Query psy11659
Match_columns 684
No_of_seqs 464 out of 1406
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 15:37:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05622 HOOK: HOOK protein; 100.0 1E-112 2E-117 989.8 12.8 671 4-683 1-708 (713)
2 KOG4643|consensus 99.9 7.6E-22 1.6E-26 218.9 60.4 296 74-391 2-334 (1195)
3 KOG0161|consensus 99.5 3E-09 6.6E-14 130.9 57.9 427 175-627 1043-1524(1930)
4 KOG0161|consensus 99.5 1.3E-09 2.7E-14 134.2 54.4 398 188-626 1246-1678(1930)
5 PRK02224 chromosome segregatio 99.3 1.9E-06 4.1E-11 104.5 61.0 15 599-613 625-639 (880)
6 PRK02224 chromosome segregatio 99.2 9.1E-06 2E-10 98.6 58.3 29 599-627 651-679 (880)
7 TIGR02168 SMC_prok_B chromosom 99.2 1.5E-06 3.4E-11 108.6 50.9 58 530-587 980-1041(1179)
8 PRK03918 chromosome segregatio 99.2 4.4E-05 9.6E-10 92.7 61.9 34 259-292 256-289 (880)
9 TIGR02169 SMC_prok_A chromosom 99.2 2E-06 4.3E-11 107.6 50.6 77 499-586 954-1030(1164)
10 PF01576 Myosin_tail_1: Myosin 99.1 6.2E-12 1.3E-16 148.7 0.0 394 183-627 183-621 (859)
11 COG1196 Smc Chromosome segrega 99.1 8.1E-06 1.8E-10 101.2 52.2 80 500-590 946-1025(1163)
12 TIGR00606 rad50 rad50. This fa 99.1 0.00015 3.2E-09 91.2 60.5 89 179-267 583-672 (1311)
13 TIGR00606 rad50 rad50. This fa 99.0 0.00024 5.2E-09 89.4 61.2 43 448-498 824-866 (1311)
14 PRK03918 chromosome segregatio 99.0 0.00025 5.4E-09 86.2 60.2 14 111-124 143-156 (880)
15 KOG4674|consensus 99.0 0.00012 2.7E-09 89.8 53.7 164 453-625 1167-1338(1822)
16 TIGR02168 SMC_prok_B chromosom 99.0 4.5E-05 9.7E-10 95.6 50.7 58 529-589 990-1047(1179)
17 PF10174 Cast: RIM-binding pro 98.9 0.00014 3E-09 84.4 48.5 48 539-586 671-718 (775)
18 PF10174 Cast: RIM-binding pro 98.9 0.00045 9.6E-09 80.3 53.7 47 181-227 122-168 (775)
19 KOG0971|consensus 98.9 5E-05 1.1E-09 85.6 40.7 56 599-654 530-593 (1243)
20 PF07888 CALCOCO1: Calcium bin 98.9 0.00031 6.8E-09 77.5 47.9 12 77-88 44-55 (546)
21 KOG0976|consensus 98.9 0.00037 8E-09 77.8 53.6 122 503-627 386-509 (1265)
22 PF01576 Myosin_tail_1: Myosin 98.8 8.7E-10 1.9E-14 130.7 0.0 175 451-627 262-466 (859)
23 PRK01156 chromosome segregatio 98.7 0.002 4.4E-08 78.3 64.7 32 389-420 412-443 (895)
24 COG1196 Smc Chromosome segrega 98.7 0.00082 1.8E-08 83.6 49.3 40 541-580 972-1011(1163)
25 KOG0933|consensus 98.7 0.00051 1.1E-08 79.0 42.2 162 259-420 681-849 (1174)
26 PF07888 CALCOCO1: Calcium bin 98.7 0.001 2.3E-08 73.5 42.3 39 184-222 147-185 (546)
27 KOG4643|consensus 98.6 0.0034 7.4E-08 72.4 49.8 145 357-515 277-427 (1195)
28 PRK04778 septation ring format 98.6 0.0034 7.3E-08 72.1 52.9 36 529-564 472-508 (569)
29 KOG4674|consensus 98.5 0.01 2.2E-07 73.6 56.6 181 234-420 689-885 (1822)
30 PF00261 Tropomyosin: Tropomyo 98.5 0.0011 2.3E-08 67.4 33.3 224 182-417 3-228 (237)
