BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11652
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 58/252 (23%)
Query: 35 EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP 94
D+ AE AN ++ K T + +N ++ I+ I+ N D +Q + LP
Sbjct: 14 PDDAFAETIKAN----LKKKSVTDAVTQNELNSIDQ------IIANNSDIKSVQGIQYLP 63
Query: 95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXXXXXXX 154
+ L++ N L + L +T+L +++L+ N ++ +PN +KL
Sbjct: 64 N-VRYLALGGNKLHDISALKELTNLTYLILTGNQLQS--LPN-GVFDKLTN--------- 110
Query: 155 XXXXXXYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEF 213
+K+L+L NQ+ L F L N+ LYL N++ + F+ L + L
Sbjct: 111 --------LKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKL-TNLTR 161
Query: 214 LDLENNRLTNINQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
LDL+NN+L ++ + F+ L LK +SL+ N+L +PD
Sbjct: 162 LDLDNNQLQSLPE-----------------------GVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 274 FIHNK--RLSHL 283
+ ++ L+H+
Sbjct: 199 GVFDRLTSLTHI 210
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFLNEL 293
++ + N F+ L NLK + L N+L +PD + +K L++L L +N L L
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSL 148
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
LIL+ NQ+ L F L N+ L L N++ + D F+ L + L +L L +N+L
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNLTYLYLYHNQL--- 145
Query: 225 NQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSH 282
+ + F+ L NL + L N+L +P+ + +K +L
Sbjct: 146 --------------------QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 283 LNLGYNFLNEL 293
L+L N L +
Sbjct: 186 LSLNDNQLKSV 196
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 49 PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
P++ L ++ G N + ++ L + + D+NLL+TL LP ++E L+V +NYL
Sbjct: 211 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT 270
Query: 109 NYLELNRMTSLKWIVLSNN 127
+ EL + SL ++ +S N
Sbjct: 271 DLPELPQ--SLTFLDVSEN 287
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 36 DNQIAELETANWS----PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLD 91
D Q ELE N PE+ L +L N + ++ L +S+ L +D+N L+ L
Sbjct: 70 DRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELP--QSLKSLLVDNNNLKALS 127
Query: 92 SLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF 132
LP +E L V+NN L EL + LK I + NN +K+
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 168
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 49 PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
P++ L + G N + ++ L + + D+N L+ L LP ++E++ NN L
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228
Query: 109 NYLELNRMTSLKWIVLSNNYIK 130
EL + L I NN +K
Sbjct: 229 ELPELQNLPFLTTIYADNNLLK 250
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELN 114
L L + N + ++ L + +++D+N L+ L LP ++E ++ NN L EL
Sbjct: 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQ 192
Query: 115 RMTSLKWIVLSNNYIKEF 132
+ L I NN +K+
Sbjct: 193 NLPFLTAIYADNNSLKKL 210
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 172 QISKLNANTFRNLNVF-RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFR 229
QI +++ F + +LY+ FN I + F + L L LE N L+++ + F
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFH 138
Query: 230 XXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
+E I+++TF+ +L+++ LS N+LT + D L H N+ YN
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNL 197
Query: 290 LNELILESSIVE 301
L+ L + ++ E
Sbjct: 198 LSTLAIPIAVEE 209
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 211 LEFLDLENNRLTNI-NQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLT 269
L +DL NNR++ + NQ F + I TF+ L +L+ +SL GN ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 270 RIPDFIHN--KRLSHLNLGYNFL 290
+P+ N LSHL +G N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 166 LILSYNQISKLNANTFRNLNVFRLY-LKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
LILSYN++ + TF L RL L N IS + + AFN L S L L + N L
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL-SALSHLAIGANPL 138
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRXXXXXXXXXXXXXXIEF 246
+LY+ FN I + F + L L LE N L+++ + F +E
