RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11649
(890 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 1e-12
Identities = 91/635 (14%), Positives = 167/635 (26%), Gaps = 195/635 (30%)
Query: 22 SSSEVHKIDIQSQ--ERTLLLIGTKSVGKSTLVFRFLE--------------KNDTPKPT 65
S E+ I + TL L T + +V +F+E K + +P+
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 66 LALE-YIYARKS---------------GKTVMKDICHLWEL------------GSGTSRL 97
+ YI R + +K L EL GSG + +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 98 EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE 157
+ S+ + + F + L+L NS T E L K + N + R S
Sbjct: 167 -ALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNI 223
Query: 158 HFRTAD-EHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLF 216
R + + L+++ P CL L +V A
Sbjct: 224 KLRIHSIQAELRRLLKSKPYE-----------------------NCLLVLLNVQNAKAW- 259
Query: 217 HSSLDPG---LVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKD 273
++ + L+ TR V
Sbjct: 260 -NAFNLSCKILLT-TRFK-----------------------------QVTDFLSAATTTH 288
Query: 274 ASLESGGRGFNRSRGMK-FEKKRGWIEGTVT-----------------ARNLEPNKKRIA 315
SL+ K +++ A ++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344
Query: 316 VQCLRYLAHVNGASL-----LFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIF 370
HVN L + L+P ++ + +V F + I
Sbjct: 345 ----DNWKHVNCDKLTTIIESSLNVLEPAEYRK------MF-----DRLSV-FPPSAHI- 387
Query: 371 VPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSG--FTLVLM- 427
P + +W + + V + +SL + T+ +
Sbjct: 388 -PTIL----------------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 428 LDLSRLNSLWTEAE---TFLAKFRAI--FESNE-SVREKRGSF-----EHFRTADEHRDK 476
+ L L E + + + F+S++ F H + +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 477 GLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY 536
L R + + K IR G + + L+ K I +Y
Sbjct: 491 TLFRMVFLDFRFLEQK---------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 537 LAHVNGASLL-FHSSLDPGLVK-RTRDILNHYAFS 569
VN ++L F ++ L+ + D+L A
Sbjct: 542 ERLVN--AILDFLPKIEENLICSKYTDLL-RIALM 573
Score = 59.5 bits (143), Expect = 5e-09
Identities = 87/629 (13%), Positives = 179/629 (28%), Gaps = 171/629 (27%)
Query: 209 VNGASLLFHSSLDPG--LVKR-TRDILN-HYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
V+G LF + L +V++ ++L +Y F L S + + +P +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQP-----SMMTRMY 112
Query: 265 IEGTTHGKDASLESGGRGF---NRSRGMKFEKKRGWIEGTVTARNLEPNKKRIAV----- 316
IE + L + + F N SR + K R + L P K + +
Sbjct: 113 IE--QRDR---LYNDNQVFAKYNVSRLQPYLKLRQAL------LELRPAKN-VLIDGVLG 160
Query: 317 ---QCLRYLAHVNGASLLFHSS-----LDPGLVKRTRDILN-----HYAFSSHLASAVNF 363
+ + L+ +L Y + S +
Sbjct: 161 SGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 364 DYNKPIFVPFGTDSVASIEGTTQYVTA-----DICHLWELGSGTSRLEVASLFSSFSLTA 418
N + + + + + Y ++ + +++F+L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-------------AWNAFNLSC 266
Query: 419 QSGFTLVLMLDLSRLNSL--WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK 476
+ L+ + L T L +E + R +
Sbjct: 267 K---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-------SLLLKYLDCRPQ 316
Query: 477 GL----IRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQ 532
L + T P L +I IR +D ++++ +K ++
Sbjct: 317 DLPREVLTTNPRRLSIIAE---------SIRDGL-------ATWDNWKHVNCDKLTTIIE 360
Query: 533 CLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDS 592
+SL + L+P ++ + +V F + I P S
Sbjct: 361 ----------SSL---NVLEPAEYRK------MF-----DRLSV-FPPSAHI--PTILLS 393
Query: 593 V---ASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLM---------NDNPLWIVIPKLG 640
+ I+ V ++ + L K S + + +N +
Sbjct: 394 LIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-------EYA 444
Query: 641 LHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSF-----EHFRTADEHRDKGLIRTF 695
LH + Y+ P ++ I ++ F H + + L R
Sbjct: 445 LHRSIVDHYNIPKTFDSDD-----LIPPYL---DQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 696 PVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG 755
+ + K IR G + + L+ K I +Y VN
Sbjct: 497 FLDFRFLEQK---------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN- 546
Query: 756 ASLL-FHSSLDPGLVK-RTRDILNHYAFS 782
++L F ++ L+ + D+L A
Sbjct: 547 -AILDFLPKIEENLICSKYTDLL-RIALM 573
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.0 bits (163), Expect = 2e-11
Identities = 112/684 (16%), Positives = 191/684 (27%), Gaps = 232/684 (33%)
Query: 13 LAHGK--HPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTP--KPTLAL 68
L+HG H + I Q QE+ K + + T +D P L
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQF-----NKILPEPT---EGFAADDEPTTPAELVG 62
Query: 69 EYI-YARKSGKTVMKDICHLWELGSGTSRLEV-ASLFSSFSLTAQSGF-------TLVLM 119
