RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11649
(890 letters)
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 36.6 bits (83), Expect = 0.004
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEK 58
QS+ R + ++G +SVGKS+L +F+E
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEG 27
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 36.1 bits (82), Expect = 0.009
Identities = 12/55 (21%), Positives = 18/55 (32%)
Query: 35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWE 89
E LLL+GT GKST + + + + PT +
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQR 56
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 35.0 bits (79), Expect = 0.015
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96
L+L+G +VGKS+LV RF++ + + ++ + +G R
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 34.9 bits (79), Expect = 0.019
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDI-CHLWELG 91
+L+IG SVGK++ +FR+ + + TP + + K+ K I +W+
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 34.7 bits (78), Expect = 0.025
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKS--GKTVMKDICH 86
++++G VGK++L+ +++ K ++ K T+ +++ + V I
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 57
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 34.8 bits (79), Expect = 0.027
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDI-CHLWELG 91
LLLIG VGKS L+ RF + T + + K+ + K + +W+
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 63
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 34.5 bits (78), Expect = 0.029
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSG 93
++IG VGKS L+ +F +K P L + + + K I +G
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.8 bits (76), Expect = 0.044
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLW 88
+ + G VGKS+LV RF++ ++ PT+ Y K++
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDT 57
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 33.6 bits (75), Expect = 0.048
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPT 65
+LL+G VGKS L F D P+
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAE 31
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 33.8 bits (76), Expect = 0.054
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWE 89
S + ++++ G ++ GK++L+ + P A G V
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 33.1 bits (74), Expect = 0.076
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 34 QERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLW 88
+E L L+G + GK+T V + + + + V + +
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 55
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 32.8 bits (73), Expect = 0.079
Identities = 9/59 (15%), Positives = 27/59 (45%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96
++++G +VGKS+++ R+ + T + + + + +D+ + +G
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.8 bits (74), Expect = 0.080
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDI-CHLWELG 91
+LLIG VGKS L+ RF+E P + + K+ K + +W+
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 59
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 32.7 bits (73), Expect = 0.089
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96
+ L+G VGKS++++RF+E + P + + K+ + + L +G R
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 32.5 bits (73), Expect = 0.11
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKT-VMKDICHLWELG 91
+L+IG VGKS+L+ RF + P+ + + K+ K +W+
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 64
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 32.7 bits (73), Expect = 0.11
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLW 88
L + G VGKS LV RFL K PTL Y + V+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDT 57
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 32.3 bits (72), Expect = 0.12
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 21 PSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEK 58
P SE HK+ +++G VGKS L +F++
Sbjct: 1 PPPSETHKL---------VVVGGGGVGKSALTIQFIQS 29
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 32.3 bits (72), Expect = 0.14
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 36 RTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICH 86
+ L+++G + GK+ L+ + + PT+ Y+ + ++
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALW 55
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.0 bits (72), Expect = 0.14
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDIC-HLWELG 91
LLLIG VGK+ ++FRF E + + ++ + K I +W+
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 32.3 bits (72), Expect = 0.15
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLW 88
++++G GK+ L+ F + + PT+ Y + + ++
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDT 57
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.9 bits (71), Expect = 0.16
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 38 LLLIGTKSVGKSTLVFRFL-EKNDTPKPT 65
LL++G + GK+T++ +F E DT PT
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPT 33
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 32.3 bits (72), Expect = 0.16
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTL 66
+++G +VGK+ L+ + PT+
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 32.0 bits (71), Expect = 0.16
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDT 61
++LIG + VGKSTL F +D+
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDS 29
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 32.0 bits (71), Expect = 0.17
Identities = 9/57 (15%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGS 92
++++G VGK++L+ R++ + K T+ +++ + +W+
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.9 bits (71), Expect = 0.19
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICH 86
QE +LL+G + GK+TL+ + D T + + ++
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLA-SEDISHITPTQGFNIKSVQSQGFKLNVWD 66
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 31.9 bits (71), Expect = 0.20