Sbjct: 103 KLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVE 301
I+++TF+ +L+++ LS N+LT + D L H N+ YN L+ L + ++ E
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIAVEE 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
L L N + L F L ++ +LYL NK+ + + FN L S L +L+L N+L ++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTYLNLSTNQLQSL 91
Query: 225 -NQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHL 283
N F ++ + + F+ L LK + L N+L +PD + + RL+ L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD-RLTSL 150
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 27/119 (22%)
Query: 171 NQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
N I + A+TFR+L+ L L N I +I AFNGL ++L L+L +N LT
Sbjct: 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-ASLNTLELFDNWLT------- 136
Query: 230 XXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLG 286
I + FE+L L+ + L N + IP + N+ L L+LG
Sbjct: 137 ----------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 40/160 (25%)
Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN--- 219
+ + L N+IS + A +FR N+ L+L N ++ I AF GL + LE LDL +N
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQL 92
Query: 220 ------------RL--TNINQC---------FRXXXXXXXXXXXXXXIEFIQNNTFEHLV 256
RL ++++C FR ++ + ++TF L
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 257 NLKSISLSGNKLTRIPD------------FIHNKRLSHLN 284
NL + L GN+++ +P+ +H R++H++
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 173 ISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRX 230
+ +L FR L + LYL+ N + + D F L + L L L NR++++ + FR
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRG 174
Query: 231 XXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
+ + + F L L ++ L N L+ +P
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 40/160 (25%)
Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN--- 219
+ + L N+IS + A +FR N+ L+L N ++ I AF GL + LE LDL +N
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQL 93
Query: 220 ------------RL--TNINQC---------FRXXXXXXXXXXXXXXIEFIQNNTFEHLV 256
RL ++++C FR ++ + ++TF L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 257 NLKSISLSGNKLTRIPD------------FIHNKRLSHLN 284
NL + L GN+++ +P+ +H R++H++
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 173 ISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRX 230
+ +L FR L + LYL+ N + + D F L + L L L NR++++ + FR
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRG 175
Query: 231 XXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
+ + + F L L ++ L N L+ +P
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 168 LSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L N I + +TF++L L L N + +I AFNGL S L L+L +NRLT +
Sbjct: 42 LQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS-LNTLELFDNRLTTVPT 100
Query: 226 QCF-------------------------RXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKS 260
Q F R +E+I FE LVNL+
Sbjct: 101 QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY 160
Query: 261 ISLSGNKLTRIPDFIHNKRLSHLNLGYNFLN 291
++L L IP+ RL L L N L+
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLD 191
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 168 LSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L N I + +TF++L L L N + +I AFNGL S L L+L +NRLT +
Sbjct: 42 LQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS-LNTLELFDNRLTTVPT 100
Query: 226 QCF-------------------------RXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKS 260
Q F R +E+I FE LVNL+
Sbjct: 101 QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY 160
Query: 261 ISLSGNKLTRIPDFIHNKRLSHLNLGYNFLN 291
++L L IP+ RL L L N L+
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLD 191
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 49 PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
PE+ L L + N + + L + ++N D+N L L LP ++E LSV NN L
Sbjct: 116 PELPASLKHLDVDNNQLTXLPELPAL--LEYINADNNQLTXLPELPTSLEVLSVRNNQLT 173
Query: 109 NYLELNRMTSLKWIVLSNNYIKEF-VIPNRKH 139
EL SL+ + +S N ++ +P R H
Sbjct: 174 FLPELPE--SLEALDVSTNLLESLPAVPVRNH 203
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 51 IQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNY 110
