RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1165
(461 letters)
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC
stockholm, structural GEN consortium, SGC; 2.45A {Homo
sapiens}
Length = 125
Score = 142 bits (359), Expect = 3e-41
Identities = 68/120 (56%), Positives = 87/120 (72%)
Query: 62 EPYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRD 121
+ + + L + S +EL++T+LEGE+ISCF VGGEKRLCLPQ+LNSVLR+
Sbjct: 5 HHHSSGVDLGTENLYFQSMPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLRE 64
Query: 122 FSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQR 181
F+L QIN VCD+L I+CSRC +QL ILK+ GILP A SCGL+T TDA+RLC+ LL R
Sbjct: 65 FTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 124
Score = 60.1 bits (145), Expect = 3e-11
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 295 KRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQR 344
+ C +QL ILK+ GILP A SCGL+T TDA+RLC+ LL R
Sbjct: 75 DELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 124
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein
interaction, signaling protein; 2.85A {Homo sapiens}
SCOP: d.217.1.2
Length = 99
Score = 137 bits (346), Expect = 1e-39
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 195 FSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWG 254
+VYHECFGKCKG+ +PEL++ + CIQCL+C + P KFV H H + ENRTCHWG
Sbjct: 2 SHMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWG 61
Query: 255 FESVKWRSYLLAVEEQQNYDQCLKILQIFKE 285
F+S WR+Y+L ++ ++ ++ + +
Sbjct: 62 FDSANWRAYILLSQDYTGKEEQARLGRCLDD 92
Score = 137 bits (346), Expect = 1e-39
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 358 FSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWG 417
+VYHECFGKCKG+ +PEL++ + CIQCL+C + P KFV H H + ENRTCHWG
Sbjct: 2 SHMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWG 61
Query: 418 FESVKWRSYLLAVEEQQNYDQCLKILQIFKE 448
F+S WR+Y+L ++ ++ ++ + +
Sbjct: 62 FDSANWRAYILLSQDYTGKEEQARLGRCLDD 92
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A
{Homo sapiens} SCOP: a.6.1.4
Length = 106
Score = 134 bits (337), Expect = 2e-38
Identities = 73/102 (71%), Positives = 84/102 (82%)
Query: 78 LTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIF 137
+ +E ET+LEGETISCFVVGGEKRLCLPQILNSVLRDFSL QIN VCD+L I+
Sbjct: 4 MFMPSDRSTERCETVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIY 63
Query: 138 CSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLH 179
CSRC +QLEILK+ GILP +A SCGL+TKTDAERLC+ LL+
Sbjct: 64 CSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLY 105
Score = 59.7 bits (144), Expect = 2e-11
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 295 KRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLH 342
+ C +QLEILK+ GILP +A SCGL+TKTDAERLC+ LL+
Sbjct: 58 DELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLY 105
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP:
a.6.1.4
Length = 101
Score = 115 bits (289), Expect = 2e-31
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 86 SELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDF--SLPQINQVCDDLQIFCSRCNP 143
+E L G ++ F V G + +CLPQ + L+ L + L+I CN
Sbjct: 5 NECKMVDLRGAKVASFTVEGCELICLPQAFDLFLKHLVGGLHTVYTKLKRLEITPVVCNV 64
Query: 144 EQLEILKLSGILPLTAASCGLMTKTDAERLCS 175
EQ+ IL+ G + C L+++ D E L +
Sbjct: 65 EQVRILRGLGAIQPGVNRCKLISRKDFETLYN 96
Score = 53.9 bits (129), Expect = 2e-09
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 279 ILQIFKEQHIETTTSGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCS 338
L+ T KR + + CN EQ+ IL+ G + C L+++ D E L +
Sbjct: 37 FLKHLVGGLHTVYTKLKRLEITPVVCNVEQVRILRGLGAIQPGVNRCKLISRKDFETLYN 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 3e-05
Identities = 81/547 (14%), Positives = 135/547 (24%), Gaps = 207/547 (37%)
Query: 9 PAYN---PHLKKVLKTYQLSAVKSLQ-------------GPST----VLRTEGVVT---- 44
YN L+ A+ L+ G + V + V
