T 1fzq_A 114 -------------------------------KLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSA 159 (181)
T ss_dssp -------------------------------GGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCT
T ss_pred -------------------------------hhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCceEEEEccC
Confidence 0124899999999999754332 22222221 012234667899999
Q ss_pred CChhhHHHHHHHHhhhhc
Q psy11649 551 LDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~f 568 (890)
+.+.|++.++.+|...+.
T Consensus 160 ~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 160 LTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTCTTHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 311
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.99 E-value=3.8e-05 Score=87.13 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=90.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCc---cc-----eeEEEEEEeccccceEEEEEEcCCCcc----hhhHHhhhh
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTL---AL-----EYIYARKSGKTVMKDICHLWELGSGTS----RLEVASLFS 104 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~~~~~kpti---gv-----dY~f~~~~g~~~~k~~l~IwDlpG~~~----~~~Li~~~r 104 (890)
.++|+|.+|||||||+|.++|-.....-.+ +. .|.+. ......+.+||++|... ...++..+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-----~~~~~~ltv~D~~g~~~~~~~~~~~L~~~- 144 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-----HPNIPNVVFWDLPGIGSTNFPPDTYLEKM- 144 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-----CSSCTTEEEEECCCGGGSSCCHHHHHHHT-
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-----ccccCCeeehHhhcccchHHHHHHHHHHc-
Confidence 699999999999999999998311110000 00 11111 11111589999998532 23333332
Q ss_pred ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649 105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK 184 (890)
Q Consensus 105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK 184 (890)
.+. +.+.+++ ++......-.-.+..++. ..+.|+++|.||
T Consensus 145 --~L~--~~~~~~~-lS~G~~~kqrv~la~aL~-----------------------------------~~~~p~~lV~tk 184 (413)
T 1tq4_A 145 --KFY--EYDFFII-ISATRFKKNDIDIAKAIS-----------------------------------MMKKEFYFVRTK 184 (413)
T ss_dssp --TGG--GCSEEEE-EESSCCCHHHHHHHHHHH-----------------------------------HTTCEEEEEECC
T ss_pred --CCC--ccCCeEE-eCCCCccHHHHHHHHHHH-----------------------------------hcCCCeEEEEec
Confidence 111 2344554 777632221012222221 125899999999
Q ss_pred ccCC------CCCCcchhhhhHHHHHHHHH----HcC---CeEEEEec--cCCCCHHHHHHHHHHHH
Q psy11649 185 YDLF------ENLEPNKKRIAVQCLRYLAH----VNG---ASLLFHSS--LDPGLVKRTRDILNHYA 236 (890)
Q Consensus 185 ~Dl~------~d~d~e~r~~i~~~lr~la~----~~G---a~l~etSA--K~~~nId~Lk~~I~~~l 236 (890)
.|+. ..+|+..+..+.+.+++++. ..| ..++.+|+ .++.|++++.+.|...+
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 9974 13455566666677777762 333 35788899 67778999999998776
No 312
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.99 E-value=2.2e-06 Score=95.80 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC-----C----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh--
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEKN-----D----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-- 103 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~~-----~----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-- 103 (890)
..+|+++|.+|||||||+|+|++.. . ...|+++.+. ....... .+.++||||......+....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~----~~~~~~~--~~~liDtPG~~~~~~~~~~l~~ 233 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL----IDIPLDE--ESSLYDTPGIINHHQMAHYVGK 233 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE----EEEESSS--SCEEEECCCBCCTTSGGGGSCH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce----EEEEecC--CeEEEeCCCcCcHHHHHHHhhH
Confidence 3579999999999999999999841 0 1223333331 1111111 38999999975433222111
Q ss_pred --hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEE
Q psy11649 104 --SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILI 181 (890)
Q Consensus 104 --r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVV 181 (890)
....+.....+.+++++|....--+ ..+.. ...+...++|+++|
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~~~~-g~l~~---------------------------------~d~l~~~~~~~~~v 279 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQTLFF-SGLAR---------------------------------FDYVSGGRRAFTCH 279 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEEEEE-TTTEE---------------------------------EEEEESSSEEEEEE
T ss_pred HHHHHhccccccCceEEEEcCCCEEEE-cceEE---------------------------------EEEecCCCceEEEE
Confidence 0000000135677777765221110 00000 01133447899999
Q ss_pred eecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649 182 GGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 220 (890)
Q Consensus 182 gNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK 220 (890)
.||+|.. ++.........+.+..|..+...+++
T Consensus 280 ~nk~d~~------~~~~~~~~~~~~~~~~g~~l~p~~~~ 312 (368)
T 3h2y_A 280 FSNRLTI------HRTKLEKADELYKNHAGDLLSPPTPE 312 (368)
T ss_dssp ECTTSCE------EEEEHHHHHHHHHHHBTTTBCSSCHH
T ss_pred ecCcccc------ccccHHHHHHHHHHHhCCccCCCchh
Confidence 9999986 44455666777788888876666654
No 313
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.97 E-value=1.7e-05 Score=79.38 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=68.6
Q ss_pred eEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649 422 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL 501 (890)
Q Consensus 422 ~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 501 (890)
-++++|+|++.+.++ +.++.|...++....
T Consensus 82 ~~~i~v~dv~~~~s~-~~~~~~~~~l~~~~~------------------------------------------------- 111 (192)
T 2cjw_A 82 DAYLIVYSITDRASF-EKASELRIQLRRARQ------------------------------------------------- 111 (192)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHHHHHHTT-------------------------------------------------
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHHHHhhC-------------------------------------------------
Confidence 378999999999988 788888876654211
Q ss_pred cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
.-++|+|+|++|+|+..+-. ......+.+|..+|+..|.||+|.+.|++.++..|...+.
T Consensus 112 --~~~~piilV~NK~Dl~~~r~-----v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 112 --TEDIPIILVGNKSDLVRXRE-----VSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp --TSCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred --CCCCeEEEEEechhhhcccc-----ccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHH
Confidence 01479999999999863211 1122345678889999999999999999999999988764
No 314
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.93 E-value=3.4e-05 Score=83.64 Aligned_cols=106 Identities=9% Similarity=0.087 Sum_probs=76.3
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..||++ +..+..|.+. .+. +. -.+|+|+|.+.|....+.+++|+..++. .
T Consensus 64 ~~~iwD~--qer~~~l~~~--~~~--~a--d~vilV~D~~~~~~s~~~l~~~l~~~~~---~------------------ 114 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKP--HVA--NV--DQVILVVTVKMPETSTYIIDKFLVLAEK---N------------------ 114 (301)
T ss_dssp SEEEEEE--CCCSCEETTT--TEE--SC--CEEEEEECSSTTCCCHHHHHHHHHHHHH---T------------------
T ss_pred eEEEEEE--ccccceeecc--ccc--cC--CEEEEEEeCCCCCCCHHHHHHHHHHHHH---C------------------
Confidence 4689999 5555655554 222 22 2799999999997433889999875532 0
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEec
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHS 549 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS 549 (890)
++|+|||+||+|+.. +... ..+..++..|+ +..|.||
T Consensus 115 ----------------------------------~~piilv~NK~DL~~---~~~v----~~~~~~~~~~~~~~~~~~~S 153 (301)
T 1u0l_A 115 ----------------------------------ELETVMVINKMDLYD---EDDL----RKVRELEEIYSGLYPIVKTS 153 (301)
T ss_dssp ----------------------------------TCEEEEEECCGGGCC---HHHH----HHHHHHHHHHTTTSCEEECC
T ss_pred ----------------------------------CCCEEEEEeHHHcCC---chhH----HHHHHHHHHHhhhCcEEEEE
Confidence 378999999999963 2221 33556666777 8899999
Q ss_pred cCChhhHHHHHHHHhhhh
Q psy11649 550 SLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 550 ~K~~~n~~~l~kyi~hr~ 567 (890)
+|.+.|++.++.++...+
T Consensus 154 Aktg~gv~~lf~~l~gei 171 (301)
T 1u0l_A 154 AKTGMGIEELKEYLKGKI 171 (301)
T ss_dssp TTTCTTHHHHHHHHSSSE
T ss_pred CCCCcCHHHHHHHhcCCe
Confidence 999999999999886543
No 315
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.93 E-value=1.5e-05 Score=89.05 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=71.7
Q ss_pred CCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649 92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI 171 (890)
Q Consensus 92 G~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li 171 (890)
..++|.+++..+ ++ +++++++|+|++++. ..|...+.+...
T Consensus 55 ~~e~f~~~l~~i----~~--~~~~il~VvD~~d~~------~~~~~~l~~~~~--------------------------- 95 (368)
T 3h2y_A 55 TDDDFLRILNGI----GK--SDALVVKIVDIFDFN------GSWLPGLHRFVG--------------------------- 95 (368)
T ss_dssp -CHHHHHHHHHH----HH--SCCEEEEEEETTSHH------HHCCTTHHHHSS---------------------------
T ss_pred CHHHHHHHHHHH----hc--cCcEEEEEEECCCCc------ccHHHHHHHHhC---------------------------
Confidence 346788888777 22 377999999999853 234444433211
Q ss_pred cCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 172 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 172 ~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
+.|+++|+||+|+.... .......+.++.++...|. .++++||+++.|++++++.|....
T Consensus 96 ---~~p~ilV~NK~DL~~~~--~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 96 ---NNKVLLVGNKADLIPKS--VKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp ---SSCEEEEEECGGGSCTT--SCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---CCcEEEEEEChhcCCcc--cCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 47999999999996321 1223344556667788887 799999999999999999997764
No 316
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.91 E-value=1e-05 Score=78.50 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=43.4
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
++|++||+||+|+... +.+......+..+.++..+| +..|.||++.+.|++.++..|...+-
T Consensus 107 ~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 107 NVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 4789999999999753 22221111122334555566 68899999999999999999987654
No 317
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.91 E-value=1.2e-05 Score=81.42 Aligned_cols=114 Identities=17% Similarity=0.043 Sum_probs=73.1
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCC-CchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS-RLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS-~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
-..+|+..|...+..++.. .+.......-.+|+|+|.+ .+.++ +.+..|+..+..+...
T Consensus 56 ~~~l~Dt~G~~~~~~~~~~--~~~~~~~~~~~~i~v~D~~~~~~~~-~~~~~~~~~~~~~~~~----------------- 115 (218)
T 1nrj_B 56 GVTLVDFPGHVKLRYKLSD--YLKTRAKFVKGLIFMVDSTVDPKKL-TTTAEFLVDILSITES----------------- 115 (218)
T ss_dssp SCEEEECCCCGGGTHHHHH--HHHHHGGGEEEEEEEEETTSCTTCC-HHHHHHHHHHHHHHHH-----------------
T ss_pred eEEEEECCCcHHHHHHHHH--HHHhccccCCEEEEEEECCCChHHH-HHHHHHHHHHHhcccc-----------------
Confidence 4689999999776555443 1221111124689999999 77776 6677776555443321
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC-hhHHHHHHHHHHHHHHHcCCceeEec
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE-PNKKRIAVQCLRYLAHVNGASLLFHS 549 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~-~E~~d~Iq~~lR~fcl~yGAsL~ftS 549 (890)
..+.++|++|||||+|+..... ++..+.++..++.+|..+|+.++.+|
T Consensus 116 -------------------------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~S 164 (218)
T 1nrj_B 116 -------------------------------SCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVE 164 (218)
T ss_dssp -------------------------------HSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -------------------------------cccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 0012589999999999986655 45567888899999999999999999
Q ss_pred cCChhhH
Q psy11649 550 SLDPGLV 556 (890)
Q Consensus 550 ~K~~~n~ 556 (890)
+|++.|-
T Consensus 165 a~~~~~~ 171 (218)
T 1nrj_B 165 RKINEED 171 (218)
T ss_dssp -------
T ss_pred ccccccc
Confidence 9998874
No 318
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.90 E-value=2.1e-05 Score=79.32 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=72.5
Q ss_pred eeEEEEeCCCccccc-ccccccccccccccceEEEEEEeCCCchh-HHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649 392 ICHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNS-LWTEAETFLAKFRAIFESNESVREKRGSFEHFRT 469 (890)
Q Consensus 392 i~~vW~L~G~~~~~~-Ll~~~~al~~~~~~~~~viivlDlS~Pw~-l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~ 469 (890)
-+.||+..|...+.. +... -+. ..-++|+|+|.+.+.. +.+.++.|...++....
T Consensus 55 ~~~i~Dt~G~~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~----------------- 111 (214)
T 2fh5_B 55 SLTLIDLPGHESLRFQLLDR--FKS----SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA----------------- 111 (214)
T ss_dssp EEEEEECCCCHHHHHHHHHH--HGG----GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-----------------
T ss_pred EEEEEECCCChhHHHHHHHH--HHh----hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh-----------------
Confidence 368999999865554 3332 111 1237899999998643 43444445444433110
Q ss_pred ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-HHHHHHHHHHH------------
Q psy11649 470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-KKRIAVQCLRY------------ 536 (890)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~~d~Iq~~lR~------------ 536 (890)
...++|+||||||+|+....+.+ ..+.+++.+..
T Consensus 112 ---------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 112 ---------------------------------LKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp ---------------------------------STTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred ---------------------------------cccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence 01248999999999998544322 23455554442
Q ss_pred ----------------HHHHc---CCceeEeccCCh------hhHHHHHHHHhhh
Q psy11649 537 ----------------LAHVN---GASLLFHSSLDP------GLVKRTRDILNHY 566 (890)
Q Consensus 537 ----------------fcl~y---GAsL~ftS~K~~------~n~~~l~kyi~hr 566 (890)
||... ++..|-||+|.+ .|++.++.+|...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 12212 666788999999 9999999998764
No 319
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.88 E-value=1.6e-05 Score=81.58 Aligned_cols=62 Identities=8% Similarity=-0.118 Sum_probs=48.4
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
++|+|||+||+|+...- +........++.++..+| +..|.||+|.+.|++.++..|...+..
