Query psy11652
Match_columns 325
No_of_seqs 178 out of 3330
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 15:30:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 100.0 4E-32 1.4E-36 249.0 26.3 288 27-317 32-335 (477)
2 4fmz_A Internalin; leucine ric 100.0 2.9E-31 1E-35 233.4 25.3 260 25-295 42-328 (347)
3 3v47_A TOLL-like receptor 5B a 100.0 8.6E-32 2.9E-36 245.3 22.6 288 27-317 30-410 (455)
4 4fmz_A Internalin; leucine ric 100.0 4.4E-31 1.5E-35 232.3 26.3 277 34-319 29-328 (347)
5 2id5_A Lingo-1, leucine rich r 100.0 2.1E-31 7.1E-36 244.3 22.8 291 24-320 7-314 (477)
6 3t6q_A CD180 antigen; protein- 100.0 6.3E-31 2.2E-35 248.0 26.3 286 28-316 34-390 (606)
7 3o6n_A APL1; leucine-rich repe 100.0 9.3E-31 3.2E-35 233.9 23.2 279 24-315 42-352 (390)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-30 8.8E-35 243.8 26.3 181 139-320 351-539 (606)
9 1xku_A Decorin; proteoglycan, 100.0 7.2E-30 2.5E-34 223.0 26.2 274 28-312 32-329 (330)
10 3v47_A TOLL-like receptor 5B a 100.0 1.9E-30 6.5E-35 236.5 23.2 272 23-297 50-414 (455)
11 3t6q_A CD180 antigen; protein- 100.0 5.9E-30 2E-34 241.3 27.0 286 28-317 255-562 (606)
12 4eco_A Uncharacterized protein 100.0 5.1E-31 1.7E-35 249.4 17.9 299 17-321 65-507 (636)
13 3o6n_A APL1; leucine-rich repe 100.0 6.6E-30 2.3E-34 228.4 23.7 258 53-318 45-334 (390)
14 1o6v_A Internalin A; bacterial 100.0 9.8E-30 3.4E-34 232.4 25.3 283 24-319 65-392 (466)
15 4eco_A Uncharacterized protein 100.0 1.4E-30 4.7E-35 246.5 19.9 269 23-295 202-530 (636)
16 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-30 1.7E-34 224.3 21.9 273 28-312 34-330 (332)
17 3rgz_A Protein brassinosteroid 100.0 4.4E-30 1.5E-34 248.2 23.4 245 74-319 393-722 (768)
18 1o6v_A Internalin A; bacterial 100.0 3.7E-29 1.3E-33 228.6 27.4 260 24-295 43-326 (466)
19 3oja_B Anopheles plasmodium-re 100.0 7.4E-30 2.5E-34 240.0 23.2 278 24-314 48-357 (597)
20 3rgz_A Protein brassinosteroid 100.0 6.4E-30 2.2E-34 247.0 23.3 294 25-321 292-700 (768)
21 4ecn_A Leucine-rich repeat pro 100.0 7.1E-30 2.4E-34 246.6 23.0 171 23-196 444-656 (876)
22 3vq2_A TLR4, TOLL-like recepto 100.0 9.8E-30 3.4E-34 239.8 23.1 201 116-317 349-560 (606)
23 1xku_A Decorin; proteoglycan, 100.0 2.4E-29 8.3E-34 219.7 23.0 258 27-289 52-330 (330)
24 4ecn_A Leucine-rich repeat pro 100.0 2.8E-29 9.5E-34 242.5 24.5 287 24-317 512-842 (876)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-29 5.2E-34 236.4 21.8 102 27-130 52-159 (562)
26 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-29 5.3E-34 234.3 21.2 103 23-129 41-150 (520)
27 2z63_A TOLL-like receptor 4, v 100.0 4.9E-29 1.7E-33 233.3 24.7 160 156-316 368-532 (570)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-28 5E-33 234.8 27.4 293 23-318 268-625 (680)
29 3oja_B Anopheles plasmodium-re 100.0 5.7E-29 1.9E-33 234.0 24.1 258 53-318 51-340 (597)
30 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-29 7.7E-34 234.6 20.9 266 28-296 27-428 (549)
31 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-29 1.3E-33 218.7 20.9 257 27-289 54-331 (332)
32 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-28 3.9E-33 228.5 25.3 102 27-130 21-128 (520)
33 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-29 2.4E-33 231.3 22.4 107 23-131 46-162 (549)
34 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-28 1.7E-32 231.1 27.9 290 27-319 248-601 (680)
35 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-28 1.2E-32 227.1 24.9 288 22-316 71-511 (562)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-27 4.7E-32 217.1 24.9 205 25-246 40-247 (457)
37 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-28 1.1E-32 237.4 20.8 267 26-295 23-379 (844)
38 2z80_A TOLL-like receptor 2, v 100.0 4.1E-28 1.4E-32 213.9 19.1 268 23-296 27-319 (353)
39 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-28 2.1E-32 235.4 20.6 286 24-319 45-418 (844)
40 2z63_A TOLL-like receptor 4, v 100.0 8.6E-28 2.9E-32 224.9 19.4 286 27-317 28-411 (570)
41 4g8a_A TOLL-like receptor 4; l 100.0 9E-27 3.1E-31 220.4 25.6 135 184-319 445-584 (635)
42 3bz5_A Internalin-J, INLJ; leu 100.0 4E-26 1.4E-30 207.5 26.7 254 24-294 61-355 (457)
43 3zyj_A Leucine-rich repeat-con 100.0 8.8E-27 3E-31 211.3 21.4 239 24-269 39-292 (440)
44 2z66_A Variable lymphocyte rec 100.0 6.4E-27 2.2E-31 202.1 19.4 236 29-293 9-263 (306)
45 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-27 6.3E-32 206.1 15.4 245 21-289 38-302 (313)
46 3zyi_A Leucine-rich repeat-con 99.9 1.9E-26 6.6E-31 209.8 22.2 239 24-269 50-303 (452)
47 1ogq_A PGIP-2, polygalacturona 99.9 2E-27 6.9E-32 205.9 14.8 235 75-313 50-302 (313)
48 1jl5_A Outer protein YOPM; leu 99.9 4.6E-26 1.6E-30 206.9 23.8 244 27-295 111-354 (454)
49 4g8a_A TOLL-like receptor 4; l 99.9 8.4E-26 2.9E-30 213.7 24.1 289 28-319 53-559 (635)
50 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-25 4.4E-30 210.3 24.5 239 26-294 39-277 (622)
51 2z66_A Variable lymphocyte rec 99.9 3.5E-26 1.2E-30 197.5 18.8 240 78-318 10-264 (306)
52 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 4.2E-31 210.7 16.7 266 25-317 32-312 (454)
53 3zyi_A Leucine-rich repeat-con 99.9 1.2E-25 4.1E-30 204.5 23.1 236 53-293 54-305 (452)
54 3zyj_A Leucine-rich repeat-con 99.9 1.1E-25 3.8E-30 204.1 22.4 235 53-292 43-293 (440)
55 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-26 9.2E-31 196.2 16.6 211 29-245 13-238 (285)
56 2z80_A TOLL-like receptor 2, v 99.9 2.5E-26 8.6E-31 202.4 16.0 241 27-270 52-315 (353)
57 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-25 1.4E-29 188.8 21.1 215 78-293 14-240 (285)
58 3g06_A SSPH2 (leucine-rich rep 99.9 5.2E-25 1.8E-29 206.2 23.0 242 27-297 61-303 (622)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-27 8.5E-32 205.7 5.4 232 29-291 12-250 (317)
60 3o53_A Protein LRIM1, AGAP0063 99.9 5E-26 1.7E-30 197.5 13.4 212 94-315 33-250 (317)
61 4fcg_A Uncharacterized protein 99.9 1.8E-25 6.3E-30 194.7 17.0 229 27-271 81-316 (328)
62 4fcg_A Uncharacterized protein 99.9 5.5E-25 1.9E-29 191.7 17.1 231 53-297 81-320 (328)
63 3oja_A Leucine-rich immune mol 99.9 8.3E-25 2.8E-29 200.5 10.6 35 54-88 35-71 (487)
64 1wwl_A Monocyte differentiatio 99.9 1.2E-25 4.2E-30 194.6 4.4 195 94-292 94-310 (312)
65 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-25 5.4E-30 204.2 5.2 265 25-291 54-383 (461)
66 2z62_A TOLL-like receptor 4, v 99.9 4.9E-23 1.7E-27 175.1 19.1 214 80-295 12-241 (276)
67 3oja_A Leucine-rich immune mol 99.9 2.2E-23 7.6E-28 191.0 18.0 213 72-291 31-250 (487)
68 1z7x_W Ribonuclease inhibitor; 99.9 7.3E-25 2.5E-29 199.8 7.5 266 28-296 86-416 (461)
69 2xwt_C Thyrotropin receptor; s 99.9 1.7E-23 5.8E-28 174.2 14.6 209 25-242 9-236 (239)
70 2o6q_A Variable lymphocyte rec 99.9 1.2E-22 4.2E-27 172.1 20.0 202 9-221 3-217 (270)
71 1wwl_A Monocyte differentiatio 99.9 1.5E-24 5.1E-29 187.8 7.4 240 71-316 39-310 (312)
72 2o6q_A Variable lymphocyte rec 99.9 1.7E-22 5.8E-27 171.2 19.9 199 95-295 16-222 (270)
73 1h6u_A Internalin H; cell adhe 99.9 6.9E-23 2.4E-27 176.9 17.6 212 54-273 20-234 (308)
74 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.9E-27 172.4 19.4 189 53-244 10-207 (290)
75 2z62_A TOLL-like receptor 4, v 99.9 1.9E-22 6.5E-27 171.5 18.0 213 30-269 10-237 (276)
76 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.4E-28 177.8 11.3 196 94-295 40-239 (272)
77 1h6u_A Internalin H; cell adhe 99.9 7.7E-23 2.6E-27 176.6 15.8 215 25-249 17-234 (308)
78 1p9a_G Platelet glycoprotein I 99.9 3E-22 1E-26 171.4 18.9 197 70-268 5-207 (290)
79 2xwt_C Thyrotropin receptor; s 99.9 1.1E-22 3.7E-27 169.3 14.4 200 87-289 23-237 (239)
80 3rfs_A Internalin B, repeat mo 99.9 9.6E-23 3.3E-27 172.9 12.2 220 26-277 18-245 (272)
81 3m19_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 160.6 17.5 180 117-297 14-198 (251)
82 4glp_A Monocyte differentiatio 99.9 9E-22 3.1E-26 170.1 12.1 213 76-292 65-308 (310)
83 4ay9_X Follicle-stimulating ho 99.9 8E-21 2.7E-25 167.0 17.8 231 25-266 8-256 (350)
84 3m19_A Variable lymphocyte rec 99.9 9E-21 3.1E-25 158.9 16.6 177 16-197 2-192 (251)
85 3goz_A Leucine-rich repeat-con 99.9 5.8E-22 2E-26 175.1 8.0 211 31-243 2-264 (362)
86 2ca6_A RAN GTPase-activating p 99.9 8.8E-23 3E-27 181.9 2.4 223 53-294 32-319 (386)
87 3goz_A Leucine-rich repeat-con 99.8 7.4E-21 2.5E-25 168.0 13.2 216 28-246 23-298 (362)
88 1h6t_A Internalin B; cell adhe 99.8 2.1E-20 7.3E-25 159.9 13.2 187 78-272 27-216 (291)
89 4ay9_X Follicle-stimulating ho 99.8 2.9E-20 1E-24 163.3 14.1 226 56-288 12-256 (350)
90 4glp_A Monocyte differentiatio 99.8 3.2E-20 1.1E-24 160.4 13.7 218 94-316 63-308 (310)
91 2ast_B S-phase kinase-associat 99.8 9E-21 3.1E-25 165.6 8.5 197 18-219 36-257 (336)
92 2ast_B S-phase kinase-associat 99.8 1.1E-20 3.8E-25 165.0 8.7 242 54-299 48-314 (336)
93 2ca6_A RAN GTPase-activating p 99.8 9.3E-21 3.2E-25 168.8 7.5 222 24-248 29-319 (386)
94 1h6t_A Internalin B; cell adhe 99.8 7.6E-20 2.6E-24 156.5 12.3 192 25-247 22-215 (291)
95 1m9s_A Internalin B; cell inva 99.8 7.9E-20 2.7E-24 170.9 10.7 189 76-272 22-213 (605)
96 3cvr_A Invasion plasmid antige 99.8 4.5E-19 1.5E-23 164.2 14.9 179 76-295 60-247 (571)
97 3cvr_A Invasion plasmid antige 99.8 1.9E-18 6.4E-23 160.1 17.3 195 26-254 58-252 (571)
98 1m9s_A Internalin B; cell inva 99.8 2.9E-19 1E-23 167.1 12.1 190 24-222 18-210 (605)
99 3ogk_B Coronatine-insensitive 99.8 5.3E-20 1.8E-24 172.8 6.5 66 24-90 161-235 (592)
100 2o6s_A Variable lymphocyte rec 99.8 1.4E-18 4.7E-23 141.3 12.0 170 120-295 10-182 (208)
101 2xot_A Amphoterin-induced prot 99.8 2E-18 6.9E-23 152.2 12.5 172 120-292 21-203 (361)
102 2v9t_B SLIT homolog 2 protein 99.8 6E-18 2.1E-22 138.7 14.5 149 141-292 14-166 (220)
103 3ogk_B Coronatine-insensitive 99.8 6.7E-19 2.3E-23 165.3 8.4 270 23-295 188-530 (592)
104 3e6j_A Variable lymphocyte rec 99.8 1.5E-17 5.2E-22 137.2 15.2 148 120-268 22-171 (229)
105 4ezg_A Putative uncharacterize 99.8 5.6E-18 1.9E-22 136.5 12.2 151 137-292 43-195 (197)
106 1xeu_A Internalin C; cellular 99.8 2.1E-18 7.3E-23 145.3 9.6 168 24-198 16-186 (263)
107 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.7E-22 147.6 13.9 175 140-317 20-204 (361)
108 1xeu_A Internalin C; cellular 99.7 2.2E-18 7.6E-23 145.2 8.7 169 95-272 19-188 (263)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 3.6E-17 1.2E-21 134.0 15.7 149 141-292 14-167 (220)
110 2p1m_B Transport inhibitor res 99.7 6.4E-19 2.2E-23 165.5 5.6 107 184-292 372-495 (594)
111 3e6j_A Variable lymphocyte rec 99.7 6.6E-17 2.3E-21 133.3 15.8 154 138-295 19-176 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 4.2E-17 1.4E-21 133.6 14.2 149 120-269 14-166 (220)
113 2v9t_B SLIT homolog 2 protein 99.7 4E-17 1.4E-21 133.7 14.1 149 120-269 14-165 (220)
114 2o6s_A Variable lymphocyte rec 99.7 1E-16 3.4E-21 130.2 15.8 153 140-295 9-165 (208)
115 4ezg_A Putative uncharacterize 99.7 3.2E-17 1.1E-21 132.0 12.7 148 117-269 44-194 (197)
116 4fdw_A Leucine rich hypothetic 99.7 5.7E-16 1.9E-20 138.0 21.2 240 50-300 110-367 (401)
117 2p1m_B Transport inhibitor res 99.7 1.3E-18 4.4E-23 163.4 3.4 287 24-314 102-493 (594)
118 3sb4_A Hypothetical leucine ri 99.7 7.7E-17 2.6E-21 140.3 11.5 250 26-285 48-328 (329)
119 3sb4_A Hypothetical leucine ri 99.7 7.3E-17 2.5E-21 140.4 10.6 118 184-305 202-324 (329)
120 4fdw_A Leucine rich hypothetic 99.7 1.9E-15 6.5E-20 134.6 19.9 254 25-294 111-386 (401)
121 2ell_A Acidic leucine-rich nuc 99.7 1.1E-15 3.7E-20 119.8 12.1 135 136-272 22-163 (168)
122 1dce_A Protein (RAB geranylger 99.6 2.1E-18 7.2E-23 160.3 -4.5 180 114-298 346-553 (567)
123 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.3E-20 119.4 10.8 136 158-296 21-165 (168)
124 1dce_A Protein (RAB geranylger 99.6 5.4E-18 1.8E-22 157.6 -3.4 195 53-263 349-567 (567)
125 1w8a_A SLIT protein; signaling 99.6 6.8E-15 2.3E-19 117.8 12.8 127 164-293 11-141 (192)
126 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 114.8 13.3 132 163-297 9-143 (177)
127 2je0_A Acidic leucine-rich nuc 99.6 6.6E-15 2.3E-19 112.8 11.3 127 136-264 15-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 1.4E-14 4.8E-19 116.0 13.4 125 164-292 13-140 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.6 6.4E-15 2.2E-19 116.2 8.2 132 157-292 15-154 (176)
130 2je0_A Acidic leucine-rich nuc 99.6 1.6E-14 5.5E-19 110.7 9.7 124 160-286 16-148 (149)
131 1w8a_A SLIT protein; signaling 99.6 2.6E-14 8.9E-19 114.4 11.1 107 162-269 30-139 (192)
132 2wfh_A SLIT homolog 2 protein 99.5 6.9E-14 2.4E-18 111.9 12.5 123 121-244 14-138 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.5 9.9E-15 3.4E-19 115.1 6.4 134 134-269 15-153 (176)
134 4b8c_D Glucose-repressible alc 99.5 2.3E-15 7.9E-20 144.0 3.1 146 27-175 173-330 (727)
135 2o6r_A Variable lymphocyte rec 99.5 2.2E-13 7.4E-18 107.5 12.8 125 120-245 10-137 (177)
136 4b8c_D Glucose-repressible alc 99.5 3.9E-14 1.3E-18 135.6 8.3 113 154-269 217-329 (727)
137 4fs7_A Uncharacterized protein 99.5 2.3E-12 8E-17 114.7 18.9 276 21-309 65-373 (394)
138 4fs7_A Uncharacterized protein 99.4 3.9E-12 1.3E-16 113.3 16.9 255 18-287 85-375 (394)
139 4gt6_A Cell surface protein; l 99.4 2.4E-11 8.3E-16 108.2 20.6 256 22-288 58-367 (394)
140 1ds9_A Outer arm dynein; leuci 99.4 6.9E-15 2.3E-19 118.4 -3.8 135 152-292 39-186 (198)
141 3g39_A Variable lymphocyte rec 99.4 2.6E-12 8.7E-17 100.6 10.8 107 185-295 10-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 3.9E-12 1.3E-16 99.9 10.8 105 187-295 15-122 (174)
143 3g39_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 99.4 10.4 104 163-269 11-115 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 4.8E-14 1.6E-18 113.4 -0.8 129 135-269 45-185 (198)
145 2r9u_A Variable lymphocyte rec 99.3 6.9E-12 2.4E-16 98.5 10.5 106 164-272 15-121 (174)
146 4gt6_A Cell surface protein; l 99.3 9.8E-11 3.4E-15 104.2 18.3 261 18-290 78-390 (394)
147 3un9_A NLR family member X1; l 99.3 7.8E-13 2.7E-17 116.6 3.7 153 116-269 71-252 (372)
148 4h09_A Hypothetical leucine ri 99.3 1.1E-09 3.7E-14 96.9 22.6 263 25-300 44-354 (379)
149 3un9_A NLR family member X1; l 99.2 1.8E-12 6.3E-17 114.2 2.0 159 94-253 71-260 (372)
150 4h09_A Hypothetical leucine ri 99.2 1.1E-08 3.9E-13 90.3 24.1 247 52-309 45-340 (379)
151 2ifg_A High affinity nerve gro 99.1 3.1E-10 1E-14 99.2 10.5 102 165-269 12-116 (347)
152 2ifg_A High affinity nerve gro 99.1 3E-10 1E-14 99.3 9.0 105 187-295 11-120 (347)
153 2ra8_A Uncharacterized protein 98.8 3.6E-09 1.2E-13 92.6 6.9 138 154-294 165-323 (362)
154 2ra8_A Uncharacterized protein 98.7 4.1E-08 1.4E-12 85.9 10.3 59 111-169 166-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 7.7E-08 2.6E-12 76.0 4.3 83 210-292 66-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 9.2E-08 3.2E-12 75.5 3.7 115 154-269 29-164 (185)
157 3e4g_A ATP synthase subunit S, 98.1 2.6E-06 9E-11 65.9 4.7 76 53-128 61-150 (176)
158 3e4g_A ATP synthase subunit S, 97.9 9.7E-06 3.3E-10 62.7 5.1 34 185-219 62-95 (176)
159 3rw6_A Nuclear RNA export fact 97.9 4.6E-06 1.6E-10 69.4 2.8 64 229-292 167-234 (267)
160 3rw6_A Nuclear RNA export fact 97.8 3.1E-05 1E-09 64.4 5.6 76 206-284 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00018 6.1E-09 56.7 5.2 106 184-290 41-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00039 1.3E-08 54.7 5.4 20 71-90 66-85 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00057 2E-08 50.1 5.1 54 30-88 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0025 8.5E-08 46.7 5.4 35 234-268 33-67 (130)
165 2lz0_A Uncharacterized protein 80.4 1.4 4.7E-05 30.2 3.1 46 37-85 6-53 (100)
166 2lz0_A Uncharacterized protein 75.7 5.4 0.00018 27.1 5.1 38 227-265 15-52 (100)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=249.02 Aligned_cols=288 Identities=19% Similarity=0.197 Sum_probs=230.9
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEE
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETL 100 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L 100 (325)
+++++|+++++.++.++...| ..+ ++|++|+|++|.+..++ .|.++++|++|++++|.+..+ ..| +++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF-ASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHc-cCC-CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 478899999999998887677 777 89999999999888874 788899999999999988887 345 7899999
Q ss_pred EeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCc
Q psy11652 101 SVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQIS 174 (325)
Q Consensus 101 ~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~ 174 (325)
++++|.+... ..+..+++|++|++++|.+..++ +..+++|++|++++|.++.+ +..+.++++|+.|++.+|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999988777 67888899999999999888665 66788999999999988887 567888899999999998888
Q ss_pred ccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchh
Q psy11652 175 KLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTF 252 (325)
Q Consensus 175 ~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l 252 (325)
.++...+.. ++|+.|++++|......+....... +|+.|++++|.+..+|. .+..+++|+.|++++|.++++++..+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 776654444 8888888888764433223333444 78888888888887774 67888888888888888888877778
Q ss_pred ccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652 253 EHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM 317 (325)
Q Consensus 253 ~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (325)
..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.+++..+.....+..+++..|.+.+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 888888888888888886654 88888888888888888888887766666777778888877543
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-31 Score=233.43 Aligned_cols=260 Identities=20% Similarity=0.293 Sum_probs=135.7
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV 102 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l 102 (325)
.+++|++|+++++.++.++. + ..+ ++|++|++++|.+..++.+.++++|++|++++|.+..++.+ +++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~-~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--I-EYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--G-GGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchh--h-hhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 55566666666666666554 3 333 66666666666666555556666666666666665555444 566666666
Q ss_pred ecCcccchhhhccCCCCCEEEccCCcc-eeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccC-
Q psy11652 103 ANNYLVNYLELNRMTSLKWIVLSNNYI-KEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNAN- 179 (325)
Q Consensus 103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~- 179 (325)
++|.+.....+..+++|++|++++|.. ..++ ...+++|++|++++|.+...+. +..+++|+.|++.+|.+..++..
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 196 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLA 196 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGG
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccccc
Confidence 666655554455566666666665532 2333 4455555555555555554422 44555555555555555444330
Q ss_pred --------------------ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeC
Q psy11652 180 --------------------TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYL 239 (325)
Q Consensus 180 --------------------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 239 (325)
+...++|+.|++++|.++..++ +..++ +|+.|++++|.+..++ .+..+++|++|++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l 272 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLS-QLTWLEIGTNQISDIN-AVKDLTKLKMLNV 272 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCCG-GGTTCTTCCEEEC
T ss_pred CCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCC-CCCEEECCCCccCCCh-hHhcCCCcCEEEc
Confidence 2223445555555554444432 44444 5555555555444442 2444455555555
Q ss_pred CCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 240 HNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 240 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
++|.+++++ .+..+++|+.|++++|.++..+. +..+++|+.|++++|+++++++
T Consensus 273 ~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 273 GSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 555544442 24444555555555555543332 4445555555555555555444
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.6e-32 Score=245.33 Aligned_cols=288 Identities=25% Similarity=0.271 Sum_probs=212.3
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCccc-ccc--cccCCCCccEEEccCCCCccc--ccc--cCCccE
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIH-QIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMET 99 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~ 99 (325)
+++++|+++++.++.++...| ..+ ++|++|++++|.+. .++ .|.++++|++|++++|.+..+ ..| +++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~-~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSF-SRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTT-SSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHh-ccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 468888888888887766567 666 78888888888765 443 677788888888888877766 445 778888
Q ss_pred EEeecCcccch--h--hhccCCCCCEEEccCCcceee-c---CCCCCCccEEEccCCccccc-hhhccC-----------
Q psy11652 100 LSVANNYLVNY--L--ELNRMTSLKWIVLSNNYIKEF-V---IPNRKHIEKLDLSNNLISTI-NLNLNN----------- 159 (325)
Q Consensus 100 L~l~~~~l~~~--~--~~~~~~~L~~L~l~~~~~~~~-~---~~~~~~L~~L~l~~~~~~~~-~~~~~~----------- 159 (325)
|++++|.+... . .+..+++|++|++++|.++.+ | +..+++|++|++++|.++.. +..+..
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 88888877653 2 377778888888888877754 3 34677788888887777665 433333
Q ss_pred -----------------------CCCccEEEccCCcCcccccC-------------------------------------
Q psy11652 160 -----------------------TYYIKDLILSYNQISKLNAN------------------------------------- 179 (325)
Q Consensus 160 -----------------------~~~L~~L~l~~~~l~~~~~~------------------------------------- 179 (325)
+++|+.|++++|.+....+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 25677777776655321000
Q ss_pred ---ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchhccC
Q psy11652 180 ---TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255 (325)
Q Consensus 180 ---~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 255 (325)
....++|+.|++++|.+++..+..+..++ +|+.|++++|.+..++ ..+..+++|++|++++|.++++.+..+..+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred ccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 00114677888888888777777788887 8899999888888654 477888889999999998888877788888
Q ss_pred ccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652 256 VNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM 317 (325)
Q Consensus 256 ~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (325)
++|+.|++++|.++.+++ +..+++|++|++++|++++++++.......+..+++..|++.+.
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 889999999998886643 88888999999999999888887666666777888888888543
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.4e-31 Score=232.27 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=205.0
Q ss_pred cCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecCcccchh
Q psy11652 34 NEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111 (325)
Q Consensus 34 l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~ 111 (325)
+....++++.. + ..+ ++|++|+++++.+..++.+..+++|++|++++|.+.++..+ +++|++|++++|.+..+.
T Consensus 29 ~~~~~~~~~~~--~-~~l-~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 29 LQKASVTDVVT--Q-EEL-ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp HTCSCTTSEEC--H-HHH-TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred ccccccCCccc--c-hhc-ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch
Confidence 34444444444 2 445 99999999999999998889999999999999999888557 999999999999998888
Q ss_pred hhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEE
Q psy11652 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLY 190 (325)
Q Consensus 112 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 190 (325)
.+.++++|++|++++|.+..++ ...+++|++|++++|........+..+++|+.|++.+|.+..++. +...++|+.|+
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS 183 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE
T ss_pred HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE
Confidence 8999999999999999999888 788999999999999655554458999999999999999887765 45568999999
Q ss_pred cccCCCcccCh--------------------hhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccc
Q psy11652 191 LKFNKISEIHD--------------------FAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250 (325)
Q Consensus 191 l~~~~l~~~~~--------------------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 250 (325)
+++|.+++.++ ..+..++ +|+.|++++|.+..++. +..+++|++|++++|.++.++
T Consensus 184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-- 259 (347)
T 4fmz_A 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMT-RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-- 259 (347)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--
T ss_pred ccCCcccccccccCCCccceeecccCCCCCCchhhcCC-cCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--
Confidence 99998876643 0133333 55555555555554444 555566666666666555542
Q ss_pred hhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeecc
Q psy11652 251 TFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMED 319 (325)
Q Consensus 251 ~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (325)
.+..+++|+.|++++|.++.++.+..+++|+.|++++|++++.++........+..+++..|.+..++.
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 355566666666666666665446666667777777777666666555445556666777777655443
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=244.28 Aligned_cols=291 Identities=17% Similarity=0.208 Sum_probs=257.0
Q ss_pred hcccc-cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCC
Q psy11652 24 ISCIL-LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKT 96 (325)
Q Consensus 24 ~~~~~-L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~ 96 (325)
+.|.. -+.+++++..++.+|. .+ +++++.|++++|.+..++ .|.++++|++|++++|.+..+ ..| +++
T Consensus 7 C~C~~~~~~v~c~~~~l~~ip~-~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 7 CECSAQDRAVLCHRKRFVAVPE-GI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp CEEETTTTEEECCSCCCSSCCS-CC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CeECCCCCEEEeCCCCcCcCCC-CC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 44543 4689999999999998 45 378999999999999886 899999999999999999888 566 899
Q ss_pred ccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC
Q psy11652 97 METLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY 170 (325)
Q Consensus 97 L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 170 (325)
|+.|++++|.+..+ ..+.++++|++|++++|.+..++ +..+++|++|++++|.++.+ +..|.++++|+.|++.+
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 99999999999888 46789999999999999998665 66899999999999999988 78899999999999999
Q ss_pred CcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCC-cCchHhhhCCCCCCEEeCCCCcccccc
Q psy11652 171 NQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL-TNINQCFRNLKKLKYLYLHNNNIEFIQ 248 (325)
Q Consensus 171 ~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~L~~L~l~~~~l~~~~ 248 (325)
|.++.++...+. .++|+.|++++|.+....+..|..++ +|+.|++++|.. ..++.......+|+.|++++|.++.++
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred CcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence 999988765444 49999999999999999888899998 999999999764 466665556679999999999999998
Q ss_pred cchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeeccc
Q psy11652 249 NNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQ 320 (325)
Q Consensus 249 ~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (325)
...+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+++........+..+++..|++..++..
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 8889999999999999999998876 89999999999999999999988877778888899999999877653
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.3e-31 Score=247.97 Aligned_cols=286 Identities=19% Similarity=0.216 Sum_probs=219.1
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS 101 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~ 101 (325)
.+++|+++++.|+.++...| ..+ ++|++|++++|.+..++ +|.++++|++|++++|.+..+ ..| +++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~-~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTF-SRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTS-TTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHh-ccC-ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 78999999999999977678 777 89999999999988774 789999999999999998877 456 89999999
Q ss_pred eecCcccch--hhhccCCCCCEEEccCCcceee--c-CCCCCCccEEEccCCccccc-hhhccCCCCcc--EEEccCCcC
Q psy11652 102 VANNYLVNY--LELNRMTSLKWIVLSNNYIKEF--V-IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIK--DLILSYNQI 173 (325)
Q Consensus 102 l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~--~L~l~~~~l 173 (325)
+++|.+..+ ..+.++++|++|++++|.+..+ | ...+++|++|++++|.++.+ +..++.+++|+ .|++.+|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999998887 6788999999999999999865 4 55689999999999999888 77788888888 788888887
Q ss_pred cccccCccCCc----------------------------------------------------cccEEEcccCCCcccCh
Q psy11652 174 SKLNANTFRNL----------------------------------------------------NVFRLYLKFNKISEIHD 201 (325)
Q Consensus 174 ~~~~~~~~~~~----------------------------------------------------~L~~L~l~~~~l~~~~~ 201 (325)
..+++..+... +++.|++++|.++++++
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 76655444322 56667777777777777
Q ss_pred hhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC--CCCCC
Q psy11652 202 FAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD--FIHNK 278 (325)
Q Consensus 202 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~--~~~~~ 278 (325)
..|..++ +|++|++++|.+..+|..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+. .+|. +..++
T Consensus 272 ~~~~~l~-~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFS-GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCT-TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhcccc-CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 7777777 888888888888877777777888888888888877766666666777777777777665 4443 55666
Q ss_pred CCCEEECCCCcCcccc--cccccchhhhccccccccccee
Q psy11652 279 RLSHLNLGYNFLNELI--LESSIVENEIIDQNMLFNSNAV 316 (325)
Q Consensus 279 ~L~~L~l~~n~i~~~~--~~~~~~~~~~~~~~~~~~~~~~ 316 (325)
+|++|++++|.++.++ +.......++..+++..|.+..
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 6666666666666554 3333333444445555555433
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=9.3e-31 Score=233.88 Aligned_cols=279 Identities=20% Similarity=0.241 Sum_probs=157.9
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCc
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTM 97 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L 97 (325)
..++++++++++++.++.+|...| ..+ ++|++|++++|.+..++ .|.++++|++|++++|.+..+ ..| +++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~-~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALL-DSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHH-HHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhhCChhHh-ccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 345666666666666666666334 444 66666666666666654 566666666666666666655 233 6666
Q ss_pred cEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccchhhccCCC-----------
Q psy11652 98 ETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTINLNLNNTY----------- 161 (325)
Q Consensus 98 ~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~----------- 161 (325)
++|++++|.+..+ ..+.++++|++|++++|.++.++ +..+++|++|++++|.++.++ +..++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence 6666666666655 23456666666666666666544 445566666666666665541 22233
Q ss_pred --------CccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCC
Q psy11652 162 --------YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLK 232 (325)
Q Consensus 162 --------~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~ 232 (325)
+|+.|++.+|.+..++... .++|+.|++++|.+++. ..+..++ +|++|++++|.+..+ |..+..++
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCS
T ss_pred ccccCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC-CccEEECCCCcCCCcChhHccccc
Confidence 3444444444444433221 24566666666665544 2455555 666666666665533 34555666
Q ss_pred CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccccc
Q psy11652 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLF 311 (325)
Q Consensus 233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~ 311 (325)
+|++|++++|.+++++. .+..+++|+.|++++|.++.+|. +..+++|+.|++++|+++.++.. ....+..+++..
T Consensus 273 ~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~L~~L~l~~ 348 (390)
T 3o6n_A 273 RLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSH 348 (390)
T ss_dssp SCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCC---TTCCCSEEECCS
T ss_pred cCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCch---hhccCCEEEcCC
Confidence 66666666666655433 23445666666666666665554 55556666666666666655422 122344455555
Q ss_pred ccce
Q psy11652 312 NSNA 315 (325)
Q Consensus 312 ~~~~ 315 (325)
|++.
T Consensus 349 N~~~ 352 (390)
T 3o6n_A 349 NDWD 352 (390)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 5553
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.6e-30 Score=243.78 Aligned_cols=181 Identities=24% Similarity=0.238 Sum_probs=94.8
Q ss_pred CccEEEccCCccccc---hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccCh-hhhhCccccCCEE
Q psy11652 139 HIEKLDLSNNLISTI---NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHD-FAFNGLNSTLEFL 214 (325)
Q Consensus 139 ~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L 214 (325)
+|++|++++|.++.. +..+..+++|+.|++++|.+..++..+...++|+.|++++|.+.+..+ ..+..++ +|+.|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-TCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc-cCCEE
Confidence 334444444443332 333444555555555555554444334344566666666665555444 3455555 66666
Q ss_pred EccCCCCc-CchHhhhCCCCCCEEeCCCCcccc-cccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcC
Q psy11652 215 DLENNRLT-NINQCFRNLKKLKYLYLHNNNIEF-IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFL 290 (325)
Q Consensus 215 ~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i 290 (325)
++++|.+. ..|..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.++.+++ +..+++|++|++++|++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 66666555 233445555566666666665554 234445555566666666665554432 55555566666666655
Q ss_pred cccccccccchhhhcccccccccceeeccc
Q psy11652 291 NELILESSIVENEIIDQNMLFNSNAVMEDQ 320 (325)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (325)
+++++........+..+++..|++..+|..