+++ Y + L E +V + F ++ + L
Sbjct: 63 KFLGY-----------VSSLVEPSKVGQFDQVLNLCLTEF----ENCYLEGNDIHALAAK 107
Query: 120 LDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI 179
L +L E A + +K S FR E G + +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-ALFRAVGE----GNAQLVAI--- 159
Query: 180 LIGG-----KY-----DLFE----NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD---- 221
GG Y DL++ + K A + A +F L+
Sbjct: 160 -FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 222 -------PGLVKRTRDILNHYAFS---SHLASAVNFDYNKPIFVPFGTDSVASIEGTTHG 271
P +D L S + ++ V A + G T G
Sbjct: 219 LENPSNTPD-----KDYLLSIPISCPLIGVIQLAHY------VV------TAKLLGFTPG 261
Query: 272 KDASLESGGRGFNRSRGMKFEKKRGWIEGTVTARNLEPNK-----KRIAVQCLRYLAHVN 326
+ S G G +G VTA + + + L +
Sbjct: 262 ELRSYLKGATGH--------------SQGLVTAVAIAETDSWESFFVSVRKAITVLFFI- 306
Query: 327 G--ASLLF-HSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEG 383
G + ++SL P +++ D L + + + S P+ SI
Sbjct: 307 GVRCYEAYPNTSLPPSILE---DSLEN---NEGVPS--------PML---------SISN 343
Query: 384 TTQ-----YVTADICHLWELGSGTSRLEVASLF---SSFSLTAQSGFTLVLMLDLSRLNS 435
TQ YV HL ++E+ SL + ++ G L LN
Sbjct: 344 LTQEQVQDYVNKTNSHL----PAGKQVEI-SLVNGAKNLVVS---GPPQ----SLYGLNL 391
Query: 436 LW--TEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF-PV------PL 486
+A + L + R F S R+ + S +R F PV L
Sbjct: 392 TLRKAKAPSGLDQSRIPF----SERKLKFS---------NR-------FLPVASPFHSHL 431
Query: 487 ILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASL- 545
L+ + +D + K D+ +I V Y +G+ L
Sbjct: 432 -LVPASDLINKD------LVKNNVSFNAK-DI---------QIPV----YDTF-DGSDLR 469
Query: 546 LFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI--------E 597
+ S+ +V I+ + F + FG + + +
Sbjct: 470 VLSGSISERIV---DCIIRLPV---KWETTTQFKATH--ILDFGPGGASGLGVLTHRNKD 521
Query: 598 GT-TQYVTA-------DTEVGRKH 613
GT + + A D + G K
Sbjct: 522 GTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 63.5 bits (154), Expect = 3e-10
Identities = 60/302 (19%), Positives = 102/302 (33%), Gaps = 96/302 (31%)
Query: 605 ADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKLGL------HNTHHICYDHPCNKHVE 658
AD H Y S L ++ +NP+ + I G N + ++ + ++
Sbjct: 1649 AD-----NHFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 659 NQGWIIKILKWV--VSSRGSFEHFRTADEHRDKGLI-RT-FPVPLILIGGK--YDLFEDK 712
+ KI K + S+ +F +KGL+ T F P + + K ++ + K
Sbjct: 1703 TE----KIFKEINEHSTSYTFRS--------EKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 713 GLIRTFPVPLILIG---GKYD-L--------FENLEPNKKRIAVQCLRY---LAHV---- 753
GLI P G G+Y L E+ V+ + Y V
Sbjct: 1751 GLI---PADATFAGHSLGEYAALASLADVMSIES--------LVEVVFYRGMTMQVAVPR 1799
Query: 754 --NGASLLFHSSLDPGLVKRT------RDILNHYAFSS-HLASAVNFDYNKPIFVPFGTD 804
G S +++PG V + + ++ + L VN YN
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--YN---------- 1847
Query: 805 SVASIEGTTQYVTAGSTSSLDKYKHIFTTHFLQDDPSQNKSKSAPDPALDQNYS-EPVID 863
+E QYV AG +LD + + + K + L ++ S E V
Sbjct: 1848 ----VENQ-QYVAAGDLRALDT---------VTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Query: 864 SL 865
L
Sbjct: 1894 HL 1895
Score = 61.2 bits (148), Expect = 1e-09
Identities = 95/526 (18%), Positives = 147/526 (27%), Gaps = 164/526 (31%)
Query: 3 PKSLKDIAIEL--------AHGKHPSPSSS--EVHKIDIQSQERTLLLIGTKSVGKSTLV 52
P + EL + PS +V + + E L + L
Sbjct: 54 PTT----PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL--EGNDI--HALA 105
Query: 53 FRFLEKNDTPKPT---LALEYIYARK-SGKTVMKDICHLWELGSGTSRL------EVASL 102
+ L++NDT L YI AR + + K S L A L
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDK---------KSNSALFRAVGEGNAQL 156
Query: 103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFES----NESVREKRGSFEH 158
+ F Q G T L L+ + I S +E +R + +
Sbjct: 157 VAIFG--GQ-GNTDDY---FEELRDLYQTYHVLVGDL--IKFSAETLSELIRTTLDAEKV 208
Query: 159 F----------RTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-- 206
F DK + + P+ LIG +Q Y+
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG----------------VIQLAHYVVT 252
Query: 207 AHVNGASLLFHSSLDPG-LVKRTRDILNHYAFSSHLASAV---------NFDYN--KPIF 254
A + G PG L + H S L +AV +F + K I
Sbjct: 253 AKLLG--------FTPGELRSYLKGATGH---SQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 255 VPF--GTDS-----VASIEGTTHGKDASLESGGRGFNRS-----RGMKFEKKRGWIEGTV 302
V F G S+ + + SLE G S + E+ ++ V
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSIL--EDSLE-NNEG-VPSPMLSISNLTQEQ----VQDYV 353
Query: 303 TARNLE-PNKKRIAVQCLRYLAHVNGASLL----FHSSLDPGLVKRTRDILNHYAFSSHL 357
N P K++ ++ VNGA L SL GL R A S
Sbjct: 354 NKTNSHLPAGKQV------EISLVNGAKNLVVSGPPQSLY-GLNLTLRKA---KAPSGLD 403
Query: 358 ASAVNFDYNK--------PIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVAS 409
S + F K P+ PF + + + + D L
