Query psy11652
Match_columns 325
No_of_seqs 178 out of 3330
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 15:29:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 100.0 2E-31 4.4E-36 233.3 7.4 295 24-319 48-358 (873)
2 KOG4194|consensus 100.0 1.2E-31 2.7E-36 234.6 3.0 286 25-314 100-428 (873)
3 PLN00113 leucine-rich repeat r 100.0 9.3E-28 2E-32 238.7 20.3 295 17-314 56-368 (968)
4 PLN00113 leucine-rich repeat r 99.9 6.1E-27 1.3E-31 232.9 19.3 269 24-295 90-373 (968)
5 KOG0444|consensus 99.9 5.4E-26 1.2E-30 201.2 -2.4 270 25-300 101-384 (1255)
6 KOG0444|consensus 99.9 4.7E-26 1E-30 201.7 -4.4 144 25-171 30-183 (1255)
7 KOG0472|consensus 99.9 1.1E-24 2.4E-29 183.5 -3.0 266 25-296 112-545 (565)
8 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.6E-26 184.3 15.7 246 27-295 201-462 (788)
9 PRK15387 E3 ubiquitin-protein 99.9 1.5E-21 3.2E-26 183.7 13.7 217 28-270 223-459 (788)
10 KOG0472|consensus 99.8 1.7E-24 3.6E-29 182.4 -10.8 263 28-298 46-317 (565)
11 PRK15370 E3 ubiquitin-protein 99.8 1.7E-20 3.8E-25 177.3 13.7 244 27-292 178-429 (754)
12 KOG4237|consensus 99.8 8.6E-23 1.9E-27 171.7 -2.9 290 15-314 34-358 (498)
13 KOG0618|consensus 99.8 4.5E-22 9.7E-27 183.2 -1.1 238 75-314 219-488 (1081)
14 KOG0618|consensus 99.8 5.6E-21 1.2E-25 176.1 -1.1 263 27-296 219-494 (1081)
15 KOG4237|consensus 99.8 2.5E-21 5.4E-26 163.0 -3.4 261 28-291 68-359 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 4.4E-19 9.6E-24 167.8 10.9 243 53-314 178-427 (754)
17 PLN03210 Resistant to P. syrin 99.8 1.8E-17 3.8E-22 166.5 19.6 254 28-295 590-887 (1153)
18 PLN03210 Resistant to P. syrin 99.8 5.1E-17 1.1E-21 163.2 21.2 266 21-297 552-865 (1153)
19 KOG0617|consensus 99.7 7E-20 1.5E-24 137.8 -6.7 165 131-298 25-193 (264)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.6E-16 3.5E-21 138.9 6.0 218 53-294 23-294 (319)
21 cd00116 LRR_RI Leucine-rich re 99.6 7.9E-16 1.7E-20 134.5 8.7 221 23-245 19-291 (319)
22 KOG0617|consensus 99.6 6.1E-18 1.3E-22 127.4 -5.2 178 111-290 27-211 (264)
23 KOG1259|consensus 99.4 1.3E-13 2.7E-18 113.3 1.1 199 94-297 213-418 (490)
24 KOG3207|consensus 99.3 1.7E-13 3.6E-18 117.6 -0.2 151 71-222 117-284 (505)
25 KOG1259|consensus 99.3 9E-13 2E-17 108.3 2.0 124 117-244 284-411 (490)
26 PF14580 LRR_9: Leucine-rich r 99.3 1.9E-12 4.2E-17 101.1 3.6 116 54-169 20-148 (175)
27 KOG3207|consensus 99.3 5.7E-13 1.2E-17 114.4 0.1 172 24-196 118-313 (505)
28 PF14580 LRR_9: Leucine-rich r 99.3 4.2E-12 9E-17 99.3 4.7 119 25-146 17-148 (175)
29 COG4886 Leucine-rich repeat (L 99.3 9.3E-12 2E-16 112.1 7.3 195 99-296 97-295 (394)
30 KOG1909|consensus 99.2 8.1E-13 1.8E-17 110.5 -1.2 130 160-290 156-310 (382)
31 KOG1909|consensus 99.2 1.5E-11 3.2E-16 103.0 4.7 220 94-314 29-310 (382)
32 COG4886 Leucine-rich repeat (L 99.2 3.8E-11 8.1E-16 108.2 6.2 188 57-247 97-292 (394)
33 KOG0532|consensus 99.1 1.8E-12 3.9E-17 114.8 -5.2 174 94-272 74-250 (722)
34 KOG0531|consensus 99.0 2.2E-11 4.7E-16 110.1 -1.1 238 53-296 72-323 (414)
35 KOG0532|consensus 99.0 8.2E-12 1.8E-16 110.8 -3.7 188 58-248 55-250 (722)
36 KOG0531|consensus 98.9 8.8E-11 1.9E-15 106.2 -1.5 237 25-269 70-318 (414)
37 PF13855 LRR_8: Leucine rich r 98.9 2.5E-09 5.4E-14 68.9 5.3 59 27-87 1-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.2E-14 70.0 3.5 58 233-290 2-61 (61)
39 KOG1859|consensus 98.7 9.9E-10 2.1E-14 100.5 -3.7 131 184-318 164-295 (1096)
40 KOG4658|consensus 98.6 2.8E-08 6E-13 96.6 5.2 100 25-126 543-651 (889)
41 KOG2982|consensus 98.6 2.1E-08 4.5E-13 82.8 2.8 196 94-292 70-291 (418)
42 KOG1859|consensus 98.6 3.5E-10 7.6E-15 103.3 -9.1 126 162-293 165-294 (1096)
43 KOG4658|consensus 98.6 4.3E-08 9.4E-13 95.3 4.3 78 25-105 569-652 (889)
44 PLN03150 hypothetical protein; 98.6 2.6E-07 5.5E-12 87.7 9.4 103 186-289 420-526 (623)
45 COG5238 RNA1 Ran GTPase-activa 98.6 5E-09 1.1E-13 85.3 -2.1 184 111-295 86-320 (388)
46 KOG2982|consensus 98.6 2.1E-08 4.6E-13 82.8 1.3 77 52-128 70-157 (418)
47 KOG2120|consensus 98.5 5.1E-09 1.1E-13 86.4 -3.7 75 55-129 187-272 (419)
48 PLN03150 hypothetical protein; 98.5 3.9E-07 8.4E-12 86.5 7.5 103 211-313 420-526 (623)
49 KOG1644|consensus 98.4 4.1E-07 9E-12 71.1 5.8 120 29-151 21-153 (233)
50 COG5238 RNA1 Ran GTPase-activa 98.4 3.5E-07 7.5E-12 74.8 5.5 201 94-295 29-289 (388)
51 KOG4579|consensus 98.4 9.4E-09 2E-13 75.2 -3.6 109 163-273 29-140 (177)
52 KOG3665|consensus 98.4 1.4E-07 2.9E-12 89.6 2.6 144 25-170 120-284 (699)
53 KOG2120|consensus 98.3 3.4E-08 7.3E-13 81.6 -2.4 169 119-287 187-372 (419)
54 PF12799 LRR_4: Leucine Rich r 98.3 6E-07 1.3E-11 53.1 3.2 40 256-295 1-41 (44)
55 KOG4341|consensus 98.2 3.5E-08 7.6E-13 85.0 -4.6 236 53-288 138-436 (483)
56 PRK15386 type III secretion pr 98.2 8.2E-06 1.8E-10 72.0 9.1 132 25-172 50-188 (426)
57 KOG1644|consensus 98.2 2.4E-06 5.2E-11 67.0 4.9 101 94-194 41-150 (233)
58 KOG4579|consensus 98.2 2.2E-07 4.9E-12 68.1 -0.9 115 184-300 27-145 (177)
59 PRK15386 type III secretion pr 98.0 7E-05 1.5E-09 66.3 10.7 135 113-266 48-187 (426)
60 PF12799 LRR_4: Leucine Rich r 98.0 1.4E-05 3.1E-10 47.2 4.2 38 210-247 2-39 (44)
61 KOG4341|consensus 98.0 2.5E-07 5.4E-12 79.9 -4.8 262 23-286 160-460 (483)
62 PF13306 LRR_5: Leucine rich r 97.9 3.3E-05 7.1E-10 57.8 6.9 16 155-170 29-44 (129)
63 PF13306 LRR_5: Leucine rich r 97.8 0.00012 2.5E-09 54.7 8.4 119 155-280 6-128 (129)
64 KOG3665|consensus 97.7 1.8E-05 4E-10 75.4 2.9 108 22-130 143-263 (699)
65 KOG2123|consensus 97.6 3.2E-06 6.9E-11 69.6 -3.9 77 25-105 17-98 (388)
66 KOG2123|consensus 97.6 2.7E-06 5.9E-11 70.0 -4.4 92 53-144 19-123 (388)
67 KOG2739|consensus 97.4 9.3E-05 2E-09 60.6 2.3 95 53-147 43-152 (260)
68 KOG2739|consensus 97.3 9.6E-05 2.1E-09 60.5 1.4 79 74-152 42-130 (260)
69 KOG1947|consensus 96.4 0.00085 1.8E-08 62.0 0.4 31 258-288 403-437 (482)
70 KOG1947|consensus 96.2 0.00096 2.1E-08 61.7 -0.8 116 53-168 188-328 (482)
71 PF13504 LRR_7: Leucine rich r 95.5 0.0095 2.1E-07 27.1 1.3 16 279-294 2-17 (17)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.018 3.8E-07 28.2 1.8 17 28-44 1-17 (22)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.016 3.4E-07 28.4 1.2 20 54-73 1-21 (22)
74 smart00369 LRR_TYP Leucine-ric 93.9 0.049 1.1E-06 27.7 1.8 21 278-298 2-22 (26)
75 smart00370 LRR Leucine-rich re 93.9 0.049 1.1E-06 27.7 1.8 21 278-298 2-22 (26)
76 KOG3864|consensus 93.3 0.019 4.2E-07 45.5 -0.5 73 54-126 102-185 (221)
77 KOG4308|consensus 93.0 0.0018 3.9E-08 59.4 -7.6 38 232-269 262-303 (478)
78 KOG4308|consensus 93.0 0.0012 2.5E-08 60.6 -8.9 188 55-243 89-329 (478)
79 KOG3864|consensus 91.4 0.075 1.6E-06 42.3 0.7 81 184-265 101-185 (221)
80 PF13516 LRR_6: Leucine Rich r 86.1 0.37 7.9E-06 23.9 0.8 17 277-293 1-17 (24)
81 smart00364 LRR_BAC Leucine-ric 85.6 0.6 1.3E-05 23.8 1.4 18 278-295 2-19 (26)
82 smart00365 LRR_SD22 Leucine-ri 78.8 2.1 4.5E-05 21.9 1.9 17 278-294 2-18 (26)
83 KOG0473|consensus 76.0 0.081 1.8E-06 43.1 -5.7 77 73-149 40-122 (326)
84 smart00368 LRR_RI Leucine rich 73.7 3.2 6.8E-05 21.5 1.8 15 278-292 2-16 (28)
85 KOG0473|consensus 70.2 0.11 2.5E-06 42.3 -6.1 85 182-269 40-124 (326)
86 KOG3763|consensus 68.8 3.3 7.1E-05 38.4 1.9 12 94-105 243-254 (585)
87 KOG3763|consensus 57.6 5.9 0.00013 36.8 1.5 64 229-292 215-284 (585)
88 smart00367 LRR_CC Leucine-rich 56.0 8.1 0.00017 19.4 1.3 12 74-85 1-12 (26)
89 TIGR00864 PCC polycystin catio 42.3 17 0.00037 40.7 2.2 32 238-269 1-32 (2740)
90 KOG4242|consensus 37.1 1.3E+02 0.0029 27.8 6.5 98 28-129 166-280 (553)
91 PF05725 FNIP: FNIP Repeat; I 32.4 81 0.0018 18.1 3.2 9 94-102 33-41 (44)
No 1
>KOG4194|consensus
Probab=99.97 E-value=2e-31 Score=233.29 Aligned_cols=295 Identities=23% Similarity=0.359 Sum_probs=245.9
Q ss_pred hccc-ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCcccccc---cCCc
Q psy11652 24 ISCI-LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTLDSL---PKTM 97 (325)
Q Consensus 24 ~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l---~~~L 97 (325)
..|+ .-+.||+++..+..+.-..+.+-+++..+.|++++|++..+. .|.++++|+.+++..|.++.++.| ..+|
T Consensus 48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl 127 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHL 127 (873)
T ss_pred CcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccce
Confidence 3455 556788999988877654553445567888999999999877 788999999999999999888666 5669
Q ss_pred cEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCC
Q psy11652 98 ETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN 171 (325)
Q Consensus 98 ~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 171 (325)
++|++.+|.++.+ ..+..++.|+.|+|+.|.++.++ +..-.++++|++++|.|+.+ ...|.++.+|..|.++.|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 9999999998888 78889999999999999999877 44456899999999999988 778888889999999999
Q ss_pred cCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccccccc
Q psy11652 172 QISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQN 249 (325)
Q Consensus 172 ~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~ 249 (325)
+++.+|...|+ +++|+.|++..|.+.-+.-..|.+++ +++.+.+..|++..+.. .|..+.++++|++..|++..+..
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 99999988888 59999999999988877667888888 89999999988887765 77888889999999888888877
Q ss_pred chhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeecc
Q psy11652 250 NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMED 319 (325)
Q Consensus 250 ~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (325)
..+-++++|+.|++++|.|..+.. ++.+++|++|++++|.|+.++++.+....++..+++.-|.+.++.+
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 777788888888888888886654 8888888888888888888888888777777788888887766543
No 2
>KOG4194|consensus
Probab=99.97 E-value=1.2e-31 Score=234.60 Aligned_cols=286 Identities=24% Similarity=0.307 Sum_probs=126.3
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCcc
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTME 98 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~ 98 (325)
++++|+++++..|.++.+|. | +...-+|+.|+|.+|.|.++. .+.-++.|+++|++.|.+..+ ..| -.+++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~--f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPR--F-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred cCCcceeeeeccchhhhccc--c-cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 55555555555555555555 2 222234555555555444443 333344444444444444443 333 23344
Q ss_pred EEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCC------------------------c
Q psy11652 99 TLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNN------------------------L 149 (325)
Q Consensus 99 ~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~------------------------~ 149 (325)
+|++++|.++.+ ..|..+.+|.+|.|+.|.++.+| +..+++|+.|++..| +
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 444444444433 33333334444444444443333 222333333333333 3
Q ss_pred cccc-hhhccCCCCccEEEccCCcCccccc-CccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-
Q psy11652 150 ISTI-NLNLNNTYYIKDLILSYNQISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ- 226 (325)
Q Consensus 150 ~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~- 226 (325)
+..+ ...|..+.++++|++..|++..+.. ++++++.|+.|+++.|.|..+.+..+...+ +|++|+++.|.++.+++
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEG 335 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChh
Confidence 3222 2233444444444444444443222 223335555555555555554444444444 55555555555554443
Q ss_pred hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC----CCCCCCCCEEECCCCcCcccccccccch
Q psy11652 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD----FIHNKRLSHLNLGYNFLNELILESSIVE 301 (325)
Q Consensus 227 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~----~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 301 (325)
.|..+..|++|++++|.+..+....|.++++|+.|||+.|.++ .+.+ |..+++|+.|++.||+++.|+...+...
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl 415 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL 415 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC
Confidence 4444444455555555444444444444444555555544444 2211 4444445555555555555444444333
Q ss_pred hhhcccccccccc
Q psy11652 302 NEIIDQNMLFNSN 314 (325)
Q Consensus 302 ~~~~~~~~~~~~~ 314 (325)
..+-.+|+..|-|
T Consensus 416 ~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 416 EALEHLDLGDNAI 428 (873)
T ss_pred cccceecCCCCcc
Confidence 3344444444444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=9.3e-28 Score=238.73 Aligned_cols=295 Identities=22% Similarity=0.237 Sum_probs=206.5
Q ss_pred ccchhhhhccc---ccceEEcCCCceeeecCCCcCcccccCccEEECCCCccc-ccc--cccCCCCccEEEccCCCCccc
Q psy11652 17 PCSENVQISCI---LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIH-QIE--NLNGFRSILWLNMDSNLLQTL 90 (325)
Q Consensus 17 ~~~~~~~~~~~---~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~ 90 (325)
.|+.|.++.|. .++.|+++++.++......| ..+ ++|+.|++++|.+. .+| .+.++++|++|++++|.+...