31 KOG0976|consensus 98.4 0.0061 1.3E-07 68.5 49.8 43 458-508 321-363 (1265)
32 KOG0971|consensus 98.4 0.0074 1.6E-07 68.8 47.4 19 575-593 529-547 (1243)
33 PF00038 Filament: Intermediat 98.4 0.0043 9.2E-08 65.9 38.0 59 363-421 193-251 (312)
34 PRK04778 septation ring format 98.4 0.0087 1.9E-07 68.8 43.9 31 235-265 99-129 (569)
35 PRK01156 chromosome segregatio 98.4 0.016 3.5E-07 70.6 63.3 9 8-16 36-44 (895)
36 KOG0977|consensus 98.3 0.0061 1.3E-07 67.5 37.0 72 475-550 296-367 (546)
37 KOG0612|consensus 98.3 0.017 3.7E-07 68.3 47.4 58 239-296 492-549 (1317)
38 KOG0977|consensus 98.3 0.0043 9.3E-08 68.7 34.3 81 337-420 109-189 (546)
39 PF12128 DUF3584: Protein of u 98.2 0.042 9.2E-07 68.8 62.1 42 312-353 344-385 (1201)
40 PF00038 Filament: Intermediat 98.2 0.017 3.7E-07 61.3 37.5 51 369-419 86-136 (312)
41 KOG0250|consensus 98.1 0.011 2.4E-07 69.4 35.2 248 240-515 206-462 (1074)
42 PF09730 BicD: Microtubule-ass 98.1 0.044 9.5E-07 63.3 43.6 75 327-404 97-171 (717)
43 PF00261 Tropomyosin: Tropomyo 98.0 0.011 2.3E-07 60.1 29.1 160 235-420 2-161 (237)
44 COG1340 Uncharacterized archae 98.0 0.021 4.6E-07 58.3 30.3 44 357-400 199-242 (294)
45 KOG0996|consensus 98.0 0.073 1.6E-06 63.0 55.7 113 188-300 385-514 (1293)
46 KOG0995|consensus 98.0 0.046 1E-06 60.2 45.4 142 264-405 237-379 (581)
47 PRK04863 mukB cell division pr 98.0 0.13 2.8E-06 64.8 42.3 113 364-499 368-480 (1486)
48 PHA02562 46 endonuclease subun 97.9 0.019 4.1E-07 66.1 32.7 28 194-221 174-201 (562)
49 PF06160 EzrA: Septation ring 97.9 0.092 2E-06 60.2 55.7 164 449-623 309-487 (560)
50 KOG4673|consensus 97.9 0.083 1.8E-06 58.9 45.1 176 188-376 403-598 (961)
51 KOG0999|consensus 97.9 0.071 1.5E-06 58.0 43.1 117 336-470 102-218 (772)
52 PF12128 DUF3584: Protein of u 97.8 0.2 4.3E-06 62.9 59.8 24 600-623 770-793 (1201)
53 KOG0933|consensus 97.8 0.13 2.8E-06 60.1 45.9 111 301-414 767-878 (1174)
54 PF09726 Macoilin: Transmembra 97.8 0.026 5.7E-07 65.6 30.1 67 449-516 590-656 (697)
55 PRK04863 mukB cell division pr 97.8 0.27 5.9E-06 62.1 51.7 103 527-640 605-707 (1486)
56 KOG0946|consensus 97.7 0.1 2.2E-06 59.4 31.4 17 115-131 545-562 (970)
57 PF05622 HOOK: HOOK protein; 97.7 1E-05 2.2E-10 95.3 0.0 43 582-625 558-600 (713)
58 KOG0994|consensus 97.6 0.28 6.1E-06 57.9 34.2 68 346-413 1677-1744(1758)
59 PF05557 MAD: Mitotic checkpoi 97.6 0.00063 1.4E-08 80.4 13.8 33 600-632 605-637 (722)
60 PHA02562 46 endonuclease subun 97.6 0.18 3.8E-06 58.2 33.7 92 328-419 307-398 (562)
61 PF05701 WEMBL: Weak chloropla 97.6 0.23 5.1E-06 56.4 54.4 16 600-615 462-477 (522)
62 PF15070 GOLGA2L5: Putative go 97.6 0.26 5.7E-06 56.6 46.7 102 537-651 412-523 (617)
63 PF09726 Macoilin: Transmembra 97.6 0.11 2.4E-06 60.5 31.1 86 197-282 421-508 (697)