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSH---LLVPASDLINKD------LVKNNVSFNAKD 454
Query: 410 L----FSSF------SLTAQSGFTLVLMLDLSRLNSLWTEAETFLA 445
+ + +F L+ +V + + W F A
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK--WETTTQFKA 498
Score = 60.1 bits (145), Expect = 4e-09
Identities = 107/606 (17%), Positives = 174/606 (28%), Gaps = 220/606 (36%)
Query: 372 PFGTDSVASIEG-----TTQYVTADICHLWE-----LGSGTSRLE-------VASLFSSF 414
P T S S+E T + A L E L T A L F
Sbjct: 8 PL-TLSHGSLEHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 415 SLTAQSGFT--LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE 472
L G+ LV + + + + L +F + +
Sbjct: 65 -L----GYVSSLVEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 473 HRDKGLIRTFPVPLILIGGKYD------LFE--DKGLIRTFPVPLILIGG-----KYDLF 519
+ K LI+ + I+ +D LF +G + + GG Y F
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI----FGGQGNTDDY--F 170
Query: 520 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFD 579
E E LR L +H + L+K + + L+ ++ A
Sbjct: 171 E--E----------LRDLYQT------YHVLVGD-LIKFSAETLSELIRTTLDAE----- 206
Query: 580 YNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKL 639
+F G + + +E + T D + Y + + PL I + +L
Sbjct: 207 ---KVF-TQGLNILEWLENPSN--TPDKD---------YLLSIPISC----PL-IGVIQL 246
Query: 640 GLHNTHHICYDHPCNKHVENQGWIIKILKW------------VVSSRGSFEHFRTADEHR 687
Y G + LK ++ S+E F +
Sbjct: 247 A-------HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV--- 296
Query: 688 DKGL-----I-----RTFPV----PLILIGGKYDLFEDKGLIRTFPVPLILIGG--KYDL 731
K + I +P P IL + L ++G+ P P++ I + +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSIL---EDSLENNEGV----PSPMLSISNLTQEQV 349
Query: 732 FENLE------PNKKRIAVQCLRYLAHVNGASLL----FHSSLDPGLVKRTRDILNHYAF 781
+ + P K++ ++ VNGA L SL GL R A
Sbjct: 350 QDYVNKTNSHLPAGKQV------EISLVNGAKNLVVSGPPQSLY-GLNLTLRKA---KAP 399
Query: 782 SSHLASAVNFDYNK--------PIFVPFGTDSVASIEGTTQYVTAGSTSSLDKYKHIFTT 833
S S + F K P+ PF H +
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPF---------------------------H---S 429
Query: 834 HFL--------QDDPSQNKSKSAPDPALDQNYSEPVIDS-----LRNQK---LEQL-DQM 876
H L +D N S +A D + PV D+ LR E++ D +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQI------PVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 877 RRE-VD 881
R V
Sbjct: 484 IRLPVK 489
Score = 54.7 bits (131), Expect = 1e-07
Identities = 121/718 (16%), Positives = 204/718 (28%), Gaps = 270/718 (37%)
Query: 209 VNGASL----LFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIF---VPFGTDS 261
++ S L H SL+ L+ T + +S L + F +P T+
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPT----ASFFIASQL---------QEQFNKILPEPTEG 47
Query: 262 VASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWIEGTVTARNLEPNKKRIAVQCLRY 321
A+ + T E G+ F + + + +EP+K Q L
Sbjct: 48 FAADDEPT----TPAELVGK-F-----LGY-----------VSSLVEPSKVGQFDQVLNL 86
Query: 322 -LAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 380
L F + L DI H A ++ L + T V +
Sbjct: 87 CLTE-------FENCY---L--EGNDI--H-ALAAKLLQEND------------TTLVKT 119
Query: 381 IEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA 440
E Y+TA I + ++LF + G A
Sbjct: 120 KELIKNYITARIM----AKRPFDKKSNSALFRA----VGEG-----------------NA 154
Query: 441 ETFLAKFRAIF----ESNESVREKRGSFEHFRTA-----DEHRD--KGLIRTFPVPLILI 489
+ AIF +++ E R ++ + + LIRT +
Sbjct: 155 QLV-----AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 490 GGKYDLFE---------DKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL--A 538
++ E DK + + P+ LIG +Q Y+ A
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIG----------------VIQLAHYVVTA 253
Query: 539 HVNGASLLFHSSLDPG-LVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS-I 596
+ G PG L + H S L +AV TDS S
Sbjct: 254 KLLG--------FTPGELRSYLKGATGH---SQGLVTAV---------AIAETDSWESFF 293
Query: 597 EGTTQYVTADTEVG-RKHLTT----------KYSSNSALGL---M---NDNPLWIVIPKL 639
+ +T +G R + + S + G+ M ++ V +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 640 GLHNTHHICYDHPCNKHVENQGWIIKI-LK-----WVVSSRG---SFEHFRTA------- 683
N+H P K VE I L VVS G S
Sbjct: 354 NKTNSHL-----PAGKQVE-------ISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAP 399
Query: 684 ---DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLI--RTF-PV------PLILIGGKYDL 731
D+ R +P F ++ L F PV L L+ +
Sbjct: 400 SGLDQSR---------IP----------FSERKLKFSNRFLPVASPFHSHL-LVPASDLI 439
Query: 732 FENLEPNKKRIAVQCLR---YLAHVNGASL-LFHSSLDPGLVKRTRDILNHYAFSSHLAS 787
++L N + ++ Y +G+ L + S+ +V I+ +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTF-DGSDLRVLSGSISERIV---DCIIRLPV---KWET 492
Query: 788 AVNFDYNKPIFVPFGTDSVASI--------EGT-TQYVTAGSTSSLDK-------YKH 829
F + FG + + +GT + + AG +LD +K
