RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11652
(325 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 60.8 bits (146), Expect = 5e-11
Identities = 44/193 (22%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 97 METLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINL 155
+E+L NN + + L +T+L + L+ N +K+ + + ++ LDL+NN IS +
Sbjct: 199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-A 257
Query: 156 NLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLD 215
L+ + +L L NQIS ++ + L +++ D + L +L
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLT 313
Query: 216 LENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFI 275
L N +++I+ +L KL+ L+ NN + + ++ +L N+ +S N+++ +
Sbjct: 314 LYFNNISDISP-VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 370
Query: 276 HNKRLSHLNLGYN 288
+ R++ L L
Sbjct: 371 NLTRITQLGLNDQ 383
Score = 50.0 bits (118), Expect = 2e-07
Identities = 48/216 (22%), Positives = 80/216 (37%), Gaps = 8/216 (3%)
Query: 79 WLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRK 138
L+ L +L +N + I +N +
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 219
Query: 139 HIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISE 198
++++L L+ N + I L + + DL L+ NQIS L A + L L N+IS
Sbjct: 220 NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN 277
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNL 258
I A T N NLK L YL L+ NNI I L L
Sbjct: 278 ISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 331
Query: 259 KSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELI 294
+ + + NK++ + + ++ L+ G+N +++L
Sbjct: 332 QRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT 367
Score = 43.1 bits (100), Expect = 2e-05
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 6/242 (2%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
+++TTL I I+ + ++ +N +N L + L + + + N
Sbjct: 44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI 103
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
L+ + I K++ L+ +TI+ + LS+
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 163
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
+ RL + NK+S+I A + L NN++++I
Sbjct: 164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES---LIATNNQISDITPLGIL-T 219
Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNE 292
L L L+ N ++ I T L NL + L+ N+++ + +L+ L LG N ++
Sbjct: 220 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 277
Query: 293 LI 294
+
Sbjct: 278 IS 279
Score = 36.5 bits (83), Expect = 0.004
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD 273
L +T+ +L ++ L I+ I E+L NL I+ S N+LT I
Sbjct: 27 TVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP 83
Query: 274 FIHNKRLSHLNLGYNF 289
+ +L + + N
Sbjct: 84 LKNLTKLVDILMNNNQ 99
Score = 35.0 bits (79), Expect = 0.010
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Query: 24 ISCILLMSAENEDNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMD 83
IS + ++A LT L + N+I I ++ + L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFA 337
Query: 84 SNLLQTLDSLP--KTMETLSVANNYLVNYLELNRMTSLKWIVLSNN 127
+N + + SL + LS +N + + L +T + + L++
Sbjct: 338 NNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
Score = 28.8 bits (63), Expect = 0.97
Identities = 11/73 (15%), Positives = 24/73 (32%)
Query: 222 TNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLS 281
T INQ F + + + + L + ++ + I + L+
Sbjct: 10 TPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLT 69
Query: 282 HLNLGYNFLNELI 294
+N N L ++
Sbjct: 70 QINFSNNQLTDIT 82
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 57.0 bits (136), Expect = 7e-10
Identities = 53/251 (21%), Positives = 97/251 (38%), Gaps = 16/251 (6%)
Query: 36 DNQIAELETANWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTL-DSLP 94
+N+I E++ ++ L + + L + N L+ L + +P
Sbjct: 40 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP 99
Query: 95 KTMETLSVANNYLV-------NYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSN 147
KT++ L V N + N L + L L ++ I+ K + + +++
Sbjct: 100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159
Query: 148 NLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGL 207
I+TI L + + +L L N+I+K++A + + LN D
Sbjct: 160 TNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217