Sbjct: 127 AKYNVSRLQPYLKLRQ----ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 45 ----VTLVPKKEPADSAEPSPEPYITPPPPPIQQL-PILTTSDQSRSELSETL-LEGETI 98
+ L P E +Q+L + + SRS+ S + L +I
Sbjct: 183 KIFWLNLKNCNSPETVLEM------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 99 SCFVVGGEKR--LCLPQILNS--VLRDFSLPQINQVCD--DLQIFCSRCNPEQLEIL--- 149
E R L N VL + V + F C +IL
Sbjct: 231 Q-----AELRRLLKSKPYENCLLVLLN--------VQNAKAWNAFNLSC-----KILLTT 272
Query: 150 -------KLSGI----LPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFK 198
LS + L S L T + + L L RP PR +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 199 VYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFE-S 257
+ E DG + HV+ E S
Sbjct: 332 I----IA--------ESIRDGLAT-------------WDNWKHVNCDKLTTI----IESS 362
Query: 258 VKWRSYLLAVEEQQNYDQCLKILQIFKEQ-HIETTTSGKRKQTHRLPCNPEQ-LEIL--- 312
+ L E ++ +D+ L +F HI P L ++
Sbjct: 363 LN---VLEPAEYRKMFDR----LSVFPPSAHI-----------------PTILLSLIWFD 398
Query: 313 KLSGILPLTAASC---GLMTKTDAERLCS---------------TLLHQR---------- 344
+ + + L+ K E S LH+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 345 ---PGPTPRHIDKIVTFSFKVYHECFGKC----KGVCMPELFTDGESRCIQCLECHGF-F 396
P ++D+ +S +H + +F D F F
Sbjct: 459 FDSDDLIPPYLDQYF-YSHIGHH--LKNIEHPERMTLFRMVFLD-------------FRF 502
Query: 397 SPQKFVCHVHLSSENRTCHWGFESV-----KWRSYLLAVEEQQNYDQCLKILQIFKEQHI 451
QK + H S + ++ Y+ + Y++ + + F +
Sbjct: 503 LEQK-IRH---DSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIE 556
Query: 452 ETTTSGK 458
E K
Sbjct: 557 ENLICSK 563
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 56/177 (31%)
Query: 208 KGVCMPELFTDGES-RCI------QCLECHGFFSPQKFVCHVHLSSEN---RTCHWGFE- 256
+G+ M +L+ ++ + + + +GF S V N T H+G E
Sbjct: 1629 QGMGM-DLYKTSKAAQDVWNRADNHFKDTYGF-SILDIV------INNPVNLTIHFGGEK 1680
Query: 257 SVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTT------SGKRKQTHRLPCN--P-- 306
+ R A+ + D LK +IFKE + +T+ G T P
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ----FTQPAL 1736
Query: 307 -----EQLEILKLSGILPL------------TA-ASC-GLMTKTDAERLCSTLLHQR 344
E LK G++P A AS +M+ ++ R
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE----VVFYR 1789
Score = 35.4 bits (81), Expect = 0.044
Identities = 42/223 (18%), Positives = 67/223 (30%), Gaps = 63/223 (28%)
Query: 5 IG---QQPAYNPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKEPADSAEP-- 59
IG + AY P+ + S + PS +L + + +S P
Sbjct: 306 IGVRCYE-AY-PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 60 ---------SPEPY-ITPPPPPIQQLPILTTS----------DQSRSELSE--------- 90
+ ++ PP Q L L + DQSR SE
Sbjct: 364 KQVEISLVNGAKNLVVSGPP---QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 91 ---------TLLEG--ETISCFVVGGE-----KRLCLPQIL---NSVLRDFSLPQINQVC 131
LL + I+ +V K + +P S LR S ++
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 132 DDLQIFCSRCNPEQLEILKLSGIL---PLTAASCGLMTKTDAE 171
D I E K + IL P A+ G++T + +
Sbjct: 481 D--CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 30.0 bits (67), Expect = 2.1
Identities = 63/449 (14%), Positives = 124/449 (27%), Gaps = 144/449 (32%)
Query: 30 LQGPST---VLRTEGVVTVT-LVPK---------KEPADSAEPSPEPYITPPPPPIQQLP 76
+ ST L + G + LVP +E + P P P
Sbjct: 1 MDAYSTRPLTL-SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT---- 55
Query: 77 ILTTSDQSRSELSETLLEGETISCFV---VGGEKRLCLPQILNSVLRDFS---LPQINQV 130
+ +EL L +V V K Q+LN L +F L
Sbjct: 56 -------TPAELVGKFLG------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---- 98
Query: 131 CDDLQIFCSRCNPE-QLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHI 189
+D+ ++ E ++K ++ + + + ++ S L R +
Sbjct: 99 -NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF--------RAV 149
Query: 190 DKIVTFSFKVYHECFGKCKG-----VCMPEL---FTDGES-------RCIQCLECHGFFS 234
+ ++ FG G EL + + L
Sbjct: 150 G---EGNAQLV-AIFG---GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL------- 195