Sbjct: 493 TTQFKATH--ILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---TLDINPDDDYGFKQ 545
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 39.5 bits (93), Expect = 0.002
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 20 SPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPK--PTLALEYIYARKS- 76
+ + + +S E L + G VGKS LV RFL K + PTL Y R
Sbjct: 13 LGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY---RHQA 69
Query: 77 ---GKTVMKDI 84
+ V +I
Sbjct: 70 TIDDEVVSMEI 80
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 37.2 bits (87), Expect = 0.011
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 15 HGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIY 72
H H S + + + R ++++G + VGK++L +F+E ++ PT+ Y
Sbjct: 4 HHHHSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-- 61
Query: 73 ARKS----GKTVMKDI 84
K +
Sbjct: 62 -SKIVTLGKDEFHLHL 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 36.3 bits (85), Expect = 0.014
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
S + + + G VGKS+LV RF++ ++ PT+ Y R+ I
Sbjct: 1 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY---RQVISCDKSICTLQI 55
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 36.8 bits (86), Expect = 0.014
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
QS + +++ G VGKS+LV RF++ DT PT+ Y R+ I
Sbjct: 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISCDKSVCTLQI 60
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 36.3 bits (85), Expect = 0.015
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
QS+ R + ++G +SVGKS+L +F+E D+ PT+ + K G+ +
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF---TKLITVNGQEYHLQL 58
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 36.4 bits (85), Expect = 0.018
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
S+ L+++G VGKS L +F++ PT+ Y K G DI
Sbjct: 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY---TKICSVDGIPARLDI 61
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 36.0 bits (84), Expect = 0.022
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 17 KHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPK--PTLALEYIYAR 74
H SS + E L ++G + GKS L +FL K + P L Y
Sbjct: 3 HHHHHSSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY---S 59
Query: 75 KS----GKTVMKDI 84
+ V +
Sbjct: 60 SEETVDHQPVHLRV 73
Score = 28.3 bits (64), Expect = 9.2
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 671 VSSRGSFEH---FRTADEHRDKGLIRTFPVPLILIGGKYDLFED 711
V SR SF+ + K R+ +P +L+G K D+ +
Sbjct: 101 VDSRQSFDSSSSYLELLALHAKETQRS--IPALLLGNKLDMAQY 142
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 35.5 bits (83), Expect = 0.027
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
++++G+ VGKS L +F+ + +PT A Y RK G+ V DI
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY---RKKVVLDGEEVQIDI 56
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 35.6 bits (83), Expect = 0.035
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 18 HPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEK 58
H SS + Q E + ++G S GKS LV R+L
Sbjct: 3 HHHHHSSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTG 43
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 35.3 bits (82), Expect = 0.048
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
++++G+ VGKS L +F+ + +PT A Y RK G+ V DI
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY---RKKVVLDGEEVQIDI 66
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 35.4 bits (82), Expect = 0.052
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALE 69
+ LIG VGK+T + R L+ T+
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV 47
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 35.4 bits (82), Expect = 0.054
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTL 66
L+L+G GK+T V R L TL
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 34.8 bits (81), Expect = 0.055
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
++++G+ VGKS L +F+ + +PT A Y RK G+ V DI
Sbjct: 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY---RKKVVLDGEEVQIDI 70
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 34.7 bits (79), Expect = 0.058
Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 8/128 (6%)
Query: 20 SPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKT 79
S + H + + +L+ G ++GKS L +++ + + I ++
Sbjct: 1 SNAKQTWHANFLVIDKMGVLITGEANIGKSELSLALIDRGHQL---VCDDVIDLKQENNQ 57
Query: 80 VM----KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETF 135
++ + +G ++V LF ++ Q L + L L +
Sbjct: 58 LIGSCPSVANGYILI-TGIGIIDVPKLFGLDAVVNQHEVHLSISLVKPEKMPLLDDPLNP 116
Query: 136 LAKFRAIF 143
L + I
Sbjct: 117 LYRTEIIL 124
