RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11652
(325 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 134 bits (340), Expect = 3e-36
Identities = 60/278 (21%), Positives = 114/278 (41%), Gaps = 27/278 (9%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL--- 90
N+I L ++ L L + EN + +E N ++ L + SN L+ +
Sbjct: 41 KNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98
Query: 91 --DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIE 141
L + L ++ N + + + +LK + + +N + I +R +E
Sbjct: 99 VFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLE 155
Query: 142 KLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNK-ISE 198
+L L +++I L++ + + L L + I+ + +F+ L + L + +
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257
+ GLN L L + + LT + R+L L++L L N I I+ + L+
Sbjct: 216 MTPNCLYGLN--LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273
Query: 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
L+ I L G +L + F L LN+ N L L
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
Score = 124 bits (312), Expect = 3e-32
Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 139 HIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKI 196
LDL N I T+N + + ++++L L+ N +S + F NL N+ L L+ N++
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
I F GL++ L LD+ N++ + + F++L LK L + +N++ +I + F L
Sbjct: 93 KLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 256 VNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
+L+ ++L LT IP H L L L + +N +
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191
Score = 116 bits (292), Expect = 2e-29
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 7/155 (4%)
Query: 143 LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHD 201
+ + + + L L N+I LN + F + ++ L L N +S +
Sbjct: 16 VLCHRKRFVAVPEGIPTE--TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 202 FAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
AFN L + L L L +NRL I F L L L + N I + + F+ L NLKS
Sbjct: 74 GAFNNLFN-LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132
Query: 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
+ + N L I F L L L L +
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 130 bits (329), Expect = 1e-35
Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 24/256 (9%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDS-LPKTMETLSVANNYLVNY 110
L TL + N I +I + L + N L+ L +PKT++ L V N +
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 136
Query: 111 LE--LNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNLNNTYYI 163
+ N + + + L N +K I N K + + +++ I+TI L + +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS--L 194
Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
+L L N+I+K++A + + L N+ +L L FN IS + + + L L L NN+L
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV 253
Query: 223 NINQCFRNLKKLKYLYLHNNNIEFIQNNTF------EHLVNLKSISLSGNKL--TRIPD- 273
+ + K ++ +YLHNNNI I +N F + +SL N + I
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313
Query: 274 -FIHNKRLSHLNLGYN 288
F + + LG
Sbjct: 314 TFRCVYVRAAVQLGNY 329
Score = 122 bits (308), Expect = 1e-32
Identities = 45/253 (17%), Positives = 102/253 (40%), Gaps = 30/253 (11%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
++ L + N I +I++ +++ L + +N + + P
Sbjct: 48 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGA---------- 95
Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKD 165
+ L+ + LS N +KE K +++L + N I+ + + N +
Sbjct: 96 ------FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 166 LILSYNQI--SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
+ L N + S + F+ + + + + I+ I +L L L+ N++T
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKIT 205
Query: 223 NIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRL 280
++ + L L L L N+I + N + + +L+ + L+ NKL ++P +K +
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265
Query: 281 SHLNLGYNFLNEL 293
+ L N ++ +
Sbjct: 266 QVVYLHNNNISAI 278
Score = 83.9 bits (208), Expect = 2e-18
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNN 243
+ L L+ NKI+EI D F L + L L L NN+++ I F L KL+ LYL N
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
++ + + L+ + + N++T++ F ++ + LG N L +E+
Sbjct: 112 LKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 132 bits (335), Expect = 1e-35
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 16/215 (7%)
Query: 91 DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKL 143
+P L++ N + + + L+ + L N I++ I + L
Sbjct: 71 QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTL 128
Query: 144 DLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYL-KFNKISEIH 200
+L +N ++ I +++L L N I + + F + ++ RL L + K+ I
Sbjct: 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
+ AF GL + L++L+L + ++ L L+ L + N+ I+ +F L +LK
Sbjct: 189 EGAFEGLFN-LKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246
Query: 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
+ + ++++ I F L LNL +N L+ L
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Score = 122 bits (308), Expect = 7e-32
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 36/253 (14%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
I + L + EN+I I+ + L + N ++ ++
Sbjct: 71 QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--VGA---------- 118
Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLN-LNNT 160
N + SL + L +N++ IP+ + +L L NN I +I N
Sbjct: 119 ------FNGLASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 161 YYIKDLILS-YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
+ L L ++ ++ F L N+ L L I ++ + L LE L++
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT--PLVG-LEELEMSG 227
Query: 219 NRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FI 275
N I F L LK L++ N+ + I+ N F+ L +L ++L+ N L+ +P F
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287
Query: 276 HNKRLSHLNLGYN 288
+ L L+L +N
Sbjct: 288 PLRYLVELHLHHN 300
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 128 bits (323), Expect = 1e-34
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 23/255 (9%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDS-LPKTMETLSVANNYL--V 108
L L + N I +I + R + L + N L + LP ++ L + +N + V
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKV 138
Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRK----HIEKLDLSNNLISTINLNLNNTYYIK 164
+ + ++ I + N ++ + L +S ++ I +L T +
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET--LN 196
Query: 165 DLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN 223
+L L +N+I + ++RL L N+I I + + + L + L L L+NN+L+
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-LRELHLDNNKLSR 255
Query: 224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL------VNLKSISLSGNKLT--RIPD-- 273
+ +LK L+ +YLH NNI + N F + ISL N + +
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315
Query: 274 FIHNKRLSHLNLGYN 288
F + G
Sbjct: 316 FRCVTDRLAIQFGNY 330
Score = 122 bits (308), Expect = 1e-32
Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 29/246 (11%)
Query: 55 LTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
T L + N I ++ G + + L + +N + + K
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--EKA---------------- 97
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN 171
+ + L+ + +S N++ E + +L + +N I + + + + + N
Sbjct: 98 FSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157
Query: 172 QI--SKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CF 228
+ S F L + L + K++ I TL L L++N++ I
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDL 213
Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGY 287
KL L L +N I I+N + L L+ + L NKL+R+P K L + L
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273
Query: 288 NFLNEL 293
N + ++
Sbjct: 274 NNITKV 279
Score = 93.2 bits (232), Expect = 7e-22
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 138 KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNK 195
LDL NN IS + + ++ L+L N+ISK++ F L + +LY+ N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIE--FIQNNTF 252
+ EI S+L L + +NR+ + + F L+ + + + N +E + F
Sbjct: 114 LVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 253 EHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ L L + +S KLT IP + + L+ L+L +N + +
Sbjct: 170 DGL-KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAI 208
Score = 83.9 bits (208), Expect = 1e-18
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNN 243
+ L L+ N ISE+ F GL L L L NN+++ I + F L+KL+ LY+ N+
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
+ I N LV L + N++ ++P F + ++ + +G N L E
Sbjct: 114 LVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 130 bits (328), Expect = 1e-34
Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 16/215 (7%)
Query: 91 DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKL 143
D + L++ N + + + L+ + LS N+I+ I ++ L
Sbjct: 60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTL 117
Query: 144 DLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYL-KFNKISEIH 200
+L +N ++TI +K+L L N I + + F + ++ RL L + ++S I
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177
Query: 201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
+ AF GL++ L +L+L L I L KL L L N++ I+ +F+ L++L+
Sbjct: 178 EGAFEGLSN-LRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
+ + +++ I F + + L +NL +N L L
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Score = 122 bits (309), Expect = 5e-32
Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 36/253 (14%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
I L + EN I I+ R + L + N ++T++
Sbjct: 60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE--IGA---------- 107
Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNL-NNT 160
N + +L + L +N + IPN +++L L NN I +I N
Sbjct: 108 ------FNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159
Query: 161 YYIKDLILS-YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
++ L L ++S ++ F L N+ L L + EI + L L+ LDL
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT--PL-IKLDELDLSG 216
Query: 219 NRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FI 275
N L+ I F+ L L+ L++ + I+ I+ N F++L +L I+L+ N LT +P F
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276
Query: 276 HNKRLSHLNLGYN 288
L ++L +N
Sbjct: 277 PLHHLERIHLHHN 289
Score = 27.8 bits (62), Expect = 5.5
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 257 NLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ L +PD I + LNL N + +
Sbjct: 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQII 79
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 120 bits (303), Expect = 2e-32
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 117 TSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSY 170
+ + I L N I +P +++ L L +N+++ I+ ++ L LS
Sbjct: 32 AASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 171 N-QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQC 227
N Q+ ++ TF L + L+L + E+ F GL + L++L L++N L + +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNALQALPDDT 148
Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNL 285
FR+L L +L+LH N I + F L +L + L N++ + F RL L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 286 GYNFLNEL 293
N L+ L
Sbjct: 209 FANNLSAL 216
Score = 120 bits (302), Expect = 4e-32
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 91 DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKL 143
+P + + + N + V +L + L +N + I +E+L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--IDAAAFTGLALLEQL 85
Query: 144 DLSNNL-ISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
DLS+N + +++ + + L L + +L FR L + LYL+ N + +
Sbjct: 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 201 DFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
D F L + L L L NR++++ + FR L L L LH N + + + F L L
Sbjct: 146 DDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 260 SISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
++ L N L+ +P + L +L L N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 101 bits (255), Expect = 2e-25
Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 46/236 (19%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSL 93
N+I+ + A++ LT L++ N + +I+ G + L++ N L S+
Sbjct: 41 GNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ--LRSV 96
Query: 94 PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI 153
+ + L L L + +
Sbjct: 97 DPAT---------------FHGLGRLHT---------------------LHLDRCGLQEL 120
Query: 154 NLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTL 211
++ L L N + L +TFR+L N+ L+L N+IS + + AF GL+S L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-L 179
Query: 212 EFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
+ L L NR+ ++ FR+L +L LYL NN+ + L L+ + L+ N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 118 bits (297), Expect = 3e-30
Identities = 65/259 (25%), Positives = 103/259 (39%), Gaps = 30/259 (11%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
+ L + N + I LN L T++ ++
Sbjct: 154 RRFHVLDLTFNKVKSICEE------DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207
Query: 113 LNRMTSLKWIVLSNNYIKE------FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKD- 165
+ TS+ + LS N KE F I+ L LSN+ + N +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 166 ------------LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLE 212
LS ++I L + F + ++ +L L N+I++I D AF GL L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH-LL 326
Query: 213 FLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
L+L N L +I ++ F NL KL+ L L N+I + + +F L NLK ++L N+L +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Query: 272 PD--FIHNKRLSHLNLGYN 288
PD F L + L N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405
Score = 95.6 bits (238), Expect = 3e-22
Identities = 62/304 (20%), Positives = 106/304 (34%), Gaps = 48/304 (15%)
Query: 35 EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFR---SILWLNMDSNLLQTL- 90
N IAEL ++S L L + + + N FR S++ L +D N L
Sbjct: 38 SLNSIAELNETSFSR--LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95
Query: 91 ----DSLPKTMETLSVANNYLVNYL----ELNRMTSLKWIVLSNNYIKEF----VIPNRK 138
+ L +E L++ L + +TSL+ +VL +N IK+ N +
Sbjct: 96 TGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154
Query: 139 HIEKLDLSNNLISTI-----------NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF 187
LDL+ N + +I + L I ++ +
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214
Query: 188 R-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK-------------- 232
L L N E F + + L + N+ F +
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274
Query: 233 -KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNF 289
+K L + I + + F H +L+ ++L+ N++ +I D F L LNL NF
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 290 LNEL 293
L +
Sbjct: 335 LGSI 338
Score = 95.6 bits (238), Expect = 4e-22
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 139 HIEKLDLSNNLISTIN-LNLNNTYYIKDLILSYNQIS-KLNANTFRNL-NVFRLYLKFNK 195
H+ +DLS N I+ +N + + ++ L + + NTFR L ++ L L +N+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNI---NQCFRNLKKLKYLYLHNNNIEFIQNNT- 251
++ AFNGL + LE L L L F+ L L+ L L +NNI+ IQ +
Sbjct: 91 FLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 252 FEHLVNLKSISLSGNKLTRIP----DFIHNKRLSHLNLGYNFLNEL 293
F ++ + L+ NK+ I K + L L L ++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195
Score = 84.0 bits (208), Expect = 3e-18
Identities = 50/293 (17%), Positives = 102/293 (34%), Gaps = 52/293 (17%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQT------LDSLPKTMETL 100
PE+ + + + N I ++ + + + +L ++ L + L
Sbjct: 26 PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS-LIIL 84
Query: 101 SVANNYLVNYLE--LNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTI 153
+ N + N + +L+ + L+ + V+ +E L L +N I I
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
Query: 154 NL-----NLNNTYYIKDLILSYNQISKLNANTFRNL---NVFRLYLKFNKISEIHDFAFN 205
N+ L L++N++ + N + L L + +++++
Sbjct: 145 QPASFFLNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 206 GL-------NSTLEFLDLENNRLTNINQ----CFRNLKKLKYLYLHN----------NNI 244
N+++ LDL N K++ L L N N
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 245 EFIQNNTFEHLV--NLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
+ N TF+ L +K+ LS +K+ + F H L L L N +N++
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Score = 75.9 bits (187), Expect = 1e-15
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 8/196 (4%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
+TTL + N + F + +L+ + + + + +
Sbjct: 213 SITTLDLSGNGFKESMA-KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 114 NRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILS 169
+ +K LS + I V + +E+L L+ N I+ I+ N ++ L LS
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 170 YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQC 227
N + +++ F NL + L L +N I + D +F GL + L+ L L+ N+L ++ +
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN-LKELALDTNQLKSVPDGI 390
Query: 228 FRNLKKLKYLYLHNNN 243
F L L+ ++LH N
Sbjct: 391 FDRLTSLQKIWLHTNP 406
Score = 28.2 bits (63), Expect = 3.7
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 256 VNLKSISLSGNKLTRIP--DFIHNKRLSHLNLGYNFLNELI 294
++ + LS N + + F + L L + +I
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 115 bits (290), Expect = 3e-30
Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 14/216 (6%)
Query: 91 DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKL 143
+P + L + +N L + + +++T L + LS+N + ++ ++ L
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83
Query: 144 DLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-NTFRNL-NVFRLYLKFNKISEIHD 201
DLS N + T++ N ++ L ++ + +++ + F +L N+ L + +
Sbjct: 84 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143
Query: 202 FAFNGLNSTLEFLDLENNRLTN--INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
FNGL+S LE L + N + F L+ L +L L +E + F L +L+
Sbjct: 144 GIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 260 SISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
+++S N + + L L+ N +
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Score = 108 bits (272), Expect = 1e-27
Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 39/251 (15%)
Query: 55 LTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
T L + N + + + + + L++ SN L ++
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT------------ 77
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTIN-----LNLNNTYYI 163
TSLK++ LS N + + + + +E LD ++ + ++ L+L N +
Sbjct: 78 ----TSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN---L 128
Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNK-ISEIHDFAFNGLNSTLEFLDLENNRL 221
L +S+ F L ++ L + N F L + L FLDL +L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQCQL 187
Query: 222 TNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIH-N 277
+ F +L L+ L + +NN + ++ L +L+ + S N + H
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
Query: 278 KRLSHLNLGYN 288
L+ LNL N
Sbjct: 248 SSLAFLNLTQN 258
Score = 87.8 bits (218), Expect = 5e-20
Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 25/212 (11%)
Query: 54 KLTTLFIGENHIHQIE----NLNGFRSILWLNMDSNLLQTLDS----LPKTMETLSVANN 105
+LT L + N + + G S+ +L++ N + T+ S L + +E L ++
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHS 111
Query: 106 YLVNYLELN---RMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLS-NNLISTINLN 156
L E + + +L ++ +S+ + + V N +E L ++ N+ +
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 157 -LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214
+ L LS Q+ +L+ F +L ++ L + N + F + LNS L+ L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS-LQVL 228
Query: 215 DLENNRLTNINQ-CFRNL-KKLKYLYLHNNNI 244
D N + + ++ L +L L N+
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 81.2 bits (201), Expect = 8e-18
Identities = 37/201 (18%), Positives = 80/201 (39%), Gaps = 16/201 (7%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTL---- 90
N ++ + S L L + N + + N G + L+ + L+ +
Sbjct: 61 SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120
Query: 91 --DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEK 142
SL + L +++ + N ++SL+ + ++ N +E +P+ +++
Sbjct: 121 VFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 143 LDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
LDLS + ++ N+ ++ L +S+N L+ ++ L ++ L N I
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 201 DFAFNGLNSTLEFLDLENNRL 221
S+L FL+L N
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260
Score = 30.8 bits (70), Expect = 0.60
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 24/86 (27%)
Query: 212 EFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
+ + LT++ L L +N ++ + + F+ L L
Sbjct: 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLT------------ 55
Query: 272 PDFIHNKRLSHLNLGYNFLNELILES 297
L+L N L+ S
Sbjct: 56 ----------KLSLSSNGLSFKGCCS 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 117 bits (295), Expect = 1e-29
Identities = 50/248 (20%), Positives = 106/248 (42%), Gaps = 13/248 (5%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL-PKTMETLSVANNYLVNYL 111
+++ + I ++++ + L + + +L K+++ L+ +N N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNLNNTYYIKDL 166
+ SL+++ LS N + ++ ++ LDLS N + T++ N ++ L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401
Query: 167 ILSYNQISKL-NANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
++ + ++ + F +L N+ L + + FNGL+S LE L + N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQEN 460
Query: 225 --NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRL 280
F L+ L +L L +E + F L +L+ ++++ N+L +PD F L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 281 SHLNLGYN 288
+ L N
Sbjct: 521 QKIWLHTN 528
Score = 97.9 bits (244), Expect = 9e-23
Identities = 48/262 (18%), Positives = 104/262 (39%), Gaps = 22/262 (8%)
Query: 50 EIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP----------KTMET 99
E+ + F E ++ + + + + L ++ L LD + +
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 100 LSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNN 159
S+ + + + + + + L N +F K +++L ++N ++
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346
Query: 160 TYYIKDLILSYNQISK--LNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
++ L LS N +S + + ++ L L FN + + F GL LE LD
Sbjct: 347 PS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQ-LEHLDF 403
Query: 217 ENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD- 273
+++ L +++ F +L+ L YL + + + N F L +L+ + ++GN
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 274 --FIHNKRLSHLNLGYNFLNEL 293
F + L+ L+L L +L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQL 485
Score = 95.9 bits (239), Expect = 4e-22
Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 29/268 (10%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSL----PKTMETLSVANNYL 107
+L L + I IE+ + L + N +Q+L +++ L L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 108 --VNYLELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTINLNL---- 157
+ + + +LK + +++N I+ F +P ++E LDLS+N I +I
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 158 -NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLNSTLEFLD 215
L LS N ++ + F+ + + +L L+ N S + GL LE
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG-LEVHR 231
Query: 216 LENNRLTNINQ-------CFRNLKKLKYLYLHNNNIEFIQNN---TFEHLVNLKSISLSG 265
L N L L +++ ++ F L N+ S SL
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 266 NKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ R+ DF +N HL L +
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQF 319
Score = 95.6 bits (238), Expect = 5e-22
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 8/155 (5%)
Query: 144 DLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDF 202
I NL + K+L LS+N + L + +F + + L L +I I D
Sbjct: 13 QCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 203 AFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSI 261
A+ L+ L L L N + ++ F L L+ L N+ ++N HL LK +
Sbjct: 71 AYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 262 SLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNEL 293
+++ N + F + L HL+L N + +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 81.7 bits (202), Expect = 2e-17
Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 13/230 (5%)
Query: 82 MDSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPN 136
M+ N + D+LP + + L ++ N L + L+ + LS I+ +
Sbjct: 15 MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFN 194
H+ L L+ N I ++ L + ++ L+ ++ L +L + L + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 195 KISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKY----LYLHNNNIEFIQN 249
I + + LE LDL +N++ +I R L ++ L L N + FIQ
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSI 299
F+ + L ++L N + + L+ L + L E E ++
Sbjct: 195 GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Score = 81.7 bits (202), Expect = 2e-17
Identities = 59/291 (20%), Positives = 106/291 (36%), Gaps = 46/291 (15%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
L+TL + N I + +G S+ L L +L++ P KT++ L+VA+N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 108 VNY---LELNRMTSLKWIVLSNNYIKEFVIPN-------RKHIEKLDLSNNLISTINLNL 157
++ + +T+L+ + LS+N I+ + LDLS N ++ I
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 158 NNTYYIKDLILSYNQIS-KLNANTFRNL-------NVFRLYLKFNKISEIHDFAFNGL-N 208
+ L L N S + + L V + + + A GL N
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 209 STLEFLDLENNRL--TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH------------ 254
T+E L +I F L + L + IE +++ ++
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 255 -------LVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESS 298
L +LK ++ + NK + L L+L N L+ S
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Score = 79.4 bits (196), Expect = 1e-16
Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 18/247 (7%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVN-YLE 112
+L L + N + + L + +L + + A L N +E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
R+ L + + + ++ L + I + + + + + L L +
Sbjct: 261 EFRLAYLDYYLDDIID----LFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCK 315
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC---FR 229
+ ++L RL NK +LEFLDL N L+ C
Sbjct: 316 FGQFPTLKLKSLK--RLTFTSNKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD---FIHNKRLSHLNLG 286
LKYL L N + + +N F L L+ + + L ++ + F+ + L +L++
Sbjct: 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 287 YNFLNEL 293
+
Sbjct: 430 HTHTRVA 436
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 117 bits (295), Expect = 1e-29
Identities = 47/253 (18%), Positives = 99/253 (39%), Gaps = 13/253 (5%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP-KTMETLSVANNYLVNYLE 112
++ + + I +E++ L++ L+ +L +++L++ N +
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK 345
Query: 113 LNRMTSLKWIVLSNNYIKE-----FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
+ SL ++ LS N + + + LDLS N ++ N ++ L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
Query: 168 LSYNQISKL-NANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI- 224
++ + ++ + F +L + L + + D F GL S L L + N +
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNT 464
Query: 225 -NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLS 281
+ F N L +L L +E I F+ L L+ +++S N L + + LS
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524
Query: 282 HLNLGYNFLNELI 294
L+ +N +
Sbjct: 525 TLDCSFNRIETSK 537
Score = 103 bits (259), Expect = 1e-24
Identities = 47/261 (18%), Positives = 94/261 (36%), Gaps = 19/261 (7%)
Query: 50 EIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKT------METLS 101
+ + F E ++ E + G + + +S
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Query: 102 VANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTY 161
+A + ++ + + + + +K+F + ++ L L+ N S
Sbjct: 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS-FKKVALP 350
Query: 162 YIKDLILSYNQISKLNANTFRNLNVFR---LYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
+ L LS N +S ++ +L L L FN I F GL L+ LD ++
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE-LQHLDFQH 408
Query: 219 NRLTNIN--QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--- 273
+ L + F +L+KL YL + N + + F L +L ++ ++GN
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 274 FIHNKRLSHLNLGYNFLNELI 294
F + L+ L+L L ++
Sbjct: 469 FANTTNLTFLDLSKCQLEQIS 489
Score = 101 bits (253), Expect = 6e-24
Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 28/267 (10%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
+L L + I IE+ +G + L + N +Q+ ++E L L
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 108 --VNYLELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLISTINLNL---- 157
+ + ++ +LK + +++N+I +P N ++ +DLS N I TI +N
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176
Query: 158 -NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLNSTLEFLD 215
N L +S N I + F+ + + L L+ N S I L L
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG-LHVHR 235
Query: 216 LENNRLTNINQ-------CFRNLKKLKY--LYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
L + L + L N F L N+ ++SL+G
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295
Query: 267 KLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ + D + + L++ L +
Sbjct: 296 SIKYLEDVPKHFKWQSLSIIRCQLKQF 322
Score = 100 bits (252), Expect = 7e-24