64 KOG0964|consensus 97.5 0.33 7.2E-06 56.6 41.3 48 373-420 329-376 (1200)
65 PF05557 MAD: Mitotic checkpoi 97.5 0.0011 2.3E-08 78.6 14.4 107 481-587 502-640 (722)
66 COG1340 Uncharacterized archae 97.5 0.15 3.3E-06 52.3 33.9 58 360-417 181-238 (294)
67 PRK11637 AmiB activator; Provi 97.5 0.19 4.1E-06 55.8 31.1 27 194-220 54-80 (428)
68 PF00307 CH: Calponin homology 97.5 0.0011 2.4E-08 58.2 10.7 97 13-122 2-103 (108)
69 KOG4673|consensus 97.5 0.29 6.4E-06 54.8 47.8 60 448-515 589-656 (961)
70 PF14662 CCDC155: Coiled-coil 97.4 0.13 2.8E-06 49.2 28.1 78 269-346 43-121 (193)
71 PRK11637 AmiB activator; Provi 97.3 0.35 7.5E-06 53.7 30.4 16 203-218 70-85 (428)
72 PF12718 Tropomyosin_1: Tropom 97.3 0.07 1.5E-06 49.5 20.8 16 338-353 77-92 (143)
73 KOG0612|consensus 97.3 0.69 1.5E-05 55.5 41.8 13 49-61 240-252 (1317)
74 KOG0996|consensus 97.3 0.69 1.5E-05 55.2 45.8 53 68-127 81-136 (1293)
75 PF05701 WEMBL: Weak chloropla 97.0 0.93 2E-05 51.6 53.5 18 449-466 368-385 (522)
76 KOG0994|consensus 97.0 1.2 2.7E-05 52.8 50.5 93 205-300 1198-1295(1758)
77 KOG0964|consensus 97.0 1.2 2.7E-05 52.1 50.7 80 326-408 417-496 (1200)
78 PF12718 Tropomyosin_1: Tropom 97.0 0.18 4E-06 46.8 19.8 63 358-420 73-135 (143)
79 KOG0995|consensus 96.9 1 2.2E-05 50.1 52.1 60 238-300 263-322 (581)
80 PF09730 BicD: Microtubule-ass 96.9 1.4 3.1E-05 51.2 44.9 52 451-510 270-321 (717)
81 COG1579 Zn-ribbon protein, pos 96.8 0.46 1E-05 47.6 22.5 26 326-351 102-127 (239)
82 PF15070 GOLGA2L5: Putative go 96.8 1.6 3.4E-05 50.4 46.3 25 491-515 416-440 (617)
83 PF15619 Lebercilin: Ciliary p 96.7 0.66 1.4E-05 45.4 25.5 27 195-221 13-39 (194)
84 PF09789 DUF2353: Uncharacteri 96.7 0.98 2.1E-05 47.3 33.9 191 199-417 28-227 (319)
85 KOG0250|consensus 96.7 2.3 5E-05 50.9 54.9 38 555-592 757-794 (1074)
86 PF04849 HAP1_N: HAP1 N-termin 96.7 1 2.2E-05 46.8 27.1 20 447-466 161-180 (306)
87 PF06160 EzrA: Septation ring 96.6 1.9 4.2E-05 49.5 52.4 17 576-592 532-548 (560)
88 PF14662 CCDC155: Coiled-coil 96.6 0.73 1.6E-05 44.2 26.4 74 199-274 27-100 (193)
89 PF14915 CCDC144C: CCDC144C pr 96.6 1.1 2.3E-05 46.0 39.7 99 357-466 136-234 (305)
90 PF09789 DUF2353: Uncharacteri 96.6 1.2 2.7E-05 46.5 27.6 93 379-497 133-225 (319)
91 PF05667 DUF812: Protein of un 96.5 2.2 4.8E-05 49.0 31.6 89 313-402 440-528 (594)
92 PF09728 Taxilin: Myosin-like 96.4 1.6 3.4E-05 46.1 37.4 65 394-471 203-269 (309)
93 PF06294 DUF1042: Domain of Un 96.3 0.0059 1.3E-07 57.6 5.2 59 15-79 1-60 (158)
94 KOG0999|consensus 96.3 2.4 5.2E-05 46.7 47.5 74 327-403 170-243 (772)
95 KOG1029|consensus 96.2 3.1 6.8E-05 47.6 35.7 36 386-421 430-465 (1118)
96 PF04849 HAP1_N: HAP1 N-termin 96.2 1.9 4E-05 44.8 23.1 123 283-418 164-287 (306)
97 PLN02939 transferase, transfer 96.2 1.6 3.4E-05 52.4 25.4 28 178-205 154-181 (977)
