RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11652
(325 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 53.7 bits (130), Expect = 9e-10
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 211 LEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
L+ LDL NNRLT I F+ L LK L L NN+ I F L +L+S+ LSGN L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 44.5 bits (106), Expect = 1e-06
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
LK L L NN + I + F+ L NLK + LSGN LT I F L L+L N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 44.5 bits (106), Expect = 2e-06
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNI 244
L L N+++ I D AF GL + L+ LDL N LT+I+ + F L L+ L L NN+
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPN-LKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 31.7 bits (73), Expect = 0.048
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 139 HIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKI 196
+++ LDLSNN ++ I +K L LS N ++ ++ F L ++ L L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 28.7 bits (65), Expect = 0.58
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 257 NLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
NLKS+ LS N+LT IPD F L L+L N L +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI 39
Score = 26.4 bits (59), Expect = 4.5
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 118 SLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQI 173
+LK + LSNN + + +++ LDLS N +++I+ + ++ L LS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 57.3 bits (138), Expect = 3e-09
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 6/202 (2%)
Query: 104 NNYLVNYLELNRMTSLKWIVLSNNYIKE---FVIPNRKHIEKLDLSNNLISTINLNLNNT 160
N N EL +T+L + L NN I + + + ++++LDLS+N I ++ L N
Sbjct: 103 NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNL 162
Query: 161 YYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
+K+L LS+N +S L N+ L L NKIS++ L S LE LDL NN
Sbjct: 163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNS 220
Query: 221 LTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRL 280
+ + NLK L L L NN +E + + +L NL+++ LS N+++ I L
Sbjct: 221 IIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISSLGSLTNL 279
Query: 281 SHLNLGYNFLNELILESSIVEN 302
L+L N L+ + +++
Sbjct: 280 RELDLSGNSLSNALPLIALLLL 301
Score = 33.0 bits (75), Expect = 0.21
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 64 HIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIV 123
++N N + + + L+ LD +E+L L N L+
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF------ 172
Query: 124 LSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRN 183
++ ++ N ++ LDLS N IS + + +++L LS N I +L ++
Sbjct: 173 -NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNL 231
Query: 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNN 243
N+ L L NK+ ++ + G S LE LDL NN++++I+ +L L+ L L N+
Sbjct: 232 KNLSGLELSNNKLEDLPE--SIGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNS 288
Query: 244 I 244
+
Sbjct: 289 L 289
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 44.1 bits (104), Expect = 8e-05
Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 27/222 (12%)
Query: 96 TMETLSVANNYLVNYL--ELNRMTSLKWIVLS-NNYIKEFVIPNR----KHIEKLDLS-N 147
++E L++A+N LV + EL +M SLKWI L NN E IP + LDL N
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYN 246
Query: 148 NLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS-EIHDFAFN 205
NL I +L N ++ L L N++S + +L + L L N +S EI +
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306
Query: 206 GLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEF-IQNNTFEHLVNLKSISL 263
N LE L L +N T I +L +L+ L L +N I N +H NL + L
Sbjct: 307 LQN--LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDL 363
Query: 264 SGNKLT-RIPDFIHNKRLSHLNLGYNFLNELILESSIVENEI 304
S N LT IP+ + + L +LIL S+ +E EI
Sbjct: 364 STNNLTGEIPEGLCSS---------GNLFKLILFSNSLEGEI 396
Score = 43.3 bits (102), Expect = 1e-04
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 39/214 (18%)
Query: 97 METLSVANNYLVNYLELNRMT---SLKWIVLSNNY----IKEFVIPNRKHIEKLDLSNNL 149
++T++++NN L + + T SL+++ LSNN I IPN +E LDLSNN+
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNM 151
Query: 150 IS-------------------------TINLNLNNTYYIKDLILSYNQ-ISKLNANTFRN 183
+S I +L N ++ L L+ NQ + ++ +
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211
Query: 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-INQCFRNLKKLKYLYLHNN 242
++ +YL +N +S + GL S L LDL N LT I NLK L+YL+L+ N
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270
Query: 243 NIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFI 275
+ + L L S+ LS N L+ IP+ +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304
Score = 32.9 bits (75), Expect = 0.29
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 210 TLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
+L+ L L N+ + F + K+L+ L L N L L + LS NKL