+ ++T L I +N + + L S+ +L+ N L TL LP +++ L V NN L
Sbjct: 78 LPPQITVLEITQNALISLPELPA--SLEYLDACDNRLSTLPELPASLKHLDVDNNQLTXL 135
Query: 111 LELNRMTSLKWIVLSNNYI 129
EL + L++I NN +
Sbjct: 136 PELPAL--LEYINADNNQL 152
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
LIL+ NQ+ L F L N+ L L N++ + D F+ L + L +L+L +N+L ++
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSL 148
Query: 225 NQ-CFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHL 283
+ F ++ + F+ L LK + L N+L +PD + + RL+ L
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD-RLTSL 207
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFLNEL 293
++ + N F+ L NLK + L N+L +PD + +K L++LNL +N L L
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYLVNYLE 112
L +G N +H I L ++ +L + N LQ+L D L ++ L + N L + +
Sbjct: 68 LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPD 126
Query: 113 --LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXXXXXXXXXXXXXYYIKDLILSY 170
+++T+L ++ L++N ++ + +KL + +L LSY
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSL---PKGVFDKLTN-----------------LTELDLSY 166
Query: 171 NQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
NQ+ L F L + L L N++ + D F+ L S L+++ L +N
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDN 215
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 73 GFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYLVNYLEL---NRMTSLKWIVL 124
G + WLN+D N LQTL D L + + TL +ANN L + L L + +T L + L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTE-LGTLGLANNQLAS-LPLGVFDHLTQLDKLYL 114
Query: 125 SNNYIKEFVIPNRKHIEKLDXXXXXXXXXXXXXXXXYYIKDLILSYNQISKLNANTFRNL 184
N +K + KL K+L L+ NQ+ + A F L
Sbjct: 115 GGNQLKSLPSGVFDRLTKL--------------------KELRLNTNQLQSIPAGAFDKL 154
Query: 185 -NVFRLYLKFNKISEIHDFAFNGLN 208
N+ L L N++ + AF+ L
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLG 179
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 168 LSYNQISKLNANTFRNLN-VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L YNQ+ L+A F +L + L L N+++ + F+ L + L+ L L N+L ++ +
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKSLPS 124
Query: 226 QCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNL 285
F ++ I F+ L NL+++SLS N+L +P + RL L
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD-RLGKLQT 183
Query: 286 GYNFLNELILESSIVENEIIDQNMLFNSNAVME 318
F N+ + S E + Q + NSN V +
Sbjct: 184 ITLFGNQ--FDCSRCETLYLSQWIRENSNKVKD 214
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 162 YIKDLILSYNQISKLNA-NTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
Y +L L+ N+ + L A F+ L R + NKI++I + AF G + E L L +N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL-LTSN 91
Query: 220 RLTNI-NQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIP----DF 274
RL N+ ++ F+ I + N++F L +++ +SL N++T + D
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 275 IHNKRLSHLNLGYNFLN 291
+H+ LS LNL N N
Sbjct: 152 LHS--LSTLNLLANPFN 166
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 163 IKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
++ L LS+ + LN+ F L + L L +NKI++I D AF GL++ L+ L+L N L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYNLL 326
Query: 222 TNINQC-FRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKS-------------------I 261
+ F I IQ+ TF+ L L++ I
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI 386
Query: 262 SLSGNKLTRIPDFIHNKRLSHLN 284
LSGNKL +P L HL+
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLS 409
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEI 304
+ + FE L +LK ++L+ NK+ +I D F L LNL YN L EL + ++
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340
Query: 305 IDQNMLFNSNAVMEDQ 320
++ N A+++DQ
Sbjct: 341 AYIDLQKNHIAIIQDQ 356
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 73 GFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYLVNYLEL---NRMTSLKWIVL 124
G + WLN+D N LQTL D L + + TL +ANN L + L L + +T L + L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTE-LGTLGLANNQLAS-LPLGVFDHLTQLDKLYL 114
Query: 125 SNNYIKEFVIPNRKHIEKLDXXXXXXXXXXXXXXXXYYIKDLILSYNQISKLNANTFRNL 184