T Consensus 56 ~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~-~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~ 133 (968)
T PLN00113 56 DVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI-FRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133 (968)
T ss_pred CCCcCcceecCCCCcEEEEEecCCCccccCChHH-hCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc
Confidence 46678888885 68999999998885555467 666 89999999999887 566 455889999999999887654
Q ss_pred -c-cccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEEccCCccccc-hhhccCCCC
Q psy11652 91 -D-SLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYY 162 (325)
Q Consensus 91 -~-~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 162 (325)
+ ..+++|++|++++|.+... ..+..+++|++|++++|.+. .+| +..+++|++|++++|.+... |..++++++
T Consensus 134 ~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 134 IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred cCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 2 2378888888888877654 56778888888888888775 455 55777888888888877655 777777788
Q ss_pred ccEEEccCCcCc-ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCC
Q psy11652 163 IKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLH 240 (325)
Q Consensus 163 L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~ 240 (325)
|+.|++.+|.+. .++..+...++|+.|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 888888777766 3444455557777777777777666666677776 7777777777665 455566667777777777
Q ss_pred CCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccc
Q psy11652 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314 (325)
Q Consensus 241 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~ 314 (325)
+|.+.+..+..+..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+++..+........+..+++..|.+
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 77666555555666666777777666665 3344 66666666666666666644443333333444445545444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=6.1e-27 Score=232.90 Aligned_cols=269 Identities=22% Similarity=0.267 Sum_probs=164.1
Q ss_pred hcccccceEEcCCCcee-eecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc--ccc--cCCcc
Q psy11652 24 ISCILLMSAENEDNQIA-ELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL--DSL--PKTME 98 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~ 98 (325)
..+++|++|++++|.+. .+|...+ ..+ ++|++|++++|.+.+......+++|++|++++|.+... ..+ +++|+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~-~~l-~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIF-TTS-SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHh-ccC-CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 36778888888888776 5666333 344 77777777777665422234466677777777766543 334 66777
Q ss_pred EEEeecCcccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCc
Q psy11652 99 TLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQ 172 (325)
Q Consensus 99 ~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 172 (325)
.|++++|.+... ..+.++++|++|++++|.+. .+| +..+.+|+.|++++|.+... |..++++++|+.|++.+|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 777776665543 45666667777777666665 334 45566666666666666544 5666666666666666666
Q ss_pred Ccc-cccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccc
Q psy11652 173 ISK-LNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNN 250 (325)
Q Consensus 173 l~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 250 (325)
+.. ++..+...++|+.|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+.
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 552 333444446666666666666555555555555 6666666666554 4555556666666666666666555555
Q ss_pred hhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652 251 TFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 251 ~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
.+..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+++..+
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 5555666666666666665 3444 5555666666666665554333
No 5
>KOG0444|consensus
Probab=99.90 E-value=5.4e-26 Score=201.25 Aligned_cols=270 Identities=25% Similarity=0.275 Sum_probs=206.2
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-ccc--cCCccE
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-DSL--PKTMET 99 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~ 99 (325)
.+..|+.||++.|+++..|. .+ ... +++-.|+|++|.|.++| .|-++.-|-.||++.|++..+ +.+ +..|++
T Consensus 101 ~l~dLt~lDLShNqL~EvP~-~L-E~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPT-NL-EYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred ccccceeeecchhhhhhcch-hh-hhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 56677788888888888777 55 444 77888888888888887 566777788888888877777 444 777888
Q ss_pred EEeecCcccch--hhhccCCCCCEEEccCCcce--eec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcC
Q psy11652 100 LSVANNYLVNY--LELNRMTSLKWIVLSNNYIK--EFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173 (325)
Q Consensus 100 L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~--~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 173 (325)
|.+++|++... ..+..+++|++|.+++.+-+ .+| ...+.+|+.++++.|.+..+|.++.++++|+.|++++|++
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 88888877666 56666777777888777554 666 5577888888888888888888888888888888888888
Q ss_pred cccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc--CchHhhhCCCCCCEEeCCCCcccccccch
Q psy11652 174 SKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT--NINQCFRNLKKLKYLYLHNNNIEFIQNNT 251 (325)
Q Consensus 174 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 251 (325)
+.+........++++|+++.|.++.++ .++..++ .|+.|.+.+|+++ .+|..++++.+|..+...+|.+.-+| ..
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt~LP-~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP-Eg 334 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLTVLP-DAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP-EG 334 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhccch-HHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc-hh
Confidence 877665555578888888888887764 5777787 8888888888776 78888888888888888887765444 46
Q ss_pred hccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccc
Q psy11652 252 FEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIV 300 (325)
Q Consensus 252 l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~ 300 (325)
++.|.+|+.|.|+.|.+..+|+ +--++.|+.|+++.|+=--.||...-.
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence 7888888888888888888887 666788888888888755556555433
No 6
>KOG0444|consensus
Probab=99.90 E-value=4.7e-26 Score=201.65 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=65.5
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc---c-cc-cCCcc
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL---D-SL-PKTME 98 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~---~-~l-~~~L~ 98 (325)
.++.++-|.+..+.+..+|. .+ +.+ ++|++|.+.+|.+.++- .++.++.|+.+.+..|++... . -| +..|+
T Consensus 30 qMt~~~WLkLnrt~L~~vPe-EL-~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPE-EL-SRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HhhheeEEEechhhhhhChH-HH-HHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence 34455555555555555555 44 444 45555555555444443 444455555555554444332 1 22 44455
Q ss_pred EEEeecCcccch-hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccchhhccCCCCccEEEccCC
Q psy11652 99 TLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171 (325)
Q Consensus 99 ~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (325)
.|++++|.+... ..+..-+++-.|++++|++..+| +.++.-|-+|++++|.+..+|.-+..+..|++|.+++|
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 555555544444 34444444444444444444444 33333444444444444444333333333334444333
No 7
>KOG0472|consensus
Probab=99.88 E-value=1.1e-24 Score=183.47 Aligned_cols=266 Identities=25% Similarity=0.322 Sum_probs=173.9
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-cc-c-cCCccEE
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DS-L-PKTMETL 100 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~-l-~~~L~~L 100 (325)
+...+..++++.+.+..++. .+ +++ -.|+.++-.+|.+.+.| ++.++.++..+++.+|.+... +. + ++.|+++
T Consensus 112 s~~~l~~l~~s~n~~~el~~-~i-~~~-~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELPD-SI-GRL-LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhhhhccccceeecCc-hH-HHH-hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 44556666666666666666 44 444 45666666666666666 566666666666666666555 22 2 5666666
Q ss_pred EeecCcccch-hhhccCCCCCEEEccCCcceeec-C------------------------CCCCCccEEEccCCccccch
Q psy11652 101 SVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV-I------------------------PNRKHIEKLDLSNNLISTIN 154 (325)
Q Consensus 101 ~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~-~------------------------~~~~~L~~L~l~~~~~~~~~ 154 (325)
+...|.++.+ +.++.+.+|.-|++..|++..+| + ..++++..||+.+|+++++|
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence 6666655555 55555555555555555555444 2 25667777777777877777
Q ss_pred hhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCccc-----------------------------------
Q psy11652 155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI----------------------------------- 199 (325)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~----------------------------------- 199 (325)
..+.-+.+|+.|++++|.++.++....+. +|+.|.+.||.+..+
T Consensus 269 de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 77777777788888888777777776666 677776666654321
Q ss_pred -------------------------------------------------------------------------------C
Q psy11652 200 -------------------------------------------------------------------------------H 200 (325)
Q Consensus 200 -------------------------------------------------------------------------------~ 200 (325)
.
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 1
Q ss_pred hhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccc-----------------------cccchhccCcc
Q psy11652 201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEF-----------------------IQNNTFEHLVN 257 (325)
Q Consensus 201 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~-----------------------~~~~~l~~~~~ 257 (325)
+..++.++ ++..|++++|-+.++|..++.+..|+.++++.|+|.. +++..+.++.+
T Consensus 428 ~~~l~~l~-kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 428 PLELSQLQ-KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred hHHHHhhh-cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 12223333 7777788888777888777777778888888776542 33434666777
Q ss_pred CCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccc
Q psy11652 258 LKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILE 296 (325)
Q Consensus 258 L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~ 296 (325)
|..||+.+|.+..+|+ ++++.+|++|.++||+|+ .|+.
T Consensus 507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred cceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 7888888888888887 788888888888888887 5544
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.2e-21 Score=184.25 Aligned_cols=246 Identities=23% Similarity=0.243 Sum_probs=148.6
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCc
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~ 106 (325)
.+-..|+++++.++.+|. .+ .++|+.|.+.+|.++.+|.+ .++|++|++++|.++.++.++++|+.|++.+|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~-~l----~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPD-CL----PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCcCCc-ch----hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCcccccceeeccCCc
Confidence 466788999988888887 44 25788888888888887732 578888888888888775567788888888887
Q ss_pred ccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccc
Q psy11652 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNV 186 (325)
Q Consensus 107 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 186 (325)
+..+.. ...+|+.|++++|.++.+|. .+++|+.|++++|.++.+|... .+|+.|++.+|.++.++.. ..+|
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~L 344 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGL 344 (788)
T ss_pred hhhhhh--chhhcCEEECcCCccccccc-cccccceeECCCCccccCCCCc---ccccccccccCcccccccc---cccc
Confidence 766532 12456677777777776662 2456777777777766653321 2344455555555444321 1345
Q ss_pred cEEEcccCCCcccChhh---------------hhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccch
Q psy11652 187 FRLYLKFNKISEIHDFA---------------FNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNT 251 (325)
Q Consensus 187 ~~L~l~~~~l~~~~~~~---------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 251 (325)
+.|++++|.++.++... +...+++|+.|++++|.+..+|.. .++|+.|++++|.++.++..
T Consensus 345 q~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l- 420 (788)
T PRK15387 345 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML- 420 (788)
T ss_pred ceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc-
Confidence 55555555554432100 001112455555555555554432 24556666666665554431
Q ss_pred hccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652 252 FEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 252 l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
..+|+.|++++|.++.+|. +..+++|+.|++++|++++..+
T Consensus 421 ---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 421 ---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 1345566666666666665 6666666666666666665443
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.5e-21 Score=183.65 Aligned_cols=217 Identities=22% Similarity=0.254 Sum_probs=146.8
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCcc
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYL 107 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~l 107 (325)
+|+.|++.+|.++.+|. .+++|++|++++|.++.+|.+ .++|+.|++++|.+..++.++.+|+.|++++|.+
T Consensus 223 ~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 294 (788)
T ss_pred CCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCcc
Confidence 67888888888887776 136788888888877777622 2456666666665554433344555555555544
Q ss_pred cchhhhccCCCCCEEEccCCcce--------------------eecCCCCCCccEEEccCCccccchhhccCCCCccEEE
Q psy11652 108 VNYLELNRMTSLKWIVLSNNYIK--------------------EFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI 167 (325)
Q Consensus 108 ~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 167 (325)
..++. ..++|+.|++++|.++ .+|. ...+|+.|++++|.++.+|.. ..+|+.|+
T Consensus 295 t~LP~--~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~ 368 (788)
T PRK15387 295 TSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT-LPSGLQELSVSDNQLASLPTL---PSELYKLW 368 (788)
T ss_pred ccccc--cccccceeECCCCccccCCCCcccccccccccCccccccc-cccccceEecCCCccCCCCCC---Ccccceeh
Confidence 44321 1234555555555444 4441 124677777777777766432 24566677
Q ss_pred ccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccc
Q psy11652 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFI 247 (325)
Q Consensus 168 l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~ 247 (325)
+.+|.+..++.. ..+|+.|++++|.++.++.. . ++|+.|++++|.+..+|.. ..+|+.|++++|.++.+
T Consensus 369 Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l----~-s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~L 437 (788)
T PRK15387 369 AYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL----P-SELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRL 437 (788)
T ss_pred hhccccccCccc---ccccceEEecCCcccCCCCc----c-cCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccccc
Confidence 777777665542 25789999999998876531 2 3899999999999988753 34688899999999987
Q ss_pred ccchhccCccCCEEEccCCCCcc
Q psy11652 248 QNNTFEHLVNLKSISLSGNKLTR 270 (325)
Q Consensus 248 ~~~~l~~~~~L~~L~l~~n~l~~ 270 (325)
|. .+..+++|+.|++++|.++.
T Consensus 438 P~-sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 438 PE-SLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred Ch-HHhhccCCCeEECCCCCCCc
Confidence 65 67889999999999999983
No 10
>KOG0472|consensus
Probab=99.85 E-value=1.7e-24 Score=182.42 Aligned_cols=263 Identities=23% Similarity=0.267 Sum_probs=231.1
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCccEEEee
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTMETLSVA 103 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~ 103 (325)
.++.+.++.|.++.+.. .+ .++ +.|..|.+.++.+...| +++.+..++.++.+.|++..+ +.+ ...+.+++.+
T Consensus 46 ~l~~lils~N~l~~l~~-dl-~nL-~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE-DL-KNL-ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhccH-hh-hcc-cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 47788899999887766 45 555 88999999999999988 888899999999999998888 555 8899999999
Q ss_pred cCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652 104 NNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT 180 (325)
Q Consensus 104 ~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 180 (325)
+|.+... +.++.+-.++.++..+|+++.+| ..++.++..+++.+|.++..|...-.+..|++++...|.++.+|+.+
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l 202 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL 202 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence 9998888 88999999999999999999888 77889999999999999998444444999999999999999999999
Q ss_pred cCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhh-hCCCCCCEEeCCCCcccccccchhccCccCC
Q psy11652 181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF-RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259 (325)
Q Consensus 181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 259 (325)
..+.+|..|++..|++..++ .|.++. .|+++.++.|.+.-+|... ..++++..|+++.|++.+.|. .+.-+.+|+
T Consensus 203 g~l~~L~~LyL~~Nki~~lP--ef~gcs-~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-e~clLrsL~ 278 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLP--EFPGCS-LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-EICLLRSLE 278 (565)
T ss_pred cchhhhHHHHhhhcccccCC--CCCccH-HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-HHHHhhhhh
Confidence 98899999999999998886 688887 9999999999999888754 488999999999999999877 566688999
Q ss_pred EEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccc
Q psy11652 260 SISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESS 298 (325)
Q Consensus 260 ~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~ 298 (325)
+||+++|.++++|. ++++ .|+.|-+-||+++++..+..
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 99999999999998 8888 89999999999999887753
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.7e-20 Score=177.28 Aligned_cols=244 Identities=20% Similarity=0.260 Sum_probs=200.3
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccccCCccEEEeec
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVAN 104 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~ 104 (325)
.+...|++++..++.+|. .+ +++|+.|++++|.++.+| .+. .+|++|++++|.+..+ ..++++|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~-~I----p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA-CI----PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCc-cc----ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcC
Confidence 467899999999999987 34 478999999999999998 443 5899999999999888 55678999999999
Q ss_pred Ccccch-hhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCC
Q psy11652 105 NYLVNY-LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN 183 (325)
Q Consensus 105 ~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 183 (325)
|.+..+ ..+ ..+|+.|++++|.+..+|.....+|+.|++++|.++.+|..+. ++|+.|++.+|.++.++... .
T Consensus 251 N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~ 324 (754)
T PRK15370 251 NRITELPERL--PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL--P 324 (754)
T ss_pred CccCcCChhH--hCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc--c
Confidence 998877 333 2589999999999998883334689999999999998865442 47899999999998876543 2
Q ss_pred ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEc
Q psy11652 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263 (325)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 263 (325)
++|+.|++++|.++.++. .+ +++|+.|++++|.+..+|..+. ++|+.|++++|.++.+++. +. ..|+.|++
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~-~l---~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdL 395 (754)
T PRK15370 325 PGLKTLEAGENALTSLPA-SL---PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPEN-LP--AALQIMQA 395 (754)
T ss_pred ccceeccccCCccccCCh-hh---cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHh-HH--HHHHHHhh
Confidence 789999999999988753 22 3499999999999998887553 6899999999999988764 33 36899999
Q ss_pred cCCCCcccCC-----CCCCCCCCEEECCCCcCcc
Q psy11652 264 SGNKLTRIPD-----FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 264 ~~n~l~~l~~-----~~~~~~L~~L~l~~n~i~~ 292 (325)
++|++..+|. ....+++..+++.+|+++.
