Query psy1165
Match_columns 461
No_of_seqs 133 out of 167
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 15:27:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eq5_A SKI-like protein; TGF-b 100.0 7.2E-45 2.5E-49 319.2 9.6 107 74-180 17-123 (125)
2 1sbx_A SKI oncogene, C-SKI; wi 100.0 2.3E-44 7.8E-49 309.7 9.9 105 74-179 1-105 (106)
3 1mr1_C SKI oncogene, SKI, C-SK 100.0 6E-43 2.1E-47 297.4 4.5 94 195-288 2-98 (99)
4 1mr1_C SKI oncogene, SKI, C-SK 100.0 2E-41 6.7E-46 288.1 3.8 92 358-449 2-96 (99)
5 1l8r_A Dachshund; winged-helix 100.0 6.5E-38 2.2E-42 267.5 10.4 95 85-179 4-100 (101)
6 3eq5_A SKI-like protein; TGF-b 99.5 6.6E-15 2.3E-19 129.7 0.4 50 294-343 74-123 (125)
7 1sbx_A SKI oncogene, C-SKI; wi 99.3 1.4E-13 4.9E-18 118.7 0.6 48 295-342 58-105 (106)
8 1l8r_A Dachshund; winged-helix 99.1 4.9E-12 1.7E-16 108.3 0.2 47 294-340 52-98 (101)
9 1oqj_A Glucocorticoid modulato 71.2 0.66 2.3E-05 39.5 -0.6 53 205-269 15-69 (97)
10 1ufn_A Putative nuclear protei 66.9 0.66 2.3E-05 39.4 -1.5 62 195-268 13-75 (94)
11 1h5p_A Nuclear autoantigen SP1 61.5 0.79 2.7E-05 39.0 -2.0 54 205-269 17-71 (95)
12 1ufn_A Putative nuclear protei 50.5 4.8 0.00016 34.1 1.0 65 353-429 8-73 (94)
13 1h5p_A Nuclear autoantigen SP1 27.6 9.1 0.00031 32.5 -0.9 55 364-430 14-69 (95)
14 1oqj_A Glucocorticoid modulato 21.7 18 0.00061 30.8 -0.2 51 368-430 15-67 (97)
15 3nis_A E3 ubiquitin-protein li 20.3 66 0.0023 26.3 2.9 48 218-266 28-77 (82)
No 1
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens}
Probab=100.00 E-value=7.2e-45 Score=319.17 Aligned_cols=107 Identities=63% Similarity=1.103 Sum_probs=97.8
Q ss_pred CCCeeecCCCCCCceeeeeEcCeeEEEEEECCeeecchHHHHHHHhhcCChHHHHhhhcccceeeccCCHHHHHHHHHcC
Q psy1165 74 QLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSG 153 (461)
Q Consensus 74 ~~Pil~~~D~~~~e~~~t~l~G~~I~~F~VgGe~rLCLpQi~~~vLk~fsl~~I~~~~~~L~I~c~~Ctp~QL~~Lk~~g 153 (461)
-.||.+.+|.+++|+.+|+|+|++|+||+||||+|||||||+|+|||||+++|||+++++|+|||++|||+||++||++|
T Consensus 17 ~~~~~s~ps~~s~e~~~t~l~G~~Ia~F~VgGe~rLCLPQi~~~vLk~fsl~~I~~~~~~L~I~c~~Ct~eQL~~Lk~~G 96 (125)
T 3eq5_A 17 NLYFQSMPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLG 96 (125)
T ss_dssp -----CCGGGCSSCCEEEEETTEEEEEEEETTEEEEEHHHHHHTTTTTSCHHHHHHHHHHHTCCCEECCHHHHHHHHHTT
T ss_pred CceeecCCCCCCCeeEEEEECCEEEEEEEECCEEEeEHHHHHHHHHHcCCHHHHHHHHHhccceeecCCHHHHHHHHHcC
Confidence 34566444444699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHhcCC
Q psy1165 154 ILPLTAASCGLMTKTDAERLCSTLLHQ 180 (461)
Q Consensus 154 ilP~~a~sCgLITktDAERLc~~ll~~ 180 (461)
|||++|+|||||||+||||||++||++
T Consensus 97 aiP~~a~~CgLITk~DaErLc~~ll~~ 123 (125)