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 555554444444455555555555555443
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.2e-30 Score=223.03 Aligned_cols=274 Identities=16% Similarity=0.200 Sum_probs=231.2
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS 101 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~ 101 (325)
+++.++++++.++.+|. .+ .+.+++|++++|.++.++ .|.++++|++|++++|.+..+ ..| +++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCc-cC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 79999999999999988 44 378999999999999887 789999999999999999888 456 89999999
Q ss_pred eecCcccch-hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCcccc--c-hhhccCCCCccEEEccCCcCc
Q psy11652 102 VANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLIST--I-NLNLNNTYYIKDLILSYNQIS 174 (325)
Q Consensus 102 l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~--~-~~~~~~~~~L~~L~l~~~~l~ 174 (325)
+++|.+..+ ..+ .++|++|++++|.++.++ +..+++|+.|++++|.++. . +..+.++++|+.|++.+|.++
T Consensus 107 Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 107 LSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999998877 322 279999999999999776 6789999999999999864 3 778899999999999999999
Q ss_pred ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhc
Q psy11652 175 KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFE 253 (325)
Q Consensus 175 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~ 253 (325)
.++.... ++|+.|++++|.+++..+..+..++ +|+.|++++|.+..++. .+..+++|++|++++|.++.++. .+.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~ 260 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLA 260 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-hhc
Confidence 8876554 8999999999999998888899998 99999999999986664 78889999999999999997766 578
Q ss_pred cCccCCEEEccCCCCcccCC--CCC------CCCCCEEECCCCcCcc--cccccccchhhhcccccccc
Q psy11652 254 HLVNLKSISLSGNKLTRIPD--FIH------NKRLSHLNLGYNFLNE--LILESSIVENEIIDQNMLFN 312 (325)
Q Consensus 254 ~~~~L~~L~l~~n~l~~l~~--~~~------~~~L~~L~l~~n~i~~--~~~~~~~~~~~~~~~~~~~~ 312 (325)
.+++|+.|++++|.++.++. +.. .++++.+++++|++.. +++..+.....+..+++..|
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 88999999999999998876 432 3788999999999976 44444444455555666555
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.9e-30 Score=236.45 Aligned_cols=272 Identities=25% Similarity=0.273 Sum_probs=228.1
Q ss_pred hhcccccceEEcCCCcee-eecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--c--cc--
Q psy11652 23 QISCILLMSAENEDNQIA-ELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--D--SL-- 93 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~--~l-- 93 (325)
...+++|++|+++++.+. .++...| ..+ ++|++|++++|.+..++ .|.++++|++|++++|.+... . .|
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTF-RGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTT-TTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hccCccccEEECcCCcccceECcccc-ccc-ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 457889999999999886 7776577 777 89999999999988774 789999999999999998863 2 25
Q ss_pred cCCccEEEeecCcccch-h--hhccCCCCCEEEccCCcceeec---CC--------------------------------
Q psy11652 94 PKTMETLSVANNYLVNY-L--ELNRMTSLKWIVLSNNYIKEFV---IP-------------------------------- 135 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~-~--~~~~~~~L~~L~l~~~~~~~~~---~~-------------------------------- 135 (325)
+++|++|++++|.+... . .+.++++|++|++++|.++.++ +.
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 89999999999988877 2 3889999999999999877443 11
Q ss_pred --CCCCccEEEccCCccccc-hhhccC---------------------------------------CCCccEEEccCCcC
Q psy11652 136 --NRKHIEKLDLSNNLISTI-NLNLNN---------------------------------------TYYIKDLILSYNQI 173 (325)
Q Consensus 136 --~~~~L~~L~l~~~~~~~~-~~~~~~---------------------------------------~~~L~~L~l~~~~l 173 (325)
.+++|++|++++|.++.. +..+.. .++|+.|++++|.+
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 236789999999887654 332211 25799999999998
Q ss_pred cccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccch
Q psy11652 174 SKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNT 251 (325)
Q Consensus 174 ~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~ 251 (325)
....+..+. .++|+.|++++|.+++..+..|..++ +|+.|++++|.+..+ +..+..+++|++|++++|.++++.+..
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 876555444 49999999999999999888999998 999999999999866 457899999999999999999998888
Q ss_pred hccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccccc
Q psy11652 252 FEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297 (325)
Q Consensus 252 l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~ 297 (325)
+..+++|+.|++++|+++.+|. +..+++|+.|++++|+++...+..
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 9999999999999999999887 789999999999999999876644
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=5.9e-30 Score=241.35 Aligned_cols=286 Identities=20% Similarity=0.232 Sum_probs=250.9
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEe
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSV 102 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l 102 (325)
.+++|+++++.++.++...| ..+ ++|++|++++|.++.+| .+.++++|++|++++|.+..+ ..+ +++|+.|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~-~~l-~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTF-HCF-SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTT-TTC-TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHh-ccc-cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 79999999999999998677 777 99999999999999998 889999999999999999887 455 899999999
Q ss_pred ecCcccch---hhhccCCCCCEEEccCCcceee---c--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcC
Q psy11652 103 ANNYLVNY---LELNRMTSLKWIVLSNNYIKEF---V--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQI 173 (325)
Q Consensus 103 ~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~---~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l 173 (325)
++|.+... ..+..+++|++|++++|.+..+ + +..+++|++|++++|.+... +..+..+++|+.|++.+|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 99987643 4588999999999999999855 3 66889999999999999888 88899999999999999988
Q ss_pred cccc-cC-ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC--ch--HhhhCCCCCCEEeCCCCccccc
Q psy11652 174 SKLN-AN-TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN--IN--QCFRNLKKLKYLYLHNNNIEFI 247 (325)
Q Consensus 174 ~~~~-~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~--~~~~~~~~L~~L~l~~~~l~~~ 247 (325)
.... .. +...++|+.|++++|.++...+..+..++ +|++|++++|.+.. ++ ..+..+++|++|++++|.++++
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 7653 33 44459999999999999988888899998 99999999998874 22 3688999999999999999999
Q ss_pred ccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652 248 QNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM 317 (325)
Q Consensus 248 ~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (325)
++..+..+++|+.|++++|+++.+++ +..+++| .|++++|+++++++.......++..+++..|++.+.
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 88889999999999999999996554 8999999 999999999999998777777788889999988653
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.1e-31 Score=249.45 Aligned_cols=299 Identities=21% Similarity=0.266 Sum_probs=212.2
Q ss_pred ccchh---hhhccc---ccceEEcCCCcee-eecCCCcCcccccCccEEECCCCcc------------------------
Q psy11652 17 PCSEN---VQISCI---LLMSAENEDNQIA-ELETANWSPEIQNKLTTLFIGENHI------------------------ 65 (325)
Q Consensus 17 ~~~~~---~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~------------------------ 65 (325)
.|+.| .++.|. +++.|+++++.+. .+|. .+ +++ ++|++|+|++|.+
T Consensus 65 ~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l-~~L-~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (636)
T 4eco_A 65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AI-GQL-TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141 (636)
T ss_dssp CGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GG-GGC-TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHH
T ss_pred CcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HH-hcC-ccceEEECcCCccccCCccccccccccCchHHHHHHH
Confidence 45568 888883 7999999999888 5665 78 777 8999999988743
Q ss_pred ------------------------------------------------------cccc-cccCCCCccEEEccCCCCcc-
Q psy11652 66 ------------------------------------------------------HQIE-NLNGFRSILWLNMDSNLLQT- 89 (325)
Q Consensus 66 ------------------------------------------------------~~~~-~~~~~~~L~~L~l~~~~~~~- 89 (325)
+++| .+.++++|++|++++|.+..
T Consensus 142 ~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~ 221 (636)
T 4eco_A 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE 221 (636)
T ss_dssp HTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGG
T ss_pred HhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccc
Confidence 3456 68889999999999998887
Q ss_pred -----------------c-ccc----cCCccEEEeecCcccch--hhhccCCCCCEEEccCCc-cee--ec--CCC----
Q psy11652 90 -----------------L-DSL----PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNY-IKE--FV--IPN---- 136 (325)
Q Consensus 90 -----------------~-~~l----~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~-~~~--~~--~~~---- 136 (325)
+ ..+ +++|++|++++|.+... ..+.++++|++|++++|. ++. +| +..
T Consensus 222 ~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~ 301 (636)
T 4eco_A 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301 (636)
T ss_dssp GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred cccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence 5 332 68889999998876665 678888899999999887 764 66 333
Q ss_pred --CCCccEEEccCCccccchh--hccCCCCccEEEccCCcCc-ccccCccCCccccEEEcccCCCcccChhhhhCcccc-
Q psy11652 137 --RKHIEKLDLSNNLISTINL--NLNNTYYIKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNST- 210 (325)
Q Consensus 137 --~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~- 210 (325)
+++|++|++++|.++.+|. .++++++|+.|++++|.+. .++ .+...++|+.|++++|.++.++ ..+..++ +
T Consensus 302 ~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~-~~ 378 (636)
T 4eco_A 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP-ANFCGFT-EQ 378 (636)
T ss_dssp GGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECC-TTSEEEC-TT
T ss_pred ccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccccc-Hhhhhhc-cc
Confidence 3888888888888887776 7888888888888888887 666 4545588888888888877554 4567777 6
Q ss_pred CCEEEccCCCCcCchHhhhCCC--CCCEEeCCCCcccccccchhc-------cCccCCEEEccCCCCcccCC--CCCCCC
Q psy11652 211 LEFLDLENNRLTNINQCFRNLK--KLKYLYLHNNNIEFIQNNTFE-------HLVNLKSISLSGNKLTRIPD--FIHNKR 279 (325)
Q Consensus 211 L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~l~-------~~~~L~~L~l~~n~l~~l~~--~~~~~~ 279 (325)
|+.|++++|.+..+|..+...+ +|++|++++|.+++..+..+. .+++|+.|++++|.++.+|. +..+++
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 8888888887777776554433 666777777666655444444 44566666666666666665 444566
Q ss_pred CCEEECCCCcCcccccccccchh-------hhcccccccccceeecccc
Q psy11652 280 LSHLNLGYNFLNELILESSIVEN-------EIIDQNMLFNSNAVMEDQF 321 (325)
Q Consensus 280 L~~L~l~~n~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 321 (325)
|+.|++++|.++.+|........ .+..+++..|.+..++..+
T Consensus 459 L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 66666666666655554433222 4555555566555555443
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.6e-30 Score=228.36 Aligned_cols=258 Identities=20% Similarity=0.238 Sum_probs=217.1
Q ss_pred cCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEc
Q psy11652 53 NKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVL 124 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l 124 (325)
++++.|+++++.++.+| .+.++++|++|++++|.+..+ ..| +++|++|++++|.+..+ ..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 89999999999999998 578999999999999999888 466 89999999999999888 56899999999999
Q ss_pred cCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCCccc--------------
Q psy11652 125 SNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNV-------------- 186 (325)
Q Consensus 125 ~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L-------------- 186 (325)
++|.++.+| +..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++.. ..++|
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGG--GCTTCSEEECCSSCCSEEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccc--cccccceeecccccccccC
Confidence 999999888 46789999999999999988 77899999999999999998865422 22444
Q ss_pred -----cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEE
Q psy11652 187 -----FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI 261 (325)
Q Consensus 187 -----~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 261 (325)
+.|++++|.++..+. ...+ +|+.|++++|.+...+ .+..+++|++|++++|.++++.+..+..+++|+.|
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~---~~~~-~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRG---PVNV-ELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp CCSSCSEEECCSSCCCEEEC---CCCS-SCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred CCCcceEEECCCCeeeeccc---cccc-cccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 455555555544422 1233 7899999999888764 67889999999999999999888889999999999
Q ss_pred EccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeec
Q psy11652 262 SLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVME 318 (325)
Q Consensus 262 ~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (325)
++++|.++.+|. +..+++|++|++++|+++.+++.. .....+..+++..|++..++
T Consensus 278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp ECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred ECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECCCCccceeC
Confidence 999999998887 778899999999999999988764 33456777888899887665
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=9.8e-30 Score=232.41 Aligned_cols=283 Identities=25% Similarity=0.322 Sum_probs=172.0
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS 101 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~ 101 (325)
..+++|++|+++++.++.++. + ..+ ++|++|++++|.+..++.+.++++|++|++++|.+..+..+ +++|++|+
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~--~-~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 140 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP--L-KNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--G-TTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hhhcCCCEEECCCCccCCchh--h-hcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEE
Confidence 357778888888887777765 4 555 77777777777777666667777777777777766666435 66666666
Q ss_pred eecCcccch---------------------hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchh----
Q psy11652 102 VANNYLVNY---------------------LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINL---- 155 (325)
Q Consensus 102 l~~~~l~~~---------------------~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~---- 155 (325)
+++|.+..+ ..+..+++|++|++++|.+..++ ...+++|++|++++|.+...+.
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l 220 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 220 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGC
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccccccc
Confidence 666654433 12445566666666666665555 4455566666666655554421
Q ss_pred -----------------hccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652 156 -----------------NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218 (325)
Q Consensus 156 -----------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 218 (325)
.+..+++|+.|++++|.+...++ +..+++|+.|++++|.+++.++ +..++ +|+.|++++
T Consensus 221 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~ 296 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNE 296 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCS
T ss_pred CCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCC
Confidence 23344445555555444444333 2333555555555555555433 44555 666666666
Q ss_pred CCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccccc
Q psy11652 219 NRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESS 298 (325)
Q Consensus 219 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~~~ 298 (325)
|.+..++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.++.+..+++|+.|++++|+++++++ .
T Consensus 297 n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~ 371 (466)
T 1o6v_A 297 NQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--L 371 (466)
T ss_dssp SCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred CcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--h
Confidence 66655544 5566666666776666666544 55667777777777777766556677777777777777777766 2
Q ss_pred cchhhhcccccccccceeecc
Q psy11652 299 IVENEIIDQNMLFNSNAVMED 319 (325)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (325)
....++..+++..|.+...|.
T Consensus 372 ~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 372 ANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp TTCTTCCEEECCCEEEECCCB
T ss_pred hcCCCCCEEeccCCcccCCch
Confidence 222344556666666655443
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.4e-30 Score=246.49 Aligned_cols=269 Identities=18% Similarity=0.237 Sum_probs=195.7
Q ss_pred hhcccccceEEcCCCceee------------------ecCCCcCc--ccccCccEEECCCCccc-ccc-cccCCCCccEE
Q psy11652 23 QISCILLMSAENEDNQIAE------------------LETANWSP--EIQNKLTTLFIGENHIH-QIE-NLNGFRSILWL 80 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~~------------------~~~~~~~~--~~~~~L~~L~l~~~~~~-~~~-~~~~~~~L~~L 80 (325)
...+++|++|++++|.++. +|. .+ . .+ ++|++|++++|.+. .+| .+.++++|++|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l-~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DL-KWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CC-CGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCch-hh-hhccc-CCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 3478999999999999998 888 67 6 67 99999999999865 566 89999999999
Q ss_pred EccCCC-Ccc--c-ccc--c------CCccEEEeecCcccch-h--hhccCCCCCEEEccCCcce-eec-CCCCCCccEE
Q psy11652 81 NMDSNL-LQT--L-DSL--P------KTMETLSVANNYLVNY-L--ELNRMTSLKWIVLSNNYIK-EFV-IPNRKHIEKL 143 (325)
Q Consensus 81 ~l~~~~-~~~--~-~~l--~------~~L~~L~l~~~~l~~~-~--~~~~~~~L~~L~l~~~~~~-~~~-~~~~~~L~~L 143 (325)
++++|. +.. + ..+ + ++|++|++++|.+..+ . .+..+++|++|++++|.++ .+| +..+++|++|
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L 358 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASL 358 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEE
Confidence 999998 775 3 334 3 9999999999999877 4 6999999999999999998 787 5567888888
Q ss_pred EccCCccccchhhccCCCC-ccEEEccCCcCcccccCccCC--ccccEEEcccCCCcccChhhhh-------CccccCCE
Q psy11652 144 DLSNNLISTINLNLNNTYY-IKDLILSYNQISKLNANTFRN--LNVFRLYLKFNKISEIHDFAFN-------GLNSTLEF 213 (325)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~-------~~~~~L~~ 213 (325)
++++|.++.+|..+..+++ |+.|++++|.++.++..+... ++|+.|++++|.+++..+..+. .++ +|+.
T Consensus 359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~-~L~~ 437 (636)
T 4eco_A 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSS 437 (636)
T ss_dssp ECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC-CEEE
T ss_pred ECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC-CCCE
Confidence 8888888877777888888 888888888887776654433 3677777777777665555554 444 6666
Q ss_pred EEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCc-------cCCEEEccCCCCcccCC-CC--CCCCCCE
Q psy11652 214 LDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLV-------NLKSISLSGNKLTRIPD-FI--HNKRLSH 282 (325)
Q Consensus 214 L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-------~L~~L~l~~n~l~~l~~-~~--~~~~L~~ 282 (325)
|++++|.+..+|. .+..+++|++|++++|.++.++...+.... +|+.|++++|.++.+|. +. .+++|+.
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCE
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCE
Confidence 6666666665554 334456666666666666655444333222 56666666666665555 33 5556666
Q ss_pred EECCCCcCccccc
Q psy11652 283 LNLGYNFLNELIL 295 (325)
Q Consensus 283 L~l~~n~i~~~~~ 295 (325)
|++++|+++++|.
T Consensus 518 L~Ls~N~l~~ip~ 530 (636)
T 4eco_A 518 IDLSYNSFSKFPT 530 (636)
T ss_dssp EECCSSCCSSCCC
T ss_pred EECCCCCCCCcCh
Confidence 6666666555443
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.9e-30 Score=224.29 Aligned_cols=273 Identities=17% Similarity=0.212 Sum_probs=230.8
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS 101 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~ 101 (325)
+++.++++++.++.+|. .+ .++|+.|++++|.+..++ .|.++++|++|++++|.+..+ ..| +++|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCC-CC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 79999999999999998 44 379999999999999886 799999999999999999887 556 89999999
Q ss_pred eecCcccch-hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCcccc--c-hhhccCCCCccEEEccCCcCc
Q psy11652 102 VANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLIST--I-NLNLNNTYYIKDLILSYNQIS 174 (325)
Q Consensus 102 l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~--~-~~~~~~~~~L~~L~l~~~~l~ 174 (325)
+++|.+..+ ..+. ++|++|++++|.++.++ +..+++|++|++++|.++. . +..+..+ +|+.|++++|.++
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998877 3332 89999999999999777 5689999999999999974 3 6777777 9999999999999
Q ss_pred ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhc
Q psy11652 175 KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFE 253 (325)
Q Consensus 175 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~ 253 (325)
.++.... ++|+.|++++|.++...+..+..++ +|+.|++++|.+..++. .+..+++|+.|++++|.++.++. .+.
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~ 261 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLP 261 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-TGG
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-hhh
Confidence 8876554 7999999999999999888899998 99999999999987765 78899999999999999997766 578
Q ss_pred cCccCCEEEccCCCCcccCC--CCC------CCCCCEEECCCCcCc--ccccccccchhhhcccccccc
Q psy11652 254 HLVNLKSISLSGNKLTRIPD--FIH------NKRLSHLNLGYNFLN--ELILESSIVENEIIDQNMLFN 312 (325)
Q Consensus 254 ~~~~L~~L~l~~n~l~~l~~--~~~------~~~L~~L~l~~n~i~--~~~~~~~~~~~~~~~~~~~~~ 312 (325)
.+++|+.|++++|.++.++. +.. .++|+.+++++|++. .+++..+.....+..+++..|
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 89999999999999998875 443 367899999999998 566655555555556666554
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.4e-30 Score=248.16 Aligned_cols=245 Identities=21% Similarity=0.198 Sum_probs=147.3
Q ss_pred CCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEE
Q psy11652 74 FRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLD 144 (325)
Q Consensus 74 ~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~ 144 (325)
+++|++|++++|.+... ..+ +++|+.|++++|.+... ..+..+++|+.|++++|.+. .+| +..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 44455555555554433 233 55666666666655543 45556666666666666655 333 44556666666
Q ss_pred ccCCccccc-hhhccCCCCccEEEccCCcCc-ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc
Q psy11652 145 LSNNLISTI-NLNLNNTYYIKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222 (325)
Q Consensus 145 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 222 (325)
+++|.+++. |..+.++++|+.|++++|.+. .++..+...++|+.|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccC
Confidence 666666644 666666666666666666665 3444444446666666666666655555666666 6666666666544
Q ss_pred -CchHh----------------------------------------------------------------------hhCC
Q psy11652 223 -NINQC----------------------------------------------------------------------FRNL 231 (325)
Q Consensus 223 -~~~~~----------------------------------------------------------------------~~~~ 231 (325)
.+|.. +..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 33321 1223
Q ss_pred CCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccc
Q psy11652 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNM 309 (325)
Q Consensus 232 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~ 309 (325)
++|+.|++++|.+++..+..++.++.|+.|++++|.++ .+|. ++.+++|+.|++++|++++..|........+..+++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 45666677777666655566677777777777777776 5555 677777777777777777666655555555666677
Q ss_pred ccccc-eeecc
Q psy11652 310 LFNSN-AVMED 319 (325)
Q Consensus 310 ~~~~~-~~~~~ 319 (325)
.+|++ +.+|.
T Consensus 712 s~N~l~g~iP~ 722 (768)
T 3rgz_A 712 SNNNLSGPIPE 722 (768)
T ss_dssp CSSEEEEECCS
T ss_pred cCCcccccCCC
Confidence 77766 44443
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=3.7e-29 Score=228.61 Aligned_cols=260 Identities=26% Similarity=0.351 Sum_probs=186.5
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS 101 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~ 101 (325)
.++++++.|+++++.++.++. + ..+ ++|++|++++|.+..++.+.++++|++|++++|.+..+..+ +++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~--~-~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG--V-EYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT--G-GGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcc--h-hhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 357899999999999999886 5 555 99999999999999888899999999999999999888447 89999999
Q ss_pred eecCcccchhhhccCCCCCEEEccCCcceeec-CC---------------------CCCCccEEEccCCccccchhhccC
Q psy11652 102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IP---------------------NRKHIEKLDLSNNLISTINLNLNN 159 (325)
Q Consensus 102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~---------------------~~~~L~~L~l~~~~~~~~~~~~~~ 159 (325)
+++|.+.....+.++++|++|++++|.+..++ +. .+++|++|++++|.++.++ .+..
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~ 197 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAK 197 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGG
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhcc
Confidence 99999988877999999999999999887655 33 4556666777777666553 3566
Q ss_pred CCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeC
Q psy11652 160 TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYL 239 (325)
Q Consensus 160 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 239 (325)
+++|+.|++.+|.+....+ ....++|+.|++++|.+++.+ .+..++ +|+.|++++|.+..++. +..+++|+.|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLT-NLTDLDLANNQISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCT-TCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred CCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCC-CCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence 6777777777776665544 333466666666666665542 355555 66666666666665544 555666666666
Q ss_pred CCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCccccc
Q psy11652 240 HNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 240 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
++|.++++++ +..+++|+.|++++|.+..++++..+++|+.|++++|.++++++
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh
Confidence 6666655543 45555666666666666555445555556666666665555554
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.4e-30 Score=240.01 Aligned_cols=278 Identities=21% Similarity=0.244 Sum_probs=154.7
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCc
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTM 97 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L 97 (325)
..+++++.++++++.++.+|...| ..+ ++|++|++++|.+..++ .|.++++|++|++++|.+..+ ..| +++|
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALL-DSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHH-HHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHH-ccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 345566666666666666665333 444 56666666666666554 556666666666666666555 233 5666
Q ss_pred cEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccchhhccCCC-----------
Q psy11652 98 ETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTINLNLNNTY----------- 161 (325)
Q Consensus 98 ~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~----------- 161 (325)
+.|++++|.+..+ ..+.++++|++|++++|.++.++ +..+++|++|++++|.++.++ +..++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence 6666666665555 23456666666666666665444 345566666666666655441 12223
Q ss_pred --------CccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCC
Q psy11652 162 --------YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLK 232 (325)
Q Consensus 162 --------~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~ 232 (325)
+|+.|++++|.+..++... .++|+.|++++|.+++. ..+..++ +|+.|++++|.+..+ |..+..++
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCC-CCCEEECCCCccCCCCHHHhcCcc
Confidence 3444445444444333322 14566666666665543 3455555 666666666666533 34556666
Q ss_pred CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccccc
Q psy11652 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLF 311 (325)
Q Consensus 233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~ 311 (325)
+|+.|++++|.+++++. .+..+++|+.|++++|.++.+|. +..+++|+.|++++|.++.++... ...+..+++..
T Consensus 279 ~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~L~~L~l~~ 354 (597)
T 3oja_B 279 RLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST---HHTLKNLTLSH 354 (597)
T ss_dssp SCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCT---TCCCSEEECCS
T ss_pred CCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhh---cCCCCEEEeeC
Confidence 66666666666665533 33445666666666666666655 555566666666666666554221 12344455555
Q ss_pred ccc
Q psy11652 312 NSN 314 (325)
Q Consensus 312 ~~~ 314 (325)
|++
T Consensus 355 N~~ 357 (597)
T 3oja_B 355 NDW 357 (597)
T ss_dssp SCE
T ss_pred CCC
Confidence 555
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.4e-30 Score=247.00 Aligned_cols=294 Identities=20% Similarity=0.211 Sum_probs=183.2
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCccc-ccc--cccCCCCccEEEccCCCCccc--ccc--cC-C
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIH-QIE--NLNGFRSILWLNMDSNLLQTL--DSL--PK-T 96 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~-~ 96 (325)
.|++|++|++++|.++......| ..+ ++|++|++++|.+. .+| .+.++++|++|++++|.+... ..+ ++ +
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~-~~l-~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFF-GSC-SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGG-GGC-TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred hcCcCCEEECcCCcCCCccchHH-hcC-CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 35677777777777764433355 555 77777777777766 555 367777777777777766522 233 22 5
Q ss_pred ccEEEeecCcccc--------------------------h--hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEEc
Q psy11652 97 METLSVANNYLVN--------------------------Y--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLDL 145 (325)
Q Consensus 97 L~~L~l~~~~l~~--------------------------~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~l 145 (325)
|+.|++++|.+.. . ..+.++++|++|++++|.++ .+| +..+++|++|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 5555555544332 2 34455555555555555554 333 345556666666
Q ss_pred cCCccccc-hhhccCCCCccEEEccCCcCcc-cccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-
Q psy11652 146 SNNLISTI-NLNLNNTYYIKDLILSYNQISK-LNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT- 222 (325)
Q Consensus 146 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~- 222 (325)
++|.+.+. |..+..+++|+.|++.+|.+.. ++..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSG 528 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccC
Confidence 66665544 5556666666666666666653 333344446666777777666665566666666 7777777777665
Q ss_pred CchHhhhCCCCCCEEeCCCCcccccccc----------------------------------------------------
Q psy11652 223 NINQCFRNLKKLKYLYLHNNNIEFIQNN---------------------------------------------------- 250 (325)
Q Consensus 223 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~---------------------------------------------------- 250 (325)
.+|..+..+++|+.|++++|.+++..|.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 5566666777777777777766532111
Q ss_pred ------------------hhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccc
Q psy11652 251 ------------------TFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNML 310 (325)
Q Consensus 251 ------------------~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~ 310 (325)
.++.+++|+.|++++|+++ .+|. ++.+++|+.|++++|.+++..+........+..+++.
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 1223456777788888777 5665 7788888888888888887666666666777778888
Q ss_pred cccce-eecccc
Q psy11652 311 FNSNA-VMEDQF 321 (325)
Q Consensus 311 ~~~~~-~~~~~~ 321 (325)
.|++. .+|..+
T Consensus 689 ~N~l~g~ip~~l 700 (768)
T 3rgz_A 689 SNKLDGRIPQAM 700 (768)
T ss_dssp SSCCEECCCGGG
T ss_pred CCcccCcCChHH
Confidence 88874 566554
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=7.1e-30 Score=246.63 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=133.7
Q ss_pred hhcccccceEEcCCCceee------------------ecCCCcCc--ccccCccEEECCCCccc-ccc-cccCCCCccEE
Q psy11652 23 QISCILLMSAENEDNQIAE------------------LETANWSP--EIQNKLTTLFIGENHIH-QIE-NLNGFRSILWL 80 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~~------------------~~~~~~~~--~~~~~L~~L~l~~~~~~-~~~-~~~~~~~L~~L 80 (325)
..++++|++|++++|.++. +|. .+ + ++ ++|++|+|++|.+. .+| .+.++++|++|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l-~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-EL-SWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CC-CGGGC-TTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hh-hhccC-CCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 3478899999999999998 777 55 4 67 89999999999754 567 88999999999
Q ss_pred EccCCC-Ccc--c-ccc---------cCCccEEEeecCcccch-h--hhccCCCCCEEEccCCcceeec-CCCCCCccEE
Q psy11652 81 NMDSNL-LQT--L-DSL---------PKTMETLSVANNYLVNY-L--ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKL 143 (325)
Q Consensus 81 ~l~~~~-~~~--~-~~l---------~~~L~~L~l~~~~l~~~-~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L 143 (325)
++++|. +.. + ..+ +++|+.|++++|.+..+ . .+.++++|+.|++++|.++.+| +..+++|+.|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L 600 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDL 600 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEE
Confidence 999997 775 3 223 45999999999998877 4 6899999999999999988888 7778889999
Q ss_pred EccCCccccchhhccCCCC-ccEEEccCCcCcccccCccCC--ccccEEEcccCCC
Q psy11652 144 DLSNNLISTINLNLNNTYY-IKDLILSYNQISKLNANTFRN--LNVFRLYLKFNKI 196 (325)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~--~~L~~L~l~~~~l 196 (325)
++++|.++.+|..+..+++ |+.|++++|.++.++..+... ++|+.|++++|.+
T Consensus 601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence 9999888866777888888 888888888777665433322 2244444444444
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=9.8e-30 Score=239.82 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=170.1
Q ss_pred CCCCCEEEccCCcceee---c--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccccc--CccCCccccE
Q psy11652 116 MTSLKWIVLSNNYIKEF---V--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA--NTFRNLNVFR 188 (325)
Q Consensus 116 ~~~L~~L~l~~~~~~~~---~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~ 188 (325)
+++|++|++++|.++.+ + +..+++|++|++++|.++.++..+.++++|+.|++.+|.+...++ .+...++|+.
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 34556666666666543 3 447889999999999999888889999999999999999887655 3445599999
Q ss_pred EEcccCCCcccChhhhhCccccCCEEEccCCCCcC--chHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN--INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266 (325)
Q Consensus 189 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 266 (325)
|++++|.++...+..+..++ +|+.|++++|.+.. +|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|
T Consensus 429 L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 99999999998888899998 99999999999885 5778899999999999999999988888999999999999999
Q ss_pred CCccc-CC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652 267 KLTRI-PD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM 317 (325)
Q Consensus 267 ~l~~l-~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (325)
.++.+ |. +..+++|+.|++++|+++.+|.........+..+++..|.+.+.
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 99976 44 89999999999999999999988444434577889999988553
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.4e-29 Score=219.69 Aligned_cols=258 Identities=25% Similarity=0.350 Sum_probs=223.4
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCccccc-c-cccCCCCccEEEccCCCCccc-ccccCCccEEEee
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQI-E-NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVA 103 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~ 103 (325)
+.+++|+++++.++.++...| ..+ ++|++|++++|.+..+ | .+.++++|++|++++|.+..+ ..+.++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDF-KNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTT-TTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhh-ccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECC
Confidence 589999999999999998777 777 9999999999999988 4 899999999999999999888 5557999999999
Q ss_pred cCcccch--hhhccCCCCCEEEccCCccee--ec---CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccc
Q psy11652 104 NNYLVNY--LELNRMTSLKWIVLSNNYIKE--FV---IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL 176 (325)
Q Consensus 104 ~~~l~~~--~~~~~~~~L~~L~l~~~~~~~--~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 176 (325)
+|.+... ..+.++++|++|++++|.+.. +. +..+++|++|++++|.++.+|..+. ++|+.|++++|.++.+
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKV 207 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCcc
Confidence 9999888 578999999999999998863 22 5578999999999999998865543 8999999999999887
Q ss_pred ccCcc-CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc-
Q psy11652 177 NANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH- 254 (325)
Q Consensus 177 ~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~- 254 (325)
.+..+ ..++|+.|++++|.+++..+..+..++ +|+.|++++|.+..+|..+..+++|++|++++|.+++++...+..
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 55444 459999999999999998888898998 999999999999999998999999999999999999887766653
Q ss_pred -----CccCCEEEccCCCCc--ccCC--CCCCCCCCEEECCCCc
Q psy11652 255 -----LVNLKSISLSGNKLT--RIPD--FIHNKRLSHLNLGYNF 289 (325)
Q Consensus 255 -----~~~L~~L~l~~n~l~--~l~~--~~~~~~L~~L~l~~n~ 289 (325)
.+.++.+++.+|.+. .+++ +..+.+++.+++++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 368899999999997 3554 8889999999999885
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.8e-29 Score=242.54 Aligned_cols=287 Identities=19% Similarity=0.269 Sum_probs=173.0
Q ss_pred hcccccceEEcCCCc-eee--ecCCCcCccc------ccCccEEECCCCccccccc---ccCCCCccEEEccCCCCcccc
Q psy11652 24 ISCILLMSAENEDNQ-IAE--LETANWSPEI------QNKLTTLFIGENHIHQIEN---LNGFRSILWLNMDSNLLQTLD 91 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~-i~~--~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~ 91 (325)
..+++|++|++++|. ++. +|. .+ ..+ .++|++|++++|.+..+|. +.++++|++|++++|.+..++
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~-~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKA-DW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHH-HH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC
T ss_pred hCCCCCCEEECcCCCCcccccchH-HH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch
Confidence 467778888887776 664 554 33 333 1477777777777777664 677777777777777776555
Q ss_pred cc--cCCccEEEeecCcccch-hhhccCCC-CCEEEccCCcceeec--CCCC--CCccEEEccCCccccc-hh---hcc-
Q psy11652 92 SL--PKTMETLSVANNYLVNY-LELNRMTS-LKWIVLSNNYIKEFV--IPNR--KHIEKLDLSNNLISTI-NL---NLN- 158 (325)
Q Consensus 92 ~l--~~~L~~L~l~~~~l~~~-~~~~~~~~-L~~L~l~~~~~~~~~--~~~~--~~L~~L~l~~~~~~~~-~~---~~~- 158 (325)
.| +++|+.|++++|.+..+ ..+..+++ |+.|++++|.++.+| +... ++|+.|++++|.+.+. |. .+.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 55 67777777777777655 55667777 777777777777666 2222 2366666666666543 21 111
Q ss_pred -CCCCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccChhhhhC-------ccccCCEEEccCCCCcCchHhhh
Q psy11652 159 -NTYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFNG-------LNSTLEFLDLENNRLTNINQCFR 229 (325)
Q Consensus 159 -~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~ 229 (325)
.+++|+.|++++|.++.++..++ .+++|+.|++++|.++.++...+.. ++ +|+.|++++|.+..+|..+.
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~-~L~~L~Ls~N~L~~lp~~l~ 748 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY-LLTTIDLRFNKLTSLSDDFR 748 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG-GCCEEECCSSCCCCCCGGGS
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccC-CccEEECCCCCCccchHHhh
Confidence 23356666666666665555554 3366666666666666554433322 22 56666666666666665554
Q ss_pred --CCCCCCEEeCCCCcccccccchhccCccCCEEEccC------CCCc-ccCC-CCCCCCCCEEECCCCcCccccccccc
Q psy11652 230 --NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG------NKLT-RIPD-FIHNKRLSHLNLGYNFLNELILESSI 299 (325)
Q Consensus 230 --~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~------n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~ 299 (325)
.+++|+.|++++|.+++++. .+..+++|+.|++++ |.+. .+|. +..+++|+.|++++|+++.+|....