T Consensus 396 s~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 396 SRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred ccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 9999998876 3445888999999999873
No 12
>KOG4237|consensus
Probab=99.84 E-value=8.6e-23 Score=171.73 Aligned_cols=290 Identities=21% Similarity=0.273 Sum_probs=178.1
Q ss_pred ccccchhhhhccccc--ceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc
Q psy11652 15 YGPCSENVQISCILL--MSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL 90 (325)
Q Consensus 15 ~~~~~~~~~~~~~~L--~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~ 90 (325)
..+|| +++.|+.. -..++++..++.+|. .+ ++.-..++|..|.|+.+| +|+.+++|+.||++.|.|..+
T Consensus 34 ~~~CP--~pC~Cs~~~g~~VdCr~~GL~eVP~-~L----P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I 106 (498)
T KOG4237|consen 34 ASACP--APCTCSDVEGGIVDCRGKGLTEVPA-NL----PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI 106 (498)
T ss_pred cccCC--CCcccCCCCCceEEccCCCcccCcc-cC----CCcceEEEeccCCcccCChhhccchhhhceecccccchhhc
Confidence 34555 44566653 355778888888888 45 577888899999999998 899999999999999998888
Q ss_pred --ccc--cCCccEEEee-cCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccC
Q psy11652 91 --DSL--PKTMETLSVA-NNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNN 159 (325)
Q Consensus 91 --~~l--~~~L~~L~l~-~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~ 159 (325)
++| ++.+.+|-+. +|.++.+ ..|.++..++.|.+.-|++.-+. +..++++..|.+.+|.+..+ ...|..
T Consensus 107 ~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~ 186 (498)
T KOG4237|consen 107 APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQG 186 (498)
T ss_pred ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccc
Confidence 667 5666555554 4788888 78888888888888888877555 56788888888888888877 457888
Q ss_pred CCCccEEEccCCcCc---ccc---------cCccCC-ccccEEEcccCCCcccChhhhhCccccCCEE--Ec-cCC-CCc
Q psy11652 160 TYYIKDLILSYNQIS---KLN---------ANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFL--DL-ENN-RLT 222 (325)
Q Consensus 160 ~~~L~~L~l~~~~l~---~~~---------~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L--~l-~~~-~l~ 222 (325)
+..++.+++..|..- .++ +..++. ..+....+...++..+....|... ++.+ .+ +.+ -..
T Consensus 187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~ 263 (498)
T KOG4237|consen 187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDS 263 (498)
T ss_pred hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCC
Confidence 888888887766511 111 111111 222222233333333322222211 1111 01 111 112
Q ss_pred CchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccccccc
Q psy11652 223 NINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSI 299 (325)
Q Consensus 223 ~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~ 299 (325)
..|. .|.++++|+.+++++|+++++.+..|.+...++.|.|..|++..+.. |.++.+|+.|++.+|+|+.+.+..+.
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 3332 45556666666666666666555556666666666666666654443 55555666666666666666665555
Q ss_pred chhhhcccccccccc
Q psy11652 300 VENEIIDQNMLFNSN 314 (325)
Q Consensus 300 ~~~~~~~~~~~~~~~ 314 (325)
....+..+++..|.+
T Consensus 344 ~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPF 358 (498)
T ss_pred ccceeeeeehccCcc
Confidence 555555555555544
No 13
>KOG0618|consensus
Probab=99.83 E-value=4.5e-22 Score=183.24 Aligned_cols=238 Identities=23% Similarity=0.278 Sum_probs=175.3
Q ss_pred CCccEEEccCCCCccc-ccc-cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCc
Q psy11652 75 RSILWLNMDSNLLQTL-DSL-PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNL 149 (325)
Q Consensus 75 ~~L~~L~l~~~~~~~~-~~l-~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~ 149 (325)
++++.|+.+.|.+... ..+ +.+|+.++++++.++.+ ..+..+++|+.+....|.++.+| +....+|++|.+..|.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 4555666666665544 334 88888888888888888 77788888888888888888777 5566677777777777
Q ss_pred cccchhhccCCCCccEEEccCCcCcccccCccCC--------------------------ccccEEEcccCCCcccChhh
Q psy11652 150 ISTINLNLNNTYYIKDLILSYNQISKLNANTFRN--------------------------LNVFRLYLKFNKISEIHDFA 203 (325)
Q Consensus 150 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--------------------------~~L~~L~l~~~~l~~~~~~~ 203 (325)
+..+|.......+|++|++..|.+..++...+.. +.|+.|++.+|.+++..-..
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 7777666666777777777777766555433221 33555666666666655556
Q ss_pred hhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCE
Q psy11652 204 FNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSH 282 (325)
Q Consensus 204 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~ 282 (325)
+.+++ .|+.|++++|.+..+|. .+.+++.|+.|+++||+++.++. .+..+..|+.|...+|++..+|.+..+++|+.
T Consensus 379 l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 379 LVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLGRLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred hcccc-ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence 66777 88888888888887776 66778888888888888887764 66777888888888888888888888888888
Q ss_pred EECCCCcCcccccccccchhhhcccccccccc
Q psy11652 283 LNLGYNFLNELILESSIVENEIIDQNMLFNSN 314 (325)
Q Consensus 283 L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~ 314 (325)
+|++.|+++.+......+..++.++|++.|..
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 88888888887777666667777888887764
No 14
>KOG0618|consensus
Probab=99.79 E-value=5.6e-21 Score=176.08 Aligned_cols=263 Identities=23% Similarity=0.284 Sum_probs=208.4
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCccEEEe
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTMETLSV 102 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l 102 (325)
+.++.|+.+.|.++.+.. .-.+.+|++++++.+.+..+| .++.|.+|..+....|.+..+ .++ ..+|+.|.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV----HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeecc----ccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHh
Confidence 355555556666654444 223468999999999999998 788899999999999988776 444 888999999
Q ss_pred ecCcccch-hhhccCCCCCEEEccCCcceeec---CCCC-CCccEEEccCCccccch-hhccCCCCccEEEccCCcCccc
Q psy11652 103 ANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNR-KHIEKLDLSNNLISTIN-LNLNNTYYIKDLILSYNQISKL 176 (325)
Q Consensus 103 ~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~ 176 (325)
.+|.+..+ +...+.+.|++|++..|.+..+| +... ..+..+..+.+.+...| ..=..++.|+.|++.+|.+++-
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 99988888 66667999999999999999888 2222 34677777777777663 1123356799999999999854
Q ss_pred ccCcc-CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccC
Q psy11652 177 NANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255 (325)
Q Consensus 177 ~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 255 (325)
-...+ ..++|+.|++++|++..++...+..+. .|++|++++|+++.+|..+..++.|++|...+|++..+| .+..+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l 451 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQL 451 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchH-HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhc
Confidence 33344 449999999999999999999999998 999999999999999999999999999999999999887 57788
Q ss_pred ccCCEEEccCCCCc--ccCCCCCCCCCCEEECCCCcCcccccc
Q psy11652 256 VNLKSISLSGNKLT--RIPDFIHNKRLSHLNLGYNFLNELILE 296 (325)
Q Consensus 256 ~~L~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~i~~~~~~ 296 (325)
+.|+.+|++.|.++ .+|.-..-++|+.|+++||.-...+-+
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~ 494 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHK 494 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchh
Confidence 99999999999998 444422228999999999986444433
No 15
>KOG4237|consensus
Probab=99.79 E-value=2.5e-21 Score=163.03 Aligned_cols=261 Identities=25% Similarity=0.335 Sum_probs=192.9
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccC-CCCccc--ccc--cCCccEE
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDS-NLLQTL--DSL--PKTMETL 100 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~-~~~~~~--~~l--~~~L~~L 100 (325)
.-..++|..|.|+.+|..+| +.+ ++|+.|+|++|.|+.+. +|.+++++.+|-+.+ |+|+++ ..| +.+++.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF-~~l-~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAF-KTL-HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhc-cch-hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 56789999999999999999 888 99999999999999886 999999988877766 899999 667 8999999
Q ss_pred EeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-------------hhhccCCCC
Q psy11652 101 SVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-------------NLNLNNTYY 162 (325)
Q Consensus 101 ~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-------------~~~~~~~~~ 162 (325)
.+.-|.+..+ ..+..++++..|.+.+|.+..++ +..+..++.+.+..|.+... +..+++..-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 9999988888 89999999999999999988777 55677777777766552111 222333333
Q ss_pred ccEEEccCCcCcccccCccCCc--cccEEEcccC-CCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEe
Q psy11652 163 IKDLILSYNQISKLNANTFRNL--NVFRLYLKFN-KISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLY 238 (325)
Q Consensus 163 L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~ 238 (325)
.....+.+.++.++.+.-+... .+..-..+.+ .....+...|..++ +|+.+++++|+++.+.+ +|.+..+++.|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 3333333333433333322221 2221112222 33344556788887 88888888888886665 788888888888
Q ss_pred CCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCc
Q psy11652 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLN 291 (325)
Q Consensus 239 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~ 291 (325)
+..|++..+...+|.++..|+.|+|++|+|+.+.+ |....+|.+|++-.|++.
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 88888887777788888888888888888886655 777888888888887764
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.4e-19 Score=167.81 Aligned_cols=243 Identities=23% Similarity=0.255 Sum_probs=184.0
Q ss_pred cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccccCCccEEEeecCcccch-hhhccCCCCCEEEccCCcc
Q psy11652 53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYI 129 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~ 129 (325)
.+...|+++++.++.+| .+. +.++.|++++|.+..+ ..++++|+.|++++|.++.+ ..+ .++|+.|++++|.+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L 253 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRI 253 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh--hccccEEECcCCcc
Confidence 56788999988888888 343 5789999999988877 44577899999999988777 322 25799999999999
Q ss_pred eeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccc
Q psy11652 130 KEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS 209 (325)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 209 (325)
..+|.....+|+.|++++|.++.+|..+. ++|+.|++++|.++.++..+. ++|+.|++++|.++.++.. .++
T Consensus 254 ~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~----l~~ 325 (754)
T PRK15370 254 TELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET----LPP 325 (754)
T ss_pred CcCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc----ccc
Confidence 88883334689999999999887765543 579999999998887765432 5788899999988876532 223
Q ss_pred cCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCC
Q psy11652 210 TLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYN 288 (325)
Q Consensus 210 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n 288 (325)
+|+.|++++|.++.+|..+. ++|+.|++++|.++.++. .+. ++|+.|++++|.++.+|+ +. .+|+.|++++|
T Consensus 326 sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~-~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 326 GLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred cceeccccCCccccCChhhc--CcccEEECCCCCCCcCCh-hhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC
Confidence 89999999999888887553 689999999999887654 332 689999999999998887 43 46889999999
Q ss_pred cCcccccccccch---hhhcccccccccc
Q psy11652 289 FLNELILESSIVE---NEIIDQNMLFNSN 314 (325)
Q Consensus 289 ~i~~~~~~~~~~~---~~~~~~~~~~~~~ 314 (325)
.++.+|....... .....+++..|.+
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 9998876543211 2234456666665
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1.8e-17 Score=166.48 Aligned_cols=254 Identities=19% Similarity=0.209 Sum_probs=139.8
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCC-Ccccccc--cCCccEEEee
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNL-LQTLDSL--PKTMETLSVA 103 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~l--~~~L~~L~l~ 103 (325)
+|+.|.+.++.++.+|. .| .+.+|+.|++.++.+..++ .+..+++|+.++++++. +..++.+ +++|+.|+++
T Consensus 590 ~Lr~L~~~~~~l~~lP~-~f---~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPS-NF---RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCCCCCC-cC---CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence 57777777777777776 44 2367777777777777666 56667777777777653 3333444 6777777777
Q ss_pred cCc-ccch-hhhccCCCCCEEEccCC-cceeec-CCCCCCccEEEccCCcccc-chhhccCCCCccEEEccCCcCccccc
Q psy11652 104 NNY-LVNY-LELNRMTSLKWIVLSNN-YIKEFV-IPNRKHIEKLDLSNNLIST-INLNLNNTYYIKDLILSYNQISKLNA 178 (325)
Q Consensus 104 ~~~-l~~~-~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~ 178 (325)
+|. +..+ ..+..+++|+.|++++| .+..+| ...+.+|+.|++++|.... .|.. ..+|+.|++.++.+..+|.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccc
Confidence 653 3333 55667777777777765 345566 3356667777776664322 2321 2345556666555554443
Q ss_pred CccCC-------------------------------ccccEEEcccCCCcccChhhhhCccccCCEEEccCC-CCcCchH
Q psy11652 179 NTFRN-------------------------------LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN-RLTNINQ 226 (325)
Q Consensus 179 ~~~~~-------------------------------~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~ 226 (325)
.. .. ++|+.|++++|......|..+..++ +|+.|++++| .+..+|.
T Consensus 743 ~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 743 NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPT 820 (1153)
T ss_pred cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCC
Confidence 21 11 3455555555533322333455555 5566655554 3444443
Q ss_pred hhhCCCCCCEEeCCCCccc-ccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCC-CcCccccc
Q psy11652 227 CFRNLKKLKYLYLHNNNIE-FIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGY-NFLNELIL 295 (325)
Q Consensus 227 ~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~-n~i~~~~~ 295 (325)
.+ .+++|+.|++++|... .++. ..++|+.|++++|.+..+|. +..+++|+.|++++ +.++.++.
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CC-CccccCEEECCCCCccccccc----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 32 3445555555544221 1111 11345556666666665555 55556666666655 34554444
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=5.1e-17 Score=163.20 Aligned_cols=266 Identities=22% Similarity=0.244 Sum_probs=198.0
Q ss_pred hhhhcccccceEEcCCCce------e-eecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-c
Q psy11652 21 NVQISCILLMSAENEDNQI------A-ELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-D 91 (325)
Q Consensus 21 ~~~~~~~~L~~L~l~~~~i------~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~ 91 (325)
.+...|++|+.|.+..+.. . .+|. .| ..+++.|+.|.+.++.+..+| .| ...+|+.|++.++.+..+ .
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~-~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GF-DYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCc-ch-hhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc
Confidence 4466899999999965432 2 4555 56 556578999999999999999 44 678999999999998887 5
Q ss_pred cc--cCCccEEEeecCc-ccchhhhccCCCCCEEEccCCc-ceeec--CCCCCCccEEEccCCc-cccchhhccCCCCcc
Q psy11652 92 SL--PKTMETLSVANNY-LVNYLELNRMTSLKWIVLSNNY-IKEFV--IPNRKHIEKLDLSNNL-ISTINLNLNNTYYIK 164 (325)
Q Consensus 92 ~l--~~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~ 164 (325)
++ +++|+.|+++++. +..++.+..+++|++|++++|. +..+| +..+.+|+.|++++|. ++.+|..+ ++++|+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 55 8999999999864 5555778889999999999875 55777 6788999999999875 55556554 789999
Q ss_pred EEEccCCc-CcccccCccCCccccEEEcccCCCcccChhh----------------------------hhCccccCCEEE
Q psy11652 165 DLILSYNQ-ISKLNANTFRNLNVFRLYLKFNKISEIHDFA----------------------------FNGLNSTLEFLD 215 (325)
Q Consensus 165 ~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~----------------------------~~~~~~~L~~L~ 215 (325)
.|++.+|. +..++. ...+|+.|+++++.+..++... ....+++|+.|+
T Consensus 708 ~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 708 RLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred EEeCCCCCCcccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 99999984 334432 1368999999999877654310 001123777888
Q ss_pred ccCCC-CcCchHhhhCCCCCCEEeCCCCc-ccccccchhccCccCCEEEccCCC-CcccCCCCCCCCCCEEECCCCcCcc
Q psy11652 216 LENNR-LTNINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNK-LTRIPDFIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 216 l~~~~-l~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~l~~~~~~~~L~~L~l~~n~i~~ 292 (325)
+++|. +..+|..++.+++|+.|++.+|. +..++.. + .+++|+.|++++|. +..+|.. .++|+.|++++|.++.
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEE 860 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCcc
Confidence 88774 44778888888889999988874 4445442 2 57888899988864 4456552 3578899999999988
Q ss_pred ccccc
Q psy11652 293 LILES 297 (325)
Q Consensus 293 ~~~~~ 297 (325)
+|...