N +K + KL K+L L+ NQ+ + A F L
Sbjct: 115 GGNQLKSLPSGVFDRLTKL--------------------KELRLNTNQLQSIPAGAFDKL 154
Query: 185 -NVFRLYLKFNKISEIHDFAFNGLN 208
N+ L L N++ + AF+ L
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLG 179
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 168 LSYNQISKLNANTFRNLN-VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L YNQ+ L+A F +L + L L N+++ + F+ L + L+ L L N+L ++ +
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKSLPS 124
Query: 226 QCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
F ++ I F+ L NL+++SLS N+L +P
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRXXXXXXXXXXXXXXIEF 246
+L L+ ++ + D F GL + L +L+L+ N+L ++ F +
Sbjct: 39 KLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFLNEL 293
+ F+HL L + L GN+L +P + ++ +L L L N L +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 38/166 (22%)
Query: 69 ENLNGFRSILW----LNMDSNLLQTL---DSLPKT-METLSVANNYLVNYLELNRMTSLK 120
+ L R W L++ N L + D P T +E L++++N L L+L +++L+
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83
Query: 121 WIVLSNNYIKEFVI-PNRKHIEKLDXXXXXXXXXXXXXXXXYYIKDLILSYNQISKLNAN 179
+ L+NNY++E ++ P+ I+ L + N IS+++ +
Sbjct: 84 TLDLNNNYVQELLVGPS--------------------------IETLHAANNNISRVSCS 117
Query: 180 TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
R +YL NKI+ + D G S +++LDL+ N + +N
Sbjct: 118 --RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVN 160
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 32/139 (23%)
Query: 164 KDLILSYNQISKLNANTF---RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN- 219
+ + L N+IS + A +F RNL + L+L N ++ I AF GL + LE LDL +N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTI--LWLHSNALAGIDAAAFTGL-TLLEQLDLSDNA 90
Query: 220 --RLTN--------------INQC---------FRXXXXXXXXXXXXXXIEFIQNNTFEH 254
R+ + +++C FR ++ + +NTF
Sbjct: 91 QLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRD 150
Query: 255 LVNLKSISLSGNKLTRIPD 273
L NL + L GN++ +P+
Sbjct: 151 LGNLTHLFLHGNRIPSVPE 169
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKT-----------METLSVA 103
LT L N+I ++ L+ ++ +L DSN L LD P T + L V+
Sbjct: 66 LTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS 124
Query: 104 NNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXXXXXXXXXXXXXYYI 163
N L+ YL R T + V N + E K I KLD +
Sbjct: 125 QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ------------L 172
Query: 164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN 223
L S+N+I++L+ + + LN RL N I+++ N N L FLD +N+LT
Sbjct: 173 TTLDCSFNKITELDVSQNKLLN--RLNCDTNNITKLD---LNQ-NIQLTFLDCSSNKLTE 226
Query: 224 IN 225
I+
Sbjct: 227 ID 228
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 162 YIKDLILSYNQISKLNA--NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
Y L LS+N +S+L A R N+ L L N ++ I AF + L +LDL +N
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDLSSN 98
Query: 220 RLTNINQ-CFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
L +++ F I + N FE + L+ + LS N+++R P
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 45 ANWSPEIQNKLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLD----SLPKTME 98
A W+P L +L + NH++ I E ++ +L++ SN L TLD S + +E
Sbjct: 56 AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115
Query: 99 TLSVANNYLV----NYLELNRMTSLKWIVLSNNYIKEFVI 134
L + NN++V N E M L+ + LS N I F +
Sbjct: 116 VLLLYNNHIVVVDRNAFE--DMAQLQKLYLSQNQISRFPV 153
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 164 KDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
K L LS N IS+L L+ R L L N+I + DF N LE+LD+ +NRL
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ 113
Query: 223 NINQC 227
NI+ C
Sbjct: 114 NISCC 118
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 63/207 (30%)
Query: 10 VSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE 69
V GIQY P ++ +S +NQI ++ + P + T LF+ N + I+
Sbjct: 59 VQGIQYLPNLTSLNLS----------NNQITDISPIQYLPNV----TKLFLNGNKLTDIK 104
Query: 70 NLNGFRSILWLNMDSNLLQT-------------------------LDSLPKTMETLSVAN 104
L +++ WL +D N ++ L LP+ +E+L + N
Sbjct: 105 PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ-LESLYLGN 163