Identities = 34/160 (21%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 143 LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHD 201
+ +S + ++ ++ K++ LS+N + L + +F N + L L +I I D
Sbjct: 16 YQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73
Query: 202 FAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
A++GL+ L L L N + + + F L L+ L + +++ L+ LK
Sbjct: 74 KAWHGLHH-LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 261 ISLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNELILES 297
++++ N + F + L H++L YN++ + +
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Score = 90.5 bits (225), Expect = 2e-20
Identities = 62/289 (21%), Positives = 108/289 (37%), Gaps = 45/289 (15%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
L+ L + N I +G S+ L L +L+S P T++ L+VA+N++
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 108 VNYLE---LNRMTSLKWIVLSNNYIKE-------FVIPNRKHIEKLDLSNNLISTINLNL 157
+ + +T+L + LS NYI+ F+ N + LD+S N I I
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200
Query: 158 NNTYYIKDLILSYNQIS----KLNANTFRNLNVFRL----YLKFNKISEIHDFAFNGL-N 208
+ +L L N S K L+V RL + + GL +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 209 STLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEF-------------------IQ 248
T++ L + + F L + + L +I++ ++
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320
Query: 249 NNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILES 297
L LKS++L+ NK + + LS+L+L N L+ S
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369
Score = 86.6 bits (215), Expect = 5e-19
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQ 226
++SK+ + + + L FN + + ++F+ S L++LDL + I ++
Sbjct: 18 CMDQKLSKVPDDIPSSTK--NIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDK 74
Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLN 284
+ L L L L N I+ +F L +L+++ KL + L LN
Sbjct: 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134
Query: 285 LGYNFLNELILESSI 299
+ +NF++ L +
Sbjct: 135 VAHNFIHSCKLPAYF 149
Score = 80.8 bits (200), Expect = 5e-17
Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 18/208 (8%)
Query: 54 KLTTLFIGENHIHQIENLN----GFRSILWLNMDSNLLQTLDSLPKTM---ETLSVANNY 106
L+ L + N + + G S+ L++ N + + + + L ++
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410
Query: 107 LVNYLE---LNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN--LN 158
L E + L ++ +S K + + L ++ N L+
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470
Query: 159 NTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLE 217
NT + L LS Q+ +++ F L + L + N + + +N L S L LD
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS-LSTLDCS 529
Query: 218 NNRLTNI-NQCFRNLKKLKYLYLHNNNI 244
NR+ K L + L NN++
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSV 557
Score = 80.5 bits (199), Expect = 6e-17
Identities = 46/230 (20%), Positives = 97/230 (42%), Gaps = 13/230 (5%)
Query: 82 MDSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFVIPN 136
MD L + D +P + + + ++ N L + + + L+W+ LS I+ +
Sbjct: 19 MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFN 194
H+ L L+ N I + + + +++L+ +++ L + L + +L + N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 195 KISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLK----YLYLHNNNIEFIQN 249
I A+ + L +DL N + I + L++ L + N I+FIQ+
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198
Query: 250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSI 299
F+ + L ++L GN + + L+ L++ L E E ++
Sbjct: 199 QAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 115 bits (289), Expect = 1e-28
Identities = 58/290 (20%), Positives = 123/290 (42%), Gaps = 21/290 (7%)
Query: 29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNL 86
L ED ++ A + + + ++ + +++ I + + F + L++ +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289
Query: 87 LQTLDSLPKTM---ETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR---- 137
L L S + + L ++ N + + + SL + + N + +
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 138 KHIEKLDLSNNLISTINLN---LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKF 193
+++ +LDLS++ I T + L N +++ L LSYN+ L F+ + L L F
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFI---QN 249
++ + L+ L+L ++ L + Q F L L++L L N+ +
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 250 NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
N+ + L L+ + LS L+ I F K ++H++L +N L +E+
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Score = 107 bits (269), Expect = 5e-26
Identities = 49/289 (16%), Positives = 102/289 (35%), Gaps = 46/289 (15%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
+L TL + N + + L+G +++ L + ++D +P KT+E+L + +N++
Sbjct: 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Query: 108 --VNYLELNRMTSLKWIVLSNNYIKE-----FVIPNRKHIEKLDLSNNLISTI------- 153
+ + LK + NN I + L+L+ N I+ I
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Query: 154 -------------------NLNLNNTYYIKDLILSYNQISKLNANTF---RNLNVFRLYL 191
L + + ++ F ++V + L
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261
Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNT 251
+ + I F+ + L+ LDL L+ + L LK L L N E + +
Sbjct: 262 QKHYFFNISSNTFHCFSG-LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 252 FEHLVNLKSISLSGNKL-TRIPD--FIHNKRLSHLNLGYNFLNELILES 297
+ +L +S+ GN + + + L L+L ++ + +
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Score = 107 bits (268), Expect = 7e-26
Identities = 53/269 (19%), Positives = 108/269 (40%), Gaps = 24/269 (8%)
Query: 54 KLTTLFIGENHIHQI--ENLNGFRS--ILWLNMDSNLLQTLDSLP---KTMETLSVANNY 106
KL L N IH + E+++ + L LN++ N + ++ ++L+
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 107 L----VNYLELNRMTSLKWIVLSNNYIKE-----FVIPNRKHIEKLDLSNNLISTINLN- 156
L+ + + SL + ++ F +E ++L + I+ N
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273
Query: 157 LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
+ +++L L+ +S+L + + +L L NK + + + S L L +
Sbjct: 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSI 332
Query: 217 ENNRL--TNINQCFRNLKKLKYLYLHNNNIEFIQ--NNTFEHLVNLKSISLSGNKLTRIP 272
+ N C NL+ L+ L L +++IE N +L +L+S++LS N+ +
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 273 D--FIHNKRLSHLNLGYNFLNELILESSI 299
F +L L+L + L +S
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Score = 102 bits (256), Expect = 2e-24
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEI 199
+ + N ++ I L N+ + L S+N + + TF L N+ L L +I I
Sbjct: 15 KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 200 HDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
H+ F + L+ L L N L + + K LK+L+ I I + L
Sbjct: 73 HEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 259 KSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
+S+ L N ++ I ++L L+ N ++ L E
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Score = 101 bits (253), Expect = 5e-24
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 139 HIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKI 196
E L+ S N++ TI N + + L L+ QI ++ +TF++ + L L N +
Sbjct: 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
+ + A +G + L+ L +++I N K L+ LYL +N+I I+
Sbjct: 94 IFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 256 VNLKSISLSGNKLTRIP----DFIHNKRLSHLNLGYNFLNEL 293
LK + N + + + LNL N + +
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194
Score = 101 bits (253), Expect = 6e-24
Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 10/190 (5%)
Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQ 172
S + + S N + ++ LDL+ I I+ + + + + L+L+ N
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92
Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRN 230
+ + + L+ IS I + + LE L L +N +++I
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT-LESLYLGSNHISSIKLPKGFP 151
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL--SGNKLTRIPDFI-HNKRLSHLNLGY 287
+KLK L NN I ++ L ++SL +GN + I + LN G
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 288 NFLNELILES 297
+I +
Sbjct: 212 TQNLLVIFKG 221
Score = 99.7 bits (249), Expect = 2e-23
Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 22/266 (8%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD-----SLPKTMETLS 101
+ N L N + I+N + ++ +L++ + + S + ++TL
Sbjct: 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR-LDTLV 87
Query: 102 VANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLN 156
+ N L + L+ +LK + I + N+K +E L L +N IS+I L
Sbjct: 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147
Query: 157 -LNNTYYIKDLILSYNQISKLNANTF---RNLNVFRLYLKFNKISEIHDFAFNGLNSTLE 212
T +K L N I L+ + L L N I+ I AF+
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207
Query: 213 FLDLENNRLTNINQC-FRNLKKLKYLYLHNNNIEFIQNNTFEHL--VNLKSISLSGNKLT 269
N L ++ L + + E I FE L ++++SI+L +
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 270 RIPD--FIHNKRLSHLNLGYNFLNEL 293
I F L L+L L+EL
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSEL 293
Score = 87.4 bits (217), Expect = 3e-19
Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 49/262 (18%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQT------LDSLPKTMETLSVANN 105
L L + N + + F S+ L++ N + L++L + L ++++
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN-LRELDLSHD 360
Query: 106 YL----VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-- 156
+ L+L ++ L+ + LS N +E LDL+ + +
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Query: 157 LNNTYYIKDLILSYNQISKLNANTFRNL----------------------------NVFR 188
N + +K L LS++ + + F L +
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFI 247
L L F +S I AF L + +DL +NRLT+ + + +LK + YL L +N+I I
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538
Query: 248 QNNTFEHLVNLKSISLSGNKLT 269
+ L ++I+L N L
Sbjct: 539 LPSLLPILSQQRTINLRQNPLD 560
Score = 85.8 bits (213), Expect = 8e-19
Identities = 40/251 (15%), Positives = 96/251 (38%), Gaps = 22/251 (8%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSL 93
+ I + N + L +L + N ++ + L++ L+ D+
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418
Query: 94 -----PKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF------VIPNRKHI 140
++ L+++++ L + + + +L+ + L N+ + + +
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478
Query: 141 EKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI 199
E L LS +S+I+ + + + + LS+N+++ + +L L L N IS I
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISII 538
Query: 200 HDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL-KYLYLHNNNIEFIQNNTFEHLVNL 258
L+ ++L N L C + ++ + +E ++ E+ L
Sbjct: 539 LPSLLPILSQ-QRTINLRQNPLD----CTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL 593
Query: 259 KSISLSGNKLT 269
+ + LS L+
Sbjct: 594 RGVRLSDVTLS 604
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 114 bits (288), Expect = 1e-28
Identities = 71/289 (24%), Positives = 118/289 (40%), Gaps = 17/289 (5%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLN----GFRSILWLNMDSNLLQTLD 91
NQI L + S N L ++ N I + +++ + ++ +N L +
Sbjct: 132 KNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 92 SLPKTMETLSVANNYL-VNYLELNRMTSLKWIVLSNN--YIKEFVIPNRKHIEKLDLSNN 148
S+ N L + + N T SN + F + HI +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250
Query: 149 LISTINLNL---NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAF 204
I + N ++ L LS+ + LN+ F L ++ L L +NKI++I D AF
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 205 NGLNSTLEFLDLENNRLTNINQC-FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
GL++ L+ L+L N L + F L K+ Y+ L N+I IQ+ TF+ L L+++ L
Sbjct: 311 YGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 264 SGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFN 312
N LT I + + L N L L + + +N L N
Sbjct: 370 RDNALTTIHFI---PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415
Score = 109 bits (275), Expect = 8e-27
Identities = 59/289 (20%), Positives = 112/289 (38%), Gaps = 32/289 (11%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIE---NLNGFRSILWLNMDSNLLQTLDS 92
+++ + LT L + +N I + + S+ ++ SN + +
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165
Query: 93 L------PKTMETLSVANNYLVNYLELN--------RMTSLKWIVLSNNYIKEFVIPNRK 138
KT+ S+A N L + + ++ R L+ + +S N + N
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN-- 223
Query: 139 HIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL---NVFRLYLKFNK 195
SN + + +L ++I ++ I + NTF L +V L L
Sbjct: 224 ------FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277
Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEH 254
+ ++ F L L+ L+L N++ I ++ F L L+ L L N + + ++ F
Sbjct: 278 VFSLNSRVFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336
Query: 255 LVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVE 301
L + I L N + I D F ++L L+L N L + SI +
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Score = 106 bits (266), Expect = 1e-25
Identities = 57/304 (18%), Positives = 111/304 (36%), Gaps = 43/304 (14%)
Query: 29 LMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNL 86
+M A + I + + ++ ++ + L + + + + + + LN+ N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301
Query: 87 LQTLD----SLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYIKEF---VIPNR 137
+ + ++ L+++ N L + + +I L N+I
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 138 KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF---------- 187
+ ++ LDL +N ++TI+ + I D+ LS N++ L +
Sbjct: 362 EKLQTLDLRDNALTTIHFIPS----IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417
Query: 188 ------------RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC------FR 229
L L N+ S N +LE L L N L + F
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
L L+ LYL++N + + F HL L+ +SL+ N+LT + L L++ N
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQ 537
Query: 290 LNEL 293
L
Sbjct: 538 LLAP 541
Score = 95.6 bits (238), Expect = 5e-22
Identities = 53/276 (19%), Positives = 96/276 (34%), Gaps = 50/276 (18%)
Query: 51 IQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNY 110
+T F Q +L I+ + ++ D N
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ----------------NT 259
Query: 111 LELNRMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDL 166
+S++ + LS+ ++ V K ++ L+L+ N I+ I ++ L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 167 ILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
LSYN + +L ++ F L V + L+ N I+ I D F L L+ LDL +N LT I+
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALTTIH 378
Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNT---------------------FEHLVNLKSISLS 264
+ + ++L N + + + +L+ + L+
Sbjct: 379 ----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434
Query: 265 GNKLTRIPD---FIHNKRLSHLNLGYNFLNELILES 297
N+ + N L L LG N L
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470
Score = 95.6 bits (238), Expect = 6e-22
Identities = 53/287 (18%), Positives = 99/287 (34%), Gaps = 43/287 (14%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQ------TLDSLPKTMETL 100
P++ N L + N+I + + L + S +LP + L
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN-LRIL 78
Query: 101 SVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTI 153
+ ++ + ++ + L + L + + V+ + K + +LDLS N I ++
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 154 NLN--LNNTYYIKDLILSYNQISKLNANTFRNL---NVFRLYLKFNKISEIHDFAFNGL- 207
L+ +K + S NQI + + L + L N + +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 208 ----NSTLEFLDLENNRLTNI-------------NQCFRNLKKLKYLYLHNNNIEFIQNN 250
N LE LD+ N T + +NI+ N
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 251 TFEHLV--NLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
TF L +++ + LS + + F K L LNL YN +N++
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305
Score = 93.3 bits (232), Expect = 3e-21
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 116 MTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIS-TINLN-LNNTYYIKDLILSY 170
+ + + ++LS NYI+ P + ++ L+L + TI+ N ++ L L
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISE--IHDFAFNGLNSTLEFLDLENNRLTNI--N 225
++I L+ + F+ L ++F L L F +S+ + D F L + L LDL N++ ++ +
Sbjct: 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA-LTRLDLSKNQIRSLYLH 141
Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHL--VNLKSISLSGNKLTRIPDF--------I 275
F L LK + +N I + + E L L SL+ N L
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 276 HNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFS 322
N L L++ N I + L ++ +M F
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248
Score = 90.2 bits (224), Expect = 4e-20
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 12/161 (7%)
Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS-E 198
++ + LN T + L+LS+N I + A++F L + L L
Sbjct: 7 RIAFYRFCNLTQVPQVLNTT---ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIE--FIQNNTFEHL 255
I AF L + L LDL ++++ ++ F+ L L L L+ + +++ F +L
Sbjct: 64 IDKEAFRNLPN-LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 256 VNLKSISLSGNKLTRIPD---FIHNKRLSHLNLGYNFLNEL 293
L + LS N++ + F L ++ N + +
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163
Score = 83.7 bits (207), Expect = 6e-18
Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 22/229 (9%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYL 111
K+ + + +NHI I++ + L++ N L T+ +P ++ + ++ N LV
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP-SIPDIFLSGNKLVTLP 397
Query: 112 ELNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLISTINLN--LNNTYYIKD 165
++N + I LS N ++ + H++ L L+ N S+ + + + ++
Sbjct: 398 KINL--TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 166 LILSYNQI-----SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
L L N + ++L + F L ++ LYL N ++ + F+ L + L L L +N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA-LRGLSLNSN 514
Query: 220 RLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
RLT ++ L+ L + N + + F +L + ++ NK
Sbjct: 515 RLTVLSHND-LPANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559
Score = 78.7 bits (194), Expect = 3e-16
Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 20/243 (8%)
Query: 81 NMDSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR- 137
NL Q L T E L ++ NY+ V + L+ + L + Y +
Sbjct: 11 YRFCNLTQVPQVLNTT-ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 138 ---KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISK--LNANTFRNL-NVFRLY 190
++ LDL ++ I ++ + +++ +L L + +S L FRNL + RL
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129
Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNL--KKLKYLYLHNNNIEFI 247
L N+I ++ G ++L+ +D +N++ + L K L + L N++
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189
Query: 248 QNNTFEHLVN------LKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVE 301
+ + +N L+ + +SGN T + +S L I+ +
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249
Query: 302 NEI 304
+ I
Sbjct: 250 HNI 252
Score = 68.7 bits (168), Expect = 5e-13
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Query: 201 DFAFNGLNS------TLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF-IQNNTF 252
+ F L T E L L N + + F L++L+ L L + I F
Sbjct: 10 FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 253 EHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVEN 302
+L NL+ + L +K+ + F L L L + L++ +L+ N
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 110 bits (277), Expect = 5e-28
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 163 IKDLILSYNQISKLNANT-FRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
L LS+N +S+L A L N+ L L N ++ I AF + + L +LDL +N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSSNH 99
Query: 221 LTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHN 277
L + F +L+ L+ L L+NN+I + N FE + L+ + LS N+++R P
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159
Query: 278 KRLSHLNLGYNFLNEL 293
+L L L N+L
Sbjct: 160 NKLPKLMLLDLSSNKL 175
Score = 92.6 bits (230), Expect = 1e-21
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 13/162 (8%)
Query: 117 TSLKWIVLSNNYI----KEFVIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYN 171
+ + LS+N + E+ ++ L LS+N ++ I+ ++ L LS N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN----Q 226
+ L+ F +L + L L N I + AF + L+ L L N+++ +
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISRFPVELIK 157
Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK--SISLSGN 266
L KL L L +N ++ + + L + L N
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 65.6 bits (160), Expect = 3e-12
Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 71/216 (32%)
Query: 35 EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDS 92
N ++ L A W+P L +L + NH++ I + ++ +L++ SN L TLD
Sbjct: 47 SHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105
Query: 93 LPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIST 152
S + +L+ ++L N
Sbjct: 106 -----FLFS-------------DLQALEVLLLYN-------------------------- 121
Query: 153 INLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLN--S 209
N I ++ N F ++ + +LYL N+IS N
Sbjct: 122 ------------------NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 210 TLEFLDLENNRLTNI-NQCFRNLKKLK--YLYLHNN 242
L LDL +N+L + + L LYLHNN
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 109 bits (274), Expect = 8e-28
Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 26/254 (10%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
+ L + N + QI + L L E L++++N L L+L
Sbjct: 35 NVKELDLSGNPLSQIS--------------AADLAPFTKL----ELLNLSSNVLYETLDL 76
Query: 114 NRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
+++L+ + L+NNY++E + IE L +NN IS ++ + K++ L+ N+I
Sbjct: 77 ESLSTLRTLDLNNNYVQE--LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLANNKI 132
Query: 174 SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
+ L V L LK N+I ++ + TLE L+L+ N + ++
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFA 191
Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFLN 291
KLK L L +N + F+ F+ + ISL NKL I ++ L H +L N +
Sbjct: 192 KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250
Query: 292 ELILESSIVENEII 305
L +N+ +
Sbjct: 251 CGTLRDFFSKNQRV 264
Score = 102 bits (256), Expect = 3e-25
Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 11/246 (4%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
KL L + N +++ +L ++ L++++N +Q L P +ETL ANN + + +
Sbjct: 59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS-IETLHAANNNI-SRVSC 116
Query: 114 NRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN--LNNTYYIKDLIL 168
+R K I L+NN I R ++ LDL N I T+N ++ ++ L L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 169 SYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
YN I + + L L NK++ + F + ++ L NN+L I +
Sbjct: 177 QYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGP-EFQSAAG-VTWISLRNNKLVLIEKAL 233
Query: 229 RNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
R + L++ L N + F +++++ K + + + G
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 288 NFLNEL 293
+L
Sbjct: 294 YCCEDL 299
Score = 92.7 bits (231), Expect = 8e-22
Identities = 40/214 (18%), Positives = 87/214 (40%), Gaps = 16/214 (7%)
Query: 87 LQTLDSLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYIKEF---VIPNRKHIE 141
+ + + V ++ L L ++K + LS N + + + +E
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 142 KLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHD 201
L+LS+N++ L+L + ++ L L+ N + +L ++ L+ N IS +
Sbjct: 62 LLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVGP----SIETLHAANNNISRVSC 116
Query: 202 FAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTF-EHLVNLK 259
G + + L NN++T + + +++YL L N I+ + L+
Sbjct: 117 SRGQGK----KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 260 SISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
++L N + + + +L L+L N L +
Sbjct: 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
Score = 85.0 bits (211), Expect = 5e-19
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 133 VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLY 190
+ N + ++++ + + + + +K+L LS N +S+++A + L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250
L N + E D STL LDL NN + + ++ L+ NNNI + +
Sbjct: 65 LSSNVLYETLDL---ESLSTLRTLDLNNNYVQEL----LVGPSIETLHAANNNISRVSCS 117
Query: 251 TFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSI 299
+ K+I L+ NK+T + D R+ +L+L N ++ +
Sbjct: 118 RGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 10/219 (4%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYLV- 108
+ TL N+I ++ + + + + +N + L L ++ L + N +
Sbjct: 100 SIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 109 --NYLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKD 165
+L+ + L N+I + ++ LDLS+N ++ + + +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218
Query: 166 LILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
+ L N++ + + N+ L+ N F N ++ + + +
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
+ E + + L+ L
Sbjct: 279 N-EEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 108 bits (271), Expect = 8e-28
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNL-NNTYYIKDLILSYNQ 172
S K + LS N ++ + ++ LDLS I TI + ++ LIL+ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI--NQCFR 229
I L F L ++ +L ++ + +F L TL+ L++ +N + + + F
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFS 146
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLK----SISLSGNKLTRIPDFI-HNKRLSHLN 284
NL L++L L +N I+ I L + S+ LS N + I RL L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206
Query: 285 LGYNFLNEL 293
L N L +
Sbjct: 207 LDTNQLKSV 215
Score = 98.9 bits (247), Expect = 3e-24
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 23/214 (10%)
Query: 93 LPKTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLD 144
LP + + L ++ N L + L L+ + LS I+ I + H+ L
Sbjct: 26 LPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLI 82
Query: 145 LSNNLISTINLNL-NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH-D 201
L+ N I ++ L + ++ L+ ++ L +L + L + N I
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 202 FAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKY----LYLHNNNIEFIQNNTFEHLV 256
F+ L + LE LDL +N++ +I R L ++ L L N + FIQ F+ +
Sbjct: 143 EYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200
Query: 257 NLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
LK ++L N+L +PD F L + L N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 87.3 bits (217), Expect = 4e-20
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
L L FN + + ++F L+ LDL + I + +++L L L L N I+
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELIL 295
+ F L +L+ + L + + H K L LN+ +N + L
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Score = 82.7 bits (205), Expect = 2e-18
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 31/210 (14%)
Query: 80 LNMDSNLLQTL-----DSLPKTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNNYIKE 131
L++ N L+ L S P+ ++ L ++ + +E ++ L ++L+ N I+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 132 FVIPNR-----KHIEKLDLSNNLISTINL----NLNNTYYIKDLILSYNQISKL-NANTF 181
+ ++KL ++++ +L K+L +++N I F
Sbjct: 91 --LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL---KELNVAHNLIQSFKLPEYF 145
Query: 182 RNL-NVFRLYLKFNKISEIHDFAFNGLNS---TLEFLDLENNRLTNI-NQCFRNLKKLKY 236
NL N+ L L NKI I+ L+ LDL N + I F+ ++ LK
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKE 204
Query: 237 LYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
L L N ++ + + F+ L +L+ I L N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 73.5 bits (181), Expect = 3e-15
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL--- 90
N + L + ++ +L L + I IE+ + L + N +Q+L
Sbjct: 37 FNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 91 --DSLPKTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNNYIKEFVIP----NRKHIE 141
L + L L + LE + + +LK + +++N I+ F +P N ++E
Sbjct: 95 AFSGLSSL-QKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 142 KLDLSNNLISTINLNL-----NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKI 196
LDLS+N I +I L LS N ++ + F+ + + L L N++
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212
Query: 197 SEIHDFAFNGLNSTLEFLDLENN 219
+ D F+ L S L+ + L N
Sbjct: 213 KSVPDGIFDRLTS-LQKIWLHTN 234
Score = 70.8 bits (174), Expect = 3e-14
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
L + + LDL N L ++ + F + +L+ L L I+ I++ ++ L +L ++ L+
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
GN + + F L L L L
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 112 bits (281), Expect = 1e-27
Identities = 47/256 (18%), Positives = 105/256 (41%), Gaps = 13/256 (5%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP-KTMETLSVANNYLVNYLE 112
+++ + I ++++ + L + + +L K+++ L+ +N N
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
+ SL+++ LS N + ++ ++ LDLS N + T++ N ++ L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 168 LSYNQISKL-NANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-- 223
++ + ++ + F +L N+ L + + FNGL+S LE L + N
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENF 461
Query: 224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLS 281
+ F L+ L +L L +E + F L +L+ +++S N + + L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 282 HLNLGYNFLNELILES 297
L+ N + +
Sbjct: 522 VLDYSLNHIMTSKKQE 537
Score = 97.8 bits (244), Expect = 8e-23
Identities = 57/269 (21%), Positives = 102/269 (37%), Gaps = 29/269 (10%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANNYL 107
+L L + I IE+ + L + N +Q+L +++ L L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 108 VNYLE--LNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLISTIN----LNL 157