T Consensus 861 iP~si 865 (1153)
T PLN03210 861 VPWWI 865 (1153)
T ss_pred ChHHH
Confidence 87653
No 19
>KOG0617|consensus
Probab=99.70 E-value=7e-20 Score=137.81 Aligned_cols=165 Identities=28% Similarity=0.368 Sum_probs=123.2
Q ss_pred eec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccc
Q psy11652 131 EFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS 209 (325)
Q Consensus 131 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 209 (325)
.++ ...+.+++.|.+++|.++.+|..+..+.+|+.|++++|+++.+|..+.++++|+.|.++.|++... |..|+.+|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p- 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFP- 102 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCc-
Confidence 344 446667777777777777776667777777777777777777777777777777777777766544 45677777
Q ss_pred cCCEEEccCCCCc--CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECC
Q psy11652 210 TLEFLDLENNRLT--NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLG 286 (325)
Q Consensus 210 ~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~ 286 (325)
.|+.||+++|.+. .+|..|..++.|+.|+++.|++.-+++ .++.+++|+.|.+..|.+.++|. ++.+..|++|+++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 7888888887776 667777777778888888887766555 56778888888888888888887 7778888888888
Q ss_pred CCcCcccccccc
Q psy11652 287 YNFLNELILESS 298 (325)
Q Consensus 287 ~n~i~~~~~~~~ 298 (325)
+|+++-+|++..
T Consensus 182 gnrl~vlppel~ 193 (264)
T KOG0617|consen 182 GNRLTVLPPELA 193 (264)
T ss_pred cceeeecChhhh
Confidence 888888888753
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=1.6e-16 Score=138.91 Aligned_cols=218 Identities=25% Similarity=0.253 Sum_probs=101.4
Q ss_pred cCccEEECCCCccccc-----c-cccCCCCccEEEccCCCCccc--------ccc--cCCccEEEeecCcccch--hhhc
Q psy11652 53 NKLTTLFIGENHIHQI-----E-NLNGFRSILWLNMDSNLLQTL--------DSL--PKTMETLSVANNYLVNY--LELN 114 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~--------~~l--~~~L~~L~l~~~~l~~~--~~~~ 114 (325)
..|++|+++++.++.. + .+...+++++++++++.+... ..+ .++|+.|++++|.+... ..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 5677777777776432 2 445566677777776655421 112 45666666666555422 2222
Q ss_pred cC---CCCCEEEccCCcceeec-------CCCC-CCccEEEccCCccccc-----hhhccCCCCccEEEccCCcCccccc
Q psy11652 115 RM---TSLKWIVLSNNYIKEFV-------IPNR-KHIEKLDLSNNLISTI-----NLNLNNTYYIKDLILSYNQISKLNA 178 (325)
Q Consensus 115 ~~---~~L~~L~l~~~~~~~~~-------~~~~-~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~ 178 (325)
.+ ++|++|++++|.+.... ...+ ++|+.|++++|.++.. ...+..+++|+.|++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l---------- 172 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL---------- 172 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC----------
Confidence 22 33555555555544100 1122 4455555555544411 223334444444444
Q ss_pred CccCCccccEEEcccCCCcccC----hhhhhCccccCCEEEccCCCCc-----CchHhhhCCCCCCEEeCCCCccccccc
Q psy11652 179 NTFRNLNVFRLYLKFNKISEIH----DFAFNGLNSTLEFLDLENNRLT-----NINQCFRNLKKLKYLYLHNNNIEFIQN 249 (325)
Q Consensus 179 ~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~ 249 (325)
++|.+++.. ...+...+ +|+.|++++|.+. .++..+..+++|++|++++|.++....
T Consensus 173 -------------~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 173 -------------ANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred -------------cCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 444443211 11222333 5555555555443 122234445555555555555543211
Q ss_pred chhc-----cCccCCEEEccCCCCc-----ccCC-CCCCCCCCEEECCCCcCcccc
Q psy11652 250 NTFE-----HLVNLKSISLSGNKLT-----RIPD-FIHNKRLSHLNLGYNFLNELI 294 (325)
Q Consensus 250 ~~l~-----~~~~L~~L~l~~n~l~-----~l~~-~~~~~~L~~L~l~~n~i~~~~ 294 (325)
..+. ..+.|+.|++++|.++ .+.. +..+++|+.+++++|.++..+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 1111 1245556666655554 1112 334455666666666655443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=7.9e-16 Score=134.53 Aligned_cols=221 Identities=19% Similarity=0.187 Sum_probs=142.2
Q ss_pred hhcccccceEEcCCCceeeecCCCc---CcccccCccEEECCCCcccc-------cc-cccCCCCccEEEccCCCCccc-
Q psy11652 23 QISCILLMSAENEDNQIAELETANW---SPEIQNKLTTLFIGENHIHQ-------IE-NLNGFRSILWLNMDSNLLQTL- 90 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-------~~-~~~~~~~L~~L~l~~~~~~~~- 90 (325)
...+.+|++++++++.++......+ .... +.+++|+++++.+.. ++ .+..+++|+.|++++|.+...
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3466679999999999864322122 0222 679999999987763 12 577799999999999988754
Q ss_pred -ccc--cC---CccEEEeecCcccch------hhhccC-CCCCEEEccCCccee-----ec--CCCCCCccEEEccCCcc
Q psy11652 91 -DSL--PK---TMETLSVANNYLVNY------LELNRM-TSLKWIVLSNNYIKE-----FV--IPNRKHIEKLDLSNNLI 150 (325)
Q Consensus 91 -~~l--~~---~L~~L~l~~~~l~~~------~~~~~~-~~L~~L~l~~~~~~~-----~~--~~~~~~L~~L~l~~~~~ 150 (325)
..+ .. +|++|++++|.+... ..+..+ ++|++|++++|.++. +. +..+.+|++|++++|.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 333 33 499999999987733 456677 899999999999872 22 44667899999999998
Q ss_pred ccc-----hhhccCCCCccEEEccCCcCccc-----ccCccCCccccEEEcccCCCcccChhhhhC-----ccccCCEEE
Q psy11652 151 STI-----NLNLNNTYYIKDLILSYNQISKL-----NANTFRNLNVFRLYLKFNKISEIHDFAFNG-----LNSTLEFLD 215 (325)
Q Consensus 151 ~~~-----~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~~L~~L~ 215 (325)
+.. +..+..+++|+.|++++|.++.. ...+...++|+.|++++|.+++.....+.. .+ .|+.|+
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~-~L~~L~ 256 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI-SLLTLS 256 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC-CceEEE
Confidence 742 34456667899999988876522 222222356666666666655432222221 12 555555
Q ss_pred ccCCCCc-----CchHhhhCCCCCCEEeCCCCccc
Q psy11652 216 LENNRLT-----NINQCFRNLKKLKYLYLHNNNIE 245 (325)
Q Consensus 216 l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~ 245 (325)
+.+|.++ .+...+..+++|+++++++|.++
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 5555543 12223334445555555555544
No 22
>KOG0617|consensus
Probab=99.62 E-value=6.1e-18 Score=127.43 Aligned_cols=178 Identities=22% Similarity=0.269 Sum_probs=134.3
Q ss_pred hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccE
Q psy11652 111 LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFR 188 (325)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 188 (325)
..+..+.+++.|.+++|+++.+| ++.+.+|+.|++.+|+++.+|..++.+++|+.|+++.|++...|..+.+.+.|+.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 34445566777778888888777 6677888888888888888877788888888888888888777777777788888
Q ss_pred EEcccCCCcc-cChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCC
Q psy11652 189 LYLKFNKISE-IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267 (325)
Q Consensus 189 L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 267 (325)
||+.+|.+.+ ..|..|-.+. .|+.|++++|.+.-+|...+++++|+.|.++.|.+-..+. .++.+.+|+.|++.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~-tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMT-TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHH-HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhcccce
Confidence 8888887753 3455566676 7888888888888888888888888888888888877665 67778888888888888
Q ss_pred CcccCC-CCCC---CCCCEEECCCCcC
Q psy11652 268 LTRIPD-FIHN---KRLSHLNLGYNFL 290 (325)
Q Consensus 268 l~~l~~-~~~~---~~L~~L~l~~n~i 290 (325)
++.+|+ ++++ .+-+...+..|++
T Consensus 185 l~vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 185 LTVLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred eeecChhhhhhhhhhhHHHHhhhhCCC
Confidence 888887 4433 2333445555554
No 23
>KOG1259|consensus
Probab=99.37 E-value=1.3e-13 Score=113.26 Aligned_cols=199 Identities=21% Similarity=0.187 Sum_probs=139.3
Q ss_pred cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCc-cccc-hhhccCCCCccEEEcc
Q psy11652 94 PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNL-ISTI-NLNLNNTYYIKDLILS 169 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~L~~L~l~ 169 (325)
+.+|+.+.++++.-..+ .....-|.|.++......++..| ......+.....+.-. .++. -..+...+.|++++++
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS 292 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS 292 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence 45566666665544444 22223355555555544444433 2122222222221111 1111 1122334678899999
Q ss_pred CCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccccc
Q psy11652 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQN 249 (325)
Q Consensus 170 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 249 (325)
+|.++.+...+--.++++.|+++.|.+..+. .+..++ +|+.||+++|.++.+..+-.++.+++.|.+.+|.+....
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS- 368 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS- 368 (490)
T ss_pred ccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcc-cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-
Confidence 9998888876644499999999999998775 477888 999999999999988888889999999999999887654
Q ss_pred chhccCccCCEEEccCCCCcccCC---CCCCCCCCEEECCCCcCccccccc
Q psy11652 250 NTFEHLVNLKSISLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNELILES 297 (325)
Q Consensus 250 ~~l~~~~~L~~L~l~~n~l~~l~~---~~~~~~L~~L~l~~n~i~~~~~~~ 297 (325)
.++.+-+|..||+.+|+|..+.. ++.+|.|+.+.+.+|++..+++..
T Consensus 369 -GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 369 -GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred -hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 36677899999999999986554 899999999999999999998875
No 24
>KOG3207|consensus
Probab=99.33 E-value=1.7e-13 Score=117.64 Aligned_cols=151 Identities=18% Similarity=0.207 Sum_probs=92.7
Q ss_pred ccCCCCccEEEccCCCCccc--ccc---cCCccEEEeecCcccch----hhhccCCCCCEEEccCCcceeec----CCCC
Q psy11652 71 LNGFRSILWLNMDSNLLQTL--DSL---PKTMETLSVANNYLVNY----LELNRMTSLKWIVLSNNYIKEFV----IPNR 137 (325)
Q Consensus 71 ~~~~~~L~~L~l~~~~~~~~--~~l---~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~ 137 (325)
-.++.+|+.+.++++.+... .+. +++++.|++++|-+... ....++|+|+.|+++.|.+.... ...+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34577888888888776665 223 88888888888877666 56778888888888888776322 4467
Q ss_pred CCccEEEccCCccccc--hhhccCCCCccEEEccCCc-CcccccCccCCccccEEEcccCCCcccC-hhhhhCccccCCE
Q psy11652 138 KHIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQ-ISKLNANTFRNLNVFRLYLKFNKISEIH-DFAFNGLNSTLEF 213 (325)
Q Consensus 138 ~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~ 213 (325)
++++.|.++.|+++.- ......+|+|+.|++.+|. +.......--.+.|+.|++++|.+-..+ ......+| .|..
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc-chhh
Confidence 7788888888877643 3344566777777777774 2111111111255556666665443322 12233344 5555
Q ss_pred EEccCCCCc
Q psy11652 214 LDLENNRLT 222 (325)
Q Consensus 214 L~l~~~~l~ 222 (325)
|+++.+++.
T Consensus 276 Lnls~tgi~ 284 (505)
T KOG3207|consen 276 LNLSSTGIA 284 (505)
T ss_pred hhccccCcc
Confidence 555555544
No 25
>KOG1259|consensus
Probab=99.29 E-value=9e-13 Score=108.29 Aligned_cols=124 Identities=27% Similarity=0.287 Sum_probs=52.8
Q ss_pred CCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccC
Q psy11652 117 TSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFN 194 (325)
Q Consensus 117 ~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 194 (325)
..|+++++++|.++.+. ..-.+.++.|+++.|.+..+.. +..+++|+.|++++|.+..+..+-..+-++++|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 34444555555444333 2334445555555555444411 44444555555555544444433333344444444444
Q ss_pred CCcccChhhhhCccccCCEEEccCCCCcCchH--hhhCCCCCCEEeCCCCcc
Q psy11652 195 KISEIHDFAFNGLNSTLEFLDLENNRLTNINQ--CFRNLKKLKYLYLHNNNI 244 (325)
Q Consensus 195 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l 244 (325)
.+..+. .+..+. +|..||+++|.|..+.. .+++++.|..+.+.+|.+
T Consensus 363 ~iE~LS--GL~KLY-SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 363 KIETLS--GLRKLY-SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hHhhhh--hhHhhh-hheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 443331 223333 44444444444443322 333344444444444433
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=1.9e-12 Score=101.15 Aligned_cols=116 Identities=25% Similarity=0.318 Sum_probs=32.1
Q ss_pred CccEEECCCCccccccccc-CCCCccEEEccCCCCcccccc--cCCccEEEeecCcccch-hhh-ccCCCCCEEEccCCc
Q psy11652 54 KLTTLFIGENHIHQIENLN-GFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNY-LEL-NRMTSLKWIVLSNNY 128 (325)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~-~~~-~~~~~L~~L~l~~~~ 128 (325)
.+++|+|+++.|+.+..+. .+.+|+.|++++|.+..++.+ +++|+.|++++|.++.+ ..+ ..+++|++|++++|.
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence 4455555555555444333 344555555555555554444 45555555555555544 222 235555555555555
Q ss_pred ceeec----CCCCCCccEEEccCCccccc----hhhccCCCCccEEEcc
Q psy11652 129 IKEFV----IPNRKHIEKLDLSNNLISTI----NLNLNNTYYIKDLILS 169 (325)
Q Consensus 129 ~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~ 169 (325)
+..+. ...+++|+.|++.+|+++.. ...+..+|+|+.|+-.
T Consensus 100 I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 100 ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 54322 33455555555555555433 2335556666666543
No 27
>KOG3207|consensus
Probab=99.28 E-value=5.7e-13 Score=114.43 Aligned_cols=172 Identities=20% Similarity=0.171 Sum_probs=95.5
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc----cccCCCCccEEEccCCCCccc-cc----cc
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE----NLNGFRSILWLNMDSNLLQTL-DS----LP 94 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-~~----l~ 94 (325)
.+..+|+...+.++.+...+.... .+.+++++.|+|+.|-+..+. ....+|+|+.|+++.|++... ++ ..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~-~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEY-SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhh-hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 355666666666666665554333 344466777777666555443 344566677777766665544 11 16
Q ss_pred CCccEEEeecCcccch---hhhccCCCCCEEEccCCcce---eecCCCCCCccEEEccCCccccch--hhccCCCCccEE
Q psy11652 95 KTMETLSVANNYLVNY---LELNRMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTIN--LNLNNTYYIKDL 166 (325)
Q Consensus 95 ~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L 166 (325)
+.|+.|.++.|.++.- ..+..+|+|++|++..|... ..+...++.|+.|++++|.+...+ ...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 6666666666666533 44555666666666666321 222445566666666666655542 334556666666
Q ss_pred EccCCcCcccccCcc-------CCccccEEEcccCCC
Q psy11652 167 ILSYNQISKLNANTF-------RNLNVFRLYLKFNKI 196 (325)
Q Consensus 167 ~l~~~~l~~~~~~~~-------~~~~L~~L~l~~~~l 196 (325)
++..+.+.++..... ..++|++|++..|.+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 666665553322111 124555555555554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=4.2e-12 Score=99.31 Aligned_cols=119 Identities=23% Similarity=0.318 Sum_probs=39.3
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc-ccc---cCCccEE
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSL---PKTMETL 100 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l---~~~L~~L 100 (325)
++.++++|+++++.|+.+.. + +....+|+.|++++|.+..++.+..++.|++|++++|.+.++ +.+ +++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~--L-~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN--L-GATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S-----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc--h-hhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 44456777777777776654 2 222266777777777777666666677777777777777666 333 5677777
Q ss_pred EeecCcccch---hhhccCCCCCEEEccCCcceeec------CCCCCCccEEEcc
Q psy11652 101 SVANNYLVNY---LELNRMTSLKWIVLSNNYIKEFV------IPNRKHIEKLDLS 146 (325)
Q Consensus 101 ~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~L~~L~l~ 146 (325)
++++|.+... ..+..+++|+.|++.+|.++.-+ +..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7777766555 56666677777777777666333 3356666666543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=9.3e-12 Score=112.09 Aligned_cols=195 Identities=33% Similarity=0.368 Sum_probs=140.6
Q ss_pred EEEeecCcc-cchhhhccCCCCCEEEccCCcceeec-CC-CC-CCccEEEccCCccccchhhccCCCCccEEEccCCcCc
Q psy11652 99 TLSVANNYL-VNYLELNRMTSLKWIVLSNNYIKEFV-IP-NR-KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQIS 174 (325)
Q Consensus 99 ~L~l~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 174 (325)
.+....+.+ .....+...+.++.+.+.++.++.++ .. .. ++|+.|++++|.+..++..+..+++|+.|++..|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 466666665 33355555677888888888888777 33 33 2788888888888877666778888888888888888
Q ss_pred ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc
Q psy11652 175 KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH 254 (325)
Q Consensus 175 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 254 (325)
.++......+.++.|++++|.+..+++.. ..+..++++.+++|.+...+..+..+.++..+.+.+|++...+ ..++.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~ 253 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP-ESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhh--hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc-chhcc
Confidence 77776556688888888888888776431 2332588888888865556666777778888887777766542 25666
Q ss_pred CccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccc
Q psy11652 255 LVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILE 296 (325)
Q Consensus 255 ~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~ 296 (325)
++.++.|++++|.++.++.++...+++.+++++|.+..+++.