Query: 208 NSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF------EHLVNLKSI 261
L L L NN+L + + K ++ +YLHNNNI I +N F + +
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277
Query: 262 SLSGNKLTRIP 272
SL N +
Sbjct: 278 SLFSNPVQYWE 288
Score = 45.4 bits (106), Expect = 4e-06
Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 7/177 (3%)
Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLN-LNNTYYIKDLILSYNQ 172
+ L NN I E N K++ L L NN IS I+ ++ L LS NQ
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
+ +L + L R++ F +E N F+ +K
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 233 KLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNF 289
KL Y+ + + NI I +L + L GNK+T++ + LG +F
Sbjct: 151 KLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Score = 37.7 bits (86), Expect = 0.001
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNNN 243
+ L L+ NKI+EI D F L L L L NN+++ I F L KL+ LYL N
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 244 IEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILESSIVEN 302
++ + + L L+ K+ R F ++ + LG N L +E+ +
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 44.4 bits (103), Expect = 9e-06
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
+LE L++ NN+L + L++L N++ + E NLK + + N L
Sbjct: 284 PSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP----ELPQNLKQLHVEYNPL 336
Query: 269 TRIPDFIHNKRLSHLNL 285
PD + + L +
Sbjct: 337 REFPDIPES--VEDLRM 351
Score = 42.1 bits (97), Expect = 5e-05
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 218 NNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN 277
N I L+ L + NN + + L+ + S N L +P+ N
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPELPQN 325
Query: 278 KRLSHLNLGYNFLNEL 293
L L++ YN L E
Sbjct: 326 --LKQLHVEYNPLREF 339
Score = 34.8 bits (78), Expect = 0.012
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ 248
L + NK+ E+ LE L N L + + +N LK L++ N +
Sbjct: 289 LNVSNNKLIELPALPPR-----LERLIASFNHLAEVPELPQN---LKQLHVEYNPLREF- 339
Query: 249 NNTFEHLVNLK 259
+ E + +L+
Sbjct: 340 PDIPESVEDLR 350
Score = 34.8 bits (78), Expect = 0.013
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 238 YLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILES 297
+ N + + +L+ +++S NKL +P L L +N L E+
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR--LERLIASFNHLAEVPELP 323
Query: 298 SIVENEIIDQNML 310
++ ++ N L
Sbjct: 324 QNLKQLHVEYNPL 336
Score = 33.3 bits (74), Expect = 0.033
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 114 NRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
+ SL+ + +SNN + E +E+L S N ++ + N +K L + YN +
Sbjct: 281 DLPPSLEELNVSNNKLIEL-PALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNPL 336
Query: 174 SKL 176
+
Sbjct: 337 REF 339
Score = 32.5 bits (72), Expect = 0.062
Identities = 17/92 (18%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 127 NYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNV 186
+ + +E+L++SNN + + ++ LI S+N ++++ +NL
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVP-ELPQNLKQ 328
Query: 187 FRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
L++++N + E D + ++E L + +
Sbjct: 329 --LHVEYNPLREFPD-----IPESVEDLRMNS 353
Score = 32.1 bits (71), Expect = 0.088
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 64 HIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLELNRMTSLKWIV 123
+ S+ LN+ +N L L +LP +E L + N+L EL +LK +
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPEL--PQNLKQLH 330
Query: 124 LSNNYIKEFVIPNRKHIEKLDLSN 147
+ N ++EF + +E L +++
Sbjct: 331 VEYNPLREFP-DIPESVEDLRMNS 353
Score = 30.2 bits (66), Expect = 0.35
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 232 KKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLN 291
++ L L+N + + E +L+S+ S N LT +P+ + L L + N L
Sbjct: 38 RQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPELPQS--LKSLLVDNNNLK 91
Query: 292 EL 293
L
Sbjct: 92 AL 93
Score = 29.8 bits (65), Expect = 0.49
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 46 NWSPEIQNKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANN 105
++ L L + N + ++ L + L N L + LP+ ++ L V N
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPELPQNLKQLHVEYN 334
Query: 106 YL 107
L
Sbjct: 335 PL 336
Score = 29.0 bits (63), Expect = 0.87