+ + + +LK + +++N I+ F +P N ++E LDLS+N I +I L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 158 NN-TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLNSTLEFLD 215
+ L LS N ++ + F+ + + +L L+ N S + GL + LE
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHR 231
Query: 216 LENNRLTNINQC-------FRNLKKLKYLYLHNNNIEFIQNN---TFEHLVNLKSISLSG 265
L N L L +++ ++ F L N+ S SL
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 266 NKLTRIPDFIHNKRLSHLNLGYNFLNELI 294
+ R+ DF +N HL L +
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Score = 93.9 bits (234), Expect = 2e-21
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 13/196 (6%)
Query: 116 MTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYN 171
S K + LS N ++ + ++ LDLS I TI + ++ LIL+ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN--QCF 228
I L F L ++ +L ++ + +F L + L+ L++ +N + + + F
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYF 145
Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK----SISLSGNKLTRIPDFI-HNKRLSHL 283
NL L++L L +N I+ I L + S+ LS N + I RL L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205
Query: 284 NLGYNFLNELILESSI 299
L NF + ++++ I
Sbjct: 206 TLRNNFDSLNVMKTCI 221
Score = 91.6 bits (228), Expect = 1e-20
Identities = 49/266 (18%), Positives = 105/266 (39%), Gaps = 22/266 (8%)
Query: 50 EIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTM----------ET 99
E+ + F E ++ + + + + L ++ L LD + +
Sbjct: 228 EVHRLVLGEFRNEGNLEKF-DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 100 LSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNN 159
S+ + + + + + + L N +F K +++L ++N ++
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346
Query: 160 TYYIKDLILSYNQISKLN--ANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL 216
++ L LS N +S + + ++ L L FN + + F GL LE LD
Sbjct: 347 P-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQ-LEHLDF 403
Query: 217 ENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTR--IP 272
+++ L + F +L+ L YL + + + N F L +L+ + ++GN +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 273 DFIHN-KRLSHLNLGYNFLNELILES 297
D + L+ L+L L +L +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTA 489
Score = 88.2 bits (219), Expect = 1e-19
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 8/161 (4%)
Query: 142 KLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH 200
I NL + K+L LS+N + L + +F + + L L +I I
Sbjct: 11 TYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 201 DFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
D A+ L+ L L L N + ++ F L L+ L N+ ++N HL LK
Sbjct: 69 DGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 260 SISLSGNKLTRIP---DFIHNKRLSHLNLGYNFLNELILES 297
++++ N + F + L HL+L N + +
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 78.5 bits (194), Expect = 3e-16
Identities = 51/296 (17%), Positives = 104/296 (35%), Gaps = 53/296 (17%)
Query: 54 KLTTLFIGENHIHQI---ENLNGFRSILWLNMDSNLLQT--------LDSLPKTMETLSV 102
L L + N I E + ++ L++ SN +Q+ L +P +L +
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 103 ANNYLVNY-LELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTIN--- 154
+ N + + L + L NN+ V+ +E L
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 155 -LNLNNTYYIKDLILSYNQISKLNA------NTFRNL-NVFRLYLKFNKISEIHDFAFNG 206
+ + + +L + +++ L+ + F L NV L I + DF++N
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN- 303
Query: 207 LNSTLEFLDLENNRLT--------------------NINQCFRNLKKLKYLYLHNNNIEF 246
+ L+L N + +L L++L L N + F
Sbjct: 304 --FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361
Query: 247 IQ--NNTFEHLVNLKSISLSGNKLTRIP-DFIHNKRLSHLNLGYNFLNELILESSI 299
+ + +LK + LS N + + +F+ ++L HL+ ++ L ++ S
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Score = 74.7 bits (184), Expect = 5e-15
Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 17/227 (7%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLDSLP 94
N ++ + S L L + N + + N G + L+ + L+ +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 95 -----KTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKL 143
+ + L +++ + N ++SL+ + ++ N +E +P+ +++ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 144 DLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHD 201
DLS + ++ N+ ++ L +S+N L+ ++ L ++ L N I
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 202 FAFNGLNSTLEFLDLENNRLT---NINQCFRNLKKLKYLYLHNNNIE 245
S+L FL+L N + +K + L + +E
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 108 bits (271), Expect = 4e-27
Identities = 48/245 (19%), Positives = 107/245 (43%), Gaps = 12/245 (4%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
+T L + + I+ + ++ +LN++ N + + L + L + N + +
Sbjct: 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI 103
Query: 111 LELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
L +T+L+ + L+ + I + + N + L+L N + L+N + L ++
Sbjct: 104 SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163
Query: 170 YNQISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
+++ + +L L L +N+I +I L S L + N++T+I
Sbjct: 164 ESKVKDVTPIANLTDLYS--LSLNYNQIEDIS--PLASLTS-LHYFTAYVNQITDI-TPV 217
Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
N+ +L L + NN I + +L L + + N+++ I +L LN+G N
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275
Query: 289 FLNEL 293
++++
Sbjct: 276 QISDI 280
Score = 108 bits (271), Expect = 4e-27
Identities = 51/245 (20%), Positives = 108/245 (44%), Gaps = 14/245 (5%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT----LDSLPKTMETLSVANNYLVN 109
L L++ E++I I L + LN+ +N + L ++ + L+V + + +
Sbjct: 111 NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTG-LNYLTVTESKVKD 169
Query: 110 YLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
+ +T L + L+ N I++ + + + N I+ I + N + L +
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKI 228
Query: 169 SYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC 227
N+I+ L+ NL + L + N+IS+I+ + L+ L++ +N++++I
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDL---TKLKMLNVGSNQISDI-SV 282
Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
NL +L L+L+NN + L NL ++ LS N +T I ++ +
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342
Query: 288 NFLNE 292
+ +
Sbjct: 343 QVIKK 347
Score = 107 bits (270), Expect = 6e-27
Identities = 51/250 (20%), Positives = 108/250 (43%), Gaps = 14/250 (5%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
L L + N I I L+ + L + +N + + +L + L + + + +
Sbjct: 66 TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI 125
Query: 111 LELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
L +T + + L N+ + + N + L ++ + + + + N + L L
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSL 184
Query: 169 SYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC 227
+YNQI ++ +L ++ N+I++I + L L + NN++T+++
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTR-LNSLKIGNNKITDLS-P 238
Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
NL +L +L + N I I N + L LK +++ N+++ I + +L+ L L
Sbjct: 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNN 296
Query: 288 NFLNELILES 297
N L +E
Sbjct: 297 NQLGNEDMEV 306
Score = 103 bits (259), Expect = 2e-25
Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 12/244 (4%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYLE 112
TL I+QI + + + + + +++ L VA + +
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61
Query: 113 LNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
+ +T+L+++ L+ N I + + N + L + N I+ I+ L N +++L L+ +
Sbjct: 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED 120
Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
IS ++ NL ++ L L N + + L +L + +++ ++ N
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTG-LNYLTVTESKVKDVTP-IAN 175
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFL 290
L L L L+ N IE I L +L + N++T I + RL+ L +G N +
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI 233
Query: 291 NELI 294
+L
Sbjct: 234 TDLS 237
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 109 bits (274), Expect = 1e-26
Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 31/291 (10%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDS----LPKTMETLSVANNYLV- 108
KL L N + +E + L +D N ++ + +E L ++N L
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633
Query: 109 --NYLELNRMTSLKWIVLSNNYIKEFV--------IPNRKHIEKLDLSNNLISTINLN-L 157
N + + + S N I + + LS N I
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693
Query: 158 NNTYYIKDLILSYNQISKLNANTFRNLNVF--------RLYLKFNKISEIHDFAFNGLNS 209
I +ILS N ++ + N+ + + + L+FNK++ + D
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753
Query: 210 TLEFLDLENNRLTNINQCFRNLKKLKYLYL------HNNNIEFIQNNTFEHLVNLKSISL 263
L +D+ N ++ N +LK + N I +L + +
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813
Query: 264 SGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314
N + ++ + + +L L++ N + + S E +L++
Sbjct: 814 GSNDIRKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
Score = 91.5 bits (227), Expect = 2e-20
Identities = 46/285 (16%), Positives = 96/285 (33%), Gaps = 22/285 (7%)
Query: 33 ENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLD 91
++ N+ E++ I K T + N I I + + + + ++ +
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464
Query: 92 SLPKTMETLSVANNYLVNY-LELNRMTSLKWIVLSNNYIKEFV---IPNRKHIEKLDLSN 147
+ S N L + + L + L N + + + ++ L+++
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524
Query: 148 NLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGL 207
N + + + D + +I Y+ +N + E A
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIF-------------YMGYNNLEEFPASASLQK 571
Query: 208 NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
L LD +N++ ++ F KL L L N IE I + ++ + S NK
Sbjct: 572 MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630
Query: 268 LTRIPDFIHNKRLSHL---NLGYNFLNELILESSIVENEIIDQNM 309
L IP+ + K + + + YN + S ++ N
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675
Score = 88.0 bits (218), Expect = 2e-19
Identities = 40/276 (14%), Positives = 90/276 (32%), Gaps = 35/276 (12%)
Query: 48 SPEIQN--KLTTLFIGENHIHQIENLNGFRSI-------LWLNMDSNLLQTLDSLPKTME 98
I +L L G + L G + + + + + +
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 99 TLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---------VIPNRKHIEKLDLSNNL 149
+ + + E+ + I L + I I ++ + +N+
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459
Query: 150 ISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLN 208
+ N+ ++ +D Y + + ++ NL ++ + L L
Sbjct: 460 FTYDNIAVDW----EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515
Query: 209 STLEFLDLENNRLT----------NINQCFRNLKKLKYLYLHNNNIEFI-QNNTFEHLVN 257
L+ L++ NR + K++ Y+ NN+E + + + +V
Sbjct: 516 E-LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574
Query: 258 LKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
L + NK+ + F N +L+ L L YN + E+
Sbjct: 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEI 610
Score = 74.9 bits (184), Expect = 5e-15
Identities = 37/253 (14%), Positives = 86/253 (33%), Gaps = 35/253 (13%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRS---ILWLNMDSNLLQTL---------DSLPKTMETL 100
+++ L N + I N+ +S + ++ N + + D T+
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678
Query: 101 SVANNYLVN--YLELNRMTSLKWIVLSNNYIKEF----------VIPNRKHIEKLDLSNN 148
+++ N + + + I+LSNN + N + +DL N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738
Query: 149 LISTI--NLNLNNTYYIKDLILSYNQISKL-----NANTFRNLNVFR-LYLKFNKISEIH 200
++++ + Y+ ++ +SYN S N++ + + + N+I
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798
Query: 201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
S L L + +N + +++ +L L + +N I + +
Sbjct: 799 PTGITTCPS-LIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855
Query: 261 ISLSGNKLTRIPD 273
L +K I
Sbjct: 856 YVLLYDKTQDIRG 868
Score = 71.4 bits (175), Expect = 6e-14
Identities = 37/246 (15%), Positives = 79/246 (32%), Gaps = 46/246 (18%)
Query: 98 ETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINL 155
LS+A + + ++T LK + + D+S I +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 156 NLNNTY-----------YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAF 204
+ + ++D I ++ + ++ +L ++ N+I+ I A
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AI 444
Query: 205 NGLNSTLEFLDLENNRLTNINQC--------------------FRNLKKLKYLYLHNNNI 244
L L+ + N+ T N + NLK L + L+N
Sbjct: 445 QRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503
Query: 245 EFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN-----------KRLSHLNLGYNFLNEL 293
+ L L+S++++ N+ + ++ +GYN L E
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563
Query: 294 ILESSI 299
+S+
Sbjct: 564 PASASL 569
Score = 52.6 bits (126), Expect = 8e-08
Identities = 17/164 (10%), Positives = 46/164 (28%), Gaps = 10/164 (6%)
Query: 156 NLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214
+L+N + L L+ + L + L + + + +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 215 DLENNRLTNINQCF-------RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
+ ++ + + F L+ N ++ I+ ++ L + I N+
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT-QIGNLTNR 436
Query: 268 LTRIPDFIHN-KRLSHLNLGYNFLNELILESSIVENEIIDQNML 310
+T I I +L + + + +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480
Score = 41.4 bits (97), Expect = 3e-04
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 208 NSTLEFLDLENNRLTN-INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
N + L L + L +LK L ++ + + +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381
Query: 267 KLTRIPD---FIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314
++ +++RL+ +L + +N I ++ I N
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432
Score = 39.9 bits (93), Expect = 0.001
Identities = 22/169 (13%), Positives = 58/169 (34%), Gaps = 20/169 (11%)
Query: 36 DNQIAELETANWSPEIQN-----KLTTLFIGENHIHQIEN---LNGFRSILWLNMDSNLL 87
+N + + + P+ N LTT+ + N + + + + +++ N
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765
Query: 88 QTLDSLPKTMETLSV---------ANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIPN 136
+ + P L N ++ + SL + + +N I++
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825
Query: 137 RKHIEKLDLSNNLISTINLNLNNTYYIKDLI-LSYNQISKLNANTFRNL 184
+ LD+++N +I++ Y + L Y++ + +
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 105 bits (264), Expect = 6e-26
Identities = 52/296 (17%), Positives = 110/296 (37%), Gaps = 35/296 (11%)
Query: 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSN 85
+ + + + + N + + + ++ L+ FR + LN++
Sbjct: 20 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79
Query: 86 LLQTLD----SLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYIKEF---VIPN 136
++ +D + T++ L + N + + L +VL N + + N
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL----------- 184
+ L +SNN + I + T +++L LS N+++ ++ + +L
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199
Query: 185 ------NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLY 238
V L N I+ + L L L++N LT+ N L +
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTAW-LLNYPGLVEVD 254
Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN-KRLSHLNLGYNFLNEL 293
L N +E I + F + L+ + +S N+L + + L L+L +N L +
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 310
Score = 100 bits (250), Expect = 5e-24
Identities = 59/257 (22%), Positives = 118/257 (45%), Gaps = 15/257 (5%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD-S 92
N ++ L + KLTTL + N++ +IE+ S+ L + SN L +D S
Sbjct: 126 RNDLSSLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183
Query: 93 LPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIST 152
L ++ +V+ N L L +++ + S+N I P + L L +N ++
Sbjct: 184 LIPSLFHANVSYNLLST---LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240
Query: 153 INLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTL 211
L N + ++ LSYN++ K+ + F + + RLY+ N++ + + + + L
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPT-L 297
Query: 212 EFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
+ LDL +N L ++ + +L+ LYL +N+I ++ +T LK+++LS N
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCN 354
Query: 272 PDFIHNKRLSHLNLGYN 288
+ ++ +
Sbjct: 355 SLRALFRNVARPAVDDA 371
Score = 70.8 bits (174), Expect = 5e-14
Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 14/206 (6%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSLPKTMETLSVANNYLVNYLE 112
L + N + + ++ L+ N + + + + L + +N L +
Sbjct: 187 SLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW 243
Query: 113 LNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
L L + LS N +++ + +E+L +SNN + +NL +K L LS
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303
Query: 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
+N + + N + + LYL N I + + L + L L +N R
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN----LTLSHNDWDCN--SLR 357
Query: 230 NL-KKLKYLYLHNNNIEFIQNNTFEH 254
L + + + + + + EH
Sbjct: 358 ALFRNVARPAVDDADQHCKIDYQLEH 383
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 105 bits (264), Expect = 1e-25
Identities = 63/262 (24%), Positives = 118/262 (45%), Gaps = 16/262 (6%)
Query: 53 NKLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLD-----SLPKTMETLSVANN 105
N+ + ++ + Q ++ L++ N L + K +E L++++N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSN 68
Query: 106 YLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKD 165
L L+L +++L+ + L+NNY++E + IE L +NN IS ++ + K+
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQE--LLVGPSIETLHAANNNISRVSCSRGQG--KKN 124
Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
+ L+ N+I+ L V L LK N+I ++ + TLE L+L+ N + ++
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Query: 225 NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHL 283
KLK L L +N + F+ F+ + ISL NKL I ++ L H
Sbjct: 185 KGQV-VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242
Query: 284 NLGYNFLNELILESSIVENEII 305
+L N + L +N+ +
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRV 264
Score = 100 bits (251), Expect = 7e-24
Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 11/246 (4%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
KL L + N +++ +L ++ L++++N +Q L P +ETL ANN + + +
Sbjct: 59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS-IETLHAANNNI-SRVSC 116
Query: 114 NRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN--LNNTYYIKDLIL 168
+R K I L+NN I R ++ LDL N I T+N ++ ++ L L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 169 SYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
YN I + + L L NK++ + F + ++ L NN+L I +
Sbjct: 177 QYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGP-EFQSAAG-VTWISLRNNKLVLIEKAL 233
Query: 229 RNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
R + L++ L N + F +++++ K + + + G
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 288 NFLNEL 293
+L
Sbjct: 294 YCCEDL 299
Score = 79.1 bits (195), Expect = 1e-16
Identities = 39/186 (20%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 116 MTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYN 171
K ++++ +K+ + + ++++LDLS N +S I+ L ++ L LS N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
+ + +L + L L N + E+ + ++E L NN ++ ++
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRVS--CSR 118
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP--DFIHN-KRLSHLNLGY 287
+ K +YL NN I +++ ++ + L N++ + + + L HLNL Y
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 288 NFLNEL 293
NF+ ++
Sbjct: 179 NFIYDV 184
Score = 78.7 bits (194), Expect = 2e-16
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 133 VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLY 190
+ N + ++++ + + + + +K+L LS N +S+++A + L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250
L N + E D STL LDL NN + + ++ L+ NNNI + +
Sbjct: 65 LSSNVLYETLDL---ESLSTLRTLDLNNNYVQEL----LVGPSIETLHAANNNISRVSCS 117
Query: 251 TFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSI 299
+ K+I L+ NK+T + D R+ +L+L N ++ +
Sbjct: 118 RGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165
Score = 73.7 bits (181), Expect = 1e-14
Identities = 33/295 (11%), Positives = 82/295 (27%), Gaps = 45/295 (15%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD-- 91
+N I+ + S +++ N I + + + +L++ N + T++
Sbjct: 108 NNNISRV-----SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162
Query: 92 ---SLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF--VIPNRKHIEKLDLS 146
+ T+E L++ N++ + LK + LS+N + + + + L
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 147 NNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNG 206
NN + I L + ++ L N F + N + + ++
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282
Query: 207 L----------------------------NSTLEFLDLENNRLTNINQCFRNLKKLKYLY 238
L + + + N + + +
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342
Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ + ++ L N R +H L +
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS---NGRRAHAELDGTLQQAV 394
Score = 52.5 bits (126), Expect = 8e-08
Identities = 29/266 (10%), Positives = 75/266 (28%), Gaps = 18/266 (6%)
Query: 54 KLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLD---SLPKTMETLSVANNYLV- 108
KL TL + N + + + W+++ +N L ++ + +E + N
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251
Query: 109 NYLELNRMTSLKWIVLSNNYIKE---FVIPNRKHIEKLDLSNNLISTI------NLNLNN 159
L + + ++ +K+ + L
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311
Query: 160 TYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
L ++ +L + + + D + L+ +
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQA-KITLEQKKK 370
Query: 220 RLTNINQC-FRNLKKLKYLYLHNNNIEFIQNNTFE--HLVNLKSISLSGNKLTRIPDFIH 276
L R +L +Q+ T E L L++I ++ +
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430
Query: 277 NKRLSHLNLGYNFLNELILESSIVEN 302
N + ++ + +L E++ ++
Sbjct: 431 NNAIRDWDMYQHKETQLAEENARLKK 456
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 101 bits (253), Expect = 1e-25
Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 164 KDLILSYNQISKLNAN-TFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
+L L+ N+ + L A F+ L + ++ NKI++I + AF G + + + L +NRL
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-VNEILLTSNRL 93
Query: 222 TNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNK 278
N+ ++ F+ L+ LK L L +N I + N++F L +++ +SL N++T + F
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153
Query: 279 RLSHLNLGYN 288
LS LNL N
Sbjct: 154 SLSTLNLLAN 163
Score = 79.7 bits (197), Expect = 8e-18
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 185 NVFRLYLKFNKISEIHDFA-FNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNN 242
L L N+ + + F L L ++ NN++T+I + F + + L +N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 243 NIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFL 290
+E +Q+ F+ L +LK++ L N++T + + FI + L+L N +
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141
Score = 74.3 bits (183), Expect = 7e-16
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 124 LSNNYIKEF----VIPNRKHIEKLDLSNNLISTINLN----LNNTYYIKDLILSYNQISK 175
L+NN + + K++ SNN I+ I + + +++L+ N++
Sbjct: 39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG---VNEILLTSNRLEN 95
Query: 176 LNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKK 233
+ F+ L ++ L L+ N+I+ + + +F GL+S + L L +N++T + F L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS-VRLLSLYDNQITTVAPGAFDTLHS 154
Query: 234 LKYLYLHNN 242
L L L N
Sbjct: 155 LSTLNLLAN 163
Score = 68.5 bits (168), Expect = 8e-14
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 206 GLNSTLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
+ L L NN T + F+ L +L+ + NN I I+ FE + I L
Sbjct: 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88
Query: 264 SGNKLTRIP--DFIHNKRLSHLNLGYNFLNEL 293
+ N+L + F + L L L N + +
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120
Score = 31.2 bits (71), Expect = 0.30
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNY 106
+ + + N + +++ G S+ L + SN + + L + LS+ +N
Sbjct: 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS-VRLLSLYDNQ 140
Query: 107 LVNYLE--LNRMTSLKWIVLSNN 127
+ + + SL + L N
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLAN 163
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 106 bits (266), Expect = 1e-25
Identities = 61/268 (22%), Positives = 115/268 (42%), Gaps = 22/268 (8%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD----SLPKTMETLSVANNYL 107
+LT+L +G N I ++E + LN+ N L L + + L + +N +
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 108 --VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTIN---LNLNN 159
+ + +L + LS+N + +++++L LSNN I + L++
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169
Query: 160 TYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIH--DFAFNGLNSTLEFLDL 216
+K L LS NQI + + F + +F L+L ++ N+++ L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 217 ENNRLTNINQ-CFRNLK--KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
N++L+ + F LK L L L NN+ + N++F L L+ L N + +
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 274 --FIHNKRLSHLNLGYNFLNELILESSI 299
+ +LNL +F + I +S+
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASL 317
Score = 105 bits (263), Expect = 4e-25
Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 17/231 (7%)
Query: 80 LNMDSNLLQTL-DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFV 133
+ L + D LP + L++ +N L + R + L + + N I +
Sbjct: 9 ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68
Query: 134 IPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYL 191
++ L+L +N +S ++ + +L L N I K+ N F N+ L L
Sbjct: 69 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128
Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ---CFRNLKKLKYLYLHNNNIEFIQ 248
N +S L + L+ L L NN++ + LK L L +N I+
Sbjct: 129 SHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187
Query: 249 NNTFEHLVNLKSISLSGNKLTRIPD-----FIHNKRLSHLNLGYNFLNELI 294
F + L + L+ +L + N + +L+L + L+
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Score = 104 bits (262), Expect = 5e-25
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 8/188 (4%)
Query: 117 TSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISK 175
S + S+ + + +I L+L++N + + N + L + +N ISK
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 176 LNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKK 233
L + L + L L+ N++S++ D F + L L L +N + I N F K
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQKN 122
Query: 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD----FIHNKRLSHLNLGYNF 289
L L L +N + + T L NL+ + LS NK+ + N L L L N
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 290 LNELILES 297
+ E
Sbjct: 183 IKEFSPGC 190
Score = 103 bits (259), Expect = 1e-24
Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 41/284 (14%)
Query: 54 KLTTLFIGENHIHQIEN-----------LNGFRSILWLNMDSNLLQTLDSLP----KTME 98
+L F+ N+I + + LN RS ++ L +D K +E
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332
Query: 99 TLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIPNR-------KHIEKLDLSNNL 149
L++ +N + + + +LK++ LSN++ + N + L+L+ N
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392
Query: 150 ISTINLN-LNNTYYIKDLILSYNQISK-LNANTFRNL-NVFRLYLKFNKISEIHDFAFNG 206
IS I + + +++ L L N+I + L +R L N+F +YL +NK ++ +F
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452
Query: 207 LNSTLEFLDLENNRLTNINQC---FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
+ S L+ L L L N++ F+ L+ L L L NNNI I ++ E L L+ + L
Sbjct: 453 VPS-LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511
Query: 264 SGNKLTRIPD----------FIHNKRLSHLNLGYNFLNELILES 297
N L R+ L LNL N +E+ +E
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555
Score = 103 bits (258), Expect = 1e-24
Identities = 57/306 (18%), Positives = 122/306 (39%), Gaps = 33/306 (10%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSL 93
++Q++ + LT L + N+++ + N + + ++ N +Q L S
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290
Query: 94 P----KTMETLSVANNYLVNYLELNR-----------MTSLKWIVLSNNYIKE---FVIP 135
+ L++ ++ + L + L+ + + +N I +
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350
Query: 136 NRKHIEKLDLSNNLISTINLNLNN-----TYYIKDLILSYNQISKLNANTFRNL-NVFRL 189
+++ L LSN+ S L + L L+ N+ISK+ ++ F L ++ L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 190 YLKFNKIS-EIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFI 247
L N+I E+ + GL + + + L N+ + F + L+ L L ++ +
Sbjct: 411 DLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 248 QN--NTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVENE 303
+ + F+ L NL + LS N + I D ++L L+L +N L L ++
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 304 IIDQNM 309
+ +
Sbjct: 530 YFLKGL 535
Score = 103 bits (258), Expect = 2e-24
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 26/270 (9%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLD-----SLPKTMETLS 101
++ +T L + N + ++ + + L++ N + L+ LP ++ L+
Sbjct: 21 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM-LKVLN 79
Query: 102 VANNYL--VNYLELNRMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLN 156
+ +N L ++ T+L + L +N I+ +K++ LDLS+N +S+ L
Sbjct: 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 157 -LNNTYYIKDLILSYNQISKLNANTFRNLNVFRL---YLKFNKISEIHDFAFNGLNSTLE 212
+++L+LS N+I L + L L N+I E F+ + L
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR-LF 198
Query: 213 FLDLENNRLTNIN----QCFRNLKKLKYLYLHNNNIEFIQNNTFEHL--VNLKSISLSGN 266