T Consensus 254 l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 254 LSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccceeccccccccccccccccCccCEEeccCccccccchh
Confidence 777888888888888777777778888888888877765444
No 30
>KOG1909|consensus
Probab=99.23 E-value=8.1e-13 Score=110.48 Aligned_cols=130 Identities=24% Similarity=0.277 Sum_probs=59.6
Q ss_pred CCCccEEEccCCcCcccccC----ccC-CccccEEEcccCCCccc----ChhhhhCccccCCEEEccCCCCc-----Cch
Q psy11652 160 TYYIKDLILSYNQISKLNAN----TFR-NLNVFRLYLKFNKISEI----HDFAFNGLNSTLEFLDLENNRLT-----NIN 225 (325)
Q Consensus 160 ~~~L~~L~l~~~~l~~~~~~----~~~-~~~L~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~~~l~-----~~~ 225 (325)
.+.|+.++..+|++...+.. .++ .+.|+.+.++.|.|..- ....|..++ .|+.|++.+|-++ .+.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHH
Confidence 34455555555554422211 111 14455555555544321 123344444 5555555555444 222
Q ss_pred HhhhCCCCCCEEeCCCCcccccc-----cchhccCccCCEEEccCCCCc-----ccCC-CCCCCCCCEEECCCCcC
Q psy11652 226 QCFRNLKKLKYLYLHNNNIEFIQ-----NNTFEHLVNLKSISLSGNKLT-----RIPD-FIHNKRLSHLNLGYNFL 290 (325)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~l~~~~-----~~~l~~~~~L~~L~l~~n~l~-----~l~~-~~~~~~L~~L~l~~n~i 290 (325)
..+..+++|+.++++.|.+..-. ...-...++|+.+.+.+|.++ .+.. +...+.|..|++++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 34555555666666555544211 111122355666666666555 1111 34455566666666665
No 31
>KOG1909|consensus
Probab=99.20 E-value=1.5e-11 Score=103.05 Aligned_cols=220 Identities=17% Similarity=0.162 Sum_probs=156.2
Q ss_pred cCCccEEEeecCcccch------hhhccCCCCCEEEccCCcce----eec---------CCCCCCccEEEccCCccccc-
Q psy11652 94 PKTMETLSVANNYLVNY------LELNRMTSLKWIVLSNNYIK----EFV---------IPNRKHIEKLDLSNNLISTI- 153 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~~~~~----~~~---------~~~~~~L~~L~l~~~~~~~~- 153 (325)
...++.+++++|.+..- ..+.+.+.|+..++++-... .+| ...+++|++|++++|.+..-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 56677777777765433 45566667777776643211 222 23566888889888887643
Q ss_pred ----hhhccCCCCccEEEccCCcCcccc--------------cCccCCccccEEEcccCCCcccCh----hhhhCccccC
Q psy11652 154 ----NLNLNNTYYIKDLILSYNQISKLN--------------ANTFRNLNVFRLYLKFNKISEIHD----FAFNGLNSTL 211 (325)
Q Consensus 154 ----~~~~~~~~~L~~L~l~~~~l~~~~--------------~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L 211 (325)
...++++.+|++|++.+|.+.... ..+...++|+.+...+|++..... ..|...+ +|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~-~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP-TL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc-cc
Confidence 234677888999999998876222 223334889999999999876543 4556676 99
Q ss_pred CEEEccCCCCc--C---chHhhhCCCCCCEEeCCCCccccc----ccchhccCccCCEEEccCCCCcc-----cCC--CC
Q psy11652 212 EFLDLENNRLT--N---INQCFRNLKKLKYLYLHNNNIEFI----QNNTFEHLVNLKSISLSGNKLTR-----IPD--FI 275 (325)
Q Consensus 212 ~~L~l~~~~l~--~---~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~-----l~~--~~ 275 (325)
+.+.+..|.|. . +...+..|++|+.|+++.|-++.- ....++.|++|+.+++++|.+.. +.. -.
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 99999999886 2 234789999999999999988742 23466778999999999998872 222 34
Q ss_pred CCCCCCEEECCCCcCcccccccc----cchhhhcccccccccc
Q psy11652 276 HNKRLSHLNLGYNFLNELILESS----IVENEIIDQNMLFNSN 314 (325)
Q Consensus 276 ~~~~L~~L~l~~n~i~~~~~~~~----~~~~~~~~~~~~~~~~ 314 (325)
..|+|+++.+.+|.|+.-..... .....+..+++.+|++
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 47899999999999986544432 1234577788888888
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.8e-11 Score=108.18 Aligned_cols=188 Identities=26% Similarity=0.353 Sum_probs=124.8
Q ss_pred EEECCCCccc-ccccccCCCCccEEEccCCCCccccc-c--cC-CccEEEeecCcccch-hhhccCCCCCEEEccCCcce
Q psy11652 57 TLFIGENHIH-QIENLNGFRSILWLNMDSNLLQTLDS-L--PK-TMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIK 130 (325)
Q Consensus 57 ~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-l--~~-~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~ 130 (325)
.++...+.+. ........+.++.+++.++.+.++.. . .. +|+.|++++|.+..+ ..+..+++|+.|+++.|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4666666553 32244555677777777777777722 2 42 777777777777777 57777777777777777777
Q ss_pred eec-CC-CCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCcc
Q psy11652 131 EFV-IP-NRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLN 208 (325)
Q Consensus 131 ~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 208 (325)
.++ .. ..+.|+.|++++|.+..+|........|+.+.+.+|.+...+.......++..+.+.++.+... +..+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~ 255 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhcccc
Confidence 777 22 6777777777777777775544455557777777775555555555556677777777666543 23445555
Q ss_pred ccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccc
Q psy11652 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFI 247 (325)
Q Consensus 209 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~ 247 (325)
+++.+++++|.+..++. ++...+++.|+++++.+...
T Consensus 256 -~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 256 -NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred -ccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 67777777777776666 66777777777777766544
No 33
>KOG0532|consensus
Probab=99.10 E-value=1.8e-12 Score=114.83 Aligned_cols=174 Identities=23% Similarity=0.267 Sum_probs=104.3
Q ss_pred cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccC
Q psy11652 94 PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (325)
+..-...+++.|.+..+ ..+..+..|+.+.++.|.+..+| ...+..|++++++.|.+..+|..+..++ |+.|.+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 33444556666666666 55555566666666666666655 5566667777777776666655554444 66666666
Q ss_pred CcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccc
Q psy11652 171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250 (325)
Q Consensus 171 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 250 (325)
|+++.++..+.....|..|+++.|.+..+++ .+..+. +|+.+.+..|++..+|..+. .-.|..|+++.|++..+|.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~-slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv- 228 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLT-SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPV- 228 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchH-HhhhHH-HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecch-
Confidence 6666666666533666666666666655543 344554 56666666666666665554 3345556666666655544
Q ss_pred hhccCccCCEEEccCCCCcccC
Q psy11652 251 TFEHLVNLKSISLSGNKLTRIP 272 (325)
Q Consensus 251 ~l~~~~~L~~L~l~~n~l~~l~ 272 (325)
.|..+..|++|-|.+|.+++=|
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhhheeeeeccCCCCCCh
Confidence 4555666666666666666433
No 34
>KOG0531|consensus
Probab=99.04 E-value=2.2e-11 Score=110.11 Aligned_cols=238 Identities=27% Similarity=0.314 Sum_probs=164.5
Q ss_pred cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccccc-c--cCCccEEEeecCcccchhhhccCCCCCEEEccCCc
Q psy11652 53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTLDS-L--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNY 128 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~ 128 (325)
..++.+.++.+.+..+. .+..+.+|..+++.+|.+..+.. + +++|++|++++|.++.+..+..++.|+.|++.+|.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence 56777777777777644 57778888888888888887755 5 88888888888888888777777778888888888
Q ss_pred ceeec-CCCCCCccEEEccCCccccchhh-ccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhC
Q psy11652 129 IKEFV-IPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNG 206 (325)
Q Consensus 129 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 206 (325)
+..+. +..+..|+.+++++|.+..+... ...+.+++.+.+.+|.+..+... -....+..+++..|.++.+.+.. .
T Consensus 152 i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~-~~~~~l~~~~l~~n~i~~~~~l~--~ 228 (414)
T KOG0531|consen 152 ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGL-DLLKKLVLLSLLDNKISKLEGLN--E 228 (414)
T ss_pred chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccch-HHHHHHHHhhcccccceeccCcc--c
Confidence 88777 55688888888888888777321 46677888888888876654432 12345555577777776554221 2
Q ss_pred cccc--CCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc---c-cCC--CCCCC
Q psy11652 207 LNST--LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT---R-IPD--FIHNK 278 (325)
Q Consensus 207 ~~~~--L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~---~-l~~--~~~~~ 278 (325)
.. . |+.+++.++.+...+..+..+..+..+++..+.+..... +...+.+..+....+.+. . ... ....+
T Consensus 229 ~~-~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 229 LV-MLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred ch-hHHHHHHhcccCccccccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccc
Confidence 22 2 778888888877665556677778888888877665433 334456666666666655 1 111 45567
Q ss_pred CCCEEECCCCcCcccccc
Q psy11652 279 RLSHLNLGYNFLNELILE 296 (325)
Q Consensus 279 ~L~~L~l~~n~i~~~~~~ 296 (325)
.++.+.+.+|++......
T Consensus 306 ~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 306 TLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccccccccCcccccccc
Confidence 788888888887765543
No 35
>KOG0532|consensus
Probab=99.04 E-value=8.2e-12 Score=110.78 Aligned_cols=188 Identities=18% Similarity=0.250 Sum_probs=131.4
Q ss_pred EECCCCcccccc--cc-cCCCCccEEEccCCCCccc-ccc--cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcce
Q psy11652 58 LFIGENHIHQIE--NL-NGFRSILWLNMDSNLLQTL-DSL--PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIK 130 (325)
Q Consensus 58 L~l~~~~~~~~~--~~-~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~ 130 (325)
|.|++-.+...| +. -.+.--...|++.|++..+ .++ +..|..+.+..|.+..+ ..+.++..|..++++.|.++
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence 444444444444 11 2233445566777777666 444 66777777777777777 77777778888888888887
Q ss_pred eec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccc
Q psy11652 131 EFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS 209 (325)
Q Consensus 131 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 209 (325)
.+| -...--|+.|-+++|.++.+|..++..+.|..|+.+.|.+..+++.+....+|+.|.+..|.+..++++ +..+
T Consensus 135 ~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L-- 211 (722)
T KOG0532|consen 135 HLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL-- 211 (722)
T ss_pred cCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC--
Confidence 777 344556777777888887777777777777788888887777777777777888888888877777653 3455
Q ss_pred cCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccc
Q psy11652 210 TLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ 248 (325)
Q Consensus 210 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~ 248 (325)
.|..||++.|++..+|..|.++..|++|-+.+|.+..-+
T Consensus 212 pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 377788888888888878888888888888888776533
No 36
>KOG0531|consensus
Probab=98.93 E-value=8.8e-11 Score=106.18 Aligned_cols=237 Identities=28% Similarity=0.359 Sum_probs=162.0
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCccccccc-ccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN-LNGFRSILWLNMDSNLLQTLDSL--PKTMETLS 101 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~ 101 (325)
.+..+..+++..+.|+.+.. .+ +.+ .+|+.|++.++.+..+.. +..+++|++|++++|.+.++..+ ++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~-~l-~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILN-HL-SKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhc-cc-ccc-cceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 56677777788888877333 34 445 899999999999998885 88899999999999999988666 77799999
Q ss_pred eecCcccchhhhccCCCCCEEEccCCcceeecC---CCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccccc
Q psy11652 102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFVI---PNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA 178 (325)
Q Consensus 102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 178 (325)
+.+|.++.+..+..++.|+.+++++|.+..+.. ..+.+++.+++.+|.+..+ ..+..+..+..+++..|.+..+..
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC
Confidence 999999988777779999999999999887774 6778888889999888765 123333444445667776665443
Q ss_pred CccCCc--cccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccc---ccc-chh
Q psy11652 179 NTFRNL--NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEF---IQN-NTF 252 (325)
Q Consensus 179 ~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~---~~~-~~l 252 (325)
.. ... +|+.++++++++.... ..+..+. .+..+++..+.+..+.. +.....+..+....+.+.. ... ...