T 3eq5_A 97 ILPFNAPSCGLITLTDAQRLCNALLRP 123 (125)
T ss_dssp SSCTTCCCCEEEEHHHHHHHHHHHHCC
T ss_pred CCCCCCccccceeHHHHHHHHHHhcCC
Confidence 999999999999999999999999996
No 2
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=100.00 E-value=2.3e-44 Score=309.74 Aligned_cols=105 Identities=71% Similarity=1.182 Sum_probs=103.0
Q ss_pred CCCeeecCCCCCCceeeeeEcCeeEEEEEECCeeecchHHHHHHHhhcCChHHHHhhhcccceeeccCCHHHHHHHHHcC
Q psy1165 74 QLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSG 153 (461)
Q Consensus 74 ~~Pil~~~D~~~~e~~~t~l~G~~I~~F~VgGe~rLCLpQi~~~vLk~fsl~~I~~~~~~L~I~c~~Ctp~QL~~Lk~~g 153 (461)
.+|+|+|+|+ ++|+++|+++|++|+||+||||+|||||||+|+|||+||+|+||+++++|+|+|++||++||++||++|
T Consensus 1 g~P~l~~~d~-~~~~~~t~l~G~~I~~F~vgGe~rlCLPQi~~~~Lk~~~l~~I~~~~~~L~I~~~~Ct~eQl~~Lk~~g 79 (106)
T 1sbx_A 1 GSHMFMPSDR-STERCETVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIYCSRCTADQLEILKVMG 79 (106)
T ss_dssp CCGGGCCCCC-CCCCEEEEETTEEEEEEEETTEEEEEHHHHHTTTTTTSCHHHHHHHHHHTTCCCEECCHHHHHHHHHTT
T ss_pred CCCcccCCCC-CcceeeEEEcCeEEEEEEECCEEEEehHHHHHHHHHhCCHHHHHHHHHHhCcccccCCHHHHHHHHHcC
Confidence 3689999999 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHhcC
Q psy1165 154 ILPLTAASCGLMTKTDAERLCSTLLH 179 (461)
Q Consensus 154 ilP~~a~sCgLITktDAERLc~~ll~ 179 (461)
|||++|+|||||||+||||||++||+
T Consensus 80 ~ip~~a~~CgLItk~DaerL~~~ll~ 105 (106)
T 1sbx_A 80 ILPFSAPSCGLITKTDAERLCNALLY 105 (106)
T ss_dssp SSCTTCCCCEEEEHHHHHHHHHHHHC
T ss_pred ccCCCCcccCceeHHHHHHHHHHHhc
Confidence 99999999999999999999999997
No 3
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein interaction, signaling protein; 2.85A {Homo sapiens} SCOP: d.217.1.2
Probab=100.00 E-value=6e-43 Score=297.36 Aligned_cols=94 Identities=46% Similarity=0.987 Sum_probs=89.3
Q ss_pred ccceeeecccCceeeeeeccccCCCCCCceeccccccccCCCceeEeeccCCCCCccccCCCCcCcccceeecccccC--
Q psy1165 195 FSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQN-- 272 (461)
Q Consensus 195 ~~f~V~HeCfggc~G~f~P~ly~~~~a~CI~C~~C~~~FsP~kFV~HsH~~~e~r~cHwGfDSanWr~yl~l~~~~~~-- 272 (461)
.+|+|||||||||+|+|+|+||++|+|+||+|.+|+++|||||||+|+|+.+|++||||||||||||+||+|+.+.++
T Consensus 2 ~af~V~HeC~g~c~G~f~P~~Y~s~~a~CI~C~~C~~~fsp~kFv~HsHr~~e~~tchwGfdsanWr~yl~l~~~~~~~~ 81 (99)
T 1mr1_C 2 SHMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILLSQDYTGKE 81 (99)
T ss_dssp CCCEEEECSTTCEEEEECGGGCCSTTCCCEEETTTCCEECHHHHTTCCCSCCCSSEEEESCCGGGHHHHCEECTTCCCTT
T ss_pred CccEEEEEecCccceEecccccCCCCCceeEhhcCCcEeCCCcEEEEeccCCCCcccCCCCchhccceeEEcccCCCCcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred -hHHHHHHHHHHHHhhh
Q psy1165 273 -YDQCLKILQIFKEQHI 288 (461)
Q Consensus 273 -~~~~~~~l~~~k~~~~ 288 (461)