T Consensus 142 ~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNMD--SLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCch--hhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 47999999999997421 111233456777888898 899999999999999999999887754
No 320
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.87 E-value=2.1e-05 Score=87.83 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=68.3
Q ss_pred eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCCC----------chhHHHHHHHHHHHHHHHHHhhhhHHhhc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSR----------LNSLWTEAETFLAKFRAIFESNESVREKR 461 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~----------Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~ 461 (890)
.++|+.||+.++..+-.. .+ ...++|||+|+|. +..+-++++.|..++ ..
T Consensus 203 l~i~Dt~Gq~~~r~~w~~-------~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~----~~-------- 263 (362)
T 1zcb_A 203 FKMVDVGGQRSERKRWFE-------CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV----NN-------- 263 (362)
T ss_dssp EEEEEECC-------CTT-------SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH----TC--------
T ss_pred EEEEeccchhhhhhhHHH-------HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh----cc--------
Confidence 589999999776654433 22 2358999999999 777754444332222 11
Q ss_pred ccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-------------CC-----
Q psy11649 462 GSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-------------LE----- 523 (890)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-------------~~----- 523 (890)
+.+ .++|+|||++|+|++.+ |+
T Consensus 264 ------------------~~~----------------------~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~ 303 (362)
T 1zcb_A 264 ------------------RVF----------------------SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 303 (362)
T ss_dssp ------------------GGG----------------------TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTC
T ss_pred ------------------hhh----------------------CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCC
Confidence 000 14899999999999731 11
Q ss_pred -hhHHHHHHHHHHHHHH---HcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 524 -PNKKRIAVQCLRYLAH---VNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 524 -~E~~d~Iq~~lR~fcl---~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
++-.+++......++. ..+...++||++...|++.++..+...+..
T Consensus 304 ~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 304 LRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 1111222222111212 346778899999999999999988876653
No 321
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.85 E-value=7.3e-05 Score=83.14 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.2
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHH
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFL 56 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~ 56 (890)
...+.||+++|.++|||||++.++-
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHHHH
Confidence 4567899999999999999999974
No 322
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.84 E-value=9.2e-05 Score=86.01 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=20.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHH
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFL 56 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~ 56 (890)
....|+|+|.+||||||++++|.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 323
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.80 E-value=4.3e-05 Score=75.48 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCcEEEEEeccccccCCChhHHH-HHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKR-IAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d-~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|++||+||+|+.. ++... .+.+..+.++...++..|.+|++.+.|++.++.+|...+
T Consensus 134 ~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 134 GIPVIVIATKADKIP---KGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCEEEEEECGGGSC---GGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCC---hHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 478999999999974 22232 233333336666789999999999999999999987654
No 324
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.80 E-value=3.2e-05 Score=86.04 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=75.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhH------HHHHHHHHHHHHHHHHhhhhHHhhccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSL------WTEAETFLAKFRAIFESNESVREKRGSFE 465 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l------~~sL~~W~~~~r~~i~~~~~~~~~~~~~~ 465 (890)
..++|+.||+..+..+-.. -. .+ ..+||||+|+|.+.+. .++++.|...++.....
T Consensus 194 ~l~iwDt~GQe~~r~~w~~--yf--~~--a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~------------ 255 (353)
T 1cip_A 194 HFKMFDVGGQRSERKKWIH--CF--EG--VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN------------ 255 (353)
T ss_dssp EEEEEEECCSGGGGGGGGG--GC--TT--CSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC------------
T ss_pred eEEEEeCCCchhhhHHHHH--HH--hc--CCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC------------
Confidence 3589999999777655443 11 12 3489999999995320 02334444333332221
Q ss_pred ccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-------------C----C-hhHH
Q psy11649 466 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-------------L----E-PNKK 527 (890)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-------------~----~-~E~~ 527 (890)
..+ -++|+||||+|+|++.+ | + +|-.
T Consensus 256 --------------~~~----------------------~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~ 299 (353)
T 1cip_A 256 --------------KWF----------------------TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA 299 (353)
T ss_dssp --------------GGG----------------------TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHH
T ss_pred --------------ccc----------------------cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHH
Confidence 000 14899999999999721 1 1 1112
Q ss_pred HHHHHHHHHHH---HHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 528 RIAVQCLRYLA---HVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 528 d~Iq~~lR~fc---l~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
+++......+. ...+...++||++...|++.++..+...+..
T Consensus 300 ~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 300 AYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 23322211111 1357788999999999999999998877764
No 325
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.78 E-value=4e-05 Score=85.54 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=71.2
Q ss_pred CCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccc
Q psy11649 92 SGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGL 170 (890)
Q Consensus 92 G~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~l 170 (890)
.+++|.+++..+ + +++++++|+|++++.+- |...+.+.+
T Consensus 57 ~~e~f~~~L~~~~~-------~~~lil~VvD~~d~~~s------~~~~l~~~l--------------------------- 96 (369)
T 3ec1_A 57 DDDDFLSMLHRIGE-------SKALVVNIVDIFDFNGS------FIPGLPRFA--------------------------- 96 (369)
T ss_dssp --CHHHHHHHHHHH-------HCCEEEEEEETTCSGGG------CCSSHHHHC---------------------------
T ss_pred CHHHHHHHHHHhhc-------cCcEEEEEEECCCCCCc------hhhHHHHHh---------------------------
Confidence 467888888777 3 38899999999997652 222222221
Q ss_pred ccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 171 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 171 i~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.|+++|+||+|+.... .......+.++.++...|. .++++||+++.|++++.+.|....
T Consensus 97 ---~~~piilV~NK~DLl~~~--~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 97 ---ADNPILLVGNKADLLPRS--VKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp ---TTSCEEEEEECGGGSCTT--CCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ---CCCCEEEEEEChhcCCCc--cCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 147999999999997321 1123345556666777887 689999999999999999998764
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.78 E-value=8.9e-05 Score=74.18 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=82.4
Q ss_pred eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 472 (890)
+.+|+..|...+..+... ... . ...+++|+|++.+.++ +.+..|+..++.+..
T Consensus 56 ~~i~Dt~g~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------- 108 (199)
T 2f9l_A 56 AQIWDTAGQERYRRITSA--YYR--G--AVGALLVYDIAKHLTY-ENVERWLKELRDHAD-------------------- 108 (199)
T ss_dssp EEEEECSSGGGTTCCCHH--HHT--T--CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred EEEEECCCchhhhhhhHH--HHh--c--CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence 478999998665554444 122 1 2368999999999986 777788765543100
Q ss_pred cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649 473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 552 (890)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~ 552 (890)
.++|+++|++|+|+....+.. ...+|.+|...+..++.||++.
T Consensus 109 --------------------------------~~~~i~~v~nK~Dl~~~~~~~-----~~~a~~l~~~~~~~~~d~Sal~ 151 (199)
T 2f9l_A 109 --------------------------------SNIVIMLVGNKSDLRHLRAVP-----TDEARAFAEKNNLSFIETSALD 151 (199)
T ss_dssp --------------------------------TTCEEEEEEECTTCGGGCCSC-----HHHHHHHHHHTTCEEEECCTTT
T ss_pred --------------------------------CCCeEEEEEECcccccccCcC-----HHHHHHHHHHcCCeEEEEeCCC
Confidence 136899999999996322111 1237889999999999999999
Q ss_pred hhhHHHHHHHHhhhhcC
Q psy11649 553 PGLVKRTRDILNHYAFS 569 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~fg 569 (890)
+.|++.+++.|...++.
T Consensus 152 ~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 152 STNVEEAFKNILTEIYR 168 (199)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988875
No 327
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.77 E-value=3e-05 Score=75.23 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=43.2
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|+|+|++|+|+...-.- ......+|..+|+..+.||+|.+.|++.++..|...+
T Consensus 108 ~~p~ilv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 108 GANLLLALNKMDLAKSLGI------EIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TCCEEEEEECHHHHHHTTC------CCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CCCEEEEEEchHhccccCh------hhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4789999999998632110 0124567778899999999999999999999987654
No 328
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.75 E-value=2.6e-05 Score=74.25 Aligned_cols=51 Identities=22% Similarity=0.087 Sum_probs=41.6
Q ss_pred CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccCChhhHHHHHHHHhhhh
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
+|++||+||+|+... + ..++.++ .+|+ ..+.+|+|.+.|++.++.+|...+
T Consensus 109 ~p~ilv~nK~Dl~~~-~--------~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 109 KPVILVATKVDDPKH-E--------LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CCEEEEEECCCSGGG-G--------GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCEEEEEECcccccc-h--------HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 789999999999754 1 2344566 7888 799999999999999999987653
No 329
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.74 E-value=3.2e-05 Score=75.84 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=45.8
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc-------eeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-------LLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs-------L~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
++|++||+||+|+...- ...++.+|..+|+. .+.||++.+.|++.++.+|...+..
T Consensus 122 ~~piilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 122 DIPTIVAVNKLDKIKNV--------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCEEEEEECGGGCSCH--------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCceEEEeehHhccCcH--------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 58999999999997432 44566778888875 6999999999999999999887643
No 330
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.73 E-value=2.3e-05 Score=86.01 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=73.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..||+..|+..+..+... .+. ..-++|+|+|.+.+.++ +.+..|+..+..+..
T Consensus 210 ~l~i~Dt~G~~~~~~~~~~--~~~----~ad~vilV~D~~~~~s~-~~~~~~~~~~~~~~~------------------- 263 (329)
T 3o47_A 210 SFTVWDVGGQDKIRPLWRH--YFQ----NTQGLIFVVDSNDRERV-NEAREELMRMLAEDE------------------- 263 (329)
T ss_dssp EEEEEECC-----CCSHHH--HHT----TEEEEEEEEETTCSSSH-HHHHHHHHHHHTCGG-------------------
T ss_pred EEEEEECCCCHhHHHHHHH--Hhc----cCCEEEEEEECCchHHH-HHHHHHHHHHHhhhc-------------------
Confidence 3589999998766655443 222 13379999999999987 555555433221000
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~ 550 (890)
..++|+|||+||+|+....+.+ .+.+.+ ..++...+...|.+|+
T Consensus 264 --------------------------------~~~~piilV~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~vSA 308 (329)
T 3o47_A 264 --------------------------------LRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRHRNWYIQATCA 308 (329)
T ss_dssp --------------------------------GTTCEEEEEEECTTSTTCCCHH---HHHHHHTCTTCCSSCEEEEECBT
T ss_pred --------------------------------cCCCeEEEEEECccCCcccCHH---HHHHHhchhhhhcCCCEEEEEEC
Confidence 0148999999999997543322 222222 2222334667899999
Q ss_pred CChhhHHHHHHHHhhhhcC
Q psy11649 551 LDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~fg 569 (890)
|.+.|++.++..|...+..
T Consensus 309 k~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 309 TSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTTBTHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 331
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.71 E-value=0.00011 Score=72.04 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=50.5
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
++|+|||+||+|+. +++........++.++..+| +..+.+|++.+.|++.++..|...+.
T Consensus 133 ~~p~i~v~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 133 NIPFTIVLTKMDKV---KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TCCEEEEEECGGGS---CGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCCEEEEEEChhcC---ChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 47899999999997 44556667777888888866 68899999999999999999987764
No 332
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.69 E-value=4.1e-05 Score=89.33 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=80.0
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-.++|+++|...+..+... .+.. ..++|+|+|.+.+ +.++.|+..++++..
T Consensus 99 ~~~i~Dt~G~e~~~~~~~~--~l~~----~d~ii~V~D~s~~----~~~~~~~~~l~~~~~------------------- 149 (535)
T 3dpu_A 99 LFHFWDFGGQEIMHASHQF--FMTR----SSVYMLLLDSRTD----SNKHYWLRHIEKYGG------------------- 149 (535)
T ss_dssp EEEEECCCSCCTTTTTCHH--HHHS----SEEEEEEECGGGG----GGHHHHHHHHHHHSS-------------------
T ss_pred EEEEEECCcHHHHHHHHHH--HccC----CcEEEEEEeCCCc----hhHHHHHHHHHHhCC-------------------
Confidence 4699999998777666555 2222 3478999999986 566788877765210
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
.+|+|||+||+|+...-+-. .+.++.++..+|+..|.+|++
T Consensus 150 ----------------------------------~~pvilV~NK~Dl~~~~~v~-----~~~~~~~~~~~~~~~~~vSA~ 190 (535)
T 3dpu_A 150 ----------------------------------KSPVIVVMNKIDENPSYNIE-----QKKINERFPAIENRFHRISCK 190 (535)
T ss_dssp ----------------------------------SCCEEEEECCTTTCTTCCCC-----HHHHHHHCGGGTTCEEECCC-
T ss_pred ----------------------------------CCCEEEEEECCCcccccccC-----HHHHHHHHHhcCCceEEEecC
Confidence 26899999999997432211 245677888899999999999
Q ss_pred ChhhHHHHHHHHhhhhcCCCC
Q psy11649 552 DPGLVKRTRDILNHYAFSSHL 572 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~fg~~~ 572 (890)
.+.|++.|+..|...+...+.