T Consensus 226 l~-~~~~~~L~~l~l~~n~i~~~~-~~~~~~~-~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (414)
T KOG0531|consen 226 LN-ELVMLHLRELYLSGNRISRSP-EGLENLK-NLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYIT 301 (414)
T ss_pred cc-cchhHHHHHHhcccCcccccc-ccccccc-cccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccc
Confidence 22 122 3788888888877652 2344555 77777777776654432 2233444444444444331 111 113
Q ss_pred ccCccCCEEEccCCCCc
Q psy11652 253 EHLVNLKSISLSGNKLT 269 (325)
Q Consensus 253 ~~~~~L~~L~l~~n~l~ 269 (325)
+..+.++...+.++.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 302 SAAPTLVTLTLELNPIR 318 (414)
T ss_pred cccccccccccccCccc
Confidence 34456677777766655
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=2.5e-09 Score=68.91 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=53.3
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCC
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLL 87 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 87 (325)
|+|++|++++|.++.++...| ..+ ++|++|++++|.+..++ .|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-SNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-TTG-TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHH-cCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999999998778 777 99999999999999888 899999999999999864
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.5e-09 Score=69.97 Aligned_cols=58 Identities=40% Similarity=0.543 Sum_probs=35.3
Q ss_pred CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcC
Q psy11652 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFL 290 (325)
Q Consensus 233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i 290 (325)
+|++|++++|+++.+++..|.++++|+.|++++|.++.+++ |..+++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45566666666666655566666666666666666665554 56666666666666653
No 39
>KOG1859|consensus
Probab=98.67 E-value=9.9e-10 Score=100.49 Aligned_cols=131 Identities=24% Similarity=0.255 Sum_probs=86.5
Q ss_pred ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEc
Q psy11652 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263 (325)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 263 (325)
..|.+.+++.|.+..+. ..+.-++ .++.|++++|++..+. .+..|++|++|+++-|+++.++.....++. |+.|.+
T Consensus 164 n~L~~a~fsyN~L~~mD-~SLqll~-ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMD-ESLQLLP-ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHH-HHHHHHH-HhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 45666677777665443 3455555 7777777777777665 466777777777777777776665555554 777777
Q ss_pred cCCCCcccCCCCCCCCCCEEECCCCcCcccccc-cccchhhhcccccccccceeec
Q psy11652 264 SGNKLTRIPDFIHNKRLSHLNLGYNFLNELILE-SSIVENEIIDQNMLFNSNAVME 318 (325)
Q Consensus 264 ~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 318 (325)
+||.++.+-.+.++.+|+.||+++|-|.+-..- ..+...++..+.+.+|.+++-|
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 777777666667777777777777766554333 2344556666777777776543
No 40
>KOG4658|consensus
Probab=98.65 E-value=2.8e-08 Score=96.61 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=53.6
Q ss_pred cccccceEEcCCCc--eeeecCCCcCcccccCccEEECCCC-cccccc-cccCCCCccEEEccCCCCccc-ccc--cCCc
Q psy11652 25 SCILLMSAENEDNQ--IAELETANWSPEIQNKLTTLFIGEN-HIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTM 97 (325)
Q Consensus 25 ~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L 97 (325)
.|++|++|-+..+. +..++..-| ..+ |.|+.|++++| .+..+| .++++-+||+|+++++.+..+ .++ +..|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff-~~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFF-RSL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHH-hhC-cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 55566666666554 455555222 333 66666666654 345556 556666666666666666555 444 5566
Q ss_pred cEEEeecCccc-ch-hhhccCCCCCEEEccC
Q psy11652 98 ETLSVANNYLV-NY-LELNRMTSLKWIVLSN 126 (325)
Q Consensus 98 ~~L~l~~~~l~-~~-~~~~~~~~L~~L~l~~ 126 (325)
.+|++..+... .+ .....+.+|++|.+..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeec
Confidence 66666554321 11 2333355666665543
No 41
>KOG2982|consensus
Probab=98.61 E-value=2.1e-08 Score=82.82 Aligned_cols=196 Identities=17% Similarity=0.178 Sum_probs=98.7
Q ss_pred cCCccEEEeecCcccch----hhhccCCCCCEEEccCCccee-ec--CCCCCCccEEEccCCccccc--hhhccCCCCcc
Q psy11652 94 PKTMETLSVANNYLVNY----LELNRMTSLKWIVLSNNYIKE-FV--IPNRKHIEKLDLSNNLISTI--NLNLNNTYYIK 164 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~ 164 (325)
.+.++.+++.+|.++.. ..+.++|.|++|+++.|.+.. +. .....+|+.|-+.+..+... -..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 55666666666655544 345566666666666665542 22 13455666666655554322 23345566666
Q ss_pred EEEccCCcCccccc--CccC--CccccEEEcccCCCcc-cChhhhh-CccccCCEEEccCCCCcCchH--hhhCCCCCCE
Q psy11652 165 DLILSYNQISKLNA--NTFR--NLNVFRLYLKFNKISE-IHDFAFN-GLNSTLEFLDLENNRLTNINQ--CFRNLKKLKY 236 (325)
Q Consensus 165 ~L~l~~~~l~~~~~--~~~~--~~~L~~L~l~~~~l~~-~~~~~~~-~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~ 236 (325)
+|+++.|.+..+.. .-.. .+.++++.+-+|.... .....+. .+| ++..+-+-.+.+..... .+..++.+..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp-nv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP-NVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc-cchheeeecCcccchhhcccCCCCCcchh
Confidence 66666664432211 1111 1345555554443321 1111111 233 66666666665543322 3444555666
Q ss_pred EeCCCCccccccc-chhccCccCCEEEccCCCCc-cc----CC---CCCCCCCCEEECCCCcCcc
Q psy11652 237 LYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLT-RI----PD---FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 237 L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~-~l----~~---~~~~~~L~~L~l~~n~i~~ 292 (325)
|+++.+++..+.. ..+.++++|..|.+.++.+. .+ +. ++.+++++.|+= .+|+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG--skIss 291 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG--SKISS 291 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC--cccch
Confidence 6777666665332 24556677777777776665 11 11 566666666543 25543
No 42
>KOG1859|consensus
Probab=98.58 E-value=3.5e-10 Score=103.33 Aligned_cols=126 Identities=26% Similarity=0.283 Sum_probs=97.8
Q ss_pred CccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCC
Q psy11652 162 YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLH 240 (325)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~ 240 (325)
.|...+.+.|.+..+...+.-.+.++.|+++.|+++... ++..++ .|+.||+++|.+..+|. ...+|. |..|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc-cccccccccchhccccccchhhhh-heeeeec
Confidence 466677777777766655443488999999999988774 778888 99999999999888876 334444 8999999
Q ss_pred CCcccccccchhccCccCCEEEccCCCCcccCC---CCCCCCCCEEECCCCcCccc
Q psy11652 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNEL 293 (325)
Q Consensus 241 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~---~~~~~~L~~L~l~~n~i~~~ 293 (325)
+|.++.+.. +.++.+|+.||+++|-+..... ++.+..|+.|.+.||++-.=
T Consensus 241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 998876543 6778899999999998885443 67777889999999988543
No 43
>KOG4658|consensus
Probab=98.57 E-value=4.3e-08 Score=95.31 Aligned_cols=78 Identities=15% Similarity=0.279 Sum_probs=40.5
Q ss_pred cccccceEEcCC-CceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc---cCCcc
Q psy11652 25 SCILLMSAENED-NQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL---PKTME 98 (325)
Q Consensus 25 ~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l---~~~L~ 98 (325)
.++.|+.||+++ ..+..+|. .+ +++ -+|++|+++++.+..+| .+.+++.|.+|++..+..... ... +++|+
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~-~I-~~L-i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPS-SI-GEL-VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred hCcceEEEECCCCCccCcCCh-HH-hhh-hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 455566666653 34445555 44 444 45566666655555555 555555566665554432222 111 55555
Q ss_pred EEEeecC
Q psy11652 99 TLSVANN 105 (325)
Q Consensus 99 ~L~l~~~ 105 (325)
+|.+...
T Consensus 646 ~L~l~~s 652 (889)
T KOG4658|consen 646 VLRLPRS 652 (889)
T ss_pred EEEeecc
Confidence 5555444
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=2.6e-07 Score=87.73 Aligned_cols=103 Identities=21% Similarity=0.276 Sum_probs=62.4
Q ss_pred ccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEcc
Q psy11652 186 VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264 (325)
Q Consensus 186 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 264 (325)
+..|+++++.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 55566666666655555666666 6666666666665 555566666666666666666665555566666666666666
Q ss_pred CCCCc-ccCC-CCC-CCCCCEEECCCCc
Q psy11652 265 GNKLT-RIPD-FIH-NKRLSHLNLGYNF 289 (325)
Q Consensus 265 ~n~l~-~l~~-~~~-~~~L~~L~l~~n~ 289 (325)
+|.++ .+|. +.. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 66665 5554 322 2344555666554
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.56 E-value=5e-09 Score=85.34 Aligned_cols=184 Identities=21% Similarity=0.194 Sum_probs=98.0
Q ss_pred hhhccCCCCCEEEccCCcce-eec------CCCCCCccEEEccCCccccc-h-------------hhccCCCCccEEEcc
Q psy11652 111 LELNRMTSLKWIVLSNNYIK-EFV------IPNRKHIEKLDLSNNLISTI-N-------------LNLNNTYYIKDLILS 169 (325)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~~~-~~~------~~~~~~L~~L~l~~~~~~~~-~-------------~~~~~~~~L~~L~l~ 169 (325)
.++.+||.|+.++++.|.|. .+| +.....|.+|.+++|++..+ . .-..+-|.|+.+++.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 44555566666666666554 222 23444555555555554433 0 113445678888888
Q ss_pred CCcCcccccC----ccCC-ccccEEEcccCCCccc--Chhhh---hCccccCCEEEccCCCCcC-----chHhhhCCCCC
Q psy11652 170 YNQISKLNAN----TFRN-LNVFRLYLKFNKISEI--HDFAF---NGLNSTLEFLDLENNRLTN-----INQCFRNLKKL 234 (325)
Q Consensus 170 ~~~l~~~~~~----~~~~-~~L~~L~l~~~~l~~~--~~~~~---~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L 234 (325)
.|++...+.. .+.. ..++.+.+..|.|... ..-.+ ..+. +|+.|++.+|.++. +...+..++.|
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHHHhcccchh
Confidence 8777644322 1122 4677777777766532 11111 1233 67777777776652 22255566667
Q ss_pred CEEeCCCCcccccccc-hhc-----cCccCCEEEccCCCCc-------ccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 235 KYLYLHNNNIEFIQNN-TFE-----HLVNLKSISLSGNKLT-------RIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 235 ~~L~l~~~~l~~~~~~-~l~-----~~~~L~~L~l~~n~l~-------~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
+.|++..|-++.-... .+. ..++|..|...+|.+. .++. -..+|-|..+.+.||+|+...+
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d 320 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELAD 320 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHH
Confidence 7777777755421110 111 1356667776666543 1222 3445566666677777765443
No 46
>KOG2982|consensus
Probab=98.55 E-value=2.1e-08 Score=82.77 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=38.3
Q ss_pred ccCccEEECCCCcccccc----cccCCCCccEEEccCCCCccc-ccc---cCCccEEEeecCcccch---hhhccCCCCC
Q psy11652 52 QNKLTTLFIGENHIHQIE----NLNGFRSILWLNMDSNLLQTL-DSL---PKTMETLSVANNYLVNY---LELNRMTSLK 120 (325)
Q Consensus 52 ~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-~~l---~~~L~~L~l~~~~l~~~---~~~~~~~~L~ 120 (325)
+.+++.++|.+|.++++. .+.++|.|++|+++.|.+... ..+ ..+|+.|-+.+..+.-. ..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 355555555555555544 344555555555555555444 222 45555555555433211 3444445555
Q ss_pred EEEccCCc
Q psy11652 121 WIVLSNNY 128 (325)
Q Consensus 121 ~L~l~~~~ 128 (325)
+|.++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 55555543
No 47
>KOG2120|consensus
Probab=98.50 E-value=5.1e-09 Score=86.40 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=37.6
Q ss_pred ccEEECCCCcccccc---cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecC-cccch---hhhccCCCCCEEE
Q psy11652 55 LTTLFIGENHIHQIE---NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANN-YLVNY---LELNRMTSLKWIV 123 (325)
Q Consensus 55 L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~-~l~~~---~~~~~~~~L~~L~ 123 (325)
|++|+|++..++.-. .+..|.+|+.|.+.++++.+. ..+ -.+|+.|+++.+ .++.. ..+..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 555555555544322 345555555555555555443 222 455555555554 23222 3445555555555
Q ss_pred ccCCcc
Q psy11652 124 LSNNYI 129 (325)
Q Consensus 124 l~~~~~ 129 (325)
+++|..
T Consensus 267 lsWc~l 272 (419)
T KOG2120|consen 267 LSWCFL 272 (419)
T ss_pred chHhhc
Confidence 555544
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=3.9e-07 Score=86.52 Aligned_cols=103 Identities=23% Similarity=0.202 Sum_probs=83.7
Q ss_pred CCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCC
Q psy11652 211 LEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGY 287 (325)
Q Consensus 211 L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~ 287 (325)
++.|+++++.+. .+|..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.++ .+|. +..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 778999999887 77888999999999999999999877778899999999999999998 6777 99999999999999
Q ss_pred CcCcccccccccc-hhhhccccccccc
Q psy11652 288 NFLNELILESSIV-ENEIIDQNMLFNS 313 (325)
Q Consensus 288 n~i~~~~~~~~~~-~~~~~~~~~~~~~ 313 (325)
|.+++..+..... ......+++..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 9998655543221 1223344555544
No 49
>KOG1644|consensus
Probab=98.44 E-value=4.1e-07 Score=71.14 Aligned_cols=120 Identities=15% Similarity=0.223 Sum_probs=88.5
Q ss_pred cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc-ccc---cCCccEEEeec
Q psy11652 29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSL---PKTMETLSVAN 104 (325)
Q Consensus 29 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l---~~~L~~L~l~~ 104 (325)
=+++++.+..+..+.. . +....+...++|++|.+..++.|..++.|.+|.+.+|+++.+ +.+ +++|+.|.+.+
T Consensus 21 e~e~~LR~lkip~ien--l-g~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--L-GATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh--c-cccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3455566555554444 2 334478888999999888888888899999999999999888 444 88899999999
Q ss_pred Ccccch---hhhccCCCCCEEEccCCcceeec------CCCCCCccEEEccCCccc
Q psy11652 105 NYLVNY---LELNRMTSLKWIVLSNNYIKEFV------IPNRKHIEKLDLSNNLIS 151 (325)
Q Consensus 105 ~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~L~~L~l~~~~~~ 151 (325)
|.+..+ ..+..+|.|++|.+-+|.++.-+ ...+++|+.||+.+-...
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 877666 67778888888888888777433 346777777777655443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=3.5e-07 Score=74.82 Aligned_cols=201 Identities=13% Similarity=0.159 Sum_probs=141.4
Q ss_pred cCCccEEEeecCcccch------hhhccCCCCCEEEccCCcce----ee--------c-CCCCCCccEEEccCCccccc-
Q psy11652 94 PKTMETLSVANNYLVNY------LELNRMTSLKWIVLSNNYIK----EF--------V-IPNRKHIEKLDLSNNLISTI- 153 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~~~~~----~~--------~-~~~~~~L~~L~l~~~~~~~~- 153 (325)
+..+..+++++|.+..- ..+.+..+|+..+++.-... .+ + ...+++++.+++++|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 66777777777766543 45556677777777653222 11 1 45889999999999998654
Q ss_pred ----hhhccCCCCccEEEccCCcCccccc--------------CccCCccccEEEcccCCCcccCh----hhhhCccccC
Q psy11652 154 ----NLNLNNTYYIKDLILSYNQISKLNA--------------NTFRNLNVFRLYLKFNKISEIHD----FAFNGLNSTL 211 (325)
Q Consensus 154 ----~~~~~~~~~L~~L~l~~~~l~~~~~--------------~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L 211 (325)
...+++...|++|.+.+|.+..+.. .+...+.|++++...|++..-+. ..+.... ++
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~-~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE-NL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc-Cc
Confidence 3457888999999999998874332 12233789999999998875433 2333444 89
Q ss_pred CEEEccCCCCc--CchH----hhhCCCCCCEEeCCCCcccc----cccchhccCccCCEEEccCCCCcc--cCC------
Q psy11652 212 EFLDLENNRLT--NINQ----CFRNLKKLKYLYLHNNNIEF----IQNNTFEHLVNLKSISLSGNKLTR--IPD------ 273 (325)
Q Consensus 212 ~~L~l~~~~l~--~~~~----~~~~~~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~l~~--l~~------ 273 (325)
+++.+..|+|. .+.. .+..+.+|..|+++.|-++. .....++.|+.|+.|.+..|.++. ...
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 99999999987 2222 45677899999999998874 333456678889999999998872 111
Q ss_pred CCCCCCCCEEECCCCcCccccc
Q psy11652 274 FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 274 ~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
--..|+|..|...+|.+..-..
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred hhcCCCccccccchhhhcCcee
Confidence 2344789999999997765433
No 51
>KOG4579|consensus
Probab=98.41 E-value=9.4e-09 Score=75.21 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=72.7
Q ss_pred ccEEEccCCcCccccc---CccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeC
Q psy11652 163 IKDLILSYNQISKLNA---NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYL 239 (325)
Q Consensus 163 L~~L~l~~~~l~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 239 (325)
+..++++.|.+..++. .......|..+++++|.+...++..-..+| .++.+++.+|.+.++|..+..++.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~-t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFP-TATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccc-hhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3445555665553332 222336666777777777776655444455 778888888888888877778888888888
Q ss_pred CCCcccccccchhccCccCCEEEccCCCCcccCC
Q psy11652 240 HNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273 (325)
Q Consensus 240 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~ 273 (325)
+.|.+...+...+. +.++-.|+..+|.+..+|.