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 185 NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNI 244
L L +S + + + LE L N LT + + ++LK L + +
Sbjct: 39 QAHELELNNLGLSSLPELPPH-----LESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93
Query: 245 EFIQNNTFEH 254
+
Sbjct: 94 SDLPPLLEYL 103
Score = 26.3 bits (56), Expect = 5.7
Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 138 KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKIS 197
+ +L+L+N +S++ + ++ L+ S N +++L ++ L + N +
Sbjct: 38 RQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQ---SLKSLLVDNNNLK 91
Query: 198 EIHDF 202
+ D
Sbjct: 92 ALSDL 96
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 43.6 bits (101), Expect = 1e-05
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 6/198 (3%)
Query: 76 SILWLNMDSNLLQTL-DSLPKTMETLSVANNYL--VNYLELNRMTSLKWIVLSNNYIKEF 132
S L +N D L L LPK L ++ N L + L T L + L + +
Sbjct: 11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70
Query: 133 VIPNR-KHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF-RLY 190
+ + LDLS+N + ++ L + L +S+N+++ L R L LY
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 191 LKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNN 250
LK N++ + + NN L+ L L L N++ I
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 251 TFEHLVNLKSISLSGNKL 268
F L L GN
Sbjct: 191 FF-GSHLLPFAFLHGNPW 207
Score = 40.9 bits (94), Expect = 1e-04
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 5/176 (2%)
Query: 117 TSLKWIVLSNNYIKEF---VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQI 173
+ LS N + F + + +L+L ++ + ++ + L LS+NQ+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQL 89
Query: 174 SKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKK 233
L + L + FN+++ + A GL E N T K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 234 LKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP-DFIHNKRLSHLNLGYN 288
L+ L L NNN+ + L NL ++ L N L IP F + L L N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 39.3 bits (90), Expect = 3e-04
Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 21/197 (10%)
Query: 49 PEIQNKLTTLFIGENHIHQI--ENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNY 106
P++ T L + EN ++ L + + LN+D
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----------------LTK 69
Query: 107 LVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDL 166
L L + +L + N L S L +++L
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 167 ILSYNQISKLNANTFRNLNVFRLYLK-FNKISEIHDFAFNGLNSTLEFLDLENNRLTNIN 225
L N++ L N ++E+ NGL + L+ L L+ N L I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDTLLLQENSLYTIP 188
Query: 226 QCFRNLKKLKYLYLHNN 242
+ F L + +LH N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
Score = 35.8 bits (81), Expect = 0.004
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
++ ++ + LT + K L+L N + T L ++L +L
Sbjct: 10 ASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 269 TRIPDFIHNKRLSH 282
T++ L
Sbjct: 68 TKLQVDGTLPVLGT 81
Score = 29.7 bits (65), Expect = 0.48
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 251 TFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLNELILES 297
+ + ++ LT +P + K + L+L N L L +
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLAT 50
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 41.0 bits (95), Expect = 4e-05
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 6/141 (4%)
Query: 144 DLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFA 203
+L + + L ++ Y L + N+ + + + ++
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLRII 60
Query: 204 FNGLNSTLEFLDLENNRLTN---INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
+ L L+L NNRL ++ + LK L L N ++ + + L+
Sbjct: 61 EENIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119
Query: 261 ISLSGNKLTRIPDFIHNKRLS 281
+ L GN L+ +
Sbjct: 120 LWLDGNSLSDTFRDQSTYISA 140
Score = 27.1 bits (59), Expect = 2.1
Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 63 NHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTM---ETLSVANNYLVNYLELN----R 115
+ +L + LN S++ TL + + + +L+++NN L +++ +
Sbjct: 30 KGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK 89
Query: 116 MTSLKWIVLSNNYIK---EFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
+LK + LS N +K E +E+L L N +S + + YI + + +