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511
Query: 269 T-RIPDFIHN-KRLSHLNLGYNFLNELILES 297
+ IPD + + K+L L+L +N L+ I S
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542
Score = 31.7 bits (72), Expect = 0.67
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 146 SNNLISTINLNLNNTYYIKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKI-SEIHDFA 203
SN I NL + L LS N ++ ++ + N+F+L L N + EI
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400
Query: 204 FNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSIS 262
G +L + L++N + + F L + +L + NNN++ N+ + +L+ +S
Sbjct: 401 --GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458
Query: 263 LSGNKLT-RIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNM 309
L+ NK +PD +KRL +L+L N + + +E++ +
Sbjct: 459 LARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506
Score = 29.4 bits (66), Expect = 2.9
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 100 LSVANNYLVNYLELNR--MTSLKWIVLS-NNYIKEFVIPNR-KHIEKLDLSNNLIS-TIN 154
L ++NN L + + M SL+ + L+ N + K +E LDLS N S +
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492
Query: 155 LNLNNTYYIKDLILSYNQIS 174
L + + L LS N++S
Sbjct: 493 RKLGSLSELMQLKLSENKLS 512
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 36.4 bits (85), Expect = 0.004
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
+ I D+AF + L + + ++ +T+I F LK + L +++ I + F +
Sbjct: 1 TSIGDYAFYNCS--LTSITIPSS-VTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNC 56
Query: 256 VNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
+L SI++ + LT I + F + L+ + + N
Sbjct: 57 SSLTSITIPSS-LTSIGEYAFSNCSSLTSITIPSN 90
Score = 27.9 bits (63), Expect = 3.4
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTF 252
+ ++ I ++AF+ S+L + + +N LT I F N LK + + +++ I + F
Sbjct: 66 SSLTSIGEYAFSN-CSSLTSITIPSN-LTTIGSYAFSN-CSLKSITI-PSSVTTIGDYAF 121
Query: 253 EHLVNLK 259
+ +LK
Sbjct: 122 SNCSSLK 128
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 38.0 bits (89), Expect = 0.007
Identities = 61/279 (21%), Positives = 94/279 (33%), Gaps = 32/279 (11%)
Query: 65 IHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLS---VANNYLV-NYLELNRM---- 116
I I ++ R+ L LN D Q S S V N L+ ++L +N +
Sbjct: 819 IRGISSIQLVRTCLVLNWD----QDKKSSSIEEARASFVEVRTNGLIRDFLRINLVKSPI 874
Query: 117 ---------TSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
+S +V SNN++ I ++ I+ LS N + L N LI
Sbjct: 875 SYIRKRNDPSSSGLLVQSNNFLDSTNIYSKAEIQSQSLSQNQGTIRTLLNRNKESQSLLI 934
Query: 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDF--AFNGLNSTLEFLDLENNRLTNIN 225
LS +++ FR K++ I E + N L L + N +
Sbjct: 935 LS-------SSDCFRIGPFNGKKSKYHNIKESNPLIPIRNSLGPLGTVLQIANFSSSYHL 987
Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV--NLKSISLSGNKLTRIPDFIHNKRLSHL 283
+ KYL L N F +L+ N K + + F N H
Sbjct: 988 LTHNQILVTKYLQLDNLKQTFQVKVLKYYLIDENGKIYNPDPCSNIILNPFNLNWYFLHH 1047
Query: 284 NLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFS 322
N + L I EN I +N S ++ Q
Sbjct: 1048 NYCEETSTIISLGQFICENVCISKNGPHKSGQIIIVQVD 1086
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 32.8 bits (76), Expect = 0.015
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIH 276
L+ L L NN I + +L NL+++ LSGNK+T + +
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPLSN 43
Score = 32.5 bits (75), Expect = 0.016
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 211 LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQN 249
LE LDL NN++T++ NL L+ L L N I +
Sbjct: 3 LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 30.9 bits (71), Expect = 0.074
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 257 NLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
NL+++ LS N++T +P + L L+L N + +L
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDL 38
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
L TL + N I + L+ ++ L++ N + L L
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 34.3 bits (79), Expect = 0.073
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 211 LEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV-------NL 258
LE L L NRL + + R + LK L L NN I + L NL
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI---GDAGIRALAEGLKANCNL 195
Query: 259 KSISLSGNKLTRIPD------FIHNKRLSHLNLGYNFLNELIL 295
+ + L+ N LT K L LNLG N L +
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238
Score = 33.9 bits (78), Expect = 0.090
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS----EIHDFAFNGL------NSTLEF 213
+ L+L N++ A+ R +++ I D L N LE
Sbjct: 140 EKLVLGRNRLE--GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197
Query: 214 LDLENNRLTNIN-----QCFRNLKKLKYLYLHNNNIEF-----IQNNTFEHLVNLKSISL 263
LDL NN LT+ + +LK L+ L L +NN+ + + ++L ++SL
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257
Query: 264 SGNKLTR 270
S N +T
Sbjct: 258 SCNDITD 264
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 33.1 bits (75), Expect = 0.21
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSGN------KLTRIPDFIHNKRL 280