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~- 826 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT- 826 (876)
T ss_dssp TTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-
T ss_pred hccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc-
Confidence 56666666666666666433 455566666666654 4443 4444 5666666666666666655555422
Q ss_pred chhhhcccccccccceee
Q psy11652 300 VENEIIDQNMLFNSNAVM 317 (325)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~ 317 (325)
..+..+++..|++..+
T Consensus 827 --~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 827 --PQLYILDIADNPNISI 842 (876)
T ss_dssp --SSSCEEECCSCTTCEE
T ss_pred --CCCCEEECCCCCCCcc
Confidence 2455556666665444
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.5e-29 Score=236.44 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=60.6
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCcccccc-cCCccEEEee
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTLDSL-PKTMETLSVA 103 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l-~~~L~~L~l~ 103 (325)
+++++|++++|.++.++...| ..+ ++|++|++++|.++.++ .|.++++|++|++++|.+..++.. +++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~-~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDI-SFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGT-TTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhh-ccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECC
Confidence 456666666666666655455 555 66666666666666553 566666666666666666555222 5666666666
Q ss_pred cCcccch---hhhccCCCCCEEEccCCcce
Q psy11652 104 NNYLVNY---LELNRMTSLKWIVLSNNYIK 130 (325)
Q Consensus 104 ~~~l~~~---~~~~~~~~L~~L~l~~~~~~ 130 (325)
+|.+..+ ..+.++++|++|++++|.+.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCccccCchHhhcccCcccEEecCCCccc
Confidence 6665553 35566666666666666554
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=234.27 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=70.8
Q ss_pred hhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc---ccc--cCCc
Q psy11652 23 QISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL---DSL--PKTM 97 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l--~~~L 97 (325)
...+++|++|++++|.++.++...| ..+ ++|++|++++|.++.+|.. .+++|++|++++|.+..+ ..| +++|
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVF-KFN-QELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGG-TTC-TTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred ccccccccEEecCCCccCCcChHHh-hcc-cCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcc
Confidence 3466777777777777777655456 555 7777777777777777633 677777777777777653 345 7777
Q ss_pred cEEEeecCcccchhhhccCCCC--CEEEccCCcc
Q psy11652 98 ETLSVANNYLVNYLELNRMTSL--KWIVLSNNYI 129 (325)
Q Consensus 98 ~~L~l~~~~l~~~~~~~~~~~L--~~L~l~~~~~ 129 (325)
++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 118 ~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 118 KFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTT
T ss_pred eEEEecCcccch-hhccccccceeeEEEeecccc
Confidence 777777776655 345556666 7777777666
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.9e-29 Score=233.29 Aligned_cols=160 Identities=21% Similarity=0.241 Sum_probs=106.4
Q ss_pred hccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccCh-hhhhCccccCCEEEccCCCCc-CchHhhhCCCC
Q psy11652 156 NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHD-FAFNGLNSTLEFLDLENNRLT-NINQCFRNLKK 233 (325)
Q Consensus 156 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~ 233 (325)
.+.++++|+.|++++|.+..++..+..+++|+.|++++|.+....+ ..+..++ +|+.|++++|.+. ..+..+..+++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCc
Confidence 3444455555555555554444443344666666666666655433 3456666 7777777777766 34456777778
Q ss_pred CCEEeCCCCccc-ccccchhccCccCCEEEccCCCCccc-CC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccc
Q psy11652 234 LKYLYLHNNNIE-FIQNNTFEHLVNLKSISLSGNKLTRI-PD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNML 310 (325)
Q Consensus 234 L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~~l-~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~ 310 (325)
|++|++++|.++ +..+..+..+++|+.|++++|.++.+ |. +..+++|+.|++++|+++++++........+..+++.
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 888888888776 33445677778888888888888866 43 7778888888888888888877665555666777777
Q ss_pred ccccee
Q psy11652 311 FNSNAV 316 (325)
Q Consensus 311 ~~~~~~ 316 (325)
.|++.+
T Consensus 527 ~N~~~~ 532 (570)
T 2z63_A 527 TNPWDC 532 (570)
T ss_dssp SSCBCC
T ss_pred CCcccC
Confidence 777744
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.5e-28 Score=234.84 Aligned_cols=293 Identities=22% Similarity=0.253 Sum_probs=213.8
Q ss_pred hhcccccceEEcCCCceeeecCCCcCcccccCccEEECC---------------------------------CCcccccc
Q psy11652 23 QISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIG---------------------------------ENHIHQIE 69 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~---------------------------------~~~~~~~~ 69 (325)
...+++|++|++++|.++.++...| ..+ ++|++|+++ +|.+..++
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSL-HGL-FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTT-TTC-TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred ccCcccccEeeCCCCccCccChhhh-cCC-CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 3467888888888888887665455 444 555555554 44444333
Q ss_pred --cccCCCCccEEEccCCCCcc--c--ccc----cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce-eec---
Q psy11652 70 --NLNGFRSILWLNMDSNLLQT--L--DSL----PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--- 133 (325)
Q Consensus 70 --~~~~~~~L~~L~l~~~~~~~--~--~~l----~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--- 133 (325)
.|.++++|++|++++|.+.. + ..| .++|+.|++++|.+..+ ..+..+++|+.|++++|.+. .++
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence 34444555555554443211 1 111 24566666666666555 56677778888888888776 343
Q ss_pred CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCc---ccccCccCCccccEEEcccCCCcccChhhhhCccc
Q psy11652 134 IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQIS---KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS 209 (325)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 209 (325)
+..+++|++|++++|.+..+ +..|..+++|+.|++.+|.+. ..+..+..+++|+.|++++|.++.+++..|..++
T Consensus 426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~- 504 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE- 504 (680)
T ss_dssp GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-
T ss_pred ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc-
Confidence 55777888888888887776 667778888888888887765 3444455558999999999999988888888888
Q ss_pred cCCEEEccCCCCcCchH---------hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCC
Q psy11652 210 TLEFLDLENNRLTNINQ---------CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNK 278 (325)
Q Consensus 210 ~L~~L~l~~~~l~~~~~---------~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~ 278 (325)
+|+.|++++|.+..++. .+..+++|+.|++++|.++.+++..+.++++|+.|++++|.++.+|+ +..++
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence 99999999998875532 36788999999999999998888788999999999999999998887 78899
Q ss_pred CCCEEECCCCcCccccccccc-chhhhcccccccccceeec
Q psy11652 279 RLSHLNLGYNFLNELILESSI-VENEIIDQNMLFNSNAVME 318 (325)
Q Consensus 279 ~L~~L~l~~n~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 318 (325)
+|+.|++++|.++.+++.... ....+..+++..|.+.+-.
T Consensus 585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999999999999999887654 4556777888888885544
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.7e-29 Score=233.98 Aligned_cols=258 Identities=20% Similarity=0.253 Sum_probs=216.8
Q ss_pred cCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEc
Q psy11652 53 NKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVL 124 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l 124 (325)
++++.|+++++.+..+| .+.++++|++|++++|.+..+ ..| +++|+.|++++|.+..+ ..+.++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 79999999999999998 578899999999999999888 466 89999999999999888 56799999999999
Q ss_pred cCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCC-----
Q psy11652 125 SNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK----- 195 (325)
Q Consensus 125 ~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~----- 195 (325)
++|.++.+| +..+++|++|++++|.++.+ +..|.++++|+.|++++|.++.++.. ..++|+.|++++|.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCSEEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCcccccc
Confidence 999999888 46899999999999999988 77899999999999999998876432 23455555555544
Q ss_pred --------------CcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEE
Q psy11652 196 --------------ISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI 261 (325)
Q Consensus 196 --------------l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 261 (325)
++..+.. .. ++|+.|++++|.+... ..+..+++|+.|++++|.++++.+..++.+++|+.|
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~---~~-~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGP---VN-VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECS---CC-SCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred CCchhheeeccCCcccccccc---cC-CCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 4433221 12 3788888888888765 467889999999999999999888889999999999
Q ss_pred EccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeec
Q psy11652 262 SLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVME 318 (325)
Q Consensus 262 ~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (325)
++++|.++.+|. +..+++|+.|++++|.++.+|... .....+..+++..|.+..++
T Consensus 284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp ECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred ECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCcC
Confidence 999999999888 777899999999999999988764 34456778888899886654
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.3e-29 Score=234.62 Aligned_cols=266 Identities=19% Similarity=0.245 Sum_probs=147.3
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-c-cc--cCCccEEE
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-D-SL--PKTMETLS 101 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~-~l--~~~L~~L~ 101 (325)
++++|+++++.++.++...| ..+ ++|++|++++|.+..++ +|.++++|++|++++|.+..+ . .| +++|++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDL-RAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTT-SSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CccEEECcCCccCccChhhh-hcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 55555555555555544344 444 55555555555555544 455555555555555555544 2 23 55555555
Q ss_pred eecCcccch---hhhccCCCCCEEEccCCc-ceeec---CCCCCCccEEEccCCccccc-hhhc----------------
Q psy11652 102 VANNYLVNY---LELNRMTSLKWIVLSNNY-IKEFV---IPNRKHIEKLDLSNNLISTI-NLNL---------------- 157 (325)
Q Consensus 102 l~~~~l~~~---~~~~~~~~L~~L~l~~~~-~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~---------------- 157 (325)
+++|.+... ..+.++++|++|++++|. +..++ +..+++|++|++++|.++.. +..+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 555555432 344555555555555554 33333 33445555555555554443 3333
Q ss_pred --------cCCCCccEEEccCCcCcccc---cCccC--------------------------------------------
Q psy11652 158 --------NNTYYIKDLILSYNQISKLN---ANTFR-------------------------------------------- 182 (325)
Q Consensus 158 --------~~~~~L~~L~l~~~~l~~~~---~~~~~-------------------------------------------- 182 (325)
..+++|+.|++++|.+...+ .....
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 34667777777777665431 00000
Q ss_pred --------------------------------------------CccccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652 183 --------------------------------------------NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218 (325)
Q Consensus 183 --------------------------------------------~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 218 (325)
..+++.|++++|.++.++...+..++ +|+.|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~-~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT-TCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc-cccEEEccC
Confidence 02344444444444444443334565 777777777
Q ss_pred CCCcC-chH---hhhCCCCCCEEeCCCCccccccc--chhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCc
Q psy11652 219 NRLTN-INQ---CFRNLKKLKYLYLHNNNIEFIQN--NTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLN 291 (325)
Q Consensus 219 ~~l~~-~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~ 291 (325)
|.+.. +|. .+..+++|++|++++|.++++++ ..+..+++|+.|++++|+++.+|. +..+++|+.|++++|.++
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence 77663 222 25566777777777777766543 346667777777777777777776 666677777777777766
Q ss_pred ccccc
Q psy11652 292 ELILE 296 (325)
Q Consensus 292 ~~~~~ 296 (325)
.++..
T Consensus 424 ~l~~~ 428 (549)
T 2z81_A 424 VVKTC 428 (549)
T ss_dssp CCCTT
T ss_pred cccch
Confidence 65543
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.7e-29 Score=218.72 Aligned_cols=257 Identities=23% Similarity=0.336 Sum_probs=221.8
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-ccccCCccEEEee
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVA 103 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~ 103 (325)
+++++|+++++.++.++...| ..+ ++|++|++++|.++.++ .+.++++|++|++++|.+..+ ..+.++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDF-KGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTC-TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHh-hCC-CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECC
Confidence 489999999999999987678 777 99999999999999884 899999999999999999887 4457999999999
Q ss_pred cCcccch--hhhccCCCCCEEEccCCccee--e-c--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCccc
Q psy11652 104 NNYLVNY--LELNRMTSLKWIVLSNNYIKE--F-V--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL 176 (325)
Q Consensus 104 ~~~l~~~--~~~~~~~~L~~L~l~~~~~~~--~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 176 (325)
+|.+..+ ..+.++++|++|++++|.++. + + +..+ +|++|++++|.++.+|..+. ++|+.|++++|.++.+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAI 208 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCcc
Confidence 9999888 568999999999999999863 2 2 3344 99999999999998865543 7899999999999987
Q ss_pred ccCcc-CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc-
Q psy11652 177 NANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH- 254 (325)
Q Consensus 177 ~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~- 254 (325)
++..+ ..++|+.|++++|.+++.++..+..++ +|+.|++++|.+..+|..+..+++|++|++++|.++.++...+..
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 75444 459999999999999999888899998 999999999999999988999999999999999999887766654
Q ss_pred -----CccCCEEEccCCCCc--ccCC--CCCCCCCCEEECCCCc
Q psy11652 255 -----LVNLKSISLSGNKLT--RIPD--FIHNKRLSHLNLGYNF 289 (325)
Q Consensus 255 -----~~~L~~L~l~~n~l~--~l~~--~~~~~~L~~L~l~~n~ 289 (325)
.+.|+.+++.+|.+. .+++ +..+++|+.+++++|+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367899999999998 5555 8899999999999875
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=228.45 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=64.1
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCcccccc-cCCccEEEee
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTLDSL-PKTMETLSVA 103 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l-~~~L~~L~l~ 103 (325)
+++++|++++|.++.++...| ..+ ++|++|++++|.++.++ .|.++++|++|++++|.+..++.. +++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~-~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDI-LSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHH-TTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhc-ccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEecc
Confidence 566666666666666654345 444 66666666666666653 566666666666666666655222 6666666666
Q ss_pred cCcccch---hhhccCCCCCEEEccCCcce
Q psy11652 104 NNYLVNY---LELNRMTSLKWIVLSNNYIK 130 (325)
Q Consensus 104 ~~~l~~~---~~~~~~~~L~~L~l~~~~~~ 130 (325)
+|.+..+ ..+.++++|++|++++|.+.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCccccccchhhhccCCcceEEEecCcccc
Confidence 6666553 45666666666666666654
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=7.1e-29 Score=231.27 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=90.8
Q ss_pred hhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc---ccc--cC
Q psy11652 23 QISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL---DSL--PK 95 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~---~~l--~~ 95 (325)
...+++|++|++++|.++.++...| ..+ ++|++|++++|.+..++ .+.++++|++|++++|.+..+ ..+ ++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAF-YSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTT-TTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhcCCcccEEECCCCCcCccChhhc-ccc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 4588999999999999999987678 777 89999999999999887 599999999999999998864 445 88
Q ss_pred CccEEEeecCc-ccch--hhhccCCCCCEEEccCCccee
Q psy11652 96 TMETLSVANNY-LVNY--LELNRMTSLKWIVLSNNYIKE 131 (325)
Q Consensus 96 ~L~~L~l~~~~-l~~~--~~~~~~~~L~~L~l~~~~~~~ 131 (325)
+|++|++++|. +..+ ..+.++++|++|++++|.++.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 99999999987 4444 467888888888888887764
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.1e-28 Score=231.10 Aligned_cols=290 Identities=24% Similarity=0.325 Sum_probs=195.2
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCc---------cc--ccc
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQ---------TL--DSL 93 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~---------~~--~~l 93 (325)
++|++|++++|.++.++...| ..+ ++|++|++++|.+..++ .+.++++|++|+++++... .+ ..|
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSF-AWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTT-TTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCCCEEECCCCCcCccCcccc-cCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 459999999999999987677 777 99999999999998765 7888999999999876433 11 134
Q ss_pred --cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcce--eec---CC--CCCCccEEEccCCccccc-hhhccCCC
Q psy11652 94 --PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIK--EFV---IP--NRKHIEKLDLSNNLISTI-NLNLNNTY 161 (325)
Q Consensus 94 --~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~--~~~---~~--~~~~L~~L~l~~~~~~~~-~~~~~~~~ 161 (325)
+++|+.|++++|.+..+ ..+.++++|++|++++|.+. .++ +. ..++|+.|++++|.++.+ +..|.+++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 78888888888877776 45677777777777766432 222 00 113455555555554444 44444445
Q ss_pred CccEEEccCCc-------------------------CcccccCccCC-ccccEEEcccCCCc--ccChhhhhCccccCCE
Q psy11652 162 YIKDLILSYNQ-------------------------ISKLNANTFRN-LNVFRLYLKFNKIS--EIHDFAFNGLNSTLEF 213 (325)
Q Consensus 162 ~L~~L~l~~~~-------------------------l~~~~~~~~~~-~~L~~L~l~~~~l~--~~~~~~~~~~~~~L~~ 213 (325)
+|+.|++++|. +..+.+..+.. ++|+.|++++|.+. +..+..+..++ +|+.
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~ 484 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTI 484 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCE
Confidence 55555555444 44333333322 55555555555443 22344566666 7777
Q ss_pred EEccCCCCcCchH-hhhCCCCCCEEeCCCCccccccc--------chhccCccCCEEEccCCCCcccCC--CCCCCCCCE
Q psy11652 214 LDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQN--------NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSH 282 (325)
Q Consensus 214 L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~--------~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~ 282 (325)
|++++|.+..++. .+..+++|++|++++|.++++.. ..+.++++|+.|++++|.++.+|. +..+++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 7777777776654 56777778888888777765422 235667788888888888887776 778888888
Q ss_pred EECCCCcCcccccccccchhhhcccccccccceeecc
Q psy11652 283 LNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMED 319 (325)
Q Consensus 283 L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (325)
|++++|.++.+++..+.....+..+++..|++..++.
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 8888888888888766666677777888887766553
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.6e-28 Score=227.12 Aligned_cols=288 Identities=17% Similarity=0.124 Sum_probs=192.1
Q ss_pred hhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCccc---ccc--cCC
Q psy11652 22 VQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL---DSL--PKT 96 (325)
Q Consensus 22 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l--~~~ 96 (325)
....+++|++|++++|.++.++...| ..+ ++|++|++++|.++.+|.. .+++|++|++++|.+..+ ..| +++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVF-LFN-QDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTT-TTC-TTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred hhccCCCccEEECCCCCCCcCCHHHh-CCC-CCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCc
Confidence 44588899999999999999977678 777 8999999999999998844 899999999999998876 356 899
Q ss_pred ccEEEeecCcccchhhhccCCCC--CEEEccCCcc--eee-c--CC--------------------------CC------
Q psy11652 97 METLSVANNYLVNYLELNRMTSL--KWIVLSNNYI--KEF-V--IP--------------------------NR------ 137 (325)
Q Consensus 97 L~~L~l~~~~l~~~~~~~~~~~L--~~L~l~~~~~--~~~-~--~~--------------------------~~------ 137 (325)
|++|++++|.+... .+..+++| ++|++++|.+ +.. | +. .+
T Consensus 148 L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 226 (562)
T 3a79_B 148 LTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226 (562)
T ss_dssp CCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred ccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence 99999999887653 33444444 7777777765 210 0 00 11
Q ss_pred -------------------------------------------------CCccEEEccCCcccc-chhhc----------
Q psy11652 138 -------------------------------------------------KHIEKLDLSNNLIST-INLNL---------- 157 (325)
Q Consensus 138 -------------------------------------------------~~L~~L~l~~~~~~~-~~~~~---------- 157 (325)
.+|++|++++|.+++ +|..+
T Consensus 227 ~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence 145555555555442 22222
Q ss_pred -------------------------------------------cCCCCccEEEccCCcCcc-cccCccCCccccEEEccc
Q psy11652 158 -------------------------------------------NNTYYIKDLILSYNQISK-LNANTFRNLNVFRLYLKF 193 (325)
Q Consensus 158 -------------------------------------------~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~ 193 (325)
..+++|+.|++++|.++. .+..+...++|+.|++++
T Consensus 307 L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred eehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 445566666666666654 233333346666666666
Q ss_pred CCCcccCh--hhhhCccccCCEEEccCCCCcC-chH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652 194 NKISEIHD--FAFNGLNSTLEFLDLENNRLTN-INQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 194 ~~l~~~~~--~~~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
|.+++++. ..+..++ +|+.|++++|.+.. +|. .+..+++|++|++++|.+++..+..+. ++|+.|++++|+++
T Consensus 387 N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp SCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred CCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 66665432 3455665 66666666666664 554 355666666667666666543332222 57778888888877
Q ss_pred ccCC-CCCCCCCCEEECCCCcCcccccccccchhhhccccccccccee
Q psy11652 270 RIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAV 316 (325)
Q Consensus 270 ~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (325)
.+|. +..+++|+.|++++|+++.+|+........+..+++..|.+.+
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 7776 5577888888888888887777644444556667777777643
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.4e-27 Score=217.12 Aligned_cols=205 Identities=24% Similarity=0.348 Sum_probs=129.5
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV 102 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l 102 (325)
.+++|++|+++++.++.+| .+ ..+ ++|++|++++|.+++++ +..+++|++|++++|.+..++ + +++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~--~l-~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT--GI-EKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT--TG-GGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccCh--hh-ccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 6778888888888888776 35 555 78888888888888775 777888888888888777663 4 778888888
Q ss_pred ecCcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCc-cccchhhccCCCCccEEEccCCcCcccccCcc
Q psy11652 103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNL-ISTINLNLNNTYYIKDLILSYNQISKLNANTF 181 (325)
Q Consensus 103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 181 (325)
++|.++.+. +..+++|++|++++|.++.++...+++|++|++++|. ++.+ .+..+++|+.|++++|.++.++ +.
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~ 188 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VS 188 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CT
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cc
Confidence 888776653 6677777777777777776665556666666666663 2222 2445555555555555555543 22
Q ss_pred CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccc
Q psy11652 182 RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEF 246 (325)
Q Consensus 182 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~ 246 (325)
..++|+.|++++|.+++. .+..++ +|+.|++++|.+..+| +..+++|+.|++++|.+++
T Consensus 189 ~l~~L~~L~l~~N~l~~~---~l~~l~-~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKL---DLNQNI-QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TCTTCCEEECCSSCCSCC---CCTTCT-TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred cCCCCCEEECcCCcCCee---ccccCC-CCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 335555555555555444 133444 5555555555554443 4444445555555444443
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=237.44 Aligned_cols=267 Identities=21% Similarity=0.255 Sum_probs=152.7
Q ss_pred ccccceEEcCCCceeeecCCCcCcccccCccEEECCCC-ccccc-c-cccCCCCccEEEccCCCCccc--ccc--cCCcc
Q psy11652 26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGEN-HIHQI-E-NLNGFRSILWLNMDSNLLQTL--DSL--PKTME 98 (325)
Q Consensus 26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~ 98 (325)
.+++++|++++|.|+.++...| ..+ ++|++|++++| .+..+ | +|.++++|++|++++|.+..+ ..| +++|+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~-~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSF-PFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSC-SSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCcCEEECCCCcCCccChhHC-ccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 3567777777777776665566 555 67777777766 33344 2 667777777777777776665 444 67777
Q ss_pred EEEeecCcccch--h--hhccCCCCCEEEccCCcceeec----CCCCCCccEEEccCCccccc-hhhccCC--CC-----
Q psy11652 99 TLSVANNYLVNY--L--ELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNNLISTI-NLNLNNT--YY----- 162 (325)
Q Consensus 99 ~L~l~~~~l~~~--~--~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~----- 162 (325)
+|++++|.+... . .+.++++|++|++++|.++.++ +..+++|++|++++|.++.. +..+..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 777777766552 2 3666777777777777666432 44666777777777666554 3333333 34
Q ss_pred -------------------------ccEEEccCCcCcc-cccCc-----------------------------------c
Q psy11652 163 -------------------------IKDLILSYNQISK-LNANT-----------------------------------F 181 (325)
Q Consensus 163 -------------------------L~~L~l~~~~l~~-~~~~~-----------------------------------~ 181 (325)
|+.|++++|.+.. .+..+ +
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 4555555543321 00000 0
Q ss_pred -C--CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchhccCcc
Q psy11652 182 -R--NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257 (325)
Q Consensus 182 -~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 257 (325)
. .++++.|++++|.+....+..|..++ +|+.|++++|.+..++ ..+..+++|++|++++|.++++.+..+.++++
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 0 13455555555555555555555555 5566666555555332 34555555666666666555555555555556
Q ss_pred CCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 258 L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
|+.|++++|.+..+++ +..+++|+.|++++|.++.++.
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 6666666665555544 5555566666666665555443
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.1e-28 Score=213.89 Aligned_cols=268 Identities=18% Similarity=0.239 Sum_probs=225.8
Q ss_pred hhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCC
Q psy11652 23 QISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKT 96 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~ 96 (325)
...|+.....+++++.++.+|. .+ .++|++|++++|.++.++ .+.++++|++|++++|.+..+ ..| +++
T Consensus 27 ~~~C~~~~~c~~~~~~l~~iP~-~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSIPS-GL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp CCEECTTSEEECCSTTCSSCCT-TC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCCCeEeeCCCCCcccccc-cc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 3467777778999999999998 44 379999999999999988 699999999999999999888 456 899
Q ss_pred ccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec----CCCCCCccEEEccCC-ccccc-hhhccCCCCccEEEc
Q psy11652 97 METLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNN-LISTI-NLNLNNTYYIKDLIL 168 (325)
Q Consensus 97 L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~L~~L~l 168 (325)
|++|++++|.++.+ ..+.++++|++|++++|.++.++ +..+++|++|++++| .++.+ +..+.++++|+.|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 99999999999888 45899999999999999998776 457899999999998 47777 778999999999999
Q ss_pred cCCcCcccccC-ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH----hhhCCCCCCEEeCCCCc
Q psy11652 169 SYNQISKLNAN-TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ----CFRNLKKLKYLYLHNNN 243 (325)
Q Consensus 169 ~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~ 243 (325)
++|.+..+.+. +...++|+.|++++|.++..+...+..++ +|+.|++++|.+..++. .....+.++.+++.++.
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc-cccEEECCCCccccccccccccccccchhhcccccccc
Confidence 99999877444 44459999999999999887766666677 99999999999885442 23456778889998887
Q ss_pred cccc----ccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccc
Q psy11652 244 IEFI----QNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILE 296 (325)
Q Consensus 244 l~~~----~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~ 296 (325)
+.+. .+..+..+++|+.|++++|+++.+|. +..+++|+.|++++|++....+.
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 7652 23367788999999999999999998 68999999999999999887653
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.3e-28 Score=235.36 Aligned_cols=286 Identities=24% Similarity=0.260 Sum_probs=219.2
Q ss_pred hcccccceEEcCCC-ceeeecCCCcCcccccCccEEECCCCccccc-c-cccCCCCccEEEccCCCCccc--cc--c--c
Q psy11652 24 ISCILLMSAENEDN-QIAELETANWSPEIQNKLTTLFIGENHIHQI-E-NLNGFRSILWLNMDSNLLQTL--DS--L--P 94 (325)
Q Consensus 24 ~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~--~~--l--~ 94 (325)
..+++|++|++++| .+..++...| ..+ ++|++|+|++|.+..+ | .|.++++|++|++++|.+... .. | +
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f-~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAF-RNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTT-SSC-TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred cccccCeEEeCCCCCCccccCHHHh-cCC-CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 46777888888777 4446655566 666 7888888888877766 3 777788888888888777653 22 4 7
Q ss_pred CCccEEEeecCcccch---hhhccCCCCCEEEccCCcceeec-----------------------------CCCCC----
Q psy11652 95 KTMETLSVANNYLVNY---LELNRMTSLKWIVLSNNYIKEFV-----------------------------IPNRK---- 138 (325)
Q Consensus 95 ~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~-----------------------------~~~~~---- 138 (325)
++|++|++++|.+... ..+.++++|++|++++|.++.+. +..+.
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 7788888888777665 45777778888887777654211 11112
Q ss_pred --CccEEEccCCccccc-hhh------------------------------------ccC--CCCccEEEccCCcCcccc
Q psy11652 139 --HIEKLDLSNNLISTI-NLN------------------------------------LNN--TYYIKDLILSYNQISKLN 177 (325)
Q Consensus 139 --~L~~L~l~~~~~~~~-~~~------------------------------------~~~--~~~L~~L~l~~~~l~~~~ 177 (325)
.|+.|++++|.++.. +.. |.+ .++|+.|++++|.+..+.
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 388899988865432 111 222 267999999999998776
Q ss_pred cCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccC
Q psy11652 178 ANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255 (325)
Q Consensus 178 ~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 255 (325)
+..+.. ++|+.|++++|.++...+..|..++ +|+.|++++|.+..+ +..+..+++|++|++++|.+..+++..+..+
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 665554 9999999999999999888999998 999999999999866 5588999999999999999999988889999
Q ss_pred ccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceeecc
Q psy11652 256 VNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMED 319 (325)
Q Consensus 256 ~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (325)
++|+.|++++|.++.++. +++|+.+++++|+++.++... .....+++..|.+..++.
T Consensus 362 ~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~l~~~~----~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKIN----LTANLIHLSENRLENLDI 418 (844)
T ss_dssp CCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCCCCCCC----TTCCEEECCSCCCCSSTT
T ss_pred CCCCEEECCCCCCCcccC---CCCcchhccCCCCcccccccc----cccceeecccCccccCch
Confidence 999999999999997663 788999999999999887652 345567788888876654
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.6e-28 Score=224.87 Aligned_cols=286 Identities=19% Similarity=0.223 Sum_probs=210.2
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEE
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETL 100 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L 100 (325)
+.+++|+++++.++.++...| ..+ ++|++|++++|.+..++ .|.++++|++|++++|.+..+ ..| +++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSF-FSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTT-TTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHh-hCC-CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 478999999999998887677 777 89999999999988886 788999999999999988877 456 8999999
Q ss_pred EeecCcccch--hhhccCCCCCEEEccCCccee--ec--CCCCCCccEEEccCCccccc-hhhccCCCCc----cEEEcc
Q psy11652 101 SVANNYLVNY--LELNRMTSLKWIVLSNNYIKE--FV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYI----KDLILS 169 (325)
Q Consensus 101 ~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~--~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L----~~L~l~ 169 (325)
++++|.+..+ ..+.++++|++|++++|.+.. +| +..+++|++|++++|.++.+ +..++.+.+| +.+++.
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 9999988887 358889999999999998875 45 56788999999999998887 6677777777 788999
Q ss_pred CCcCcccccCccCCccccEEEcccCC------------------------------------------------------
Q psy11652 170 YNQISKLNANTFRNLNVFRLYLKFNK------------------------------------------------------ 195 (325)
Q Consensus 170 ~~~l~~~~~~~~~~~~L~~L~l~~~~------------------------------------------------------ 195 (325)
+|.+..+++..+...+|+.|++++|.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 88888777776666677888777652
Q ss_pred ----CcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchh-------------------
Q psy11652 196 ----ISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF------------------- 252 (325)
Q Consensus 196 ----l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l------------------- 252 (325)
+.+..+..+..++ +++.++++++.+..+|..+..+ +|++|++.+|.+..++...+
T Consensus 266 ~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLT-NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp ETTEEESCSTTTTGGGT-TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred cchhhhhhchhhhcCcC-cccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence 1122234455566 8888888888777777766666 77777777777665443211
Q ss_pred ccCccCCEEEccCCCCccc---CC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652 253 EHLVNLKSISLSGNKLTRI---PD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM 317 (325)
Q Consensus 253 ~~~~~L~~L~l~~n~l~~l---~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (325)
..+++|+.|++++|.++.+ +. +..+++|+.|++++|.++.+++. .....++..+++..|.+...
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 3445666666666666543 22 55566666666666666666655 33344555666666666543
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9e-27 Score=220.39 Aligned_cols=135 Identities=20% Similarity=0.273 Sum_probs=111.5
Q ss_pred ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc--CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEE
Q psy11652 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT--NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI 261 (325)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 261 (325)
.+++.++++.|.+....+..+..++ .++.|++++|... ..|..+..+++|++|++++|+++++++..+.++++|+.|
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 5666777777777777777777777 8999999988643 345578889999999999999999988889999999999
Q ss_pred EccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccch-hhhcccccccccceeecc
Q psy11652 262 SLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVE-NEIIDQNMLFNSNAVMED 319 (325)
Q Consensus 262 ~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 319 (325)
++++|+++.+++ +..+++|++|++++|+|++++++..... ..+..+++..|.+.+-.+
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999998876 8899999999999999999998876543 567778889998866443
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4e-26 Score=207.50 Aligned_cols=254 Identities=22% Similarity=0.299 Sum_probs=168.0
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS 101 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~ 101 (325)
..+++|++|++++|.++.++ + ..+ ++|++|++++|.++.++ +.++++|++|++++|.+..++ + +++|+.|+
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~---~-~~l-~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~ 133 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD---L-SQN-TNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLN 133 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC---C-TTC-TTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred cccCCCCEEEccCCcCCeEc---c-ccC-CCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEE
Confidence 47889999999999988876 4 556 88999999999888875 778888999999988887764 4 78888888
Q ss_pred eecCcccchhhhccCCCCCEEEccCC-cceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652 102 VANNYLVNYLELNRMTSLKWIVLSNN-YIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT 180 (325)
Q Consensus 102 l~~~~l~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 180 (325)
+++|.++.+ .+..+++|++|++++| .+..+++..+++|++|++++|.++.++ +..+++|+.|++.+|.++.++ +
T Consensus 134 l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l 208 (457)
T 3bz5_A 134 CARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--L 208 (457)
T ss_dssp CTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--C
T ss_pred CCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--c
Confidence 888877765 3566677777777766 333445556666666666666666654 555666666666666655542 3
Q ss_pred cCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-h-----------------------------hhC
Q psy11652 181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-C-----------------------------FRN 230 (325)
Q Consensus 181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~-----------------------------~~~ 230 (325)
...++|+.|++++|.+++++ +..++ +|+.|++++|.+..+|. . +..
T Consensus 209 ~~l~~L~~L~Ls~N~l~~ip---~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~ 284 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLTEID---VTPLT-QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEG 284 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred ccCCCCCEEECcCCcccccC---ccccC-CCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccc
Confidence 33456666666666665543 44555 56666666665554331 1 223
Q ss_pred CCCCCEEeCCCCccccccc--------chhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccc
Q psy11652 231 LKKLKYLYLHNNNIEFIQN--------NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELI 294 (325)
Q Consensus 231 ~~~L~~L~l~~~~l~~~~~--------~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~ 294 (325)
+++|+.|++++|...+..+ ..+.++++|+.|++++|+++.++ +..+++|+.|++++|++++++
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCSEEECCSSCCCBCT
T ss_pred cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-cccCCcCcEEECCCCCCCCcc
Confidence 4555555555554322111 12445567777777777777764 777778888888888877754
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8.8e-27 Score=211.33 Aligned_cols=239 Identities=22% Similarity=0.291 Sum_probs=201.7
Q ss_pred hccc-ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCC
Q psy11652 24 ISCI-LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKT 96 (325)
Q Consensus 24 ~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~ 96 (325)
+.|. ....+++++..++.+|. .+ .++++.|+|++|.+..++ .|.++++|++|++++|.+..+ ..| +++
T Consensus 39 C~C~~~~~~v~c~~~~l~~iP~-~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 39 CSCSNQFSKVICVRKNLREVPD-GI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp SEECTTSCEEECCSCCCSSCCS-CC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CEeCCCCCEEEeCCCCcCcCCC-CC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence 4454 46789999999999998 45 378999999999999887 899999999999999999887 456 899
Q ss_pred ccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCC-ccccc-hhhccCCCCccEEEcc
Q psy11652 97 METLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNN-LISTI-NLNLNNTYYIKDLILS 169 (325)
Q Consensus 97 L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~L~~L~l~ 169 (325)
|+.|++++|.++.+ ..+..+++|++|++++|.++.++ +..+++|++|+++++ .+..+ +..|.++++|+.|+++
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 99999999998888 56889999999999999998777 567889999999884 45556 5678889999999999
Q ss_pred CCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccc
Q psy11652 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQ 248 (325)
Q Consensus 170 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~ 248 (325)
+|.++.++. +...++|+.|++++|.++...+..|..++ +|+.|++++|.+..++. .+..+++|+.|++++|.++.++
T Consensus 194 ~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 194 MCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp TSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CCcCccccc-cCCCcccCEEECCCCccCccChhhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 998887764 45558899999999998888888888888 89999999888886544 6778888889999888888888
Q ss_pred cchhccCccCCEEEccCCCCc
Q psy11652 249 NNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 249 ~~~l~~~~~L~~L~l~~n~l~ 269 (325)
+..+..+++|+.|++++|.+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 877888888888888888664
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.4e-27 Score=202.15 Aligned_cols=236 Identities=19% Similarity=0.227 Sum_probs=151.4
Q ss_pred cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc----ccc--cCCccEE
Q psy11652 29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL----DSL--PKTMETL 100 (325)
Q Consensus 29 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~----~~l--~~~L~~L 100 (325)
.+.++++++.++.+|. .+ +++|++|++++|.++.+| .|.++++|++|++++|.+... ..+ +++|++|
T Consensus 9 ~~~l~c~~~~l~~ip~-~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPT-GI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TTEEECCSSCCSSCCS-CC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred CCEEEcCCCCcccCCC-CC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 4678999999999998 44 378999999999999888 578999999999999887654 112 5666666
Q ss_pred EeecCcccch-hhhccCCCCCEEEccCCcceeec----CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCc
Q psy11652 101 SVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQIS 174 (325)
Q Consensus 101 ~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~ 174 (325)
++++|.+..+ ..+..+++|++|++++|.++.++ +..+++|++|++++|.+... +..+..+++
T Consensus 84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------ 151 (306)
T 2z66_A 84 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------------ 151 (306)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT------------
T ss_pred ECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC------------
Confidence 6666665555 44555566666666665555433 23444555555555544443 334444444
Q ss_pred ccccCccCCccccEEEcccCCCcc-cChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchh
Q psy11652 175 KLNANTFRNLNVFRLYLKFNKISE-IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTF 252 (325)
Q Consensus 175 ~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l 252 (325)
|+.|++++|.+++ ..+..+..++ +|+.|++++|.+..+ +..+..+++|++|++++|.++++++..+
T Consensus 152 -----------L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 152 -----------LEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp -----------CCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred -----------CCEEECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 4455555444443 2233444555 666666666666544 3355666666777777776666666566
Q ss_pred ccCccCCEEEccCCCCcccCC--CCCC-CCCCEEECCCCcCccc
Q psy11652 253 EHLVNLKSISLSGNKLTRIPD--FIHN-KRLSHLNLGYNFLNEL 293 (325)
Q Consensus 253 ~~~~~L~~L~l~~n~l~~l~~--~~~~-~~L~~L~l~~n~i~~~ 293 (325)
..+++|+.|++++|.++..++ +..+ ++|+.|++++|+++..