T Consensus 191 ~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 191 NGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp ----CTTHHHHHHHHHTCTTS
T ss_pred cccCHHHHHHHHHHHHhcccc
Confidence 999999999999998876543
No 333
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.66 E-value=5e-05 Score=83.60 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=77.1
Q ss_pred eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCC-------CchhHHHHHHHHHHHHHHHHHhhhhHHhhcccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLS-------RLNSLWTEAETFLAKFRAIFESNESVREKRGSF 464 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS-------~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~ 464 (890)
.+||+.||+..++.+-.. .+ ...++|+|+|+| ...+. ++++.|...++..+..
T Consensus 169 l~iwDtgGQe~~R~~w~~-------yf~~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~----------- 229 (327)
T 3ohm_A 169 FRMVDVGGQRSERRKWIH-------CFENVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITY----------- 229 (327)
T ss_dssp EEEEEECCSHHHHTTGGG-------GCSSCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTS-----------
T ss_pred eEEEEcCCchhHHHHHHH-------HhCCCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhh-----------
Confidence 589999999776654332 22 234899999988 33222 4555555555543332
Q ss_pred cccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-------------CC------hh
Q psy11649 465 EHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-------------LE------PN 525 (890)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-------------~~------~E 525 (890)
..+ -.+|+|||++|+|++.+ +. ++
T Consensus 230 ---------------~~~----------------------~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~ 272 (327)
T 3ohm_A 230 ---------------PWF----------------------QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA 272 (327)
T ss_dssp ---------------GGG----------------------TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHH
T ss_pred ---------------hcc----------------------CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHH
Confidence 000 13899999999999731 11 11
Q ss_pred HHHHHHHHHHHH--HHHcCCceeEeccCChhhHHHHHHHHhhhhcCCC
Q psy11649 526 KKRIAVQCLRYL--AHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 526 ~~d~Iq~~lR~f--cl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~ 571 (890)
-.+||....... +...+.-.+|||+|+..|++.++..+...+..-.
T Consensus 273 a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 273 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 223443333222 2334556789999999999999999988776543
No 334
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.63 E-value=8.8e-05 Score=85.43 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=78.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-..+|+.+|...+..+... .+.. .-++|+|+|.+.+.++ +.+..|+..+..+..
T Consensus 367 ~~~l~Dt~G~~~~~~~~~~--~~~~----ad~~i~V~D~~~~~s~-~~~~~~~~~~~~~~~------------------- 420 (497)
T 3lvq_E 367 KFNVWDVGGQDKIRPLWRH--YYTG----TQGLIFVVDCADRDRI-DEARQELHRIINDRE------------------- 420 (497)
T ss_dssp EEEEEEECCCGGGSGGGGG--GGTT----CCEEEEEEETTCGGGH-HHHHHHHHHHHTSGG-------------------
T ss_pred EEEEEECCCcHHHHHHHHH--Hhcc----CCEEEEEEECcchhHH-HHHHHHHHHHhhhhh-------------------
Confidence 3589999998776665444 2322 2378999999999987 666666554422100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEecc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSS 550 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~ 550 (890)
.-++|+|||++|+|+....+.+ .+.+.+. .++...++..|.||+
T Consensus 421 --------------------------------~~~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~SA 465 (497)
T 3lvq_E 421 --------------------------------MRDAIILIFANKQDLPDAMKPH---EIQEKLGLTRIRDRNWYVQPSCA 465 (497)
T ss_dssp --------------------------------GTTCEEEEEEECCSSSSCCCHH---HHHHHTTCTTCCSSCEEEEECBT
T ss_pred --------------------------------cCCCcEEEEEECCCCCcCCCHH---HHHHHhchhhhhcCCeEEEEEEC
Confidence 0158999999999997544322 2222221 122234566899999
Q ss_pred CChhhHHHHHHHHhhhhcC
Q psy11649 551 LDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~fg 569 (890)
+.+.+++.++++|...+-.
T Consensus 466 ~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 466 TSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TTTBTHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 335
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.62 E-value=0.00024 Score=80.77 Aligned_cols=44 Identities=18% Similarity=0.060 Sum_probs=28.1
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccC
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 221 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~ 221 (890)
++|+|+|.||+|.+. +++.......++.-....|++++++|.-+
T Consensus 176 ~~~vI~Vi~KtD~Lt---~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 176 KVNIIPIIAKADAIS---KSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp CSEEEEEESCGGGSC---HHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCEEEEEcchhccc---hHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 689999999999863 23333344445543345789999988643
No 336
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.61 E-value=0.00014 Score=82.19 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=73.6
Q ss_pred eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCCC----------chhHHHHHHHHHHHHHHHHHhhhhHHhhc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSR----------LNSLWTEAETFLAKFRAIFESNESVREKR 461 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~----------Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~ 461 (890)
.+||+.||+..++.+-.. .+ ...++|||+|+|. ..++ +....|...+.. .
T Consensus 219 l~iwDtaGQe~~r~~w~~-------yf~~a~~iIfV~dis~ydq~l~ed~~~ns~-~e~~~~~~~i~~---~-------- 279 (402)
T 1azs_C 219 FHMFDVGGQRDERRKWIQ-------CFNDVTAIIFVVASSSYNMVIREDNQTNRL-QEALNLFKSIWN---N-------- 279 (402)
T ss_dssp EEEEEECCSGGGGGGGGG-------GTTTCCEEEEEEETTGGGCBCTTTSCSBHH-HHHHHHHHHHHT---C--------
T ss_pred ceecccchhhhhhhhhHh-------hccCCCEEEEEEECcccccccccccccchH-HHHHHHHHHHHh---c--------
Confidence 589999999777655443 22 2358999999999 7776 444455433221 0
Q ss_pred ccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-----C-C-----hh-----
Q psy11649 462 GSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-----L-E-----PN----- 525 (890)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-----~-~-----~E----- 525 (890)
..+ -.+||||||+|+|++.. . + +|
T Consensus 280 ------------------~~~----------------------~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~ 319 (402)
T 1azs_C 280 ------------------RWL----------------------RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYT 319 (402)
T ss_dssp ------------------TTC----------------------SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCC
T ss_pred ------------------ccC----------------------CCCeEEEEEEChhhhhhhhcccccchhhccccccccc
Confidence 000 13799999999998631 1 0 00
Q ss_pred -------------HHHHHHHHH-HHHHHHc--------CCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 526 -------------KKRIAVQCL-RYLAHVN--------GASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 526 -------------~~d~Iq~~l-R~fcl~y--------GAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
..+..++.+ .+|+..+ +.-.++||+++..|++.++..+...+.
T Consensus 320 ~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 320 TPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp CCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence 112222222 3344442 445578999999999999998877665
No 337
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.60 E-value=5.5e-05 Score=83.30 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=78.6
Q ss_pred eEEEEeCCCccccc-cc--ccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649 393 CHLWELGSGTSRLE-VA--SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT 469 (890)
Q Consensus 393 ~~vW~L~G~~~~~~-Ll--~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~ 469 (890)
++||+.+|+..+.. .+ .. -.. ....+|+|+|.+.+ +.++++.|.+.++..-+.
T Consensus 48 LqIWDTAGQErf~~~~l~~~~--yyr----~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~---------------- 103 (331)
T 3r7w_B 48 LAVMELPGQLNYFEPSYDSER--LFK----SVGALVYVIDSQDE--YINAITNLAMIIEYAYKV---------------- 103 (331)
T ss_dssp EEEEECCSCSSSCCCSHHHHH--HHT----TCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHH----------------
T ss_pred EEEEECCCchhccchhhhhhh--hcc----CCCEEEEEEECCch--HHHHHHHHHHHHHHHhhc----------------
Confidence 69999999966542 11 11 111 23379999999998 446666665544331110
Q ss_pred ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-h-HHHHHHHHHHHHHHH----cCC
Q psy11649 470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-N-KKRIAVQCLRYLAHV----NGA 543 (890)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E-~~d~Iq~~lR~fcl~----yGA 543 (890)
. -++|++|||+|+|+..+-+. + +++.-++....+|.. +|+
T Consensus 104 ------------~----------------------~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i 149 (331)
T 3r7w_B 104 ------------N----------------------PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149 (331)
T ss_dssp ------------C----------------------TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred ------------C----------------------CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence 0 04899999999999742111 1 234445556678886 788
Q ss_pred ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
..|=||+|+ .|+...+..|.+.+..
T Consensus 150 ~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 150 SFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp EEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred eEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 888899998 5999999999998874
No 338
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.58 E-value=0.00035 Score=69.60 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=79.3
Q ss_pred eEEEEeCCCcccccccccccccccccccc-eEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLFSSFSLTAQSG-FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~-~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..+|+..|...+..+... .... ..+++|+|.+.+.++ +.++.|+..+++...
T Consensus 80 ~~i~Dt~g~~~~~~~~~~-------~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------- 132 (191)
T 1oix_A 80 AQIWDTAGLERYRAITSA-------YYRGAVGALLVYDIAKHLTY-ENVERWLKELRDHAD------------------- 132 (191)
T ss_dssp EEEEEECSCCSSSCCCHH-------HHTTCCEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred EEEEECCCCcchhhhhHH-------HhhcCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence 368999987555443333 1221 268899999999876 778888765543100
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL 551 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K 551 (890)
...|+++|++|+|+-..... -...+|.+|...+..++.||++
T Consensus 133 ---------------------------------~~~~i~~v~nK~Dl~~~~~~-----~~~~a~~l~~~~~~~~ld~Sal 174 (191)
T 1oix_A 133 ---------------------------------SNIVIMLVGNKSDLRHLRAV-----PTDEARAFAEKNGLSFIETSAL 174 (191)
T ss_dssp ---------------------------------TTCEEEEEEECGGGGGGCCS-----CHHHHHHHHHHTTCEEEECCTT
T ss_pred ---------------------------------CCCcEEEEEECccccccccc-----CHHHHHHHHHHcCCEEEEEeCC
Confidence 02688999999998632111 1234788999999999999999
Q ss_pred ChhhHHHHHHHHhhhhc
Q psy11649 552 DPGLVKRTRDILNHYAF 568 (890)
Q Consensus 552 ~~~n~~~l~kyi~hr~f 568 (890)
.+.|++.+++.|...+|
T Consensus 175 d~~~v~~l~~~l~~~i~ 191 (191)
T 1oix_A 175 DSTNVEAAFQTILTEIY 191 (191)
T ss_dssp TCTTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999987764
No 339
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.53 E-value=0.00026 Score=71.60 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=43.3
Q ss_pred CCcEEEEEeccccccCCChhHH----HHHHHHHHHHHH---HcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKK----RIAVQCLRYLAH---VNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~----d~Iq~~lR~fcl---~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
++|+|||+||+|+.. .+.. +.+.+.+..+.. ..++..|.+|++.+.|++.++.+|...+-.
T Consensus 144 ~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 144 GKPIHSLLTKCDKLT---RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CCCEEEEEECGGGSC---HHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCEEEEEeccccCC---hhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 478999999999973 2332 222233332221 267889999999999999999999887743
No 340
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.51 E-value=0.00017 Score=74.65 Aligned_cols=110 Identities=7% Similarity=-0.078 Sum_probs=62.4
Q ss_pred cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649 90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG 169 (890)
Q Consensus 90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~ 169 (890)
.+||.+++.++..| |. ++|++|+|+|.++.+++ + ...-+..+...+.+ +
T Consensus 109 ~GGQ~klRplWr~Y----y~--~TdglIfVVDSsD~~R~-e-ak~EL~eL~~mL~e---------------------e-- 157 (227)
T 3l82_B 109 QGSRYSVIPQIQKV----CE--VVDGFIYVANAEAHKRH-E-WQDEFSHIMAMTDP---------------------A-- 157 (227)
T ss_dssp --------CCHHHH----HH--HCSEEEEEEECBTTCCC-C-HHHHHHHHHHHSCT---------------------T--
T ss_pred cCcHHHHHHHHHHH----hc--CCCEEEEEeccccHhHH-H-HHHHHHHHHHHhcc---------------------h--
Confidence 34888999999999 22 59999999999998775 2 22222222221111 0
Q ss_pred cccCCCCcEEEEeecc-cCCCCCCcchhhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 170 LIRTFPVPLILIGGKY-DLFENLEPNKKRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 170 li~~l~IPiIVVgNK~-Dl~~d~d~e~r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
....++|++|.+||. |+...++..+ +.+. +..+ .....+..|||++|+|+.+-.++|...+
T Consensus 158 -~~L~gapLLVlANKqqDlp~Ams~~E---I~e~L~L~~l--~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 158 -FGSSGRPLLVLSCISQGDVKRMPCFY---LAHELHLNLL--NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp -SSCSCSCEEEEEEESSTTSCBCCHHH---HHHHTTGGGG--CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred -hhhCCCeEEEEeCCCcCccCCCCHHH---HHHHcCCcCC--CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 011378999999996 6643222111 1111 1111 1234689999999999999988887654
No 341
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.49 E-value=0.00089 Score=71.53 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
+++++|+|.+|+|||||+|.|++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999999998
No 342
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.47 E-value=0.00013 Score=71.51 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=46.8
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~ 570 (890)
++|+|||+||+|+...-. +...++.+|..+|+..+.||++.+.|++.++..|...+.+.
T Consensus 112 ~~piilv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 112 GANLLLALNKMDLAKSLG------IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp TCCEEEEEECHHHHHHTT------CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEhhhcccccc------chHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 478999999999863211 11235667788899999999999999999999999887663
No 343
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.43 E-value=8e-05 Score=82.41 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=23.1
Q ss_pred CceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 543 ASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 543 AsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
.--+|||+++..|++.++..+...++.
T Consensus 302 iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 456899999999999999988877764
No 344
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.42 E-value=0.00035 Score=75.76 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=65.9
Q ss_pred EEEEEEeCCCch-hHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649 423 TLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL 501 (890)
Q Consensus 423 ~viivlDlS~Pw-~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 501 (890)
.+++|+|++.|. +. +.+++|+..++.