L L N +L ++ L L N+ + N TF L NL + LS N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 267 KLTRIPD--FIHNKRLSHLNLGYNFLNELI 294
L + + F +L + L YN + L
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Score = 102 bits (255), Expect = 3e-24
Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 32/275 (11%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQ-------TLDSLPKTM-ETLSVA 103
L L + +N I I++ G ++ +L++ ++ T SL + L++
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389
Query: 104 NNYLVNYLE--LNRMTSLKWIVLSNNYIKEFV----IPNRKHIEKLDLSNNLISTINLN- 156
N + + + L+ + L N I + + ++I ++ LS N + N
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Query: 157 LNNTYYIKDLILSYNQISKLN--ANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEF 213
++ L+L + ++ + F+ L N+ L L N I+ I+D GL LE
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK-LEI 508
Query: 214 LDLENNRLTNI---------NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
LDL++N L + + L L L L +N + I F+ L LK I L
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
N L +P F + L LNL N + + +
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603
Score = 102 bits (255), Expect = 4e-24
Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 34/283 (12%)
Query: 54 KLTTLFIGENHIH-----QIENLNGFRSILWLNMDSNLLQTLDSL------PKTMETLSV 102
+L LF+ + ++ SI L++ ++ L T + + L +
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 103 ANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIST----- 152
+ N L V + L++ L N I+ + ++ L+L +
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 153 -----INLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS--EIHDFAF 204
+ + ++ L + N I + +N F L N+ L L + S + + F
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 205 NGL-NSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF-IQNNTFEHLVNLKSI 261
L +S L L+L N+++ I + F L L+ L L N I + + L N+ I
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 262 SLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVEN 302
LS NK ++ F L L L L + S +
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478
Score = 101 bits (254), Expect = 4e-24
Identities = 53/272 (19%), Positives = 108/272 (39%), Gaps = 37/272 (13%)
Query: 37 NQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP 94
+ L + + L L + +N I +IE+ + + L++ N +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE---- 420
Query: 95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIS 151
+ E + ++ I LS N + +++L L +
Sbjct: 421 -------------LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 152 TINLN---LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGL 207
++ + + L LS N I+ +N + L + L L+ N ++ + A G
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527
Query: 208 N-------STLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
S L L+LE+N I + F++L +LK + L NN+ + + F + V+LK
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587
Query: 260 SISLSGNKLTRIPDFI---HNKRLSHLNLGYN 288
S++L N +T + + + L+ L++ +N
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 99.7 bits (249), Expect = 2e-23
Identities = 64/274 (23%), Positives = 111/274 (40%), Gaps = 32/274 (11%)
Query: 52 QNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP----KTMETLSVANN 105
+ T I + +I++ + + LNM+ N + + S ++ LS++N+
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363
Query: 106 YL------VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTI--N 154
+ + L + L+ N I + H+E LDL N I
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423
Query: 155 LNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHD--FAFNGLNSTL 211
I ++ LSYN+ +L N+F + ++ RL L+ + + F L + L
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN-L 482
Query: 212 EFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNT--------FEHLVNLKSIS 262
LDL NN + NI + L+KL+ L L +NN+ + + + L +L ++
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 263 LSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELI 294
L N IP F L ++LG N LN L
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576
Score = 77.7 bits (192), Expect = 5e-16
Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 25/222 (11%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTM------ETLSVANN 105
+ +++ N Q+ S+ L + L+ +DS P L ++NN
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490
Query: 106 YL--VNYLELNRMTSLKWIVLSNNYIKEF-----------VIPNRKHIEKLDLSNNLIST 152
+ +N L + L+ + L +N + + H+ L+L +N
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550
Query: 153 INLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNST 210
I + + + +K + L N ++ L A+ F N ++ L L+ N I+ + F
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610
Query: 211 LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF 252
L LD+ N C + ++ + NI + ++
Sbjct: 611 LTELDMRFNPFDCT--CESIAWFVNWINETHTNIPELSSHYL 650
Score = 59.2 bits (144), Expect = 7e-10
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 208 NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
+ E D + +LT + + L L +N + + F L S+ + N
Sbjct: 3 TVSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 268 LTRIPD--FIHNKRLSHLNLGYNFLNELILES 297
++++ L LNL +N L++L ++
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 103 bits (258), Expect = 2e-25
Identities = 37/190 (19%), Positives = 81/190 (42%), Gaps = 9/190 (4%)
Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNL-NNTYYIKDLILSYNQ 172
++K + LSNN I + +++ L L++N I+TI + ++ ++ L LSYN
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDF-AFNGLNSTLEFLDLENNRLTNI-NQCFR 229
+S L+++ F+ L ++ L L N + + F+ L + T I + F
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGY 287
L L+ L + ++++ + + + + N+ + L + + + + L L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 288 NFLNELILES 297
L+
Sbjct: 232 TDLDTFHFSE 241
Score = 100 bits (252), Expect = 1e-24
Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 26/257 (10%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL--- 90
+N+I + ++ L L + N I+ IE + S+ L++ N L L
Sbjct: 61 NNRITYISNSDLQR--CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118
Query: 91 --DSLPKTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNNY----IKEFVIPNRKHIE 141
L + L++ N E + +T L+ + + N I+ +E
Sbjct: 119 WFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177
Query: 142 KLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL------NVFRLYLKFN 194
+L++ + + + L + + LIL Q L + L
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237
Query: 195 KISEIHDFAFNGL--NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF 252
SE+ N L T + + + L + + + L L N ++ + + F
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297
Query: 253 EHLVNLKSISLSGNKLT 269
+ L +L+ I L N
Sbjct: 298 DRLTSLQKIWLHTNPWD 314
Score = 88.3 bits (219), Expect = 5e-20
Identities = 45/262 (17%), Positives = 100/262 (38%), Gaps = 32/262 (12%)
Query: 55 LTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYL 107
+ +L + N I I N L ++ L + SN + T+ SL +E L ++ NYL
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEHLDLSYNYL 112
Query: 108 --VNYLELNRMTSLKWIVLSNNYIKE------FVIPNRKHIEKLDLSNNLISTINLN-LN 158
++ ++SL ++ L N K F + I ++ + + + I
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV-GNMDTFTKIQRKDFA 171
Query: 159 NTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLE 217
++++L + + + + +++ NV L L + + + + +S +E L+L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS-VECLELR 230
Query: 218 NNRLTNIN---------QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
+ L + + + + + ++ + + L + S N+L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQL 289
Query: 269 TRIPD--FIHNKRLSHLNLGYN 288
+PD F L + L N
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTN 311
Score = 75.9 bits (187), Expect = 1e-15
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 206 GLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
GL ++ LDL NNR+T I+ + L+ L L +N I I+ ++F L +L+ + LS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
N L+ + F L+ LNL N L
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 103 bits (258), Expect = 7e-25
Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 12/245 (4%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
+++TTL I I+ + ++ +N +N L + L + + + NN + +
Sbjct: 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI 105
Query: 111 LELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
L +T+L + L NN I + + N ++ +L+LS+N IS I+ L+ ++ L
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG 164
Query: 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
L RL + NK+S+I + LE L NN++++I
Sbjct: 165 NQVTDLKPLANLTTLE--RLDISSNKVSDISVL---AKLTNLESLIATNNQISDI-TPLG 218
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
L L L L+ N ++ I T L NL + L+ N+++ + +L+ L LG N
Sbjct: 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 276
Query: 290 LNELI 294
++ +
Sbjct: 277 ISNIS 281
Score = 99.7 bits (249), Expect = 1e-23
Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 14/249 (5%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
L L G N + ++ L ++ L++ SN + + L +E+L NN + +
Sbjct: 156 TSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 214
Query: 111 LELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
L +T+L + L+ N +K+ + + ++ LDL+NN IS + L+ + +L L
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLG 273
Query: 170 YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
NQIS ++ L + L L N++ +I + L +L L N +++I+
Sbjct: 274 ANQISNISP--LAGLTALTNLELNENQLEDISPISNL---KNLTYLTLYFNNISDISP-V 327
Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
+L KL+ L+ +NN + + ++ +L N+ +S N+++ + + R++ L L
Sbjct: 328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385
Query: 289 FLNELILES 297
+
Sbjct: 386 AWTNAPVNY 394
Score = 97.7 bits (244), Expect = 6e-23
Identities = 59/245 (24%), Positives = 111/245 (45%), Gaps = 14/245 (5%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
+ +G+ ++ + + L D ++++D + + ++ +NN L +
Sbjct: 25 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 84
Query: 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
L +T L I+++NN I + + N ++ L L NN I+ I+ L N + L LS
Sbjct: 85 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSS 143
Query: 171 NQISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
N IS ++A + +L + + + + +TLE LD+ +N++++I+
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANL------TTLERLDISSNKVSDISV-LA 196
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
L L+ L NN I I L NL +SL+GN+L I L+ L+L N
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254
Query: 290 LNELI 294
++ L
Sbjct: 255 ISNLA 259
Score = 94.3 bits (235), Expect = 9e-22
Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 11/244 (4%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYL 111
L +L N I I L ++ L+++ N L+ + +L + L +ANN + N
Sbjct: 200 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259
Query: 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
L+ +T L + L N I + + L+L+ N + I+ ++N + L L +
Sbjct: 260 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYF 318
Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
N IS ++ +L + RL+ NK+S++ A + + +L +N+++++
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANL---TNINWLSAGHNQISDLTP-LA 372
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
NL ++ L L++ N ++ ++ L + ++ +N
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432
Query: 290 LNEL 293
+
Sbjct: 433 PSYT 436
Score = 77.3 bits (191), Expect = 5e-16
Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 11/177 (6%)
Query: 122 IVLSNNYIKE-FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-N 179
+ + I + F K L ++ ++ + + L I ++
Sbjct: 7 TITQDTPINQIFTDTALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKSIDGVE 65
Query: 180 TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYL 239
NL ++ N++++I + L + + NN++ +I NL L L L
Sbjct: 66 YLNNLT--QINFSNNQLTDITPL---KNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119
Query: 240 HNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILE 296
NN I I ++L NL + LS N ++ I L L+ G + L
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 174
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 98.6 bits (246), Expect = 1e-24
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
+ L N I + F + R+ L N+ISE+ AF GL S L L L N++T +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYGNKITEL 95
Query: 225 -NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLS 281
F L L+ L L+ N I ++ + F+ L NL +SL NKL I F + +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 282 HLNLGYN 288
++L N
Sbjct: 156 TMHLAQN 162
Score = 89.3 bits (222), Expect = 3e-21
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
+ L+ N I I AF+ L +DL NN+++ + F+ L+ L L L+ N I
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKK-LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
+ + FE L +L+ + L+ NK+ + F L+ L+L N L +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143
Score = 72.0 bits (177), Expect = 5e-15
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 117 TSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTIN----LNLNNTYYIKDLI 167
++ I L N IK IP K + ++DLSNN IS + L + + L+
Sbjct: 32 ETITEIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS---LNSLV 86
Query: 168 LSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L N+I++L + F L ++ L L NKI+ + AF L++ L L L +N+L I
Sbjct: 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-LNLLSLYDNKLQTIAK 145
Query: 226 QCFRNLKKLKYLYLHNN 242
F L+ ++ ++L N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162
Score = 71.2 bits (175), Expect = 9e-15
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
L T+ + LE N + I F KKL+ + L NN I + + F+ L +L S+ L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
GNK+T +P F L L L N +N L
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCL 119
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 100 bits (250), Expect = 1e-24
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 141 EKLDLSNNLISTINLNL-NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
+++ ++ + +L +T L LS N + + T + +L L ++++
Sbjct: 13 LEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
+ L L LDL +N+L ++ + L L L + N + + L L
Sbjct: 70 LQ--VDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 259 KSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
+ + L GN+L +P +L L+L N L EL
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 99.0 bits (247), Expect = 3e-24
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 9/178 (5%)
Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
+ LS N + F + + +L+L ++ + ++ + L LS+NQ+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQL 89
Query: 174 SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNL 231
L + L + L + FN+++ + A GL L+ L L+ N L +
Sbjct: 90 QSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPT 147
Query: 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFI-HNKRLSHLNLGYN 288
KL+ L L NNN+ + L NL ++ L N L IP + L L N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 93.6 bits (233), Expect = 3e-22
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 141 EKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
L LS NL+ T +L L + L L +++KL L + L L N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQS 91
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257
+ L L LD+ NRLT++ R L +L+ LYL N ++ +
Sbjct: 92 L-PLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFL 290
L+ +SL+ N LT +P + L L L N L
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 70.5 bits (173), Expect = 4e-14
Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 45/209 (21%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
+N + A P +LT L + + +++ + L++ N LQ+L L +
Sbjct: 40 ENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ 97
Query: 96 TMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINL 155
T+ L LD+S N ++++ L
Sbjct: 98 TLPAL----------------------------------------TVLDVSFNRLTSLPL 117
Query: 156 NL-NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEF 213
+++L L N++ L + +L L N ++E+ NGL + L+
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDT 176
Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNN 242
L L+ N L I + F L + +LH N
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 101 bits (252), Expect = 2e-24
Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 21/233 (9%)
Query: 74 FRSILWLNMDSNLLQTLDS-----LPKTMETLSVANNYLVNYLELN---RMTSLKWIVLS 125
R+ + L L+ + +E + ++ N ++ +E + + L I +
Sbjct: 29 PRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87
Query: 126 NN----YIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYN-QISKLNAN 179
YI N +++ L +SN I + +++ ++ L + N I + N
Sbjct: 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147
Query: 180 TFRNL--NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKY 236
+F L L+L N I EIH+ AFNG E +NN L + N F
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQL-DELNLSDNNNLEELPNDVFHGASGPVI 206
Query: 237 LYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
L + I + + E+L L++ S L ++P L +L Y
Sbjct: 207 LDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVALMEASLTYPS 257
Score = 100 bits (251), Expect = 2e-24
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 13/211 (6%)
Query: 91 DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLD 144
LP+ L L + + L+ I +S N + E + N + ++
Sbjct: 26 SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 145 LSN-NLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFN-KISEIH 200
+ N + IN N ++ L++S I L + L ++ N I I
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145
Query: 201 DFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLK 259
+F GL+ L L N + I N F + + NNN+E + N+ F
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205
Query: 260 SISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
+ +S ++ +P + K+L +
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 102 bits (255), Expect = 3e-24
Identities = 52/294 (17%), Positives = 114/294 (38%), Gaps = 31/294 (10%)
Query: 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSN 85
+ + + + + N + + + ++ L+ FR + LN++
Sbjct: 26 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85
Query: 86 LLQTLD----SLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPN 136
++ +D + T++ L + N + + + L +VL N + + N
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK 195
+ L +SNN + I + T +++L LS N+++ ++ + +L F + +N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHANVSYNL 203
Query: 196 ISEIHDFAF---------------NGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLH 240
+S + +N L L L++N LT+ N L + L
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLS 262
Query: 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN-KRLSHLNLGYNFLNEL 293
N +E I + F + L+ + +S N+L + + L L+L +N L +
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316
Score = 66.9 bits (163), Expect = 2e-12
Identities = 38/213 (17%), Positives = 81/213 (38%), Gaps = 18/213 (8%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSLP 94
N++ ++ + L + N + + ++ L+ N + + +
Sbjct: 180 SNRLTHVDLSLIP-----SLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVN 231
Query: 95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIS 151
+ L + +N L + L L + LS N +++ + +E+L +SNN +
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTL 211
+NL +K L LS+N + + N + + LYL N I + + L +
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN-- 349
Query: 212 EFLDLENNRLT--NINQCFRNLKKLKYLYLHNN 242
L L +N ++ FRN+ + +
Sbjct: 350 --LTLSHNDWDCNSLRALFRNVARPAVDDADQH 380
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 98.1 bits (245), Expect = 4e-24
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNL-NNTYYIKDLILSYNQ 172
K + L +N + + L L++N + T+ + ++ L ++ N+
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRN 230
+ L F L N+ L L N++ + F+ L + L +L L N L ++ F
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDK 155
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
L LK L L+NN ++ + F+ L LK++ L N+L R+P+ F ++L L L N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 97.7 bits (244), Expect = 5e-24
Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 141 EKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
+KLDL +N +S++ + ++ L L+ N++ L A F+ L N+ L++ NK+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257
+ F+ L L L L+ N+L ++ + F +L KL YL L N ++ + F+ L +
Sbjct: 100 LPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
LK + L N+L R+P+ F L L L N L +
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 66.2 bits (162), Expect = 1e-12
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
+ + + LDL++N+L+++ ++ F L KL+ LYL++N ++ + F+ L NL+++ ++
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYNFLNEL 293
NKL +P F L+ L L N L L
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSL 124
Score = 31.5 bits (72), Expect = 0.26
Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 79/200 (39%)
Query: 53 NKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANN 105
L TL++ +N + + + ++ L +D N L++L DSL K + LS+ N
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYN 143
Query: 106 YLVNYLE--LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYI 163
L + + +++TSLK + L N
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYN------------------------------------- 166
Query: 164 KDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN 223
NQ+ ++ F L + L+ L L+NN+L
Sbjct: 167 -------NQLKRVPEGAFDKL------------------------TELKTLKLDNNQLKR 195
Query: 224 I-NQCFRNLKKLKYLYLHNN 242
+ F +L+KLK L L N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 99.4 bits (247), Expect = 2e-23
Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 14/272 (5%)
Query: 55 LTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLE 112
+ I QI + F + N+ + + +++ + N+ + +
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60
Query: 113 LNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
+ + ++ + L+ N + + + N K++ L L N I ++ +L + +K L L +N
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN 119
Query: 172 QISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
IS +N L LYL NKI++I + + L+ L LE+N++++I
Sbjct: 120 GISDINGLVHLPQLE--SLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDI-VPLAG 173
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFL 290
L KL+ LYL N+I ++ L NL + L + P H L N N
Sbjct: 174 LTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI-NHQSNLVVPNTVKNTD 230
Query: 291 NELILESSIVENEIIDQNMLFNSNAVMEDQFS 322
L+ I ++ ++ + ++ S
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262
Score = 99.4 bits (247), Expect = 3e-23
Identities = 50/272 (18%), Positives = 104/272 (38%), Gaps = 11/272 (4%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
+ + + + N SI + +++ ++++ + + L + N L +
Sbjct: 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 81
Query: 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
L + +L W+ L N IK+ + + K ++ L L +N IS IN L + ++ L L
Sbjct: 82 PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN 140
Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
N+I+ + L + L L+ N+IS+I A + L+ L L N ++++ +
Sbjct: 141 NKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSKNHISDL-RALA 194
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
LK L L L + N +LV ++ + L + N+ ++
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHL 254
Query: 290 LNELILESSIVENEIIDQNMLFNSNAVMEDQF 321
S I + + +
Sbjct: 255 PEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 93.6 bits (233), Expect = 4e-22
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 14/253 (5%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
+ G++++ I L+ + T++ + + L + +N + +
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79
Query: 112 ELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
L +T + + LS N +K I + I+ LDL++ I+ + L ++ L L
Sbjct: 80 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDL 138
Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
NQI+ ++ L N+ L + ++S++ A S L L ++N++++I
Sbjct: 139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTPLAN---LSKLTTLKADDNKISDI-SPLA 192
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
+L L ++L NN I + + NL ++L+ +T P F +N L N+
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNN-LVVPNVVKGP 249
Query: 290 LNELILESSIVEN 302
I ++I +N
Sbjct: 250 SGAPIAPATISDN 262
Score = 83.2 bits (206), Expect = 2e-18
Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 11/245 (4%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNY 110
+ +TTL + IE + +++ L + N + L L + L ++ N L N
Sbjct: 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV 100
Query: 111 LELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
+ + S+K + L++ I + + +++ L L N I+ I+ L ++ L +
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIG 159
Query: 170 YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
Q+S L NL + L NKIS+I A L + L+NN+++++
Sbjct: 160 NAQVSDLTP--LANLSKLTTLKADDNKISDISPLA---SLPNLIEVHLKNNQISDV-SPL 213
Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
N L + L N I +LV + N + NL +N
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273
Query: 289 FLNEL 293
+ +
Sbjct: 274 LTSFI 278
Score = 70.5 bits (173), Expect = 4e-14
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 11/173 (6%)
Query: 123 VLSNNYIKE-FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-NT 180
+ I F P + K+ + ++ + I L ++ +
Sbjct: 3 ITQPTAINVIFPDPALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEGVQY 61
Query: 181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLH 240
NL L LK N+I+++ + + L+L N L N++ L+ +K L L
Sbjct: 62 LNNLI--GLELKDNQITDLAPLKN---LTKITELELSGNPLKNVSA-IAGLQSIKTLDLT 115
Query: 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ I + L NL+ + L N++T I L +L++G +++L
Sbjct: 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL 166
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 95.1 bits (237), Expect = 7e-22
Identities = 51/270 (18%), Positives = 93/270 (34%), Gaps = 34/270 (12%)
Query: 54 KLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYL 111
LT + + L + +N+ N + + L + L+
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA---------- 299
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
+ ++ I + N +K F + K + L+ N + + + L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359
Query: 168 LSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ 226
L+YNQI+++ AN V L NK+ I + S + +D N + +++
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419
Query: 227 C--------FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD----- 273
+ + L NN I F L SI+L GN LT IP
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479
Query: 274 ----FIHNKRLSHLNLGYNFLNELILESSI 299
F + L+ ++L +N L +L +
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509
Score = 94.0 bits (234), Expect = 2e-21
Identities = 49/294 (16%), Positives = 101/294 (34%), Gaps = 34/294 (11%)
Query: 54 KLTTLFIGENHIH-QIENLNGFRSILWLNMDSNLLQTLD----SLPKTMETLSVANNYL- 107
KL L N + ++ + LN+ N + + + +E LS A+N L
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390
Query: 108 --VNYLELNRMTSLKWIVLSNNYIKEFV----------IPNRKHIEKLDLSNNLIST-IN 154
N + ++ + I S N I ++ ++LSNN IS
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450
Query: 155 LNLNNTYYIKDLILSYNQISKLNANTFRNL--------NVFRLYLKFNKISEIHDFAFNG 206
+ + + L N ++++ N+ ++ + + L+FNK++++ D
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510
Query: 207 LNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHN------NNIEFIQNNTFEHLVNLKS 260
L +DL N + N LK + N N +L
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 261 ISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314
+ + N + ++ + I +S L++ N + L E + ++
Sbjct: 571 LQIGSNDIRKVNEKITPN-ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
Score = 79.3 bits (196), Expect = 1e-16
Identities = 37/290 (12%), Positives = 90/290 (31%), Gaps = 25/290 (8%)
Query: 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNL 86
M + + ++S I++ + + ++ + SN
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ---QKSIKKSSRITLKDTQIGQLSNN 194
Query: 87 LQTLDSLPKTM------ETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHI 140
+ + K + + N+ V + ++ N K +
Sbjct: 195 IT---FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251
Query: 141 EKLDLS-NNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF---------RLY 190
+++ ++ + L ++ + ++ N+ + +Y
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250
+ +N + L L+ N+L F + KL L L N I I N
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371
Query: 251 TFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHL---NLGYNFLNELILES 297
++++S + NKL IP+ K +S + + YN + + ++
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Score = 68.9 bits (169), Expect = 4e-13
Identities = 33/264 (12%), Positives = 83/264 (31%), Gaps = 32/264 (12%)
Query: 48 SPEIQN--KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN 105
I +L L +G + E L G + I D + KT
Sbjct: 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT--------- 148
Query: 106 YLVNYLELNRMTSLKWIVLSNNYIKEFVIP---NRKHIEKLDLSNNLISTINLNLNNTYY 162
V+Y + L ++++ ++ + ++ +N I+ ++ +
Sbjct: 149 -FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK 207
Query: 163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDL-ENNRL 221
++ + + N ++ + + D ++ L L +++ L
Sbjct: 208 LRQFYMGNSPFVAENICEAWEN----ENSEYAQQYKTEDLKWDNLKD-LTDVEVYNCPNL 262
Query: 222 TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEH--------LVNLKSISLSGNKLTR--I 271
