RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1165
(461 letters)
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId:
9606]}
Length = 106
Score = 149 bits (379), Expect = 9e-45
Identities = 73/104 (70%), Positives = 84/104 (80%)
Query: 76 PILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQ 135
+ +E ET+LEGETISCFVVGGEKRLCLPQILNSVLRDFSL QIN VCD+L
Sbjct: 2 SHMFMPSDRSTERCETVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELH 61
Query: 136 IFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLH 179
I+CSRC +QLEILK+ GILP +A SCGL+TKTDAERLC+ LL+
Sbjct: 62 IYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLY 105
Score = 69.4 bits (170), Expect = 3e-15
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 295 KRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLH 342
+ C +QLEILK+ GILP +A SCGL+TKTDAERLC+ LL+
Sbjct: 58 DELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLY 105
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski
{Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 135 bits (342), Expect = 1e-39
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 196 SFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGF 255
+VYHECFGKCKG+ +PEL++ + CIQCL+C + P KFV H H + ENRTCHWGF
Sbjct: 2 HMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGF 61
Query: 256 ESVKWRSYLLAVEEQQNYDQCLKILQIFKE 285
+S WR+Y+L ++ ++ ++ + +
Sbjct: 62 DSANWRAYILLSQDYTGKEEQARLGRCLDD 91
Score = 135 bits (342), Expect = 1e-39
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 359 SFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGF 418
+VYHECFGKCKG+ +PEL++ + CIQCL+C + P KFV H H + ENRTCHWGF
Sbjct: 2 HMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGF 61
Query: 419 ESVKWRSYLLAVEEQQNYDQCLKILQIFKE 448
+S WR+Y+L ++ ++ ++ + +
Sbjct: 62 DSANWRAYILLSQDYTGKEEQARLGRCLDD 91
>d1l8ra_ a.6.1.4 (A:) Retinal determination protein Dachshund {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 129 bits (327), Expect = 2e-37
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 85 RSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDF--SLPQINQVCDDLQIFCSRCN 142
+E L G ++ F V G + +CLPQ + L+ L + L+I CN
Sbjct: 4 NNECKMVDLRGAKVASFTVEGCELICLPQAFDLFLKHLVGGLHTVYTKLKRLEITPVVCN 63
Query: 143 PEQLEILKLSGILPLTAASCGLMTKTDAERLC 174
EQ+ IL+ G + C L+++ D E L
Sbjct: 64 VEQVRILRGLGAIQPGVNRCKLISRKDFETLY 95
Score = 61.0 bits (148), Expect = 2e-12
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 295 KRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLC 337
KR + + CN EQ+ IL+ G + C L+++ D E L
Sbjct: 53 KRLEITPVVCNVEQVRILRGLGAIQPGVNRCKLISRKDFETLY 95
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId:
10090]}
Length = 85
Score = 26.7 bits (59), Expect = 1.7
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 262 SYLLAVEEQ-----QNYDQCLKILQIFKEQHIETTTSGKRKQT 299
SY+ ++ + + Y L+IL ++++ + T R +
Sbjct: 12 SYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMS 54
Score = 26.0 bits (57), Expect = 3.5
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 425 SYLLAVEEQ-----QNYDQCLKILQIFKEQHIETTTSG 457
SY+ ++ + + Y L+IL ++++ + T
Sbjct: 12 SYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRP 49
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces
lavendulae [TaxId: 1914]}
Length = 237
Score = 27.6 bits (60), Expect = 3.1
Identities = 17/156 (10%), Positives = 30/156 (19%), Gaps = 9/156 (5%)
Query: 174 CSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFF 233
L R I + + E V + ++ E
Sbjct: 54 PEEALELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMW--------ALDEVRAAA 105
Query: 234 SPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQI-FKEQHIETTT 292
+ L ++ G + W + A Q E
Sbjct: 106 RAAGRTARIQLKADTGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGH 165
Query: 293 SGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLM 328
R Q E + + A S +
Sbjct: 166 PSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATL 201
Score = 26.4 bits (57), Expect = 7.0
Identities = 11/102 (10%), Positives = 21/102 (20%), Gaps = 8/102 (7%)
Query: 337 CSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFF 396
L R I + + E V + ++ E
Sbjct: 54 PEEALELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMW--------ALDEVRAAA 105
Query: 397 SPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQ 438
+ L ++ G + W + A Q
Sbjct: 106 RAAGRTARIQLKADTGLGRNGCQPADWAELVGAAVAAQAEGT 147
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 26.6 bits (58), Expect = 3.7
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 276 CLKILQIFKEQHIETTTSGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAER 335
L ILQ+ + K K + +++ + + + +T + +
Sbjct: 36 RLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTE----SEVMKYITSLNEDS 91
Query: 336 LCSTLLHQRPGPTPRHID 353
L Q P + I+
Sbjct: 92 TVHGFLVQLPLDSENSIN 109
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 25.6 bits (56), Expect = 4.6
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 49 PKKEPADSAEPSPEPYITPPPPPIQQL 75
+E EP PE PP I
Sbjct: 3 VIQETIVPKEPPPEFEFIADPPSISAF 29
>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 392
Score = 26.5 bits (58), Expect = 7.5
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 255 FESVKW----RSYLLAVEEQQN---YDQCLKILQIFKEQHIE 289
S++ R ++L+ + YD C+K L + H++
Sbjct: 296 LCSLESNPSVREFVLSKGDAGLREAYDACVKALVSLRSYHLQ 337
Score = 26.5 bits (58), Expect = 7.5
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 418 FESVKW----RSYLLAVEEQQN---YDQCLKILQIFKEQHIE 452
S++ R ++L+ + YD C+K L + H++
Sbjct: 296 LCSLESNPSVREFVLSKGDAGLREAYDACVKALVSLRSYHLQ 337
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.431
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,747,492
Number of extensions: 86729
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 41
Length of query: 461
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,199,356
Effective search space: 447359788
Effective search space used: 447359788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)