BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11659
(684 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WIX|A Chain A, The Solution Structure Of Rsgi Ruh-026, Conserved Domain
Of Hook1 Protein From Mouse
Length = 164
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Query: 11 LCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWR 70
LC+ L+ WLQTF +P Q + +T+GV MAQ LHQI WFSE WL++IK D+G +NWR
Sbjct: 10 LCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVG-DNWR 68
Query: 71 LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCN 130
+K SNLKK+ GI Y+ E+ Q + E D+++I E D EL RL+QLILGCA+NC
Sbjct: 69 IKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCE 128
Query: 131 RKQNYITKIMELEESVQQVIMQSIQELENLHGST 164
+KQ +I IM LEESVQ V+M +IQEL + G +
Sbjct: 129 KKQEHIKNIMTLEESVQHVVMTAIQELMSKSGPS 162
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 21/171 (12%)
Query: 139 IMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCME 198
I +LE++ + L+N+ + L+ +++P V + +DA DQ++ R
Sbjct: 20 IAKLEKAPVFAFATATDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQIS-RERA 78
Query: 199 LDMQVSMLQEEKSCLVEEKRRLEERFQENF------------VEPTNKGNSSMRRQMDAL 246
L++ +L++EK+ V + + + N+ +E + + R MD+L
Sbjct: 79 LELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138
Query: 247 KEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
E K ++ + EI K L +LEE RY ++ D+
Sbjct: 139 AERWLKHKTITFE-----EIAGKGKNQLTFNQIALEEA---GRYAAEDADV 181
>pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
Length = 605
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 139 IMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCME 198
I +LE++ L+N+ + L+ +++P V + +DA DQ++ R
Sbjct: 20 IAKLEKAPVFAFATETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQIS-RERA 78
Query: 199 LDMQVSMLQEEKSCLVEEKRRLEERFQENF------------VEPTNKGNSSMRRQMDAL 246
L++ +L++EK+ V + + + N+ +E + + R MD+L
Sbjct: 79 LELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138
Query: 247 KEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
E K ++ + EI K L +LEE RY ++ D+
Sbjct: 139 AERWLKHKTITFE-----EIAGKGKNQLTFNQIALEEA---GRYAAEDADV 181
>pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
Polymerase I Complexed With DTMP
pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
Polymerase I Complexed With Deoxynucleoside Triphosphate
And Pyrophosphate
Length = 605
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 157 LENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEE 216
L+N+ + L+ +++P V + +DA DQ++ R L++ +L++EK+ V +
Sbjct: 38 LDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQIS-RERALELLKPLLEDEKALKVGQ 96
Query: 217 KRRLEERFQENF------------VEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKL 264
+ + N+ +E + + R MD+L E K ++ +
Sbjct: 97 NLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFE----- 151
Query: 265 EIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
EI K L +LEE RY ++ D+
Sbjct: 152 EIAGKGKNQLTFNQIALEEA---GRYAAEDADV 181
>pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (e.c.2.7.7.7) Mutant/dna
Complex
pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 157 LENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEE 216
L+N+ + L+ +++P V + +DA DQ++ R L++ +L++EK+ V +
Sbjct: 38 LDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQIS-RERALELLKPLLEDEKALKVGQ 96
Query: 217 KRRLEERFQENF------------VEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKL 264
+ + N+ +E + + R MD+L E K ++ +
Sbjct: 97 NLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFE----- 151
Query: 265 EIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
EI K L +LEE RY ++ D+
Sbjct: 152 EIAGKGKNQLTFNQIALEEA---GRYAAEDADV 181
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 564 QKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA 598
Q DS ++D E R YIEK N + P Q++A
Sbjct: 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,847,443
Number of Sequences: 62578
Number of extensions: 661420
Number of successful extensions: 2434
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 2222
Number of HSP's gapped (non-prelim): 295
length of query: 684
length of database: 14,973,337
effective HSP length: 105
effective length of query: 579
effective length of database: 8,402,647
effective search space: 4865132613
effective search space used: 4865132613
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)