.+++.++|+++||||+
T Consensus 82 ~~~~l~~~l~~~k~~f~ 98 (99)
T 1mr1_C 82 EQARLGRCLDDVKEKFD 98 (99)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 4678899999999995
No 4
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein interaction, signaling protein; 2.85A {Homo sapiens} SCOP: d.217.1.2
Probab=100.00 E-value=2e-41 Score=288.08 Aligned_cols=92 Identities=47% Similarity=1.022 Sum_probs=86.9
Q ss_pred ccceEEEeeccccccccccccccCCCCCccccccccccccCCceeeeccCCCCCccccCCCCCcccccceeccccccc--
Q psy1165 358 FSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQN-- 435 (461)
Q Consensus 358 ~~f~V~HeCfgkc~G~f~pelY~~~~a~CI~C~~C~~~fSP~kFV~HsHr~~e~rtcHwGFds~nWr~yl~l~~~~~~-- 435 (461)
++|+|||||||||+|+|+|+||++++|+||+|.+|++||||+|||+|+|+.+|+|||||||||+|||+||+|+.+.++
T Consensus 2 ~af~V~HeC~g~c~G~f~P~~Y~s~~a~CI~C~~C~~~fsp~kFv~HsHr~~e~~tchwGfdsanWr~yl~l~~~~~~~~ 81 (99)
T 1mr1_C 2 SHMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILLSQDYTGKE 81 (99)
T ss_dssp CCCEEEECSTTCEEEEECGGGCCSTTCCCEEETTTCCEECHHHHTTCCCSCCCSSEEEESCCGGGHHHHCEECTTCCCTT
T ss_pred CccEEEEEecCccceEecccccCCCCCceeEhhcCCcEeCCCcEEEEeccCCCCcccCCCCchhccceeEEcccCCCCcc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred -HHHHHHHHHHHhhh
Q psy1165 436 -YDQCLKILQIFKEQ 449 (461)
Q Consensus 436 -~~~~~~~l~~~ke~ 449 (461)
.+++..+|+++||.
T Consensus 82 ~~~~l~~~l~~~k~~ 96 (99)
T 1mr1_C 82 EQARLGRCLDDVKEK 96 (99)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 46788999999885
No 5
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=100.00 E-value=6.5e-38 Score=267.54 Aligned_cols=95 Identities=27% Similarity=0.446 Sum_probs=91.7
Q ss_pred CCceeeeeEcCeeEEEEEECCeeecchHHHHHHHhhcCC--hHHHHhhhcccceeeccCCHHHHHHHHHcCCCCCCCccc
Q psy1165 85 RSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFS--LPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASC 162 (461)
Q Consensus 85 ~~e~~~t~l~G~~I~~F~VgGe~rLCLpQi~~~vLk~fs--l~~I~~~~~~L~I~c~~Ctp~QL~~Lk~~gilP~~a~sC 162 (461)
.+++.+|+++|++|+||+||||+|||||||+|+|||||+ +|+||+++++|+|+|++||++||++||.+||||++|+||
T Consensus 4 ~~~~~~~~~~G~~Ia~F~v~Ge~rlCLpQi~~~~Lk~~~~~ihtV~~k~~~L~I~~~~Ct~eQl~~Lk~~gaip~~~~rC 83 (101)
T 1l8r_A 4 NNECKMVDLRGAKVASFTVEGCELICLPQAFDLFLKHLVGGLHTVYTKLKRLEITPVVCNVEQVRILRGLGAIQPGVNRC 83 (101)
T ss_dssp GGCCEEEEETTEEEEEEEETTEEEEEHHHHHHHHTTTTTCCHHHHHHHHHHTTCCCEECCHHHHHHHHHHTSSCTTCCCC
T ss_pred CceeEEEEECCEEEEEEEECCEEEeeHHHHHHHHHHhccchhhHHHHHHHhhCceeeeCCHHHHHHHHHcCCCCCCCCcc
Confidence 478999999999999999999999999999999999998 689999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhcC
Q psy1165 163 GLMTKTDAERLCSTLLH 179 (461)
Q Consensus 163 gLITktDAERLc~~ll~ 179 (461)
|||||+||||||+++..