T Consensus 108 ~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccCccccchHHHHH-HHhHHHhcCCCCccccCcH
Confidence 88877776664444 6777777777777776664
No 52
>KOG3665|consensus
Probab=98.40 E-value=1.4e-07 Score=89.61 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=102.0
Q ss_pred cccccceEEcCCCcee--eecCCCcCcccccCccEEECCCCcccccc---cccCCCCccEEEccCCCCcccccc--cCCc
Q psy11652 25 SCILLMSAENEDNQIA--ELETANWSPEIQNKLTTLFIGENHIHQIE---NLNGFRSILWLNMDSNLLQTLDSL--PKTM 97 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l--~~~L 97 (325)
.-.+|++|++++...- ..+. .+ +.++|.|+.|.+.+-.+.... .+.++|+|..||++++++..+.++ +++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~-ki-g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPK-KI-GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHH-HH-hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccH
Confidence 3448889999875333 3333 55 556699999999887666543 567889999999999988888666 8889
Q ss_pred cEEEeecCcccch---hhhccCCCCCEEEccCCcceeec---------CCCCCCccEEEccCCccccc--hhhccCCCCc
Q psy11652 98 ETLSVANNYLVNY---LELNRMTSLKWIVLSNNYIKEFV---------IPNRKHIEKLDLSNNLISTI--NLNLNNTYYI 163 (325)
Q Consensus 98 ~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L 163 (325)
+.|.+.+-.+... ..+..+++|+.||+|.......+ ...+++|+.||++++.+... ...+...++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 9888888766654 67778899999999876543211 23588999999998887654 3334455666
Q ss_pred cEEEccC
Q psy11652 164 KDLILSY 170 (325)
Q Consensus 164 ~~L~l~~ 170 (325)
+.+...+
T Consensus 278 ~~i~~~~ 284 (699)
T KOG3665|consen 278 QQIAALD 284 (699)
T ss_pred hhhhhhh
Confidence 6655443
No 53
>KOG2120|consensus
Probab=98.34 E-value=3.4e-08 Score=81.64 Aligned_cols=169 Identities=17% Similarity=0.108 Sum_probs=84.3
Q ss_pred CCEEEccCCccee--ec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCC-cCcccc--cCccCCccccEEE
Q psy11652 119 LKWIVLSNNYIKE--FV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN-QISKLN--ANTFRNLNVFRLY 190 (325)
Q Consensus 119 L~~L~l~~~~~~~--~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~-~l~~~~--~~~~~~~~L~~L~ 190 (325)
|+.++++...++. +. ...+.+|+.|.+.++.+..- ...++...+|+.++++++ .++... ..+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5556665555541 11 23455566666666555543 445555566666666554 333211 1122235666666
Q ss_pred cccCCCcccCh-hhhhCccccCCEEEccCCCC----cCchHhhhCCCCCCEEeCCCCc-ccccccchhccCccCCEEEcc
Q psy11652 191 LKFNKISEIHD-FAFNGLNSTLEFLDLENNRL----TNINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLS 264 (325)
Q Consensus 191 l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~l----~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~ 264 (325)
+++|.+..... -.......+++.|+++|+.- ..+......|+++..|+++.+. ++.-....+-.++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 66665432111 12223333566666665421 1333344566677777766652 332222234455666777766
Q ss_pred CCCCc---ccCCCCCCCCCCEEECCC
Q psy11652 265 GNKLT---RIPDFIHNKRLSHLNLGY 287 (325)
Q Consensus 265 ~n~l~---~l~~~~~~~~L~~L~l~~ 287 (325)
.|..- .+-.+...|+|..|++.|
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecc
Confidence 66433 111255566677777665
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=6e-07 Score=53.11 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=28.7
Q ss_pred ccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652 256 VNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 256 ~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
++|++|++++|+++++|+ +..+++|+.|++++|+|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 357777888888777777 7778888888888887776654
No 55
>KOG4341|consensus
Probab=98.24 E-value=3.5e-08 Score=85.02 Aligned_cols=236 Identities=18% Similarity=0.074 Sum_probs=126.2
Q ss_pred cCccEEECCCCccc-ccc---cccCCCCccEEEccCCC-Cccc--ccc---cCCccEEEeecC-cccch---hhhccCCC
Q psy11652 53 NKLTTLFIGENHIH-QIE---NLNGFRSILWLNMDSNL-LQTL--DSL---PKTMETLSVANN-YLVNY---LELNRMTS 118 (325)
Q Consensus 53 ~~L~~L~l~~~~~~-~~~---~~~~~~~L~~L~l~~~~-~~~~--~~l---~~~L~~L~l~~~-~l~~~---~~~~~~~~ 118 (325)
-.|+.|+++++.=. .-+ .-.+|++++.|.+.+|. +++. .++ +++|+++++..| .++.. .....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 36788888887432 222 34568888888888775 2222 222 788888888775 33333 35567788
Q ss_pred CCEEEccCCcce---eec--CCCCCCccEEEccCCccccc-----------------------------hhhccCCCCcc
Q psy11652 119 LKWIVLSNNYIK---EFV--IPNRKHIEKLDLSNNLISTI-----------------------------NLNLNNTYYIK 164 (325)
Q Consensus 119 L~~L~l~~~~~~---~~~--~~~~~~L~~L~l~~~~~~~~-----------------------------~~~~~~~~~L~ 164 (325)
|++++++++.-. .+. ..+...++.+...+|.-.+. -..-.++..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 888888877432 222 23344444444444322111 11112344555
Q ss_pred EEEccCCc-Cccccc-CccC-CccccEEEcccCC-CcccChhhhhCccccCCEEEccCCCCc---CchHhhhCCCCCCEE
Q psy11652 165 DLILSYNQ-ISKLNA-NTFR-NLNVFRLYLKFNK-ISEIHDFAFNGLNSTLEFLDLENNRLT---NINQCFRNLKKLKYL 237 (325)
Q Consensus 165 ~L~l~~~~-l~~~~~-~~~~-~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L 237 (325)
.+..+++. +++..- .+.. ..+|+.+-+.++. ++...-..++...+.|+.+++.++... .+...-.+|+.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 55555442 222111 1112 2666777776663 444333344433336777777766543 233344567777777
Q ss_pred eCCCCcc-cccc----cchhccCccCCEEEccCCCCc--ccCC-CCCCCCCCEEECCCC
Q psy11652 238 YLHNNNI-EFIQ----NNTFEHLVNLKSISLSGNKLT--RIPD-FIHNKRLSHLNLGYN 288 (325)
Q Consensus 238 ~l~~~~l-~~~~----~~~l~~~~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n 288 (325)
.++++.. +... ...-.++..++.+.++++... ..-. ...|++|+.+++-++
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 7776642 2221 112233467777777777665 1112 667777777776554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=8.2e-06 Score=72.00 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=89.0
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCC-cccccc-cccCCCCccEEEccCC-CCcccccccCCccEEE
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGEN-HIHQIE-NLNGFRSILWLNMDSN-LLQTLDSLPKTMETLS 101 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~l~~~L~~L~ 101 (325)
.|.+++.|++++|.++.+|. + ++.|+.|.+++| .++.+| .+ .++|++|++++| .+ ..++++|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L---~sLP~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI---SGLPESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc---cccccccceEE
Confidence 57899999999999998884 4 568999999886 566666 33 358999999987 33 34588899999
Q ss_pred eecCcccchhhhccC-CCCCEEEccCCcce---eecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCc
Q psy11652 102 VANNYLVNYLELNRM-TSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172 (325)
Q Consensus 102 l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (325)
+.++....+ ..+ ++|+.|.+.++... .++..-+++|++|.+++|.....|..+ ..+|+.|.+..+.
T Consensus 119 L~~n~~~~L---~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 119 IKGSATDSI---KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIEQ 188 (426)
T ss_pred eCCCCCccc---ccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccc--cccCcEEEecccc
Confidence 876544332 333 35777776443211 122223468888888887765544333 2578888887653
No 57
>KOG1644|consensus
Probab=98.20 E-value=2.4e-06 Score=66.97 Aligned_cols=101 Identities=18% Similarity=0.160 Sum_probs=50.4
Q ss_pred cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc--hhhccCCCCccEEEc
Q psy11652 94 PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI--NLNLNNTYYIKDLIL 168 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l 168 (325)
......+++++|.+.....+.+++.|++|.+++|.++.+. ...+++|+.|.+.+|.+..+ -..+..++.|++|.+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4444555555555555555555555555555555555444 22345555555555555444 233455556666666
Q ss_pred cCCcCccccc----CccCCccccEEEcccC
Q psy11652 169 SYNQISKLNA----NTFRNLNVFRLYLKFN 194 (325)
Q Consensus 169 ~~~~l~~~~~----~~~~~~~L~~L~l~~~ 194 (325)
-+|.+++... .+...++|+.||+.+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5555543221 1122255555555543
No 58
>KOG4579|consensus
Probab=98.18 E-value=2.2e-07 Score=68.12 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=86.0
Q ss_pred ccccEEEcccCCCcccCh--hhhhCccccCCEEEccCCCCcCchHhhh-CCCCCCEEeCCCCcccccccchhccCccCCE
Q psy11652 184 LNVFRLYLKFNKISEIHD--FAFNGLNSTLEFLDLENNRLTNINQCFR-NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260 (325)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 260 (325)
..+..+++++|.+..+.. ..+.+.. .|+..++++|.+..+|..|. .++.+..+++.+|.++.+|.. +..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~-el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGY-ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCc-eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhh
Confidence 345567777776654321 2233333 67778899999888888664 456888999999999888775 888899999
Q ss_pred EEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccc
Q psy11652 261 ISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIV 300 (325)
Q Consensus 261 L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~ 300 (325)
++++.|.+...|. +..+.++..|+..+|.+..++....+.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s 145 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYS 145 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhcc
Confidence 9999999998887 666888888888889888888764433
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=7e-05 Score=66.28 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=68.4
Q ss_pred hccCCCCCEEEccCCcceeecCCCCCCccEEEccCCc-cccchhhccCCCCccEEEccCC-cCcccccCccCCccccEEE
Q psy11652 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNL-ISTINLNLNNTYYIKDLILSYN-QISKLNANTFRNLNVFRLY 190 (325)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~ 190 (325)
+..+++++.|++++|.++.+| .-..+|+.|.+++|. ++.+|..+ ..+|+.|.+.+| .+..+| ..|+.|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEE
Confidence 334466666666666666666 223456666665533 33334333 245677777666 333322 3456666
Q ss_pred cccCCCcccChhhhhCccccCCEEEccCCC-Cc--CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNR-LT--NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266 (325)
Q Consensus 191 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 266 (325)
+.++.... +..+|++|+.|.+.++. .. .++. .-.++|++|.+.+|.....+. .+. .+|+.|+++.+
T Consensus 119 L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~-~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPE-KLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcccCcc-ccc--ccCcEEEeccc
Confidence 65444322 23455566666664322 11 1111 112467777777665443322 222 46777777655
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1.4e-05 Score=47.18 Aligned_cols=38 Identities=45% Similarity=0.547 Sum_probs=18.8
Q ss_pred cCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccc
Q psy11652 210 TLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFI 247 (325)
Q Consensus 210 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~ 247 (325)
+|++|++++|.++.+|..++.+++|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555554455555555555555554443
No 61
>KOG4341|consensus
Probab=97.97 E-value=2.5e-07 Score=79.87 Aligned_cols=262 Identities=16% Similarity=0.045 Sum_probs=156.9
Q ss_pred hhcccccceEEcCCC-ceeeecCCCcCcccccCccEEECCCC-cccccc---cccCCCCccEEEccCCC-Cccc--ccc-
Q psy11652 23 QISCILLMSAENEDN-QIAELETANWSPEIQNKLTTLFIGEN-HIHQIE---NLNGFRSILWLNMDSNL-LQTL--DSL- 93 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~---~~~~~~~L~~L~l~~~~-~~~~--~~l- 93 (325)
...|++++.|.+-++ .|++.....+ .+.+++|++|++..| .+++.. ....|++|++|++++|. +.+- ..+
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 447778888777664 3444433345 566678888888775 455443 34568888888888774 3321 233
Q ss_pred --cCCccEEEeecCcccch----hhhccCCCCCEEEccCCc-ceeec----CCCCCCccEEEccCCccccc---hhhccC
Q psy11652 94 --PKTMETLSVANNYLVNY----LELNRMTSLKWIVLSNNY-IKEFV----IPNRKHIEKLDLSNNLISTI---NLNLNN 159 (325)
Q Consensus 94 --~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~~L~~L~l~~~~~~~~---~~~~~~ 159 (325)
...++.+.+.+|.-... ..-..+..+..+++..|. ++... ...+.+|+.+..+++.-.+. ..--.+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 45566666665533322 333444556666665553 33222 34677889998877764322 222456
Q ss_pred CCCccEEEccCCc-Cccc--ccCccCCccccEEEcccCCCcccC-hhhhh-CccccCCEEEccCCCC-cCc-----hHhh
Q psy11652 160 TYYIKDLILSYNQ-ISKL--NANTFRNLNVFRLYLKFNKISEIH-DFAFN-GLNSTLEFLDLENNRL-TNI-----NQCF 228 (325)
Q Consensus 160 ~~~L~~L~l~~~~-l~~~--~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~-~~~~~L~~L~l~~~~l-~~~-----~~~~ 228 (325)
+++|+.+.+.+|+ ++.. .....+...|+.+++.++...... -..++ .++ .++.+.++++.. ++- ...-
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~-~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP-RLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc-hhccCChhhhhhhhhhhhhhhhhcc
Confidence 7899999999885 3332 222223488999999888654322 12222 445 899999987743 222 1122
Q ss_pred hCCCCCCEEeCCCCccc-ccccchhccCccCCEEEccCCCCc---ccCC-CCCCCCCCEEECC
Q psy11652 229 RNLKKLKYLYLHNNNIE-FIQNNTFEHLVNLKSISLSGNKLT---RIPD-FIHNKRLSHLNLG 286 (325)
Q Consensus 229 ~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~---~l~~-~~~~~~L~~L~l~ 286 (325)
.....+..+-++++... +.....+..++.|+.+++.+++-. .+.+ ..++|++++..+.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 34566888888888544 444456677889999988876532 3333 5667777665443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.94 E-value=3.3e-05 Score=57.79 Aligned_cols=16 Identities=13% Similarity=0.139 Sum_probs=5.7
Q ss_pred hhccCCCCccEEEccC
Q psy11652 155 LNLNNTYYIKDLILSY 170 (325)
Q Consensus 155 ~~~~~~~~L~~L~l~~ 170 (325)
..|.++.+|+.+.+..
T Consensus 29 ~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTTT-TT-SEEEESS
T ss_pred hhcccccccccccccc
Confidence 3344444444444433
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.84 E-value=0.00012 Score=54.73 Aligned_cols=119 Identities=27% Similarity=0.442 Sum_probs=56.7
Q ss_pred hhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCC
Q psy11652 155 LNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLK 232 (325)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~ 232 (325)
..|.++.+|+.+.+.. .+..+....+.. ++++.+.+..+ +..+....|..++ +++.+.+.. .+..++. .|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-ccccccccc-cccccccccccccc
Confidence 4566666777777664 455666666655 47777777663 6666666666666 677777754 3443443 455677
Q ss_pred CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCC
Q psy11652 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRL 280 (325)
Q Consensus 233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L 280 (325)
+++.+.+..+ +..+....+.++ .++.+.+.. .+..++. |.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777654 555555566665 677776654 4445554 6665555
No 64
>KOG3665|consensus
Probab=97.73 E-value=1.8e-05 Score=75.40 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=85.1
Q ss_pred hhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc----ccc-cCC
Q psy11652 22 VQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL----DSL-PKT 96 (325)
Q Consensus 22 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~l-~~~ 96 (325)
.+.-+|.|++|.+++..+..-.-.++ +.-+|+|..||+++++++.+..++.+++|+.|.+.+-.+... +-| +++
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~l-c~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQL-CASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHH-hhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 46789999999999987774443334 444599999999999999888888999999999988777654 334 999
Q ss_pred ccEEEeecCcccch--------hhhccCCCCCEEEccCCcce
Q psy11652 97 METLSVANNYLVNY--------LELNRMTSLKWIVLSNNYIK 130 (325)
Q Consensus 97 L~~L~l~~~~l~~~--------~~~~~~~~L~~L~l~~~~~~ 130 (325)
|+.||++....... ..-..+|.|+.|+.+++.+.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99999987533222 44556899999999988766
No 65
>KOG2123|consensus
Probab=97.58 E-value=3.2e-06 Score=69.55 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=50.4
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc-----cCCccE
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL-----PKTMET 99 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l-----~~~L~~ 99 (325)
++.+++.|++.++.++++.. ++-++.|+.|.|+=|+|+++..+..|.+|++|+|..|.+.+++++ +++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIsi----c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI----CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHHH----HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34466677777777776665 443477777777777777666666777777777777766666333 566666
Q ss_pred EEeecC
Q psy11652 100 LSVANN 105 (325)
Q Consensus 100 L~l~~~ 105 (325)
|.|..|
T Consensus 93 LWL~EN 98 (388)
T KOG2123|consen 93 LWLDEN 98 (388)
T ss_pred HhhccC
Confidence 666554
No 66
>KOG2123|consensus
Probab=97.57 E-value=2.7e-06 Score=69.95 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=75.3
Q ss_pred cCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecCcccch---hhhccCCCCCEEEccCC
Q psy11652 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNY---LELNRMTSLKWIVLSNN 127 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~ 127 (325)
.+.++|++.+|.+.++.....++.|+.|.|+-|++..+..| +.+|++|+|..|.+..+ ..+.++|+|+.|.|..|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 57788999999999887777899999999999999888777 99999999999988888 78889999999999877
Q ss_pred ccee-ec-------CCCCCCccEEE
Q psy11652 128 YIKE-FV-------IPNRKHIEKLD 144 (325)
Q Consensus 128 ~~~~-~~-------~~~~~~L~~L~ 144 (325)
.-.. .+ ...+++|++||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 5431 11 33677777775
No 67
>KOG2739|consensus
Probab=97.40 E-value=9.3e-05 Score=60.56 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=54.2
Q ss_pred cCccEEECCCCcccccccccCCCCccEEEccCCCCccc---ccc---cCCccEEEeecCcccch---hhhccCCCCCEEE
Q psy11652 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL---DSL---PKTMETLSVANNYLVNY---LELNRMTSLKWIV 123 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l---~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~ 123 (325)
..|+.|++.++.++++..|..+++||.|.++.|..... ..+ +++|+++++++|.+..+ ..+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 45566666666555555555666666666666633322 111 56666777666655544 5555666666666
Q ss_pred ccCCcceeec------CCCCCCccEEEccC
Q psy11652 124 LSNNYIKEFV------IPNRKHIEKLDLSN 147 (325)
Q Consensus 124 l~~~~~~~~~------~~~~~~L~~L~l~~ 147 (325)
+..|..+... +..+++|++|+-..