T Consensus 82 ~vliV~d~~~p~~s~-~~l~~~l~~~~~---------------------------------------------------- 108 (302)
T 2yv5_A 82 RVIIVETLKMPEFNN-YLLDNMLVVYEY---------------------------------------------------- 108 (302)
T ss_dssp EEEEEECSTTTTCCH-HHHHHHHHHHHH----------------------------------------------------
T ss_pred EEEEEEECCCCCCCH-HHHHHHHHHHHh----------------------------------------------------
Confidence 789999999995 66 778899876542
Q ss_pred cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
.++|+|||+||+|+.. ++..+.+ ..+..++...|...+++|++.+.|++.|+.++...+.+
T Consensus 109 ---~~~~~ilV~NK~DL~~---~~~v~~~-~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~ 169 (302)
T 2yv5_A 109 ---FKVEPVIVFNKIDLLN---EEEKKEL-ERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICI 169 (302)
T ss_dssp ---TTCEEEEEECCGGGCC---HHHHHHH-HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEE
T ss_pred ---CCCCEEEEEEcccCCC---ccccHHH-HHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEE
Confidence 1478899999999973 2221222 34456667789999999999999999999998755444
No 345
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.36 E-value=0.00023 Score=75.35 Aligned_cols=56 Identities=18% Similarity=0.085 Sum_probs=45.1
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|+|||+||+|+...- .+...+..++..+|.+.|.||++.+.|++.+++.|...+
T Consensus 110 ~~pvilv~NK~Dl~~~~------~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 110 EKKVILAMTAIDEAKKT------GMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp TCCEEEEEECHHHHHHT------TCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCcc------chHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 58999999999986321 111235677888899999999999999999999998865
No 346
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.00043 Score=74.86 Aligned_cols=110 Identities=7% Similarity=-0.078 Sum_probs=68.6
Q ss_pred cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649 90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG 169 (890)
Q Consensus 90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~ 169 (890)
.+||.+++.++..| |. ++|++|+|+|.++.+++ + ...-+.++...+.+ .
T Consensus 194 ~GGQ~~lRplWr~Y----y~--~tdglIfVVDSsDreRl-e-ak~EL~eL~~mL~e----~------------------- 242 (312)
T 3l2o_B 194 QGSRYSVIPQIQKV----CE--VVDGFIYVANAEAHKRH-E-WQDEFSHIMAMTDP----A------------------- 242 (312)
T ss_dssp ---CCCCCHHHHHH----HH--HCSEEEECCBCBTTCCC-C-HHHHHHHHHHHHCH----H-------------------
T ss_pred CCCHHHHHHHHHHH----hc--CCCEEEEEecCCcHhHH-H-HHHHHHHHHHHhcc----h-------------------
Confidence 56889999999999 22 59999999999999886 3 22222222222211 0
Q ss_pred cccCCCCcEEEEeec-ccCCCCCCcchhhhhHHHH--HHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 170 LIRTFPVPLILIGGK-YDLFENLEPNKKRIAVQCL--RYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 170 li~~l~IPiIVVgNK-~Dl~~d~d~e~r~~i~~~l--r~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
....++|++|.+|| .|+...++..+ +.+.+ ..+ .....+..|||.+|+|+.+-.++|...+
T Consensus 243 -~~l~~apLLVfANKkQDlp~Ams~~E---I~e~L~L~~l--~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 243 -FGSSGRPLLVLSCISQGDVKRMPCFY---LAHELHLNLL--NHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp -HHCTTCCEEEEEEESSTTSCBCCHHH---HHHHTTGGGG--CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred -hhcCCCeEEEEeCCcccccCCCCHHH---HHHHcCCccC--CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 00126899999997 57743322111 11111 111 1234589999999999999999998775
No 347
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.25 E-value=0.00034 Score=74.85 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=43.9
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
|+|+|||++|+|+...-. +...+..++..+|+..|.||++.+.|++.++..|...+
T Consensus 107 ~~p~ilv~NK~Dl~~~~~------~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 107 GIPVTIALNMIDVLDGQG------KKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CSCEEEEEECHHHHHHTT------CCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCCEEEEEEChhhCCcCC------cHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 589999999999863211 11234566777899999999999999999999998764
No 348
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.24 E-value=0.00088 Score=72.64 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~fg~ 570 (890)
++|+|+|+||+|+..+ .+.+...+..++..+| +..|.+|++.+.|++.|+..|...+-..
T Consensus 122 ~~pvilV~NK~Dl~~~-----~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 122 NKPVIVVINKIDKIGP-----AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CCCEEEEEECGGGSSS-----GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred CCCEEEEEECccCCCC-----HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 4789999999999731 1233445566777787 8899999999999999999999887543
No 349
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.22 E-value=0.00011 Score=78.26 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS 95 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~ 95 (890)
.+++++|.+|||||||+|+|++... ...++.|..... ..... ...+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~--~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSL--ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEEC--TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEe--CCCEEEEECCCccc
Confidence 5999999999999999999998532 222222211100 00011 12589999999754
No 350
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.20 E-value=0.00023 Score=76.50 Aligned_cols=55 Identities=27% Similarity=0.305 Sum_probs=34.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT 94 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~ 94 (890)
..++|+++|.||||||||+|+|++... ...|+++.+... ... ...+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~----~~~--~~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW----VKV--GKELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC----EEE--TTTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE----EEe--CCCEEEEECcCcC
Confidence 468999999999999999999998531 222333322110 011 1258999999974
No 351
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.20 E-value=0.00045 Score=74.30 Aligned_cols=99 Identities=15% Similarity=0.019 Sum_probs=62.9
Q ss_pred EEEcCCCcc--hhhHHhhhhccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649 87 LWELGSGTS--RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTAD 163 (890)
Q Consensus 87 IwDlpG~~~--~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~ 163 (890)
|-..||+.. ++++..... .+|+|+.|+|+.+|.+..+ .+..|+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~-------~aDvVl~VvDAr~p~~~~~~~l~~~l--------------------------- 48 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLK-------LIDIVYELVDARIPMSSRNPMIEDIL--------------------------- 48 (282)
T ss_dssp ------CTTHHHHHHHHHGG-------GCSEEEEEEETTSTTTTSCHHHHHHC---------------------------
T ss_pred CcCCchHHHHHHHHHHHHHh-------hCCEEEEEEeCCCCCccCCHHHHHHH---------------------------
Confidence 445778642 233333332 4999999999999887621 233322
Q ss_pred cccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649 164 EHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 236 (890)
Q Consensus 164 ~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l 236 (890)
.+.|+++|+||+|+.. ...... ...+....|.+++++||+++.|++++.+.+...+
T Consensus 49 ----------~~kp~ilVlNK~DL~~------~~~~~~-~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 49 ----------KNKPRIMLLNKADKAD------AAVTQQ-WKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp ----------SSSCEEEEEECGGGSC------HHHHHH-HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ----------CCCCEEEEEECcccCC------HHHHHH-HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 1589999999999962 111222 2233345678999999999999999999887775
No 352
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.20 E-value=0.00048 Score=78.38 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=81.7
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
-.++|+..|...+...... .+.. .-++|+|+|.+. .++ +++..|..++++|....
T Consensus 85 ~~~iiDtpG~~~f~~~~~~--~~~~----aD~~ilVvDa~~-gsf-e~~~~~~~qt~~~~~~~----------------- 139 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMIT--GASQ----ADAAILVVSAKK-GEY-EAGMSVEGQTREHIILA----------------- 139 (435)
T ss_dssp EEEECCCSSSTTHHHHHHH--TSSC----CSEEEEEEECST-THH-HHHHSTTCHHHHHHHHH-----------------
T ss_pred EEEEEECCCcHHHHHHHHh--hhhh----cCEEEEEEECCC-Ccc-ccccccchHHHHHHHHH-----------------
Confidence 4689999998554432222 2221 227899999999 444 88888999999887640
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCC-cEEEEEecccccc-CCChhHHHHHHHHHHHHHHHcC-----Cc
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPV-PLILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG-----AS 544 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgi-PivVV~TK~D~~~-~~~~E~~d~Iq~~lR~fcl~yG-----As 544 (890)
..+|+ |+|||+||+|+.. +++++..+.+...++.++..+| +.
T Consensus 140 -------------------------------~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (435)
T 1jny_A 140 -------------------------------KTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVR 188 (435)
T ss_dssp -------------------------------HHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCE
T ss_pred -------------------------------HHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCce
Confidence 01244 5899999999974 2566777889999999999998 67
Q ss_pred eeEeccCChhhHH
Q psy11649 545 LLFHSSLDPGLVK 557 (890)
Q Consensus 545 L~ftS~K~~~n~~ 557 (890)
.|.+|++.+.|++
T Consensus 189 ~i~iSA~~g~~v~ 201 (435)
T 1jny_A 189 FVPVVAPSGDNIT 201 (435)
T ss_dssp EEECBTTTTBTTT
T ss_pred EEEeecccCcccc
Confidence 9999999999986
No 353
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.13 E-value=0.0001 Score=72.23 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=38.9
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|+|||+||+|+...-. .+|...++..|.||+|.+.|++.++..|...+
T Consensus 115 ~~p~ilv~NK~Dl~~~~~------------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 115 KLPITVVRNKADITGETL------------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TCCEEEEEECHHHHCCCC------------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCCEEEEEECccCCcchh------------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 489999999999853211 11223578899999999999999999998765
No 354
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.07 E-value=0.0019 Score=72.58 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=50.2
Q ss_pred CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCChhh------------------HHHHHH
Q psy11649 506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGL------------------VKRTRD 561 (890)
Q Consensus 506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~~n------------------~~~l~k 561 (890)
++| +|||+||+|+.. +.+..+.+...++.++..+| +..+++|++.+.| ++.|.+
T Consensus 127 ~ip~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~ 204 (405)
T 2c78_A 127 GVPYIVVFMNKVDMVD--DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLD 204 (405)
T ss_dssp TCCCEEEEEECGGGCC--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEECccccC--cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHH
Confidence 578 899999999974 45556778888999999988 5799999999998 778888
Q ss_pred HHhhhhc
Q psy11649 562 ILNHYAF 568 (890)
Q Consensus 562 yi~hr~f 568 (890)
.|...+-
T Consensus 205 ~l~~~lp 211 (405)
T 2c78_A 205 AIDEYIP 211 (405)
T ss_dssp HHHHHSC
T ss_pred HHHhhcC
Confidence 8877654
No 355
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.02 E-value=0.00073 Score=72.01 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=46.2
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
++|+|||+||+|+...-. +...+..++..+|...+.+|++.+.|++.|+..|...+..
T Consensus 112 ~~p~ivv~NK~Dl~~~~~------~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 112 GIPCIVALNMLDIAEKQN------IRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp TCCEEEEEECHHHHHHTT------EEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred CCCEEEEEECccchhhhh------HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 489999999999863211 1122466778889999999999999999999999887765
No 356
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.98 E-value=0.0022 Score=72.14 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=45.7
Q ss_pred cEEEEEeccccccCCChhHHHHHHHHHHHHHHHc---CCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y---GAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
|+|||+||+|+. +.+........++.++..+ ++..|++|++.+.|++.|+.+|...+-
T Consensus 131 ~iivviNK~Dl~---~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 131 NLIIVQNKVDVV---SKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp CEEEEEECGGGS---CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CEEEEEECcccc---chHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 789999999997 3444445555666666555 567999999999999999999997664
No 357
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.0028 Score=70.04 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=45.2
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
++|+|+|+||+|+.. .+.. ..++.++...|...+++|++.+.|++.++..|...+..
T Consensus 280 ~~piilV~NK~Dl~~---~~~~----~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 280 DLPFLVVINKIDVAD---EENI----KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TSCEEEEECCTTTCC---HHHH----HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCC---hHHH----HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 478999999999873 2221 23455666889999999999999999999999887753
No 358
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.98 E-value=0.00077 Score=71.29 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=43.7
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY 566 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr 566 (890)
++|+|||+||+|+...-. +...+..++...|+..|.+|++.+.+++.|+..|...
T Consensus 110 ~~pvilv~NK~Dl~~~~~------~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 110 GKPVVVALNMMDIAEHRG------ISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CSCEEEEEECHHHHHHTT------CEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCCEEEEEEChhcCCcCC------cHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 689999999999974211 1112445667779999999999999999999999876
No 359
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.95 E-value=0.00076 Score=76.72 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=58.4
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC---CCCCcceecccCC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS---SHLASAVNFDYNK 582 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg---~~~~~~~~v~~~d 582 (890)
++|+|||+||+|+...-.. +.++.++.++|+..+++|+|++.|++.++..|...+.. +++ ...++.++|
T Consensus 140 ~~piIvV~NK~Dl~~~~~~-------~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~~e~~l-~~dLv~~gd 211 (423)
T 3qq5_A 140 EIPFVVVVNKIDVLGEKAE-------ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPY-LGDLIDGGD 211 (423)
T ss_dssp TCCEEEECCCCTTTTCCCT-------HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCCCCCCS-CSCCCCTTC
T ss_pred CCCEEEEEeCcCCCCccHH-------HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhhccCcc-hhhccccCc
Confidence 3789999999999854333 44566778899999999999999999999999999843 222 234555566
Q ss_pred ceEecCcCCc
Q psy11649 583 PIFVPFGTDS 592 (890)
Q Consensus 583 ~ifIPaGwDs 592 (890)
.+....-.|.