T Consensus 84 ~LItk~DaerL~~~c~~ 100 (101)
T 1l8r_A 84 KLISRKDFETLYNDCTN 100 (101)
T ss_dssp EEEEHHHHHHHHHHHHC
T ss_pred cceeHHHHHHHHHHhcc
Confidence 99999999999999864
No 6
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens}
Probab=99.45 E-value=6.6e-15 Score=129.70 Aligned_cols=50 Identities=48% Similarity=0.775 Sum_probs=45.3
Q ss_pred CCccccCCCCCChhhHHHHHhcCCCCCCCCccCCCCCCchHHHHHHhccC
Q psy1165 294 GKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQ 343 (461)
Q Consensus 294 gKRKq~~rv~ctp~QLe~LK~~giLP~sa~sCGLITKtdAERLc~aLL~~ 343 (461)
-||-+...++|+++||++||.+||||.+++|||||||+||||||++|||.
T Consensus 74 ~~~L~I~c~~Ct~eQL~~Lk~~GaiP~~a~~CgLITk~DaErLc~~ll~~ 123 (125)
T 3eq5_A 74 CDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRP 123 (125)
T ss_dssp HHHHTCCCEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHHHHHHHCC
T ss_pred HHhccceeecCCHHHHHHHHHcCCCCCCCccccceeHHHHHHHHHHhcCC
Confidence 35555667899999999999999999999999999999999999999964
No 7
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=99.33 E-value=1.4e-13 Score=118.68 Aligned_cols=48 Identities=56% Similarity=0.906 Sum_probs=43.9
Q ss_pred CccccCCCCCChhhHHHHHhcCCCCCCCCccCCCCCCchHHHHHHhcc
Q psy1165 295 KRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLH 342 (461)
Q Consensus 295 KRKq~~rv~ctp~QLe~LK~~giLP~sa~sCGLITKtdAERLc~aLL~ 342 (461)
||-+...++|+++|+++||.+|+||.++++||||||+||||||++||+
T Consensus 58 ~~L~I~~~~Ct~eQl~~Lk~~g~ip~~a~~CgLItk~DaerL~~~ll~ 105 (106)
T 1sbx_A 58 DELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLY 105 (106)
T ss_dssp HHTTCCCEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHHHHHHHC
T ss_pred HHhCcccccCCHHHHHHHHHcCccCCCCcccCceeHHHHHHHHHHHhc
Confidence 444456688999999999999999999999999999999999999996
No 8
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=99.14 E-value=4.9e-12 Score=108.29 Aligned_cols=47 Identities=30% Similarity=0.441 Sum_probs=42.4
Q ss_pred CCccccCCCCCChhhHHHHHhcCCCCCCCCccCCCCCCchHHHHHHh
Q psy1165 294 GKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTL 340 (461)
Q Consensus 294 gKRKq~~rv~ctp~QLe~LK~~giLP~sa~sCGLITKtdAERLc~aL 340 (461)
-||-+..+++|+++||++||.+|+||.++++||||||+||||||++.
T Consensus 52 ~~~L~I~~~~Ct~eQl~~Lk~~gaip~~~~rC~LItk~DaerL~~~c 98 (101)
T 1l8r_A 52 LKRLEITPVVCNVEQVRILRGLGAIQPGVNRCKLISRKDFETLYNDC 98 (101)
T ss_dssp HHHTTCCCEECCHHHHHHHHHHTSSCTTCCCCEEEEHHHHHHHHHHH
T ss_pred HHhhCceeeeCCHHHHHHHHHcCCCCCCCCcccceeHHHHHHHHHHh
Confidence 35555667899999999999999999999999999999999999874
No 9
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=71.17 E-value=0.66 Score=39.54 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=42.8
Q ss_pred Cceeeeeecccc--CCCCCCceeccccccccCCCceeEeeccCCCCCccccCCCCcCcccceeeccc
Q psy1165 205 GKCKGVCMPELF--TDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEE 269 (461)
Q Consensus 205 ggc~G~f~P~ly--~~~~a~CI~C~~C~~~FsP~kFV~HsH~~~e~r~cHwGfDSanWr~yl~l~~~ 269 (461)
|...|+++-..| ...+-+||+... .+|||..|+...=+ -.|-||++-|+....