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 34.9 bits (81), Expect = 0.058
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 13 LAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
+ H H S ++ + ++L+G VGKSTL F + +P +
Sbjct: 1 MHHHHHHSSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPED- 59
Query: 71 IYARKS----GKTVMKDI 84
+ + V +
Sbjct: 60 -TYERRIMVDKEEVTLVV 76
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 34.9 bits (81), Expect = 0.059
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
S E L+++G VGKS L + ++ D PT+ Y RK G+T + DI
Sbjct: 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY---RKQVVIDGETCLLDI 56
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 34.4 bits (80), Expect = 0.076
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTL 66
++L+G VGK++LV R+ E ND TL
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTL 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 34.4 bits (80), Expect = 0.078
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
+ L+G VGKS++++RF+E + PT
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPT 38
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 34.6 bits (80), Expect = 0.089
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDT 61
+ ++G +VGKS L+ F K
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSK 46
Score = 28.4 bits (64), Expect = 7.9
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 671 VSSRGSFEHFRT-ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRT 717
VSS SFE + + + R P+ +L+ K DL + +R
Sbjct: 106 VSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRL 153
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 34.1 bits (79), Expect = 0.091
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
+ L+G VGKS++V RF++ + PT
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPT 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 34.0 bits (78), Expect = 0.097
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
L+L+G +VGKS++V RF+ + +PT
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPT 35
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 34.0 bits (79), Expect = 0.098
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 35 ERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
E L+++G VGKS L + ++ D PT+ Y RK G+T + DI
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY---RKQVVIDGETCLLDI 55
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 33.6 bits (78), Expect = 0.11
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
++L+G VGKSTL F + + + + + + V +
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSED--TYERRIMVDKEEVTLIV 55
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 34.3 bits (79), Expect = 0.11
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
++LIG VGKS L+ RF + N K T+ +E+
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEF 50
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 34.0 bits (79), Expect = 0.12
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
L+L+G GKS+LV RF++ + + T
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQEST 44
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 34.1 bits (79), Expect = 0.12
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
L+IG+ GKS L+ +F+E T+ +E+
Sbjct: 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEF 62
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 33.6 bits (78), Expect = 0.13
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
L+L+G +VGKS+LV RF++ ++ + T
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQEST 38
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 33.6 bits (78), Expect = 0.13
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 34 QERTLLLIGTKSVGKSTLVFRFLEKNDTPK--PTLALEYIYARKS----GKTVMKDI 84
+E L+++G+ VGKS L +F++ K PT+ Y RK + M +I
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY---RKQVEVDCQQCMLEI 55
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 33.7 bits (78), Expect = 0.13
Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 51/159 (32%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPK--PTLALEYIYARKS----GKTVMKDICHLWELG 91
++L+G VGK++L F K + Y ++ G+ + +
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY---ERTLTVDGEDTTLVV---VD-T 59
Query: 92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE 151
+L+ + S + +V S+
Sbjct: 60 WEAEKLDKSWSQESCLQGGS-AYVIVY-----------------------------SI-A 88
Query: 152 KRGSFEHFRTADEHRDKGLIR---TFPVPLILIGGKYDL 187
RGSFE A E R + L R VP+IL+G K DL
Sbjct: 89 DRGSFES---ASELRIQ-LRRTHQADHVPIILVGNKADL 123
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 33.8 bits (78), Expect = 0.13
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