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 33 SQERTLLLIGTKSVGKSTLVFRFL-EKNDTPKPTLALEYIYARKSGKTVMKDICHLWE 89
QE ++++G + GK+T++++F + PT+ + + E
Sbjct: 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 31.8 bits (71), Expect = 0.24
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELG 91
LL +G VGK+T ++R+ + PK + + K +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 31.5 bits (70), Expect = 0.25
Identities = 8/56 (14%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLW 88
++E +L++G + GK+T++++ + + + + K V ++ +
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKL-GQSVTTIPTVGFNVETVTYKNVKFNVWDVG 64
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 31.6 bits (70), Expect = 0.25
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 33 SQERTLLLIGTKSVGKSTLVFRFLEKN 59
++E +L++G GK+T+++R
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGE 29
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.3 bits (70), Expect = 0.27
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDI-CHLWELG 91
++LIG VGK+ LV RF + P + + K+ + + + +W+
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 31.6 bits (71), Expect = 0.28
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTL 66
LLL+G GKST+V + + T
Sbjct: 9 LLLLGAGESGKSTIVKQM--RILHVVLTS 35
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 31.2 bits (69), Expect = 0.31
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLW 88
L+++G VGKS L +F +K P +E Y + + I +
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVL 57
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 31.1 bits (69), Expect = 0.37
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
++++G+ VGKS L +F+
Sbjct: 7 VIMVGSGGVGKSALTLQFMYD 27
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 31.1 bits (69), Expect = 0.41
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEK 58
Q +++G +VGK+ L+ +
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTN 28
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 30.7 bits (68), Expect = 0.41
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLW 88
L ++G GKS+L+ RFL K G+T + I
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 60
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 31.0 bits (69), Expect = 0.41
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHL 87
++L+G VGK+ L+ RF + ++ I R V L
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKL 58
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 30.7 bits (68), Expect = 0.43
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDI-CHLWELG 91
L+IG GKS L+ +F+EK + + K K + +W+
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.7 bits (68), Expect = 0.45
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
L+++G+ VGKS L +F++
Sbjct: 6 LVVLGSGGVGKSALTVQFVQG 26
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.8 bits (68), Expect = 0.46
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
L+++G VGKS L +F++
Sbjct: 8 LVVVGGGGVGKSALTIQFIQS 28
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 31.0 bits (69), Expect = 0.47
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTL 66
+LL+G GKST + + PT
Sbjct: 5 ILLLGAGESGKSTFLKQM-RIIHGQDPTK 32
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 30.7 bits (68), Expect = 0.48
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR 96
++L+G VGK++LV R+ E K L + K K + +G R
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 30.3 bits (67), Expect = 0.50
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
L+++G VGKS L + ++
Sbjct: 6 LVVVGAGGVGKSALTIQLIQN 26
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 30.3 bits (67), Expect = 0.56
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTL 66
L+ +G +SVGK++L+ RF+ ++T + T+
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATI 33
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 30.4 bits (67), Expect = 0.58
Identities = 11/69 (15%), Positives = 27/69 (39%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL 97
+++IG +VGK+ L +RF + + + ++ + I +G R
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 98 EVASLFSSF 106
+ + +
Sbjct: 65 RKSMVQHYY 73
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.4 bits (67), Expect = 0.59
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
L+L+G GK+T V R L
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTG 26
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 30.3 bits (67), Expect = 0.62
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARK--SGKTVMKDICH 86
++L+G VGKS+L+ R++ + T+ +E++ G V I
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 61
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 30.3 bits (67), Expect = 0.65
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPT 65
+++G +VGK+ L+ + + PT
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPT 41
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.3 bits (67), Expect = 0.66
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
++++G+ VGKS L +F+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTG 26
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.0 bits (66), Expect = 0.77
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 38 LLLIGTKSVGKSTLVFRFL-EKNDTPKPTLALEYIYARKSGKTVMKDICHLWE 89
LL +G + GK+TL+ ++ T +PT
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHI 55
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 30.0 bits (66), Expect = 0.79
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICH 86
L+L+G +VGKS++V RF+ + + + + +
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKF 54
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 30.0 bits (66), Expect = 0.99
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 36 RTLLLIGTKSVGKSTLVFRFLEKN 59
R +L +G GK+ L R L
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.6 bits (65), Expect = 1.0
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 38 LLLIGTKSVGKSTLVFRFLEKN 59
+L++G + GK+T++++
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE 24
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.5 bits (65), Expect = 1.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