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhccccccc
Confidence 6666555322 33556666665433
No 68
>KOG2739|consensus
Probab=97.31 E-value=9.6e-05 Score=60.47 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=37.4
Q ss_pred CCCccEEEccCCCCcccccc--cCCccEEEeecCcccch----hhhccCCCCCEEEccCCcceeec----CCCCCCccEE
Q psy11652 74 FRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNY----LELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKL 143 (325)
Q Consensus 74 ~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L 143 (325)
+..|+.+++.+..++.+..| +++|+.|.++.|..... .....+|+|+++++++|++..+. ...+.+|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34445555555555544333 55555555555522211 23333355555555555554222 3344455555
Q ss_pred EccCCcccc
Q psy11652 144 DLSNNLIST 152 (325)
Q Consensus 144 ~l~~~~~~~ 152 (325)
++.+|..+.
T Consensus 122 dl~n~~~~~ 130 (260)
T KOG2739|consen 122 DLFNCSVTN 130 (260)
T ss_pred hcccCCccc
Confidence 555554433
No 69
>KOG1947|consensus
Probab=96.44 E-value=0.00085 Score=62.03 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=14.5
Q ss_pred CCEEEccCCCCcccCC---CCC-CCCCCEEECCCC
Q psy11652 258 LKSISLSGNKLTRIPD---FIH-NKRLSHLNLGYN 288 (325)
Q Consensus 258 L~~L~l~~n~l~~l~~---~~~-~~~L~~L~l~~n 288 (325)
++.|++..+....... ... +..+..+++.++
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~ 437 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGC 437 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCc
Confidence 5666666555432222 111 445555555554
No 70
>KOG1947|consensus
Probab=96.19 E-value=0.00096 Score=61.67 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=57.4
Q ss_pred cCccEEECCCC-cccc--cc-cccCCCCccEEEccCC-CCccc-----ccc---cCCccEEEeecCc-ccch--hh-hcc
Q psy11652 53 NKLTTLFIGEN-HIHQ--IE-NLNGFRSILWLNMDSN-LLQTL-----DSL---PKTMETLSVANNY-LVNY--LE-LNR 115 (325)
Q Consensus 53 ~~L~~L~l~~~-~~~~--~~-~~~~~~~L~~L~l~~~-~~~~~-----~~l---~~~L~~L~l~~~~-l~~~--~~-~~~ 115 (325)
+.|+.|.+.++ .+.. +. ....++.|+.|+++++ ..... ..+ +++|+.++++++. ++.. .. ...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 56666666655 3333 21 4455666666666652 11111 011 5666666666665 3333 22 223
Q ss_pred CCCCCEEEccCCc-ceeec----CCCCCCccEEEccCCcccc---chhhccCCCCccEEEc
Q psy11652 116 MTSLKWIVLSNNY-IKEFV----IPNRKHIEKLDLSNNLIST---INLNLNNTYYIKDLIL 168 (325)
Q Consensus 116 ~~~L~~L~l~~~~-~~~~~----~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l 168 (325)
+++|+.|.+..|. ++... ...++.|++|+++++.... +.....++++++.+.+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 6667776665554 34211 3355567777776655421 1222344555555443
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.48 E-value=0.0095 Score=27.11 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=7.1
Q ss_pred CCCEEECCCCcCcccc
Q psy11652 279 RLSHLNLGYNFLNELI 294 (325)
Q Consensus 279 ~L~~L~l~~n~i~~~~ 294 (325)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.018 Score=28.20 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=12.5
Q ss_pred ccceEEcCCCceeeecC
Q psy11652 28 LLMSAENEDNQIAELET 44 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~ 44 (325)
+|++|++++|.++.+|.
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 46777777777777777
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.89 E-value=0.016 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=13.8
Q ss_pred CccEEECCCCcccccc-cccC
Q psy11652 54 KLTTLFIGENHIHQIE-NLNG 73 (325)
Q Consensus 54 ~L~~L~l~~~~~~~~~-~~~~ 73 (325)
+|++|++++|.++.+| .|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 4677888888777776 5443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.87 E-value=0.049 Score=27.75 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=15.4
Q ss_pred CCCCEEECCCCcCcccccccc
Q psy11652 278 KRLSHLNLGYNFLNELILESS 298 (325)
Q Consensus 278 ~~L~~L~l~~n~i~~~~~~~~ 298 (325)
++|+.|++++|.|+.+|+..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 567788888888888776643
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.87 E-value=0.049 Score=27.75 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=15.4
Q ss_pred CCCCEEECCCCcCcccccccc
Q psy11652 278 KRLSHLNLGYNFLNELILESS 298 (325)
Q Consensus 278 ~~L~~L~l~~n~i~~~~~~~~ 298 (325)
++|+.|++++|.|+.+|+..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 567788888888888776643
No 76
>KOG3864|consensus
Probab=93.27 E-value=0.019 Score=45.51 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=53.2
Q ss_pred CccEEECCCCcccccc--cccCCCCccEEEccCCCCccc---ccc---cCCccEEEeecCc-ccch--hhhccCCCCCEE
Q psy11652 54 KLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL---DSL---PKTMETLSVANNY-LVNY--LELNRMTSLKWI 122 (325)
Q Consensus 54 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~---~~l---~~~L~~L~l~~~~-l~~~--~~~~~~~~L~~L 122 (325)
.++.++-+++.|.... -+.+++.++.|.+.+|.--+. +.+ .++|+.|++++|. ++.. ..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 6788888888877665 778888888888888753332 233 7889999998774 4444 677778888877
Q ss_pred EccC
Q psy11652 123 VLSN 126 (325)
Q Consensus 123 ~l~~ 126 (325)
.+++
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 77
>KOG4308|consensus
Probab=93.02 E-value=0.0018 Score=59.36 Aligned_cols=38 Identities=32% Similarity=0.331 Sum_probs=17.4
Q ss_pred CCCCEEeCCCCccccc----ccchhccCccCCEEEccCCCCc
Q psy11652 232 KKLKYLYLHNNNIEFI----QNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 232 ~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
..++.++++.|.++.. ....+..++.++.+.+.+|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3445555555555431 1122333445555555555544
No 78
>KOG4308|consensus
Probab=92.98 E-value=0.0012 Score=60.61 Aligned_cols=188 Identities=22% Similarity=0.196 Sum_probs=122.7
Q ss_pred ccEEECCCCcccccc------cccCCCCccEEEccCCCCccc------ccc--c-CCccEEEeecCcccch------hhh
Q psy11652 55 LTTLFIGENHIHQIE------NLNGFRSILWLNMDSNLLQTL------DSL--P-KTMETLSVANNYLVNY------LEL 113 (325)
Q Consensus 55 L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~------~~l--~-~~L~~L~l~~~~l~~~------~~~ 113 (325)
+..|.+.+|.+.+-+ ++.....|..+++++|.+.+. ..+ + ..++.|.+..|.++.. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 777888888777544 677788888888988887754 222 3 5677777777766655 556
Q ss_pred ccCCCCCEEEccCCccee-----ec--C----CCCCCccEEEccCCccccc-----hhhccCCCC-ccEEEccCCcCccc
Q psy11652 114 NRMTSLKWIVLSNNYIKE-----FV--I----PNRKHIEKLDLSNNLISTI-----NLNLNNTYY-IKDLILSYNQISKL 176 (325)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~-----~~--~----~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~l~~~~l~~~ 176 (325)
.....++.++++.|.+.. ++ . ....++++|.+.+|.++.. ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667788888888887641 11 1 2467888888888887643 233444555 66688888876632
Q ss_pred -----ccCccCC-ccccEEEcccCCCcccChh----hhhCccccCCEEEccCCCCcCchH-----hhhCCCCCCEEeCCC
Q psy11652 177 -----NANTFRN-LNVFRLYLKFNKISEIHDF----AFNGLNSTLEFLDLENNRLTNINQ-----CFRNLKKLKYLYLHN 241 (325)
Q Consensus 177 -----~~~~~~~-~~L~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~~~L~~L~l~~ 241 (325)
.+..... ..++.++++.|.++..... .+...+ .++++.++.|.+..... .......+..+.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 2233333 5778899999988765443 334455 78888888888773322 333444555566655
Q ss_pred Cc
Q psy11652 242 NN 243 (325)
Q Consensus 242 ~~ 243 (325)
+.
T Consensus 328 ~~ 329 (478)
T KOG4308|consen 328 TG 329 (478)
T ss_pred cC
Confidence 54
No 79
>KOG3864|consensus
Probab=91.44 E-value=0.075 Score=42.29 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=40.2
Q ss_pred ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCC-c--CchHhhhCCCCCCEEeCCCC-cccccccchhccCccCC
Q psy11652 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL-T--NINQCFRNLKKLKYLYLHNN-NIEFIQNNTFEHLVNLK 259 (325)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-~--~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~ 259 (325)
..++.++.+++.|....-..+..++ .++.|.+.++.- . .+...-+..++|+.|++++| +|++.....+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~-~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLR-SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccc-hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4555566666655554444555555 555555555432 1 11111123355666666655 45544444455555555
Q ss_pred EEEccC
Q psy11652 260 SISLSG 265 (325)
Q Consensus 260 ~L~l~~ 265 (325)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555543
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.13 E-value=0.37 Score=23.88 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=10.7
Q ss_pred CCCCCEEECCCCcCccc
Q psy11652 277 NKRLSHLNLGYNFLNEL 293 (325)
Q Consensus 277 ~~~L~~L~l~~n~i~~~ 293 (325)
+++|++|++++|+|+..
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 46788888888887654
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.56 E-value=0.6 Score=23.78 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=13.4
Q ss_pred CCCCEEECCCCcCccccc
Q psy11652 278 KRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 278 ~~L~~L~l~~n~i~~~~~ 295 (325)
++|+.|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467777888888877775
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.79 E-value=2.1 Score=21.85 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=11.7
Q ss_pred CCCCEEECCCCcCcccc
Q psy11652 278 KRLSHLNLGYNFLNELI 294 (325)
Q Consensus 278 ~~L~~L~l~~n~i~~~~ 294 (325)
++|+.|+++.|.|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 46777777777776553
No 83
>KOG0473|consensus
Probab=75.98 E-value=0.081 Score=43.12 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=33.5
Q ss_pred CCCCccEEEccCCCCccc-ccc--cCCccEEEeecCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEcc
Q psy11652 73 GFRSILWLNMDSNLLQTL-DSL--PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLS 146 (325)
Q Consensus 73 ~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~ 146 (325)
.+...+.||++.+++... ..| +..+..|+++.|.+.-. ..+.+...++.+.+..|.....| ....+.+++++..
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 333444444444443333 233 44444444444443333 34444444444444444444444 3344444444444
Q ss_pred CCc
Q psy11652 147 NNL 149 (325)
Q Consensus 147 ~~~ 149 (325)
++.
T Consensus 120 ~~~ 122 (326)
T KOG0473|consen 120 KTE 122 (326)
T ss_pred cCc
Confidence 444
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.73 E-value=3.2 Score=21.46 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=11.7
Q ss_pred CCCCEEECCCCcCcc
Q psy11652 278 KRLSHLNLGYNFLNE 292 (325)
Q Consensus 278 ~~L~~L~l~~n~i~~ 292 (325)
++|++|++++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578888888888764
No 85
>KOG0473|consensus
Probab=70.23 E-value=0.11 Score=42.31 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEE
Q psy11652 182 RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI 261 (325)
Q Consensus 182 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 261 (325)
.....+.||++.|.+.... ..|+-+. .+..++++.|.+..+|..+.....++.+....|+....|. .++..+.++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~-~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLG-KNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHhhc-cchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchh
Confidence 3466667777776654432 2344444 5666777777776677666666666666666666655443 56666777777
Q ss_pred EccCCCCc
Q psy11652 262 SLSGNKLT 269 (325)
Q Consensus 262 ~l~~n~l~ 269 (325)
++-++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77666654
No 86
>KOG3763|consensus
Probab=68.75 E-value=3.3 Score=38.37 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=4.8
Q ss_pred cCCccEEEeecC
Q psy11652 94 PKTMETLSVANN 105 (325)
Q Consensus 94 ~~~L~~L~l~~~ 105 (325)
.|+|..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 334444444433
No 87
>KOG3763|consensus
Probab=57.60 E-value=5.9 Score=36.78 Aligned_cols=64 Identities=25% Similarity=0.264 Sum_probs=41.8
Q ss_pred hCCCCCCEEeCCCCccccccc--chhccCccCCEEEccCC--CCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652 229 RNLKKLKYLYLHNNNIEFIQN--NTFEHLVNLKSISLSGN--KLTRIPD--FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 229 ~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n--~l~~l~~--~~~~~~L~~L~l~~n~i~~ 292 (325)
.+.+.+..+++++|++-.+.. ..-...|+|..|+|++| .+..-+. --....|++|-+.||++.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 455777888888887654322 12223588999999998 5553333 1222458889999998864
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=56.03 E-value=8.1 Score=19.35 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=7.0
Q ss_pred CCCccEEEccCC
Q psy11652 74 FRSILWLNMDSN 85 (325)
Q Consensus 74 ~~~L~~L~l~~~ 85 (325)
|++|++|++++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 455666666655
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.33 E-value=17 Score=40.72 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=27.6
Q ss_pred eCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652 238 YLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 238 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
+|++|+|+.++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47788888888888888889999999998877
No 90
>KOG4242|consensus
Probab=37.05 E-value=1.3e+02 Score=27.83 Aligned_cols=98 Identities=14% Similarity=-0.006 Sum_probs=46.2
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc----cc-cCCCCccEEEccCCCCccc-cc---c---cC
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE----NL-NGFRSILWLNMDSNLLQTL-DS---L---PK 95 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~-~~~~~L~~L~l~~~~~~~~-~~---l---~~ 95 (325)
-+++++++.+.+.+-....+.+...+ +.++.|..++-. .. +.=..+.+++++.|...+. .. + ..
T Consensus 166 r~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred hhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 46778888777763222122011112 555555544321 11 1123466777777765544 11 1 34
Q ss_pred CccEEEeecCcccch-----hhhccCCCCCEEEccCCcc
Q psy11652 96 TMETLSVANNYLVNY-----LELNRMTSLKWIVLSNNYI 129 (325)
Q Consensus 96 ~L~~L~l~~~~l~~~-----~~~~~~~~L~~L~l~~~~~ 129 (325)
.+++++.+...+..- ...+..+.+...+++.|..
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 455555554433222 2333445666666665543
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=32.36 E-value=81 Score=18.10 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=4.5
Q ss_pred cCCccEEEe
Q psy11652 94 PKTMETLSV 102 (325)
Q Consensus 94 ~~~L~~L~l 102 (325)
+++|++|.+
T Consensus 33 P~sl~~L~f 41 (44)
T PF05725_consen 33 PNSLKSLSF 41 (44)
T ss_pred CCCceEEEe
Confidence 555555544
Done!