T Consensus 212 ~v~lv~pid~ 221 (423)
T 3qq5_A 212 LVILVVPIDL 221 (423)
T ss_dssp CEEEECCCSC
T ss_pred eEEEEeeccc
Confidence 6665554443
No 360
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.93 E-value=0.0016 Score=74.06 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=42.9
Q ss_pred cEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCChhhHHH
Q psy11649 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR 558 (890)
Q Consensus 508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~~n~~~ 558 (890)
|+|||+||+|+.. .+++..+.+...++.++..+| +..|.+|++.+.|++.
T Consensus 159 ~iIvviNK~Dl~~-~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 159 HIVVAINKMDLNG-FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp EEEEEEECTTTTT-SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred eEEEEEEcCcCCc-ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 5899999999973 345667778899999999999 7889999999999986
No 361
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.88 E-value=0.0032 Score=70.67 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=50.1
Q ss_pred CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCChhh----------HHHHHHHHhhhhc
Q psy11649 506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGL----------VKRTRDILNHYAF 568 (890)
Q Consensus 506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~~n----------~~~l~kyi~hr~f 568 (890)
|+| +|||+||+|+.. +.+..+.+...++.++..+| +..|++|++.+.| ++.|.++|...+-
T Consensus 118 ~vp~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 118 GVEHVVVYVNKADAVQ--DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TCCCEEEEEECGGGCS--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CCCeEEEEEECcccCC--CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 578 789999999974 45566778888999999988 5889999999876 7888888887654
No 362
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.78 E-value=0.016 Score=66.30 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc------CC------CCCCCC-----------ccceeEEEEEEecc------------
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE------KN------DTPKPT-----------LALEYIYARKSGKT------------ 79 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~------~~------~~~kpt-----------igvdY~f~~~~g~~------------ 79 (890)
..-|+++|.+||||||++.+|.. .. +.+.+. .++.+ +....+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-FGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-ECCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-EecCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999974 11 122221 12221 00000000
Q ss_pred -ccceEEEEEEcCCCcch-hhHHhhh-h-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649 80 -VMKDICHLWELGSGTSR-LEVASLF-S-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGS 155 (890)
Q Consensus 80 -~~k~~l~IwDlpG~~~~-~~Li~~~-r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~ 155 (890)
..+..+-|+||+|.... ..+.... . .... .++.+++|+|.+..... +. ..+.+.+ .
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~---~pd~vlLVvDA~~gq~a---~~-~a~~f~~---~---------- 238 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI---HPHEVILVIDGTIGQQA---YN-QALAFKE---A---------- 238 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH---CCSEEEEEEEGGGGGGH---HH-HHHHHHH---S----------
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhh---cCceEEEEEeCCCchhH---HH-HHHHHHh---h----------
Confidence 01135889999995432 1122111 0 0112 38899999998874332 11 1111111 1
Q ss_pred cccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHH
Q psy11649 156 FEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 156 l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~L 228 (890)
--+..||.||.|.. .+.. .+..++...|.++.|++. |++++.|
T Consensus 239 -------------------~~i~gVIlTKlD~~------~~gG---~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 239 -------------------TPIGSIIVTKLDGS------AKGG---GALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp -------------------CTTEEEEEECCSSC------SSHH---HHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred -------------------CCCeEEEEECCCCc------cccc---HHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 12457899999984 2222 234555678999999985 7777655
No 363
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0064 Score=59.66 Aligned_cols=56 Identities=20% Similarity=0.116 Sum_probs=34.9
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCC-CchhHHHHHHHHHHHHHHH
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS-RLNSLWTEAETFLAKFRAI 450 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS-~Pw~l~~sL~~W~~~~r~~ 450 (890)
-..+|+..|...+...+.- .+....-..-++|+|+|.+ .+.++ +.+..|+..+...
T Consensus 92 ~~~l~Dt~G~~~~~~~~~~--~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~ 148 (193)
T 2ged_A 92 GVTLVDFPGHVKLRYKLSD--YLKTRAKFVKGLIFMVDSTVDPKKL-TTTAEFLVDILSI 148 (193)
T ss_dssp TCSEEEETTCCBSSCCHHH--HHHHHGGGEEEEEEEEETTCCHHHH-HHHHHHHHHHHHH
T ss_pred eEEEEECCCCchHHHHHHH--HHHhhcccCCEEEEEEECCCCchhH-HHHHHHHHHHHhh
Confidence 3579999998666544333 1211101124799999999 77776 6677776655543
No 364
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.61 E-value=0.0028 Score=67.02 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=44.7
Q ss_pred CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
+|+|||+||+|+... +.+...++.++..+|++.+.||++.+.+++.++..|...+-+
T Consensus 110 ~p~ilv~NK~Dl~~~------~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 110 KNIILVLNKFDLLKK------KGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CSEEEEEECHHHHHH------HTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred CCEEEEEEChhcCcc------cccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 789999999998631 111112566777789999999999999999999999887643
No 365
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.58 E-value=0.011 Score=67.28 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|+|.+||||||++++|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999976
No 366
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.56 E-value=0.0036 Score=72.29 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=52.1
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc----CCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y----GAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
|+|+|||+||+|+. +++..+.+.+.++.++..+ ++..+.+|++.+.|++.|+.+|...+-
T Consensus 125 ~ip~IvviNK~Dl~---~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 125 NIPIIVVITKSDNA---GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCCBCEEEECTTSS---CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCcc---cchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 58889999999997 3566777888889988877 688999999999999999999988764
No 367
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.41 E-value=0.011 Score=66.05 Aligned_cols=58 Identities=9% Similarity=-0.117 Sum_probs=47.3
Q ss_pred CCcE-EEEEe-ccccccCCChhHHHHHHHHHHHHHHHcC---CceeE--eccCC---hhhHHHHHHHHhhhh
Q psy11649 506 PVPL-ILIGG-KYDLFENLEPNKKRIAVQCLRYLAHVNG---ASLLF--HSSLD---PGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPi-vVV~T-K~D~~~~~~~E~~d~Iq~~lR~fcl~yG---AsL~f--tS~K~---~~n~~~l~kyi~hr~ 567 (890)
|+|. |||+| |+|+ +.+..+.+...++.++..+| +..|+ +|++. +.|++.|++.|...+
T Consensus 111 ~i~~~ivvvNNK~Dl----~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 111 GFKHGIIALTRSDST----HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp TCCEEEEEECCGGGS----CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred CCCeEEEEEEeccCC----CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 5677 89999 9998 34555666778888887776 67899 99999 999999999888764
No 368
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.27 E-value=0.0082 Score=63.74 Aligned_cols=76 Identities=9% Similarity=0.002 Sum_probs=52.4
Q ss_pred cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL 191 (890)
Q Consensus 112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~ 191 (890)
++|+|+.|+|+.+|.+. . .+...++ ++|.++|.||+|+..
T Consensus 21 ~~D~vl~VvDar~P~~~--------~---------------------------~~~l~ll---~k~~iivlNK~DL~~-- 60 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFAT--------S---------------------------AYGVDFS---RKETIILLNKVDIAD-- 60 (262)
T ss_dssp TCSEEEEEEETTSTTTT--------S---------------------------CTTSCCT---TSEEEEEEECGGGSC--
T ss_pred hCCEEEEEeeCCCCCcC--------c---------------------------ChHHHhc---CCCcEEEEECccCCC--
Confidence 49999999999998774 0 0111111 689999999999962
Q ss_pred CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649 192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 233 (890)
Q Consensus 192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~ 233 (890)
........ .+....|.++ ++||+++.|+++|.+.+.
T Consensus 61 ----~~~~~~~~-~~~~~~g~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 61 ----EKTTKKWV-EFFKKQGKRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp ----HHHHHHHH-HHHHHTTCCE-EECCTTSCHHHHHHHHCC
T ss_pred ----HHHHHHHH-HHHHHcCCeE-EEECCCCcCHHHHHHHHH
Confidence 11122222 2334567888 999999999999876653
No 369
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.26 E-value=0.0068 Score=71.64 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=38.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC--CC-----CCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND--TP-----KPTLALEYIYARKSGKTVMKDICHLWELGSGTS 95 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~-----kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~ 95 (890)
....|+|+|.||||||||+|+|++... .. ..|.|+- .+ ........+..+.++||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~-~~-~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW-MW-CVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEE-EE-EEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEE-Ee-ecccccCCCceEEEecCCCcCc
Confidence 367899999999999999999998532 11 1122221 11 1111112234799999999764
No 370
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.26 E-value=0.0077 Score=68.58 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=46.9
Q ss_pred CCCc-EEEEEeccccc-cCCChhHHHHHHHHHHHHHHHcCC------ceeEeccCChhhHHHHH
Q psy11649 505 FPVP-LILIGGKYDLF-ENLEPNKKRIAVQCLRYLAHVNGA------SLLFHSSLDPGLVKRTR 560 (890)
Q Consensus 505 lgiP-ivVV~TK~D~~-~~~~~E~~d~Iq~~lR~fcl~yGA------sL~ftS~K~~~n~~~l~ 560 (890)
+|+| +|||+||.|+. .++..+..+.+...++.|+..+|. ..|++|++.+.|++.+.
T Consensus 153 ~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 153 AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS 216 (439)
T ss_pred cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc
Confidence 3677 99999999996 466677788889999999888774 68999999999999843
No 371
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.23 E-value=0.0053 Score=67.82 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=65.4
Q ss_pred eEEEEEEeCCC---chhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccc
Q psy11649 422 FTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFED 498 (890)
Q Consensus 422 ~~viivlDlS~---Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 498 (890)
-++|+|+|+|. +..+ +.++.|...++.+...
T Consensus 238 d~ll~VvD~s~~~~~~~~-~~~~~~~~eL~~~~~~--------------------------------------------- 271 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPY-DDYLTINQELSEYNLR--------------------------------------------- 271 (342)
T ss_dssp CEEEEEEESSCSSCCCHH-HHHHHHHHHHHHSCSS---------------------------------------------
T ss_pred cEEEEEEECCcccccChH-HHHHHHHHHHHHhhhh---------------------------------------------
Confidence 48999999998 5544 7888887766552110
Q ss_pred ccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649 499 KGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFSS 570 (890)
Q Consensus 499 ~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~fg~ 570 (890)
...+|+|||+||+|+.. .+ ..+..++..++ ...|.+|++...|++.|+..|...+...
T Consensus 272 -----l~~~p~ilV~NK~Dl~~---~~------e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 272 -----LTERPQIIVANKMDMPE---AA------ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp -----TTTSCBCBEEECTTSTT---HH------HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred -----hcCCCEEEEEECccCCC---CH------HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 02478899999999863 11 23445666666 5789999999999999999999888653
No 372
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.18 E-value=0.017 Score=66.21 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=44.2
Q ss_pred CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCChhhHHH
Q psy11649 506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR 558 (890)
Q Consensus 506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~~n~~~ 558 (890)
|+| +|||+||+|+. +.+++..+.+...++.++..+| +..|.+|++.+.|++.
T Consensus 144 ~v~~iivviNK~Dl~-~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 144 GVRQLIVAVNKMDSV-KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp TCCEEEEEEECGGGG-TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCCeEEEEEEccccc-cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 576 99999999998 4456777888899999998888 6899999999999863
No 373
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.14 E-value=0.038 Score=65.38 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=41.0
Q ss_pred CCcEEEEEeccccccCCCh---------------hHHHHHH---HHHHHHHHHcC---------------CceeEeccCC
Q psy11649 506 PVPLILIGGKYDLFENLEP---------------NKKRIAV---QCLRYLAHVNG---------------ASLLFHSSLD 552 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~---------------E~~d~Iq---~~lR~fcl~yG---------------AsL~ftS~K~ 552 (890)
++|+|||+||+|+...+.. +-++.+. ..+......+| .+.+++|++.
T Consensus 122 ~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~t 201 (594)
T 1g7s_A 122 RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAIT 201 (594)
T ss_dssp TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTT
T ss_pred CCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccC
Confidence 4899999999999754432 1111111 12222223333 2689999999
Q ss_pred hhhHHHHHHHHhhhh
Q psy11649 553 PGLVKRTRDILNHYA 567 (890)
Q Consensus 553 ~~n~~~l~kyi~hr~ 567 (890)
+.+++.|...|...+
T Consensus 202 G~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 202 GEGIPELLTMLMGLA 216 (594)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHhhc
Confidence 999999999988754
No 374
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.13 E-value=0.016 Score=62.58 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=78.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc------CC------CCCCCC-----------ccceeEEEE---E------E--eccc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE------KN------DTPKPT-----------LALEYIYAR---K------S--GKTV 80 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~------~~------~~~kpt-----------igvdY~f~~---~------~--g~~~ 80 (890)
...++++|.+|+||||++..|.. +. +.+.+. .++++.... . . ....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45688899999999999999874 11 111111 112110000 0 0 0000
Q ss_pred -cceEEEEEEcCCCcc--hh-hHHhhh-h-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649 81 -MKDICHLWELGSGTS--RL-EVASLF-S-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRG 154 (890)
Q Consensus 81 -~k~~l~IwDlpG~~~--~~-~Li~~~-r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~ 154 (890)
.+..+-|+||||... .. .+.... . .... .+|.+++|+|.+.... .+ +.++....