Query: 105 NYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXXXXXXXXXXXXXYYIK 164
N + + L+R+T L + L +N I + V ++
Sbjct: 164 NKITDITVLSRLTKLDTLSLEDNQISDIV----------------------PLAGLTKLQ 201
Query: 165 DLILSYNQISKLNA-NTFRNLNVFRLY 190
+L LS N IS L A +NL+V L+
Sbjct: 202 NLYLSKNHISDLRALAGLKNLDVLELF 228
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 163 IKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
+K LS ++I L + F + ++ +L L N+I++I D AF GL L+ L+L N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK-LNLSQNFL 335
Query: 222 TNIN-QCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRL 280
+I+ + F I + + +F L NLK ++L N+L +PD I ++
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395
Query: 281 S 281
S
Sbjct: 396 S 396
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 38/166 (22%)
Query: 69 ENLNGFRSILW----LNMDSNLLQTL---DSLPKT-METLSVANNYLVNYLELNRMTSLK 120
+ L R W L++ N L + D P T +E L++++N L L+L +++L+
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83
Query: 121 WIVLSNNYIKEFVI-PNRKHIEKLDXXXXXXXXXXXXXXXXYYIKDLILSYNQISKLNAN 179
+ L+NNY++E ++ P+ I+ L + N IS+++ +
Sbjct: 84 TLDLNNNYVQELLVGPS--------------------------IETLHAANNNISRVSCS 117
Query: 180 TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
R +YL NKI+ + D G S +++LDL+ N + +N
Sbjct: 118 --RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVN 160
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 168 LSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L NQI + N+F++L L L N I I AFNGL + L L+L +NRLT I N
Sbjct: 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRLTTIPN 129
Query: 226 QCF-------------------------RXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKS 260
F R + +I FE L NL+
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189
Query: 261 ISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
++L+ L IP+ +L L+L N L+ +
Sbjct: 190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 25/91 (27%)
Query: 205 NGLNSTLEFLDLENNRLTNINQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLS 264
+GL ++ LDL NNR+T +I N+ + VNL+++ L+
Sbjct: 48 SGLTEAVKSLDLSNNRIT-----------------------YISNSDLQRCVNLQALVLT 84
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
N + I + F L HL+L YN+L+ L
Sbjct: 85 SNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 25/91 (27%)
Query: 205 NGLNSTLEFLDLENNRLTNINQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLS 264
+GL ++ LDL NNR+T +I N+ + VNL+++ L+
Sbjct: 22 SGLTEAVKSLDLSNNRIT-----------------------YISNSDLQRCVNLQALVLT 58
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
N + I + F L HL+L YN+L+ L
Sbjct: 59 SNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFLNEL 293
I ++ F+HLVNL+ + + NKLT IP + +K +L+ L+L N L +
Sbjct: 45 ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNLLQT---LDSLPKTMETLSVANNYLVNYLELN 114
L + N+I +I +L+G ++ L++ NL++ LD++ T+E L ++ N + + +
Sbjct: 54 LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 113
Query: 115 RMTSLKWIVLSNNYI 129
++ +L+ + +SNN I
Sbjct: 114 KLVNLRVLYMSNNKI 128
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNLLQT---LDSLPKTMETLSVANNYLVNYLELN 114
L + N+I +I +L+G ++ L++ NL++ LD++ T+E L ++ N + + +
Sbjct: 53 LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 112
Query: 115 RMTSLKWIVLSNNYI 129
++ +L+ + +SNN I
Sbjct: 113 KLVNLRVLYMSNNKI 127
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
L L N IS+L + F+ L +++ L L NKIS+IH+ AF+ L L+ L + N L I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK-LQKLYISKNHLVEI 117
Query: 225 NQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKL 268
I + F L N+ I + GN L
Sbjct: 118 PP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLELNR 115
L + N I I L+G S+ LN SN + L L T+E L +++N + + L +
Sbjct: 134 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193
Query: 116 MTSLKWIVLSNNYIKEFV 133
+T+L+ ++ +NN I +
Sbjct: 194 LTNLESLIATNNQISDIT 211
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFLNEL 293
IE + ++ F+ L NL+SI NKL ++P I K +L LNL N L +
Sbjct: 158 IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSV 209
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLELNR 115