++LIG VGKS L+ RF
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRN 27
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 29.5 bits (65), Expect = 1.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 38 LLLIGTKSVGKSTLVFRFLEK 58
++IG VGKS L+ +F EK
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEK 27
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 29.6 bits (65), Expect = 1.4
Identities = 14/90 (15%), Positives = 26/90 (28%)
Query: 577 NFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVI 636
++K F D V +T + +E G ++ N L + +
Sbjct: 119 ILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNPNGRLCGEVWHFSSQ 178
Query: 637 PKLGLHNTHHICYDHPCNKHVENQGWIIKI 666
N + H K + II+
Sbjct: 179 RHKEKVNGKTVKLTHITPKPRDLIERIIRA 208
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.8 bits (64), Expect = 1.8
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 23 SSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVM- 81
++ +H + + +L+ G +GKS +++ +A + + R+ K +
Sbjct: 3 TTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKRG---HRLVADDNVEIREISKDELI 59
Query: 82 ----KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLD 121
K I HL E+ G + V +LF + S+ + L + L+
Sbjct: 60 GRAPKLIEHLLEI-RGLGIINVMTLFGAGSILTEKRLRLNIHLE 102
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.4 bits (65), Expect = 1.8
Identities = 20/175 (11%), Positives = 50/175 (28%), Gaps = 23/175 (13%)
Query: 19 PSPSSSEVHKI-----DIQSQERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLAL 68
+ +++ ++ T+L++G VGKS+ V + +
Sbjct: 11 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP 70
Query: 69 EYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSR---- 124
+ ++G T+ I L G ++A L ++ L+ + L
Sbjct: 71 VMVSRSRAGFTLN--IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVD 128
Query: 125 ---LNSLWTEAETFLAKFR----AIFESNESVREKRGSFEHFRTADEHRDKGLIR 172
++F + ++ F + ++R
Sbjct: 129 NLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVR 183
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 29.2 bits (64), Expect = 1.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 35 ERTLLLIGTKSVGKSTLVFRF 55
E LLL+G GKST+V +
Sbjct: 2 EVKLLLLGAGESGKSTIVKQM 22
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.9 bits (63), Expect = 2.0
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 34 QERTLLLIGTKSVGKSTLVFRFLEKN 59
+ L+ +G + GK+TL+ +
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish
(Brachydanio rerio) [TaxId: 7955]}
Length = 165
Score = 28.7 bits (64), Expect = 2.2
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 121 DLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK 168
D++ +N+L E F+ F + E + S+ F+ + +
Sbjct: 1 DINVVNAL--AYEDFVKLFGNVVEKCPLISAAIWSYRPFKDLADIEAR 46
Score = 28.7 bits (64), Expect = 2.2
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 429 DLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK 476
D++ +N+L E F+ F + E + S+ F+ + +
Sbjct: 1 DINVVNAL--AYEDFVKLFGNVVEKCPLISAAIWSYRPFKDLADIEAR 46
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 28.2 bits (61), Expect = 3.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 37 TLLLIGTKSVGKSTLVFRFLEKN 59
T+L++G +VGKSTL + ++K
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKK 24
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.0 bits (62), Expect = 3.8
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 22 SSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVM 81
+ +++H + ++ +LL G +GKS + KN + + I + G +
Sbjct: 2 TVAQIHGVLLEVFGVGVLLTGRSGIGKSECALDLINKNHLF---VGDDAIEIYRLGNRLF 58
Query: 82 KDIC-----HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLD 121
+ G G + V + ++ L++ L
Sbjct: 59 GRAQEVAKKFMEIRGLGI--INVERFYGLQITKQRTEIQLMVNLL 101
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.8 bits (60), Expect = 4.0
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 37 TLLLIGTKSVGKSTLVFRFLEKN 59
+++ G + GKS+L+ +
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGRE 25
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 27.6 bits (60), Expect = 4.8
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRF-LEKNDTPKPTLALEYIYARKSGKTVMKDICHLW 88
++E +L++G GK+T+++R + + T KPT+ +
Sbjct: 14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQ 71
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.4 bits (59), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 37 TLLLIGTKSVGKSTLVFRFLEKN 59
T++ G +VGKSTL++R K
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKK 24
>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 27.5 bits (60), Expect = 5.8
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 613 HLTTKYSSNSALGLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKW 669
LT + SA L++D P + + H+ + N+H++ Q ++ W
Sbjct: 128 VLTRDKTVVSADLLIDDRP--DITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSW 182
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.0 bits (58), Expect = 7.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 40 LIGTKSVGKSTLVFRFLEKN 59
++G +VGKSTL+ L
Sbjct: 10 IVGKPNVGKSTLLNNLLGVK 29
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.0 bits (58), Expect = 8.0
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 36 RTLLLIGTKSVGKSTLVFRFLEKNDTPK-PTLALEYIYARKSGKTVMKDICHLWE 89
+T+ ++G +S GKS LV + +T E+++ + G +
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQ 62
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.0 bits (58), Expect = 9.8
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTP 62
+ L++G + GKS+++ + + + P
Sbjct: 26 GLRAPITLVLGLRRTGKSSIIKIGINELNLP 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,191,514
Number of extensions: 149576
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 75
Length of query: 890
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 797
Effective length of database: 1,130,706
Effective search space: 901172682
Effective search space used: 901172682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)