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~---~~d~vllVvda~~g~~---~~----~~~~~~~~---------- 237 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAI---KPDEVTLVIDASIGQK---AY----DLASKFNQ---------- 237 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHH---CCSEEEEEEEGGGGGG---HH----HHHHHHHH----------
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHh---cCCEEEEEeeCCchHH---HH----HHHHHHHh----------
Confidence 223588999999866 32 222111 0 0012 3899999999875322 11 11111111
Q ss_pred ccccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHH
Q psy11649 155 SFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRT 228 (890)
Q Consensus 155 ~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~L 228 (890)
.+| ..+|.||+|.. .+. ..+..++...|.++.+++ .|++++.+
T Consensus 238 --------------------~~~i~gvVlnk~D~~------~~~---g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 238 --------------------ASKIGTIIITKMDGT------AKG---GGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp --------------------TCTTEEEEEECGGGC------TTH---HHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred --------------------hCCCCEEEEeCCCCC------cch---HHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 245 67899999973 221 234457778899999887 56666554
No 375
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.13 E-value=0.0031 Score=68.72 Aligned_cols=85 Identities=16% Similarity=0.067 Sum_probs=54.6
Q ss_pred ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649 111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN 190 (890)
Q Consensus 111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d 190 (890)
.++|.+++|+|+.+|..-.+.+.+++..+ ...++|.+||.||+|+..+
T Consensus 85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~--------------------------------~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLV--------------------------------EANDIQPIICITKMDLIED 132 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHH--------------------------------HTTTCEEEEEEECGGGCCC
T ss_pred HhCCEEEEEEeCCCCCCCHHHHHHHHHHH--------------------------------HHCCCCEEEEEECCccCch
Confidence 36999999999998776423344443211 1236899999999999631
Q ss_pred CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649 191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRD 230 (890)
Q Consensus 191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~ 230 (890)
+..+...+...+.....|..++++||+++.|+++|++
T Consensus 133 ---~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 133 ---QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred ---hhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 1100011223334445588999999999988876644
No 376
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.13 E-value=0.01 Score=70.38 Aligned_cols=108 Identities=10% Similarity=-0.004 Sum_probs=73.8
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..|+|+..|...+.....- .+... -.+|+|+|.+...+. .+++.|....+
T Consensus 72 ~l~liDTPGh~dF~~ev~~--~l~~a----D~aILVVDa~~gv~~-qt~~~~~~~~~----------------------- 121 (599)
T 3cb4_D 72 QLNFIDTPGHVDFSYEVSR--SLAAC----EGALLVVDAGQGVEA-QTLANCYTAME----------------------- 121 (599)
T ss_dssp EEEEEECCCCGGGHHHHHH--HHHHC----SEEEEEEETTTCCCT-HHHHHHHHHHH-----------------------
T ss_pred EEEEEECCCchHHHHHHHH--HHHHC----CEEEEEEECCCCCCH-HHHHHHHHHHH-----------------------
Confidence 5689999998655543333 23222 268999999998776 66776754321
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC---ceeEe
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFH 548 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA---sL~ft 548 (890)
.++|+|+|+||+|+... + .+.+. ..++..+|. ..+++
T Consensus 122 ---------------------------------~~ipiIvViNKiDl~~a-~---~~~v~---~ei~~~lg~~~~~vi~v 161 (599)
T 3cb4_D 122 ---------------------------------MDLEVVPVLNKIDLPAA-D---PERVA---EEIEDIVGIDATDAVRC 161 (599)
T ss_dssp ---------------------------------TTCEEEEEEECTTSTTC-C---HHHHH---HHHHHHTCCCCTTCEEE
T ss_pred ---------------------------------CCCCEEEeeeccCcccc-c---HHHHH---HHHHHHhCCCcceEEEe
Confidence 14789999999999742 1 12222 223334565 48999
Q ss_pred ccCChhhHHHHHHHHhhhhcC
Q psy11649 549 SSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 549 S~K~~~n~~~l~kyi~hr~fg 569 (890)
|++.+.|++.|+..|...+-.
T Consensus 162 SAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 162 SAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CTTTCTTHHHHHHHHHHHSCC
T ss_pred ecccCCCchhHHHHHhhcCCC
Confidence 999999999999999987653
No 377
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.08 E-value=0.021 Score=65.02 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..-|+++|.+||||||++..|..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999974
No 378
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.08 E-value=0.01 Score=66.78 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=36.3
Q ss_pred cEEEEEeccccccCCC-hhHHHHHHHHHHHHHHH---cCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 508 PLILIGGKYDLFENLE-PNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 508 PivVV~TK~D~~~~~~-~E~~d~Iq~~lR~fcl~---yGAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
|+|||+||+|+...-. .+..+.| +.++.. .++..|++|++.+.|++.|+.+|...+-
T Consensus 137 ~iivv~NK~Dl~~~~~~~~~~~~i----~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 137 KIIIVQNKIDLVDEKQAEENYEQI----KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CEEEEEECTTSSCTTTTTTHHHHH----HHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred eEEEEEEccCCCCHHHHHHHHHHH----HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 7899999999974221 2233444 444444 3678999999999999999999998664
No 379
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.07 E-value=0.015 Score=67.14 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=63.5
Q ss_pred eEEEEeCCCcccccccccc-cccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649 393 CHLWELGSGTSRLEVASLF-SSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA 470 (890)
Q Consensus 393 ~~vW~L~G~~~~~~Ll~~~-~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~ 470 (890)
+.+|+..|.....+++.-+ ...+...+ ..-++++|+|.+.|.+. +.++.|...++.
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-~~~~~~~~~l~~--------------------- 340 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD-DELTEIRELKAA--------------------- 340 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSG-GGHHHHHHHHHH---------------------
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch-hhhHHHHHHHHh---------------------
Confidence 6899999976554443210 00011111 23379999999999876 333333332211
Q ss_pred cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649 471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS 550 (890)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~ 550 (890)
+. ++|+|||+||+|+...-+.+. ..++.......+.+|+
T Consensus 341 -------------------------l~--------~~piIvV~NK~Dl~~~~~~~~--------~~l~~~~~~~~i~vSA 379 (476)
T 3gee_A 341 -------------------------HP--------AAKFLTVANKLDRAANADALI--------RAIADGTGTEVIGISA 379 (476)
T ss_dssp -------------------------CT--------TSEEEEEEECTTSCTTTHHHH--------HHHHHHHTSCEEECBT
T ss_pred -------------------------cC--------CCCEEEEEECcCCCCccchhH--------HHHHhcCCCceEEEEE
Confidence 00 378999999999975322211 2222222368899999
Q ss_pred CChhhHHHHHHHHhhhhc
Q psy11649 551 LDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 551 K~~~n~~~l~kyi~hr~f 568 (890)
|.+.|++.|++.|...+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999886
No 380
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.96 E-value=0.019 Score=63.88 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=44.1
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc---CCceeEeccCChhhHHHHHHHHhhhhcCCCC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYAFSSHL 572 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y---GAsL~ftS~K~~~n~~~l~kyi~hr~fg~~~ 572 (890)
++|+|+|++|+|+...- . ......+..++..+ +..++++|++.+.+++.|++.|...+...++
T Consensus 292 ~~p~ilV~NK~Dl~~~~---~-~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 292 GKPILVTLNKIDKINGD---L-YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp SCCEEEEEECGGGCCSC---H-HHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEECCCCCCch---H-HHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 37899999999997432 1 11122233444444 3368999999999999999999988776444
No 381
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=95.93 E-value=0.025 Score=63.59 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=43.6
Q ss_pred cEEEEEeccccccCCChhHHHHHHHHHHHHHHH---cCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~---yGAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
|+|||+||+|+.. .+........++.++.. .++..|++|++.+.|++.|+.+|...+-
T Consensus 139 ~iivviNK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 139 NIIIAQNKIELVD---KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CEEEEEECGGGSC---HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cEEEEEECccCCC---HHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6899999999973 23222333445556554 4678999999999999999999998664
No 382
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.90 E-value=0.013 Score=69.37 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=74.2
Q ss_pred eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649 392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD 471 (890)
Q Consensus 392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~ 471 (890)
..++|+..|...+.....- .+... -.+|+|+|-+.+.+. .+++.|....+
T Consensus 74 ~inliDTPGh~dF~~ev~r--~l~~a----D~aILVVDa~~gv~~-qt~~~~~~a~~----------------------- 123 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSYEVSR--ALAAC----EGALLLIDASQGIEA-QTVANFWKAVE----------------------- 123 (600)
T ss_dssp EEEEECCCCSGGGHHHHHH--HHHTC----SEEEEEEETTTBCCH-HHHHHHHHHHH-----------------------
T ss_pred EEEEEECCCcHhHHHHHHH--HHHhC----CEEEEEEECCCCccH-HHHHHHHHHHH-----------------------
Confidence 5689999998655443333 23221 268899999999876 66777754220
Q ss_pred ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC---ceeEe
Q psy11649 472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFH 548 (890)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA---sL~ft 548 (890)
.++|+|+|+||+|+... + .+. .+..++..+|. ..+++
T Consensus 124 ---------------------------------~~ipiIvviNKiDl~~a-~---~~~---v~~el~~~lg~~~~~vi~v 163 (600)
T 2ywe_A 124 ---------------------------------QDLVIIPVINKIDLPSA-D---VDR---VKKQIEEVLGLDPEEAILA 163 (600)
T ss_dssp ---------------------------------TTCEEEEEEECTTSTTC-C---HHH---HHHHHHHTSCCCGGGCEEC
T ss_pred ---------------------------------CCCCEEEEEeccCcccc-C---HHH---HHHHHHHhhCCCcccEEEE
Confidence 14889999999998632 1 112 22334444565 38999
Q ss_pred ccCChhhHHHHHHHHhhhhcC
Q psy11649 549 SSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 549 S~K~~~n~~~l~kyi~hr~fg 569 (890)
|++.+.|++.|+..|...+-.
T Consensus 164 SAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 164 SAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp BTTTTBSHHHHHHHHHHHSCC
T ss_pred EeecCCCchHHHHHHHHhccc
Confidence 999999999999999987754
No 383
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.87 E-value=0.029 Score=60.66 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=41.6
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
++|+|+|+||+|+... +. + +...++.+ ...+..+.+|++.+.|++.|+..|...+..
T Consensus 117 ~~p~ilV~NK~Dl~~~---~~-~-~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKY---PE-E-AMKAYHEL--LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TSCEEEEEECGGGCSS---HH-H-HHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEEECcccCCc---hH-H-HHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 4899999999999732 11 1 33444444 123578999999999999999999887643
No 384
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.86 E-value=0.019 Score=72.27 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=49.9
Q ss_pred CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCCh--------hhHHHHHHHHhhhhc
Q psy11649 506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDP--------GLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~--------~n~~~l~kyi~hr~f 568 (890)
|+| +|||+||+|+.. +.+..+.+...++.++..+| ++.|++|++.+ .+++.|+..|...+-
T Consensus 411 gIP~IIVVINKiDLv~--d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 411 GVPYIIVFLNKCDMVD--DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TCSCEEEEEECCTTCC--CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred CCCeEEEEEeeccccc--chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 578 899999999974 34556778888999999988 57999999998 568888888887553
No 385
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.62 E-value=0.027 Score=64.78 Aligned_cols=49 Identities=16% Similarity=-0.030 Sum_probs=41.2
Q ss_pred cEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-----ceeEeccCChhhHH
Q psy11649 508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-----SLLFHSSLDPGLVK 557 (890)
Q Consensus 508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-----sL~ftS~K~~~n~~ 557 (890)
|+|||+||+|+.. .+.+..+.+...++.+...+|. ..|.+|++.+.|++
T Consensus 173 ~iIvviNK~Dl~~-~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~ 226 (483)
T 3p26_A 173 NLIIAMNKMDNVD-WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 226 (483)
T ss_dssp CEEEEEECGGGGT-TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSS
T ss_pred cEEEEEECcCccc-chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcc
Confidence 5999999999973 4567778888889988887765 67999999999987
No 386
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=95.59 E-value=0.013 Score=67.12 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=45.5
Q ss_pred CCCc-EEEEEeccccc-cCCChhHHHHHHHHHHHHHHHc-C------CceeEeccCChhhHHHH
Q psy11649 505 FPVP-LILIGGKYDLF-ENLEPNKKRIAVQCLRYLAHVN-G------ASLLFHSSLDPGLVKRT 559 (890)
Q Consensus 505 lgiP-ivVV~TK~D~~-~~~~~E~~d~Iq~~lR~fcl~y-G------AsL~ftS~K~~~n~~~l 559 (890)
+|+| +|||+||+|+. .+++++..+.+...++.++..+ | +..|.+|++.+.|++.+
T Consensus 179 ~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 179 QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 3687 99999999997 3566777888888899998887 5 55899999999998753
No 387
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.024 Score=67.40 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=43.7
Q ss_pred CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-----ceeEeccCChhhHHHH
Q psy11649 506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-----SLLFHSSLDPGLVKRT 559 (890)
Q Consensus 506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-----sL~ftS~K~~~n~~~l 559 (890)
|+| +|||+||+|+.. ...+..+.+...++.++..+|+ ..|.+|++.+.|++.+
T Consensus 304 gi~~iIVVvNKiDl~~-~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 304 GIHNLIIAMNKMDNVD-WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCCEEEEEEECTTTTT-TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred CCCeEEEEEecccccc-hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 454 999999999973 4567778888999999888875 7899999999999743
No 388
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.49 E-value=0.055 Score=60.16 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHH
Q psy11649 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDI 231 (890)
Q Consensus 175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~ 231 (890)
++|.+||.||+|+.. ++........+ ......|.+++++||+++.|++.+...
T Consensus 160 ~~~~iivlNK~DL~~---~~~~~~~~~~~-~~y~~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLD---DEGMDFVNEQM-DIYRNIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp TCEEEEEEECGGGCC---HHHHHHHHHHH-HHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred CCCEEEEEECccCCC---chhHHHHHHHH-HHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence 688999999999963 11111122222 223456889999999999999998654
No 389
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.31 E-value=0.038 Score=64.49 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=22.5
Q ss_pred ceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
+.||+|++.+.+++.|...|...+-
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p 276 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAP 276 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred EEEeccccCCccHHHHHHHHHHhCC
Confidence 6799999999999999999988764
No 390
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.25 E-value=0.051 Score=64.45 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.|+|+|++|||||||++.++|-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999984
No 391
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.17 E-value=0.016 Score=66.62 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=40.3
Q ss_pred CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
.|+|||+||+|+...-..+ .++.++ .+...+.+|+|.+.+++.|++.|...+..