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 667777777777777775433 5555 3777777777777654
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.8e-27 Score=206.12 Aligned_cols=245 Identities=17% Similarity=0.143 Sum_probs=150.1
Q ss_pred hhhhccc------ccceEEcCCCcee---eecCCCcCcccccCccEEECCC-Cccc-ccc-cccCCCCccEEEccCCCCc
Q psy11652 21 NVQISCI------LLMSAENEDNQIA---ELETANWSPEIQNKLTTLFIGE-NHIH-QIE-NLNGFRSILWLNMDSNLLQ 88 (325)
Q Consensus 21 ~~~~~~~------~L~~L~l~~~~i~---~~~~~~~~~~~~~~L~~L~l~~-~~~~-~~~-~~~~~~~L~~L~l~~~~~~ 88 (325)
|.++.|. ++++|+++++.++ .+|. .+ ..+ ++|++|++++ +.+. .+| .+.++++|++|++++|.+.
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l-~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 114 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SL-ANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GG-GGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccCh-hH-hCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC
Confidence 7777773 4666666666555 2443 44 444 5666666653 4444 233 4555555555555555444
Q ss_pred ccccccCCccEEEeecCcccch-hhhccCCCCCEEEccCCcce-eec--CCCCCCccEEEccCCccccc-hhhccCCC-C
Q psy11652 89 TLDSLPKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTY-Y 162 (325)
Q Consensus 89 ~~~~l~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-~ 162 (325)
.. . ..+.++++|++|++++|.++ .+| +..+++|++|++++|.+++. |..+..++ +
T Consensus 115 ~~-------------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 115 GA-------------------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp EE-------------------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred Cc-------------------CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhc
Confidence 22 1 34445555555555555555 333 34455555566665555533 55555555 6
Q ss_pred ccEEEccCCcCcc-cccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCC
Q psy11652 163 IKDLILSYNQISK-LNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHN 241 (325)
Q Consensus 163 L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 241 (325)
|+.|++++|.+.. ++..+...+ |+.|++++|.+++..+..+..++ +|+.|++++|.+...+..+..+++|++|++++
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC-CCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence 6666666666653 332222223 77777777777666666677776 77777777777775544566777888888888
Q ss_pred CcccccccchhccCccCCEEEccCCCCc-ccCCCCCCCCCCEEECCCCc
Q psy11652 242 NNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFIHNKRLSHLNLGYNF 289 (325)
Q Consensus 242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~~~~~~~L~~L~l~~n~ 289 (325)
|.+++..+..+..+++|+.|++++|.++ .+|....+++|+.+++.+|+
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 8877666667777788888888888887 55656677788888888876
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.9e-26 Score=209.81 Aligned_cols=239 Identities=21% Similarity=0.285 Sum_probs=195.0
Q ss_pred hccc-ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCC
Q psy11652 24 ISCI-LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKT 96 (325)
Q Consensus 24 ~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~ 96 (325)
+.|. ....+++++..++.+|. .+ .+++++|+|++|.+..++ .|.++++|++|++++|.+..+ ..| +++
T Consensus 50 C~C~~~~~~v~c~~~~l~~iP~-~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 50 CSCSNQFSKVVCTRRGLSEVPQ-GI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SEECSSSCEEECCSSCCSSCCS-CC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEECCCCcEEEECCCCcCccCC-CC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 4454 46789999999999998 45 378999999999999886 899999999999999998887 456 899
Q ss_pred ccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccC-Cccccc-hhhccCCCCccEEEcc
Q psy11652 97 METLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSN-NLISTI-NLNLNNTYYIKDLILS 169 (325)
Q Consensus 97 L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~-~~~~~~-~~~~~~~~~L~~L~l~ 169 (325)
|+.|++++|.+..+ ..+..+++|++|++++|.++.++ +..+++|++|++++ +.+..+ +..|.++++|+.|+++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 99999999988887 55888999999999999988777 56788999999987 455556 5568888899999999
Q ss_pred CCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccc
Q psy11652 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQ 248 (325)
Q Consensus 170 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~ 248 (325)
+|.++.++. +...++|+.|++++|.+++..+..|..++ +|+.|++++|.+..++ ..+..+++|+.|++++|.++.++
T Consensus 205 ~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 205 MCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp TSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccccccc-ccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 888887753 44558888888888888888778888887 8888888888887553 46777888888888888888877
Q ss_pred cchhccCccCCEEEccCCCCc
Q psy11652 249 NNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 249 ~~~l~~~~~L~~L~l~~n~l~ 269 (325)
+..+..+++|+.|++++|.+.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 777777888888888887654
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2e-27 Score=205.85 Aligned_cols=235 Identities=20% Similarity=0.230 Sum_probs=192.3
Q ss_pred CCccEEEccCCCCcc---c-ccc--cCCccEEEeec-Ccccch--hhhccCCCCCEEEccCCcce-eec--CCCCCCccE
Q psy11652 75 RSILWLNMDSNLLQT---L-DSL--PKTMETLSVAN-NYLVNY--LELNRMTSLKWIVLSNNYIK-EFV--IPNRKHIEK 142 (325)
Q Consensus 75 ~~L~~L~l~~~~~~~---~-~~l--~~~L~~L~l~~-~~l~~~--~~~~~~~~L~~L~l~~~~~~-~~~--~~~~~~L~~ 142 (325)
.+++.|+++++.+.. + ..| +++|++|++++ |.+... ..+.++++|++|++++|.++ .+| +..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 345566666665553 2 344 67777777773 666544 67888999999999999998 666 678999999
Q ss_pred EEccCCccccc-hhhccCCCCccEEEccCCcCc-ccccCccCCc-cccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652 143 LDLSNNLISTI-NLNLNNTYYIKDLILSYNQIS-KLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219 (325)
Q Consensus 143 L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 219 (325)
|++++|.++.. |..+..+++|+.|++.+|.++ .++..+...+ +|+.|++++|.+++..+..+..+ .|+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccEEECcCC
Confidence 99999999965 889999999999999999998 6777777775 99999999999997777778776 4999999999
Q ss_pred CCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEEECCCCcCcccccc
Q psy11652 220 RLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHLNLGYNFLNELILE 296 (325)
Q Consensus 220 ~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~i~~~~~~ 296 (325)
.+. ..|..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.++ .+|. +..+++|+.|++++|++++..+.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 988 5667889999999999999999876664 777899999999999999 6776 99999999999999999965555
Q ss_pred cccchhhhccccccccc
Q psy11652 297 SSIVENEIIDQNMLFNS 313 (325)
Q Consensus 297 ~~~~~~~~~~~~~~~~~ 313 (325)
. ....++..+++..|+
T Consensus 287 ~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp S-TTGGGSCGGGTCSSS
T ss_pred C-ccccccChHHhcCCC
Confidence 4 344556667777777
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.6e-26 Score=206.89 Aligned_cols=244 Identities=23% Similarity=0.334 Sum_probs=161.2
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCc
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~ 106 (325)
++|++|++++|.++.++. ..++|++|++++|.++.+|.+.++++|++|++++|.+..++..+.+|+.|++++|.
T Consensus 111 ~~L~~L~l~~n~l~~l~~------~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 184 (454)
T ss_dssp TTCCEEECCSSCCSCCCS------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCcEEECCCCccCcccC------CCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCc
Confidence 344555555554444333 22578888888888888878888888999999888887765556788899998888
Q ss_pred ccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccc
Q psy11652 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNV 186 (325)
Q Consensus 107 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 186 (325)
+..++.+.++++|++|++++|.++.+|. ...+|++|++++|.++.+| .+..+++|+.|++++|.++.++.. .++|
T Consensus 185 l~~l~~~~~l~~L~~L~l~~N~l~~l~~-~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L 259 (454)
T 1jl5_A 185 LEELPELQNLPFLTAIYADNNSLKKLPD-LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSL 259 (454)
T ss_dssp CSSCCCCTTCTTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTC
T ss_pred CCcCccccCCCCCCEEECCCCcCCcCCC-CcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc---cccc
Confidence 8777678888899999999888887762 1358888999888888766 378888899999988888776542 2678
Q ss_pred cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652 187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266 (325)
Q Consensus 187 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 266 (325)
+.|++++|.+++++. ..+ +|+.|++++|.+..++.. .++|+.|++++|.+++++. + .++|+.|++++|
T Consensus 260 ~~L~l~~N~l~~l~~----~~~-~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~--~--~~~L~~L~Ls~N 327 (454)
T 1jl5_A 260 EALNVRDNYLTDLPE----LPQ-SLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCD--L--PPSLEELNVSNN 327 (454)
T ss_dssp CEEECCSSCCSCCCC----CCT-TCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECC--C--CTTCCEEECCSS
T ss_pred CEEECCCCcccccCc----ccC-cCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccC--C--cCcCCEEECCCC
Confidence 888888888776542 123 677777777766654321 1345555555554444321 0 124455555555
Q ss_pred CCcccCCCCCCCCCCEEECCCCcCccccc
Q psy11652 267 KLTRIPDFIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 267 ~l~~l~~~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
+++.+|.. +++|+.|++++|.++.+|.
T Consensus 328 ~l~~lp~~--~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 328 KLIELPAL--PPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CCSCCCCC--CTTCCEEECCSSCCSCCCC
T ss_pred cccccccc--CCcCCEEECCCCccccccc
Confidence 54444431 2444445554444444443
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=8.4e-26 Score=213.74 Aligned_cols=289 Identities=21% Similarity=0.243 Sum_probs=205.3
Q ss_pred ccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEE
Q psy11652 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLS 101 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~ 101 (325)
.+++||+++|.|+.++...| ..+ ++|++|+|++|.++.++ +|.++++|++|++++|++..+ ..| +++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f-~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSF-FSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTT-TTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHH-hCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 67888888888888887777 777 88888888888888876 688888888888888888777 445 78888888
Q ss_pred eecCcccch--hhhccCCCCCEEEccCCcceee--c--CCCCCCccEEEccCCccccc-hhhccC---------------
Q psy11652 102 VANNYLVNY--LELNRMTSLKWIVLSNNYIKEF--V--IPNRKHIEKLDLSNNLISTI-NLNLNN--------------- 159 (325)
Q Consensus 102 l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~L~~L~l~~~~~~~~-~~~~~~--------------- 159 (325)
+++|.++.+ ..++++++|++|++++|.++.+ | +..+++|++|++++|.++.+ +..+..
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 888888777 4578888888888888887643 3 44677788888877765443 221110
Q ss_pred --------------------------------------------------------------------------------
Q psy11652 160 -------------------------------------------------------------------------------- 159 (325)
Q Consensus 160 -------------------------------------------------------------------------------- 159 (325)
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred ------------------------------------CCCccEEEccCCcCccccc--------------------CccCC
Q psy11652 160 ------------------------------------TYYIKDLILSYNQISKLNA--------------------NTFRN 183 (325)
Q Consensus 160 ------------------------------------~~~L~~L~l~~~~l~~~~~--------------------~~~~~ 183 (325)
...++.|++.++.+..++. .....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 0112222222222111100 00112
Q ss_pred ccccEEEcccCCCc--------------------------c------------------------cChhhhhCccccCCE
Q psy11652 184 LNVFRLYLKFNKIS--------------------------E------------------------IHDFAFNGLNSTLEF 213 (325)
Q Consensus 184 ~~L~~L~l~~~~l~--------------------------~------------------------~~~~~~~~~~~~L~~ 213 (325)
++++.+++++|.+. . .+...+..++ +++.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~-~l~~ 449 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIY 449 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT-TCCE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc-cccc
Confidence 34555555544331 0 1122344555 7777
Q ss_pred EEccCCCCcCc-hHhhhCCCCCCEEeCCCCccc-ccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCc
Q psy11652 214 LDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIE-FIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNF 289 (325)
Q Consensus 214 L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~ 289 (325)
++++.|.+... +..+..++.++.|++++|.+. .+.+..+..+++|+.|++++|+++.+++ +..+++|++|++++|+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 77777777633 446778899999999999744 4666788899999999999999998765 9999999999999999
Q ss_pred Ccccccccccchhhhcccccccccceeecc
Q psy11652 290 LNELILESSIVENEIIDQNMLFNSNAVMED 319 (325)
Q Consensus 290 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (325)
|+++++.......++..+++..|++..++.
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 999999887777788889999999976643
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.3e-25 Score=210.32 Aligned_cols=239 Identities=21% Similarity=0.192 Sum_probs=158.0
Q ss_pred ccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecC
Q psy11652 26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN 105 (325)
Q Consensus 26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~ 105 (325)
..++++|+++++.++.+|. .+ .++|++|++++|.++.+|. .+++|++|++++|.+..++..+++|+.|++++|
T Consensus 39 ~~~l~~L~ls~n~L~~lp~-~l----~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPD-CL----PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSN 111 (622)
T ss_dssp HHCCCEEECCSSCCSCCCS-CC----CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSC
T ss_pred CCCCcEEEecCCCcCccCh-hh----CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCC
Confidence 3479999999999999998 45 2799999999999998875 578999999999998877446899999999999
Q ss_pred cccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCcc
Q psy11652 106 YLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLN 185 (325)
Q Consensus 106 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 185 (325)
.+..+.. .+++|+.|++++|.++.+|. .+++|++|++++|.++.++.. +.+|+.|++.+|.++.++ ...++
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~ 182 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP---MLPSG 182 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC---CCCTT
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCC-CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc---ccCCC
Confidence 8887744 67889999999998888773 248888888888888776432 345666666666666555 12356
Q ss_pred ccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccC
Q psy11652 186 VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG 265 (325)
Q Consensus 186 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 265 (325)
|+.|++++|.++.++. ..+ +|+.|++++|.+..+|. .+++|+.|++++|.+++++ ..+++|+.|++++
T Consensus 183 L~~L~Ls~N~l~~l~~----~~~-~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 183 LQELSVSDNQLASLPT----LPS-ELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSG 250 (622)
T ss_dssp CCEEECCSSCCSCCCC----CCT-TCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCCC----ccc-hhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCC
Confidence 6666666666655432 112 45555555555444432 1244555555555444433 2234444555555
Q ss_pred CCCcccCCCCCCCCCCEEECCCCcCcccc
Q psy11652 266 NKLTRIPDFIHNKRLSHLNLGYNFLNELI 294 (325)
Q Consensus 266 n~l~~l~~~~~~~~L~~L~l~~n~i~~~~ 294 (325)
|.++.+|. .+++|+.|++++|.|+.+|
T Consensus 251 N~L~~lp~--~~~~L~~L~Ls~N~L~~lp 277 (622)
T 3g06_A 251 NRLTSLPM--LPSGLLSLSVYRNQLTRLP 277 (622)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCCSCC
T ss_pred CCCCcCCc--ccccCcEEeCCCCCCCcCC
Confidence 54444443 3344445555555444443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.5e-26 Score=197.53 Aligned_cols=240 Identities=19% Similarity=0.233 Sum_probs=191.4
Q ss_pred cEEEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceee---c--CCCCCCccEEEccCCc
Q psy11652 78 LWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEF---V--IPNRKHIEKLDLSNNL 149 (325)
Q Consensus 78 ~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~---~--~~~~~~L~~L~l~~~~ 149 (325)
+.++++++.++.+ ..++++|+.|++++|.+..+ ..+.++++|++|++++|.++.+ + ...+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3555666555555 34466677777777766666 3466777777777777776633 2 4457788888888888
Q ss_pred cccchhhccCCCCccEEEccCCcCccccc--CccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC--ch
Q psy11652 150 ISTINLNLNNTYYIKDLILSYNQISKLNA--NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN--IN 225 (325)
Q Consensus 150 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~ 225 (325)
++.++..+..+++|+.|++++|.++.++. .+...++|++|++++|.++...+..+..++ +|++|++++|.+.. +|
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEEC
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccch
Confidence 87776668888888888888888877664 344458999999999998888888888898 99999999999874 67
Q ss_pred HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccch-h
Q psy11652 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVE-N 302 (325)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~ 302 (325)
..+..+++|++|++++|.++++++..+..+++|+.|++++|.++.++. +..+++|+.|++++|++++.++...... .
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 788999999999999999999888889999999999999999998876 8889999999999999999888765443 4
Q ss_pred hhcccccccccceeec
Q psy11652 303 EIIDQNMLFNSNAVME 318 (325)
Q Consensus 303 ~~~~~~~~~~~~~~~~ 318 (325)
.+..+++..|.+.+.+
T Consensus 249 ~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 249 SLAFLNLTQNDFACTC 264 (306)
T ss_dssp TCCEEECTTCCEECSG
T ss_pred cCCEEEccCCCeeccc
Confidence 7788899999986543
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.2e-26 Score=210.68 Aligned_cols=266 Identities=20% Similarity=0.219 Sum_probs=153.9
Q ss_pred cccccceEEcCCCcee-eecCCCcCccccc-------------CccEEECCCCcccccccccCCCCccEEEccCCCCccc
Q psy11652 25 SCILLMSAENEDNQIA-ELETANWSPEIQN-------------KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL 90 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~-------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 90 (325)
.+++|++|+++++.+. .+|. .+ +++ . .+++|++++|.++++|.+ .++|++|++++|.+..+
T Consensus 32 ~L~~L~~L~l~~n~~~~~~p~-~~-~~l-~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~l 106 (454)
T 1jl5_A 32 NVKSKTEYYNAWSEWERNAPP-GN-GEQ-REMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTEL 106 (454)
T ss_dssp --CCHHHHHHHHHHHHHTSCT-TS-CCC-HHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSC
T ss_pred cccchhhhhccCCcccccCCc-cc-ccc-hhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCcc
Confidence 5555555555555554 3333 33 332 2 235566666655555532 24566666666655555
Q ss_pred ccccCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEcc
Q psy11652 91 DSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169 (325)
Q Consensus 91 ~~l~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 169 (325)
+..+++|+.|++++|.+..+..+ .++|++|++++|.++.+| +..+++|++|++++|.++.+|..+ .+|+.|+++
T Consensus 107 p~~~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 107 PELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp CCCCTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred ccccCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence 33345666666666655544211 146666666666666666 556666677777666666554322 366667776
Q ss_pred CCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccccc
Q psy11652 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQN 249 (325)
Q Consensus 170 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 249 (325)
+|.++.++ .+...++|+.|++++|.+++++. ..+ +|+.|++++|.+..+|. +..+++|++|++++|.+++++.
T Consensus 182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~----~~~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 182 NNQLEELP-ELQNLPFLTAIYADNNSLKKLPD----LPL-SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC----CCT-TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS
T ss_pred CCcCCcCc-cccCCCCCCEEECCCCcCCcCCC----CcC-cccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc
Confidence 66666654 34444677777777776665432 112 67777777777766663 6677777777777777766543
Q ss_pred chhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcccccccccchhhhcccccccccceee
Q psy11652 250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVM 317 (325)
Q Consensus 250 ~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (325)
..++|+.|++++|.++.+|.. .++|+.|++++|.+++++... ..+..+++..|.+..+
T Consensus 255 ----~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~~~----~~L~~L~l~~N~l~~i 312 (454)
T 1jl5_A 255 ----LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSL 312 (454)
T ss_dssp ----CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESCCC----TTCCEEECCSSCCSEE
T ss_pred ----cccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccCcC----CcCCEEECcCCcCCcc
Confidence 135677777777777766652 256777777777777654321 2334444455554443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.2e-25 Score=204.54 Aligned_cols=236 Identities=23% Similarity=0.366 Sum_probs=205.9
Q ss_pred cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEcc
Q psy11652 53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLS 125 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~ 125 (325)
.....++.++..+..+| .+. +++++|++++|.+..+ ..| +++|+.|++++|.+..+ ..+.++++|++|+++
T Consensus 54 ~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 54 NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35678899888899888 443 6899999999999888 566 89999999999998888 688899999999999
Q ss_pred CCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC-CcCcccccCccCC-ccccEEEcccCCCccc
Q psy11652 126 NNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY-NQISKLNANTFRN-LNVFRLYLKFNKISEI 199 (325)
Q Consensus 126 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~ 199 (325)
+|.++.++ +..+++|++|++++|.++.+ +..|.++++|+.|++.+ +.+..++...+.. ++|+.|++++|.++.+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999877 55789999999999999988 66899999999999998 4666777655554 9999999999999887
Q ss_pred ChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCC
Q psy11652 200 HDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIH 276 (325)
Q Consensus 200 ~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~ 276 (325)
+ .+..++ +|+.|++++|.+..+ +..+..+++|+.|++++|.++.+.+..+.++++|+.|++++|+++.+|. +..
T Consensus 212 ~--~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 P--NLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C--CCTTCT-TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c--cccccc-cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 5 477787 999999999999866 5588999999999999999999888889999999999999999998887 888
Q ss_pred CCCCCEEECCCCcCccc
Q psy11652 277 NKRLSHLNLGYNFLNEL 293 (325)
Q Consensus 277 ~~~L~~L~l~~n~i~~~ 293 (325)
+++|+.|++++|++..-
T Consensus 289 l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEccCCCcCCC
Confidence 99999999999998653
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=204.08 Aligned_cols=235 Identities=25% Similarity=0.373 Sum_probs=207.5
Q ss_pred cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEcc
Q psy11652 53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLS 125 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~ 125 (325)
...+.++..+..++.+| .+. ++++.|++++|.+..+ ..| +++|+.|++++|.+..+ ..+.++++|++|+++
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 46778999999999998 443 6899999999999888 566 89999999999998888 688999999999999
Q ss_pred CCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCC-cCcccccCccCC-ccccEEEcccCCCccc
Q psy11652 126 NNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN-QISKLNANTFRN-LNVFRLYLKFNKISEI 199 (325)
Q Consensus 126 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~-~~L~~L~l~~~~l~~~ 199 (325)
+|.++.++ +..+++|++|++++|.++.+ +..|.++++|+.|++.+| .+..++...+.. ++|+.|++++|.++.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99999877 56889999999999999988 668999999999999984 566677655554 9999999999999987
Q ss_pred ChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCC
Q psy11652 200 HDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIH 276 (325)
Q Consensus 200 ~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~ 276 (325)
+ .+..++ +|+.|++++|.+..+ +..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|+++.++. +..
T Consensus 201 ~--~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 P--NLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C--CCTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c--ccCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 5 477887 999999999999866 4588999999999999999999988889999999999999999998887 888
Q ss_pred CCCCCEEECCCCcCcc
Q psy11652 277 NKRLSHLNLGYNFLNE 292 (325)
Q Consensus 277 ~~~L~~L~l~~n~i~~ 292 (325)
+++|+.|++++|++..
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 9999999999999864
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.7e-26 Score=196.24 Aligned_cols=211 Identities=21% Similarity=0.318 Sum_probs=152.2
Q ss_pred cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEe
Q psy11652 29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSV 102 (325)
Q Consensus 29 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l 102 (325)
-++++++++.++.+|. .+ .++|++|+++++.++.++ .|.++++|++|++++|.+..+ ..| +++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~-~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPV-GI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp SCEEECCSSCCSSCCT-TC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CeEEEcCcCCcccCCc-CC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 4689999999999988 44 379999999999999887 688999999999999988877 445 788888888
Q ss_pred ecCc-ccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcc
Q psy11652 103 ANNY-LVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISK 175 (325)
Q Consensus 103 ~~~~-l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~ 175 (325)
++|. +..+ ..+..+++|++|++++|.++.++ +..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 8886 6655 56777777888887777777554 44567777777777777666 4456667777777777776666
Q ss_pred cccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccc
Q psy11652 176 LNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE 245 (325)
Q Consensus 176 ~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~ 245 (325)
++...+. .++|+.|++++|.+++..+..+..++ +|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 6554333 36666677766666666556666666 66666666666665543 4566666666666666654
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=202.43 Aligned_cols=241 Identities=18% Similarity=0.239 Sum_probs=208.8
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc-cc-c--cCCccEE
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-DS-L--PKTMETL 100 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~-l--~~~L~~L 100 (325)
++|++|+++++.++.++...| ..+ ++|++|++++|.++.++ .|.++++|++|++++|.+..+ .. | +++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDL-QRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTT-TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHh-ccC-CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 489999999999999998777 777 99999999999999886 799999999999999999988 33 5 8999999
Q ss_pred EeecCcccch-h--hhccCCCCCEEEccCC-cceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCc
Q psy11652 101 SVANNYLVNY-L--ELNRMTSLKWIVLSNN-YIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQ 172 (325)
Q Consensus 101 ~l~~~~l~~~-~--~~~~~~~L~~L~l~~~-~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 172 (325)
++++|.+..+ . .+.++++|++|++++| .+..++ +..+++|++|++++|.++.. +..+..+++|+.|++.+|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 9999999887 3 5889999999999998 477665 66789999999999999988 8899999999999999999
Q ss_pred CcccccCccC-CccccEEEcccCCCcccChhhhh---CccccCCEEEccCCCCc-----CchHhhhCCCCCCEEeCCCCc
Q psy11652 173 ISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFN---GLNSTLEFLDLENNRLT-----NINQCFRNLKKLKYLYLHNNN 243 (325)
Q Consensus 173 l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~ 243 (325)
++.++...+. .++|+.|++++|.+++.....+. ... .++.+++.++.+. .+|..+..+++|+.|++++|.
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~-~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS-LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC-CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccc-hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 9877766554 48999999999999876544333 233 7888888888776 467788999999999999999
Q ss_pred ccccccchhccCccCCEEEccCCCCcc
Q psy11652 244 IEFIQNNTFEHLVNLKSISLSGNKLTR 270 (325)
Q Consensus 244 l~~~~~~~l~~~~~L~~L~l~~n~l~~ 270 (325)
++.++...+..+++|+.|++++|.+..
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 999888778899999999999999883
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.2e-25 Score=188.83 Aligned_cols=215 Identities=23% Similarity=0.328 Sum_probs=141.1
Q ss_pred cEEEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCc-c
Q psy11652 78 LWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNL-I 150 (325)
Q Consensus 78 ~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~-~ 150 (325)
++++.+++.+..+ ..++++|++|++++|.+..+ ..+..+++|++|++++|.++.++ +..+++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 3444544444444 33355566666665555555 34556666666666666666543 4456666677776665 5
Q ss_pred ccc-hhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-h
Q psy11652 151 STI-NLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-C 227 (325)
Q Consensus 151 ~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~ 227 (325)
+.+ +..+..+++|+.|++.+|.++.+++..+. .++|++|++++|.++..++..+..++ +|+.|++++|.++.++. .
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccCHHH
Confidence 555 56666677777777777776665544433 37777777777777766666666676 77777777777776654 4
Q ss_pred hhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccc
Q psy11652 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293 (325)
Q Consensus 228 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~ 293 (325)
+..+++|++|++++|.++++.+..+..+++|+.|++++|.++.++. +..+++|+.|++++|++...
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 6677777777777777777666667777777777777777776665 67777777777777777643
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=5.2e-25 Score=206.22 Aligned_cols=242 Identities=24% Similarity=0.253 Sum_probs=211.8
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecCc
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~~ 106 (325)
++|++|++++|.++.+|. . +++|++|++++|.++.+|. .+++|++|++++|.+..++..+++|+.|++++|.
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~----l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--L----PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 132 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--C----CTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSC
T ss_pred CCCcEEEecCCCCCCCCC--c----CCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCC
Confidence 689999999999998887 2 3899999999999998876 7899999999999998885578999999999999
Q ss_pred ccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccc
Q psy11652 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNV 186 (325)
Q Consensus 107 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 186 (325)
++.++. .+++|++|++++|.++.+|. .+.+|+.|++++|.++.++ ..+++|+.|++++|.++.++.. .++|
T Consensus 133 l~~lp~--~l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L 203 (622)
T 3g06_A 133 LTSLPV--LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSEL 203 (622)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTC
T ss_pred CCcCCC--CCCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchh
Confidence 888733 24899999999999998773 4578999999999999987 4578999999999999887753 3789
Q ss_pred cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCC
Q psy11652 187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266 (325)
Q Consensus 187 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 266 (325)
+.|++++|.++.++. .++ +|+.|++++|.++.+| ..+++|+.|++++|.++.++. .+++|+.|++++|
T Consensus 204 ~~L~L~~N~l~~l~~----~~~-~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 204 YKLWAYNNRLTSLPA----LPS-GLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN 271 (622)
T ss_dssp CEEECCSSCCSSCCC----CCT-TCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred hEEECcCCcccccCC----CCC-CCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC
Confidence 999999999987753 235 9999999999999887 566899999999999998776 4689999999999
Q ss_pred CCcccCC-CCCCCCCCEEECCCCcCccccccc
Q psy11652 267 KLTRIPD-FIHNKRLSHLNLGYNFLNELILES 297 (325)
Q Consensus 267 ~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~ 297 (325)
.++.+|. +..+++|+.|++++|++++..+..
T Consensus 272 ~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCcCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 9999998 999999999999999999877664
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-27 Score=205.72 Aligned_cols=232 Identities=25% Similarity=0.318 Sum_probs=111.8
Q ss_pred cceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCcccccc--cCCccEEEeec
Q psy11652 29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVAN 104 (325)
Q Consensus 29 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~ 104 (325)
++..+++.+.+...+...+ .. +++|++|++++|.++.++ .+.++++|++|++++|.+.....+ +++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLR-QS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHH-TT-GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHh-cc-CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence 3444445555544443222 22 256666666666666554 555666666666666655444223 45555555555
Q ss_pred CcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC
Q psy11652 105 NYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN 183 (325)
Q Consensus 105 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 183 (325)
|.+..+. ..++|++|++++|.++.++...+++|++|++++|.++.+ +..+..+++|+.
T Consensus 90 n~l~~l~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~------------------ 148 (317)
T 3o53_A 90 NYVQELL---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY------------------ 148 (317)
T ss_dssp SEEEEEE---ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE------------------
T ss_pred Ccccccc---CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCE------------------
Confidence 5443331 124455555555544444422344444444444444444 333444444444
Q ss_pred ccccEEEcccCCCcccChhhhh-CccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEE
Q psy11652 184 LNVFRLYLKFNKISEIHDFAFN-GLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSIS 262 (325)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 262 (325)
|++++|.++...+..+. .++ +|+.|++++|.+..++. ...+++|++|++++|.++++++. +..+++|+.|+
T Consensus 149 -----L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~ 220 (317)
T 3o53_A 149 -----LDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWIS 220 (317)
T ss_dssp -----EECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEE
T ss_pred -----EECCCCCCCcccHHHHhhccC-cCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEE
Confidence 44444444443333332 233 55555555555444432 12345555555555555554442 44455555555
Q ss_pred ccCCCCcccCC-CCCCCCCCEEECCCCcCc
Q psy11652 263 LSGNKLTRIPD-FIHNKRLSHLNLGYNFLN 291 (325)
Q Consensus 263 l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~ 291 (325)
+++|.++.+|. +..+++|+.|++++|+++
T Consensus 221 L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 55555555554 555555555555555555
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5e-26 Score=197.51 Aligned_cols=212 Identities=23% Similarity=0.268 Sum_probs=166.4
Q ss_pred cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccC
Q psy11652 94 PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (325)
+++|++|++++|.+... ..+..+++|++|++++|.++.++ +..+++|++|++++|.++.++ ..++|+.|++++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~ 108 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAAN 108 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCS
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCcCEEECCC
Confidence 45666666666666655 45667777777777777776544 666777777777777777653 226788888888
Q ss_pred CcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-Hhh-hCCCCCCEEeCCCCcccccc
Q psy11652 171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCF-RNLKKLKYLYLHNNNIEFIQ 248 (325)
Q Consensus 171 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~-~~~~~L~~L~l~~~~l~~~~ 248 (325)
|.++.++... .++|+.|++++|.++...+..+..++ +|+.|++++|.+..++ ..+ ..+++|++|++++|.+++++
T Consensus 109 n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 109 NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CccCCcCccc--cCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 8887666543 46799999999999988877888888 9999999999998654 344 47899999999999999875
Q ss_pred cchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhcccccccccce
Q psy11652 249 NNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNA 315 (325)
Q Consensus 249 ~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (325)
. ...+++|+.|++++|.++.+|+ +..+++|+.|++++|.++.+|... .....+..+++..|++.
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 186 G--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp C--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC-CCCTTCCEEECTTCCCB
T ss_pred c--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh-hcCCCCCEEEccCCCcc
Confidence 4 3348999999999999999988 889999999999999999988753 34456778888888886
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.8e-25 Score=194.72 Aligned_cols=229 Identities=15% Similarity=0.095 Sum_probs=142.3
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCccEEEe
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTMETLSV 102 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l 102 (325)
+++++|+++++.++.+|. .+ .++ ++|++|++++|.+..+| .+.++++|++|++++|.+..+ ..+ +++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~-~l-~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPD-QA-FRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCS-CG-GGG-TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcCh-hh-hhC-CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 466667777666666666 44 444 66677777666666666 566666666666666666544 334 556666666
Q ss_pred ecCcccch--hhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652 103 ANNYLVNY--LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT 180 (325)
Q Consensus 103 ~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 180 (325)
++|..... ..+.. ..+.+ . +..+++|++|++++|.++.+|..+.++++|+.|++++|.+..++..+
T Consensus 158 ~~n~~~~~~p~~~~~------~~~~~----~--~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TDASG----E--HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp EEETTCCCCCSCSEE------EC-CC----C--EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred CCCCCccccChhHhh------ccchh----h--hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 55433222 11111 00000 0 11356666666666666655666677777777777777777666655
Q ss_pred cCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCC
Q psy11652 181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259 (325)
Q Consensus 181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 259 (325)
...++|+.|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|++|++++|.+.+..|..++.+++++
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 5557777777777766666566667776 7777777776543 6666677777777777777776665566777777777
Q ss_pred EEEccCCCCccc
Q psy11652 260 SISLSGNKLTRI 271 (325)
Q Consensus 260 ~L~l~~n~l~~l 271 (325)
.+++..+.+..+
T Consensus 305 ~l~l~~~~~~~l 316 (328)
T 4fcg_A 305 IILVPPHLQAQL 316 (328)
T ss_dssp EEECCGGGSCC-
T ss_pred EEeCCHHHHHHH
Confidence 777766655543
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5.5e-25 Score=191.71 Aligned_cols=231 Identities=19% Similarity=0.172 Sum_probs=184.8
Q ss_pred cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCccEEEeecCcccch-hhhccCCCCCEEEccCC
Q psy11652 53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNN 127 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~ 127 (325)
++++.|+++++.+..+| .+.++++|++|++++|.+..+ ..+ +++|+.|++++|.+..+ ..+.++++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 68888899888888888 677788888888888888766 455 78888888888877766 67777888888888776
Q ss_pred cce-eecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhC
Q psy11652 128 YIK-EFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNG 206 (325)
Q Consensus 128 ~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 206 (325)
.+. .+|. .+.... ....+.++++|+.|++++|.++.++..+..+++|+.|++++|.++++++ .+..
T Consensus 161 ~~~~~~p~----~~~~~~--------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~ 227 (328)
T 4fcg_A 161 PELTELPE----PLASTD--------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHH 227 (328)
T ss_dssp TTCCCCCS----CSEEEC---------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGG
T ss_pred CCccccCh----hHhhcc--------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhcc
Confidence 543 4441 111111 1234667999999999999999888877777999999999999998765 5888
Q ss_pred ccccCCEEEccCCCCc-CchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc-ccCC-CCCCCCCCEE
Q psy11652 207 LNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPD-FIHNKRLSHL 283 (325)
Q Consensus 207 ~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L 283 (325)
++ +|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|. +..+++|+.+
T Consensus 228 l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 228 LP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp CT-TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CC-CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 88 9999999998765 77778999999999999999888777778899999999999998876 7888 9999999999
Q ss_pred ECCCCcCccccccc
Q psy11652 284 NLGYNFLNELILES 297 (325)
Q Consensus 284 ~l~~n~i~~~~~~~ 297 (325)
++..+.+..+....