Query: 235 PQKFVCHVHLSSENRTCHWGFESVKW---------RSYLLAVEEQQNYDQCLKILQIFKE 285
+ + + G ++W + YLL++ ++ + +
Sbjct: 196 -SELIRTTL--DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS------CPLIGVIQL 246
Query: 286 QHIETTTSGKRKQTHRLPCNPEQL-EILK-LSGILP--LTAASCGLMTKT-----DAERL 336
H T L P +L LK +G +TA + T + + R
Sbjct: 247 AHYVVT-------AKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-ETDSWESFFVSVRK 298
Query: 337 CSTLL-------HQRPGPTPRHIDKIVTFSFKVYHECFGKCKGV--CMPELFTDGESRCI 387
T+L ++ P + + + +GV M L ++
Sbjct: 299 AITVLFFIGVRCYEA---YPN-----TSLPPSILEDSLENNEGVPSPM--LSISNLTQ-- 346
Query: 388 QCLECH-----GFFSPQKFVCHVHLSSEN 411
+ ++ + K V +S N
Sbjct: 347 EQVQDYVNKTNSHLPAGK---QVEISLVN 372
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix
repeat, transcriptional repressor, structural genomics,
NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Length = 80
Score = 27.4 bits (61), Expect = 2.5
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 261 RSYLLAVEEQ-----QNYDQCLKILQIFKEQHIET 290
+YL V+ + Y+ L+I++ FK Q I+T
Sbjct: 14 LTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDT 48
Score = 27.4 bits (61), Expect = 2.5
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 424 RSYLLAVEEQ-----QNYDQCLKILQIFKEQHIET 453
+YL V+ + Y+ L+I++ FK Q I+T
Sbjct: 14 LTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDT 48
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 29.1 bits (64), Expect = 2.6
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 44 TVTLVPKKEPADSAEPSPEPYITPPPPPIQQLPILTTSDQS 84
T T K S P+ TP +P + +S
Sbjct: 179 TATPTTKPTAFASTMPTVTLTPTPTATTTTTIPTAVPTTES 219
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 28.9 bits (64), Expect = 3.2
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 18 VLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKEPADSAEPSPEPYITPPPPPIQQLP 76
V + +S + ++ P+ VT+ EP + +P PEP + P P P
Sbjct: 14 VPRGSHMSVHQVIELPAPAQPIS--VTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPE 70
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional
repressor, gene regulation; NMR {Mus musculus}
Length = 77
Score = 26.2 bits (58), Expect = 6.3
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 261 RSYLLAVEEQ-----QNYDQCLKILQIFKEQHIETTTSGKR 296
+YL V+ + Y+ L+I++ FK Q I+T +R
Sbjct: 8 LTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRR 48
Score = 26.2 bits (58), Expect = 6.3
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 424 RSYLLAVEEQ-----QNYDQCLKILQIFKEQHIETTTSGKR 459
+YL V+ + Y+ L+I++ FK Q I+T +R
Sbjct: 8 LTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRR 48
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 27.9 bits (61), Expect = 7.8
Identities = 7/49 (14%), Positives = 11/49 (22%)
Query: 26 AVKSLQGPSTVLRTEGVVTVTLVPKKEPADSAEPSPEPYITPPPPPIQQ 74
K L G G+ + + P + P P
Sbjct: 292 VNKPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAP 340
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 213
Score = 27.4 bits (59), Expect = 8.6
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 42 VVTVTLVPKKEPADSAEPSPEPYITPPP------PPIQQLPILTTSDQSRSELSETLLE 94
T + EP + +P + P PP+ P T S + + E +L E
Sbjct: 5 AATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFE 63
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 27.3 bits (59), Expect = 9.6
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 49 PKKEPADSAEPSPEPYITPPPPP 71
P D A +P T PP
Sbjct: 157 PPVSSDDEASSQSKPLATQPPVL 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.431
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,817,162
Number of extensions: 400507
Number of successful extensions: 1173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 52
Length of query: 461
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,993,456
Effective search space: 1453617984
Effective search space used: 1453617984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)