++LIG VGKS L+ RF N K T+ +E+
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 33.7 bits (78), Expect = 0.14
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
++IG VGKS L+ +F EK T+ +E+
Sbjct: 18 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF 52
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 33.7 bits (78), Expect = 0.14
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 23 SSEVHKIDIQSQ-ERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS--- 76
SS + Q E L+++G VGKS L + ++ D PT+ Y RK
Sbjct: 8 SSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY---RKQVVI 64
Query: 77 -GKTVMKDI 84
G+T + DI
Sbjct: 65 DGETCLLDI 73
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 33.8 bits (78), Expect = 0.14
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
L+ +G +SVGK++L+ RF+ ++T + T
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQAT 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 33.7 bits (78), Expect = 0.14
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
L+IG GKS L+ +F+EK D T+ +E+
Sbjct: 13 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF 47
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 33.7 bits (78), Expect = 0.14
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
++IG VGKS L+ +F +K T+ +E+
Sbjct: 24 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF 58
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 33.3 bits (77), Expect = 0.15
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
+LLIG VGKS L+ RF+E N + T+ +++
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF 40
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 33.7 bits (78), Expect = 0.16
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
++LIG VGK+ L+ RF + + T+ +E+
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEF 62
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 33.3 bits (77), Expect = 0.16
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
L+++G VGKS L +F +K D PT+ Y K + + D+
Sbjct: 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY---LKHTEIDNQWAILDV 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 33.3 bits (77), Expect = 0.19
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
L+ +G +SVGK++L+ RF+ ++T + T
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQAT 46
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 33.4 bits (77), Expect = 0.19
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
LLLIG VGKS L+ RF + + T+ +++
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF 45
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 33.0 bits (76), Expect = 0.22
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 15 HGKHPSPSSSEVHKIDIQSQERT------LLLIGTKSVGKSTLVFRFLEK--NDTPKPTL 66
H H S + + S LLLIG VGKS L+ RF + ++ T+
Sbjct: 7 HHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI 66
Query: 67 ALEY 70
+++
Sbjct: 67 GVDF 70
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 32.9 bits (76), Expect = 0.24
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
LLLIG VGK+ ++FRF E N T T+ +++
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 45
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 33.0 bits (76), Expect = 0.24
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
LLLIG SVGK++ +FR+ + T+ +++
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF 59
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 33.0 bits (76), Expect = 0.25
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
LLLIG VGKS L+ RF + ++ T+ +++
Sbjct: 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 53
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 33.0 bits (76), Expect = 0.25
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
++LIG VGKS L+ RF N K T+ +E+
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF 66
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 33.0 bits (76), Expect = 0.26
Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
+++IG++ VGK++L+ RF + + K T+ +++
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF 63
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 33.0 bits (76), Expect = 0.29
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
+++IG +VGK+ L +RF D + T
Sbjct: 23 IIVIGDSNVGKTCLTYRFCAGRFPDRTEAT 52
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 32.6 bits (75), Expect = 0.30
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKS----GKTVMKDI 84
L ++G GKS+L+ RFL + + T + +Y +K G+T + I
Sbjct: 10 LGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY---KKEMLVDGQTHLVLI 58
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 32.7 bits (75), Expect = 0.31
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKP 64