L + N I I L+G S+ L+ SN + L L T+E L +++N + + L +
Sbjct: 134 LELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193
Query: 116 MTSLKWIVLSNNYIKEFV 133
+T+L+ ++ +NN I +
Sbjct: 194 LTNLESLIATNNQISDIT 211
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLELNR 115
L + N I I L+G S+ L+ SN + L L T+E L +++N + + L +
Sbjct: 134 LELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193
Query: 116 MTSLKWIVLSNNYIKEFV 133
+T+L+ ++ +NN I +
Sbjct: 194 LTNLESLIATNNQISDIT 211
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 25/112 (22%)
Query: 163 IKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
+ +L L NQ+ L F +L L L +N++ + F+ L S L+ L L NN+L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS-LKELRLYNNQL 169
Query: 222 TNINQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
+ + F+ L LK++ L N+L R+P+
Sbjct: 170 KRVPE-----------------------GAFDKLTELKTLKLDNNQLKRVPE 198
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 26/119 (21%)
Query: 166 LILSYNQISKLNANTFRNLN-VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
L L N++ L F L + +L L N+I + D F+ L + L L L N+L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL-TKLTILYLHENKL--- 88
Query: 225 NQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHL 283
+ + N F+ L LK ++L N+L +PD I + RL+ L
Sbjct: 89 --------------------QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD-RLTSL 126
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 162 YIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
Y++ L LSYN IS + + L + + L +++ + +AF GLN L L++ N+
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQ 307
Query: 221 LTNINQ 226
LT + +
Sbjct: 308 LTTLEE 313
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 162 YIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
++++L L+ N +S + F NL N+ L L+ N++ I F GL S L LD+ N+
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL-SNLTKLDISENK 115
Query: 221 LTNI-NQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKR 279
+ + + F+ + +I + F L +L+ ++L LT IP +
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP----TEA 171
Query: 280 LSHLN 284
LSHL+
Sbjct: 172 LSHLH 176
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 206 GLNSTLEFLDLENNRLTNINQC-FRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLS 264
G+ + LDL NR+ +NQ F + ++ F +L NL+++ L
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 265 GNKLTRIP 272
N+L IP
Sbjct: 89 SNRLKLIP 96
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 49/162 (30%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 68 VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 127
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXX 149
L LP+ +E+L + NN + + L+R+T L + L +N I+ V R + KL
Sbjct: 128 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLAR--LTKL------ 178
Query: 150 XXXXXXXXXXXYYIKDLILSYNQISKLNA-NTFRNLNVFRLY 190
++L LS N IS L A +NL+V L+
Sbjct: 179 --------------QNLYLSKNHISDLRALRGLKNLDVLELF 206
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 166 LILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-- 223
L LS QI ++AN F+ + RLYL N ++E+ N S L LDL +NRLT+
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKN--LSNLRVLDLSHNRLTSLP 286
Query: 224 --INQCFR 229
+ CF+
Sbjct: 287 AELGSCFQ 294
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 49/162 (30%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 88 VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 147
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXX 149
L LP+ +E+L + NN + + L+R+T L + L +N I + V
Sbjct: 148 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---------------- 190
Query: 150 XXXXXXXXXXXYYIKDLILSYNQISKLNA-NTFRNLNVFRLY 190
+++L LS N IS L A +NL+V L+
Sbjct: 191 ------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 49/162 (30%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 88 VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 147
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXX 149
L LP+ +E+L + NN + + L+R+T L + L +N I + V
Sbjct: 148 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---------------- 190