T + + L +++ + + N + + ++ I + N L +
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322
Query: 272 PDFIHN-KRLSHLNLGYNFLNELI 294
+ K+L L YN L +
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKL 346
Score = 66.6 bits (163), Expect = 2e-12
Identities = 39/255 (15%), Positives = 84/255 (32%), Gaps = 37/255 (14%)
Query: 53 NKLTTLFIGENHIHQI---ENLNGFRSILWLNMDSNLLQTLD-----SLPKT------ME 98
++ L N + I + + ++ N + ++D L T +
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436
Query: 99 TLSVANNYLVN--YLELNRMTSLKWIVLSNNYIKEF----------VIPNRKHIEKLDLS 146
+++++NN + + + L I L N + E N + +DL
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496
Query: 147 NNLISTI--NLNLNNTYYIKDLILSYNQISKL-----NANTFRNLNVFR-LYLKFNKISE 198
N ++ + + Y+ + LSYN SK N++T + + + N+
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
S L L + +N + +N+ + L + +N I + +
Sbjct: 557 EWPEGITLCPS-LTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613
Query: 259 KSISLSGNKLTRIPD 273
L +K I
Sbjct: 614 GMYMLFYDKTQDIRG 628
Score = 59.7 bits (145), Expect = 4e-10
Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 37/228 (16%)
Query: 98 ETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINL 155
LS+ + + ++T L+ + L ++ K + + + +S
Sbjct: 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-----VNERLFGPKGISANMSDEQK 138
Query: 156 NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLD 215
+ + F +L + + S + +
Sbjct: 139 QKMR------MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS---RITLKDTQIG 189
Query: 216 LENNRLTNINQCFRNLKKLKYLYLHNNNI------EFIQNNTFEHLVNLKSISLSGNKLT 269
+N +T +++ L KL+ Y+ N+ E +N E+ K+ L + L
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249
Query: 270 R--------------IPDFIHN-KRLSHLNLGYNFLNELILESSIVEN 302
+P F+ + +N+ N +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Score = 55.8 bits (135), Expect = 7e-09
Identities = 29/213 (13%), Positives = 66/213 (30%), Gaps = 29/213 (13%)
Query: 54 KLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYL 111
++++ + N I + E + + +N+ N+L + N+
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP-----------KNSLKDENE 482
Query: 112 ELNRMTSLKWIVLSNNYI----KEFVIPNRKHIEKLDLSNNLISTI-----NL-NLNNTY 161
L I L N + +F ++ +DLS N S N L
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542
Query: 162 YIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
N+ + ++ +L + N I ++ + + LD+++N
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV----NEKITPNISVLDIKDNP 598
Query: 221 LTNIN-QCFRNLKKLKYLYLHNNNIEFIQNNTF 252
+I+ + L + + I+
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631
Score = 40.8 bits (96), Expect = 4e-04
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 208 NSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEF---------IQNNTFEHLVN 257
N + L LE + + L +L+ L L ++ + I N +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 258 LKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSI 299
+ + P R +L + +N + SI
Sbjct: 140 KMRMHYQKTFVDYDP------REDFSDLIKDCINSDPQQKSI 175
Score = 39.6 bits (93), Expect = 0.001
Identities = 23/169 (13%), Positives = 62/169 (36%), Gaps = 20/169 (11%)
Query: 36 DNQIAELETANWSPEIQN-----KLTTLFIGENHIHQIEN---LNGFRSILWLNMDSNLL 87
N + E+ + E +N LT++ + N + ++ + ++ +++ N
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525
Query: 88 QTLDSLP---KTMETLSVANNYLVNY--------LELNRMTSLKWIVLSNNYIKEFVIPN 136
+ P T++ + N + SL + + +N I++
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585
Query: 137 RKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL 184
+I LD+ +N +I+L+ + +L Y++ + ++
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634
Score = 35.4 bits (82), Expect = 0.027
Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 6/91 (6%)
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFI------HNKRLSHL 283
+ ++ L L + L L+ ++L + N
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 284 NLGYNFLNELILESSIVENEIIDQNMLFNSN 314
+ ++ E+ NS+
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 93.3 bits (232), Expect = 2e-21
Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 30/222 (13%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYL 111
K+ + + + + + +S+ +L++ NL+ YL N
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE---------------YLKNSA 355
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNR-----KHIEKLDLSNNLISTINLNLNNTYYIKDL 166
SL+ +VLS N+++ K++ LD+S N + + ++ L
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415
Query: 167 ILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ 226
LS I + + L V L + N + F L+ L + N+L +
Sbjct: 416 NLSSTGIRVVKTCIPQTLEV--LDVSNNNLDSFSLFLPR-----LQELYISRNKLKTLPD 468
Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
L + + N ++ + + F+ L +L+ I L N
Sbjct: 469 AS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 92.9 bits (231), Expect = 4e-21
Identities = 38/285 (13%), Positives = 99/285 (34%), Gaps = 28/285 (9%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
D +A + + + + + E+ N +L ++ + ++ D
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264
Query: 96 TMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLIST 152
+ + + + +V+ L +++ + + Y+ V + ++++ + N+ +
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324
Query: 153 INLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVF----RLYLKFNKISEIHD--FAFN 205
+ + + ++ L LS N + + + L L N + +
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 206 GLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF------------- 252
L + L LD+ N + + +K+++L L + I ++
Sbjct: 385 TLKN-LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443
Query: 253 ----EHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
L L+ + +S NKL +PD L + + N L +
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV 488
Score = 87.1 bits (216), Expect = 3e-19
Identities = 51/240 (21%), Positives = 101/240 (42%), Gaps = 12/240 (5%)
Query: 91 DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDL 145
L M++L ++ N + + + +L +L+ ++L ++ I + +E LDL
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 146 SNNLISTINLN-LNNTYYIKDLILSYNQISKLNAN-TFRNL-NVFRLYL-KFNKISEIHD 201
S+N +S+++ + +K L L N L F NL N+ L + SEI
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 202 FAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
F GL S L L+++ L N +Q ++++ + +L LH + F+ + L +++
Sbjct: 142 IDFAGLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 261 ISLSGNKLTRIPDFIHNKRLSHLNL-GYNFLNELILESSIVENEIIDQNMLFNSNAVMED 319
+ L L R + F ++ + S E + + +L S +D
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260
Score = 87.1 bits (216), Expect = 3e-19
Identities = 50/284 (17%), Positives = 108/284 (38%), Gaps = 35/284 (12%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP-----KTMETLSVANNY 106
L L + +NH+ + + S+ +LN+ N QTL ++TL + N
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 107 LVNYLE---LNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTI-NLNLNN 159
+ + +TSL + + ++ + + + + I L L + + + + +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Query: 160 TYYIKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGL---------NS 209
++ L L +++ + V + + S + D +FN L S
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 210 TLEFLDLENNRLTNINQ---------CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
+EF D N L + N ++ L++ + + + + L +K
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314
Query: 261 ISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNELILESSIVEN 302
I++ +K+ +P H K L L+L N + E L++S +
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358
Score = 84.8 bits (210), Expect = 2e-18
Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Query: 76 SILWLNMDSNLLQTLD----SLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYI 129
+I L++ L SL + ++ ++V N+ + V + SL+++ LS N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
Query: 130 KEFVIPNR------KHIEKLDLSNNLISTIN------LNLNNTYYIKDLILSYNQISKLN 177
E + N ++ L LS N + ++ L L N + L +S N +
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN---LTSLDISRNTFHPMP 403
Query: 178 ANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYL 237
+ + L L I + + TLE LD+ NN L + L +L+ L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVV----KTCIPQTLEVLDVSNNNLDSF---SLFLPRLQEL 456
Query: 238 YLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
Y+ N ++ + + + L + +S N+L +PD F L + L N
Sbjct: 457 YISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 78.2 bits (193), Expect = 3e-16
Identities = 36/270 (13%), Positives = 88/270 (32%), Gaps = 29/270 (10%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
+ + +L + N I I + L ++ L + S+ + T++
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA------------ 69
Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN--LNNTY 161
+ SL+ + LS+N++ ++ L+L N T+ + N
Sbjct: 70 ------FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123
Query: 162 YIKDLILS-YNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENN 219
++ L + S++ F L ++ L +K + + + + L L +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLS 182
Query: 220 RLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK 278
+ L ++YL L + N+ Q + + + + + D N+
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242
Query: 279 RLSHLNLGYNFLNELILESSIVENEIIDQN 308
L L + ++ + +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPS 272
Score = 77.1 bits (190), Expect = 7e-16
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 7/136 (5%)
Query: 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQ 226
+ + + + L L FNKI+ I + L+ L L+++R+ I
Sbjct: 12 GRSRSFTSIPSGLTAAMKS--LDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGD 68
Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD---FIHNKRLSHL 283
F +L L++L L +N++ + ++ F L +LK ++L GN + F + L L
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 284 NLGYNFLNELILESSI 299
+G I
Sbjct: 129 RIGNVETFSEIRRIDF 144
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 90.5 bits (225), Expect = 4e-21
Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 11/244 (4%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
+ + + + N SI + +++ ++++ + + L + N L +
Sbjct: 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 84
Query: 112 ELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
L + +L W+ L N +K+ + + K ++ L L +N IS IN L + ++ L L
Sbjct: 85 PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN 143
Query: 171 NQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
N+I+ + L + L L+ N+IS+I A + L+ L L N ++++ +
Sbjct: 144 NKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSKNHISDL-RALA 197
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
LK L L L + N +LV ++ + L + N+ ++
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHL 257
Query: 290 LNEL 293
Sbjct: 258 PEFT 261
Score = 81.6 bits (202), Expect = 5e-18
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 31/243 (12%)
Query: 56 TTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNR 115
+ I QI + + F + N+ + + N
Sbjct: 5 SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--------------------NE 44
Query: 116 MTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQIS 174
+ S+ I+ +N+ IK I ++ KL L+ N ++ I L N + L L N++
Sbjct: 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVK 103
Query: 175 KLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKK 233
L++ ++L + L L+ N IS+I+ LE L L NN++T+I L K
Sbjct: 104 DLSS--LKDLKKLKSLSLEHNGISDINGLVHL---PQLESLYLGNNKITDI-TVLSRLTK 157
Query: 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
L L L +N I I L L+++ LS N ++ + K L L L
Sbjct: 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 215
Query: 294 ILE 296
+
Sbjct: 216 PIN 218
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 90.8 bits (226), Expect = 1e-20
Identities = 53/245 (21%), Positives = 107/245 (43%), Gaps = 19/245 (7%)
Query: 49 PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
++ L L + N + ++ L + +++D+N L+ L LP ++E ++ NN L
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 186
Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
EL + L I NN +K+ +E + NN++ + L N ++ +
Sbjct: 187 ELPELQNLPFLTAIYADNNSLKKL-PDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYA 244
Query: 169 SYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
N + L + +L L ++ N ++++ + L +L FLD+ N + +++
Sbjct: 245 DNNLLKTLP-DLPPSLE--ALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSGLSEL- 295
Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
L YL +N I + + +L+ +++S NKL +P L L +N
Sbjct: 296 --PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELPALPPR--LERLIASFN 347
Query: 289 FLNEL 293
L E+
Sbjct: 348 HLAEV 352
Score = 85.0 bits (211), Expect = 1e-18
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 21/242 (8%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL 113
L + G N + ++ L + + D+N L+ L LP ++E++ NN L EL
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 233
Query: 114 NRMTSLKWIVLSNNYIKEFVIPNR-KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
+ L I NN +K +P+ +E L++ +N ++ + + + L +S N
Sbjct: 234 QNLPFLTTIYADNNLLKT--LPDLPPSLEALNVRDNYLTDLPELPQS---LTFLDVSENI 288
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
S L + N++ L N+I + D L +LE L++ NN+L +
Sbjct: 289 FSGL---SELPPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNNKLIEL---PALPP 337
Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE 292
+L+ L N++ + E NLK + + N L PD + +N + E
Sbjct: 338 RLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 293 LI 294
L
Sbjct: 394 LP 395
Score = 78.5 bits (194), Expect = 2e-16
Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 32/259 (12%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
+N + +L P++ L ++ G N + ++ L + + D+NLL+TL LP
Sbjct: 204 NNSLKKL------PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP 257
Query: 96 TMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNR-KHIEKLDLSNNLISTIN 154
++E L+V +NYL + EL SL ++ +S N + ++ L+ S+N I ++
Sbjct: 258 SLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG--LSELPPNLYYLNASSNEIRSLC 313
Query: 155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214
+ +++L +S N++ +L A L RL FN ++E+ + L L+ L
Sbjct: 314 DLPPS---LEELNVSNNKLIELPA-LPPRLE--RLIASFNHLAEVPE-----LPQNLKQL 362
Query: 215 DLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDF 274
+E N L +++ L+ N+++ + E NLK + + N L PD
Sbjct: 363 HVEYNPLREFPDIPESVEDLR----MNSHLAEV----PELPQNLKQLHVETNPLREFPDI 414
Query: 275 IHNKRLSHLNLGYNFLNEL 293
+ + L + + +
Sbjct: 415 PES--VEDLRMNSERVVDP 431
Score = 75.0 bits (185), Expect = 3e-15
Identities = 36/205 (17%), Positives = 81/205 (39%), Gaps = 16/205 (7%)
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNL 149
L +P E + Y + E R + + +L+L+N
Sbjct: 23 LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82
Query: 150 ISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS 209
+S++ + ++ L+ S N +++L ++ +S+ L
Sbjct: 83 LSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD--------LPP 131
Query: 210 TLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269
LE+L + NN+L + + +N LK + + NN+++ + + +L+ I+ N+L
Sbjct: 132 LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLE 186
Query: 270 RIPDFIHNKRLSHLNLGYNFLNELI 294
+P+ + L+ + N L +L
Sbjct: 187 ELPELQNLPFLTAIYADNNSLKKLP 211
Score = 62.7 bits (153), Expect = 4e-11
Identities = 40/221 (18%), Positives = 90/221 (40%), Gaps = 20/221 (9%)
Query: 49 PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
P++ L L + +N++ + L +S+ +L++ N+ L LP + L+ ++N +
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310
Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
+ +L SL+ + +SNN + E +E+L S N ++ + N +K L +
Sbjct: 311 SLCDL--PPSLEELNVSNNKLIELP-ALPPRLERLIASFNHLAEVPELPQN---LKQLHV 364
Query: 169 SYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCF 228
YN + + + ++ R+ ++ E L L+ L +E N L
Sbjct: 365 EYNPLREF-PDIPESVEDLRMNSHLAEVPE--------LPQNLKQLHVETNPLREFPDI- 414
Query: 229 RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269
+ ++ L +++ + E L+ +
Sbjct: 415 --PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 51.5 bits (124), Expect = 1e-07
Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
DN + +L PE+ LT L + EN + L ++ +LN SN +++L LP
Sbjct: 266 DNYLTDL------PELPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDLPP 317
Query: 96 TMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI-- 153
++E L+V+NN L+ L L+ ++ S N++ E V +++++L + N +
Sbjct: 318 SLEELNVSNNKLIELPAL--PPRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPD 374
Query: 154 ------NLNLNNTYY--------IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI 199
+L +N+ +K L + N + + +V L + ++ +
Sbjct: 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDP 431
Query: 200 HDFAFNGLNSTLEFLDLENNRLTN 223
++FA + LE E++ +
Sbjct: 432 YEFAHETTDK-LEDDVFEHHHHHH 454
Score = 40.7 bits (96), Expect = 4e-04
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 205 NGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV-------- 256
N N+ L+ ++ LT + N+K Y + E
Sbjct: 7 NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 257 -----NLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ L+ L+ +P+ + L L N L EL
Sbjct: 67 DCLDRQAHELELNNLGLSSLPELPPH--LESLVASCNSLTEL 106
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 90.7 bits (225), Expect = 2e-20
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 53 NKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNY- 110
N L +GE+ + + + L I L + N L +L +LP + TL V+ N L +
Sbjct: 40 NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLP 97
Query: 111 LELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSY 170
+ + L ++ + KL + N ++++ + +++L +S
Sbjct: 98 VLPPGLLELSIFSNPLTHLPALP----SGLCKLWIFGNQLTSLPVLPPG---LQELSVSD 150
Query: 171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
NQ++ L A L +L+ N+++ + L S L+ L + +N+L ++
Sbjct: 151 NQLASLPAL-PSELC--KLWAYNNQLTSL-----PMLPSGLQELSVSDNQLASLPTLPSE 202
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFL 290
L K L+ +NN + + LK + +SGN+LT +P L L + N L
Sbjct: 203 LYK---LWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVLPSE--LKELMVSGNRL 253
Query: 291 NEL 293
L
Sbjct: 254 TSL 256
Score = 81.1 bits (200), Expect = 4e-17
Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 21/246 (8%)
Query: 49 PEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLV 108
P + + L L+I N + + L + L++ N L +L +LP + L NN L
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT 174
Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNR-KHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
+ L + L+ + +S+N + +P + KL NN ++++ + +K+LI
Sbjct: 175 SLPML--PSGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLTSLPALPSG---LKELI 227
Query: 168 LSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC 227
+S N+++ L L L + N+++ + L S L L + N+LT + +
Sbjct: 228 VSGNRLTSLPV-LPSELK--ELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLPES 279
Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
+L + L N + T + L + S + R + L
Sbjct: 280 LIHLSSETTVNLEGNPLSER---TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336
Query: 288 NFLNEL 293
+ L
Sbjct: 337 AAADWL 342
Score = 47.6 bits (113), Expect = 4e-06
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPK 95
+N++ L P + + L L + N + + L + L + N L +L LP
Sbjct: 210 NNRLTSL------PALPSGLKELIVSGNRLTSLPVLPS--ELKELMVSGNRLTSLPMLPS 261
Query: 96 TMETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTI 153
+ +LSV N L L L ++S + L N + E + + I + I
Sbjct: 262 GLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320
Query: 154 NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRL 189
++ + + + A R
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 86.2 bits (214), Expect = 6e-20
Identities = 43/213 (20%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNL-LQTL-----DSLPKTMETL 100
P + TL + E H+ I + + +I + + ++ LQ L +L K + +
Sbjct: 27 PSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHI 85
Query: 101 SVANNYLVNYLE---LNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLS-NNLIST 152
+ N + Y++ L + LK++ + N +K F + + L+++ N +++
Sbjct: 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145
Query: 153 INLNL--NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK-ISEIHDFAFNGLNS 209
I +N L L N + + F + +YL NK ++ I AF G+ S
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205
Query: 210 TLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHN 241
LD+ +T + ++ +LK+L
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
Score = 85.8 bits (213), Expect = 8e-20
Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 15/221 (6%)
Query: 80 LNMDSNLLQTLDSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNN----YIKEFV 133
+ +Q + SLP + +TL + +L + + + ++ I +S + ++
Sbjct: 16 FRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75
Query: 134 IPNRKHIEKLDLSNN-LISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYL 191
N + +++ N ++ I+ + L +K L + + T L
Sbjct: 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL 135
Query: 192 KF---NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNN-IEFI 247
+ ++ I AF GL + L L NN T++ N KL +YL+ N + I
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195
Query: 248 QNNTFEHLVN-LKSISLSGNKLTRIPD--FIHNKRLSHLNL 285
+ F + + + +S +T +P H K L N
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 77.0 bits (190), Expect = 1e-16
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDL-ENNRLTNI-NQCFRNLKKLKYLYLHNNN-I 244
L L + I AF+ L + + + + + L + + F NL K+ ++ + N +
Sbjct: 35 TLKLIETHLRTIPSHAFSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93
Query: 245 EFIQNNTFEHLVNLKSISLSGNKLTRIPDFI---HNKRLSHLNLGYNFLNELI 294
+I + + L LK + + L PD L + N I
Sbjct: 94 TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 84.4 bits (209), Expect = 3e-19
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 164 KDLILSYNQISKLNANTFRNLNVFR-LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
+ L L ++ L+ TFR L L L +N++ + F+ L + L L L NN+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-TELGTLGLANNQLA 96
Query: 223 NI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--R 279
++ F +L +L LYL N ++ + + F+ L LK + L+ N+L IP +K
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 280 LSHLNLGYNFL 290
L L+L N L
Sbjct: 157 LQTLSLSTNQL 167
Score = 82.8 bits (205), Expect = 1e-18
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 141 EKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
EKLDL + ++T++ + L L YNQ+ L+A F +L + L L N+++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVN 257
+ F+ L + L+ L L N+L ++ + F L KLK L L+ N ++ I F+ L N
Sbjct: 98 LPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 258 LKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
L+++SLS N+L +P F +L + L N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 29.7 bits (67), Expect = 1.2
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSIL---WLNMDSNLLQTL-----DSLPKTMETLSVANN 105
+L L++G N + + + F + L +++N LQ++ D L ++TLS++ N
Sbjct: 108 QLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN-LQTLSLSTN 165
Query: 106 YL--VNYLELNRMTSLKWIVLSNN 127
L V + +R+ L+ I L N
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGN 189
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 84.6 bits (209), Expect = 2e-18
Identities = 44/274 (16%), Positives = 93/274 (33%), Gaps = 21/274 (7%)
Query: 28 LLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLL 87
+ EN + ++ L+ N+ + L + ++ + + N I L + N L
Sbjct: 39 QALPGENRNEAVSLLKECLI-----NQFSELQLNRLNLSSLPD-NLPPQITVLEITQNAL 92
Query: 88 QTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF--VIPNRKHIEKLDL 145
+L LP ++E L +N L EL SLK + + NN + + +E ++
Sbjct: 93 ISLPELPASLEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPELPAL---LEYINA 147
Query: 146 SNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFN 205
NN ++ + + ++ L + NQ++ L +L L + N + +
Sbjct: 148 DNNQLTMLPELPTS---LEVLSVRNNQLTFL-PELPESLE--ALDVSTNLLESLPAVPVR 201
Query: 206 --GLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
T F NR+T+I + +L + L +N + +
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261
Query: 264 SGNKLTRIPDFIHNKRLSHLNLGYNFLNELILES 297
+ + + + E
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSD 295
Score = 30.3 bits (68), Expect = 0.97
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSG---NKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
N I + F + +L G N+ + + S L L L+ L
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 84.0 bits (208), Expect = 3e-18
Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 15/241 (6%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLD-SLPKTMETLSVANNYLVNYLE 112
KLT L N + ++ +++ + +LN N L +D S + L N + L+
Sbjct: 107 KLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD 165
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
+ T L + S N I E + K + +L+ N I+ ++LN N + L S N+
Sbjct: 166 VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNI--QLTFLDCSSNK 223
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
+++++ L N ++E+ S L L L I+ +
Sbjct: 224 LTEIDVTPLTQLTY--FDCSVNPLTELDV----STLSKLTTLHCIQTDLLEID--LTHNT 275
Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE 292
+L Y I+ H L + +T + D N +L +L L L E
Sbjct: 276 QLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTE 332
Query: 293 L 293
L
Sbjct: 333 L 333
Score = 84.0 bits (208), Expect = 3e-18
Identities = 51/242 (21%), Positives = 96/242 (39%), Gaps = 15/242 (6%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLD-SLPKTMETLSVANNYLVNYL 111
LT+L + I + + + L SN + TLD S + L+ +N L N L
Sbjct: 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-L 100
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
++ +T L ++ N + + + + L+ + N ++ I+++ N + +L N
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNT--QLTELDCHLN 158
Query: 172 QISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNL 231
+ T + L FNKI+E+ N L L+ + N +T ++
Sbjct: 159 KKITKLDVT-PQTQLTTLDCSFNKITELDV----SQNKLLNRLNCDTNNITKLD--LNQN 211
Query: 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLN 291
+L +L +N + I L L S N LT + +L+ L+ L
Sbjct: 212 IQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLL 267
Query: 292 EL 293
E+
Sbjct: 268 EI 269
Score = 77.8 bits (192), Expect = 4e-16
Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 29/243 (11%)
Query: 74 FRSILWLNMDSNLLQTLD-SLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF 132
F S + + T+ T+ +L N+ + + + ++T L ++ ++N I
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79
Query: 133 VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLK 192
+ ++ L +N ++ +++ + L N+++KL+ + L L
Sbjct: 80 DLSQNTNLTYLACDSNKLTNLDVTPLTK--LTYLNCDTNKLTKLDVSQNPLLTY--LNCA 135
Query: 193 FNKISEIHDFAFNGL------------------NSTLEFLDLENNRLTNINQCFRNLKKL 234
N ++EI L + L LD N++T ++ K L
Sbjct: 136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLL 193
Query: 235 KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELI 294
L NNI + + L + S NKLT I D +L++ + N L EL
Sbjct: 194 NRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELD 249
Query: 295 LES 297
+ +
Sbjct: 250 VST 252
Score = 54.7 bits (132), Expect = 2e-08
Identities = 26/213 (12%), Positives = 65/213 (30%), Gaps = 7/213 (3%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLD-SLPKTMETLSVANNYLVNYLE 112
+LT N + ++ +++ + L+ L +D + + + L+
Sbjct: 234 QLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
+ T L + I E + + L L+N ++ ++++ N +K L
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTK--LKSLSCVNAH 350
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
I ++ + + + + + T+ ++ N
Sbjct: 351 IQDFSSVGK-IPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI--EPG 407
Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG 265
N I + +T V S +G
Sbjct: 408 DGGVYDQATNTITWENLSTDNPAVTYTFTSENG 440
Score = 53.5 bits (129), Expect = 3e-08
Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 13/163 (7%)
Query: 133 VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-NTFRNLNVFRLYL 191
P+ ++ + + +T ++ + L + I+ + L +L
Sbjct: 14 WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLT--KLIC 71
Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNT 251
N I+ + N+ L +L ++N+LTN++ L KL YL N + +
Sbjct: 72 TSNNITTLDL----SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL---D 122
Query: 252 FEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELI 294
L ++ + N LT I D HN +L+ L+ N +
Sbjct: 123 VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL 164
Score = 36.2 bits (84), Expect = 0.013
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 216 LENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFI 275
L+ + + N F + ++ + E L L S+ + +T +
Sbjct: 3 LKAGQTQSFNDWFPD-DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE 61
Query: 276 HNKRLSHLNLGYNFLNEL 293
L+ L N + L
Sbjct: 62 KLTGLTKLICTSNNITTL 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 81.2 bits (201), Expect = 6e-18
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 11/202 (5%)
Query: 94 PKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLIST 152
++ + + + N + S+ I+ +N+ IK I ++ L L N +
Sbjct: 18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD 77
Query: 153 INL--NLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNS 209
I+ L N LIL+ NQ+ L F L N+ L L N++ + D F+ L +
Sbjct: 78 ISALKELTNL---TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-T 133
Query: 210 TLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