T Consensus 331 ~piivV~NK~Dl~~~~~~~-------~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQLIT-------SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp SCEEEEEECTTSSCGGGST-------TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCcchhhH-------HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4789999999997432211 111112 46788999999999999999999998875
No 392
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=94.91 E-value=0.056 Score=62.35 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=42.0
Q ss_pred CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
+|+|||+||+|+....+. +. ++.++ .+++..|++|+|.+.|++.|+..|...+++
T Consensus 351 ~piivV~NK~DL~~~~~~---~~----~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 351 KRYLVVINKVDVVEKINE---EE----IKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp SSEEEEEEECSSCCCCCH---HH----HHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred CCEEEEEECcccccccCH---HH----HHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 689999999999754332 12 22332 256789999999999999999999988764
No 393
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.86 E-value=0.019 Score=57.98 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=31.2
Q ss_pred CCcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 1 MGPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 1 ~~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
|+.+.+.+.+.+.+... . . ....|+|+|.+|||||||++.|.+
T Consensus 2 m~~~~~~~~~~~~~~~~---~-~----------~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 2 MTLAALCQGVLERLDPR---Q-P----------GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCHHHHHHHHHHHSCTT---C-C----------SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhc---C-C----------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 55566777666665433 1 1 124799999999999999999987
No 394
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.67 E-value=0.097 Score=53.71 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=37.7
Q ss_pred CcEEEEEeccccccCCChhHHHHHH---HHHHHHHHHcCCceeEeccCC-----hhhHHHHHHHHhhhh
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAV---QCLRYLAHVNGASLLFHSSLD-----PGLVKRTRDILNHYA 567 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq---~~lR~fcl~yGAsL~ftS~K~-----~~n~~~l~kyi~hr~ 567 (890)
.|+|||+||+|.... .+..++++ ..++.++..+|...++.+.+. ..++..|.+.|...+
T Consensus 146 ~~~iiv~nK~D~~~~--~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 146 SFMILIFTRKDDLGD--TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp GGEEEEEECGGGC--------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCccCCc--ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 578999999999743 22234443 468888999999887777663 257777777665554
No 395
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.61 E-value=0.009 Score=69.88 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=41.2
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
++|+|||+||+|+...-..+....+.. ...+|..+| ...|++|++.+.|++.|+..|...+-
T Consensus 104 ~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 104 HVPIVLAINKCDKAEADPEKVKKELLA-YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp TCCEEECCBSGGGTTTSCCSSSSHHHH-TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred CCcEEEEEecccccccchHHHHHHHHh-hhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 589999999999863211111111111 112233444 47899999999999999999987764
No 396
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.54 E-value=0.19 Score=52.13 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=41.8
Q ss_pred CcEEEEEe-ccccccCCChhHHHHHH----HHHHHHHHHcCCce-----eEeccCChhhHHHHHHHHhhhhcC
Q psy11649 507 VPLILIGG-KYDLFENLEPNKKRIAV----QCLRYLAHVNGASL-----LFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 507 iPivVV~T-K~D~~~~~~~E~~d~Iq----~~lR~fcl~yGAsL-----~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
.|+|||+| |+|+.. .+..+++. ..++.++..++..+ +.+|++.+.+++.+++.|...+-.
T Consensus 139 ~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 139 GHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 45566666 999973 22334443 44566666666543 679999999999999999877643
No 397
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.42 E-value=0.012 Score=62.41 Aligned_cols=57 Identities=19% Similarity=0.112 Sum_probs=38.2
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccCChhhHHHHHHHHhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNH 565 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K~~~n~~~l~kyi~h 565 (890)
++|+|+|+||+|+...-. +..+.++..+ +++..| +.++.+|++.+.|++.++..|..
T Consensus 192 ~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~--~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 192 GQRTIGVITKLDLMDEGT-DARDVLENKL--LPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CSSEEEEEECGGGSCTTC-CCHHHHTTCS--SCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred CCeEEEEEEccccCCCCc-hHHHHHhCCc--CcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 579999999999984322 1123333211 223335 57889999999999988887764
No 398
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.85 E-value=0.19 Score=51.88 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=40.5
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHH-------H-----------------HHHHcC--CceeEeccCChhhHHHH
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLR-------Y-----------------LAHVNG--ASLLFHSSLDPGLVKRT 559 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR-------~-----------------fcl~yG--AsL~ftS~K~~~n~~~l 559 (890)
++|++||+||+|+.... ..+.+...++ . ++..++ +..+.+|++.+.|++.|
T Consensus 171 ~~p~~iv~NK~D~~~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEE---EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp TSCEEEEECCGGGCCHH---HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred CCCeEEEEecccccccc---cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence 47889999999997432 1111222111 1 134444 58999999999999999
Q ss_pred HHHHhhhhc
Q psy11649 560 RDILNHYAF 568 (890)
Q Consensus 560 ~kyi~hr~f 568 (890)
+++|...+.
T Consensus 248 ~~~i~~~~~ 256 (262)
T 1yrb_A 248 ETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999976653
No 399
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.68 E-value=0.033 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.+++|+|++|||||||++.+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999873
No 400
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.61 E-value=0.025 Score=64.84 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=56.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccc-eEEEEEEcCCCcch--hhHH--hhh--hc
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMK-DICHLWELGSGTSR--LEVA--SLF--SS 105 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k-~~l~IwDlpG~~~~--~~Li--~~~--r~ 105 (890)
....|+++|.+||||||+.++|...-. ...++..+... ......... ....+||..|...+ .... ... ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d--~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG--QYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH--HHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc--hhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999986311 11122221100 000010011 23578999997322 2221 011 01
Q ss_pred cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHH
Q psy11649 106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRA 141 (890)
Q Consensus 106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e 141 (890)
..+. +..+.++|+|.++... +....|.+.+++
T Consensus 116 ~~l~--~~~G~~vV~D~tn~~~--~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLS--EEGGHVAVFDATNTTR--ERRAMIFNFGEQ 147 (469)
T ss_dssp HHHH--TTCCSEEEEESCCCSH--HHHHHHHHHHHH
T ss_pred HHHH--hCCCCEEEEeCCCCCH--HHHHHHHHHHHh
Confidence 1121 3678899999999854 566777765544
No 401
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.41 E-value=0.24 Score=56.01 Aligned_cols=91 Identities=21% Similarity=0.168 Sum_probs=66.3
Q ss_pred eEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649 422 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL 501 (890)
Q Consensus 422 ~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 501 (890)
-.++.++|++ + ..+.++..|.+++......+
T Consensus 237 ~~lL~vvDls-~-~~~~~ls~g~~el~~la~aL----------------------------------------------- 267 (416)
T 1udx_A 237 RVLLYVLDAA-D-EPLKTLETLRKEVGAYDPAL----------------------------------------------- 267 (416)
T ss_dssp SEEEEEEETT-S-CHHHHHHHHHHHHHHHCHHH-----------------------------------------------
T ss_pred HhhhEEeCCc-c-CCHHHHHHHHHHHHHHhHHh-----------------------------------------------
Confidence 4789999998 3 34477888877776543210
Q ss_pred cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcCCC
Q psy11649 502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 571 (890)
Q Consensus 502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~ 571 (890)
...|.|||++|.|.... +. ...++..+...|.++|++|++...+++.|+..|...+...+
T Consensus 268 ---~~~P~ILVlNKlDl~~~---~~----~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 268 ---LRRPSLVALNKVDLLEE---EA----VKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp ---HHSCEEEEEECCTTSCH---HH----HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred ---hcCCEEEEEECCChhhH---HH----HHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 02577999999998742 22 23345555667999999999999999999999999887543
No 402
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.23 E-value=1.2 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFL 56 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~ 56 (890)
...|+++|.+||||||+...|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999999987
No 403
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=93.22 E-value=0.018 Score=66.79 Aligned_cols=61 Identities=20% Similarity=0.095 Sum_probs=39.1
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|+|||+||+|+...-.++-...+.+ ...++..+| ...|++|++.+.|++.|+..|....
T Consensus 103 ~vPiIVviNKiDl~~~~~~~v~~~l~~-~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~~ 165 (501)
T 1zo1_I 103 QVPVVVAVNKIDKPEADPDRVKNELSQ-YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQA 165 (501)
T ss_dssp TCCEEEEEECSSSSTTCCCCTTCCCCC-CCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTTC
T ss_pred CceEEEEEEeccccccCHHHHHHHHHH-hhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhhh
Confidence 589999999999863100000000000 011233455 6899999999999999999987643
No 404
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.02 E-value=0.045 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.-++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999873
No 405
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.85 E-value=0.068 Score=53.89 Aligned_cols=60 Identities=8% Similarity=0.038 Sum_probs=41.4
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
+.|++||+||+|+...-+ ...+.+.+.++.+ ..++..++||++.+.|++.++..|...+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG-ADIKKMENDAKRI--NPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHT-CCHHHHHHHHHHH--CTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhH-HHHHHHHHHHHHh--CCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 468899999999863210 1122333333332 23688999999999999999999987653
No 406
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.77 E-value=0.11 Score=55.89 Aligned_cols=60 Identities=5% Similarity=-0.050 Sum_probs=40.4
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
.+|+++|++|.|+.. +++.....+.++.+|..+|+..+.+|++++ |++.++..+...+..
T Consensus 155 ~~~iilV~~K~Dl~~---~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 155 KVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp TSCEEEEECCGGGSC---HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred cCCEEEEEEeCCCCC---HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 479999999999973 333344456788899999999999999999 999999888877753
No 407
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.74 E-value=0.067 Score=53.72 Aligned_cols=60 Identities=12% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
+|++||+||+|+..... ...+.+.+.++.+ ..++..+++|++.+.|++.++.+|...++.
T Consensus 155 ~~~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 155 VADLIVINKVALAEAVG-ADVEKMKADAKLI--NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCSEEEEECGGGHHHHT-CCHHHHHHHHHHH--CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred cCCEEEEecccCCcchh-hHHHHHHHHHHHh--CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 67799999999863210 1234445555543 235889999999999999999999988764
No 408
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.66 E-value=0.35 Score=50.24 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=44.4
Q ss_pred CCcEEEEEeccccccCCChhHHHHHH----HHHHHHHHHcCCceeEeccCC-----hhhHHHHHHHHhhhhc
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAV----QCLRYLAHVNGASLLFHSSLD-----PGLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq----~~lR~fcl~yGAsL~ftS~K~-----~~n~~~l~kyi~hr~f 568 (890)
++|+|||++|.|+-. .+..++++ ..++.++..+|...++.+.+. ..+++.|.+.|...+-
T Consensus 139 ~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp GGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 378999999999953 34456665 358889999998877666554 4788888888776664
No 409
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.62 E-value=0.054 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..++|+|++|||||||++.|++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 410
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=92.53 E-value=0.11 Score=62.51 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCcEEEEEeccccccC--CChh---HHH----HHHHHH----HHHHH-----HcCCceeEeccC--------------Ch
Q psy11649 506 PVPLILIGGKYDLFEN--LEPN---KKR----IAVQCL----RYLAH-----VNGASLLFHSSL--------------DP 553 (890)
Q Consensus 506 giPivVV~TK~D~~~~--~~~E---~~d----~Iq~~l----R~fcl-----~yGAsL~ftS~K--------------~~ 553 (890)
+.|+++|+||+|+... .+.+ ..+ .+.+.+ ..++. ..+..+|++|++ .+
T Consensus 230 ~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~ 309 (695)
T 2j69_A 230 GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDG 309 (695)
T ss_dssp CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTT
T ss_pred CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhc
Confidence 5789999999999743 1221 112 222222 22221 123578999999 99
Q ss_pred hhHHHHHHHHhhhhcC
Q psy11649 554 GLVKRTRDILNHYAFS 569 (890)
Q Consensus 554 ~n~~~l~kyi~hr~fg 569 (890)
.+++.|..+|...+..
T Consensus 310 ~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 310 TGFPKFMDSLNTFLTR 325 (695)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887754
No 411
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.47 E-value=0.062 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
..|+|+|.+|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999884
No 412
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.33 E-value=0.61 Score=52.35 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHH
Q psy11649 505 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKR 558 (890)
Q Consensus 505 lgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~ 558 (890)
..+|+|+|++|.|.. ..+..+.+ +..+-..|+.+|.+|++.+.+++.