Query: 150 XXXXXXXXXXXYYIKDLILSYNQISKLNA-NTFRNLNVFRLY 190
+++L LS N IS L A +NL+V L+
Sbjct: 191 ------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 49/162 (30%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 88 VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 147
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXX 149
L LP+ +E+L + NN + + L+R+T L + L +N I + V
Sbjct: 148 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---------------- 190
Query: 150 XXXXXXXXXXXYYIKDLILSYNQISKLNA-NTFRNLNVFRLY 190
+++L LS N IS L A +NL+V L+
Sbjct: 191 ------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 49/162 (30%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 65 VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 124
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXX 149
L LP+ +E+L + NN + + L+R+T L + L +N I + V
Sbjct: 125 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---------------- 167
Query: 150 XXXXXXXXXXXYYIKDLILSYNQISKLNA-NTFRNLNVFRLY 190
+++L LS N IS L A +NL+V L+
Sbjct: 168 ------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 203
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFLNELILESSIVE 301
I ++ F+ L+NLK + L N+L +P + + +L+ L+LG N L +L S++ +
Sbjct: 52 ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT--VLPSAVFD 109
Query: 302 NEIIDQNMLFNSNAVME 318
+ + + N + E
Sbjct: 110 RLVHLKELFMCCNKLTE 126
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 49/162 (30%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 70 VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXX 149
L LP+ +E+L + NN + + L+R+T L + L +N I + V
Sbjct: 130 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---------------- 172
Query: 150 XXXXXXXXXXXYYIKDLILSYNQISKLNA-NTFRNLNVFRLY 190
+++L LS N IS L A +NL+V L+
Sbjct: 173 ------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 49/162 (30%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 68 VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 127
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXX 149
L LP+ +E+L + NN + + L+R+T L + L +N I + V
Sbjct: 128 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---------------- 170
Query: 150 XXXXXXXXXXXYYIKDLILSYNQISKLNA-NTFRNLNVFRLY 190
+++L LS N IS L A +NL+V L+
Sbjct: 171 ------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 206
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 35/147 (23%)
Query: 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC 227
L+YNQI+++ AN F G +E L +N+L I
Sbjct: 360 LAYNQITEIPAN------------------------FCGFTEQVENLSFAHNKLKYIPNI 395
Query: 228 F--RXXXXXXXXXXXXXXIEFIQNNTFEHL-------VNLKSISLSGNKLTRIPD--FIH 276
F + I + F+ L +N+ SI+LS N++++ P F
Sbjct: 396 FDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455
Query: 277 NKRLSHLNLGYNFLNELILESSIVENE 303
LS +NL N L E+ S ENE
Sbjct: 456 GSPLSSINLXGNXLTEIPKNSLKDENE 482
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 26/104 (25%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 65 VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 124
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV 133
L LP+ +E+L + NN + + L+R+T L + L +N I + V
Sbjct: 125 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 167
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 163 IKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
I L L++NQ+ +L A F R + L + FN IS++ L L+ L+L++N L
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNEL 90
Query: 222 TNI-NQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLT 269
+ + ++ F I+ I+NN F NL ++ LS N L+
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 168 LSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L++NQ+ +L A F R + L + FN IS++ L L+ L+L++N L+ + +
Sbjct: 42 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSD 100
Query: 226 QCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLT 269
+ F I+ I+NN F NL ++ LS N L+
Sbjct: 101 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 168 LSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L++NQ+ +L A F R + L + FN IS++ L L+ L+L++N L+ + +