T Consensus 307 ~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 307 LVPPHLQAQLDQHR 320 (328)
T ss_dssp ECCGGGSCC-----
T ss_pred eCCHHHHHHHhhhh
Confidence 99988877766543
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.3e-25 Score=200.47 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=15.2
Q ss_pred CccEEECCCCcccccc--cccCCCCccEEEccCCCCc
Q psy11652 54 KLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQ 88 (325)
Q Consensus 54 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 88 (325)
+|++|+|++|.+..++ .|.++++|++|++++|.+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 71 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC
Confidence 4444444444444433 3444444444444444433
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.2e-25 Score=194.60 Aligned_cols=195 Identities=17% Similarity=0.091 Sum_probs=110.2
Q ss_pred cCCccEEEeecCcccch--hhh--ccCCCCCEEEccCCcceeec--CC-----CCCCccEEEccCCccccc-hhhccCCC
Q psy11652 94 PKTMETLSVANNYLVNY--LEL--NRMTSLKWIVLSNNYIKEFV--IP-----NRKHIEKLDLSNNLISTI-NLNLNNTY 161 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~--~~~--~~~~~L~~L~l~~~~~~~~~--~~-----~~~~L~~L~l~~~~~~~~-~~~~~~~~ 161 (325)
+++|++|++++|.+... ..+ ..+++|++|++++|.++.+| +. .+++|++|++++|.++.+ +..|++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 44555555555555432 222 45555555555555555433 11 125666666666666555 45566666
Q ss_pred CccEEEccCCcCcc---cccCc--cCCccccEEEcccCCCccc---ChhhhhCccccCCEEEccCCCCcCch--HhhhCC
Q psy11652 162 YIKDLILSYNQISK---LNANT--FRNLNVFRLYLKFNKISEI---HDFAFNGLNSTLEFLDLENNRLTNIN--QCFRNL 231 (325)
Q Consensus 162 ~L~~L~l~~~~l~~---~~~~~--~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~ 231 (325)
+|+.|++++|.+.. ++... ...++|++|++++|.++.. ....+..++ +|+.|++++|.+...+ ..+..+
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECCCCcCCcccchhhhhhc
Confidence 66666666665432 11112 2336666666666666532 223334555 6777777777666433 234455
Q ss_pred CCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcc
Q psy11652 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 232 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~ 292 (325)
++|++|++++|.++.++... . ++|+.|++++|+++.+|.+..+++|+.|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGL-P--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSC-C--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccChhhhhc-c--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 66777777777766554422 2 5677777777777766556666777777777777664
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1.6e-25 Score=204.20 Aligned_cols=265 Identities=16% Similarity=0.138 Sum_probs=160.2
Q ss_pred cccccceEEcCCCceeeecCCCcCccccc----CccEEECCCCcccc-----cc-cccCCCCccEEEccCCCCccc--cc
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQN----KLTTLFIGENHIHQ-----IE-NLNGFRSILWLNMDSNLLQTL--DS 92 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~----~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~--~~ 92 (325)
.+++|++|+++++.+++.....+ ....+ +|++|++++|.++. ++ .+..+++|++|++++|.+.+. ..
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCV-LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHH-HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHH-HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 56788888888887775433233 22223 68888888887774 23 677788888888888877654 22
Q ss_pred c-------cCCccEEEeecCcccch------hhhccCCCCCEEEccCCcceeec---C-----CCCCCccEEEccCCccc
Q psy11652 93 L-------PKTMETLSVANNYLVNY------LELNRMTSLKWIVLSNNYIKEFV---I-----PNRKHIEKLDLSNNLIS 151 (325)
Q Consensus 93 l-------~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~~~~~~~~---~-----~~~~~L~~L~l~~~~~~ 151 (325)
+ .++|++|++++|.++.. ..+..+++|++|++++|.++... . ...++|++|++++|.++
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 2 34688888888876653 45566788888888888766322 1 13557778888777776
Q ss_pred c-----chhhccCCCCccEEEccCCcCccc-----ccCcc-CCccccEEEcccCCCcccC----hhhhhCccccCCEEEc
Q psy11652 152 T-----INLNLNNTYYIKDLILSYNQISKL-----NANTF-RNLNVFRLYLKFNKISEIH----DFAFNGLNSTLEFLDL 216 (325)
Q Consensus 152 ~-----~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~-~~~~L~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l 216 (325)
. ++..+..+++|+.|++++|.++.. ...+. ..++|++|++++|.++... +..+..++ +|+.|++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L 291 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSL 291 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEEC
Confidence 5 245566677777777777766532 12222 2467777777777776532 33444455 6777777
Q ss_pred cCCCCcCc-----hHhhh-CCCCCCEEeCCCCcccccc----cchhccCccCCEEEccCCCCcccC-C-C----C-CCCC
Q psy11652 217 ENNRLTNI-----NQCFR-NLKKLKYLYLHNNNIEFIQ----NNTFEHLVNLKSISLSGNKLTRIP-D-F----I-HNKR 279 (325)
Q Consensus 217 ~~~~l~~~-----~~~~~-~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~l~-~-~----~-~~~~ 279 (325)
++|.++.. ...+. ..++|++|++++|.++... +..+..+++|+.|++++|.+++.. . + . ..++
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 77766521 11111 2246666666666655432 223444566666666666665321 1 1 1 1456
Q ss_pred CCEEECCCCcCc
Q psy11652 280 LSHLNLGYNFLN 291 (325)
Q Consensus 280 L~~L~l~~n~i~ 291 (325)
|+.|++++|.++
T Consensus 372 L~~L~L~~n~i~ 383 (461)
T 1z7x_W 372 LRVLWLADCDVS 383 (461)
T ss_dssp CCEEECTTSCCC
T ss_pred eEEEECCCCCCC
Confidence 666666666665
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=4.9e-23 Score=175.14 Aligned_cols=214 Identities=23% Similarity=0.284 Sum_probs=157.2
Q ss_pred EEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc
Q psy11652 80 LNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI 153 (325)
Q Consensus 80 L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~ 153 (325)
++..+..+..+ ..++++|++|++++|.+..+ ..+.++++|++|++++|.++.++ +..+++|++|++++|.++.+
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 34444444444 33466677777777776666 36677777888888777777665 45677888888888887777
Q ss_pred -hhhccCCCCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccC-hhhhhCccccCCEEEccCCCCcCchH-hhh
Q psy11652 154 -NLNLNNTYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIH-DFAFNGLNSTLEFLDLENNRLTNINQ-CFR 229 (325)
Q Consensus 154 -~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~ 229 (325)
+..|.++++|+.|++.+|.+..++...+ ..++|++|++++|.++... +..+..++ +|+.|++++|.+..++. .+.
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECGGGGH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCCHHHhh
Confidence 5677888888888888888777665333 3488888888888887753 56777887 88888888888876543 444
Q ss_pred CCCCCC----EEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 230 NLKKLK----YLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 230 ~~~~L~----~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
.+++++ .|++++|.++++++..+.. .+|+.|++++|.++.+|. +..+++|+.|++++|+++.--+
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 444444 8899999988877755553 489999999999998887 7888999999999999886544
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.2e-23 Score=190.98 Aligned_cols=213 Identities=28% Similarity=0.369 Sum_probs=186.7
Q ss_pred cCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccC
Q psy11652 72 NGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSN 147 (325)
Q Consensus 72 ~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~ 147 (325)
..+++|++|++++|.+..+ ..| +++|+.|++++|.+.....+..+++|++|++++|.++.++. .++|++|++++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--~~~L~~L~L~~ 108 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV--GPSIETLHAAN 108 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE--CTTCCEEECCS
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC--CCCcCEEECcC
Confidence 3456999999999999888 456 89999999999999887559999999999999999998883 38999999999
Q ss_pred CccccchhhccCCCCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccChhhhh-CccccCCEEEccCCCCcCch
Q psy11652 148 NLISTINLNLNNTYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFN-GLNSTLEFLDLENNRLTNIN 225 (325)
Q Consensus 148 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~ 225 (325)
|.++.++. ..+++|+.|++++|.++.+++..+ .+++|+.|++++|.+++..+..+. .++ +|+.|++++|.+..++
T Consensus 109 N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEE
T ss_pred CcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCcccccc
Confidence 99998832 246889999999999998765444 459999999999999988777776 677 9999999999999776
Q ss_pred HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCc
Q psy11652 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLN 291 (325)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~ 291 (325)
. ...+++|+.|++++|.++++++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|++.
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 5 34689999999999999998775 8889999999999999999998 889999999999999998
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=7.3e-25 Score=199.80 Aligned_cols=266 Identities=15% Similarity=0.149 Sum_probs=207.6
Q ss_pred ccceEEcCCCceeee-----cCCCcCcccccCccEEECCCCcccccc------c-ccCCCCccEEEccCCCCccc-----
Q psy11652 28 LLMSAENEDNQIAEL-----ETANWSPEIQNKLTTLFIGENHIHQIE------N-LNGFRSILWLNMDSNLLQTL----- 90 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~------~-~~~~~~L~~L~l~~~~~~~~----- 90 (325)
+|++|++++|.+++. +. .+ ..+ ++|++|++++|.+++.. . ....++|++|++++|.+...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l-~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TL-RTL-PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HT-TSC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HH-ccC-CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 699999999999843 33 45 555 89999999999987543 1 33467899999999988875
Q ss_pred -ccc--cCCccEEEeecCcccch--hhhc-----cCCCCCEEEccCCccee-----ec--CCCCCCccEEEccCCccccc
Q psy11652 91 -DSL--PKTMETLSVANNYLVNY--LELN-----RMTSLKWIVLSNNYIKE-----FV--IPNRKHIEKLDLSNNLISTI 153 (325)
Q Consensus 91 -~~l--~~~L~~L~l~~~~l~~~--~~~~-----~~~~L~~L~l~~~~~~~-----~~--~~~~~~L~~L~l~~~~~~~~ 153 (325)
..+ +++|++|++++|.+... ..+. ..++|++|++++|.++. ++ ...+++|++|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 223 69999999999987765 2222 36799999999998885 34 44689999999999988754
Q ss_pred ------hhhccCCCCccEEEccCCcCcc-----cccCccCCccccEEEcccCCCcccChhhhhCc----cccCCEEEccC
Q psy11652 154 ------NLNLNNTYYIKDLILSYNQISK-----LNANTFRNLNVFRLYLKFNKISEIHDFAFNGL----NSTLEFLDLEN 218 (325)
Q Consensus 154 ------~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~----~~~L~~L~l~~ 218 (325)
+..+..+++|+.|++++|.++. ++..+...++|+.|++++|.+++..+..+... .++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2334468999999999998885 45544456899999999999976555444433 13999999999
Q ss_pred CCCcC-----chHhhhCCCCCCEEeCCCCcccccccchhcc-----CccCCEEEccCCCCc-----ccCC-CCCCCCCCE
Q psy11652 219 NRLTN-----INQCFRNLKKLKYLYLHNNNIEFIQNNTFEH-----LVNLKSISLSGNKLT-----RIPD-FIHNKRLSH 282 (325)
Q Consensus 219 ~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~n~l~-----~l~~-~~~~~~L~~ 282 (325)
|.++. ++..+..+++|++|++++|.++......+.. .++|+.|++++|.++ .++. +..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 99873 4557788899999999999988754444432 579999999999998 5666 778899999
Q ss_pred EECCCCcCcccccc
Q psy11652 283 LNLGYNFLNELILE 296 (325)
Q Consensus 283 L~l~~n~i~~~~~~ 296 (325)
|++++|+++.....
T Consensus 403 L~l~~N~i~~~~~~ 416 (461)
T 1z7x_W 403 LDLSNNCLGDAGIL 416 (461)
T ss_dssp EECCSSSCCHHHHH
T ss_pred EECCCCCCCHHHHH
Confidence 99999999876544
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.7e-23 Score=174.19 Aligned_cols=209 Identities=21% Similarity=0.292 Sum_probs=165.2
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCC-Cccc--ccc--cCCc
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNL-LQTL--DSL--PKTM 97 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~--~~l--~~~L 97 (325)
.|..++.+++....++.+|. + .++|++|++++|.++.++ .|.++++|++|++++|. +..+ ..| +++|
T Consensus 9 ~C~~~~~~~v~c~~l~~ip~--~----~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L 82 (239)
T 2xwt_C 9 ECHQEEDFRVTCKDIQRIPS--L----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82 (239)
T ss_dssp SEEECSTTEEEECSCSSCCC--C----CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC
T ss_pred eeCCCCcceeEccCccccCC--C----CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC
Confidence 45443333333233666776 4 368999999999999988 78899999999999997 8777 356 8999
Q ss_pred cEEEeec-Ccccch--hhhccCCCCCEEEccCCcceeec-CCCCCCcc---EEEccCC-ccccc-hhhccCCCCcc-EEE
Q psy11652 98 ETLSVAN-NYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIE---KLDLSNN-LISTI-NLNLNNTYYIK-DLI 167 (325)
Q Consensus 98 ~~L~l~~-~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~---~L~l~~~-~~~~~-~~~~~~~~~L~-~L~ 167 (325)
++|++++ |.+..+ ..+.++++|++|++++|.++.+| +..+.+|+ +|++++| .++.+ +..|.++++|+ .|+
T Consensus 83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 9999998 888877 57888999999999999998888 66777777 8999998 88887 56688888999 999
Q ss_pred ccCCcCcccccCccCCccccEEEcccCC-CcccChhhhhCc-cccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCC
Q psy11652 168 LSYNQISKLNANTFRNLNVFRLYLKFNK-ISEIHDFAFNGL-NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNN 242 (325)
Q Consensus 168 l~~~~l~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 242 (325)
+++|.++.++...+..++|+.|++++|. ++.+++..|..+ + +|+.|++++|.+..+|.. .+++|+.|.+.++
T Consensus 163 l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~-~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB-CCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc-CCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 9988888888777766888888888884 888777777777 7 888888888887777653 5667777777654
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.2e-22 Score=172.10 Aligned_cols=202 Identities=21% Similarity=0.291 Sum_probs=131.9
Q ss_pred ccccccccccchhhhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCC
Q psy11652 9 YVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNL 86 (325)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~ 86 (325)
.+|.|....|. ...+.++++++++.++.+|. .+ ++++++|++++|.+..++ .|.++++|++|++++|.
T Consensus 3 ~~C~~~~~~C~-----c~~~~~~l~~~~~~l~~ip~-~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 3 ALCKKDGGVCS-----CNNNKNSVDCSSKKLTAIPS-NI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCBGGGTCSBE-----EETTTTEEECTTSCCSSCCS-CC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred ccCCCCCCCCE-----eCCCCCEEEccCCCCCccCC-CC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 34555555543 12358899999999999998 44 378999999999999887 78899999999999998
Q ss_pred Cccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhh
Q psy11652 87 LQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLN 156 (325)
Q Consensus 87 ~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~ 156 (325)
+..+ ..| +++|++|++++|.+..+ ..+..+++|++|++++|.++.++ +..+++|++|++++|.++.+ +..
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 8877 334 67777777777776666 34566667777777666666554 34555666666666665555 334
Q ss_pred ccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCC
Q psy11652 157 LNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221 (325)
Q Consensus 157 ~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l 221 (325)
|..+++|+.|++.+|.++.++...+. .++|+.|++++|.++.+++..+..++ +|+.|++++|.+
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~ 217 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCB
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCe
Confidence 55555666666665555555444332 25555555555555555444444444 555555555543
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.5e-24 Score=187.76 Aligned_cols=240 Identities=18% Similarity=0.110 Sum_probs=187.3
Q ss_pred ccCCCCccEEEccCCCCccc-ccccCCccEEEeecCcccch---hhh-------ccCCCCCEEEccCCcce-eec--C--
Q psy11652 71 LNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY---LEL-------NRMTSLKWIVLSNNYIK-EFV--I-- 134 (325)
Q Consensus 71 ~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~---~~~-------~~~~~L~~L~l~~~~~~-~~~--~-- 134 (325)
++..++|+++++++|.+ .+ ..+...|+.|++++|.+... ..+ .++++|++|++++|.++ .+| .
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44455667777777776 44 33444477777777766443 222 26899999999999998 566 3
Q ss_pred CCCCCccEEEccCCccccchhhccCC-----CCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccC--hhhh--
Q psy11652 135 PNRKHIEKLDLSNNLISTINLNLNNT-----YYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIH--DFAF-- 204 (325)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~--~~~~-- 204 (325)
..+++|++|++++|.++..|..+..+ ++|+.|++++|.+..+++..+ ..++|+.|++++|.+.+.. +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 67899999999999998876666665 899999999999998885444 4599999999999976531 2233
Q ss_pred hCccccCCEEEccCCCCcCchH----hhhCCCCCCEEeCCCCccccccc-chhccCccCCEEEccCCCCcccCC-CCCCC
Q psy11652 205 NGLNSTLEFLDLENNRLTNINQ----CFRNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPD-FIHNK 278 (325)
Q Consensus 205 ~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-~~~~~ 278 (325)
..++ +|++|++++|.+..++. .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++.+|. +. +
T Consensus 198 ~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A 274 (312)
T ss_dssp TSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred ccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence 6787 99999999999985543 45688999999999999998653 455667999999999999999998 54 8
Q ss_pred CCCEEECCCCcCcccccccccchhhhccccccccccee
Q psy11652 279 RLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAV 316 (325)
Q Consensus 279 ~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (325)
+|+.|++++|+++++|. .....++..+++..|++..
T Consensus 275 ~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCC
Confidence 99999999999999965 4444667788888998865
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-22 Score=171.22 Aligned_cols=199 Identities=23% Similarity=0.344 Sum_probs=173.4
Q ss_pred CCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC
Q psy11652 95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY 170 (325)
Q Consensus 95 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 170 (325)
...+.++++++.++.++. .-.+++++|++++|.++.++ +..+++|++|++++|.++.+ +..|.++++|+.|++++
T Consensus 16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 467889999988887732 11268999999999999777 56789999999999999988 56678999999999999
Q ss_pred CcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccc
Q psy11652 171 NQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQ 248 (325)
Q Consensus 171 ~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~ 248 (325)
|.+..++...+.. ++|++|++++|.++..++..|..++ +|+.|++++|.+..++. .+..+++|+.|++++|.++.++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 9999888766554 9999999999999999888888998 99999999999997776 5788999999999999999988
Q ss_pred cchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 249 NNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 249 ~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
+..+..+++|+.|++++|.++.+|. +..+++|+.|++++|++..--.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 8888899999999999999998887 8889999999999999876543
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=6.9e-23 Score=176.91 Aligned_cols=212 Identities=20% Similarity=0.301 Sum_probs=163.0
Q ss_pred CccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCccee
Q psy11652 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKE 131 (325)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 131 (325)
.+..+.+..+.+.+......+++|++|+++++.+..++.+ +++|+.|++++|.+..+..+..+++|++|++++|.++.
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC
T ss_pred HHHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC
Confidence 3444455556665544566688889999999888877666 88899999988888877558888888999888888887
Q ss_pred ec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCcccc
Q psy11652 132 FV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNST 210 (325)
Q Consensus 132 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 210 (325)
++ +..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +...++|+.|++++|.+++.++ +..++ +
T Consensus 100 ~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-~ 174 (308)
T 1h6u_A 100 VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLS-K 174 (308)
T ss_dssp CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT-T
T ss_pred chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCC-C
Confidence 77 7778888888888888877743 7788888888888888877665 4455788888888888877654 66777 8
Q ss_pred CCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC
Q psy11652 211 LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273 (325)
Q Consensus 211 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~ 273 (325)
|+.|++++|.+..++. +..+++|++|++++|.++++++ +..+++|+.|++++|.++..|.
T Consensus 175 L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 175 LTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 8888888888877665 6777888888888888877664 6777888888888888776554
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2e-22 Score=172.40 Aligned_cols=189 Identities=21% Similarity=0.260 Sum_probs=99.4
Q ss_pred cCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCC
Q psy11652 53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNN 127 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 127 (325)
+++++++++++.++.+| .+. ++++.|++++|.+..+ ..| +++|+.|++++|.++.+.....+++|++|++++|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCC
Confidence 45556666655555555 222 4555555555555544 233 5555555555555555433345555555555555
Q ss_pred cceeec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhh
Q psy11652 128 YIKEFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFA 203 (325)
Q Consensus 128 ~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~ 203 (325)
.++.+| +..+++|++|++++|.++.+ +..|.++++|+.|++++|.++.+++..+.. ++|+.|++++|.++.+++..
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH
Confidence 555544 33455555555555555555 344555555555555555555554444332 55555555555555555444
Q ss_pred hhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcc
Q psy11652 204 FNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNI 244 (325)
Q Consensus 204 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l 244 (325)
|..++ +|+.|++++|.+..+|..+....+|+.+++.+|.+
T Consensus 168 ~~~l~-~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 168 LNGLE-NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTCT-TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred hcCcC-CCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 45554 55555555555555555444445555555555544
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.9e-22 Score=171.48 Aligned_cols=213 Identities=20% Similarity=0.230 Sum_probs=140.6
Q ss_pred ceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCccEEEee
Q psy11652 30 MSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVA 103 (325)
Q Consensus 30 ~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~ 103 (325)
...++.+..++.+|. .+ .++|++|++++|.++.++ .|.++++|++|++++|.+..+ ..| +++|+.|+++
T Consensus 10 ~~~~c~~~~l~~ip~-~l----~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 10 ITYQCMELNFYKIPD-NL----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TEEECTTSCCSSCCS-SS----CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEEecCCCccccCC-CC----CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence 356777777888887 44 367999999999888877 678888888888888877665 234 5556666665
Q ss_pred cCcccch--hhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcc--ccc
Q psy11652 104 NNYLVNY--LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISK--LNA 178 (325)
Q Consensus 104 ~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~--~~~ 178 (325)
+|.+... ..+.++++|++|++++| .+..+ +..+..+++|+.|++++|.++. ++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVET---------------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTS---------------------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CCccCccChhhhcCCccccEEECCCC---------------------CccccCchhcccCCCCCEEECcCCccceecCch
Confidence 5555444 33444555555555444 44444 2345555566666666665554 233
Q ss_pred CccCCccccEEEcccCCCcccChhhhhCccccCC----EEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc
Q psy11652 179 NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLE----FLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH 254 (325)
Q Consensus 179 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 254 (325)
.+...++|+.|++++|.+++.++..+..++ .++ .+++++|.+..++.......+|+.|++++|.++++++..+..
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhh-hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc
Confidence 333446666666666666666555565555 555 777778777766654445557888888888888777767777
Q ss_pred CccCCEEEccCCCCc
Q psy11652 255 LVNLKSISLSGNKLT 269 (325)
Q Consensus 255 ~~~L~~L~l~~n~l~ 269 (325)
+++|+.|++++|.+.
T Consensus 223 l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 223 LTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCSCCEEECCSSCBC
T ss_pred cccccEEEccCCccc
Confidence 888888888888777
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.6e-23 Score=177.79 Aligned_cols=196 Identities=21% Similarity=0.320 Sum_probs=103.7
Q ss_pred cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCC
Q psy11652 94 PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN 171 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 171 (325)
+++|+.|+++++.+.....+..+++|++|++++|.++.++ +..+++|++|++++|.++.+ +..+.++++|+.|++.+|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 3444444444444443334444455555555555444444 44445555555555555544 334455555555555555
Q ss_pred cCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccccccc
Q psy11652 172 QISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQN 249 (325)
Q Consensus 172 ~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~ 249 (325)
.++.+++..+. +++|++|++++|.+++.++..+..++ +|+.|++++|.++.++. .+..+++|++|++++|.++++++
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 55555444332 25555555555555555554555555 66666666665554443 34555666666666666666555
Q ss_pred chhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCccccc
Q psy11652 250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 250 ~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
..+..+++|+.|++++|.+.. .+++|+.+++++|.+++..+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHHHTGGGBB
T ss_pred HHHhCCcCCCEEEccCCCccc-----cCcHHHHHHHHHHhCCCccc
Confidence 555556666666666665542 34455556666555554333
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=7.7e-23 Score=176.59 Aligned_cols=215 Identities=20% Similarity=0.251 Sum_probs=176.1
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV 102 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l 102 (325)
.+.++..+.+....++++.. + ..+ ++|++|+++++.+..++.+..+++|++|++++|.+..+..+ +++|+.|++
T Consensus 17 ~l~~~~~~~l~~~~~~~~~~--~-~~l-~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L 92 (308)
T 1h6u_A 17 ALANAIKIAAGKSNVTDTVT--Q-ADL-DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL 92 (308)
T ss_dssp HHHHHHHHHTTCSSTTSEEC--H-HHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC
T ss_pred HHHHHHHHHhCCCCcCceec--H-HHc-CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEc
Confidence 44455555666666665433 2 344 88899999888888888788888899999998888877446 888999999
Q ss_pred ecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCcc
Q psy11652 103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTF 181 (325)
Q Consensus 103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 181 (325)
++|.+..+..+..+++|++|++++|.++.++ +..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +.
T Consensus 93 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 170 (308)
T 1h6u_A 93 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LA 170 (308)
T ss_dssp CSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred cCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hc
Confidence 9988888877888999999999999988877 7788999999999999888744 7888999999999999888776 55
Q ss_pred CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccccc
Q psy11652 182 RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQN 249 (325)
Q Consensus 182 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 249 (325)
.+++|+.|++++|.+++.++ +..++ +|+.|++++|.+..++. +..+++|+.|++++|.++..+.
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLP-NLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCCEEECCCCccCcChh--hcCCC-CCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 56999999999999988764 77887 99999999999987774 7889999999999999877554
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3e-22 Score=171.38 Aligned_cols=197 Identities=26% Similarity=0.290 Sum_probs=122.3
Q ss_pred cccCCCCccEEEccCCCCccc-ccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEc
Q psy11652 70 NLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDL 145 (325)
Q Consensus 70 ~~~~~~~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l 145 (325)
.+.+++++++++++++.++.+ ..++++++.|++++|.+..+ ..+..+++|++|++++|.++.++ ...+++|++|++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred cccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 456788899999999988888 55688899999988888777 57788888888888888888766 556677777777
Q ss_pred cCCccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc
Q psy11652 146 SNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224 (325)
Q Consensus 146 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 224 (325)
++|.++.+|..+..+++|+.|++++|.++.+++..+.. ++|+.|++++|.++.+++..|..++ +|+.|++++|.+..+
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc-CCCEEECCCCcCCcc
Confidence 77776666555666666666666666666555443332 5555555555555555444444444 555555555544444
Q ss_pred hH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCC
Q psy11652 225 NQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268 (325)
Q Consensus 225 ~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 268 (325)
|. .+..+++|+.|++++|.++.++.. +...++|+.+++++|.+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCc
Confidence 43 233444444444444444444332 22233444444444443
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.1e-22 Score=169.29 Aligned_cols=200 Identities=20% Similarity=0.250 Sum_probs=156.2
Q ss_pred CcccccccCCccEEEeecCcccch--hhhccCCCCCEEEccCCc-ceeec---CCCCCCccEEEccC-Cccccc-hhhcc
Q psy11652 87 LQTLDSLPKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNY-IKEFV---IPNRKHIEKLDLSN-NLISTI-NLNLN 158 (325)
Q Consensus 87 ~~~~~~l~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~-~~~~~---~~~~~~L~~L~l~~-~~~~~~-~~~~~ 158 (325)
+..++.++++|+.|++++|.++.+ ..+.++++|++|++++|. ++.++ +..+++|++|++++ |.++.+ +..|.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 444422566788888888887777 467788888888888886 77666 44678888888887 888877 56788
Q ss_pred CCCCccEEEccCCcCcccccCccCCcccc---EEEcccC-CCcccChhhhhCccccCC-EEEccCCCCcCchHhhhCCCC
Q psy11652 159 NTYYIKDLILSYNQISKLNANTFRNLNVF---RLYLKFN-KISEIHDFAFNGLNSTLE-FLDLENNRLTNINQCFRNLKK 233 (325)
Q Consensus 159 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~ 233 (325)
++++|+.|++.+|.++.++. +...++|+ .|++++| .++.+++..|..++ +|+ .+++++|.+..+|......++
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFTSVQGYAFNGTK 180 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCCCEECTTTTTTCE
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCCcccCHhhcCCCC
Confidence 88889999998888888775 44457776 8999998 88888877888888 898 999998888877764333478
Q ss_pred CCEEeCCCCc-ccccccchhccC-ccCCEEEccCCCCcccCCCCCCCCCCEEECCCCc
Q psy11652 234 LKYLYLHNNN-IEFIQNNTFEHL-VNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289 (325)
Q Consensus 234 L~~L~l~~~~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~ 289 (325)
|+.|++++|+ ++.+++..+.++ ++|+.|++++|.++.+|.. .+++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccCcc
Confidence 8999999884 888877778888 8899999999988888763 56788888887753
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=9.6e-23 Score=172.93 Aligned_cols=220 Identities=20% Similarity=0.336 Sum_probs=123.8
Q ss_pred ccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecC
Q psy11652 26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN 105 (325)
Q Consensus 26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~ 105 (325)
+.++..+++..+.+.+... . ..+ ++|+.|+++++.+..++.+..+++|++|++++|.+..+
T Consensus 18 ~~~l~~l~l~~~~~~~~~~--~-~~l-~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--------------- 78 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT--Q-NEL-NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--------------- 78 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC--H-HHH-TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---------------
T ss_pred HHHHHHHHhcCcccccccc--c-ccc-cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---------------
Confidence 3344455555554444333 1 223 56666666666555555555555555555555554443
Q ss_pred cccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCcc
Q psy11652 106 YLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTF 181 (325)
Q Consensus 106 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 181 (325)
..+..+++|++|++++|.++.++ +..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+++..+
T Consensus 79 -----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 79 -----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp -----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred -----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence 34444555555555555555444 23455555555555555555 3445566666666666666665555443
Q ss_pred C-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCC
Q psy11652 182 R-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259 (325)
Q Consensus 182 ~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 259 (325)
. .++|+.|++++|.+++.++..+..++ +|+.|++++|.+..++. .+..+++|+.|++++|.+.. .++.++
T Consensus 154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~ 225 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSLPEGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIR 225 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTH
T ss_pred ccCccCCEEECCCCCcCccCHHHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHH
Confidence 3 36666666666666666555566666 67777777766665544 45666777777777765442 244566
Q ss_pred EEEccCCCCc-ccCC-CCCC
Q psy11652 260 SISLSGNKLT-RIPD-FIHN 277 (325)
Q Consensus 260 ~L~l~~n~l~-~l~~-~~~~ 277 (325)
.+++.+|.++ .+|. ++.+
T Consensus 226 ~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSCB
T ss_pred HHHHHHHhCCCcccCccccc
Confidence 6666666666 4554 4433
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.7e-21 Score=160.55 Aligned_cols=180 Identities=27% Similarity=0.332 Sum_probs=156.9
Q ss_pred CCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccC
Q psy11652 117 TSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFN 194 (325)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~ 194 (325)
...++++++++.++.+|....++++.|++++|.++.+ +..|.++++|+.|++++|.++.+++..+.. ++|+.|++++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3467888999999988854557899999999999988 677899999999999999998877765544 99999999999
Q ss_pred CCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC
Q psy11652 195 KISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273 (325)
Q Consensus 195 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~ 273 (325)
.++..++..|..++ +|+.|++++|.+..++. .+..+++|++|++++|.++++++..+..+++|+.|++++|.++.+++
T Consensus 94 ~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99998888888898 99999999999997776 56889999999999999999888788899999999999999998876
Q ss_pred --CCCCCCCCEEECCCCcCccccccc
Q psy11652 274 --FIHNKRLSHLNLGYNFLNELILES 297 (325)
Q Consensus 274 --~~~~~~L~~L~l~~n~i~~~~~~~ 297 (325)
+..+++|+.|++++|+++..+.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~~~~ 198 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSRCEI 198 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTSTTH
T ss_pred HHHhCCCCCCEEEeeCCceeCCcccc
Confidence 888999999999999998764443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=9e-22 Score=170.14 Aligned_cols=213 Identities=16% Similarity=0.079 Sum_probs=142.3
Q ss_pred CccEEEccCCCCccc------ccc-cCCccEEEeecCcccch--hhh--ccCCCCCEEEccCCcceee-------cCCCC
Q psy11652 76 SILWLNMDSNLLQTL------DSL-PKTMETLSVANNYLVNY--LEL--NRMTSLKWIVLSNNYIKEF-------VIPNR 137 (325)
Q Consensus 76 ~L~~L~l~~~~~~~~------~~l-~~~L~~L~l~~~~l~~~--~~~--~~~~~L~~L~l~~~~~~~~-------~~~~~ 137 (325)
.++.+.+.++.+... ..+ .++|++|++++|.+... ..+ ..+++|++|++++|.++.. ....+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666555432 111 55677777777766655 333 6677777777777776631 13456
Q ss_pred CCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcc---cccCc--cCCccccEEEcccCCCcccChh---hhhCcc
Q psy11652 138 KHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISK---LNANT--FRNLNVFRLYLKFNKISEIHDF---AFNGLN 208 (325)
Q Consensus 138 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~---~~~~~--~~~~~L~~L~l~~~~l~~~~~~---~~~~~~ 208 (325)
++|++|++++|.++.. +..++++++|+.|++++|.+.. ++... ...++|++|++++|.++..+.. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 7777777777777766 5667777778888887776542 22222 2347788888888877654322 235556
Q ss_pred ccCCEEEccCCCCcCc-hHhhhCC---CCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEE
Q psy11652 209 STLEFLDLENNRLTNI-NQCFRNL---KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLN 284 (325)
Q Consensus 209 ~~L~~L~l~~~~l~~~-~~~~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~ 284 (325)
+|++|++++|.+... |..+..+ ++|++|++++|.++.++... . ++|+.|++++|+++.+|.+..+++|+.|+
T Consensus 225 -~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 225 -QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp -CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred -CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 888888888887755 5545554 58888888888888765532 2 68888888888888776677778888888
Q ss_pred CCCCcCcc
Q psy11652 285 LGYNFLNE 292 (325)
Q Consensus 285 l~~n~i~~ 292 (325)
+++|+++.
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 88888764
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=8e-21 Score=166.97 Aligned_cols=231 Identities=19% Similarity=0.258 Sum_probs=188.1
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc---ccc--cCCc
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL---DSL--PKTM 97 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~---~~l--~~~L 97 (325)
.|.. +++++++++++++|. .+ ++++++|+|++|.++.+| +|.++++|++|++++|.+... ..| ++++
T Consensus 8 ~C~~-~~v~C~~~~Lt~iP~-~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 8 HCSN-RVFLCQESKVTEIPS-DL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp EEET-TEEEEESTTCCSCCT-TC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred EeeC-CEEEecCCCCCccCc-Cc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 4543 678999999999998 45 478999999999999998 799999999999999998654 455 6666
Q ss_pred cE-EEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccC-Cccccc-hhhccCCC-CccEEEc
Q psy11652 98 ET-LSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSN-NLISTI-NLNLNNTY-YIKDLIL 168 (325)
Q Consensus 98 ~~-L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~-~~~~~~-~~~~~~~~-~L~~L~l 168 (325)
++ +.+.+|.+..+ ..+..+++|++|++++|.+..++ .....++..+++.+ +.+..+ +..|..+. .++.|++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 65 55667888887 67899999999999999999777 34556677888855 567777 55676664 6889999
Q ss_pred cCCcCcccccCccCCccccEEEccc-CCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCC-cccc
Q psy11652 169 SYNQISKLNANTFRNLNVFRLYLKF-NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNN-NIEF 246 (325)
Q Consensus 169 ~~~~l~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~-~l~~ 246 (325)
++|.++.++..++...+++.+++.+ |.++.+++..|..++ +|+.|++++|.++.+|. ..+.+|+.|.+.++ .+..
T Consensus 162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCC
T ss_pred ccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc-ccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCc
Confidence 9999999999998889999999975 788999888899998 99999999999999886 34567777776555 4555
Q ss_pred cccchhccCccCCEEEccCC
Q psy11652 247 IQNNTFEHLVNLKSISLSGN 266 (325)
Q Consensus 247 ~~~~~l~~~~~L~~L~l~~n 266 (325)
++. +..+++|+.+++.++
T Consensus 239 lP~--l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 239 LPT--LEKLVALMEASLTYP 256 (350)
T ss_dssp CCC--TTTCCSCCEEECSCH
T ss_pred CCC--chhCcChhhCcCCCC
Confidence 553 778899999999763
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=9e-21 Score=158.85 Aligned_cols=177 Identities=20% Similarity=0.315 Sum_probs=124.4
Q ss_pred cccchhhhhcc-cccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--
Q psy11652 16 GPCSENVQISC-ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-- 90 (325)
Q Consensus 16 ~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-- 90 (325)
..|+.|.++.| ...++++++++.++.+|. .+ .+.++.|++++|.+..++ .|.++++|++|++++|.+..+
T Consensus 2 ~~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~-~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 2 KTCETVTGCTCNEGKKEVDCQGKSLDSVPS-GI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp --CHHHHSSEEEGGGTEEECTTCCCSSCCS-CC----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ccCCCCCceEcCCCCeEEecCCCCccccCC-CC----CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 36888888888 688999999999999998 45 378999999999999887 788999999999999988877
Q ss_pred ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCC
Q psy11652 91 DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYY 162 (325)
Q Consensus 91 ~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 162 (325)
..| +++|+.|++++|.+..+ ..+..+++|++|++++|.++.++ +..+++|++|++++|.++.+ +..|..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 334 67777777777777666 45566677777777777666555 23456666666666666655 334555666
Q ss_pred ccEEEccCCcCcccccCccCC-ccccEEEcccCCCc
Q psy11652 163 IKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKIS 197 (325)
Q Consensus 163 L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~ 197 (325)
|+.|++.+|.++.+++..+.. ++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 666666666555555433322 55555555555544
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=5.8e-22 Score=175.05 Aligned_cols=211 Identities=20% Similarity=0.156 Sum_probs=118.6
Q ss_pred eEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc------cccCCC-CccEEEccCCCCccc--ccc--c-----
Q psy11652 31 SAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE------NLNGFR-SILWLNMDSNLLQTL--DSL--P----- 94 (325)
Q Consensus 31 ~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~-~L~~L~l~~~~~~~~--~~l--~----- 94 (325)
+++++++.++.... .+ ....++|++|++++|.+++.+ .+.+++ +|++|++++|.+... ..+ .