L+++G GK+TL+ + ++ +
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLG 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 32.5 bits (75), Expect = 0.32
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
LL+IG VGKS+L+ RF + + + T+ +++
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF 46
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 32.5 bits (75), Expect = 0.34
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKS----GKTVMKDI 84
+LL+G VGKS L F + Y +S G+ +
Sbjct: 5 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVVDGEEASLMV 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 32.6 bits (75), Expect = 0.35
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
+L+IG SVGK++ +FR+ + T+ +++
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF 45
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 32.7 bits (75), Expect = 0.36
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
+LLIG VGKS L+ RF+E N + T+ +++
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 32.1 bits (74), Expect = 0.38
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS----GKTVMKDI 84
+E ++++G+ VGKS L +F+ + PT+ Y RK + +I
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY---RKEIEVDSSPSVLEI 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 32.6 bits (75), Expect = 0.38
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
+L+IG VGKS+L+ RF + + T+ +++
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 32.6 bits (75), Expect = 0.38
Identities = 7/35 (20%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
L +G VGK+++++++ + N T+ +++
Sbjct: 14 FLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDF 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 32.1 bits (74), Expect = 0.39
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
++++G + GK++L F ++ K T
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQT 38
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 32.3 bits (74), Expect = 0.43
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
LL +G VGK+T ++R+ + N T+ +++
Sbjct: 28 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDF 62
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 32.2 bits (74), Expect = 0.43
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
++LIG VGK+ LV RF + T+ +++
Sbjct: 29 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDF 63
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 32.2 bits (74), Expect = 0.45
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
LL+IG SVGK++ +FR+ + T+ +++
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF 60
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 32.2 bits (74), Expect = 0.48
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 16 GKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
G P S + D + L+L+G SVGK+ +V RF ++ T+ +++
Sbjct: 13 GLVPRGSGDPDEQYDFLFK---LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDF 66
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 32.2 bits (74), Expect = 0.49
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK---NDTPKPTLALEY 70
++L+G VGK+ L+ RF + T T+ +++
Sbjct: 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDF 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 31.7 bits (73), Expect = 0.52
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
++L+G VGKS+L+ R++ + T
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHT 39
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 31.7 bits (73), Expect = 0.55
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
++++G +VGKS+++ R+ + K T
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKT 37
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 31.9 bits (73), Expect = 0.57
Identities = 6/21 (28%), Positives = 16/21 (76%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
++++G VGK++L+ +++ K
Sbjct: 11 VIILGDSGVGKTSLMNQYVNK 31
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 31.9 bits (73), Expect = 0.62
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEY 70
++L G +VGKS+ + R + + TL +++
Sbjct: 31 IVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF 65
Score = 28.8 bits (65), Expect = 5.3
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 152 KRGSFEHFRT----ADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKR 197
SF + R ++ + VP++L+G K D+ + ++
Sbjct: 112 CEKSFLNIREWVDMIEDAAHET------VPIMLVGNKADIRDTAATEGQK 155
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 31.7 bits (72), Expect = 0.63
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
+L+G SVGKS++V R +
Sbjct: 10 TVLLGESSVGKSSIVLRLTKD 30
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 31.8 bits (73), Expect = 0.65