T Consensus 15 G~~~GiL~~~kf~~~G~~~KCI~~~~--~w~TP~EFe~~~gk----------~~sKdWK~sIR~~G~ 69 (97)
T 1oqj_A 15 GESKAILLWKKFVCPGINVKCVKFND--QLISPKHFVHLAGK----------STLKDWKRAIRLGGI 69 (97)
T ss_dssp TTEEEEEEGGGCCTTCTTSCCEEETT--EEECHHHHHHHTTC----------GGGSCHHHHSEETTE
T ss_pred CCeEEEEEhhhhccCCCCccCccCCC--EEEChHHHhhhcCc----------CCCCCcchheEECCe
Confidence 567899988887 678899999985 99999999976544 356679999988754
No 10
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=66.92 E-value=0.66 Score=39.36 Aligned_cols=62 Identities=23% Similarity=0.406 Sum_probs=45.8
Q ss_pred ccceeeecccCceeeeeeccccCC-CCCCceeccccccccCCCceeEeeccCCCCCccccCCCCcCcccceeecc
Q psy1165 195 FSFKVYHECFGKCKGVCMPELFTD-GESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVE 268 (461)
Q Consensus 195 ~~f~V~HeCfggc~G~f~P~ly~~-~~a~CI~C~~C~~~FsP~kFV~HsH~~~e~r~cHwGfDSanWr~yl~l~~ 268 (461)
++..|-=.| |...|+++.++|.+ .+-+||+..+ +.+|||..|+...=+ -.|-||++-|+...
T Consensus 13 ~~~~lPVtC-G~~~G~L~k~k~~~G~~~kCI~~~d-g~w~TP~EFe~~~g~----------~~sKdWKrSIr~~G 75 (94)
T 1ufn_A 13 FSPTLPVTC-GKAKGTLFQEKLKQGASKKCIQNEA-GDWLTVKEFLNEGGR----------ATSKDWKGVIRCNG 75 (94)
T ss_dssp GSSEEEEEE-TTEEEEEEHHHHHSCTTSCCEECTT-CCEECHHHHHHHHTC----------TTCSCHHHHCEETT
T ss_pred cCCccceee-cCcEEEEEHHHhcCCCCcccEEeCC-CcEEChHHhhhhcCc----------ccccCcceeeEECC
Confidence 333333346 56899999999964 2678998854 579999999987655 36778999999864
No 11
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=61.46 E-value=0.79 Score=38.99 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=42.8
Q ss_pred CceeeeeeccccCC-CCCCceeccccccccCCCceeEeeccCCCCCccccCCCCcCcccceeeccc
Q psy1165 205 GKCKGVCMPELFTD-GESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEE 269 (461)
Q Consensus 205 ggc~G~f~P~ly~~-~~a~CI~C~~C~~~FsP~kFV~HsH~~~e~r~cHwGfDSanWr~yl~l~~~ 269 (461)
|...|+++.++|.+ .+-+||+... +.+|||..|+...=+ -.|-||++-|+....
T Consensus 17 G~~~G~L~k~kf~~G~~~KCI~~~~-g~w~TP~EFe~~~g~----------~~sKdWKrSIR~~G~ 71 (95)
T 1h5p_A 17 GEVKGTLYKERFKQGTSKKCIQSED-KKWFTPREFEIEGDR----------GASKNWKLSIRCGGY 71 (95)
T ss_dssp TTEEEEEEHHHHTTGGGSCCEEETT-TEEECHHHHHHHHTC----------STTCCHHHHCEETTE
T ss_pred CCcEEEEehhhhcCCCCccCeEeCC-CeEEChHHhhhhcCc----------ccCcCcceeeEECCE
Confidence 56899999999853 4578888755 689999999987655 367789999998754
No 12
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=50.51 E-value=4.8 Score=34.11 Aligned_cols=65 Identities=23% Similarity=0.447 Sum_probs=47.4
Q ss_pred cccccccceEEEeeccccccccccccccC-CCCCccccccccccccCCceeeeccCCCCCccccCCCCCcccccceec
Q psy1165 353 DKIVTFSFKVYHECFGKCKGVCMPELFTD-GESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLA 429 (461)
Q Consensus 353 ~~~~~~~f~V~HeCfgkc~G~f~pelY~~-~~a~CI~C~~C~~~fSP~kFV~HsHr~~e~rtcHwGFds~nWr~yl~l 429 (461)
|...+|+..+-=.| |...|+++-+.|.. ...+||+..+ +.+|+|..|+...=+. .|-+|++-|..