T Consensus 2 ~~~ls~n~~~~~~~-~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHH-HH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHH-HH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 45677777775444 34 344356888888888887664 466677 788888888877765 233 2
Q ss_pred CCccEEEeecCcccch------hhhccC-CCCCEEEccCCcceeec-------CCC-CCCccEEEccCCccccc-----h
Q psy11652 95 KTMETLSVANNYLVNY------LELNRM-TSLKWIVLSNNYIKEFV-------IPN-RKHIEKLDLSNNLISTI-----N 154 (325)
Q Consensus 95 ~~L~~L~l~~~~l~~~------~~~~~~-~~L~~L~l~~~~~~~~~-------~~~-~~~L~~L~l~~~~~~~~-----~ 154 (325)
++|++|++++|.+... ..+... ++|++|++++|.++..+ ... ..+|++|++++|.++.. +
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 7788888888877654 234444 67777777777776433 112 34677777777766532 3
Q ss_pred hhccCCC-CccEEEccCCcCccccc-----CccCC-ccccEEEcccCCCcccChh----hhhCccccCCEEEccCCCCcC
Q psy11652 155 LNLNNTY-YIKDLILSYNQISKLNA-----NTFRN-LNVFRLYLKFNKISEIHDF----AFNGLNSTLEFLDLENNRLTN 223 (325)
Q Consensus 155 ~~~~~~~-~L~~L~l~~~~l~~~~~-----~~~~~-~~L~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~ 223 (325)
..+...+ +|+.|++++|.++.... .+... ++|+.|++++|.++..... .+...+++|+.|++++|.++.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3344443 66666666666553332 11112 3555555555555542221 222211255555555555543
Q ss_pred ch-----HhhhCCCCCCEEeCCCCc
Q psy11652 224 IN-----QCFRNLKKLKYLYLHNNN 243 (325)
Q Consensus 224 ~~-----~~~~~~~~L~~L~l~~~~ 243 (325)
.+ ..+..+++|+.|++++|.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCC
Confidence 21 123444555555555554
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=8.8e-23 Score=181.92 Aligned_cols=223 Identities=15% Similarity=0.173 Sum_probs=114.7
Q ss_pred cCccEEECCCCcccccc------cccCCCCccEEEccCCCCccc-c-----------cc--cCCccEEEeecCcccc---
Q psy11652 53 NKLTTLFIGENHIHQIE------NLNGFRSILWLNMDSNLLQTL-D-----------SL--PKTMETLSVANNYLVN--- 109 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~-~-----------~l--~~~L~~L~l~~~~l~~--- 109 (325)
++|++|++++|.++... .+..+++|++|++++|.+..+ . .+ +++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 67788888877776532 466777888888877654433 1 11 4566666666665554
Q ss_pred --h-hhhccCCCCCEEEccCCcceeec-------CCCC---------CCccEEEccCCccccc--h---hhccCCCCccE
Q psy11652 110 --Y-LELNRMTSLKWIVLSNNYIKEFV-------IPNR---------KHIEKLDLSNNLISTI--N---LNLNNTYYIKD 165 (325)
Q Consensus 110 --~-~~~~~~~~L~~L~l~~~~~~~~~-------~~~~---------~~L~~L~l~~~~~~~~--~---~~~~~~~~L~~ 165 (325)
+ ..+..+++|++|++++|.++... ...+ ++|++|++++|.++.. + ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 1 34555666666666666554211 1111 4555555555555421 2 23444445555
Q ss_pred EEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCC-----cCchHhhhCCCCCCEEeCC
Q psy11652 166 LILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL-----TNINQCFRNLKKLKYLYLH 240 (325)
Q Consensus 166 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-----~~~~~~~~~~~~L~~L~l~ 240 (325)
|++++|.++.... ....+..+..++ +|+.|++++|.+ ..++..+..+++|++|+++
T Consensus 192 L~L~~n~l~~~g~------------------~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 192 VKMVQNGIRPEGI------------------EHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp EECCSSCCCHHHH------------------HHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred EECcCCCCCHhHH------------------HHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 5555554431000 001111334444 555555555555 2344455555566666666
Q ss_pred CCcccccc----cchh--ccCccCCEEEccCCCCcc-----cCC-C-CCCCCCCEEECCCCcCcccc
Q psy11652 241 NNNIEFIQ----NNTF--EHLVNLKSISLSGNKLTR-----IPD-F-IHNKRLSHLNLGYNFLNELI 294 (325)
Q Consensus 241 ~~~l~~~~----~~~l--~~~~~L~~L~l~~n~l~~-----l~~-~-~~~~~L~~L~l~~n~i~~~~ 294 (325)
+|.++... +..+ +.+++|+.|++++|.++. +|. + .++++|+.|++++|+++...
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66555431 1122 125566666666666654 444 2 44566666666666666554
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=7.4e-21 Score=167.96 Aligned_cols=216 Identities=19% Similarity=0.177 Sum_probs=97.5
Q ss_pred ccceEEcCCCceeeecC----CCcCccccc-CccEEECCCCcccccc--cccCC-----CCccEEEccCCCCccc--cc-
Q psy11652 28 LLMSAENEDNQIAELET----ANWSPEIQN-KLTTLFIGENHIHQIE--NLNGF-----RSILWLNMDSNLLQTL--DS- 92 (325)
Q Consensus 28 ~L~~L~l~~~~i~~~~~----~~~~~~~~~-~L~~L~l~~~~~~~~~--~~~~~-----~~L~~L~l~~~~~~~~--~~- 92 (325)
+|++|++++|.++..+. ..+ ..+ + +|++|++++|.++... .+..+ ++|++|++++|.+... ..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l-~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAF-ANT-PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHH-HTC-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHH-HhC-CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 35555555555554443 223 333 3 5555555555555432 22221 5555555555555443 11
Q ss_pred ---c--c-CCccEEEeecCcccch--h----hhcc-CCCCCEEEccCCccee-----ec--CCCC-CCccEEEccCCccc
Q psy11652 93 ---L--P-KTMETLSVANNYLVNY--L----ELNR-MTSLKWIVLSNNYIKE-----FV--IPNR-KHIEKLDLSNNLIS 151 (325)
Q Consensus 93 ---l--~-~~L~~L~l~~~~l~~~--~----~~~~-~~~L~~L~l~~~~~~~-----~~--~~~~-~~L~~L~l~~~~~~ 151 (325)
+ . ++|+.|++++|.+... . .+.. .++|++|++++|.++. ++ .... ++|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 1 1 4555555555555444 1 1222 2355555555555541 11 1122 25555555555554
Q ss_pred cc-hh----hccCC-CCccEEEccCCcCcc-----cccCccCC-ccccEEEcccCCCcccChhh----hhCccccCCEEE
Q psy11652 152 TI-NL----NLNNT-YYIKDLILSYNQISK-----LNANTFRN-LNVFRLYLKFNKISEIHDFA----FNGLNSTLEFLD 215 (325)
Q Consensus 152 ~~-~~----~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~l~~~~~~~----~~~~~~~L~~L~ 215 (325)
.. +. .+..+ ++|+.|++++|.++. ++..+... ++|+.|++++|.++...... +..++ +|+.|+
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~-~L~~L~ 259 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK-HLQTVY 259 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT-TCSEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC-CccEEE
Confidence 43 21 22333 355555555555543 22222222 35555555555555443322 22334 555555
Q ss_pred ccCCCCcC--------chHhhhCCCCCCEEeCCCCcccc
Q psy11652 216 LENNRLTN--------INQCFRNLKKLKYLYLHNNNIEF 246 (325)
Q Consensus 216 l~~~~l~~--------~~~~~~~~~~L~~L~l~~~~l~~ 246 (325)
+++|.+.. ++..+..+++|+.|++++|.+..
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 55554221 11233444445555555555443
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=2.1e-20 Score=159.91 Aligned_cols=187 Identities=24% Similarity=0.339 Sum_probs=130.7
Q ss_pred cEEEccCCCCcccccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccch
Q psy11652 78 LWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTIN 154 (325)
Q Consensus 78 ~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 154 (325)
..+.+....+.+...+ +++|+.|++++|.+..+..+..+++|++|++++|.++.++ +..+++|++|++++|.++.++
T Consensus 27 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG
T ss_pred HHHHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh
Confidence 3344555555444333 7778888888887777766777788888888888777666 667778888888887777664
Q ss_pred hhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCC
Q psy11652 155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL 234 (325)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 234 (325)
. +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.. ..+..++ +|+.|++++|.+..++. +..+++|
T Consensus 107 ~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~~~~~-l~~l~~L 180 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP-LAGLTKL 180 (291)
T ss_dssp G-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred h-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCC-CCCEEEccCCccccchh-hcCCCcc
Confidence 3 677777888888777777653 344457777777777777766 3566666 77777777777776655 6677777
Q ss_pred CEEeCCCCcccccccchhccCccCCEEEccCCCCcccC
Q psy11652 235 KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272 (325)
Q Consensus 235 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~ 272 (325)
+.|++++|.++.++. +..+++|+.|++++|.++..|
T Consensus 181 ~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 181 QNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred CEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence 777777777776543 666777777777777766544
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.9e-20 Score=163.35 Aligned_cols=226 Identities=21% Similarity=0.291 Sum_probs=166.7
Q ss_pred cEEECCCCcccccc-cccCCCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch---hhhccCCCCCE-EEccC
Q psy11652 56 TTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY---LELNRMTSLKW-IVLSN 126 (325)
Q Consensus 56 ~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~---~~~~~~~~L~~-L~l~~ 126 (325)
+.++.+++.++.+| .+ .+++++|++++|.++.+ ..| +++|++|++++|.+... ..+.+++++.+ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777777888887 44 35788899999888888 456 78899999988876543 56778887765 55566
Q ss_pred Ccceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC-CcCcccccCccCC--ccccEEEcccCCCccc
Q psy11652 127 NYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY-NQISKLNANTFRN--LNVFRLYLKFNKISEI 199 (325)
Q Consensus 127 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~--~~L~~L~l~~~~l~~~ 199 (325)
|.++.++ +..+++|++|++++|.++.+ +..+....++..+++.+ +.+..++...+.. ..++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 7888775 56788888899988888877 44555666777787765 4667776655544 5688888888888888
Q ss_pred ChhhhhCccccCCEEEccC-CCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccC-CCCcccCCCCC
Q psy11652 200 HDFAFNGLNSTLEFLDLEN-NRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG-NKLTRIPDFIH 276 (325)
Q Consensus 200 ~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~-n~l~~l~~~~~ 276 (325)
++..|.. . +++.+++.+ |.++.+|. .|..+++|+.|++++|+++.++...+. .|+.|.+.+ +.+..+|.+..
T Consensus 170 ~~~~f~~-~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 170 HNSAFNG-T-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp CTTSSTT-E-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCCTTT
T ss_pred Chhhccc-c-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCCchh
Confidence 7766644 4 788888874 67777775 678888899999998888888765444 555665544 45667777788
Q ss_pred CCCCCEEECCCC
Q psy11652 277 NKRLSHLNLGYN 288 (325)
Q Consensus 277 ~~~L~~L~l~~n 288 (325)
+++|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 888888888763
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=160.41 Aligned_cols=218 Identities=18% Similarity=0.087 Sum_probs=172.4
Q ss_pred cCCccEEEeecCcccch-----hhhccCCCCCEEEccCCccee-ec--C--CCCCCccEEEccCCccccc-h----hhcc
Q psy11652 94 PKTMETLSVANNYLVNY-----LELNRMTSLKWIVLSNNYIKE-FV--I--PNRKHIEKLDLSNNLISTI-N----LNLN 158 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~-----~~~~~~~~L~~L~l~~~~~~~-~~--~--~~~~~L~~L~l~~~~~~~~-~----~~~~ 158 (325)
...++.+.+.++.+... ......++|++|++++|.+.. .| + ..+++|++|++++|.++.. + ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45678888888766543 234455779999999999884 44 3 6789999999999998863 2 4456
Q ss_pred CCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCccc---C-hhhhhCccccCCEEEccCCCCcCchH----hhh
Q psy11652 159 NTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEI---H-DFAFNGLNSTLEFLDLENNRLTNINQ----CFR 229 (325)
Q Consensus 159 ~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~---~-~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~ 229 (325)
.+++|+.|++++|.+..+++..+. .++|++|++++|.+.+. + ...+..++ +|++|++++|.++.++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHh
Confidence 799999999999999887765554 49999999999987642 1 12335777 99999999999987765 357
Q ss_pred CCCCCCEEeCCCCcccccccchhccC---ccCCEEEccCCCCcccCC-CCCCCCCCEEECCCCcCcccccccccchhhhc
Q psy11652 230 NLKKLKYLYLHNNNIEFIQNNTFEHL---VNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELILESSIVENEII 305 (325)
Q Consensus 230 ~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~ 305 (325)
.+++|++|++++|.+++..+..+..+ ++|+.|++++|.++.+|. +. ++|++|++++|++++++.- ....++.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~--~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQP--DELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCT--TSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchh--hhCCCcc
Confidence 88999999999999998755455555 699999999999999987 53 8999999999999998652 3335566
Q ss_pred cccccccccee
Q psy11652 306 DQNMLFNSNAV 316 (325)
Q Consensus 306 ~~~~~~~~~~~ 316 (325)
.+++..|++..
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 78888888754
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=9e-21 Score=165.64 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=104.0
Q ss_pred cchhhhhcc--cccceEEcCCCceeeecCCCcCccc-ccCccEEECCCCcccccc-cccCCCCccEEEccCCCCccc---
Q psy11652 18 CSENVQISC--ILLMSAENEDNQIAELETANWSPEI-QNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLLQTL--- 90 (325)
Q Consensus 18 ~~~~~~~~~--~~L~~L~l~~~~i~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--- 90 (325)
|..|..+.+ ..++.++++++.+. +. .+ ..+ .++++.|+++++.+...+ .+..+++|++|++++|.+...
T Consensus 36 c~~W~~~~~~~~~~~~l~l~~~~~~--~~-~~-~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 36 CKRWYRLASDESLWQTLDLTGKNLH--PD-VT-GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp CHHHHHHHTCSTTSSEEECTTCBCC--HH-HH-HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHHHhcCchhheeeccccccCC--HH-HH-HhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH
Confidence 444544432 24777777777665 22 22 222 267777777777776655 555677777777777765432
Q ss_pred ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCC-ccee--ec--CCCCCCccEEEccCC-ccccc--hhhcc
Q psy11652 91 DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNN-YIKE--FV--IPNRKHIEKLDLSNN-LISTI--NLNLN 158 (325)
Q Consensus 91 ~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~-~~~~--~~--~~~~~~L~~L~l~~~-~~~~~--~~~~~ 158 (325)
..+ +++|++|++++|.+... ..+..+++|++|++++| .++. ++ ...+++|++|++++| .++.. +..+.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 222 56666666666665543 45555666666666666 4442 33 334555666666655 55432 44455
Q ss_pred CCC-CccEEEccCCc--Cc--ccccCccCCccccEEEcccCC-CcccChhhhhCccccCCEEEccCC
Q psy11652 159 NTY-YIKDLILSYNQ--IS--KLNANTFRNLNVFRLYLKFNK-ISEIHDFAFNGLNSTLEFLDLENN 219 (325)
Q Consensus 159 ~~~-~L~~L~l~~~~--l~--~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~ 219 (325)
.++ +|+.|++++|. ++ .++..+..+++|+.|++++|. +++..+..+..++ +|+.|++++|
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~ 257 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRC 257 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCC
Confidence 555 55555555552 22 222222223445555555444 3333333444444 4444444444
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.1e-20 Score=165.04 Aligned_cols=242 Identities=15% Similarity=0.159 Sum_probs=179.6
Q ss_pred CccEEECCCCcccccccccCC--CCccEEEccCCCCccc-ccc--cCCccEEEeecCcccch---hhhccCCCCCEEEcc
Q psy11652 54 KLTTLFIGENHIHQIENLNGF--RSILWLNMDSNLLQTL-DSL--PKTMETLSVANNYLVNY---LELNRMTSLKWIVLS 125 (325)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~-~~l--~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~ 125 (325)
.++.++++++.+... .+..+ ++++.++++++.+... ..+ +++|++|++++|.+... ..+..+++|++|+++
T Consensus 48 ~~~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 48 LWQTLDLTGKNLHPD-VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp TSSEEECTTCBCCHH-HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred hheeeccccccCCHH-HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 488899998877631 44555 7899999999988777 334 89999999999987653 677888999999999
Q ss_pred CCcce-eec--CCCCCCccEEEccCC-cccc--chhhccCCCCccEEEccCC-cCcc--cccCccCCc-cccEEEcccC-
Q psy11652 126 NNYIK-EFV--IPNRKHIEKLDLSNN-LIST--INLNLNNTYYIKDLILSYN-QISK--LNANTFRNL-NVFRLYLKFN- 194 (325)
Q Consensus 126 ~~~~~-~~~--~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~~~-~L~~L~l~~~- 194 (325)
+|.++ ..+ +..+++|++|++++| .++. ++..+.++++|+.|++++| .++. ++..+...+ +|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 99887 333 567899999999998 6775 3666888999999999999 7774 444455567 9999999998
Q ss_pred -CCc-ccChhhhhCccccCCEEEccCCC-Cc-CchHhhhCCCCCCEEeCCCCc-ccccccchhccCccCCEEEccCCCCc
Q psy11652 195 -KIS-EIHDFAFNGLNSTLEFLDLENNR-LT-NINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 195 -~l~-~~~~~~~~~~~~~L~~L~l~~~~-l~-~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
.++ ...+..+..++ +|+.|++++|. ++ ..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++
T Consensus 207 ~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred ccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 454 22344566777 99999999988 55 555678888999999999984 33332235777899999999988 33
Q ss_pred ccCCCCCC-CCCCEEECCCCcCccccccccc
Q psy11652 270 RIPDFIHN-KRLSHLNLGYNFLNELILESSI 299 (325)
Q Consensus 270 ~l~~~~~~-~~L~~L~l~~n~i~~~~~~~~~ 299 (325)
.- .+..+ .+++.|++++|.++++.+....
T Consensus 285 ~~-~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 285 DG-TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TT-CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HH-HHHHHHhhCcceEEecccCccccCCccc
Confidence 11 02222 2466677899999888776544
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=9.3e-21 Score=168.81 Aligned_cols=222 Identities=18% Similarity=0.128 Sum_probs=164.6
Q ss_pred hcccccceEEcCCCceeeecCC----CcCcccccCccEEECCCCccccc----c--------cccCCCCccEEEccCCCC
Q psy11652 24 ISCILLMSAENEDNQIAELETA----NWSPEIQNKLTTLFIGENHIHQI----E--------NLNGFRSILWLNMDSNLL 87 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~--------~~~~~~~L~~L~l~~~~~ 87 (325)
..+++|++|++++|.++..... .+ ..+ ++|++|++++|.+..+ | .+..+++|++|++++|.+
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENI-ASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTT-TTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHH-HhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4788999999999999864332 24 455 8999999999765532 3 357899999999999998
Q ss_pred ccc------ccc--cCCccEEEeecCcccch------hhhccC---------CCCCEEEccCCcce--eec-----CCCC
Q psy11652 88 QTL------DSL--PKTMETLSVANNYLVNY------LELNRM---------TSLKWIVLSNNYIK--EFV-----IPNR 137 (325)
Q Consensus 88 ~~~------~~l--~~~L~~L~l~~~~l~~~------~~~~~~---------~~L~~L~l~~~~~~--~~~-----~~~~ 137 (325)
... ..+ +++|++|++++|.+... ..+..+ ++|++|++++|.++ .++ +..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 873 344 89999999999988644 234444 89999999999986 333 3367
Q ss_pred CCccEEEccCCcccc-----c-hhhccCCCCccEEEccCCcCc-----ccccCccCCccccEEEcccCCCcccC----hh
Q psy11652 138 KHIEKLDLSNNLIST-----I-NLNLNNTYYIKDLILSYNQIS-----KLNANTFRNLNVFRLYLKFNKISEIH----DF 202 (325)
Q Consensus 138 ~~L~~L~l~~~~~~~-----~-~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~~~~----~~ 202 (325)
++|++|++++|.++. + +..+..+++|+.|++++|.++ .++..+...++|+.|++++|.++... +.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 899999999999872 2 447888999999999999884 34544445577888888888877542 23
Q ss_pred hhhC--ccccCCEEEccCCCCcC-----chHhh-hCCCCCCEEeCCCCcccccc
Q psy11652 203 AFNG--LNSTLEFLDLENNRLTN-----INQCF-RNLKKLKYLYLHNNNIEFIQ 248 (325)
Q Consensus 203 ~~~~--~~~~L~~L~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~~~l~~~~ 248 (325)
.+.. ++ +|+.|++++|.++. +|..+ ..+++|++|++++|.+++..
T Consensus 267 ~l~~~~~~-~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSC-CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCC-CeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3322 55 77777777777775 66555 45677777777777776544
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=7.6e-20 Score=156.51 Aligned_cols=192 Identities=21% Similarity=0.277 Sum_probs=107.4
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEEe
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSV 102 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~l 102 (325)
.+.++..+.+....++++.. + ..+ ++|++|++++|.+..++.+..+++|++|++++|.+..+..+ +++|+.|++
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~--~-~~l-~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l 97 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVT--Q-NEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--H-HHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccc--h-hhc-CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEEC
Confidence 44455555566666655444 2 333 67777777777777666666667777777776666655324 556666666
Q ss_pred ecCcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccC
Q psy11652 103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR 182 (325)
Q Consensus 103 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 182 (325)
++|.+..+..+..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+ ..+..
T Consensus 98 ~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~----------------------~l~~l~~L~~L~l~~n~l~~~-~~l~~ 154 (291)
T 1h6t_A 98 DENKVKDLSSLKDLKKLKSLSLEHNGISDIN----------------------GLVHLPQLESLYLGNNKITDI-TVLSR 154 (291)
T ss_dssp CSSCCCCGGGGTTCTTCCEEECTTSCCCCCG----------------------GGGGCTTCCEEECCSSCCCCC-GGGGG
T ss_pred CCCcCCCChhhccCCCCCEEECCCCcCCCCh----------------------hhcCCCCCCEEEccCCcCCcc-hhhcc
Confidence 6655555544555555555555555555444 234444455555555544444 22333
Q ss_pred CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCccccc
Q psy11652 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFI 247 (325)
Q Consensus 183 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~ 247 (325)
+++|+.|++++|.+++.++ +..++ +|+.|++++|.++.++. +..+++|+.|++++|.++..
T Consensus 155 l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred CCCCCEEEccCCccccchh--hcCCC-ccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence 3555555555555555433 44555 66666666666655543 55666666666666665543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=7.9e-20 Score=170.92 Aligned_cols=189 Identities=24% Similarity=0.343 Sum_probs=124.4
Q ss_pred CccEEEccCCCCcccccc--cCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCcccc
Q psy11652 76 SILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLIST 152 (325)
Q Consensus 76 ~L~~L~l~~~~~~~~~~l--~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 152 (325)
++..+.+..+.+.++..+ +++|+.|++++|.+..+..+..+++|+.|++++|.+..++ +..+++|+.|++++|.++.
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC
Confidence 344445555555554333 6777777777777766666777777777777777777666 5667777777777777766
Q ss_pred chhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCC
Q psy11652 153 INLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232 (325)
Q Consensus 153 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 232 (325)
++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.+ ..+..++ +|+.|++++|.+..++. +..++
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~~~~-l~~l~ 175 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP-LAGLT 175 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCSSCCCCCGG-GTTCT
T ss_pred Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcCCcCCCchh-hccCC
Confidence 54 4666777777777777766653 244456777777777776665 3566666 77777777777665554 66667
Q ss_pred CCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccC
Q psy11652 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272 (325)
Q Consensus 233 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~ 272 (325)
+|+.|++++|.+++++ .+..+++|+.|++++|.+...|
T Consensus 176 ~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence 7777777777666653 3566667777777777666444
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.5e-19 Score=164.20 Aligned_cols=179 Identities=19% Similarity=0.229 Sum_probs=88.8
Q ss_pred CccEEEccCCCCccc-ccccCCccEEEeecCcccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccch
Q psy11652 76 SILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTIN 154 (325)
Q Consensus 76 ~L~~L~l~~~~~~~~-~~l~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 154 (325)
+++.|++++|.+..+ ..++++|+.|++++|.++.++ ..+++|++|++++|.++.+|. ...+|++|++++|.++.+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp 136 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLP 136 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCC
Confidence 566666666666555 333555666666655555443 344555555555555554442 1125555555555554443
Q ss_pred hhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCC
Q psy11652 155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL 234 (325)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 234 (325)
. .+++|+.|++++|.++.++. ..++|+.|++++|.+ +.+|. +. ++|
T Consensus 137 ~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L-------------------------~~lp~-l~--~~L 182 (571)
T 3cvr_A 137 E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL-------------------------TFLPE-LP--ESL 182 (571)
T ss_dssp C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-------------------------SCCCC-CC--TTC
T ss_pred C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC-------------------------CCcch-hh--CCC
Confidence 3 34445555555554444433 224444444444444 44443 22 445
Q ss_pred CEEeCCCCcccccccchhccCccC-------CEEEccCCCCcccCC-CCCCCCCCEEECCCCcCccccc
Q psy11652 235 KYLYLHNNNIEFIQNNTFEHLVNL-------KSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 235 ~~L~l~~~~l~~~~~~~l~~~~~L-------~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
+.|++++|.++.++. +.. +| +.|++++|.++.+|. +..+++|+.|++++|++++..+
T Consensus 183 ~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 183 EALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 555555554444333 221 33 555555555555555 4445556666666665555433
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.9e-18 Score=160.07 Aligned_cols=195 Identities=22% Similarity=0.222 Sum_probs=116.7
Q ss_pred ccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccccCCccEEEeecC
Q psy11652 26 CILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN 105 (325)
Q Consensus 26 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~L~~L~l~~~ 105 (325)
+.++++|+++++.++.+|. .+ +++|++|++++|.++.+| ..+++|++|++++|.+..++.+..+|+.|++++|
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~-~l----~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPD-NL----PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVDNN 130 (571)
T ss_dssp HTTCSEEECCSSCCSCCCS-CC----CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred cCCccEEEeCCCCCCccCH-hH----cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECCCC
Confidence 4478888888888888777 33 267888888888888777 5567788888888877766335447777777777
Q ss_pred cccchhhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCcc
Q psy11652 106 YLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLN 185 (325)
Q Consensus 106 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 185 (325)
.++.++. .+++|+.|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|+.|++++|.++.++. +.. +
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~ 201 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--R 201 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--h
Confidence 6666533 45666666666666665554 44566666666666555543 33 555566665555555444 211 3
Q ss_pred ccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhcc
Q psy11652 186 VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH 254 (325)
Q Consensus 186 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 254 (325)
| +...+ .++.|++++|.++.+|..+..+++|+.|++++|.+++..+..+..
T Consensus 202 L-----------------~~~~~-~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 202 N-----------------HHSEE-TEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h-----------------hcccc-cceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3 00011 225566666655555555555566666666666655544434433
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=2.9e-19 Score=167.05 Aligned_cols=190 Identities=23% Similarity=0.300 Sum_probs=110.8
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS 101 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~ 101 (325)
..+..+..+.+..+.+.++.. + ..+ ++|+.|++++|.+..++.+..+++|+.|++++|.+..+..+ +++|+.|+
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~~--~-~~L-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~ 93 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAVT--Q-NEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEEC--H-HHH-TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred HHHHHHHHHhccCCCcccccc--h-hcC-CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEE
Confidence 355566667777777766555 2 334 78888888888887777777778888888887777666335 66666666
Q ss_pred eecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652 102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT 180 (325)
Q Consensus 102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 180 (325)
+++|.+..+..+..+++|+.|++++|.+..++ +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..+++ +
T Consensus 94 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l 171 (605)
T 1m9s_A 94 LDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-L 171 (605)
T ss_dssp CCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-G
T ss_pred CcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-h
Confidence 66666665555566666666666666655554 44455555555555555544 334455555555555555544433 3
Q ss_pred cCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc
Q psy11652 181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222 (325)
Q Consensus 181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 222 (325)
..+++|+.|++++|.+++++ .+..++ +|+.|++++|.+.
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l~--~l~~l~-~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDLR--ALAGLK-NLDVLELFSQECL 210 (605)
T ss_dssp TTCTTCCEEECCSSCCCBCG--GGTTCT-TCSEEECCSEEEE
T ss_pred ccCCCCCEEECcCCCCCCCh--HHccCC-CCCEEEccCCcCc
Confidence 33344444444444444431 234444 4444444444433
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=5.3e-20 Score=172.81 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=42.8
Q ss_pred hcccccceEEcCCCceeeecCC---CcCcccccCccEEECCCCccccc-----c-cccCCCCccEEEccCCCCccc
Q psy11652 24 ISCILLMSAENEDNQIAELETA---NWSPEIQNKLTTLFIGENHIHQI-----E-NLNGFRSILWLNMDSNLLQTL 90 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~ 90 (325)
..|++|++|++++|.+++.... .+ ...++.|++|+++++.++.+ + .+.++++|++|++++|.+..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHEL-AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHH-HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred hhCCCCCEEECccccccCcchhHHHHH-HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 3788999999998887654321 12 12237788888887776522 2 455677788888877765443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-18 Score=141.29 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=123.9
Q ss_pred CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCc
Q psy11652 120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKIS 197 (325)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~ 197 (325)
+.++.+++.++.+|....+++++|++++|.++.+ +..|..+++|+.|++.+|.++.++...+. .++|++|++++|.++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 4566666777777755566788888888887777 55577788888888888877777666544 378888888888887
Q ss_pred ccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCC
Q psy11652 198 EIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIH 276 (325)
Q Consensus 198 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~ 276 (325)
..++..+..++ +|+.|++++|.+..++. .+..+++|++|++++|.++++++..+..+++|+.|++++|.+. ..
T Consensus 90 ~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~ 163 (208)
T 2o6s_A 90 SLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CT 163 (208)
T ss_dssp CCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----CC
T ss_pred ccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----cC
Confidence 77766677777 88888888887776655 4677778888888888877777766777778888888877655 24
Q ss_pred CCCCCEEECCCCcCccccc
Q psy11652 277 NKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 277 ~~~L~~L~l~~n~i~~~~~ 295 (325)
+++|+.|+++.|.+++..+
T Consensus 164 ~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 164 CPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTTTHHHHHHHHHCTTTBB
T ss_pred CCCHHHHHHHHHhCCceee
Confidence 5677777777777775444
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2e-18 Score=152.23 Aligned_cols=172 Identities=26% Similarity=0.319 Sum_probs=112.9
Q ss_pred CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhcc-CCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCC
Q psy11652 120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLN-NTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKI 196 (325)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l 196 (325)
+.++++++.++.+|......++.|++++|.++.+ +..+. ++++|+.|++++|.++.+++..+.. ++|+.|++++|.+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 4566666666666643445566777777777666 44455 6677777777777776666543333 6777777777777
Q ss_pred cccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchh---ccCccCCEEEccCCCCcccC
Q psy11652 197 SEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTF---EHLVNLKSISLSGNKLTRIP 272 (325)
Q Consensus 197 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l---~~~~~L~~L~l~~n~l~~l~ 272 (325)
+.+++..|..++ +|+.|++++|.+..++ ..|..+++|+.|++++|.++.++...+ ..+++|+.|++++|.++.+|
T Consensus 101 ~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 766666666676 7777777777776553 366677777777777777777666555 44677777777777777666
Q ss_pred C--CCCCCC--CCEEECCCCcCcc
Q psy11652 273 D--FIHNKR--LSHLNLGYNFLNE 292 (325)
Q Consensus 273 ~--~~~~~~--L~~L~l~~n~i~~ 292 (325)
. +..++. ++.|++++|++..
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HHHhhhccHhhcceEEecCCCccC
Confidence 4 555555 3667777777653
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6e-18 Score=138.66 Aligned_cols=149 Identities=30% Similarity=0.396 Sum_probs=94.9
Q ss_pred cEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219 (325)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 219 (325)
+.++++++.++.+|..+. ++++.|++.+|.++.+++..+.. ++|+.|++++|.++.+.+..|.+++ +|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCC
Confidence 345555555555543332 45666666666666555533333 6666666666666666666666666 6777777777
Q ss_pred CCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652 220 RLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 220 ~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~ 292 (325)
.+..+|. .|..+++|++|++++|.++++++..+..+++|+.|++++|.++.++. +..+++|+.|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 6666655 35666777777777777776666666667777777777777776665 6667777777777777654
No 103
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=6.7e-19 Score=165.31 Aligned_cols=270 Identities=11% Similarity=0.034 Sum_probs=165.7
Q ss_pred hhcccccceEEcCCCceeeecCCCc---CcccccCccEEECCCCcccccc-cccCCCCccEEEccCC-------------
Q psy11652 23 QISCILLMSAENEDNQIAELETANW---SPEIQNKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSN------------- 85 (325)
Q Consensus 23 ~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~------------- 85 (325)
...+++|++|+++++.++.+....+ ...+ ++|++|++++|.+..++ .+.++++|++|+++..
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhC-CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 3477888888888887763322111 0233 78888888888777766 5566666666666532
Q ss_pred --------------CCcccccc---cCCccEEEeecCcccch---hhhccCCCCCEEEccCCcce--eec--CCCCCCcc
Q psy11652 86 --------------LLQTLDSL---PKTMETLSVANNYLVNY---LELNRMTSLKWIVLSNNYIK--EFV--IPNRKHIE 141 (325)
Q Consensus 86 --------------~~~~~~~l---~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~~~--~~~--~~~~~~L~ 141 (325)
....+..+ +++|++|++++|.+... ..+.++++|++|+++ +.+. .++ ...+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 11112111 56777777777764433 335667777777776 3332 222 23566777
Q ss_pred EEEccC-----------Cccccc--hhhccCCCCccEEEccCCcCcccc-cCccC-CccccEEEcc----cCCCcccC--
Q psy11652 142 KLDLSN-----------NLISTI--NLNLNNTYYIKDLILSYNQISKLN-ANTFR-NLNVFRLYLK----FNKISEIH-- 200 (325)
Q Consensus 142 ~L~l~~-----------~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~-~~~L~~L~l~----~~~l~~~~-- 200 (325)
+|++++ +.++.. ...+.++++|+.|++..+.++... ..+.. +++|+.|+++ .+.+++.+
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 777773 344433 333455777888877666665321 12222 4678888885 44555432
Q ss_pred ---hhhhhCccccCCEEEccCCC--Cc-CchH-hhhCCCCCCEEeCCCCccccc-ccchhccCccCCEEEccCCCCc--c
Q psy11652 201 ---DFAFNGLNSTLEFLDLENNR--LT-NINQ-CFRNLKKLKYLYLHNNNIEFI-QNNTFEHLVNLKSISLSGNKLT--R 270 (325)
Q Consensus 201 ---~~~~~~~~~~L~~L~l~~~~--l~-~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~n~l~--~ 270 (325)
+..+.+++ +|+.|+++++. ++ .... ....+++|++|++++|.+++. .+..+.++++|+.|++++|.++ .
T Consensus 426 ~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 426 NGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 12244566 88888886532 44 2222 334578888888888887752 2334567788999999998876 2
Q ss_pred cCC-CCCCCCCCEEECCCCcCccccc
Q psy11652 271 IPD-FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 271 l~~-~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
++. ...+++|+.|++++|+++....