Sbjct: 90 APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST--YISAIRERFPK 147
Query: 173 ISKLNANTFR 182
+ +L+ +
Sbjct: 148 LLRLDGHELP 157
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 40.3 bits (92), Expect = 1e-04
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 INQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIP 272
N F L + I + + E+L L++ S L ++P
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 33.7 bits (75), Expect = 0.021
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 199 IHDFAFNGLNSTLEFLDLENNRLTNI-NQCFRNLKKLKYLYLHNN 242
+ + F+G + LD+ R+ ++ + NLKKL+ +N
Sbjct: 192 LPNDVFHGASG-PVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
Score = 33.3 bits (74), Expect = 0.028
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 223 NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPD--FIHNKRL 280
N F + + NNN+E + N+ F + +S ++ +P + K+L
Sbjct: 168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 227
Query: 281 SHLNL 285
+
Sbjct: 228 RARST 232
Score = 29.5 bits (64), Expect = 0.50
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 214 LDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISL 263
+ +++T I + L + IQ F +L+ I +
Sbjct: 13 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60
Score = 26.0 bits (55), Expect = 7.0
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 169 SYNQISKLNANTFRNL-NVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNR 220
N + +L + F L + +I + + L L N +
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK-LRARSTYNLK 236
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 39.6 bits (91), Expect = 2e-04
Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 9/183 (4%)
Query: 104 NNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLNNTYY 162
+ + + N + S+ I+ +N+ IK I ++ KL L+ N ++ I N
Sbjct: 33 KKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNL 92
Query: 163 IKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLT 222
+ + + +L + + ++ N
Sbjct: 93 G------WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 146
Query: 223 NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSH 282
L KL L L +N I I L L+++ LS N ++ + K L
Sbjct: 147 TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDV 204
Query: 283 LNL 285
L L
Sbjct: 205 LEL 207
Score = 37.7 bits (86), Expect = 8e-04
Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 9/203 (4%)
Query: 65 IHQIENLNGFRSILWLNMDSNLLQTLDSLP--KTMETLSVANNYLVNYLELNRMTSLKWI 122
I QI + + F + N+ + + +++ + N+ + + + + ++ +
Sbjct: 14 IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73
Query: 123 VLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR 182
L+ N + + K + L L N + + L + +
Sbjct: 74 FLNGNKLT-----DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128
Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNN 242
L + T + + L KL+ LYL N
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188
Query: 243 NIEFIQNNTFEHLVNLKSISLSG 265
+I ++ L NL + L
Sbjct: 189 HISDLRA--LAGLKNLDVLELFS 209
Score = 29.6 bits (65), Expect = 0.36
Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 25/189 (13%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
N + + + I ++ + ++ L + N L +
Sbjct: 46 NSIDQIIANNSDIKSVQGIQYLPNV--------------------TKLFLNGNKLTDIKP 85
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
L + +L W+ L N +K+ K + + L + ++ L L N+
Sbjct: 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 145
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
I+ + + +L + ++I D + L+ L L N ++++ + LK
Sbjct: 146 IT----DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLK 200
Query: 233 KLKYLYLHN 241
L L L +
Sbjct: 201 NLDVLELFS 209
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 39.8 bits (91), Expect = 3e-04
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 3/166 (1%)
Query: 128 YIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYY-IKDLILSYNQISKLNANTFRNL-N 185
+ + L L + + L ++ L L N + L +TFR+L N
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 186 VFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIE 245
+ L+L N+IS + + AF GL+S L +N FR+L +L LYL NN+
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 246 FIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKR-LSHLNLGYNFL 290