98 KOG4593|consensus 96.2 3.3 7.1E-05 47.2 50.8 25 491-515 386-410 (716)
99 PF10473 CENP-F_leu_zip: Leuci 96.1 1 2.3E-05 41.4 18.5 58 451-516 8-65 (140)
100 KOG0978|consensus 96.1 3.9 8.4E-05 47.2 43.7 28 127-155 181-208 (698)
101 PF09728 Taxilin: Myosin-like 96.0 2.5 5.5E-05 44.6 33.1 41 180-220 64-104 (309)
102 PF12325 TMF_TATA_bd: TATA ele 95.9 0.63 1.4E-05 41.7 15.6 92 237-334 19-110 (120)
103 TIGR02680 conserved hypothetic 95.8 8.5 0.00018 49.1 32.8 30 193-222 748-777 (1353)
104 PF10473 CENP-F_leu_zip: Leuci 95.8 1.5 3.2E-05 40.4 20.5 95 178-284 8-102 (140)
105 KOG1029|consensus 95.8 5 0.00011 46.1 38.1 29 391-419 470-498 (1118)
106 COG1579 Zn-ribbon protein, pos 95.8 2.5 5.4E-05 42.5 21.8 52 323-377 92-143 (239)
107 PF05667 DUF812: Protein of un 95.7 5.3 0.00011 46.0 33.7 30 24-53 19-51 (594)
108 KOG0980|consensus 95.7 6 0.00013 46.3 30.1 54 357-410 493-546 (980)
109 PRK09039 hypothetical protein; 95.6 1.5 3.3E-05 47.0 20.2 52 525-576 116-167 (343)
110 cd00014 CH Calponin homology d 95.5 0.05 1.1E-06 47.5 7.3 93 12-119 3-99 (107)
111 TIGR02680 conserved hypothetic 95.5 11 0.00025 48.0 34.3 34 194-227 742-775 (1353)
112 PF14915 CCDC144C: CCDC144C pr 95.3 4 8.8E-05 41.9 37.8 47 357-403 62-108 (305)
113 KOG0963|consensus 95.3 6.7 0.00015 44.2 42.4 28 599-626 388-415 (629)
114 PRK09039 hypothetical protein; 95.3 5.2 0.00011 42.9 23.8 25 357-381 143-167 (343)
115 KOG0980|consensus 95.2 8.5 0.00018 45.1 34.4 15 76-90 228-242 (980)
116 PF09755 DUF2046: Uncharacteri 95.2 4.6 9.9E-05 41.9 35.8 50 237-286 23-72 (310)
117 PF09755 DUF2046: Uncharacteri 95.2 4.6 0.0001 41.9 35.4 40 260-302 25-64 (310)
118 COG5185 HEC1 Protein involved 95.1 6.1 0.00013 42.9 41.8 68 283-353 292-363 (622)
119 KOG0982|consensus 94.9 6.5 0.00014 42.2 23.6 38 188-225 216-260 (502)
120 COG4477 EzrA Negative regulato 94.8 8.1 0.00018 42.8 45.4 155 449-627 312-480 (570)
121 KOG1899|consensus 94.8 2.3 4.9E-05 47.5 18.4 187 448-674 106-304 (861)
122 PF05483 SCP-1: Synaptonemal c 94.7 9.9 0.00021 43.3 60.0 38 359-396 350-387 (786)
123 PF07111 HCR: Alpha helical co 94.7 11 0.00023 43.3 51.7 29 199-227 247-275 (739)
124 smart00787 Spc7 Spc7 kinetocho 94.5 7.5 0.00016 41.1 22.7 55 366-420 226-284 (312)
125 smart00033 CH Calponin homolog 94.3 0.11 2.4E-06 44.8 6.3 68 13-86 3-74 (103)
126 PF13514 AAA_27: AAA domain 94.2 20 0.00044 44.9 46.6 43 600-642 549-591 (1111)
127 PF05911 DUF869: Plant protein 94.1 16 0.00034 43.3 34.5 51 540-590 259-309 (769)
128 PF05010 TACC: Transforming ac 94.0 6.8 0.00015 38.6 25.1 113 525-642 90-202 (207)
129 PF08317 Spc7: Spc7 kinetochor 94.0 10 0.00022 40.5 28.7 64 357-420 222-289 (325)
130 PF05483 SCP-1: Synaptonemal c 93.9 15 0.00032 42.0 56.4 14 453-466 534-547 (786)
131 PF15619 Lebercilin: Ciliary p 93.8 7.3 0.00016 38.1 25.5 21 396-416 167-187 (194)