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred HHHHHHhcCccCeeECcCCcCCHHHH
Confidence 344 5567889999999998876543
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.5e-17 Score=137.16 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=67.8
Q ss_pred CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCc
Q psy11652 120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKIS 197 (325)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~ 197 (325)
+.++.+++.++.+|....++|++|++++|.++.+ +..|.++++|+.|++++|.+..++...+.. ++|+.|++++|.++
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 3444444445554533334555555555555544 444555555555555555554444433222 44444444444444
Q ss_pred ccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCC
Q psy11652 198 EIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268 (325)
Q Consensus 198 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 268 (325)
.+++..|..++ +|+.|++++|.+..+|..+..+++|++|++++|.++.+++..+..+++|+.|++++|.+
T Consensus 102 ~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 102 VLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccChhHhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 44444444444 44444444444444444444444444444444444444333334444444444444433
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.6e-18 Score=136.46 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=97.9
Q ss_pred CCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEc
Q psy11652 137 RKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216 (325)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l 216 (325)
+++|++|++++|.++.++ .+..+++|+.|++.+|.++.++ .+..+++|++|++++|.++...+..+..++ +|+.|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT-TCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC-CCCEEEe
Confidence 445566666666665544 4556666666666666555443 333446677777777766654455566666 7777777
Q ss_pred cCCCCcC-chHhhhCCCCCCEEeCCCCc-ccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEECCCCcCcc
Q psy11652 217 ENNRLTN-INQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 217 ~~~~l~~-~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~i~~ 292 (325)
++|.+.. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|+|..
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 7777763 45567777777777777776 65554 466777778888877777776667777778888888777654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.1e-18 Score=145.27 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=102.4
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccccccCCCCccEEEccCCCCcccccc--cCCccEEE
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLS 101 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~~~L~~L~ 101 (325)
..+.++..++++++.+++++. + ..+ ++|++|++++|.+..++.+..+++|++|++++|.+..+..+ +++|+.|+
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~~--~-~~l-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~ 91 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLVS--Q-KEL-SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEEC--H-HHH-TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEE
T ss_pred HHHHHHHHHHhcCCCcccccc--h-hhc-CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEE
Confidence 356677777777777777763 4 445 78888888888777777677777777777777777666335 66666666
Q ss_pred eecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCc
Q psy11652 102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANT 180 (325)
Q Consensus 102 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 180 (325)
+++|.+..+..+.. ++|++|++++|.++.++ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+..+ ..+
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 66666655533333 56666666666655555 445555555555555555543 345555555555555555544 223
Q ss_pred cCCccccEEEcccCCCcc
Q psy11652 181 FRNLNVFRLYLKFNKISE 198 (325)
Q Consensus 181 ~~~~~L~~L~l~~~~l~~ 198 (325)
...++|+.|++++|.+..
T Consensus 169 ~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEeCCCCcccC
Confidence 333555555555555443
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.1e-17 Score=147.56 Aligned_cols=175 Identities=29% Similarity=0.343 Sum_probs=149.2
Q ss_pred ccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCcc--CCccccEEEcccCCCcccChhhhhCccccCCEEEcc
Q psy11652 140 IEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTF--RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLE 217 (325)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 217 (325)
-+.++++++.++.+|..+ ...++.|++++|.++.++...+ .+++|+.|++++|.++.+++..|..++ +|+.|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC
T ss_pred CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECC
Confidence 468999999999987655 3468999999999999888776 459999999999999999988999998 99999999
Q ss_pred CCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--C---CCCCCCCEEECCCCcCc
Q psy11652 218 NNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--F---IHNKRLSHLNLGYNFLN 291 (325)
Q Consensus 218 ~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~---~~~~~L~~L~l~~n~i~ 291 (325)
+|.+..++. .|..+++|+.|++++|.++.+.+..+.++++|+.|++++|.++.+|. + ..+++|+.|++++|.|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999997765 68899999999999999999988889999999999999999999987 4 57899999999999999
Q ss_pred ccccccccchh--hhcccccccccceee
Q psy11652 292 ELILESSIVEN--EIIDQNMLFNSNAVM 317 (325)
Q Consensus 292 ~~~~~~~~~~~--~~~~~~~~~~~~~~~ 317 (325)
.++........ .+..+++..|.+.+-
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99876443222 235677888887543
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.2e-18 Score=145.17 Aligned_cols=169 Identities=23% Similarity=0.345 Sum_probs=100.8
Q ss_pred CCccEEEeecCcccchhhhccCCCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcC
Q psy11652 95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173 (325)
Q Consensus 95 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 173 (325)
.++..++++++.+..+..+..+++|+.|++++|.++.++ +..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence 334444444444444444455556666666666555555 4455666666666666665533 66666666666666666
Q ss_pred cccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccccchhc
Q psy11652 174 SKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFE 253 (325)
Q Consensus 174 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 253 (325)
+.++.... ++|+.|++++|.+++.+ .+..++ +|+.|++++|.++.++ .+..+++|+.|++++|.++++ ..+.
T Consensus 98 ~~l~~~~~--~~L~~L~L~~N~l~~~~--~l~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~ 169 (263)
T 1xeu_A 98 KNLNGIPS--ACLSRLFLDNNELRDTD--SLIHLK-NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLT 169 (263)
T ss_dssp SCCTTCCC--SSCCEEECCSSCCSBSG--GGTTCT-TCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred CCcCcccc--CcccEEEccCCccCCCh--hhcCcc-cccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhc
Confidence 65554322 66666666666666542 355666 6777777766666654 456666677777777666665 3456
Q ss_pred cCccCCEEEccCCCCcccC
Q psy11652 254 HLVNLKSISLSGNKLTRIP 272 (325)
Q Consensus 254 ~~~~L~~L~l~~n~l~~l~ 272 (325)
.+++|+.|++++|.+...|
T Consensus 170 ~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TCCCCCEEEEEEEEEECCC
T ss_pred cCCCCCEEeCCCCcccCCc
Confidence 6666777777766666444
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=3.6e-17 Score=134.03 Aligned_cols=149 Identities=30% Similarity=0.414 Sum_probs=90.9
Q ss_pred cEEEccCCccccchhhccCCCCccEEEccCCcCccccc-C-ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-N-TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218 (325)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 218 (325)
+.++++++.++.+|..+ ...++.|++++|.++.+++ . +...++|+.|++++|.++.+++..|..++ +|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCC
Confidence 34555555555554333 2234556666665555432 2 22336666666666666666555666666 667777766
Q ss_pred CCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652 219 NRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 219 ~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~ 292 (325)
|.+..++. .+..+++|++|++++|.++++.+..+.++++|+.|++++|.++.+++ +..+++|+.|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66665544 46666777777777777766666666666777777777777776633 6667777777777777654
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=6.4e-19 Score=165.51 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=48.1
Q ss_pred ccccEEEcccCCCcccChhhhh-CccccCCEEEcc--C----CCCcC------chHhhhCCCCCCEEeCCCCcccccccc
Q psy11652 184 LNVFRLYLKFNKISEIHDFAFN-GLNSTLEFLDLE--N----NRLTN------INQCFRNLKKLKYLYLHNNNIEFIQNN 250 (325)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~--~----~~l~~------~~~~~~~~~~L~~L~l~~~~l~~~~~~ 250 (325)
++|+.|.+..+.++......+. .++ +|+.|++. + +.++. ++..+..+++|+.|++++ .++.....
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRP-NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCT-TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCC-CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 4444444444444433333332 244 66666666 2 23331 111244455555555544 33332222
Q ss_pred hhcc-CccCCEEEccCCCCcc--cCC-CCCCCCCCEEECCCCcCcc
Q psy11652 251 TFEH-LVNLKSISLSGNKLTR--IPD-FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 251 ~l~~-~~~L~~L~l~~n~l~~--l~~-~~~~~~L~~L~l~~n~i~~ 292 (325)
.+.. +++|+.|++++|.+++ ++. ...+++|+.|++++|++++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 2222 4555555555555541 111 2345556666666655543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=6.6e-17 Score=133.28 Aligned_cols=154 Identities=27% Similarity=0.334 Sum_probs=134.5
Q ss_pred CCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEc
Q psy11652 138 KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216 (325)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l 216 (325)
..-+.++++++.++.+|..+ .++|+.|++++|.+..+.+..+. +++|+.|++++|.++.+++..|..++ +|+.|++
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~L 95 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDL 95 (229)
T ss_dssp EETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEEC
T ss_pred EeCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCEEEC
Confidence 35677999999999887654 38899999999999988665554 49999999999999999888889998 9999999
Q ss_pred cCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccc
Q psy11652 217 ENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293 (325)
Q Consensus 217 ~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~ 293 (325)
++|.+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++. +..+++|+.|++++|++...
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999998776 57889999999999999998765 56889999999999999998886 88999999999999999865
Q ss_pred cc
Q psy11652 294 IL 295 (325)
Q Consensus 294 ~~ 295 (325)
..
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 43
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.2e-17 Score=133.62 Aligned_cols=149 Identities=23% Similarity=0.359 Sum_probs=127.1
Q ss_pred CEEEccCCcceeecCCCCCCccEEEccCCccccc-h-hhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCC
Q psy11652 120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-N-LNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKI 196 (325)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l 196 (325)
+.++++++.++.+|......+++|++++|.++.+ + ..|..+++|+.|++++|.++.+++..+. .++|+.|++++|.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 5788888888888854566778999999998887 3 4578899999999999999888775444 48999999999999
Q ss_pred cccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652 197 SEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 197 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
+..++..|..++ +|++|++++|.+..+ |..+..+++|++|++++|.++++.+..+..+++|+.|++++|.+.
T Consensus 94 ~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 94 ENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 998888888888 999999999999876 457888999999999999999988888888999999999999887
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=4e-17 Score=133.72 Aligned_cols=149 Identities=26% Similarity=0.367 Sum_probs=115.6
Q ss_pred CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCc
Q psy11652 120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKIS 197 (325)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~ 197 (325)
+.++++++.++.+|....++++.|++++|.++.+ +..|..+++|+.|++++|.++.+.+..+. .++|++|++++|.++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 4667777777777743447788888888888877 55778888888888888888776554444 488888888888888
Q ss_pred ccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652 198 EIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 198 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
.+++..|..++ +|+.|++++|.+..++ ..+..+++|++|++++|.++++++..+..+++|+.|++++|.+.
T Consensus 94 ~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 94 ELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88777777787 8888888888887664 46778888888888888888887777788888888888888776
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=1e-16 Score=130.22 Aligned_cols=153 Identities=25% Similarity=0.346 Sum_probs=134.3
Q ss_pred ccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccC
Q psy11652 140 IEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218 (325)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 218 (325)
-+.++++++.++.+|..+ .++|+.|++.+|.++.++...+. .++|++|++++|.++.+++..|..++ +|++|++++
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCC
Confidence 357888888888886444 46899999999999988877654 49999999999999999888888998 999999999
Q ss_pred CCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 219 NRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 219 ~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
|.+..++. .+..+++|++|++++|.++++++..+..+++|+.|++++|.++.++. +..+++|+.|++++|++....+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99997776 57899999999999999999988888999999999999999998887 8889999999999998876544
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.2e-17 Score=131.99 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=92.6
Q ss_pred CCCCEEEccCCcceeec-CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcc-cccCccCCccccEEEcccC
Q psy11652 117 TSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISK-LNANTFRNLNVFRLYLKFN 194 (325)
Q Consensus 117 ~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~ 194 (325)
++|+.|++++|.+..++ ...+++|++|++++|.++.. ..+..+++|+.|++++|.++. .+..+..+++|+.|++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 34444444444444444 33444555555555543333 245556666666666666654 3333334467777777777
Q ss_pred CCcccChhhhhCccccCCEEEccCCC-CcCchHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652 195 KISEIHDFAFNGLNSTLEFLDLENNR-LTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 195 ~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
.+++..+..+..++ +|+.|++++|. ++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.
T Consensus 123 ~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 123 AHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 77765566777777 88888888886 77776 5777888888888888887765 4677788888888888775
No 116
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=5.7e-16 Score=138.00 Aligned_cols=240 Identities=15% Similarity=0.189 Sum_probs=196.1
Q ss_pred ccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc-cCCccEEEeecCcccch--hhhccCCCCCEE
Q psy11652 50 EIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL-PKTMETLSVANNYLVNY--LELNRMTSLKWI 122 (325)
Q Consensus 50 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L 122 (325)
..+..++.+.+.+ .++.++ +|.++ +|+.+.+..+ +..+ .+| -.+|+.+.+.. .+..+ .+|.++++|+.+
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3447888888875 467776 78886 7999999765 6666 566 56799999986 45555 789999999999
Q ss_pred EccCCcceeec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCccc
Q psy11652 123 VLSNNYIKEFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI 199 (325)
Q Consensus 123 ~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~ 199 (325)
++..+.++.++ .....+|+.+.+..+ ++.+ ..+|.++++|+.+.+..+ ++.+....+..++|+.+.+. +.++.+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNI 262 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEE
Confidence 99999999888 344689999999854 7777 788999999999999875 77888888888999999994 567888
Q ss_pred ChhhhhCccccCCEEEccCCCCc-----CchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC
Q psy11652 200 HDFAFNGLNSTLEFLDLENNRLT-----NINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273 (325)
Q Consensus 200 ~~~~~~~~~~~L~~L~l~~~~l~-----~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~ 273 (325)
...+|.+++ +|+.+.+.++.+. .++. .|..|++|+.+.+. +.+..+....|.+|++|+.+.+..+ ++.++.
T Consensus 263 ~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 263 ASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp CTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred ChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 888999998 9999999887654 3444 88999999999998 4588888889999999999999554 777776
Q ss_pred --CCCCCCCCEEECCCCcCcccccccccc
Q psy11652 274 --FIHNKRLSHLNLGYNFLNELILESSIV 300 (325)
Q Consensus 274 --~~~~~~L~~L~l~~n~i~~~~~~~~~~ 300 (325)
|.++ +|+.+++.+|.+..++...+..
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 8999 9999999999988888776543
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=1.3e-18 Score=163.42 Aligned_cols=287 Identities=14% Similarity=0.090 Sum_probs=150.0
Q ss_pred hcccccceEEcCCCceeeecCCCcCcccccCccEEECCCC-cccc--cc-cccCCCCccEEEccCCCCccc-----ccc-
Q psy11652 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGEN-HIHQ--IE-NLNGFRSILWLNMDSNLLQTL-----DSL- 93 (325)
Q Consensus 24 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~-~~~~~~~L~~L~l~~~~~~~~-----~~l- 93 (325)
..|++|++|+++++.+++.....+ ...+++|++|++++| .++. ++ .+.++++|++|++++|.+.+. ..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELI-AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHH-HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHH-HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 367788888888777664443234 322377888888777 4544 33 334677777777777765543 112
Q ss_pred --cCCccEEEeecCc--ccch---hhhccCCCCCEEEccCC-cceeec--CC----------------------------
Q psy11652 94 --PKTMETLSVANNY--LVNY---LELNRMTSLKWIVLSNN-YIKEFV--IP---------------------------- 135 (325)
Q Consensus 94 --~~~L~~L~l~~~~--l~~~---~~~~~~~~L~~L~l~~~-~~~~~~--~~---------------------------- 135 (325)
+++|+.|+++++. +... .....+++|++|++++| .+..++ ..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 5577777777664 2111 22344577777777665 222222 11
Q ss_pred --------------------------CCCCccEEEccCCccccc--hhhccCCCCccEEEccCCcCcc--cccCccCCcc
Q psy11652 136 --------------------------NRKHIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISK--LNANTFRNLN 185 (325)
Q Consensus 136 --------------------------~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~ 185 (325)
.+++|++|++++|.++.. ...+..+++|+.|++.+| +.. +......+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 234555555555554432 223445555555555555 221 1111112355
Q ss_pred ccEEEccc---------CCCcccChhhhh-CccccCCEEEccCCCCcCc-hHhh-hCCCCCCEEeCC--C----Cccccc
Q psy11652 186 VFRLYLKF---------NKISEIHDFAFN-GLNSTLEFLDLENNRLTNI-NQCF-RNLKKLKYLYLH--N----NNIEFI 247 (325)
Q Consensus 186 L~~L~l~~---------~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~-~~~~-~~~~~L~~L~l~--~----~~l~~~ 247 (325)
|+.|++.+ +.+++.....+. .++ +|+.|.+..+.++.. ...+ ..+++|+.|++. + +.++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 66666522 233322222222 244 666666655555521 1222 246677777776 3 344422
Q ss_pred c-----cchhccCccCCEEEccCCCCcc--cCCCC-CCCCCCEEECCCCcCcccccccc-cchhhhcccccccccc
Q psy11652 248 Q-----NNTFEHLVNLKSISLSGNKLTR--IPDFI-HNKRLSHLNLGYNFLNELILESS-IVENEIIDQNMLFNSN 314 (325)
Q Consensus 248 ~-----~~~l~~~~~L~~L~l~~n~l~~--l~~~~-~~~~L~~L~l~~n~i~~~~~~~~-~~~~~~~~~~~~~~~~ 314 (325)
+ ...+..+++|+.|++++ .++. ++.+. .+++|+.|++++|.+++...... ....++..+++..|.+
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 1 11245567777777766 4442 11122 36778888888888765444322 2234566667777766
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=7.7e-17 Score=140.29 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=158.5
Q ss_pred ccccceEEcCCCcee--eecCCCcCcccccCccEEECCCCcccccccccC--------CCCccEEEccCCCCccc--ccc
Q psy11652 26 CILLMSAENEDNQIA--ELETANWSPEIQNKLTTLFIGENHIHQIENLNG--------FRSILWLNMDSNLLQTL--DSL 93 (325)
Q Consensus 26 ~~~L~~L~l~~~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~--~~l 93 (325)
+++|++|||+++.|. ..+...+ +.++.+.+..+.+..- +|.+ |++|+++++.. .+..+ .+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~-----~~~~~~~~~~~~I~~~-aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY-----PNGKFYIYMANFVPAY-AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS-----GGGCCEEECTTEECTT-TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc-----cccccccccccccCHH-HhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 678999999999998 4443222 2244444444422211 5666 77788887777 66666 456
Q ss_pred --cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcc----eeec---CCCCCCcc-EEEccCCc-cccc-hhhccC
Q psy11652 94 --PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYI----KEFV---IPNRKHIE-KLDLSNNL-ISTI-NLNLNN 159 (325)
Q Consensus 94 --~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~----~~~~---~~~~~~L~-~L~l~~~~-~~~~-~~~~~~ 159 (325)
+++|+.+++++|.+..+ .+|..+.++..+....... ..+. +..+..|+ .+.+.... +... ...-..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 77788888777776666 5666666565555544221 1111 22334444 33333221 1111 111122
Q ss_pred CCCccEEEccCCcCcccccCcc-CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCC-E
Q psy11652 160 TYYIKDLILSYNQISKLNANTF-RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLK-Y 236 (325)
Q Consensus 160 ~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~-~ 236 (325)
..+++.+.+.+.-...-...+. .+++|+.+++++|.++.++..+|.++. +|+++++.++ +..++. .|.+|++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-YLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-CCCEEECCcc-cceehHHHhhCChhccEE
Confidence 4455666665542111111111 147888888888888888888888888 8888888887 666665 788888888 8
Q ss_pred EeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEEC
Q psy11652 237 LYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNL 285 (325)
Q Consensus 237 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l 285 (325)
+.+.. .++.+.+..|.+|++|+.+++.+|.++.++. |.++++|+.+..
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88887 6778888888888899999988888888877 888888888764
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=7.3e-17 Score=140.43 Aligned_cols=118 Identities=18% Similarity=0.073 Sum_probs=95.3
Q ss_pred ccccEEEcccCCCcccChhhhh-CccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCC-E
Q psy11652 184 LNVFRLYLKFNKISEIHDFAFN-GLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK-S 260 (325)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~-~ 260 (325)
.++..+.+.++-. ......+. .++ +|+.+++.+|.+..++. .|..|++|+.+.+..| +..++...|.++++|+ .
T Consensus 202 ~~~~~l~~~~~l~-~~~~~~l~~~~~-~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 202 RDINFLTIEGKLD-NADFKLIRDYMP-NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGCSEEEEEECCC-HHHHHHHHHHCT-TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccceEEEeeeec-HHHHHHHHHhcC-CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 4555666655422 11122222 255 99999999999998887 7999999999999998 8889999999999999 9
Q ss_pred EEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhc
Q psy11652 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEII 305 (325)
Q Consensus 261 L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~ 305 (325)
+++.+ .++.+++ |..|++|+.+++.+|.++.++...+....++.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 99998 8888886 99999999999999999999998877655543
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.9e-15 Score=134.60 Aligned_cols=254 Identities=11% Similarity=0.206 Sum_probs=200.3
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc--cCCcc
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL--PKTME 98 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l--~~~L~ 98 (325)
.|..++.+.+.+ .++.++...| ... +|+.+.+..+ +..++ +|.++ +|+.+.+.. .+..+ ..| +++|+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF-~~~--~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAF-RNS--QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTT-TTC--CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECC-ccCEehHhhc-ccC--CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 446777777774 5788888788 543 6999999765 77777 78876 699999975 56666 566 89999
Q ss_pred EEEeecCcccch--hhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCc
Q psy11652 99 TLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQ 172 (325)
Q Consensus 99 ~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 172 (325)
.+++.+|.+..+ ..+. ..+|+.+.+..+ +..++ +..+.+|+.+.+..+ ++.+ ..+|.+ .+|+.+.+.. .
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 999998888877 4454 689999999744 66666 667889999999874 5666 677877 7899999954 5
Q ss_pred CcccccCccCC-ccccEEEcccCCCc-----ccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccc
Q psy11652 173 ISKLNANTFRN-LNVFRLYLKFNKIS-----EIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE 245 (325)
Q Consensus 173 l~~~~~~~~~~-~~L~~L~l~~~~l~-----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~ 245 (325)
++.++...+.. ++|+.+++.++.+. .+...+|.+++ +|+.+.+.. .+..++. .|.+|.+|+.+.+..+ ++
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 77787777766 89999999887665 57788999998 999999984 4776665 8899999999999665 77
Q ss_pred ccccchhccCccCCEEEccCCCCcccCC--CCCC-CCCCEEECCCCcCcccc
Q psy11652 246 FIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHN-KRLSHLNLGYNFLNELI 294 (325)
Q Consensus 246 ~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~-~~L~~L~l~~n~i~~~~ 294 (325)
.+....|.++ +|+.+++.+|.+..++. |..+ .+++.+.+..+.+....
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~ 386 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYK 386 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHHH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHhh
Confidence 8888889999 99999999999988776 7766 47889988877655443
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.1e-15 Score=119.75 Aligned_cols=135 Identities=21% Similarity=0.203 Sum_probs=66.7
Q ss_pred CCCCccEEEccCCccc--cchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCE
Q psy11652 136 NRKHIEKLDLSNNLIS--TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEF 213 (325)
Q Consensus 136 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 213 (325)
..++|+.|++++|.++ .+|..+..+++|+.|++.+|.++.+ ..+..+++|+.|++++|.++...+..+..++ +|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCE
Confidence 3455555555555555 3344455555555555555555544 3333335555555555555543333444444 5555
Q ss_pred EEccCCCCcCch--HhhhCCCCCCEEeCCCCccccccc---chhccCccCCEEEccCCCCcccC
Q psy11652 214 LDLENNRLTNIN--QCFRNLKKLKYLYLHNNNIEFIQN---NTFEHLVNLKSISLSGNKLTRIP 272 (325)
Q Consensus 214 L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~~n~l~~l~ 272 (325)
|++++|.+..++ ..+..+++|++|++++|.+++.++ ..+..+++|+.|++++|.+..+|
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 555555555443 344445555555555555544433 23444444444444444444433
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.1e-18 Score=160.30 Aligned_cols=180 Identities=20% Similarity=0.198 Sum_probs=134.6
Q ss_pred ccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCc-------------cccc-hhhccCCCCccEEE-ccCCcCccc
Q psy11652 114 NRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNL-------------ISTI-NLNLNNTYYIKDLI-LSYNQISKL 176 (325)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~-------------~~~~-~~~~~~~~~L~~L~-l~~~~l~~~ 176 (325)
...+.|+.|++++|.++.+| +..+.+|+.|+++++. .... |..++++++|+.|+ +..+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 44556666666666666555 4455566666654442 2223 56667777777777 444433322
Q ss_pred ccCc------c--CCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCCCCEEeCCCCcccccc
Q psy11652 177 NANT------F--RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ 248 (325)
Q Consensus 177 ~~~~------~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~ 248 (325)
.... . ....|+.|++++|.+++++. +..++ +|+.|++++|.+..+|..++.+++|+.|++++|.+++++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc
Confidence 2100 0 11358899999999998753 88888 999999999999999999999999999999999999875
Q ss_pred cchhccCccCCEEEccCCCCccc--CC-CCCCCCCCEEECCCCcCcccccccc
Q psy11652 249 NNTFEHLVNLKSISLSGNKLTRI--PD-FIHNKRLSHLNLGYNFLNELILESS 298 (325)
Q Consensus 249 ~~~l~~~~~L~~L~l~~n~l~~l--~~-~~~~~~L~~L~l~~n~i~~~~~~~~ 298 (325)
.++.+++|+.|++++|.++.+ |. +..+++|+.|++++|+++++++...
T Consensus 503 --~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 503 --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp --GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred --ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 688899999999999999987 55 9999999999999999999987653
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1.2e-15 Score=119.38 Aligned_cols=136 Identities=22% Similarity=0.205 Sum_probs=115.6
Q ss_pred cCCCCccEEEccCCcCc--ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC-chHhhhCCCCC
Q psy11652 158 NNTYYIKDLILSYNQIS--KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-INQCFRNLKKL 234 (325)
Q Consensus 158 ~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L 234 (325)
...++|+.|++.+|.++ .++..+..+++|+.|++++|.++.. ..+..++ +|+.|++++|.+.. +|..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34578999999999988 7776655669999999999999887 5777888 99999999999986 77777779999
Q ss_pred CEEeCCCCccccccc-chhccCccCCEEEccCCCCcccCC-----CCCCCCCCEEECCCCcCcccccc
Q psy11652 235 KYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLNLGYNFLNELILE 296 (325)
Q Consensus 235 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-----~~~~~~L~~L~l~~n~i~~~~~~ 296 (325)
++|++++|.+++++. ..+..+++|+.|++++|.++.+|. +..+++|+.|++++|.+..++..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999988753 578888999999999999997765 78889999999999999888764
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=5.4e-18 Score=157.57 Aligned_cols=195 Identities=19% Similarity=0.182 Sum_probs=140.0
Q ss_pred cCccEEECCCCcccccc-cccCCCCccEEEccCCCC-------------ccc--ccc--cCCccEEE-eecCcccchhhh
Q psy11652 53 NKLTTLFIGENHIHQIE-NLNGFRSILWLNMDSNLL-------------QTL--DSL--PKTMETLS-VANNYLVNYLEL 113 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~-------------~~~--~~l--~~~L~~L~-l~~~~l~~~~~~ 113 (325)
++|+.|+|++|.++.+| .+++|++|+.|++++|.. ... ..+ +++|+.|+ ++.+.+
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~------ 422 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL------ 422 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH------
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc------
Confidence 68888888888888888 788888888888865531 000 111 33333333 222211
Q ss_pred ccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEccc
Q psy11652 114 NRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKF 193 (325)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 193 (325)
..|+.+.+.+|.++.++ ...|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus 423 ---~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 423 ---DDLRSKFLLENSVLKME---YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp ---HHHHHHHHHHHHHHHHH---HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred ---chhhhhhhhcccccccC---ccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence 11222233334444444 2248889999998888865 8888999999999999888888777779999999999
Q ss_pred CCCcccChhhhhCccccCCEEEccCCCCcCc--hHhhhCCCCCCEEeCCCCcccccccc---hhccCccCCEEEc
Q psy11652 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNN---TFEHLVNLKSISL 263 (325)
Q Consensus 194 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L~~L~l 263 (325)
|.+++++ .+..++ +|+.|++++|.++.+ |..+..+++|+.|++++|.+++.++. .+..+++|+.|++
T Consensus 496 N~l~~lp--~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALENVD--GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCCCG--GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCc--ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9998864 788888 999999999999877 77889999999999999999887652 2344788888864
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=6.8e-15 Score=117.80 Aligned_cols=127 Identities=28% Similarity=0.337 Sum_probs=90.3
Q ss_pred cEEEccCCcCcccccCccCCccccEEEcccCCCcccChh-hhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCC
Q psy11652 164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDF-AFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHN 241 (325)
Q Consensus 164 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~ 241 (325)
+.++++++.++.+|..+. .+++.|++++|.++.+++. .+..++ +|+.|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 566677776666665443 3677777777777766553 366676 777777777777755 44677777788888888
Q ss_pred CcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccc
Q psy11652 242 NNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293 (325)
Q Consensus 242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~ 293 (325)
|.++++++..+.++++|+.|++++|+++.+++ +..+++|+.|++++|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 87777777667777788888888888875533 77777888888888877654
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.2e-14 Score=114.76 Aligned_cols=132 Identities=26% Similarity=0.380 Sum_probs=112.3
Q ss_pred ccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCC
Q psy11652 163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHN 241 (325)
Q Consensus 163 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~ 241 (325)
.+.+++.++.++.++.... ++++.|++++|.+++.++..+..++ +|+.|++++|.+..++. .+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4677888888877775432 6888999999998888877788888 99999999999987775 568899999999999
Q ss_pred CcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCccccccc
Q psy11652 242 NNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297 (325)
Q Consensus 242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~ 297 (325)
|.++++++..+..+++|+.|++++|.++.+|. +..+++|+.|++++|++....+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 99999888788889999999999999998887 688999999999999998766543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=6.6e-15 Score=112.82 Aligned_cols=127 Identities=19% Similarity=0.207 Sum_probs=80.3
Q ss_pred CCCCccEEEccCCccc--cchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCE
Q psy11652 136 NRKHIEKLDLSNNLIS--TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEF 213 (325)
Q Consensus 136 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 213 (325)
..++++.|++++|.++ .++..+..+++|+.|++++|.++.+ ..+...++|++|++++|.+++..+..+..++ +|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCE
Confidence 3456666777766666 3455566667777777777766655 3344446677777777766664455555566 6777
Q ss_pred EEccCCCCcCch--HhhhCCCCCCEEeCCCCccccccc---chhccCccCCEEEcc
Q psy11652 214 LDLENNRLTNIN--QCFRNLKKLKYLYLHNNNIEFIQN---NTFEHLVNLKSISLS 264 (325)
Q Consensus 214 L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~ 264 (325)
|++++|.++.++ ..+..+++|++|++++|.+++.++ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777666554 456666667777777776666554 455666666666654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=116.01 Aligned_cols=125 Identities=30% Similarity=0.436 Sum_probs=94.1
Q ss_pred cEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCC
Q psy11652 164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNN 242 (325)
Q Consensus 164 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~ 242 (325)
+.+++.++.++.+|..+. ++++.|++++|.++.++ ..|..++ +|+.|++++|.++.++. .|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456677777776665432 57777777777777665 5677777 78888888888776654 5777888888888888
Q ss_pred cccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcc
Q psy11652 243 NIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 243 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~ 292 (325)
.++.+++..+.++++|+.|++++|.++.+|. +..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888777777888888888888888887776 7778888888888888764
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=6.4e-15 Score=116.24 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=66.2
Q ss_pred ccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCC
Q psy11652 157 LNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKL 234 (325)
Q Consensus 157 ~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L 234 (325)
+.++.+|+.|++.+|.++.++. +... ++|+.|++++|.++++ ..+..++ +|+.|++++|.+..+|. .+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCC-CCCEEECCCCcccccCcchhhcCCCC
Confidence 3344455555555555544422 2222 2555555555555544 2344444 55555555555554443 23455555
Q ss_pred CEEeCCCCccccccc-chhccCccCCEEEccCCCCcccCC-----CCCCCCCCEEECCCCcCcc
Q psy11652 235 KYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 235 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-----~~~~~~L~~L~l~~n~i~~ 292 (325)
++|++++|.++.++. ..+..+++|+.|++++|.+..+|. +..+++|+.|++++|.+.+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 555555555544433 234455555555555555555443 4455556666665555443
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.6e-14 Score=110.66 Aligned_cols=124 Identities=25% Similarity=0.252 Sum_probs=93.3
Q ss_pred CCCccEEEccCCcCc--ccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcC-chHhhhCCCCCCE
Q psy11652 160 TYYIKDLILSYNQIS--KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-INQCFRNLKKLKY 236 (325)
Q Consensus 160 ~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~ 236 (325)
.++++.|++.+|.++ .++..+..+++|+.|++++|.++.. ..+..++ +|+.|++++|.+.. +|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467888888888877 5666555558888888888888776 4667777 88888888888876 6666667888888
Q ss_pred EeCCCCcccccc-cchhccCccCCEEEccCCCCcccCC-----CCCCCCCCEEECC
Q psy11652 237 LYLHNNNIEFIQ-NNTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLNLG 286 (325)
Q Consensus 237 L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~l~~l~~-----~~~~~~L~~L~l~ 286 (325)
|++++|.+++++ +..+..+++|+.|++++|.++.++. +..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888887753 2467777888888888888876654 6667788877765
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=2.6e-14 Score=114.37 Aligned_cols=107 Identities=30% Similarity=0.485 Sum_probs=50.3
Q ss_pred CccEEEccCCcCcccccC--ccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEe
Q psy11652 162 YIKDLILSYNQISKLNAN--TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLY 238 (325)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~ 238 (325)
+++.|++.+|.++.++.. +...++|++|++++|.+++..+..|..++ +|+.|++++|.+..++. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 444444444444443332 22224444444444444444444444444 55555555555443332 344445555555
Q ss_pred CCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 239 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
+++|.++++.+..+..+++|+.|++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555555444444445555555555555544
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=6.9e-14 Score=111.94 Aligned_cols=123 Identities=26% Similarity=0.384 Sum_probs=63.7
Q ss_pred EEEccCCcceeecCCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCccc
Q psy11652 121 WIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEI 199 (325)
Q Consensus 121 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~ 199 (325)
.++++++.++.+|....+++++|++++|.++.+|..|.++++|+.|++++|.++.+++..+.. ++|+.|++++|.++.+
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 455555555555532334555555555555555545555555555555555555544433332 5555555555555555
Q ss_pred ChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcc
Q psy11652 200 HDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNI 244 (325)
Q Consensus 200 ~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l 244 (325)
++..|..++ +|+.|++++|.+..++. .+..+++|+.|++++|.+
T Consensus 94 ~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 94 PPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 554555554 55555555555554443 344455555555555544
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=9.9e-15 Score=115.14 Aligned_cols=134 Identities=22% Similarity=0.193 Sum_probs=107.5
Q ss_pred CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCE
Q psy11652 134 IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEF 213 (325)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 213 (325)
+..+.+|+.|++++|.++.++......++|+.|++++|.++.+ ..+..+++|++|++++|.++.+++..+..++ +|+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC-CCCE
Confidence 4467888999999998887754333344899999999988877 4455568899999999999888766677888 8999
Q ss_pred EEccCCCCcCchH--hhhCCCCCCEEeCCCCcccccccc---hhccCccCCEEEccCCCCc
Q psy11652 214 LDLENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQNN---TFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 214 L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L~~L~l~~n~l~ 269 (325)
|++++|.+..+|. .+..+++|+.|++++|.++.++.. .+..+++|+.|++++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999998888876 788888999999999988876653 4778889999999888766
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=2.3e-15 Score=144.00 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=59.1
Q ss_pred cccceEEcCCCceeeecCCCcCcccccCccEEEC-----CCCcccccc-cccCCCCccEEEccCCCCccc-ccc--cCCc
Q psy11652 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFI-----GENHIHQIE-NLNGFRSILWLNMDSNLLQTL-DSL--PKTM 97 (325)
Q Consensus 27 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l-----~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l--~~~L 97 (325)
+.++.|++.++.+...+. .+ ... ..|..+.+ ..+.+...+ .+..++.|+.|++++|.+..+ ..+ +++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~-~~-l~~-l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-AL-LQH-KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchh-hH-hhc-CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 456667776666666554 12 111 12222222 222222222 455566666666666666555 222 5566
Q ss_pred cEEEeecCcccch-hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCc
Q psy11652 98 ETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQIS 174 (325)
Q Consensus 98 ~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 174 (325)
+.|+|++|.++.+ ..+..+++|++|+|++|.++.+| +..+.+|++|++++|.++.+|..|..+++|+.|++++|.+.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 6666666655544 44555566666666666555555 44455555555555555555444555555555555555555
Q ss_pred c
Q psy11652 175 K 175 (325)
Q Consensus 175 ~ 175 (325)
.