T Consensus 8 ~~~vd~~~~lPVtC-G~~~G~L~k~k~~~G~~~kCI~~~d-g~w~TP~EFe~~~g~~----------~sKdWKrSIr~ 73 (94)
T 1ufn_A 8 NDAVDFSPTLPVTC-GKAKGTLFQEKLKQGASKKCIQNEA-GDWLTVKEFLNEGGRA----------TSKDWKGVIRC 73 (94)
T ss_dssp SSGGGGSSEEEEEE-TTEEEEEEHHHHHSCTTSCCEECTT-CCEECHHHHHHHHTCT----------TCSCHHHHCEE
T ss_pred CcccccCCccceee-cCcEEEEEHHHhcCCCCcccEEeCC-CcEEChHHhhhhcCcc----------cccCcceeeEE
Confidence 33445655555666 56789999998854 3778999743 4699999999877653 34689999988
No 13
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=27.56 E-value=9.1 Score=32.50 Aligned_cols=55 Identities=25% Similarity=0.533 Sum_probs=41.0
Q ss_pred EeeccccccccccccccC-CCCCccccccccccccCCceeeeccCCCCCccccCCCCCcccccceecc
Q psy1165 364 HECFGKCKGVCMPELFTD-GESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAV 430 (461)
Q Consensus 364 HeCfgkc~G~f~pelY~~-~~a~CI~C~~C~~~fSP~kFV~HsHr~~e~rtcHwGFds~nWr~yl~l~ 430 (461)
=.| |...|+++-+.|.. ...+||+.-+ +-+|+|..|+...=+. .|-+|++-|...
T Consensus 14 VtC-G~~~G~L~k~kf~~G~~~KCI~~~~-g~w~TP~EFe~~~g~~----------~sKdWKrSIR~~ 69 (95)
T 1h5p_A 14 VTC-GEVKGTLYKERFKQGTSKKCIQSED-KKWFTPREFEIEGDRG----------ASKNWKLSIRCG 69 (95)
T ss_dssp EEE-TTEEEEEEHHHHTTGGGSCCEEETT-TEEECHHHHHHHHTCS----------TTCCHHHHCEET
T ss_pred eee-CCcEEEEehhhhcCCCCccCeEeCC-CeEEChHHhhhhcCcc----------cCcCcceeeEEC
Confidence 344 56788988888843 4567999644 5799999999887553 245899999883
No 14
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=21.71 E-value=18 Score=30.78 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=39.2
Q ss_pred cccccccccccc--cCCCCCccccccccccccCCceeeeccCCCCCccccCCCCCcccccceecc
Q psy1165 368 GKCKGVCMPELF--TDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAV 430 (461)
Q Consensus 368 gkc~G~f~pelY--~~~~a~CI~C~~C~~~fSP~kFV~HsHr~~e~rtcHwGFds~nWr~yl~l~ 430 (461)
|.-.|+++-+.| .....+||+..+ .+|+|..|+...=+. .|-+|++-|...
T Consensus 15 G~~~GiL~~~kf~~~G~~~KCI~~~~--~w~TP~EFe~~~gk~----------~sKdWK~sIR~~ 67 (97)
T 1oqj_A 15 GESKAILLWKKFVCPGINVKCVKFND--QLISPKHFVHLAGKS----------TLKDWKRAIRLG 67 (97)
T ss_dssp TTEEEEEEGGGCCTTCTTSCCEEETT--EEECHHHHHHHTTCG----------GGSCHHHHSEET
T ss_pred CCeEEEEEhhhhccCCCCccCccCCC--EEEChHHHhhhcCcC----------CCCCcchheEEC
Confidence 456788777777 567789999874 999999999877543 235799998873
No 15
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=20.35 E-value=66 Score=26.25 Aligned_cols=48 Identities=17% Similarity=0.473 Sum_probs=34.9
Q ss_pred CCCCCceeccccccc--cCCCceeEeeccCCCCCccccCCCCcCcccceee
Q psy1165 218 DGESRCIQCLECHGF--FSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLA 266 (461)
Q Consensus 218 ~~~a~CI~C~~C~~~--FsP~kFV~HsH~~~e~r~cHwGfDSanWr~yl~l 266 (461)
..+..|+.|.+|=.. ---.+|+++.......+.|++| |.+.|+.-..=
T Consensus 28 ~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCG-D~eawk~~~fC 77 (82)
T 3nis_A 28 GCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCG-DEEAWNSPLHC 77 (82)
T ss_dssp BSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTT-CGGGBSSCCCC
T ss_pred CCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCC-CHHHhCCCCCC
Confidence 346778888888433 3457777777766678999998 88889875543
Done!