L +L+L +N+L ++ F L L L L N ++ + F+ L LK + L N+L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 269 TRIPD--FIHNKRLSHLNLGYN 288
+PD F L ++ L N
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDN 215
Score = 45.4 bits (108), Expect = 8e-06
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
+L+ +T+ L + + +N++I+ +Q ++L N++ ++L GNKL I
Sbjct: 24 ANLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDISA 80
Query: 274 FIHNKRLSHLNLGYNFLNEL 293
L++L L N L L
Sbjct: 81 LKELTNLTYLILTGNQLQSL 100
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 77.7 bits (192), Expect = 3e-17
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
LYL N+ + + + L +DL NNR++ + NQ F N+ +L L L N +
Sbjct: 35 ELYLDGNQFTLVPK-ELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
I TF+ L +L+ +SL GN ++ +P+ F LSHL +G N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 71.2 bits (175), Expect = 7e-15
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEI 199
+L L N + + L+N ++ + LS N+IS L+ +F N+ + L L +N++ I
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 200 HDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNN 242
F+GL S L L L N ++ + F +L L +L + N
Sbjct: 94 PPRTFDGLKS-LRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 67.3 bits (165), Expect = 2e-13
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 206 GLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG 265
G+ + L L+ N+ T + + N K L + L NN I + N +F ++ L ++ LS
Sbjct: 28 GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 266 NKLTRIPDFIHNK--RLSHLNLGYN 288
N+L IP + L L+L N
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGN 112
Score = 29.6 bits (67), Expect = 0.93
Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 56 TTLFIGENHIHQIEN-LNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYLVN 109
T L++ N + L+ ++ + +++ +N + TL ++ + + TL ++ N L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ-LLTLILSYNRLRC 92
Query: 110 YLE--LNRMTSLKWIVLSNNYIKEFVIP-----NRKHIEKLDLSNN 148
+ + SL+ + L N I +P + + L + N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGAN 136
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 75.6 bits (187), Expect = 1e-16
Identities = 22/158 (13%), Positives = 46/158 (29%), Gaps = 6/158 (3%)
Query: 138 KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKI 196
KL ++ + + L Y ++++L A L +L + ++
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL 62
Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV 256
+ + A L L LT + L + L + + L
Sbjct: 63 TRLKA-AVGELPE-KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL-KAAVGELP 119
Query: 257 NLKSISLSGNKLTRIPDFIHN-KRLSHLNLGYNFLNEL 293
+ +LT++ + S Y L +L
Sbjct: 120 EKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDL 157
Score = 69.4 bits (171), Expect = 1e-14
Identities = 18/166 (10%), Positives = 43/166 (25%), Gaps = 7/166 (4%)
Query: 115 RMTSLKWIVLSNNYIKEF--VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
+ + + + KL ++ + + L Y +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 173 ISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNL 231
+++L A L +L + +++ + A L L LT + L
Sbjct: 62 LTRLKA-AVGELPEKSKLQEIYQELTRLKA-AVGELPE-KSKLQEIYQELTELKAAVGEL 118
Query: 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN 277
+ L + + L + +LT +
Sbjct: 119 PEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQELTDLKTAFER 163
Score = 55.2 bits (134), Expect = 2e-09
Identities = 14/138 (10%), Positives = 36/138 (26%), Gaps = 4/138 (2%)
Query: 112 ELNRMTSLKWIVLSNNYIKEF--VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
+ + + + + KL ++ + + L
Sbjct: 22 AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEI 81
Query: 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
Y ++++L A +L + +++E+ A L L LT +
Sbjct: 82 YQELTRLKAAVGELPEKSKLQEIYQELTELKA-AVGELPE-KSKLQEIYQELTQLKAAVG 139
Query: 230 NLKKLKYLYLHNNNIEFI 247
L + +
Sbjct: 140 ELPDQSKQQQIYQELTDL 157
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 76.6 bits (189), Expect = 2e-16
Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 12/235 (5%)
Query: 63 NHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLELNRMTSLK 120
I+Q+ G + + N+ + L S ++ + N+ + + + T+LK
Sbjct: 7 TPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLK 66
Query: 121 WIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA- 178
+ LS+N I + + + +E+L ++ N + +N + + L L N++ ++
Sbjct: 67 ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDNNELRDTDSL 124
Query: 179 NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLY 238
+NL + L ++ NK+ I F S LE LDL N +TN LKK+ ++
Sbjct: 125 IHLKNLEI--LSIRNNKLKSIVMLGFL---SKLEVLDLHGNEITNTGG-LTRLKKVNWID 178
Query: 239 LHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
L L ++ + + + +
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233
Score = 71.2 bits (175), Expect = 2e-14
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 123 VLSNNYIKE-FVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL-NANT 180
+ I + F P + K +L ++ + + +++ + I L
Sbjct: 3 IQRPTPINQVFPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQF 61
Query: 181 FRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLH 240
F NL L+L N+IS++ + LE L + NRL N+N L L+L
Sbjct: 62 FTNLKE--LHLSHNQISDLSPLKDL---TKLEELSVNRNRLKNLNGI--PSACLSRLFLD 114
Query: 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
NN + + HL NL+ +S+ NKL I +L L+L N +
Sbjct: 115 NNELRDTDS--LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165
Score = 71.2 bits (175), Expect = 2e-14
Identities = 30/224 (13%), Positives = 81/224 (36%), Gaps = 12/224 (5%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL--PKTMETLSVANNYLVNYL 111
+G+ + + + + N D++ +Q+L + ++ L +++N + +
Sbjct: 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS 79
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
L +T L+ + ++ N +K + +L L NN + + +L + ++ L + N
Sbjct: 80 PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN 138
Query: 172 QISKLNA-NTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
++ + L V L L N+I+ + ++DL + N
Sbjct: 139 KLKSIVMLGFLSKLEV--LDLHGNEITNTGGLTR---LKKVNWIDLTGQKCVNEPVK--Y 191
Query: 231 LKKLKYL-YLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
+L + + + +I + + + +
Sbjct: 192 QPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 75.0 bits (185), Expect = 2e-16
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 188 RLYLKFNKISEIHDFA-FNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIE 245
L L N++ I F L L L+L+ N+LT I F ++ L L N I+
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 246 FIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
I N F L LK+++L N+++ + F H L+ LNL N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 66.2 bits (162), Expect = 3e-13
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 141 EKLDLSNNLISTINLN--LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS 197
+L L++N + I+ + ++ L L NQ++ + N F ++ L L NKI
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 198 EIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNN 242
EI + F GL+ L+ L+L +N+++ + F +L L L L +N
Sbjct: 92 EISNKMFLGLHQ-LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 63.1 bits (154), Expect = 4e-12
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 206 GLNSTLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
+ L L +N L I + F L L L L N + I+ N FE +++ + L
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85
Query: 264 SGNKLTRIPD--FIHNKRLSHLNLGYN 288
NK+ I + F+ +L LNL N
Sbjct: 86 GENKIKEISNKMFLGLHQLKTLNLYDN 112
Score = 28.0 bits (63), Expect = 3.4
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 35 EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL-- 90
DN++ + + + + L L + N + IE G I L + N ++ +
Sbjct: 37 NDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 91 ---DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNN 127
L + ++TL++ +N + V + SL + L++N
Sbjct: 96 KMFLGLHQ-LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 76.3 bits (187), Expect = 7e-16
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 203 AFNGLNSTLEFLDLE-NNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
G + L L +E L ++ + R L +L+ L + + + F+ + F L
Sbjct: 26 HLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 261 ISLSGNKLTRIP-DFIHNKRLSHLNLGYNFLN 291
++LS N L + + L L L N L+
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 69.8 bits (170), Expect = 1e-13
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
L + + + L LY+ N ++ ++ L L+++++ + L +
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72
Query: 273 D--FIHNKRLSHLNLGYNFLNEL 293
F RLS LNL +N L L
Sbjct: 73 PDAFHFTPRLSRLNLSFNALESL 95
Score = 64.0 bits (155), Expect = 1e-11
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 142 KLDLSNNLISTINLNLNNTYYIKDLILSYNQ-ISKLNANTFRNL-NVFRLYLKFNKISEI 199
L + + +L + +L + Q + L R L + L + + + +
Sbjct: 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 200 HDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNN 242
AF+ L L+L N L +++ L+ L L N
Sbjct: 72 APDAFHFTPR-LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 36.3 bits (83), Expect = 0.011
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 82 MDSNLLQTLDSLP--KTMETLSVANNYLVNYLE---LNRMTSLKWIVLSNN---YIKEFV 133
L +L LP + + L + N + +LE L + L+ + + + ++
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 134 IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
+ +L+LS N + +++ +++L+LS N
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 29.7 bits (66), Expect = 1.3
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 54 KLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDS---LPKTMETLSVANNYLV 108
+L L I ++ + + + + LN+ N L++L +++ L ++ N L
Sbjct: 57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 75.3 bits (185), Expect = 3e-15
Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 15/227 (6%)
Query: 72 NGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKE 131
+ L +L +L ++ + +++ + + +
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKAL--SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314
Query: 132 FVIP---NRKHIEKLDLSNNLISTINL-NLNNTYYIKDLILSYNQISKLN--ANTFRNL- 184
+ LD SNNL++ N + ++ LIL NQ+ +L+ A +
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374
Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNL-KKLKYLYLHNNN 243
++ +L + N +S +L L++ +N LT+ FR L ++K L LH+N
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPRIKVLDLHSNK 432
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
I+ I L L+ ++++ N+L +PD F L + L N
Sbjct: 433 IKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 73.7 bits (181), Expect = 9e-15
Identities = 41/269 (15%), Positives = 105/269 (39%), Gaps = 26/269 (9%)
Query: 18 CSENVQISCILLMSAENEDNQIAELETANWSPEIQN-KLTTLFIGENHIHQIENL--NGF 74
N ++S + L + E N + W + ++ + + + +
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275
Query: 75 RSILWLNMDSNLLQTLDSLPK------TMETLSVANNYLVNYLELNRMTSLKWIVLSNNY 128
+++ + S++ S ++ +V+ +V+ L ++++ + SNN
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335
Query: 129 IKEF---VIPNRKHIEKLDLSNNLISTIN------LNLNNTYYIKDLILSYNQISK-LNA 178
+ + + +E L L N + ++ + + L +S N +S
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ---LDISQNSVSYDEKK 392
Query: 179 NTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYL 237
++ L + N +++ F L ++ LDL +N++ +I + L+ L+ L
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDT---IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449
Query: 238 YLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
+ +N ++ + + F+ L +L+ I L N
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 69.1 bits (169), Expect = 3e-13
Identities = 35/228 (15%), Positives = 82/228 (35%), Gaps = 15/228 (6%)
Query: 80 LNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKH 139
L++ + L T+ + N + L+L T++ + +SN ++ +
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269
Query: 140 IEKLDLSNNLISTINLNLNNTYY---------IKDLILSYNQISKLNANTFRNLNVFR-L 189
L I + ++ + + + ++ ++ F L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329
Query: 190 YLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQC---FRNLKKLKYLYLHNNNIEF 246
N +++ L LE L L+ N+L +++ +K L+ L + N++ +
Sbjct: 330 DFSNNLLTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 247 IQN-NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ +L S+++S N LT R+ L+L N + +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI 436
Score = 68.7 bits (168), Expect = 4e-13
Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 18/273 (6%)
Query: 42 LETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLS 101
L E L HI N + L+ + +
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206
Query: 102 VANNYLVNYLELNRMTSL----KWIVLSNNYIKEFVIPNRKHIEKLDLSNNLI------S 151
++ L+ N S N++I+ + + +SN +
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266
Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNST 210
+ + + + + + + + N+ + +H + + S
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI-SP 325
Query: 211 LEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNT--FEHLVNLKSISLSGNK 267
LD NN LT+ + +L +L+ L L N ++ + + +L+ + +S N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 268 LTRIP---DFIHNKRLSHLNLGYNFLNELILES 297
++ D K L LN+ N L + I
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Score = 67.2 bits (164), Expect = 1e-12
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 138 KHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNK 195
+ L++S N IS + + + + ++ LI+S+N+I L+ + F+ + L L NK
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNINQC--FRNLKKLKYLYLHNNNIEFIQNNTFE 253
+ +I + + + L+ LDL N + C F N+ +LK+L L ++E
Sbjct: 81 LVKI---SCHPTVN-LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
Query: 254 HLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILES 297
HL K + + G D + + +L F
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180
Score = 63.3 bits (154), Expect = 2e-11
Identities = 31/250 (12%), Positives = 75/250 (30%), Gaps = 12/250 (4%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSL----PKTMETLSVANNYLV 108
N L + + E+ G + ++ + ++ + +
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTY-YIKDLI 167
LE N+ + I+ + +IE S I + + Y I ++
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258
Query: 168 LSYNQISKLNANTFRNLNVFRL-YLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-N 225
L + + +L + + + + + S + + + +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSGTRMVHM 317
Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD----FIHNKRLS 281
C + +L NN + HL L+++ L N+L + K L
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377
Query: 282 HLNLGYNFLN 291
L++ N ++
Sbjct: 378 QLDISQNSVS 387
Score = 63.0 bits (153), Expect = 3e-11
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
L+ L++ N ++ + +L KL+ L + +N I+++ + F+ L+ + LS
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77
Query: 265 GNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
NKL +I L HL+L +N + L
Sbjct: 78 HNKLVKIS-CHPTVNLKHLDLSFNAFDAL 105
Score = 61.4 bits (149), Expect = 1e-10
Identities = 33/252 (13%), Positives = 71/252 (28%), Gaps = 15/252 (5%)
Query: 54 KLTTLFIGENHIHQIENLNGF---RSILWLNMDSNLLQTLDSLPKT-METLSVANNYLVN 109
L L + N + F + +L + + L+ LP + V
Sbjct: 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150
Query: 110 YLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILS 169
Y E L+ + +I I + + ++ K
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210
Query: 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN------ 223
NL + + +N I ++T+ + + N +L
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRD 267
Query: 224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLS 281
+ +LK L + ++ F Q+ +E N+ + + + +
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327
Query: 282 HLNLGYNFLNEL 293
HL+ N L +
Sbjct: 328 HLDFSNNLLTDT 339
Score = 57.6 bits (139), Expect = 2e-09
Identities = 42/228 (18%), Positives = 82/228 (35%), Gaps = 22/228 (9%)
Query: 35 EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENL-----NGFRSILWLNMDSNLLQT 89
+ ++ L L I + F ++ N + +
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314
Query: 90 LDSL----PKTMETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKE-----FVIPNRK 138
+ L L +NN L + + +T L+ ++L N +KE + K
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374
Query: 139 HIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKI 196
+++LD+S N +S + + T + L +S N ++ + L L NKI
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP-RIKVLDLHSNKI 433
Query: 197 SEIHDFAFNGLNSTLEFLDLENNRLTNINQC-FRNLKKLKYLYLHNNN 243
I L+ L++ +N+L ++ F L L+ ++LH N
Sbjct: 434 KSIPKQVVKLEA--LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479
Score = 46.8 bits (111), Expect = 5e-06
Identities = 44/271 (16%), Positives = 85/271 (31%), Gaps = 41/271 (15%)
Query: 37 NQIAELETANWSPEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLP 94
N I+EL T++ +KL L I N I ++ + + +L++ N L +
Sbjct: 31 NYISELWTSDILS--LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-- 86
Query: 95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLI 150
+ +LK + LS N N ++ L LS +
Sbjct: 87 -------------------HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 151 STINLNL--NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLN 208
++ + L+L K + ++ N L++ F E H +
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
+ + N+C L L L Q N + L +I + N
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKL----------QTNPKLSNLTLNNIETTWNSF 237
Query: 269 TRIPDFIHNKRLSHLNLGYNFLNELILESSI 299
RI + + + + ++ L +
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 72.8 bits (179), Expect = 3e-15
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
LYL N+I+++ F+ L + L+ L L +N+L + F +L +L L L N +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLIN-LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNLGYNFL 290
+ + F+ LV+LK + + NKLT +P L+HL L N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 63.9 bits (156), Expect = 4e-12
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
+ L L NQI+KL F +L N+ LYL N++ + F+ L + L LDL N+LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTNQLT 101
Query: 223 NI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKR 279
+ + F L LK L++ N + + E L +L ++L N+L IP F
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 280 LSHLNLGYN 288
L+H L N
Sbjct: 161 LTHAYLFGN 169
Score = 60.5 bits (147), Expect = 5e-11
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 141 EKLDLSNNLISTINLNL-NNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISE 198
+ L L +N I+ + + ++ +K+L L NQ+ L F +L + L L N+++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
+ F+ L L+ L + N+LT + + L L +L L N ++ I + F+ L +L
Sbjct: 103 LPSAVFDRL-VHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 259 KSISLSGN 266
L GN
Sbjct: 162 THAYLFGN 169
Score = 42.4 bits (100), Expect = 8e-05
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 235 KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLNE 292
+ LYLH+N I ++ F+ L+NLK + L N+L +P F +L+ L+LG N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 293 L 293
L
Sbjct: 103 L 103
Score = 29.3 bits (66), Expect = 1.6
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 56 TTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYLV 108
L++ +N I ++E + ++ L + SN L L DSL + L + N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTNQL- 100
Query: 109 NYLEL---NRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNN 148
L +R+ LK + + N + E +P H+ L L N
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQN 145
Score = 27.7 bits (62), Expect = 4.6
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 79 WLNMDSNLLQTL----DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNN 127
L M N L L + L + L++ N L + + +R++SL L N
Sbjct: 116 ELFMCCNKLTELPRGIERLTH-LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 74.8 bits (183), Expect = 4e-15
Identities = 48/260 (18%), Positives = 92/260 (35%), Gaps = 15/260 (5%)
Query: 33 ENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDS 92
+ +L A+ + ++ + + + L R W DS + L
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC-RDSATDEQLFR 353
Query: 93 LPKTMETLSVANNYLVNYLELNRM-TSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIS 151
++E +V + L + EL + KW +L+ + + P E L + L +
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413
Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTL 211
+ ++ L N + K+ R L+ L ++ + +
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH-----LAHKDLTVLCHL---EQLLLV 465
Query: 212 EFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
LDL +NRL + L+ L+ L +N +E + +L L+ + L N+L +
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS 523
Query: 272 PDFIH---NKRLSHLNLGYN 288
RL LNL N
Sbjct: 524 AAIQPLVSCPRLVLLNLQGN 543
Score = 65.9 bits (160), Expect = 3e-12
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 15/243 (6%)
Query: 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMD 83
+ + +L S E L + + ++E N + L + +
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL-LTIILL 391
Query: 84 SNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKL 143
L L +T++ S + ++ R L + + + L
Sbjct: 392 MRALDPLLYEKETLQYFS-----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446
Query: 144 DLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFA 203
L++ ++ + +L + L LS+N++ L + L N + + A
Sbjct: 447 HLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 505
Query: 204 FNGLNSTLEFLDLENNRLTNIN--QCFRNLKKLKYLYLHNNNI---EFIQNNTFEHLVNL 258
L+ L L NNRL Q + +L L L N++ E IQ E L ++
Sbjct: 506 NL---PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
Query: 259 KSI 261
SI
Sbjct: 563 SSI 565
Score = 65.5 bits (159), Expect = 4e-12
Identities = 33/247 (13%), Positives = 80/247 (32%), Gaps = 11/247 (4%)
Query: 47 WSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
+P+ +N+ + +++ + + + + + S+ + L E +
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347
Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDL 166
S++ + + ++ E +I + L+ Y K+
Sbjct: 348 DEQLFRCE--LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-ALDPLLYEKET 404
Query: 167 ILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQ 226
+ ++ + ++ L+ R ++A L L + LT +
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV------RVLHLAHKDLTVLC- 457
Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLG 286
L + +L L +N + + L L+ + S N L + + RL L L
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516
Query: 287 YNFLNEL 293
N L +
Sbjct: 517 NNRLQQS 523
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 74.2 bits (183), Expect = 7e-15
Identities = 69/282 (24%), Positives = 107/282 (37%), Gaps = 48/282 (17%)
Query: 54 KLTTLFIGENHIH-QIENLNGFRSILWLNMDSNLL-----QTLDSLPKTMETLSVANNYL 107
+L L I N I L +S+ +L++ N L T+ L ++ N+
Sbjct: 248 ELKLLNISSNQFVGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 108 VNYL--ELNRMTSLKWIVLSNNY----IKEFVIPNRKHIEKLDLSNNLIS-TINLNL-NN 159
+ + L+ + LS+N + + + ++ LDLS N S + +L N
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 160 TYYIKDLILSYNQIS-----KLNANTFRNLNVFRLYLKFNKIS-------------EIHD 201
+ + L LS N S L N L LYL+ N +
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQE--LYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 202 FAFNGLN----------STLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNN 250
+FN L+ S L L L N L I Q +K L+ L L N++ +
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 251 TFEHLVNLKSISLSGNKLT-RIPDFIHN-KRLSHLNLGYNFL 290
+ NL ISLS N+LT IP +I + L+ L L N
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Score = 69.6 bits (171), Expect = 3e-13
Identities = 51/287 (17%), Positives = 105/287 (36%), Gaps = 49/287 (17%)
Query: 54 KLTTLFIGENHIH---QIENLNGFRSILWLNMDSNLL--------QTLDSLPKTMETLSV 102
L L + N + ++ S+ L++ +N + D + ++ L++
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE-LKHLAI 185
Query: 103 ANNYLVNYLELNRMTSLKWIVLSNNYIKEFV--IPNRKHIEKLDLSNNLIS-TINLNLNN 159
+ N + ++++R +L+++ +S+N + + + ++ LD+S N +S + ++
Sbjct: 186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245
Query: 160 TYYIKDLILSYNQIS-KLNANTFRNLNVFRLYLKFNKIS--------------EIHDFAF 204
+K L +S NQ + ++L L L NK + D +
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLKSLQY--LSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 205 NGLN----------STLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIE-FIQNNT 251
N S LE L L +N + ++ LK L L N + +
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 252 FEHLVNLKSISLSGNKLT-RIPDFIHN---KRLSHLNLGYNFLNELI 294
+L ++ LS N + I + L L L N I
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Score = 68.4 bits (168), Expect = 7e-13
Identities = 59/280 (21%), Positives = 111/280 (39%), Gaps = 38/280 (13%)
Query: 48 SPEIQN--KLTTLFIGENHIH-QIENLNGFRSILWLNMDSNLLQ-------TLDSLPKTM 97
S + + L +LF+ +HI+ + S+ L++ N L +L S +
Sbjct: 70 SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG-L 128
Query: 98 ETLSVANNYLVNYLE---LNRMTSLKWIVLSNNYI------KEFVIPNRKHIEKLDLSNN 148
+ L+V++N L + ++ SL+ + LS N I + ++ L +S N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Query: 149 LIS-TINL-NLNNTYYIKDLILSYNQIS-KLNANTFRNL-NVFRLYLKFNKIS-EIHDFA 203
IS +++ N ++ L +S N S + + + L + NK+S +
Sbjct: 189 KISGDVDVSRCVN---LEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI 243
Query: 204 FNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIE-FIQNNTFEHLVNLKSI 261
+ L+ L++ +N+ I LK L+YL L N I + L +
Sbjct: 244 ST--CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 262 SLSGNKLT-RIPDFIHN-KRLSHLNLGYNFLNELILESSI 299
LSGN +P F + L L L N + + ++
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Score = 58.0 bits (141), Expect = 2e-09
Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 25/264 (9%)
Query: 48 SPEIQN--KLTTLFIGENHIH-QI-ENLNGFRSILWLNMDSNLL-----QTLDSLPKTME 98
P + N +L +L + N++ I +L + L + N+L Q L + +E
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LE 469
Query: 99 TLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLIS- 151
TL + N L + L+ T+L WI LSNN + IP +++ L LSNN S
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSG 528
Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLNST 210
I L + + L L+ N + + N I+ + + + N
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ---SGKIAANFIAGKRYVYIKNDGMKK 585
Query: 211 LEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269
++ L + + + TF++ ++ + +S N L+
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 270 -RIPDFIHN-KRLSHLNLGYNFLN 291
IP I + L LNLG+N ++
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDIS 669
Score = 54.5 bits (132), Expect = 2e-08
Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 38/169 (22%)
Query: 136 NRKHIEKLDLSNN----LISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYL 191
+ +DLS+ S ++ +L + ++ L LS + I+
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN----------------- 90
Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTN---INQCFRNLKKLKYLYLHNNNIEF-I 247
+ F +++L LDL N L+ + LK+L + +N ++F
Sbjct: 91 -----GSVSGF---KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 248 QNNTFEHLVNLKSISLSGNKLT-RIPDFIHN----KRLSHLNLGYNFLN 291
+ + L +L+ + LS N ++ L HL + N ++
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Score = 45.7 bits (109), Expect = 2e-05
Identities = 54/264 (20%), Positives = 96/264 (36%), Gaps = 50/264 (18%)
Query: 53 NKLTTLFIGENHIH-QI-ENLNGFRSILWLNMDSNLL-----QTLDSLPKTMETLSVANN 105
L TL + N + +I L+ ++ W+++ +N L + + L + L ++NN
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNN 524
Query: 106 YLVNYL--ELNRMTSLKWIVLSNNYI-----------------------KEFVIPNRKHI 140
+ EL SL W+ L+ N + I N
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 141 EKLDLSNNLIS---TINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFR-LYLKFNKI 196
++ + NL+ + LN ++ + TF N L + +N +
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 197 S-----EIHDFAFNGLNSTLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNN 250
S EI G L L+L +N ++ +I +L+ L L L +N ++
Sbjct: 645 SGYIPKEI------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 251 TFEHLVNLKSISLSGNKLT-RIPD 273
L L I LS N L+ IP+
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPE 722
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 74.1 bits (182), Expect = 7e-15
Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 15/235 (6%)
Query: 66 HQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL--NRMTSLKWIV 123
+E LN + + +D ++ K++ V N + E + + +
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 124 LSNNYIKEFVIP---NRKHIEKLDLSNNLISTINL-NLNNTYYIKDLILSYNQISKLNAN 179
LS + + + L+ + N+ + + ++ LIL N +
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395
Query: 180 TFRNLNVFRLYLKFNKISEIHDFAFNGL---NSTLEFLDLENNRLTNINQCFRNL-KKLK 235
N+ L ++ ++ A++ ++ L+L +N LT FR L K+K
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS--VFRCLPPKVK 453
Query: 236 YLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
L LHNN I I + HL L+ ++++ N+L +PD F L ++ L N
Sbjct: 454 VLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 71.8 bits (176), Expect = 4e-14
Identities = 39/234 (16%), Positives = 93/234 (39%), Gaps = 24/234 (10%)
Query: 54 KLTTLFIGENHIHQIENLNGF-------RSILWLNMDSNLLQTL-----DSLPK-TMETL 100
+ L I I + + F +S++ ++ + + + ++ L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336
Query: 101 SVANNYLVNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNL 157
S+++ ++ + +S ++ + N + K ++ L L N +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396