T Consensus 213 ~~kP~i~v~NK~D~~---~~~~l~~l----~~~~~~~~~~vv~iSA~~e~~l~~ 259 (397)
T 1wxq_A 213 VNKPMVIAANKADAA---SDEQIKRL----VREEEKRGYIVIPTSAAAELTLRK 259 (397)
T ss_dssp HHSCEEEEEECGGGS---CHHHHHHH----HHHHHHTTCEEEEECHHHHHHHHS
T ss_pred cCCCEEEEEeCcccc---chHHHHHH----HHHHhhcCCcEEEEeccchhhHHH
Confidence 359999999999986 23322222 223333489999999999999864
No 413
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.33 E-value=0.1 Score=54.99 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=39.3
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|+|+|+||+|+. +.+......+.++..+..+|...+-+|++.+.+++.+.+.|...+
T Consensus 144 ~~pvi~V~nK~D~~---~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 144 KVNIIPLIAKADTL---TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp TSCEEEEESSGGGS---CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred cCCEEEEEeccCCC---CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 69999999999996 555666666678888888999988899999999999999888753
No 414
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=92.30 E-value=0.098 Score=61.86 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCc-EEEEEeccccccCCChhHHHHHHHHHHHHH-HHcCC-----ceeEeccCChhhHH--------------HHHHHH
Q psy11649 505 FPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNGA-----SLLFHSSLDPGLVK--------------RTRDIL 563 (890)
Q Consensus 505 lgiP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc-l~yGA-----sL~ftS~K~~~n~~--------------~l~kyi 563 (890)
+|+| +|||+||+|+. +.+.+..+.+.+.++.++ ..+|. ..|++|++.+.|++ .|...|
T Consensus 313 lgip~iIvviNKiDl~-~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l 391 (592)
T 3mca_A 313 LGISEIVVSVNKLDLM-SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSAL 391 (592)
T ss_dssp SSCCCEEEEEECGGGG-TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHH
T ss_pred cCCCeEEEEEeccccc-cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHH
Confidence 4676 99999999987 356777888889999998 77776 58999999999997 677777
Q ss_pred hhh
Q psy11649 564 NHY 566 (890)
Q Consensus 564 ~hr 566 (890)
...
T Consensus 392 ~~~ 394 (592)
T 3mca_A 392 DQL 394 (592)
T ss_dssp HTS
T ss_pred Hhh
Confidence 654
No 415
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=92.30 E-value=0.44 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..-|.|+|.+++|||+|+|+|++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhh
Confidence 45689999999999999999985
No 416
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.24 E-value=0.076 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|+|.+|||||||++.|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 417
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.23 E-value=0.065 Score=53.16 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
-++|+|.+|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 418
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.01 E-value=0.075 Score=58.86 Aligned_cols=58 Identities=5% Similarity=-0.020 Sum_probs=35.0
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
++|+|+|+||+|+.. ++.....-..++.++..+|+..+++|++.+.| +..+..+...+
T Consensus 174 ~~piIlV~NK~Dl~~---~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 174 KVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp -SCEEEEEECCSSSC---HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred CCCEEEEEECCCCCC---HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 589999999999973 33333344678889999999999999999988 55444444444
No 419
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.89 E-value=0.17 Score=50.76 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=31.0
Q ss_pred CCcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 1 MGPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 1 ~~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
|++..+-+.+.+.+..... ....-|+|+|.+|||||||++.|.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~-------------~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 1 MELRDRIDFLCKTILAIKT-------------AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CCHHHHHHHHHHHHHTSCC-------------SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcc-------------CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555666666666543321 1134699999999999999999876
No 420
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.87 E-value=0.075 Score=53.56 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999883
No 421
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.84 E-value=0.075 Score=52.59 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy11649 38 LLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~ 57 (890)
++|+|++|||||||++.|++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999987
No 422
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.53 E-value=0.13 Score=58.40 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=35.1
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHh
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN 564 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~ 564 (890)
++|+|+|++|+|+. +++......+.++.+|..+|+..+++|++++.|++.++..|.
T Consensus 167 ~v~iIlVinK~Dll---~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 167 KVNIIPLIAKADTL---TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp TSEEEEEEESTTSS---CHHHHHHHHHHHHHHHHHHTCCCCCCC---------------
T ss_pred cCcEEEEEEcccCc---cHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHH
Confidence 79999999999997 445555566788999999999999999999999987554443
No 423
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=91.49 E-value=0.47 Score=56.80 Aligned_cols=26 Identities=8% Similarity=-0.183 Sum_probs=22.9
Q ss_pred CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 543 ASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 543 AsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
.+++++|++.+.+++.|...|...+-
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 46899999999999999999988763
No 424
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.45 E-value=0.11 Score=52.98 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 34 QERTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 34 ~e~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
...-|+|+|++|||||||+++|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4457999999999999999999873
No 425
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.42 E-value=0.088 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|++|||||||++.|++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999883
No 426
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.30 E-value=0.093 Score=54.07 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.-++|+|++|||||||++.|.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999884
No 427
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.12 E-value=0.098 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~ 57 (890)
-++++|.+|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 489999999999999997653
No 428
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.01 E-value=0.2 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..++|.|++|+|||+|++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 429
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.89 E-value=0.11 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..|+|+|.+|||||||.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999987
No 430
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.87 E-value=0.11 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.-|+|+|++|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 431
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.74 E-value=0.13 Score=49.31 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~ 57 (890)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 432
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.70 E-value=0.13 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
..|+|+|.+||||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999874
No 433
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.60 E-value=0.16 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|+|.+||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999999876
No 434
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.42 E-value=0.13 Score=50.66 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~ 57 (890)
-++|+|.+|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 435
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.39 E-value=0.13 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
.-|+|+|.+||||||+.++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 436
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.31 E-value=0.13 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.-|+|+|.+|||||||.++|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999863
No 437
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.30 E-value=0.14 Score=48.69 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy11649 37 TLLLIGTKSVGKSTLVFRF 55 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL 55 (890)
-|+|+|.+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 438
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.26 E-value=0.48 Score=46.81 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
++|+++|++|+|..+ ..++......+|.++...+ ...+.||++.+.+++.++++|...+-
T Consensus 137 ~~~~~~v~nK~D~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 137 NIAVLVLLTKADKLA---SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp TCCEEEEEECGGGSC---HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCCeEEEEecccCCC---chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 588999999999863 3333333455677776665 44578999999999999999987654
No 439
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.21 E-value=0.13 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999873
No 440
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.16 E-value=0.15 Score=51.45 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=35.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCC------------CCC--CCccceeEEEEEEe---ccccceEEEEEEcCCCc
Q psy11649 38 LLLIGTKSVGKSTLVFRFLEKND------------TPK--PTLALEYIYARKSG---KTVMKDICHLWELGSGT 94 (890)
Q Consensus 38 IvLVGd~nvGKSSLInrL~~~~~------------~~k--ptigvdY~f~~~~g---~~~~k~~l~IwDlpG~~ 94 (890)
|+|+|++|||||||+++|+.... .+. ..-|.+|.|..... ....+.-+.-|...|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNY 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCce
Confidence 89999999999999999986311 111 22367787755441 11112245666666643
No 441
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.06 E-value=0.16 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 442
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.01 E-value=0.15 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
.-|+|+|.+|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 443
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.99 E-value=0.16 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 444
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.99 E-value=0.17 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..|+|+|..|||||||++.|.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 445
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.96 E-value=0.59 Score=50.13 Aligned_cols=59 Identities=20% Similarity=0.122 Sum_probs=47.5
Q ss_pred CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649 506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS 569 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K~~~n~~~l~kyi~hr~fg 569 (890)
++|+|+|+||.|...+ .+.+...+..++..+|. ..+.+|++.+.|++.|...|...+..
T Consensus 116 ~~P~ilvlNK~D~~~~-----~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 116 KAPVILAVNKVDNVQE-----KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SSCEEEEEESTTTCCC-----HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CCCEEEEEECcccCcc-----HHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 5899999999999741 23456667778877886 68899999999999999999877643
No 446
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.93 E-value=0.16 Score=49.96 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~ 57 (890)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.88 E-value=0.15 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999873
No 448
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.87 E-value=0.15 Score=49.80 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
-++|+|+.|+|||||++.+++.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999884
No 449
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=89.65 E-value=0.35 Score=56.37 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.6
Q ss_pred ceeEeccCChhhHHHHHHHHhhhh
Q psy11649 544 SLLFHSSLDPGLVKRTRDILNHYA 567 (890)
Q Consensus 544 sL~ftS~K~~~n~~~l~kyi~hr~ 567 (890)
+.||.|++.+..++.|...|...+
T Consensus 253 Pv~~gSA~~~~Gv~~LLd~i~~~~ 276 (529)
T 2h5e_A 253 PVFFGTALGNFGVDHMLDGLVEWA 276 (529)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHS
T ss_pred EEEeeecccCCCHHHHHHHHHHhC
Confidence 578899999999998888888875
No 450
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.65 E-value=0.17 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
+.|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 451
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.62 E-value=0.17 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999965
No 452
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.50 E-value=0.18 Score=52.75 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 453
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.49 E-value=0.14 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..++|+|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999887
No 454
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.44 E-value=0.16 Score=50.93 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
--++|+|++|||||||++.+++
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 455
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.39 E-value=0.21 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 456
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.37 E-value=0.16 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|.+|+|||||++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999873
No 457
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.36 E-value=0.19 Score=50.57 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 458
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.31 E-value=0.22 Score=49.48 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.4
Q ss_pred CccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 32 QSQERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 32 ~~~e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
....+.|+|+|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44457899999999999999999876
No 459
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.29 E-value=0.24 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..-|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 460
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.28 E-value=0.17 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+++-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999883
No 461
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.26 E-value=0.18 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999883
No 462
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.25 E-value=0.18 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..|+|+|.+||||||+.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 463
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.22 E-value=0.18 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
-++|+|+.|||||||++.+++-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999883
No 464
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.07 E-value=0.2 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..|+|+|.+||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 465
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.06 E-value=0.22 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|+|.+||||||+.++|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 466
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.02 E-value=0.18 Score=53.01 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+++-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999883
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.02 E-value=0.25 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
-.++|+|+.|||||||++.+++-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999884
No 468
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.96 E-value=0.2 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
--++|+|++|+|||||++.+++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999999883
No 469
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.93 E-value=0.28 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
..++|.|++|+|||+|+..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 470
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.92 E-value=0.22 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|+|.+||||||+...|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999986
No 471
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.91 E-value=0.24 Score=47.95 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.-|+|+|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
No 472
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.89 E-value=0.19 Score=53.67 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+++-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999883
No 473
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.84 E-value=0.25 Score=48.17 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|+|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.83 E-value=0.21 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+++-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 475
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=88.83 E-value=0.78 Score=55.31 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=22.8
Q ss_pred CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 543 ASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 543 AsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
.++||.|++.+++++.|...|.+.+=
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP 287 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLP 287 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 56899999999999999999988763
No 476
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.78 E-value=0.2 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999884
No 477
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.75 E-value=0.21 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.-++|+|.+|||||||+++|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999873
No 478
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.71 E-value=0.2 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999883
No 479
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.70 E-value=0.21 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
No 480
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.68 E-value=0.2 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999883
No 481
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.56 E-value=0.21 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+++-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5799999999999999999883
No 482
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.50 E-value=0.37 Score=52.33 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=37.3
Q ss_pred CCcEEEEEeccccccCCChhHH-HHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHH
Q psy11649 506 PVPLILIGGKYDLFENLEPNKK-RIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDIL 563 (890)
Q Consensus 506 giPivVV~TK~D~~~~~~~E~~-d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi 563 (890)
|+|.|||.||+|+... +.. +.++.....| ...|-..+++|++++.+++.|+.++
T Consensus 117 ~~~~vivlnK~DL~~~---~~~~~~~~~~~~~y-~~~g~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 117 DIQPIICITKMDLIED---QDTEDTIQAYAEDY-RNIGYDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp TCEEEEEEECGGGCCC---HHHHHHHHHHHHHH-HHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred CCCEEEEEECCccCch---hhhHHHHHHHHHHH-HhCCCeEEEEecCCCCCHHHHHhhc
Confidence 5788999999999842 221 2344443333 3457799999999988887766654
No 483
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.50 E-value=0.22 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
No 484
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.46 E-value=0.21 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999883
No 485
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.41 E-value=0.27 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.+.|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 486
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.38 E-value=0.22 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999883
No 487
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.37 E-value=0.22 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
.-|+|+|.+|||||||.+.|.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999877
No 488
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.32 E-value=0.16 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-cC
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFL-EK 58 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~-~~ 58 (890)
.-++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999999 63
No 489
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.29 E-value=0.22 Score=52.62 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~ 57 (890)
.++|+|+.|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999987
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.28 E-value=0.52 Score=51.80 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=42.0
Q ss_pred CcEEEEEeccccccCCChhHHHHHHHHHHHHHHH-------cCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649 507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-------NGASLLFHSSLDPGLVKRTRDILNHYAF 568 (890)
Q Consensus 507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~-------yGAsL~ftS~K~~~n~~~l~kyi~hr~f 568 (890)
+|+|||+||+|+.. .+..+...+.++..... .+..++.+|++.+.+++.|++.|...+.
T Consensus 218 ~p~ivVlNK~Dl~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 218 LADIVVVNKADGEH---HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GCSEEEEECCCGGG---HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcC---hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 58899999999862 22333333333333222 2688999999999999999999987764
No 491
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.22 E-value=0.29 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|+|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 492
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.19 E-value=0.22 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999883
No 493
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.19 E-value=0.24 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|||||||++.+++-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999883
No 494
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.17 E-value=0.23 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
-.++|+|++|+|||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4699999999999999999987
No 495
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.17 E-value=0.28 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
+.|+|+|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 496
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.08 E-value=0.31 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649 35 ERTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 35 e~kIvLVGd~nvGKSSLInrL~~ 57 (890)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999976
No 497
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.97 E-value=0.18 Score=51.55 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999884
No 498
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.96 E-value=0.25 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999883
No 499
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.91 E-value=0.26 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy11649 36 RTLLLIGTKSVGKSTLVFRFLE 57 (890)
Q Consensus 36 ~kIvLVGd~nvGKSSLInrL~~ 57 (890)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 500
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.91 E-value=0.24 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy11649 37 TLLLIGTKSVGKSTLVFRFLEK 58 (890)
Q Consensus 37 kIvLVGd~nvGKSSLInrL~~~ 58 (890)
.++|+|+.|+|||||++.+++-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999884
Done!