+ NN I I+ +L NL I LSGN L R+P + K +
Sbjct: 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGV 49
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 28.1 bits (64), Expect = 0.49
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEH 254
L L+ L L NN + + F+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 25.4 bits (57), Expect = 4.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 255 LVNLKSISLSGNKLTRIPD 273
L NL+ + LS N+L+ +P
Sbjct: 1 LPNLRELDLSNNQLSSLPP 19
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 28.1 bits (64), Expect = 0.49
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEH 254
L L+ L L NN + + F+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 25.4 bits (57), Expect = 4.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 255 LVNLKSISLSGNKLTRIPD 273
L NL+ + LS N+L+ +P
Sbjct: 1 LPNLRELDLSNNQLSSLPP 19
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 31.7 bits (72), Expect = 0.50
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 237 LYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFIHN-KRLSHLNLGYNFLNELI 294
L L N + N L +L+SI+LSGN + IP + + L L+L YN N I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 295 LES 297
ES
Sbjct: 483 PES 485
Score = 31.3 bits (71), Expect = 0.72
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 117 TSLKWIV----LSNNYIKEFV---IPNRKHIEKLDLSNNLI-STINLNLNNTYYIKDLIL 168
T KW + L N ++ F+ I +H++ ++LS N I I +L + ++ L L
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL 473
Query: 169 SYNQISKLNANTFRNLNVFR-LYLKFNKIS 197
SYN + + L R L L N +S
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 30.5 bits (68), Expect = 1.4
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 29/136 (21%)
Query: 37 NQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKT 96
NQ+ L P + L L + +N + + L LW +N L +L +LP
Sbjct: 292 NQLTSL------PVLPPGLQELSVSDNQLASLPALPSELCKLWAY--NNQLTSLPTLPSG 343
Query: 97 METLSVANNYLVNYLEL-----------NRMTS-------LKWIVLSNNYIKEF-VIPNR 137
++ LSV++N L + L NR+TS LK +++S N + V+P+
Sbjct: 344 LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSE 403
Query: 138 KHIEKLDLSNNLISTI 153
+++L +S N ++++
Sbjct: 404 --LKELMVSGNRLTSL 417
Score = 29.7 bits (66), Expect = 2.3
Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 35/224 (15%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELN 114
+TTL I +N++ + L + L + N L +L LP + LS+ +N L + L
Sbjct: 224 ITTLVIPDNNLTSLPALP--PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 281
Query: 115 RMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQIS 174
WI N V+P +++L +S+N +++ L +++
Sbjct: 282 SGLCKLWI-FGNQLTSLPVLP--PGLQELSVSDNQLAS-------------LPALPSELC 325
Query: 175 KLNA--NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
KL A N +L L+ +S+ + L S L L NNRLT++ LK
Sbjct: 326 KLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLK 385
Query: 233 KLKYLYLHNNNIEFIQNNTFEHL----VNLKSISLSGNKLTRIP 272
+L + N L LK + +SGN+LT +P
Sbjct: 386 EL-----------IVSGNRLTSLPVLPSELKELMVSGNRLTSLP 418
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 28.2 bits (63), Expect = 6.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 137 RKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYL 191
H+E D+ +++I NL ++ TY + L+ + Q K N N+ N R YL
Sbjct: 418 MNHLENQDVHSSIIYIDNLQISETYCVNQLLSVFFQYDK-NLNSLTNSFDQRSYL 471
>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional.
Length = 452
Score = 28.0 bits (63), Expect = 6.9
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV--NLKSISLSGNKLTRIPDFIH 276
Q +N K L L + + T HLV +L+ ++G+K+ ++ D ++
Sbjct: 307 QVLKNAKALA-AALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVN 358
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 27.9 bits (62), Expect = 8.5
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 11/73 (15%)
Query: 217 ENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIH 276
N I + ++ LK L I N E N ++ L+ NK +
Sbjct: 311 YGNEQDEIKEYDDIIRFLKQLN-----HMEISNPYVELTYNPENYVLNYNKFDKWVK--- 362
Query: 277 NKRLSHLNLGYNF 289
L + Y F
Sbjct: 363 ---LQFIEDMYGF 372
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 28.0 bits (62), Expect = 9.1
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 76 SILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELN-----RMTSLK-WIVLSNNYI 129
S+LW+ + L+Q+L + P+ ++ + N +V+Y + R SLK W+VL +
Sbjct: 316 SLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGV 375
Query: 130 KEFVIPNRKHIE 141
+ R HI+
Sbjct: 376 ENLQSYIRNHIK 387
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,917,101
Number of extensions: 1518895
Number of successful extensions: 1582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 164
Length of query: 325
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 228
Effective length of database: 6,635,264
Effective search space: 1512840192
Effective search space used: 1512840192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)