T Consensus 330 ~ 330 (727)
T 4b8c_D 330 K 330 (727)
T ss_dssp S
T ss_pred C
Confidence 4
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=2.2e-13 Score=107.47 Aligned_cols=125 Identities=24% Similarity=0.339 Sum_probs=56.1
Q ss_pred CEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccC-CccccEEEcccCCCc
Q psy11652 120 KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFR-NLNVFRLYLKFNKIS 197 (325)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~l~ 197 (325)
+.++++++.++.+|....++++.|++++|.++.+ +..+..+++|+.|++++|.++.++...+. .++|+.|++++|.++
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 3444444555444432334555555555555444 33344445555555555544444433322 244444444444444
Q ss_pred ccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCccc
Q psy11652 198 EIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE 245 (325)
Q Consensus 198 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~ 245 (325)
..++..+..++ +|+.|++++|.+..++. .+..+++|++|++++|.+.
T Consensus 90 ~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 90 SLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 44443344444 44444444444443333 2233444444444444433
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=3.9e-14 Score=135.58 Aligned_cols=113 Identities=31% Similarity=0.425 Sum_probs=50.0
Q ss_pred hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCCCC
Q psy11652 154 NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKK 233 (325)
Q Consensus 154 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 233 (325)
+..+..+..|+.|++++|.+..++..++.+++|+.|++++|.++.++ ..+..++ +|+.|++++|.+..+|..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELP-AEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCC-GGGGGGT-TCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccC-hhhhCCC-CCCEEeCcCCcCCccChhhcCCCC
Confidence 33444455555555555555444444444444444444444444332 2344444 444444444444444444444444
Q ss_pred CCEEeCCCCcccccccchhccCccCCEEEccCCCCc
Q psy11652 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 234 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
|++|++++|.++.++. .++.+++|+.|+|++|.++
T Consensus 295 L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccC
Confidence 4444444444444333 2444444444444444444
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=2.3e-12 Score=114.73 Aligned_cols=276 Identities=15% Similarity=0.260 Sum_probs=165.5
Q ss_pred hhhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc-cC
Q psy11652 21 NVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL-PK 95 (325)
Q Consensus 21 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~ 95 (325)
.+..+|.+|+.+++.. .++.++..+| ..+ .+|+.+++.++ ++.++ +|.+|..|+.+.+..+ +..+ .+| -.
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF-~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAF-ENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTT-TTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHh-hCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 3455777777777763 4777777666 555 67777777643 55555 6777777776666432 2222 333 12
Q ss_pred CccEEEeecC-cccchhhhccCCCCCEEEccCCcceeec---CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccC
Q psy11652 96 TMETLSVANN-YLVNYLELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSY 170 (325)
Q Consensus 96 ~L~~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 170 (325)
.+....+... ......++.++++|+.+.+..+. ..++ +..+.+|+.+.+..+ ++.+ ..+|.++..|+.+.+..
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 2222222111 11111567777888888776442 3333 556677777777654 4444 55566666666666544
Q ss_pred CcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCc--------------------CchH-hhh
Q psy11652 171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT--------------------NINQ-CFR 229 (325)
Q Consensus 171 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~--------------------~~~~-~~~ 229 (325)
+ ...+....+...+++.+.+... ++.+....|..+. .++.+.+..+... .++. .+.
T Consensus 218 ~-~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~-~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~ 294 (394)
T 4fs7_A 218 S-LYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCT-DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFY 294 (394)
T ss_dssp T-CCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCS-SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTT
T ss_pred C-ceEeehhhcccCCCceEEECCC-ceecccccccccc-cceeEEcCCCcceeeccccccccccceeccCceeecccccc
Confidence 3 2223333333455555555432 2222233344443 4444444332110 1222 567
Q ss_pred CCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhccc
Q psy11652 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQ 307 (325)
Q Consensus 230 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~ 307 (325)
.+.+|+.+.+..+ +..+....|.++.+|+.+++..+ ++.+.. |.+|++|+.+.+..+ ++.++...+.....+..+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 8888988888754 67777888999999999999654 777776 999999999999876 899999888777666666
Q ss_pred cc
Q psy11652 308 NM 309 (325)
Q Consensus 308 ~~ 309 (325)
.+
T Consensus 372 ~l 373 (394)
T 4fs7_A 372 EL 373 (394)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=3.9e-12 Score=113.33 Aligned_cols=255 Identities=13% Similarity=0.185 Sum_probs=163.8
Q ss_pred cchhhhhcccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc------------------------cccC
Q psy11652 18 CSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE------------------------NLNG 73 (325)
Q Consensus 18 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------~~~~ 73 (325)
....+..+|++|+.+++.++ ++.++...| ... ..|+.+.+..+ +..++ +|.+
T Consensus 85 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF-~~c-~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~ 160 (394)
T 4fs7_A 85 IGEFAFENCSKLEIINIPDS-VKMIGRCTF-SGC-YALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFAT 160 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTT-TTC-TTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTT
T ss_pred cchhHhhCCCCCcEEEeCCC-ceEccchhh-ccc-ccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcc
Confidence 34456678999999999754 888888777 655 77777766533 22222 4555
Q ss_pred CCCccEEEccCCCCccc--ccc--cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec-CCCCCCccEEEcc
Q psy11652 74 FRSILWLNMDSNLLQTL--DSL--PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLS 146 (325)
Q Consensus 74 ~~~L~~L~l~~~~~~~~--~~l--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~ 146 (325)
|.+|+.+.+..+ +..+ ..| +.+|+.+.+..+ +..+ .++.++..|+.+.+..+....-. .....+|+.+.+.
T Consensus 161 c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip 238 (394)
T 4fs7_A 161 CESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIP 238 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEEC
T ss_pred cCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEEC
Confidence 555555555432 2222 233 455555555443 2222 44555555555544433222111 2344566666665
Q ss_pred CCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc
Q psy11652 147 NNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224 (325)
Q Consensus 147 ~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 224 (325)
.. ++.+ ...|.++..++.+.+..+ ...+....+.. ..++.+......+ +...|..+. +|+.+.+..+ +..+
T Consensus 239 ~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~-~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 239 DS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCS-SLTEVKLLDS-VKFI 311 (394)
T ss_dssp TT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCT-TCCEEEECTT-CCEE
T ss_pred CC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceee---ccccccccc-cccccccccc-ccee
Confidence 43 2333 456777888888888765 33444444444 7777777665443 344677787 9999998764 5555
Q ss_pred hH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCC
Q psy11652 225 NQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGY 287 (325)
Q Consensus 225 ~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~ 287 (325)
+. +|..|.+|+.+.+..+ ++.+....|.+|.+|+.+.+..+ ++.++. |.+|++|+.+++..
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 54 7889999999999754 77888889999999999999776 777776 99999999999864
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=2.4e-11 Score=108.16 Aligned_cols=256 Identities=13% Similarity=0.242 Sum_probs=134.4
Q ss_pred hhhccc-ccceEEcCCCceeeecCCCcCcccccCccEEECCCC---cccccc--cccCCCCccEEEccCCCCccc--ccc
Q psy11652 22 VQISCI-LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGEN---HIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL 93 (325)
Q Consensus 22 ~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l 93 (325)
+..+|+ .|+.+.+..+ ++.++..+| ... .+|+.+.+..+ .++.++ +|.+|.+|+.+.+..+ +..+ ..|
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF-~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAF-YNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTT-TTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHh-hCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 344564 4777777643 777777677 555 77777777654 255555 6777777777666543 3334 444
Q ss_pred --cCCccEEEeecCcccch--hhhccCCCCCEEEccCCcceeec--CCCCCCccEEEccCCccccchhhccCCCCccEEE
Q psy11652 94 --PKTMETLSVANNYLVNY--LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI 167 (325)
Q Consensus 94 --~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 167 (325)
+.+|+.+.+..+ +..+ ..+..+..|+.+.+..+ ++.+. .....+|+.+.+..+....-..+|.++.+++...
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceec
Confidence 677777777543 2233 56777777777777543 33333 2234567777776543222245566666666555
Q ss_pred ccCCcCc------------------------------------ccccCccCC-ccccEEEcccCCCcccChhhhhCcccc
Q psy11652 168 LSYNQIS------------------------------------KLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNST 210 (325)
Q Consensus 168 l~~~~l~------------------------------------~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~ 210 (325)
....... .+....+.. ..|+.+.+..+ +..+...+|..+. .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~-~ 289 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCP-A 289 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCT-T
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCccccccc-c
Confidence 4332221 112222222 44444444332 1223334444444 5
Q ss_pred CCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCC
Q psy11652 211 LEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGY 287 (325)
Q Consensus 211 L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~ 287 (325)
|+.+.+.. .+..++. .|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+.+..+ ++.+.. |.+|++|+.+++.+
T Consensus 290 L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 55555432 2333332 4555555555555432 44444455555555555555332 444443 55555555555554
Q ss_pred C
Q psy11652 288 N 288 (325)
Q Consensus 288 n 288 (325)
+
T Consensus 367 ~ 367 (394)
T 4gt6_A 367 S 367 (394)
T ss_dssp C
T ss_pred c
Confidence 4
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=6.9e-15 Score=118.37 Aligned_cols=135 Identities=25% Similarity=0.244 Sum_probs=84.5
Q ss_pred cchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchHhhhCC
Q psy11652 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNL 231 (325)
Q Consensus 152 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 231 (325)
.++..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ ..+..++ +|+.|++++|.+..+| .+..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~-~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE-NLDAVAD-TLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCS-SHHHHHH-HCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccccc-chhhcCC-cCCEEECcCCcCCcCC-ccccC
Confidence 33445666777777777777666655 3434467777777777666554 2444455 7777777777776665 46666
Q ss_pred CCCCEEeCCCCccccccc-chhccCccCCEEEccCCCCccc-CC-----------CCCCCCCCEEECCCCcCcc
Q psy11652 232 KKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRI-PD-----------FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 232 ~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~l-~~-----------~~~~~~L~~L~l~~n~i~~ 292 (325)
++|++|++++|.++.++. ..+..+++|+.|++++|.+... |. +..+++|+.|+ +++++.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777777777777665443 3556667777777777766522 11 45667777765 555554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.6e-12 Score=100.59 Aligned_cols=107 Identities=25% Similarity=0.315 Sum_probs=75.9
Q ss_pred cccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCc-hHhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEc
Q psy11652 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263 (325)
Q Consensus 185 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 263 (325)
..+.++++++.++.++... +.+++.|++++|.+..+ +..+..+++|++|++++|+++++++..+.++++|+.|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3456666666666654321 22677777777777765 345677777778888877777777766777788888888
Q ss_pred cCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 264 SGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 264 ~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
++|+++.+++ +..+++|+.|++++|+++....
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 8888887765 7777888888888888776654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3.9e-12 Score=99.92 Aligned_cols=105 Identities=25% Similarity=0.347 Sum_probs=70.2
Q ss_pred cEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCch-HhhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccC
Q psy11652 187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG 265 (325)
Q Consensus 187 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 265 (325)
+.++++++.++.++.. + +++++.|++++|.+..++ ..+..+++|++|++++|+++++++..+..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~~iP~~-~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-I---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSC-C---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCC-c---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4566666666555431 1 126677777777666553 3566677777777777777777666666777777777777
Q ss_pred CCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 266 NKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 266 n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
|.++.+|+ +..+++|+.|++++|++...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 77777665 6777777777777777776654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4.2e-12 Score=99.37 Aligned_cols=104 Identities=28% Similarity=0.351 Sum_probs=76.5
Q ss_pred ccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCC
Q psy11652 163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHN 241 (325)
Q Consensus 163 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~ 241 (325)
.+.++++++.++.++..+. ++++.|++++|.++++++..|..++ +|+.|++++|.+..++. .|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777777777665442 6777777777777777777777777 78888888777776665 456777788888888
Q ss_pred CcccccccchhccCccCCEEEccCCCCc
Q psy11652 242 NNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
|.++++++..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8777777766777778888888887776
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=4.8e-14 Score=113.39 Aligned_cols=129 Identities=26% Similarity=0.332 Sum_probs=94.5
Q ss_pred CCCCCccEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEE
Q psy11652 135 PNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214 (325)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 214 (325)
..+++|++|++++|.++.++ .+.++++|+.|++++|.++.++......++|+.|++++|.+++++ .+..++ +|+.|
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~-~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLV-NLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHH-HSSEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCC-CCCEE
Confidence 35666777777777666665 667777888888888877776654433478888888888887753 577777 88888
Q ss_pred EccCCCCcCchH--hhhCCCCCCEEeCCCCccccccc----------chhccCccCCEEEccCCCCc
Q psy11652 215 DLENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQN----------NTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 215 ~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~----------~~l~~~~~L~~L~l~~n~l~ 269 (325)
++++|.+..++. .+..+++|++|++++|.+.+..+ ..+..+++|+.|+ ++.++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 888888887665 67888889999998888765433 2367788888886 55554
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=6.9e-12 Score=98.49 Aligned_cols=106 Identities=25% Similarity=0.320 Sum_probs=78.9
Q ss_pred cEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCC
Q psy11652 164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNN 242 (325)
Q Consensus 164 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~ 242 (325)
+.++++++.++.+|..+. ++++.|++++|.++++++..|..++ +|+.|++++|.+..+|. .|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 567777777777766443 6777788888877777777777777 78888888888777765 4567788888888888
Q ss_pred cccccccchhccCccCCEEEccCCCCcccC
Q psy11652 243 NIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272 (325)
Q Consensus 243 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~ 272 (325)
.++.+++..+..+++|+.|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888777766777788888888888777433
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=9.8e-11 Score=104.20 Aligned_cols=261 Identities=14% Similarity=0.264 Sum_probs=164.3
Q ss_pred cchhhhhcccccceEEcCCC---ceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--
Q psy11652 18 CSENVQISCILLMSAENEDN---QIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL-- 90 (325)
Q Consensus 18 ~~~~~~~~~~~L~~L~l~~~---~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-- 90 (325)
....+..+|++|+.+.+..+ .++.++..+| ... ..|+.+.+..+ +..++ +|.+|.+|+.+.+... +..+
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c-~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~ 153 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFC-SELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVAD 153 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTC-TTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEechhhc-hhc-ccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecc
Confidence 33456678999999999765 4778888777 555 77887777543 55555 6777888888887543 2223
Q ss_pred ccc--cCCccEEEeecCcccch------------------------hhhccCCCCCEEEccCCcceeec-----------
Q psy11652 91 DSL--PKTMETLSVANNYLVNY------------------------LELNRMTSLKWIVLSNNYIKEFV----------- 133 (325)
Q Consensus 91 ~~l--~~~L~~L~l~~~~l~~~------------------------~~~~~~~~L~~L~l~~~~~~~~~----------- 133 (325)
..| +..|+.+.+..+ +..+ .++..+..++...........+.
T Consensus 154 ~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (394)
T 4gt6_A 154 GMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGD 232 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSC
T ss_pred cceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccc
Confidence 333 556666665443 2222 23333333333332221111000
Q ss_pred -----CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhC
Q psy11652 134 -----IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNG 206 (325)
Q Consensus 134 -----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~ 206 (325)
......+..+.+.. .++.+ ..+|.++..|+.+.+... +..+....+.. ..|+.+.+. +.++.+...+|.+
T Consensus 233 ~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~ 309 (394)
T 4gt6_A 233 YALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAG 309 (394)
T ss_dssp EEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTT
T ss_pred ccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecC
Confidence 01122233333322 23334 567899999999999765 44566656555 899999996 4677788889999
Q ss_pred ccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCCCCCCCCCCEEEC
Q psy11652 207 LNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNL 285 (325)
Q Consensus 207 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l 285 (325)
+. +|+.+.+..+ +..+.. +|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+++.++... +..+..+.+|+.+.+
T Consensus 310 c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 310 CI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-WNAISTDSGLQNLPV 385 (394)
T ss_dssp CT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-HHTCBCCCCC-----
T ss_pred CC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-hhhhhccCCCCEEEe
Confidence 98 9999999764 555554 7999999999999755 77888889999999999999887543 223667888999888
Q ss_pred CCCcC
Q psy11652 286 GYNFL 290 (325)
Q Consensus 286 ~~n~i 290 (325)
..+.+
T Consensus 386 ~~~~~ 390 (394)
T 4gt6_A 386 APGSI 390 (394)
T ss_dssp -----
T ss_pred CCCCE
Confidence 76543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=7.8e-13 Score=116.60 Aligned_cols=153 Identities=15% Similarity=0.165 Sum_probs=99.8
Q ss_pred CCCCCEEEccCCcceeec--------CCCCCCccEEEccCCccccc--hhhccCCCCccEEEccCCcCcccccCcc----
Q psy11652 116 MTSLKWIVLSNNYIKEFV--------IPNRKHIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISKLNANTF---- 181 (325)
Q Consensus 116 ~~~L~~L~l~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~---- 181 (325)
.+.|+.|++++|.++... .....+|++|++++|.++.. ......+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467888888888876322 12346888888888887654 2223345678888888887763222111
Q ss_pred --CCccccEEEcccCCCcccChh----hhhCccccCCEEEccCCCCcC-----chHhhhCCCCCCEEeCCCCccccccc-
Q psy11652 182 --RNLNVFRLYLKFNKISEIHDF----AFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIEFIQN- 249 (325)
Q Consensus 182 --~~~~L~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~- 249 (325)
..++|+.|++++|.++..... .+...+ +|++|++++|.++. ++..+..+++|+.|++++|.++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 236788888888887653322 335566 78888888887763 23356667778888888887775322
Q ss_pred ---chhccCccCCEEEccCCCCc
Q psy11652 250 ---NTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 250 ---~~l~~~~~L~~L~l~~n~l~ 269 (325)
..+...++|+.|++++|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 23344577888888888877
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=1.1e-09 Score=96.88 Aligned_cols=263 Identities=13% Similarity=0.172 Sum_probs=162.4
Q ss_pred cccccceEEcCCCceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc-cCCccE
Q psy11652 25 SCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL-PKTMET 99 (325)
Q Consensus 25 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~~L~~ 99 (325)
.+.+|+.+.+. ..++.++..+| ..+ .+|+.+.|..+ ++.++ +|.+| +|+.+.+..+ +..+ .+| ..+|+.
T Consensus 44 ~~~~i~~v~ip-~~vt~Ig~~aF-~~C-~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVN-SGITSIGEANF-NSC-YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGCSEEEEC-TTEEEECTTTT-TTC-TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred cccCCEEEEeC-CCccChHHHHh-hCC-CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence 56678888886 45888888777 665 78888888644 66666 77777 5666766432 4444 444 456777
Q ss_pred EEeecCcccch--hh----------------------hccCCCCCEEEccCCcceee---------------cCCCCCCc
Q psy11652 100 LSVANNYLVNY--LE----------------------LNRMTSLKWIVLSNNYIKEF---------------VIPNRKHI 140 (325)
Q Consensus 100 L~l~~~~l~~~--~~----------------------~~~~~~L~~L~l~~~~~~~~---------------~~~~~~~L 140 (325)
+.+..+. ..+ .. +..+..++.+.+........ .......+
T Consensus 118 i~lp~~~-~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 118 FEFPGAT-TEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp EECCTTC-CEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred ccCCCcc-ccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 7765431 111 22 23333333333322111000 01122233
Q ss_pred cEEEccCCccccchhhccCCCCccEEEccCCcCcccccCccCC-ccccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN-LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219 (325)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 219 (325)
..+.+...........+..+.+++.+.+..+ +..+....+.. ..|+.+.+..+ ++.+...+|..+. +++.+.+..+
T Consensus 197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~ 273 (379)
T 4h09_A 197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK 273 (379)
T ss_dssp SEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC
T ss_pred cccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc
Confidence 3333332221111344566677777777554 45555544444 78888888764 6666667777777 8888887653
Q ss_pred CCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccc
Q psy11652 220 RLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILE 296 (325)
Q Consensus 220 ~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~ 296 (325)
+..++. .|..|.+|+.+.+.++.++.+....|.+|.+|+.+.+..+ ++.+.. |.+|++|+.+.+..+ ++.|...
T Consensus 274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~ 350 (379)
T 4h09_A 274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESG 350 (379)
T ss_dssp -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchh
Confidence 444443 6788888888888888888888888888888888888644 666765 888888888888643 7777766
Q ss_pred cccc
Q psy11652 297 SSIV 300 (325)
Q Consensus 297 ~~~~ 300 (325)
.+..
T Consensus 351 aF~~ 354 (379)
T 4h09_A 351 AFEG 354 (379)
T ss_dssp TTTT
T ss_pred HhhC
Confidence 6544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.8e-12 Score=114.23 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=88.0
Q ss_pred cCCccEEEeecCcccch--h----hhc-cCCCCCEEEccCCcceee--c--CCCCCCccEEEccCCccccc-hhh----c
Q psy11652 94 PKTMETLSVANNYLVNY--L----ELN-RMTSLKWIVLSNNYIKEF--V--IPNRKHIEKLDLSNNLISTI-NLN----L 157 (325)
Q Consensus 94 ~~~L~~L~l~~~~l~~~--~----~~~-~~~~L~~L~l~~~~~~~~--~--~~~~~~L~~L~l~~~~~~~~-~~~----~ 157 (325)
.+.|+.|++++|.++.. . .+. ..++|++|++++|.++.. . ...+.+|++|++++|.++.. ... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45556666665555443 1 111 124566666666655421 1 11234566666666666543 222 2
Q ss_pred -cCCCCccEEEccCCcCcc-----cccCccCCccccEEEcccCCCcccC----hhhhhCccccCCEEEccCCCCcC----
Q psy11652 158 -NNTYYIKDLILSYNQISK-----LNANTFRNLNVFRLYLKFNKISEIH----DFAFNGLNSTLEFLDLENNRLTN---- 223 (325)
Q Consensus 158 -~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~~~l~~---- 223 (325)
...++|+.|++++|.++. +...+...++|++|++++|.+++.. ...+...+ +|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHHH
Confidence 235566777777666653 2222223466777777777766433 23444555 78888888887763
Q ss_pred -chHhhhCCCCCCEEeCCCCcccccccchhc
Q psy11652 224 -INQCFRNLKKLKYLYLHNNNIEFIQNNTFE 253 (325)
Q Consensus 224 -~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 253 (325)
++..+..+++|++|++++|.++......+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 333455677888888888887754443343
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=1.1e-08 Score=90.30 Aligned_cols=247 Identities=14% Similarity=0.238 Sum_probs=166.2
Q ss_pred ccCccEEECCCCcccccc--cccCCCCccEEEccCCCCccc--ccc-cCCccEEEeecCcccch--hhhccCCCCCEEEc
Q psy11652 52 QNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQTL--DSL-PKTMETLSVANNYLVNY--LELNRMTSLKWIVL 124 (325)
Q Consensus 52 ~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l 124 (325)
..+|+.+.+.. .++.++ +|.+|.+|+.+.+..+ +..+ .+| -.+|+.+.+..+ +..+ .++.. .+|+.+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceecc-CCcccccC
Confidence 37899999974 478887 9999999999999754 6666 566 447888887654 4444 45554 47999988
Q ss_pred cCCcceeec--CCCCCCccEEEccCCccccc-hhhccCCCCccEEEccCCc-----------------------------
Q psy11652 125 SNNYIKEFV--IPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQ----------------------------- 172 (325)
Q Consensus 125 ~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~----------------------------- 172 (325)
..+ +..+. .....+++.+.+..+ ++.+ ...|..+.+++.+.+....
T Consensus 121 p~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp CTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred CCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 654 22222 222234555544332 2222 3344444544444443221
Q ss_pred ------CcccccCccC-CccccEEEcccCCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCCCcc
Q psy11652 173 ------ISKLNANTFR-NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNI 244 (325)
Q Consensus 173 ------l~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l 244 (325)
...+....+. ...++.+.+..+ +..+...+|..+. .|+.+.+..+ +..+.. .+..+.+|+.+.+..+ +
T Consensus 199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred cccccceeEEeecccccccccceeeeccc-eeEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence 1112222222 256667766543 4555566777777 8999988765 454543 6788999999998654 6
Q ss_pred cccccchhccCccCCEEEccCCCCcccCC--CCCCCCCCEEECCCCcCcccccccccchhhhccccc
Q psy11652 245 EFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNM 309 (325)
Q Consensus 245 ~~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~~~~ 309 (325)
..+....|.++.+|+.+.+.++.++.++. |.+|.+|+.+.+.. .++.|....+.....+..+.+
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 67777789999999999999999998887 99999999999975 488999988877777666665
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=3.1e-10 Score=99.18 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=57.3
Q ss_pred EEEccCC-cCcccccCccCCccccEEEccc-CCCcccChhhhhCccccCCEEEccCCCCcCchH-hhhCCCCCCEEeCCC
Q psy11652 165 DLILSYN-QISKLNANTFRNLNVFRLYLKF-NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHN 241 (325)
Q Consensus 165 ~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~ 241 (325)
.+++.++ .++.+|. +...++|+.|++++ |.++.+++..|..++ +|+.|++++|.+..++. .|..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 5666555 44445666666664 666666555555555 66666666665554433 455556666666666
Q ss_pred CcccccccchhccCccCCEEEccCCCCc
Q psy11652 242 NNIEFIQNNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 242 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 269 (325)
|.++++++..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 665555554444433 555666555555
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=3e-10 Score=99.27 Aligned_cols=105 Identities=23% Similarity=0.275 Sum_probs=91.5
Q ss_pred cEEEcccC-CCcccChhhhhCccccCCEEEccC-CCCcCchH-hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEc
Q psy11652 187 FRLYLKFN-KISEIHDFAFNGLNSTLEFLDLEN-NRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263 (325)
Q Consensus 187 ~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 263 (325)
..++++++ .++.++. +..+. +|+.|++++ |.+..++. .|..+++|+.|++++|.++++++..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 45788887 8888765 77887 999999996 99998774 7899999999999999999999989999999999999
Q ss_pred cCCCCcccCC--CCCCCCCCEEECCCCcCccccc
Q psy11652 264 SGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295 (325)
Q Consensus 264 ~~n~l~~l~~--~~~~~~L~~L~l~~n~i~~~~~ 295 (325)
++|+++.+|+ +..++ |+.|++.+|++.....
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 9999999987 55554 9999999999986543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=3.6e-09 Score=92.58 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=91.0
Q ss_pred hhhccCCCCccEEEccCCcCcccccCccCCccccEEEcccCCCcccChhhhh--CccccCCEEEccCC--C------CcC
Q psy11652 154 NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFN--GLNSTLEFLDLENN--R------LTN 223 (325)
Q Consensus 154 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~~L~~L~l~~~--~------l~~ 223 (325)
...+..+|+|+.|.+.++.-..++. ...++|+.|++..+.++......+. .+| +|+.|+++.+ . +..
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEeccccccccchhHHH
Confidence 3445667888888887763122332 2368899999988877654444444 567 8999988531 1 112
Q ss_pred chHhh--hCCCCCCEEeCCCCcccccccchh---ccCccCCEEEccCCCCcc-----cCC-CCCCCCCCEEECCCCcCcc
Q psy11652 224 INQCF--RNLKKLKYLYLHNNNIEFIQNNTF---EHLVNLKSISLSGNKLTR-----IPD-FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 224 ~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l---~~~~~L~~L~l~~n~l~~-----l~~-~~~~~~L~~L~l~~n~i~~ 292 (325)
+...+ ..+++|++|++.+|.++......+ +.+++|+.|+++.|.++. ++. +.++++|+.|++++|.|+.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 22222 357899999999888764222122 246899999999998884 333 4567899999999998775
Q ss_pred cc
Q psy11652 293 LI 294 (325)
Q Consensus 293 ~~ 294 (325)
..
T Consensus 322 ~~ 323 (362)
T 2ra8_A 322 EM 323 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=4.1e-08 Score=85.86 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=32.6
Q ss_pred hhhccCCCCCEEEccCCcceeecCCCCCCccEEEccCCccccc-hhhc--cCCCCccEEEcc
Q psy11652 111 LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNL--NNTYYIKDLILS 169 (325)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~--~~~~~L~~L~l~ 169 (325)
..+..+|.|+.|.++++.-..++....++|++|++..+.+... ...+ ..+++|+.|+++
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3445566677777665521122322366777777776665443 2222 356777777764
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=7.7e-08 Score=75.98 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=44.0
Q ss_pred cCCEEEccCCCCcC-----chHhhhCCCCCCEEeCCCCcccccc----cchhccCccCCEEEc--cCCCCcc-----cCC
Q psy11652 210 TLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIEFIQ----NNTFEHLVNLKSISL--SGNKLTR-----IPD 273 (325)
Q Consensus 210 ~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l--~~n~l~~-----l~~ 273 (325)
+|++|++++|.++. +...+...++|++|++++|.++... ...+...++|+.|++ ++|.++. +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 55555555555541 2223444455666666666555321 123344456666666 5566652 222
Q ss_pred -CCCCCCCCEEECCCCcCcc
Q psy11652 274 -FIHNKRLSHLNLGYNFLNE 292 (325)
Q Consensus 274 -~~~~~~L~~L~l~~n~i~~ 292 (325)
+...++|++|++++|.+..
T Consensus 146 ~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHCSSCCEEECCCSSHHH
T ss_pred HHHhCCCcCEEeccCCCCCh
Confidence 4555677777777776653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=9.2e-08 Score=75.53 Aligned_cols=115 Identities=15% Similarity=0.078 Sum_probs=82.2
Q ss_pred hhhccCCCCccEEEccCC-cCcc-----cccCccCCccccEEEcccCCCcccCh----hhhhCccccCCEEEccCCCCcC
Q psy11652 154 NLNLNNTYYIKDLILSYN-QISK-----LNANTFRNLNVFRLYLKFNKISEIHD----FAFNGLNSTLEFLDLENNRLTN 223 (325)
Q Consensus 154 ~~~~~~~~~L~~L~l~~~-~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~~~l~~ 223 (325)
...+...+.|++|++++| .+.. +...+...+.|++|++++|.++.... ..+...+ +|++|++++|.++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCH
Confidence 455777888999999988 7762 33333344789999999998876433 3334445 89999999998873
Q ss_pred -----chHhhhCCCCCCEEeC--CCCcccccc----cchhccCccCCEEEccCCCCc
Q psy11652 224 -----INQCFRNLKKLKYLYL--HNNNIEFIQ----NNTFEHLVNLKSISLSGNKLT 269 (325)
Q Consensus 224 -----~~~~~~~~~~L~~L~l--~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~ 269 (325)
+...+...++|++|++ ++|.++... ...+...++|+.|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3446777788999999 788887532 234455678999999888775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=2.6e-06 Score=65.88 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=54.8
Q ss_pred cCccEEECCCCcccccc--cccCCCCccEEEccCCC-Cccc--ccc------cCCccEEEeecCc-ccch--hhhccCCC
Q psy11652 53 NKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNL-LQTL--DSL------PKTMETLSVANNY-LVNY--LELNRMTS 118 (325)
Q Consensus 53 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~--~~l------~~~L~~L~l~~~~-l~~~--~~~~~~~~ 118 (325)
..|+.|++++|.+++.. .+.+|++|++|++++|. +++. ..+ .++|++|++++|. ++.. ..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 37888888888877655 67788888888888885 5544 333 2468888888874 5554 66677788
Q ss_pred CCEEEccCCc
Q psy11652 119 LKWIVLSNNY 128 (325)
Q Consensus 119 L~~L~l~~~~ 128 (325)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887764
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=9.7e-06 Score=62.68 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=13.4
Q ss_pred cccEEEcccCCCcccChhhhhCccccCCEEEccCC
Q psy11652 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219 (325)
Q Consensus 185 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 219 (325)
+|+.|+++++.++......+.+++ +|+.|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCC
Confidence 344444444444333333333333 4444444443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.90 E-value=4.6e-06 Score=69.36 Aligned_cols=64 Identities=31% Similarity=0.371 Sum_probs=38.0
Q ss_pred hCCCCCCEEeCCCCccccccc--chhccCccCCEEEccCCCCcccCCCCCCC--CCCEEECCCCcCcc
Q psy11652 229 RNLKKLKYLYLHNNNIEFIQN--NTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFLNE 292 (325)
Q Consensus 229 ~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~l~~l~~~~~~~--~L~~L~l~~n~i~~ 292 (325)
..+++|+.|++++|.++++.. ..+..+++|+.|+|++|.+..+..+..+. +|++|++++|++..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 345666666666666665432 33445666777777777666553322222 67777777777654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=3.1e-05 Score=64.36 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=49.9
Q ss_pred CccccCCEEEccCCCCcCch---HhhhCCCCCCEEeCCCCcccccccchhccCc--cCCEEEccCCCCc-ccCC------
Q psy11652 206 GLNSTLEFLDLENNRLTNIN---QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV--NLKSISLSGNKLT-RIPD------ 273 (325)
Q Consensus 206 ~~~~~L~~L~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~--~L~~L~l~~n~l~-~l~~------ 273 (325)
.++ +|+.|++++|.+..++ ..+..+++|+.|++++|.+.++.. +..+. +|+.|++++|.+. .+|.
T Consensus 168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 455 7777888777776543 355677788888888887776522 33333 7788888888776 3431
Q ss_pred --CCCCCCCCEEE
Q psy11652 274 --FIHNKRLSHLN 284 (325)
Q Consensus 274 --~~~~~~L~~L~ 284 (325)
+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 45667777764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=0.00018 Score=56.67 Aligned_cols=106 Identities=10% Similarity=0.084 Sum_probs=59.0
Q ss_pred ccccEEEcccC-CCcccC----hhhhhCccccCCEEEccCCCCc-----CchHhhhCCCCCCEEeCCCCccccccc----
Q psy11652 184 LNVFRLYLKFN-KISEIH----DFAFNGLNSTLEFLDLENNRLT-----NINQCFRNLKKLKYLYLHNNNIEFIQN---- 249 (325)
Q Consensus 184 ~~L~~L~l~~~-~l~~~~----~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~---- 249 (325)
+.|+.|+++++ .++... ...+.... .|+.|++++|.++ .+...+...+.|+.|++++|.++....
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 45555555553 444321 23333444 6677777776665 334455566677777777777664222
Q ss_pred chhccCccCCEEEccCC---CCc-----ccCC-CCCCCCCCEEECCCCcC
Q psy11652 250 NTFEHLVNLKSISLSGN---KLT-----RIPD-FIHNKRLSHLNLGYNFL 290 (325)
Q Consensus 250 ~~l~~~~~L~~L~l~~n---~l~-----~l~~-~~~~~~L~~L~l~~n~i 290 (325)
..+..-+.|+.|+|+++ .+. .+.. +...++|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 12333356777777654 333 1222 55667788888876654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=0.00039 Score=54.73 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=9.5
Q ss_pred ccCCCCccEEEccCCCCccc
Q psy11652 71 LNGFRSILWLNMDSNLLQTL 90 (325)
Q Consensus 71 ~~~~~~L~~L~l~~~~~~~~ 90 (325)
+..-..|+.|++++|.+.+.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ 85 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDS 85 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHH
T ss_pred HhhCCCcCEEEccCCCCChH
Confidence 33444455555555544443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00057 Score=50.11 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=46.1
Q ss_pred ceEEcCCCcee--eecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCCCCc
Q psy11652 30 MSAENEDNQIA--ELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSNLLQ 88 (325)
Q Consensus 30 ~~L~l~~~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 88 (325)
..++++++.++ .+|. .+ ++.|++|+|++|.|+.++ .|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~l----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AF----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CC----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC-CC----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 58899999998 8887 44 468999999999999998 7888899999999988664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.70 E-value=0.0025 Score=46.65 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=15.4
Q ss_pred CCEEeCCCCcccccccchhccCccCCEEEccCCCC
Q psy11652 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268 (325)
Q Consensus 234 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 268 (325)
++.|++++|.++.++...|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444444444444444444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.41 E-value=1.4 Score=30.16 Aligned_cols=46 Identities=9% Similarity=0.181 Sum_probs=26.2
Q ss_pred CceeeecCCCcCcccccCccEEECCCCcccccc--cccCCCCccEEEccCC
Q psy11652 37 NQIAELETANWSPEIQNKLTTLFIGENHIHQIE--NLNGFRSILWLNMDSN 85 (325)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~ 85 (325)
..++.+....| ... ..|+.+.|..+ ++.+. +|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF-~~c-~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLF-AGN-TVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTT-TTC-TTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHh-cCC-CCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34555555555 444 56666666543 44444 6666666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.68 E-value=5.4 Score=27.09 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=17.8
Q ss_pred hhhCCCCCCEEeCCCCcccccccchhccCccCCEEEccC
Q psy11652 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG 265 (325)
Q Consensus 227 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 265 (325)
.|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4445555555555433 3334444444455555444433
Done!