Query: 158 NNTYYIKDLILSYNQISKLNANTFRNL-----NVFRLYLKFNKISEIHDFAFNGLNSTLE 212
T + L ++ LN++ + ++ L L N ++ F L ++
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS---VFRCLPPKVK 453
Query: 213 FLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
LDL NNR+ +I + +L+ L+ L + +N ++ + + F+ L +L+ I L N
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 63.4 bits (154), Expect = 3e-11
Identities = 32/268 (11%), Positives = 76/268 (28%), Gaps = 19/268 (7%)
Query: 37 NQIAELE----TANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDS 92
+ +L+ I L + I ++ N L + +S ++
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215
Query: 93 LPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLIST 152
+ L ++N L N R+ + + + + + ++ +
Sbjct: 216 SVNALGHLQLSNIKL-NDENCQRLMTFLSELTRGPTLLNVTLQH------IETTWKCSVK 268
Query: 153 INLNLNNTY----YIKDLILSYNQISKLNANTFRNLNVFRL-YLKFNKISEIHDFAFNGL 207
+ I +L ++ + + L + ++K + ++
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328
Query: 208 NSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
+ + L + I C + +L N L L+++ L N
Sbjct: 329 -AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 267 KLTRIPD-FIHNKRLSHLNLGYNFLNEL 293
L + K +S L LN L
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSL 415
Score = 62.2 bits (151), Expect = 5e-11
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
L + L L N ++ + L +L+ L L +N I + + F +L+ + +S
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108
Query: 265 GNKLTRIPDFIHNKRLSHLNLGYNFLNEL 293
N+L I L HL+L +N + L
Sbjct: 109 HNRLQNIS-CCPMASLRHLDLSFNDFDVL 136
Score = 59.1 bits (143), Expect = 6e-10
Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 18/281 (6%)
Query: 19 SENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSIL 78
++Q+S I L + E + L + ++ R +
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279
Query: 79 WLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRK 138
+LN+ + + + + + + ++ +++ K + + +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL--------YSVFAEM 331
Query: 139 HIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS 197
+I+ L + ++ + + L + N + L + L L+ N +
Sbjct: 332 NIKMLSI-SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 198 EIHDFAFNGLNST-LEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQNNTFEH 254
A N + LE LD+ N L + ++ + + L L +N + + F
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFRC 447
Query: 255 LV-NLKSISLSGNKLTRIPDFIHN-KRLSHLNLGYNFLNEL 293
L +K + L N++ IP + + + L LN+ N L +
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
Score = 56.4 bits (136), Expect = 5e-09
Identities = 50/273 (18%), Positives = 93/273 (34%), Gaps = 27/273 (9%)
Query: 55 LTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTL-----DSLPKTMETLSVANNYL 107
L + +N I ++ ++ + L + N +++L +E L V++N L
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD-LEYLDVSHNRL 112
Query: 108 VNYLELNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLISTINLN--LNNTY 161
N + M SL+ + LS N N + L LS ++L +
Sbjct: 113 QN-ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 162 YIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
L L I + + N L+L F+ S +N L L L N +L
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN-ALGHLQLSNIKL 230
Query: 222 TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLS 281
N C R + L L + L+ I + ++ F + +
Sbjct: 231 -NDENCQRLMTFLSELTRGPTLLNVT----------LQHIETTWKCSVKLFQFFWPRPVE 279
Query: 282 HLNLGYNFLNELILESSIVENEIIDQNMLFNSN 314
+LN+ + E I +E ++++
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHV 312
Score = 51.4 bits (123), Expect = 2e-07
Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 35 EDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENL-----NGFRSILWLNMDSNLLQT 89
+ I E + L +L I + F + + +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 90 L----DSLPKTMETLSVANNYLVNYLE--LNRMTSLKWIVLSNNYIKE-----FVIPNRK 138
+ P + L+ N + + + + L+ ++L N +K + N
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403
Query: 139 HIEKLDLSNNLISTI--NLNLNNTYYIKDLILSYNQISKLNANTFRNL--NVFRLYLKFN 194
+E LD+S N +++ + I L LS N ++ FR L V L L N
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS---VFRCLPPKVKVLDLHNN 460
Query: 195 KISEIHDFAFNGLNSTLEFLDLENNRLTNINQ-CFRNLKKLKYLYLHNNN 243
+I I L + L+ L++ +N+L ++ F L L+Y++LH+N
Sbjct: 461 RIMSIPK-DVTHLQA-LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 47.9 bits (114), Expect = 2e-06
Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 11/234 (4%)
Query: 93 LPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSN 147
LP + LS++ N + + +++ ++ L+ + LS+N I+ V + +E LD+S+
Sbjct: 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109
Query: 148 NLISTINL-NLNNTYYIKDLILSYNQISKL-NANTFRNL-NVFRLYLKFNKISEIHDFAF 204
N + I+ + + ++ L LS+N L F NL + L L K ++
Sbjct: 110 NRLQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Query: 205 NGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
L+ + LDL + + + L+L + + L + LS
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226
Query: 265 GNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVME 318
KL LS L G LN + + F V
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 70.5 bits (173), Expect = 2e-14
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
L L+ N + + + F+ L S L L L N+L ++ N F L L YL L N ++
Sbjct: 32 YLDLETNSLKSLPNGVFDELTS-LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK--RLSHLNLGYNFL 290
+ N F+ L LK ++L+ N+L +PD + +K +L L L N L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 68.9 bits (169), Expect = 4e-14
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
L L N + L F L ++ +LYL NK+ + + FN L ++L +L+L N+L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTNQLQ 89
Query: 223 NI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKR 279
++ N F L +LK L L+ N ++ + + F+ L LK + L N+L +PD F
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 280 LSHLNLGYN 288
L ++ L N
Sbjct: 150 LQYIWLHDN 158
Score = 28.5 bits (64), Expect = 2.5
Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 69/199 (34%)
Query: 49 PEIQNKLTTLFIGENHIHQIEN--LNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
I + T L + N + + N + S+ L + N LQ SLP +
Sbjct: 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---SLPNGV--------- 71
Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNR--KHIEKLDLSNNLISTINLNLNNTYYIK 164
N++TSL ++ LS N ++ +PN + +L K
Sbjct: 72 ------FNKLTSLTYLNLSTNQLQS--LPNGVFDKLTQL--------------------K 103
Query: 165 DLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN 223
+L L+ NQ+ L F L + L L N++ + D F+
Sbjct: 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD------------------ 145
Query: 224 INQCFRNLKKLKYLYLHNN 242
L L+Y++LH+N
Sbjct: 146 ------RLTSLQYIWLHDN 158
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 68.4 bits (168), Expect = 5e-14
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 9/168 (5%)
Query: 124 LSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNA-NTFR 182
L + + + L+N ++ + + + IKDL ++ + N +
Sbjct: 30 LGQSSTANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLS 88
Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYL-H 240
NL RL + ++ +GL S L LD+ ++ + L K+ + L +
Sbjct: 89 NLE--RLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145
Query: 241 NNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
N I I + L LKS+++ + + +L+ L
Sbjct: 146 NGAITDIMP--LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191
Score = 65.4 bits (160), Expect = 6e-13
Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 6/170 (3%)
Query: 104 NNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYY 162
+ +M SL +I L+N + + I +I+ L ++N + N ++
Sbjct: 31 GQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSN 89
Query: 163 IKDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRL 221
++ L + ++ L ++ L + + + N L + +DL N
Sbjct: 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK-VNSIDLSYNGA 148
Query: 222 TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRI 271
+ L +LK L + + + + E L + +
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
Score = 64.6 bits (158), Expect = 2e-12
Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 126 NNYIKEFVIPNRKHIEKLDLSNNLISTI-NLNLNNTYYIKDLILSYNQISKL-NANTFRN 183
+ K L + + I +N+ + + L+ ++ L N
Sbjct: 11 SQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTGIEYAHN 67
Query: 184 LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN-QCFRNLKKLKYLYLHNN 242
+ L + + + + S LE L + +T+ L L L + ++
Sbjct: 68 IKD--LTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
Query: 243 NIEFIQNNTFEHLVNLKSISLSGN-KLTRIPDFIHNKRLSHLNLGYNFLNEL 293
+ L + SI LS N +T I L LN+ ++ +++
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174
Score = 53.8 bits (130), Expect = 6e-09
Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 27/194 (13%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYL 111
+G++ I S+ ++ + + + L + ++ L++ N + NY
Sbjct: 24 AYLNGLLGQSSTANITEAQ-MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN 82
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
++ +++L+ + + + IPN + L L +S++
Sbjct: 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--------------------TLLDISHS 122
Query: 172 QISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
L V + L +N I D L+ L+++ + + + +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHDYR-GIED 179
Query: 231 LKKLKYLYLHNNNI 244
KL LY + I
Sbjct: 180 FPKLNQLYAFSQTI 193
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
L + NI + + L Y+ L N N+ + E+ N+K ++++ T
Sbjct: 28 GLLGQSSTANITEA--QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP 83
Query: 274 FIHNKRLSHLNLGYNFLNELILES 297
L L + + + +
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPN 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 65.4 bits (160), Expect = 4e-13
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEF 246
RL L+ NK+ + F+ L L L L N++ ++ + F L KL LYLH N ++
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQ-LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 247 IQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYN 288
+ N F+ L LK ++L N+L +PD F L + L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 61.1 bits (149), Expect = 1e-11
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI 224
L L N++ L F L + +L L N+I + D F+ L + L L L N+L ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL-TKLTILYLHENKLQSL 91
Query: 225 -NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
N F L +LK L L N ++ + + F+ L +L+ I L N
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 58.0 bits (141), Expect = 2e-10
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
G+ S+ L+LE+N+L ++ + F L +L L L N I+ + + F+ L L + L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 265 GNKLTRIPDFIHNK--RLSHLNLGYNFL 290
NKL +P+ + +K +L L L N L
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQL 112
Score = 27.2 bits (61), Expect = 5.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 79 WLNMDSNLLQTL-----DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNN 127
L + N LQ+L D L + ++ L++ N L V +R+TSL+ I L N
Sbjct: 80 ILYLHENKLQSLPNGVFDKLTQ-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 67.6 bits (165), Expect = 5e-13
Identities = 42/249 (16%), Positives = 88/249 (35%), Gaps = 26/249 (10%)
Query: 70 NLNGFRSILWLNMDSNLLQTLDSLPK------TMETLSVANNYLVNYLELNRMTSLKWIV 123
+ + ++ +++L Q D + T+ + + L L + ++ L+ +
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 124 LSNNYI-----KEFVIPNRKHIEKLDLSNNLISTINLNLNNTY-----YIKDLILSYNQI 173
L N + + + L+L N +T + L +K L ++
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 174 SKLNANTFRNLNVFR-LYLKFNKIS---EIHDFAFNGLNSTLEFLDLENNRLTNIN---- 225
+ R L L N + TL+ L L N + +
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221
Query: 226 QCFRNLKKLKYLYLHNNNI-EFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLN 284
+L+ L L +N++ + + + L S++LS L ++P + +LS L+
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL-PAKLSVLD 280
Query: 285 LGYNFLNEL 293
L YN L+
Sbjct: 281 LSYNRLDRN 289
Score = 65.7 bits (160), Expect = 2e-12
Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 36/281 (12%)
Query: 27 ILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNL 86
LL + E + + + + I + + G + L +++
Sbjct: 47 YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106
Query: 87 L------QTLDSLPKTMETLSVANNYLVNY------LELNRMTSLKWIVLSNNYIKEFVI 134
+ L++ + L++ N L+ LK + ++ + F
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166
Query: 135 P---NRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYL 191
+ LDLS+N ++ L + L RN
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISA--------LCPLKFPTLQVLALRNAG------ 212
Query: 192 KFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI--NQCFRNLKKLKYLYLHNNNIEFIQN 249
S + L+ LDL +N L + +L L L ++ +
Sbjct: 213 -METPSGVCSALAAARVQ-LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270
Query: 250 NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFL 290
L + LS N+L R P ++ +L+L N
Sbjct: 271 GLPA---KLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308
Score = 49.5 bits (118), Expect = 5e-07
Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 29/179 (16%)
Query: 55 LTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
L L I + H E + F ++ L++ N L++ L
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------------ERGLISALC 196
Query: 113 LNRMTSLKWIVLSNNYIKEF------VIPNRKHIEKLDLSNNLISTI--NLNLNNTYYIK 164
+ +L+ + L N ++ + R ++ LDLS+N + + + +
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256
Query: 165 DLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN 223
L LS+ + ++ L+V L L +N++ + L L+ N +
Sbjct: 257 SLNLSFTGLKQVPKGLPAKLSV--LDLSYNRLDRNPSPDEL---PQVGNLSLKGNPFLD 310
Score = 47.6 bits (113), Expect = 2e-06
Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 23/201 (11%)
Query: 109 NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLIL 168
+ ++ + SLK + + I ++ + L +S L L N L +
Sbjct: 60 QFTDIIKSLSLKRLTVRAARIPSRILFG--ALRVLGISGLQ----ELTLEN------LEV 107
Query: 169 SYNQISKLNANTFRNLNVFRLY-LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQ 226
+ L T +LN+ L + + L L+ L + N +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167
Query: 227 CFRNLKKLKYLYLHNNNI----EFIQNNTFEHLVNLKSISLSGNKLTRIPD-----FIHN 277
R L L L +N I L+ ++L +
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 278 KRLSHLNLGYNFLNELILESS 298
+L L+L +N L + S
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPS 248
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 66.1 bits (162), Expect = 2e-12
Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 28/259 (10%)
Query: 52 QNKLTTLF--IGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVN 109
L + + H + N + S W +SN Q + ++ + +
Sbjct: 22 STALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATA-------D 73
Query: 110 YLELNRMTSLKWIVLSNNYIKEF--VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLI 167
LE + L + + +F H++ + + + + + ++ L
Sbjct: 74 LLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLT 133
Query: 168 LSYNQISKLNANTFRNL-NVFRLYL-KFNKISEI--------HDFAFNGLNSTLEFLDLE 217
L+ N + L + +L + L + +++E+ GL + L+ L LE
Sbjct: 134 LARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN-LQSLRLE 191
Query: 218 NNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG-NKLTRIPDFIH 276
+ ++ NL+ LK L + N+ + + HL L+ + L G L P
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 277 N-KRLSHLNL-GYNFLNEL 293
L L L + L L
Sbjct: 251 GRAPLKRLILKDCSNLLTL 269
Score = 56.1 bits (136), Expect = 4e-09
Identities = 23/195 (11%), Positives = 60/195 (30%), Gaps = 16/195 (8%)
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYN 171
+ + + + + ++ ++ N+ + +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66
Query: 172 QISKLNAN--TFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFR 229
+ L L+ + + D AF L+ L+ + ++ L + +
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSH-LQHMTIDAAGLMELPDTMQ 124
Query: 230 NLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSG-NKLTRIPDFIHN----------K 278
L+ L L N + + + L L+ +S+ +LT +P+ + +
Sbjct: 125 QFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 279 RLSHLNLGYNFLNEL 293
L L L + + L
Sbjct: 184 NLQSLRLEWTGIRSL 198
Score = 47.2 bits (113), Expect = 3e-06
Identities = 43/268 (16%), Positives = 83/268 (30%), Gaps = 55/268 (20%)
Query: 52 QNKLTTLFIGENHIHQI-ENLNGFRSILWLNMDSNLLQTLDSLPKTM------ETLSVAN 104
Q L + + Q + + + +D+ L LP TM ETL++A
Sbjct: 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLAR 136
Query: 105 NYLVNYL--ELNRMTSLKWIVLS-NNYIKEF-----------VIPNRKHIEKLDLSNNLI 150
N L L + + L+ + + + E +++ L L I
Sbjct: 137 NPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195
Query: 151 STINLNLNNTYYIKDLILSYNQISKLNAN--TFRNLNVFRLYLKFNKISEIHDFAFNGLN 208
++ ++ N +K L + + +S L L L + F G
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR-GCTALRNYPP-IFGGRA 253
Query: 209 STLEFLDLEN-NRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK 267
L+ L L++ + L + L +L+ L L
Sbjct: 254 P-LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC-----------------------VN 289
Query: 268 LTRIPDFIHN-KRLSHLNLGYNFLNELI 294
L+R+P I + + + +L
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLD 317
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 63.5 bits (155), Expect = 2e-12
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 143 LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLN--ANTFRNLNVFRLYLKFNKISEIH 200
+ L+ LI N ++L L +I + T + + N+I ++
Sbjct: 2 VKLTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDA--IDFSDNEIRKLD 58
Query: 201 DFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQN-NTFEHLVNL 258
F L L+ L + NNR+ I + L L L L NN++ + + + L +L
Sbjct: 59 GFP---LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 259 KSISLSGNKLTRIPDF 274
+ + N +T +
Sbjct: 116 TYLCILRNPVTNKKHY 131
Score = 56.6 bits (137), Expect = 6e-10
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 211 LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTR 270
LDL ++ I L + + +N I + F L LK++ ++ N++ R
Sbjct: 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICR 78
Query: 271 IPDFIHN--KRLSHLNLGYNFLNEL 293
I + + L+ L L N L EL
Sbjct: 79 IGEGLDQALPDLTELILTNNSLVEL 103
Score = 54.7 bits (132), Expect = 2e-09
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 7/130 (5%)
Query: 124 LSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL-NANTF 181
L+ I++ N +LDL I I + S N+I KL
Sbjct: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
Query: 182 RNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN--QCFRNLKKLKYLYL 239
R L L + N+I I + L L L L NN L + +LK L YL +
Sbjct: 64 RRLKT--LLVNNNRICRIGEGLDQALPD-LTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 240 HNNNIEFIQN 249
N + ++
Sbjct: 121 LRNPVTNKKH 130
Score = 51.6 bits (124), Expect = 4e-08
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
+ L + Q + N + + L L I I+N L +I S N++ ++
Sbjct: 2 VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG 59
Query: 274 FIHNKRLSHLNLGYNFLNEL 293
F +RL L + N + +
Sbjct: 60 FPLLRRLKTLLVNNNRICRI 79
Score = 50.4 bits (121), Expect = 9e-08
Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 58 LFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTM---ETLSVANNYLVNYLELN 114
+ + I Q L++ + +++L T+ + + ++N +
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61
Query: 115 RMTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTIN--LNLNNTYYIKDLILS 169
+ LK ++++NN I E + + +L L+NN + + L + + L +
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 170 YNQISKLN 177
N ++
Sbjct: 122 RNPVTNKK 129
Score = 32.7 bits (75), Expect = 0.074
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 54 KLTTLFIGENHIHQIENLNGFRSILWLNMDSN----LLQTLDSLPKTMETLSVANNYLVN 109
+ + +N I +++ R + L +++N + + LD + L + NN LV
Sbjct: 43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102
Query: 110 YLE---LNRMTSLKWIVLSNNYI------KEFVIPNRKHIEKLD 144
+ L + SL ++ + N + + +VI + LD
Sbjct: 103 LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 63.9 bits (156), Expect = 2e-12
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 12/143 (8%)
Query: 165 DLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS--TLEFLDLENNRLT 222
+L I K++A L L N I +I + L+ L L L N +
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSLGRNLIK 83
Query: 223 NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIH---NKR 279
I L+ L++ N I + E LVNL+ + +S NK+T + +
Sbjct: 84 KIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141
Query: 280 LSHLNLGYNFLNELILESSIVEN 302
L L L N L E++
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSE 164
Score = 55.5 bits (134), Expect = 2e-09
Identities = 30/151 (19%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT---LDS 92
I +E + + L + N+I +I +L+G ++ L++ NL++ LD+
Sbjct: 31 HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDA 90
Query: 93 LPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNN 148
+ T+E L ++ N + + + ++ +L+ + +SNN I + + +E L L+ N
Sbjct: 91 VADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Query: 149 LIST-INLNLNNTYYIKDLILSYNQISKLNA 178
+ N + Y +++ + KL+
Sbjct: 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 62.6 bits (153), Expect = 3e-11
Identities = 41/192 (21%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLIS-TINLNLNNTYYIKDL 166
+ ++T L ++ +++ + IP K + LD S N +S T+ ++++ + +
Sbjct: 96 AIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 167 ILSYNQISKLNANTFRNL--NVFRLYLKFNKIS-EI-HDFAFNGLNSTLEFLDLENNRLT 222
N+IS +++ + + + N+++ +I FA N L F+DL N L
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA----NLNLAFVDLSRNMLE 210
Query: 223 -NINQCFRNLKKLKYLYLHNNNIEF-IQNNTFEHLVNLKSISLSGNKLT-RIPDFIHN-K 278
+ + F + K + ++L N++ F + NL + L N++ +P + K
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 279 RLSHLNLGYNFL 290
L LN+ +N L
Sbjct: 269 FLHSLNVSFNNL 280
Score = 61.0 bits (149), Expect = 7e-11
Identities = 39/207 (18%), Positives = 80/207 (38%), Gaps = 25/207 (12%)
Query: 98 ETLSVANNYLVNYL--ELNRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLIS 151
L + + + + L+++ +L + S N + +P + ++ + N IS
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRIS 162
Query: 152 -TINLNL-NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS-EIHDFAFNGLN 208
I + + + + +S N+++ TF NLN+ + L N + + + +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS--D 220
Query: 209 STLEFLDLENNRLT-NINQCFRNLKKLKYLYLHNNNI-----EFIQNNTFEHLVNLKSIS 262
+ + L N L ++ + K L L L NN I + + L L S++
Sbjct: 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ-----LKFLHSLN 274
Query: 263 LSGNKLT-RIPDFIHNKRLSHLNLGYN 288
+S N L IP + +R N
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANN 301
Score = 53.3 bits (129), Expect = 3e-08
Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 24/197 (12%)
Query: 112 ELNRMTSLKWIVLSNNYIK-EFVIP----NRKHIEKLDLS--NNLISTINLNLNNTYYIK 164
+ + + LS + + IP N ++ L + NNL+ I + +
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 165 DLILSYNQISKLNANTFRNL-NVFRLYLKFNKIS-----EIHDFAFNGLNSTLEFLDLEN 218
L +++ +S + + + L +N +S I L + +
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI------SSLPNLVGITFDG 158
Query: 219 NRLT-NINQCFRNLKKL-KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFI 275
NR++ I + + KL + + N + TF +L NL + LS N L
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217
Query: 276 -HNKRLSHLNLGYNFLN 291
+K ++L N L
Sbjct: 218 GSDKNTQKIHLAKNSLA 234
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 55.8 bits (135), Expect = 8e-10
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ 248
L L ++ +E LEFL N LT+I L KLK L L +N +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSGGL 80
Query: 249 NNTFEHLVNLKSISLSGNKLTRIPDFIH---NKRLSHLNLGYN 288
E NL ++LSGNK+ + + L L+L
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 52.4 bits (126), Expect = 1e-08
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 111 LELNRMTSLKWIVLSNNYIKEFVIPN----RKHIEKLDLSNNLISTINLNLNNTYYIKDL 166
L + +K +VL N+ E + + +E L N +++I NL +K L
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKL 69
Query: 167 ILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
LS N++S N+ L L NKI ++ L+ LDL N +TN+N
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Query: 226 ----QCFRNLKKLKYL 237
F+ L +L YL
Sbjct: 130 DYRENVFKLLPQLTYL 145
Score = 50.1 bits (120), Expect = 6e-08
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 155 LNLNNTYYIKDLILSYNQISKL----NANTFRNLNVFRLYLKFNKISEIHDFAFNGLNST 210
L +K+L+L ++ ++ + F L L ++ I + +
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEF--LSTINVGLTSIANLP---KLNK 65
Query: 211 LEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKL 268
L+ L+L +NR++ L +L L N I+ + + L NLKS+ L ++
Sbjct: 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
Query: 269 TRIPDF 274
T + D+
Sbjct: 126 TNLNDY 131
Score = 48.5 bits (116), Expect = 2e-07
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 209 STLEFLDLENNRLTNINQ--CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
S ++ L L+N+R ++L++L N + I N L LK + LS N
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74
Query: 267 KLTRIPDFIHN--KRLSHLNLGYNFLNEL 293
+++ + + L+HLNL N + +L
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Score = 40.4 bits (95), Expect = 1e-04
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 229 RNLKKLKYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGY 287
R +K L L N+ + + L+ +S LT I + +L L L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73
Query: 288 NFLNEL 293
N ++
Sbjct: 74 NRVSGG 79
Score = 38.9 bits (91), Expect = 5e-04
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 41 ELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTME 98
LE N +P +L N + F + +L+ + L ++ +LP ++
Sbjct: 8 HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLK 67
Query: 99 TLSVANNYLVNYLEL--NRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLIST 152
L +++N + LE+ + +L + LS N IK+ + ++++ LDL N ++
Sbjct: 68 KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127
Query: 153 IN 154
+N
Sbjct: 128 LN 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 55.5 bits (134), Expect = 1e-09
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ 248
L L K ++ LEFL L N L +++ L KLK L L N I
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRIFGGL 87
Query: 249 NNTFEHLVNLKSISLSGNKLTRIPDFIH---NKRLSHLNLGYN 288
+ E L NL ++LSGNKL I + L L+L
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 54.7 bits (132), Expect = 2e-09
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 118 SLKWIVLSNNYIKEFVIPN----RKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
+++ +VL N + I ++E L L N + +++ NL +K L LS N+I
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRI 83
Query: 174 SKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN----QCF 228
L N+ L L NK+ +I L+ LDL N +TN+N F
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143
Query: 229 RNLKKLKYL 237
+ L +L YL
Sbjct: 144 KLLPQLTYL 152
Score = 52.8 bits (127), Expect = 1e-08
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 5/136 (3%)
Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIH 200
+D+ + + L + K+ T +N+ L L + +
Sbjct: 6 SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS 65
Query: 201 DFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQN-NTFEHLVNL 258
+ L+ L+L NR+ + L L +L L N ++ I + L L
Sbjct: 66 NLP---KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122
Query: 259 KSISLSGNKLTRIPDF 274
KS+ L ++T + D+
Sbjct: 123 KSLDLFNCEVTNLNDY 138
Score = 49.4 bits (118), Expect = 2e-07
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 213 FLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
LD + I L++L L N + + N L LK + LS N++
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGL 87
Query: 273 DFIHN--KRLSHLNLGYNFLNEL 293
D + L+HLNL N L ++
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLKDI 110
Score = 41.3 bits (97), Expect = 1e-04
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 229 RNLKKLKYLYLHN--NNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLG 286
R ++ L L N +N I+ T VNL+ +SL L + + +L L L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS 79
Query: 287 YNFLNEL 293
N +
Sbjct: 80 ENRIFGG 86
Score = 39.3 bits (92), Expect = 5e-04
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 41 ELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTME 98
LE N +P +L N F ++ +L++ + L ++ +LP ++
Sbjct: 15 HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLK 74
Query: 99 TLSVANNYLVNYLEL--NRMTSLKWIVLSNNYIKEF----VIPNRKHIEKLDLSNNLIST 152
L ++ N + L++ ++ +L + LS N +K+ + + ++ LDL N ++
Sbjct: 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134
Query: 153 IN 154
+N
Sbjct: 135 LN 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 55.3 bits (134), Expect = 1e-09
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
G+ +T + L L +N++T + F L +L L L NN + + F+ L L +SL+
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYN 288
N+L IP F + K L+H+ L N
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 54.5 bits (132), Expect = 3e-09
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
+ L L NQI+KL F L + RL L N+++ + F+ L L L L +N+L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-LTQLSLNDNQLK 91
Query: 223 NI-NQCFRNLKKLKYLYLHNN 242
+I F NLK L +++L NN
Sbjct: 92 SIPRGAFDNLKSLTHIWLLNN 112
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 54.2 bits (131), Expect = 4e-09
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 164 KDLILSYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