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
++++G VGK++L+ R++ + K T
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKAT 40
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 31.5 bits (72), Expect = 0.75
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 15/62 (24%)
Query: 15 HGKHPSPSSSEVHKIDIQSQERT---------------LLLIGTKSVGKSTLVFRFLEKN 59
H H S ++ ++ Q + ++LIG + VGKSTL F +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVH 61
Query: 60 DT 61
D+
Sbjct: 62 DS 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.2
Identities = 8/35 (22%), Positives = 9/35 (25%), Gaps = 22/35 (62%)
Query: 821 TSSLDKYKHIFTTHFLQDDPSQNKSKSAPD--PAL 853
+SL Y A D PAL
Sbjct: 26 QASLKLY--------------------ADDSAPAL 40
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 30.7 bits (70), Expect = 1.4
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPK----PTLALEYIYARKS----GKTVMKDICHLWE 89
++LIG + VGKSTL F +D+ Y ++ G++ + +WE
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTY---ERTLMVDGESATIILLDMWE 65
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 30.9 bits (70), Expect = 1.6
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 30 DIQSQERTLLLIGTKSVGKSTLV 52
I ++T++L G +VGKS+ +
Sbjct: 24 SINPHKKTIILSGAPNVGKSSFM 46
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 29.9 bits (67), Expect = 2.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 18 HPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALE 69
H SS + Q + +LL+G + GKS++ K +P TL LE
Sbjct: 3 HHHHHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLE 53
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB:
3o7h_A 3o7j_A* 3o7k_A
Length = 189
Score = 30.1 bits (67), Expect = 2.6
Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 15/70 (21%)
Query: 119 MLDLSRLNSLWTEAETFLAKFRAIFESN---ESVREKR--GSFEH--------FRTADEH 165
M+ LS+ NSL + E++ R S E
Sbjct: 24 MIALSQFNSL--SKDEAAGLLAPCVALPAWGETLVSLRPFASRHALLQTAREAMANWGED 81
Query: 166 RDKGLIRTFP 175
+ P
Sbjct: 82 ELNAALSAHP 91
Score = 30.1 bits (67), Expect = 2.6
Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 15/70 (21%)
Query: 427 MLDLSRLNSLWTEAETFLAKFRAIFESN---ESVREKR--GSFEH--------FRTADEH 473
M+ LS+ NSL + E++ R S E
Sbjct: 24 MIALSQFNSL--SKDEAAGLLAPCVALPAWGETLVSLRPFASRHALLQTAREAMANWGED 81
Query: 474 RDKGLIRTFP 483
+ P
Sbjct: 82 ELNAALSAHP 91
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate,
allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1
PDB: 2o73_A* 2o74_A*
Length = 174
Score = 28.9 bits (64), Expect = 4.5
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 120 LDLSRLNSLWTEAETFLAKFRAIFESNESVREK--------------RGSFEHFRTADEH 165
+D++ +N+L E F+ F + E + E + +
Sbjct: 1 MDINVVNAL--AYEDFVKLFGNVVEKCPLISAAIWSYRPFKDLADIEARISEFIHSLPDS 58
Query: 166 RDKGLIRTFP 175
+G++R P
Sbjct: 59 GKEGILRCHP 68
Score = 28.9 bits (64), Expect = 4.5
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 428 LDLSRLNSLWTEAETFLAKFRAIFESNESVREK--------------RGSFEHFRTADEH 473
+D++ +N+L E F+ F + E + E + +
Sbjct: 1 MDINVVNAL--AYEDFVKLFGNVVEKCPLISAAIWSYRPFKDLADIEARISEFIHSLPDS 58
Query: 474 RDKGLIRTFP 483
+G++R P
Sbjct: 59 GKEGILRCHP 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.8 bits (64), Expect = 5.7
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHL 87
+++ G VGK+TLV + +E+ E + ++ K I
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT 52
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 28.7 bits (65), Expect = 6.7
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 18 HPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN 59
H SS + Q +TL+LIG VG+S + L +N
Sbjct: 3 HHHHHSSGRENLYFQ-GRKTLVLIGASGVGRSHIKNALLSQN 43
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 28.8 bits (64), Expect = 7.0
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 23 SSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVM- 81
++ +H + + +L+ G +GKS +++ +A + + R+ K +
Sbjct: 132 TTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKRG---HRLVADDNVEIREISKDELI 188
Query: 82 ----KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDL 122
K I HL E+ G + V +LF + S+ + L + L+
Sbjct: 189 GRAPKLIEHLLEI-RGLGIINVMTLFGAGSILTEKRLRLNIHLEN 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,266,679
Number of extensions: 805287
Number of successful extensions: 1894
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1877
Number of HSP's successfully gapped: 104
Length of query: 890
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 788
Effective length of database: 3,853,851
Effective search space: 3036834588
Effective search space used: 3036834588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)