+ L L+ + L+ N L + +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 38.1 bits (87), Expect = 7e-04
Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 7/191 (3%)
Query: 95 KTMETLSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTIN 154
+ TLS + + + +L + L +N I + ++ L L + N
Sbjct: 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-----TDLAPLKNLTKITELELSGN 95
Query: 155 LNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFL 214
N + + ++ L T
Sbjct: 96 PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155
Query: 215 DLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDF 274
N + NL KL L +N I I L NL + L N+++ +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL 213
Query: 275 IHNKRLSHLNL 285
+ L + L
Sbjct: 214 ANTSNLFIVTL 224
Score = 36.5 bits (83), Expect = 0.002
Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 3/189 (1%)
Query: 53 NKLTTLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLE 112
+ +TTL + IE + +++ L + N + L L + + +
Sbjct: 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV 100
Query: 113 LNRMTSLKWIVLSNNYIKEFVIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQ 172
L + + + L + ++ I LS
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 160
Query: 173 ISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLK 232
+ N+ +L ++I D + L + L+NN+++++ N
Sbjct: 161 AQVSDLTPLA--NLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SPLANTS 217
Query: 233 KLKYLYLHN 241
L + L N
Sbjct: 218 NLFIVTLTN 226
Score = 33.1 bits (74), Expect = 0.027
Identities = 25/196 (12%), Positives = 62/196 (31%), Gaps = 9/196 (4%)
Query: 100 LSVANNYLVNYLELNRMTSLKWIVLSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLN 158
++ + + + + + + + + + ++ L+L +N I+ + N
Sbjct: 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKN 83
Query: 159 NTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
T + K + ++ L L +I+++ A L
Sbjct: 84 LTKI--TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL------Y 135
Query: 219 NRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK 278
L I YL N + +L L ++ NK++ I
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLP 195
Query: 279 RLSHLNLGYNFLNELI 294
L ++L N ++++
Sbjct: 196 NLIEVHLKNNQISDVS 211
Score = 31.2 bits (69), Expect = 0.14
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 222 TNINQCF--RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKR 279
T IN F L + +N+ T L + ++S G +T I +
Sbjct: 7 TAINVIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLNN 64
Query: 280 LSHLNLGYNFLN 291
L L L N +
Sbjct: 65 LIGLELKDNQIT 76
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 36.6 bits (84), Expect = 8e-04
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 124 LSNNYIKEF-VIPNRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFR 182
L++ + + + LDLS+N + + L ++ L S N + ++
Sbjct: 5 LAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL 64
Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL 234
+ L L N++ + L L+L+ N L L ++
Sbjct: 65 P-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Score = 35.1 bits (80), Expect = 0.003
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 26/112 (23%)
Query: 189 LYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKL-------------- 234
L+L ++ + + LDL +NRL + L+ L
Sbjct: 3 LHLAHKDLTVLCHL---EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 235 --------KYLYLHNNNIEFIQN-NTFEHLVNLKSISLSGNKLTRIPDFIHN 277
+ L L NN ++ L ++L GN L +
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111
Score = 28.9 bits (64), Expect = 0.38
Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 57 TLFIGENHIHQIENLNGFRSILWLNMDSNLLQTLDSLPKTMETLSVANNYLVNYLEL--- 113
L + + + +L + L++ N L+ L + L V +
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 114 NRMTSLKWIVLSNNYIKEFVIP----NRKHIEKLDLSNNLISTI 153
+ L+ ++L NN +++ + + L+L N +
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 28.1 bits (62), Expect = 0.68
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 235 KYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHN 277
+ L+L + ++ + + E L+ + + LS N+L +P +
Sbjct: 1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAA 41
Score = 26.6 bits (58), Expect = 2.0
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 259 KSISLSGNKLTRIPDFIHNKRLSHLNLGYNFLN 291