+ L L+ NQI+KL F +L N+ +LY NK++ I F+ L L LDL +N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ-LTQLDLNDNHLK 94
Query: 223 NI-NQCFRNLKKLKYLYLHNN 242
+I F NLK L ++YL+NN
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Score = 53.8 bits (130), Expect = 6e-09
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS 264
G+ + + L L NN++T + F +L L+ LY ++N + I F+ L L + L+
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 265 GNKLTRIPD--FIHNKRLSHLNLGYN 288
N L IP F + K L+H+ L N
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNN 115
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 56.5 bits (137), Expect = 4e-09
Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 52/223 (23%)
Query: 113 LNRMTSLKWIVLSNNYIKE-------FVIPNRKHIEKLDLSNNLISTINLNL------NN 159
L + + + L + + E + + +L+L +N + + ++
Sbjct: 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83
Query: 160 TYYIKDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKISEIHDFAFNGL------- 207
+ I+ L L ++ + L+L N + D L
Sbjct: 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDP 140
Query: 208 NSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI---------EFIQNNTFE 253
LE L LE L+ + R K L + NN+I + ++++
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP-- 198
Query: 254 HLVNLKSISLSGNKLTR------IPDFIHNKRLSHLNLGYNFL 290
L+++ L +T L L LG N L
Sbjct: 199 --CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Score = 50.3 bits (121), Expect = 4e-07
Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 87/298 (29%)
Query: 52 QNKLTTLFIGENHIHQI------ENLNGFRSILWLNMDSN---------LLQTLDSLPKT 96
Q +L L + + L L + +N L Q L P
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200
Query: 97 METLSVANN--------YLVNYLELNRMTSLKWIVLSNNYIK--------EFVIPNRKHI 140
+E L + + L + SL+ + L +N + ++ +
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASK--ASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258
Query: 141 EKLDLSNNLISTI-------NLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKF 193
L + I+ L + +K+L L+ N++ A L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKES--LKELSLAGNELGDEGARLLCET------LLE 310
Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIE--- 245
LE L +++ T + + L L + NN +E
Sbjct: 311 P-------------GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357
Query: 246 -------FIQNNTFEHLVNLKSISLSGNKLTRI------PDFIHNKRLSHLNLGYNFL 290
Q + L+ + L+ ++ + N L L+L N L
Sbjct: 358 VRELCQGLGQPGS-----VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
Score = 50.0 bits (120), Expect = 5e-07
Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 40/213 (18%)
Query: 117 TSLKWIVLSNNYIKE-------FVIPNRKHIEKLDLSNNLISTINLN------LNNTYYI 163
++ + L N + + +++L LS+NL+ L L+ +
Sbjct: 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144
Query: 164 KDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKISE-----IHDFAFNGLNSTLEF 213
+ L L Y +S + + L + N I+E + LE
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ-GLKDSPCQLEA 203
Query: 214 LDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI-----EFIQNNTFEHLVNLKSISL 263
L LE+ +T+ + + L+ L L +N + + L+++ +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263
Query: 264 SGNKLTRI------PDFIHNKRLSHLNLGYNFL 290
+T + L L+L N L
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 29/183 (15%)
Query: 138 KHIEKLDLSNNLISTINLN--LNNTYYIKDLILSYNQISKLNANTF-----RNLNVFRLY 190
I+ LD+ +S L + + L +++ N + L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 191 LKFNKISE-----IHDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLH 240
L+ N++ + + + ++ L L+N LT ++ R L L+ L+L
Sbjct: 63 LRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 241 NNNI-----EFIQNNTFEHLVNLKSISLSGNKLTRI------PDFIHNKRLSHLNLGYNF 289
+N + + + + L+ + L L+ L + N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 290 LNE 292
+NE
Sbjct: 182 INE 184
Score = 43.8 bits (104), Expect = 4e-05
Identities = 26/194 (13%), Positives = 62/194 (31%), Gaps = 42/194 (21%)
Query: 113 LNRMTSLKWIVLSNNYIKE-------FVIPNRKHIEKLDLSNNLISTINLNL------NN 159
L+ + L+ + + I V+ ++ +++L L+ N + L
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311
Query: 160 TYYIKDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKIS-----EIHDFAFNGLNS 209
++ L + + + F +N + L + N++ E+ S
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ-GLGQPGS 370
Query: 210 TLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI---------EFIQNNTFEHL 255
L L L + +++ + L+ L L NN + E ++
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC--- 427
Query: 256 VNLKSISLSGNKLT 269
L+ + L +
Sbjct: 428 -LLEQLVLYDIYWS 440
Score = 43.0 bits (102), Expect = 8e-05
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)
Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYL 237
+L++ L ++ ++S+ L + + L++ LT I+ R L L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 238 YLHNNNIEFIQNNTFEHL--------VNLKSISLSGNKLTRI------PDFIHNKRLSHL 283
L +N + + + ++ +SL LT L L
Sbjct: 62 NLRSNEL---GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 284 NLGYNFLNE 292
+L N L +
Sbjct: 119 HLSDNLLGD 127
Score = 33.4 bits (77), Expect = 0.097
Identities = 12/99 (12%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 207 LNSTLEFLDLENNRLTN--INQCFRNLKKLKYLYLHNNNI--EFIQN--NTFEHLVNLKS 260
++ ++ LD++ L++ + L++ + + L + + ++ + L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 261 ISLSGNKLT-----RIPDFIH--NKRLSHLNLGYNFLNE 292
++L N+L + + + ++ L+L L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 52.0 bits (125), Expect = 9e-08
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 48/228 (21%)
Query: 113 LNRMTSLKWIVLSNNYIKEF-------VIPNRKHIEKLDLSNNLIS-------------- 151
L + L + LS+N + +E L L NN +
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149
Query: 152 TINLNLNNTYYIKDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKISE--IHDFAF 204
+N N ++ +I N++ + + + + + + N I I
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209
Query: 205 NGL--NSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI------EFIQNNT 251
GL L+ LDL++N T+ + ++ L+ L L++ + + +
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269
Query: 252 FEHLVNLKSISLSGNKLTR-----IPDFI--HNKRLSHLNLGYNFLNE 292
+ L+++ L N++ + I L L L N +E
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317
Score = 49.7 bits (119), Expect = 5e-07
Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 43/192 (22%)
Query: 140 IEKLDLSNNLIS-----TINLNLNNTYYIKDLILSYNQISKLNANTF-----RNLNVFRL 189
IE L + I+ ++ L +K+++LS N I A ++
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 190 YLKFNKISEIHDFAFNGL---------NSTLEFLDLENNRLTN-----INQCFRNLKKLK 235
+ D L L + L +N + L+
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 236 YLYLHNNNI-------------EFIQNNTFEHLVNLKSISLSGNKLTRI------PDFIH 276
+LYLHNN + E N ++ L+SI N+L F
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185
Query: 277 NKRLSHLNLGYN 288
++ L + + N
Sbjct: 186 HRLLHTVKMVQN 197
Score = 41.6 bits (98), Expect = 2e-04
Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 40/227 (17%)
Query: 53 NKLTTLFIGENHIHQI------ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
KL T+ + +N + L+ + L + +N L P+ ++ A
Sbjct: 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-----PQAGAKIARALQE 148
Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEF-------VIPNRKHIEKLDLSNNLI------STI 153
L + L+ I+ N ++ + + + + + N I +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 154 NLNLNNTYYIKDLILSYNQISKLNANTF-----RNLNVFRLYLKFNKIS-----EIHDFA 203
L +K L L N + L ++ N+ L L +S + D
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268
Query: 204 FNGLNSTLEFLDLENNRLTN-----INQCFR-NLKKLKYLYLHNNNI 244
N L+ L L+ N + + + L +L L+ N
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 1e-06
Identities = 40/280 (14%), Positives = 85/280 (30%), Gaps = 66/280 (23%)
Query: 68 IENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRM-TSLKWIVLSN 126
+E L L +D N D + L L+ L +VL N
Sbjct: 199 LEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLN 252
Query: 127 NYIKEFVIPNRKHIEKLDLS-NNLISTINLNLNN---TYYIKDLILSYNQISKLNANTFR 182
+ N K +LS L++T + + + L ++ ++
Sbjct: 253 -------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-- 303
Query: 183 NLNVFRLYL--KFNKISE----IHDFAFNGL-------NSTLE-FLDLENNRLTNINQ-C 227
++ YL + + + + + +T + + + ++LT I +
Sbjct: 304 -KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 228 FRNLK----KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLS---GNKLTRIPDFI----H 276
L+ + + L + F ++ +I LS + + + H
Sbjct: 363 LNVLEPAEYRKMFDRL------SV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 277 NKRL--SHLNLGYNFLNELILESSI-VENE------IIDQ 307
L + + LE + +ENE I+D
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Score = 34.4 bits (78), Expect = 0.047
Identities = 33/250 (13%), Positives = 75/250 (30%), Gaps = 70/250 (28%)
Query: 123 VLSNNYIKEFVIPNRKHIEKLDLSNNLISTINL--------NLNNTYYIKDLILSY-NQI 173
V + ++ F + K ++ D+ +++S + ++ T + +LS ++
Sbjct: 24 VFEDAFVDNF---DCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 174 SKLNANTFRNLNVFRLYLKFNK-------ISEIHDFAFNGL-NSTLEFLDLENNR---LT 222
+ +N L ++ ++ + L N F +R
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 223 NINQCFRNLKKLKYLYLHN--------------NNIEFIQNNTF---------------- 252
+ Q L+ K + + + + F
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 253 -EHLVNL-----KSISLSGNKLTRIPDFIHN--KRLSHLNLGYNFLNEL-ILESSIVEN- 302
E L L + + + + I IH+ L L + N L +L + V+N
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNA 256
Query: 303 EIIDQNMLFN 312
+ + FN
Sbjct: 257 KAWN---AFN 263
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 48.2 bits (115), Expect = 1e-06
Identities = 39/261 (14%), Positives = 87/261 (33%), Gaps = 62/261 (23%)
Query: 86 LLQTLDSLPKTMETLSVANN--------YLVNYLELNRMTSLKWIVLSNNYIK------- 130
L+Q + P ++ +L+++ N LV L ++ + LS N++
Sbjct: 42 LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP-ANVTSLNLSGNFLSYKSSDEL 100
Query: 131 -EFVIPNRKHIEKLDLSNNLISTINLN------LNNTYYIKDLILSYNQISKLNANTF-- 181
+ + I LDL N S+ + + N I L L N + +++
Sbjct: 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160
Query: 182 ----RNLNVFRLYLKFNKISEIHDF----AFNGLNSTLEFLDLENNRLTN-----INQCF 228
NV L L+ N ++ + + +++ LDL N L + F
Sbjct: 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220
Query: 229 R-NLKKLKYLYLHNNNI---------EFIQNNTFEHLVNLKSISLSGNKLTRIPD----- 273
+ L L N + + +L+++ L + + +
Sbjct: 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK-----HLQTVYLDYDIVKNMSKEQCKA 275
Query: 274 ----FIHNKRLSHLNLGYNFL 290
F + +++ ++ +
Sbjct: 276 LGAAFPNIQKIILVDKNGKEI 296
Score = 46.6 bits (111), Expect = 5e-06
Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 54/228 (23%)
Query: 113 LNRMTSLKWIVLSNNYIK--------EFVIPNRKHIEKLDLSNNLISTIN-------LNL 157
+ + + LS N + + + L+LS N + N L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 158 NNTYYIKDLILSYNQISKLNANTF------RNLNVFRLYLKFNKISE--IHDF--AFNGL 207
+ L LS N +S +++ + L L +N S +F AF+ L
Sbjct: 78 IPAN-VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136
Query: 208 NSTLEFLDLENNRLTN-----INQCFRNL-KKLKYLYLHNNNIE----------FIQNNT 251
+++ L+L N L + Q + + L L NN+
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196
Query: 252 FEHLVNLKSISLSGNKLTR-----IPDFI--HNKRLSHLNLGYNFLNE 292
++ S+ LS N L + + LNL N L+
Sbjct: 197 -----SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239
Score = 45.1 bits (107), Expect = 2e-05
Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 45/227 (19%)
Query: 86 LLQTLDSLPKTMETLSVANN--------YLVNYLELNRMTSLKWIVLSNNYIK------- 130
Q +LP ++ +L++ N L+ L ++ + L N +
Sbjct: 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLRGNNLASKNCAEL 187
Query: 131 -EFVIPNRKHIEKLDLSNNLISTINLNL------NNTYYIKDLILSYNQISKLNANTF-- 181
+F+ + LDLS NL+ + + ++ L L N + +
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247
Query: 182 ---RNLNVFRLYLKFNKISEIHDFAFNGL------NSTLEFLDLENNRLTN-----INQC 227
++ +YL ++ + + L + +D + I+
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307
Query: 228 FRNL-KKLKYLYLHNNNIEFIQNNTFEHLVN-----LKSISLSGNKL 268
R L K L N + F Q + L+ + L
Sbjct: 308 IRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
Score = 27.7 bits (62), Expect = 5.4
Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 36/132 (27%)
Query: 54 KLTTLFIGENHIHQ---------IENLNGFRSILWLNMDSN---------LLQTLDSLPK 95
+ +L + N++ + ++ S+ L++ +N L S+P
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIP--ASVTSLDLSANLLGLKSYAELAYIFSSIPN 225
Query: 96 TMETLSVANNYL----VNYLE--LNRMTSLKWIVLSNNYIKEF----------VIPNRKH 139
+ +L++ N L + L+ + + L+ + L + +K PN +
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285
Query: 140 IEKLDLSNNLIS 151
I +D + I
Sbjct: 286 IILVDKNGKEIH 297
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 44.3 bits (105), Expect = 3e-05
Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 37/185 (20%)
Query: 138 KHIEKLDLSNNLISTINLN------LNNTYYIKDLILSYNQISKLNANTF--RNLNVFRL 189
+ +L+L+ ++ + + + + ++ L+ Q+ T L +L
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 190 YLKFNKISEIH----DFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLH 240
L+ N + + L L NN LT + + + +L L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 241 NNNI---------EFIQNNTFEHLVNLKSISLSGNKLTRI------PDFIHNKRLSHLNL 285
+ + + N L+ ++++ N + L L+L
Sbjct: 192 HTGLGDEGLELLAAQLDRNR-----QLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246
Query: 286 GYNFL 290
+N L
Sbjct: 247 YFNEL 251
Score = 35.8 bits (83), Expect = 0.014
Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 39/237 (16%)
Query: 84 SNLLQTLDSLPKTMETLSVANNYL----VNYLELNRMTSLKWIVLSNNYIK--------E 131
+ + L S ++ +++A+ L + L L + + L N + +
Sbjct: 90 TVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKDLRD 148
Query: 132 FVIPNRKHIEKLDLSNNLISTIN-------LNLNNTYYIKDLILSYNQISKLNANTF--- 181
++ ++ I L LSNN ++ L N + + L L + +
Sbjct: 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS--VTHLSLLHTGLGDEGLELLAAQ 206
Query: 182 --RNLNVFRLYLKFNKISEIHDFAF-NGL--NSTLEFLDLENNRLTN-----INQCFRNL 231
RN + L + +N + A + +LE L L N L++ +
Sbjct: 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266
Query: 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYN 288
+ + + + L + + L +L +
Sbjct: 267 EGGARVVVSLTEGTAVSEYWSVILSEV----QRNLNSWDRARVQRHLELLLRDLEDS 319
Score = 28.9 bits (65), Expect = 2.0
Identities = 18/172 (10%), Positives = 44/172 (25%), Gaps = 46/172 (26%)
Query: 95 KTMETLSVANN--------YLVNYLELNRMTSLKWIVLSNNYIKEF-------VIPNRKH 139
++ LS+ + L L+ N L+ + ++ N +
Sbjct: 183 TSVTHLSLLHTGLGDEGLELLAAQLDRN--RQLQELNVAYNGAGDTAALALARAAREHPS 240
Query: 140 IEKLDLSNNLIS---------TINLNLNNTYYIKDLILSYNQISK--------------- 175
+E L L N +S + + +S+
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGAAEGGAR-VVVSLTEGTAVSEYWSVILSEVQRNLNS 299
Query: 176 -LNANTFRNLNVFRLYLKFNKISE---IHDFAFNGLNSTLEFLDLENNRLTN 223
A R+L + L+ ++ + + + L + +
Sbjct: 300 WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 41.7 bits (98), Expect = 4e-05
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 206 GLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNN 242
L L N LT + L L+ +L N
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 40.9 bits (96), Expect = 8e-05
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
L L NN+ + + L L++ L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 30.2 bits (68), Expect = 0.35
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 256 VNLKSISLSGNKLTRIPD--FIHNKRLSHLNLGYNFLN 291
V+ + L+GN LT +P L +LG N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 29.8 bits (67), Expect = 0.48
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 188 RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLK 235
L L N ++ + + L + L L N +C L L+
Sbjct: 35 ELVLTGNNLTALPPGLLDALPA-LRTAHLGANPW----RCDCRLVPLR 77
Score = 26.7 bits (59), Expect = 5.7
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 166 LILSYNQISKLNANTFRNL-NVFRLYLKFN 194
L+L+ N ++ L L + +L N
Sbjct: 36 LVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 40.1 bits (94), Expect = 7e-04
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFE 253
+ + ++ + F + L+ DL ++T + ++ + L ++ I + F
Sbjct: 166 STLEQLKEDIFYYCYN-LKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFL 223
Query: 254 HLVNLKSISLSGNKLTRIPDF 274
LK+I + ++ I
Sbjct: 224 KTSQLKTIEIP-ENVSTIGQE 243
Score = 36.6 bits (85), Expect = 0.009
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTF 252
N + I AF NS + + L L +I + F N ++ + + +E ++ + F
Sbjct: 122 NSVKSIPKDAFR--NSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVF-PSTLEQLKEDIF 176
Query: 253 EHLVNLKSISLSGNKLTRIPD-FIHNKRLSHLNL 285
+ NLK LS K+T++P + + L
Sbjct: 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210
Score = 33.5 bits (77), Expect = 0.074
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 158 NNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLE 217
Y +K LS +I+KL A+TF + + L + EI AF + L+ +++
Sbjct: 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQ-LKTIEIP 234
Query: 218 NNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN-----KLTRI 271
N ++ I + FR + + L N + I + F + L ++ G+ I
Sbjct: 235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291
Query: 272 PD--FIHNKRLSHLNL 285
+L+ +
Sbjct: 292 HPYCLEGCPKLARFEI 307
Score = 33.5 bits (77), Expect = 0.088
Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 15/167 (8%)
Query: 117 TSLKWIVLSNNYIKEFVIPNR----KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
+LK LS I + +P IE++ L L + T +K + +
Sbjct: 180 YNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIP-EN 236
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS----TLEFLDLENNRLTNI-NQC 227
+S + FR + + L N ++ I AF T ++ I C
Sbjct: 237 VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295
Query: 228 FRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDF 274
KL + + I + + +++ N +T+I
Sbjct: 296 LEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 38.8 bits (89), Expect = 0.001
Identities = 35/282 (12%), Positives = 79/282 (28%), Gaps = 28/282 (9%)
Query: 30 MSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQT 89
+ + + + + + +++ + L +
Sbjct: 49 AEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPS 108
Query: 90 LDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNL 149
L + + + + +F IE++DLS L
Sbjct: 109 LKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL 168
Query: 150 ISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS 209
+ LN +L + L ++L + L + + +I
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKKPRPNL-----KSLEIISGGLPDSVVEDI----LGSDLP 219
Query: 210 TLEFLDLE--------NNRLTNINQCFRN--LKKLKYLYLHNNNIEF---IQNNTFEHLV 256
LE L L + + F LK+L + + + + L
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279
Query: 257 NLKSISLSGNKLTR------IPDFIHNKRLSHLNLGYNFLNE 292
L+++ +S LT + K L +N+ YN+L++
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
Score = 36.9 bits (84), Expect = 0.006
Identities = 36/255 (14%), Positives = 83/255 (32%), Gaps = 34/255 (13%)
Query: 1 MDKSKNDEYVSGIQYGPCSENVQISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFI 60
+ + + I +++ I E ED + + LF
Sbjct: 88 DEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAH-FEGLFW 146
Query: 61 GENHIHQIENLNGFRSILWLNMD--SNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTS 118
G+ + E I W+ S +L + L + NN + + S
Sbjct: 147 GDIDFEEQE-------ISWIEQVDLSPVLDAMPLL--NNLKIKGTNNLSIGKKPRPNLKS 197
Query: 119 LK--WIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKL 176
L+ L ++ +++ + + ++EKL L + + + + + S ++ L
Sbjct: 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLY---VGVEDYGFDGDMNVFRPLFSKDRFPNL 254
Query: 177 NANTFRNLNVFRLYLKFNKISE--IHDFAFNGLNSTLEFLDLENNRLTN-----INQCFR 229
L + + + F + + LE +D+ LT+ +
Sbjct: 255 K----------WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304
Query: 230 NLKKLKYLYLHNNNI 244
+K LK++ + N +
Sbjct: 305 KIKHLKFINMKYNYL 319
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 38.2 bits (89), Expect = 0.003
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 9/159 (5%)
Query: 122 IVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTF 181
N + F + +E + + + +D+ KL+ F
Sbjct: 160 AYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL-TIEGKLDNADF 218
Query: 182 RNLNVF-----RLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLK 235
+ + + L + + I DF F L + L +N L I + F N +L
Sbjct: 219 KLIRDYMPNLVSLDISKTNATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276
Query: 236 YLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDF 274
++ I+ F NL+ + +G+K+T + D
Sbjct: 277 GTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315
Score = 37.1 bits (86), Expect = 0.006
Identities = 21/168 (12%), Positives = 50/168 (29%), Gaps = 11/168 (6%)
Query: 117 TSLKWIVLSNN--YIKEFVIPNRKHIEKLDLSNNLISTIN-----LNLNNTYYIKDLILS 169
+L+ ++LS I++ +++ + + ++ + +
Sbjct: 101 QTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160
Query: 170 YNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNS--TLEFLDLENN-RLTNINQ 226
Y ++ F ++ + ++ D + FL +E +
Sbjct: 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL 220
Query: 227 CFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDF 274
+ L L + N I + TF L I L + L I
Sbjct: 221 IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HNLKTIGQR 267
Score = 37.1 bits (86), Expect = 0.006
Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 24/191 (12%)
Query: 112 ELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNN------TYYIKD 165
E N +T L N + ++ LD+SN I + Y+ +
Sbjct: 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN 82
Query: 166 LILSYNQISKLNANTFRN---LNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
+ +Y S + + L L KI I D AF G ++ L+ +
Sbjct: 83 FVPAYA-FSNVVNGVTKGKQTLEKVILS---EKIKNIEDAAFKGCDN-LKICQIRKK-TA 136
Query: 223 NINQCFRNLKKLKYLYLHNNNIEF------IQNNTFEHLVNLKSISLSGNKLTRIPD--F 274
+ +++ + + ++ F L++ G + ++ D
Sbjct: 137 PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA-MGKLEDEIM 195
Query: 275 IHNKRLSHLNL 285
+ +N
Sbjct: 196 KAGLQPRDINF 206
Score = 35.1 bits (81), Expect = 0.023
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 194 NKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTF 252
+ + I F+ L+L + +T I F L+Y+ + I + + F
Sbjct: 259 HNLKTIGQRVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317
Query: 253 EHLVNLKSI 261
+ V K I
Sbjct: 318 GNGVPSKLI 326
Score = 32.4 bits (74), Expect = 0.18
Identities = 10/108 (9%), Positives = 33/108 (30%), Gaps = 3/108 (2%)
Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNNIEFIQNNTFEH 254
+ + + + +N+ N + + L+ + L I+ I++ F+
Sbjct: 65 SGKAGTYPNGKFYIYMANF-VPAYAFSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKG 122
Query: 255 LVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVEN 302
NLK + + ++ + + + ++
Sbjct: 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 36.9 bits (85), Expect = 0.006
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQN--NTFE 253
+ + + L+ + + N+ +L L L NN + + + + +
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193
Query: 254 HLVNLKSISLSGNKLTRIPDF--IHNKRLSHLNLGYN 288
NLK ++LSGN+L + I +L L L N
Sbjct: 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 35.3 bits (81), Expect = 0.025
Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 15/156 (9%)
Query: 143 LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLK-FNKISEIHD 201
++ + + +I + ++ + + F L +
Sbjct: 38 YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97
Query: 202 FAFNGLNSTLEFLDLENNRLTN--INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLV--- 256
A + + LE + L+ +T+ + ++ K K L L ++ E + +
Sbjct: 98 EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL--SSCEGFSTDGLAAIAATC 155
Query: 257 -NLKSISLSGNKLTRIPDFI------HNKRLSHLNL 285
NLK + L + + + L LN+
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 33.3 bits (76), Expect = 0.062
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 13/119 (10%)
Query: 145 LSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAF 204
L + +N+NN + +I L + ++ + L IS+
Sbjct: 36 LREDDTDLKEVNINNMKRVSK-----ERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 90
Query: 205 NGL---NSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
L + +L L++E+N LT + + + + N + N +
Sbjct: 91 IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 32.7 bits (75), Expect = 0.089
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 29/104 (27%)
Query: 208 NSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI---------EFIQNNTFE 253
N+ ++ + R + + + + LK L + +N I E +Q+NT
Sbjct: 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNT-- 121
Query: 254 HLVNLKSISLSGNKLTRIPD---------FIHNKRLSHLNLGYN 288
+L + + + + N L +
Sbjct: 122 ---SLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161
Score = 30.7 bits (70), Expect = 0.41
Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 30/148 (20%)
Query: 146 SNNLISTINLNLNNTYYIKDLILS-YNQISKLNANTF-----RNLNVFRLYLKFNKISEI 199
S ++ T+ NN ++++ L+ I N V + + + ++
Sbjct: 21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP 80
Query: 200 HDFAF-NGL--NSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNIEF----- 246
FA L N+TL+ L++E+N ++ + + ++ L L + N +
Sbjct: 81 VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140
Query: 247 ------IQNNTFEHLVNLKSISLSGNKL 268
++ NT L +
Sbjct: 141 MEIANMLEKNT-----TLLKFGYHFTQQ 163
Score = 28.4 bits (64), Expect = 2.0
Identities = 18/122 (14%), Positives = 30/122 (24%), Gaps = 36/122 (29%)
Query: 138 KHIEKLDLSNNLISTIN-------LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLY 190
+++K + + L +NNT +K L + N IS
Sbjct: 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNT--LKSLNVESNFISGSGILALVEA------ 116
Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLT-------NINQCFRNLKKLKYLYLHNNN 243
L+ N +L L ++N I L H
Sbjct: 117 LQSNT--------------SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162
Query: 244 IE 245
Sbjct: 163 QG 164
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 31.8 bits (72), Expect = 0.28
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 24/163 (14%)
Query: 117 TSLKWIVLSNNYIK----EFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
L+++ + + I E + K++ L + L+ I DL L N
Sbjct: 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRL---------VLLDREERITDLPLD-NG 427
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN--INQCFRN 230
+ L + L F YL+ ++++ + + ++ L ++ + + R
Sbjct: 428 VRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486
Query: 231 LKKLKYLYLHNNNIEFIQNNTFEHLV----NLKSISLSGNKLT 269
L+ L + V +L+ + + G + +
Sbjct: 487 CPNLQKLEMRGCCF---SERAIAAAVTKLPSLRYLWVQGYRAS 526
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.68
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 27/128 (21%)
Query: 166 LILSYNQIS---KLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLN---STLE----FLD 215
L LS+ + + +F +L +FNKI F + + E FL
Sbjct: 9 LTLSHGSLEHVLLVPTASF--FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 216 -----LENNRLTNINQCFRN-LKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT 269
+E +++ +Q L + + YL N+I H + K + + L
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI---------HALAAKLLQENDTTLV 117
Query: 270 RIPDFIHN 277
+ + I N
Sbjct: 118 KTKELIKN 125
Score = 28.9 bits (64), Expect = 3.2
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 146 SNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEI 199
+ L+ +N N+ N Y+ A R L+ L F K+ +I
Sbjct: 1837 TGWLVEIVNYNVENQQYV---------A----AGDLRALDTVTNVLNFIKLQKI 1877
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 29.5 bits (66), Expect = 1.6
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 207 LNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ-NNTFEHLVNLKSISLSG 265
L+ + + + + +++++ L N+ IE + L+++SL G
Sbjct: 68 LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127
Query: 266 NKLTR--IPDFIHNKRLSHLNLGY 287
+L+ + N L LNL
Sbjct: 128 LRLSDPIVNTLAKNSNLVRLNLSG 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 27.9 bits (62), Expect = 3.3
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 159 NTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFA------FNGLNSTLE 212
+ Y I+ + + + I + + L ++ K I D L ++
Sbjct: 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVE-KIRLCKCHYIEDGCLERLSQLENLQKSML 117
Query: 213 FLDLENNRLTNIN----QCFRNLKKLKYLYLHN 241
+++ + N+ + + LKYL+L +
Sbjct: 118 EMEIISC--GNVTDKGIIALHHFRNLKYLFLSD 148
Score = 27.9 bits (62), Expect = 3.6
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 226 QCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNK------LTRIPDFIHNKR 279
+ K++ + ++ I I + E L ++ I L L R+ + ++
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 280 -LSHLNLGYN 288
+ + +
Sbjct: 115 SMLEMEIISC 124
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG;
2.40A {Homo sapiens}
Length = 204
Score = 26.9 bits (59), Expect = 7.6
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 125 SNNYIKEFV--IPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR 182
S + F +P ++ I +N TYY+ D ++ + + T
Sbjct: 49 SGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVNQTYYVLD-VMCWRGHPFYDCQT-- 105
Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
FR Y +K+ E + +F+ L+N
Sbjct: 106 ---DFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKN 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,548,639
Number of extensions: 258428
Number of successful extensions: 5206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 955
Number of HSP's successfully gapped: 478
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)