Sbjct: 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSD 90
Query: 226 QCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLT 269
+ F I+ I+NN F NL ++ LS N L+
Sbjct: 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 163 IKDLILSYNQI-SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
++ L L N+I KL+ +R L N+F +YL +NK ++ +F L +L+ L L
Sbjct: 407 LRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF-ALVPSLQRLMLRRVA 465
Query: 221 LTNIN---QCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRI-----P 272
L N++ FR I I + E L NL+ + N L R+ P
Sbjct: 466 LKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANP 525
Query: 273 DFIHN--KRLSH---LNLGYNFLNEL 293
N K LSH LNL N L+E+
Sbjct: 526 GGPVNFLKGLSHLHILNLESNGLDEI 551
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 34/112 (30%)
Query: 163 IKDLILSYNQISKLNANTF---RNLNVFRLYLKFNKIS-------EIHDFAFNGLNSTLE 212
++ L L YN I +L+ +F NL L F K S I DF+F L LE
Sbjct: 274 LRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWL-KYLE 332
Query: 213 FLDLENNRLTNINQCFRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLS 264
+L++++N I ++NTF LV+LK +SLS
Sbjct: 333 YLNMDDNN-----------------------IPSTKSNTFTGLVSLKYLSLS 361
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 163 IKDLILSYNQISKLNANTFRNLN-VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
I ++ L N I + F + R+ L N+ISE+ AF GL S L L L N++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYGNKI 92
Query: 222 TNINQC-FRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
T + + F I ++ + F+ L NL +SL NKL I
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHL 283
I +N F L +LK ++L N+L +PD I + RL+ L
Sbjct: 314 IDDNAFWGLTHLKELALDTNQLKSVPDGIFD-RLTSL 349
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 207 LNSTLEFLDLENNRLTNINQC-FRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSG 265
L LDL+NN++T I F+ I I F LV L+ + LS
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 266 NKLTRIPD 273
N+L +P+
Sbjct: 110 NQLKELPE 117
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 163 IKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
I ++ L N I + F R + L N+ISE+ AF GL S L L L N++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYGNKI 92
Query: 222 TNINQC-FRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
T + + F I ++ + F+ L NL +SL NKL I
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTI 143
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNL--LQTLDSLPKTMETLSVANNYLVNYLELNR 115
L + N I I L+G S+ LN + + L+ L +L T+E L +++N + + L +
Sbjct: 134 LELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL-TTLERLDISSNKVSDISVLAK 192
Query: 116 MTSLKWIVLSNNYIKEFV 133
+T+L+ ++ +NN I +
Sbjct: 193 LTNLESLIATNNQISDIT 210
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNL--LQTLDSLPKTMETLSVANNYLVNYLELNR 115
L + N I I L+G S+ LN + + L+ L +L T+E L +++N + + L +
Sbjct: 134 LELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL-TTLERLDISSNKVSDISVLAK 192
Query: 116 MTSLKWIVLSNNYIKEFV 133
+T+L+ ++ +NN I +
Sbjct: 193 LTNLESLIATNNQISDIT 210
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 49/162 (30%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT------------------------- 89
+T LF+ N + I+ L +++ WL +D N ++
Sbjct: 70 VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDXXXXX 149
L LP+ +E+L + NN + + L+R+T L + L +N I + V + KL
Sbjct: 130 LVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKL------ 180
Query: 150 XXXXXXXXXXXYYIKDLILSYNQISKLNA-NTFRNLNVFRLY 190
++L LS N IS L A +NL+V L+
Sbjct: 181 --------------QNLYLSKNHISDLRALAGLKNLDVLELF 208
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 207 LNSTLEFLDLENNRLTNINQC-FRXXXXXXXXXXXXXXIEFIQNNTFEHLVNLKSISLSG 265
L LDL+NN++T I F+ I I F LV L+ + LS
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 266 NKLTRIPD 273
N+L +P+
Sbjct: 110 NQLKELPE 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,145,089
Number of Sequences: 62578
Number of extensions: 291011
Number of successful extensions: 1075
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 228
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)