+ + L+ LT + ++HL+L +N L
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR 33
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 36.7 bits (83), Expect = 0.003
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 225 NQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFIHNKRLSHL 283
K L L L NN I L L S+++S N L IP + +R
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 284 NLGYN 288
N
Sbjct: 297 AYANN 301
Score = 34.0 bits (76), Expect = 0.021
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 215 DLENNRLT-NINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
DL NNR+ + Q LK L L + NN+ + +L + + NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNLQRFDVSAYANNKC 303
Score = 32.8 bits (73), Expect = 0.051
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 190 YLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNN 243
L+ N+I L L L++ N L NL++ NN
Sbjct: 250 DLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 31.3 bits (69), Expect = 0.14
Identities = 36/248 (14%), Positives = 81/248 (32%), Gaps = 15/248 (6%)
Query: 70 NLNGFRSILWLNMDSNLLQTLDSLPKTMETLS---------VANNYLVNYLELNRMTSLK 120
+ L++ L +P ++ L + N + ++T L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 121 WIVLSNNYIKEFVIPNRKHIEKL----DLSNNLISTINLNLNNTYYIKDLILSYNQISKL 176
++ +++ + + I+ L N L T+ ++++ + + N+IS
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 177 NANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKY 236
+++ + + + ++ N L F+DL N L K
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 237 LYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLT-RIPDFIHN-KRLSHLNLGYNFLNELI 294
N NL + L N++ +P + K L LN+ +N L I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 295 LESSIVEN 302
+ ++
Sbjct: 285 PQGGNLQR 292
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 35.3 bits (80), Expect = 0.004
Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKL 268
LDL ++ I L + + +N I + F L LK++ ++ N++
Sbjct: 18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI 75
Query: 269 TRIPDFIHN--KRLSHLNLGYNFLNELILESSIVENEIIDQNMLFNSNAVMEDQFSMR 324
RI + + L+ L L N L EL + + + + + + + +
Sbjct: 76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Score = 29.5 bits (65), Expect = 0.36
Identities = 20/126 (15%), Positives = 34/126 (26%)
Query: 136 NRKHIEKLDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNK 195
N +LDL I I + S N+I KL+ L
Sbjct: 16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI 75
Query: 196 ISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHL 255
+ T L + +LK L YL + N + ++ +
Sbjct: 76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135
Query: 256 VNLKSI 261
+ +
Sbjct: 136 YKVPQV 141
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 33.5 bits (75), Expect = 0.019
Identities = 24/185 (12%), Positives = 56/185 (30%), Gaps = 9/185 (4%)
Query: 100 LSVANNYLVNYLELNRMTSLKWIVLSNNYIKEFV-IPNRKHIEKLDLSNNLISTINLNLN 158
+ + + + + + + IK + ++ +++ SNN ++ I N
Sbjct: 23 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKN 82
Query: 159 NTYYIKDLILSYNQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLEN 218
T + L+ + NL L+ + N L+
Sbjct: 83 LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN--------LNRLE 134
Query: 219 NRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNK 278
I+ L+ ++ + +L L+ + +S NK++ I
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 279 RLSHL 283
L L
Sbjct: 195 NLESL 199
Score = 27.7 bits (60), Expect = 1.7
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 222 TNINQCF--RNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKR 279
T INQ F L + L N+ + L + ++ + I +
Sbjct: 6 TPINQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGVEYLNN 63
Query: 280 LSHLNLGYNF 289
L+ +N N
Sbjct: 64 LTQINFSNNQ 73
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 32.1 bits (71), Expect = 0.043
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 209 STLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNN-IEFIQNNTFEHLVNLKSISLSGNK 267
L + + + L LY+ N ++ ++ L L+++++ +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 268 LTRIPDFIHNKRLSHLNLGYNFLNELILESSIVENEIIDQNMLFN 312
L + + L +F L V+ + + +L
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112
Score = 27.8 bits (60), Expect = 1.3
Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 2/131 (1%)
Query: 141 EKLDLSNNLISTINLNLNNTYYIKDLILSYNQ-ISKLNANTFRNLNVFRLYLKFNKISEI 199
L + + +L + +L + Q + L R L R
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 200 HDFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNT-FEHLVNL 258
L L+L N L +++ L+ L L N + +
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130
Query: 259 KSISLSGNKLT 269
+ KL
Sbjct: 131 GLGGVPEQKLQ 141
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 32.1 bits (71), Expect = 0.060
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 143 LDLSNNLISTINLNLNNTYYIKDLILSYNQISKLNANTFRNLNVF--RLYLKFNKISEIH 200
+D + + I ++ +L+L+ N++ +++++ +L LK N+++ I
Sbjct: 13 VDCTGRGLKEIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70
Query: 201 DFAFNGLNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKS 260
AF G + E EN N+ F L +LK L L++N I + +FEHL +L S
Sbjct: 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130
Query: 261 ISLSGNKLTRIPDFIHNKRLSHLN 284
++L+ N
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKK 154
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 32.6 bits (72), Expect = 0.061
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 183 NLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYL 237
+L++ L ++ ++S+ L + + L++ LT I+ R L L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 238 YLHNNNI-----EFIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLSHLN 284
L +N + + ++ +SL LT + + L L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 112
Score = 29.9 bits (65), Expect = 0.42
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 200 HDFAFNGLNSTLEFLDLENNRLTN-----INQCFRNLKKLKYLYLHNNNI-----EFIQN 249
S L L L + +++ + L+ L L NN + +
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
Query: 250 NTFEHLVNLKSISLSGNKLTRI 271
+ + L+ + L +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEE 441
Score = 26.1 bits (55), Expect = 7.9
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 113 LNRMTSLKWIVLSNNYIKEF-------VIPNRKHIEKLDLSNNLISTINLNL------NN 159
+ L+ + L++ + + + + +LDLSNN + +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 160 TYYIKDLILSYNQISKLNANTFRNL 184
++ L+L S+ + + L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 31.2 bits (69), Expect = 0.12
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 209 STLEFLDLENN--RLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTFEHLVNLKSISLSGN 266
+ E ++L + ++ LK K+L L NNIE I + + NL+ +SL N
Sbjct: 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN 80
Query: 267 KLTRIPDFIHNKRLSH 282
+ +I +
Sbjct: 81 LIKKIENLDAVADTLE 96
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 30.2 bits (66), Expect = 0.35
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 227 CFRNLKKLKYLYLHNNNIE-----FIQNNTFEHLVNLKSISLSGNKLTRIPDFIHNKRLS 281
L+ L L N IE ++ E + +L + L+GN+ + D + R
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
Query: 282 HLNLGYNFLNEL 293
G L+EL
Sbjct: 328 FSTRGRGELDEL 339
Score = 27.2 bits (58), Expect = 3.1
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 4/71 (5%)
Query: 211 LEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQNNTF----EHLVNLKSISLSGN 266
L+ + ++ +K + L N I +L+ S
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 267 KLTRIPDFIHN 277
R+ D I
Sbjct: 70 FTGRVKDEIPE 80
Score = 26.8 bits (57), Expect = 4.1
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 171 NQISKLNANTFRNLNVFRLYLKFNKISEIHDFAFNGLNSTLEFLDLENNRLTNINQCFRN 230
+ SKL + L + ++ + + + + L FL+L NR + +
Sbjct: 265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM-PDLLFLELNGNRFSEEDDVVDE 323
Query: 231 LKKLKYLYLHNNNIE 245
++++ E
Sbjct: 324 IREVFSTRGRGELDE 338
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 27.8 bits (60), Expect = 1.6
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 207 LNSTLEFLDLENNRLTNINQCFRNLKKLKYLYLHNNNIEFIQ-NNTFEHLVNLKSISLSG 265
L+ + + + + +++++ L N+ IE + L+++SL G
Sbjct: 21 LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80
Query: 266 NKLTR--IPDFIHNKRLSHLNLGYNF 289
+L+ + N L LNL
Sbjct: 81 LRLSDPIVNTLAKNSNLVRLNLSGCS 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,120,046
Number of extensions: 51651
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 118
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)