132 PF08614 ATG16: Autophagy prot 93.7 0.69 1.5E-05 45.4 11.1 65 328-395 117-181 (194)
133 KOG1853|consensus 93.7 8.2 0.00018 38.5 22.1 29 368-396 136-164 (333)
134 KOG0979|consensus 93.7 20 0.00043 42.9 30.7 89 326-417 261-349 (1072)
135 PF05911 DUF869: Plant protein 93.7 19 0.00041 42.7 34.7 82 310-395 123-206 (769)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 5.5 0.00012 36.4 19.1 22 321-342 106-127 (132)
137 KOG0946|consensus 93.6 18 0.00039 42.1 42.9 64 237-303 653-716 (970)
138 PF06818 Fez1: Fez1; InterPro 93.4 8.2 0.00018 37.7 21.7 143 317-466 7-151 (202)
139 KOG4593|consensus 93.3 19 0.00041 41.3 51.2 78 266-343 238-315 (716)
140 KOG1003|consensus 93.0 9.1 0.0002 36.9 27.6 72 327-401 109-180 (205)
141 KOG1853|consensus 92.9 11 0.00024 37.6 19.5 41 338-378 144-184 (333)
142 KOG1003|consensus 92.8 9.6 0.00021 36.7 24.5 14 340-353 108-121 (205)
143 PF12325 TMF_TATA_bd: TATA ele 92.8 4.8 0.0001 36.1 13.9 9 306-314 99-107 (120)
144 KOG0982|consensus 92.7 17 0.00036 39.2 25.4 30 555-588 463-492 (502)
145 COG4372 Uncharacterized protei 92.7 16 0.00034 38.9 32.7 16 78-93 10-25 (499)
146 PF13851 GAS: Growth-arrest sp 92.6 11 0.00024 37.1 22.9 81 263-349 42-122 (201)
147 TIGR03185 DNA_S_dndD DNA sulfu 92.0 31 0.00067 40.6 38.4 12 660-671 580-591 (650)
148 COG4477 EzrA Negative regulato 90.9 31 0.00066 38.5 40.5 18 575-592 534-551 (570)
149 PF11971 CAMSAP_CH: CAMSAP CH 90.9 0.31 6.7E-06 40.9 3.9 66 22-95 7-73 (85)
150 PF10481 CENP-F_N: Cenp-F N-te 90.8 15 0.00033 37.2 16.0 80 305-390 41-120 (307)
151 COG5185 HEC1 Protein involved 90.8 29 0.00062 37.9 35.0 17 632-648 582-598 (622)
152 PF10146 zf-C4H2: Zinc finger- 90.7 9.6 0.00021 38.3 15.0 26 328-353 33-58 (230)
153 KOG0804|consensus 90.4 17 0.00037 39.4 17.1 10 84-93 129-138 (493)
154 PF15254 CCDC14: Coiled-coil d 90.0 44 0.00096 38.9 24.8 37 380-416 516-552 (861)
155 PF10146 zf-C4H2: Zinc finger- 90.0 18 0.00038 36.5 16.2 32 322-353 34-65 (230)
156 KOG2991|consensus 89.4 25 0.00054 35.3 23.4 41 451-494 215-255 (330)
157 PF08614 ATG16: Autophagy prot 89.4 6.5 0.00014 38.5 12.6 115 449-579 70-184 (194)
158 TIGR01005 eps_transp_fam exopo 89.3 57 0.0012 39.1 23.3 19 448-466 290-308 (754)
159 PF13514 AAA_27: AAA domain 89.2 72 0.0016 40.2 58.5 41 475-515 550-590 (1111)
160 PF04111 APG6: Autophagy prote 89.0 8.1 0.00018 40.9 13.8 33 388-420 101-133 (314)
161 KOG0978|consensus 88.9 53 0.0011 38.3 54.7 75 552-626 509-591 (698)
162 PRK10884 SH3 domain-containing 88.3 9.1 0.0002 37.8 12.6 40 377-416 130-169 (206)
163 KOG0018|consensus 88.1 70 0.0015 38.8 39.6 55 364-418 295-349 (1141)
164 PF10481 CENP-F_N: Cenp-F N-te 87.9 33 0.00072 34.8 19.6 27 327-353 95-121 (307)
165 PF06785 UPF0242: Uncharacteri 87.7 39 0.00084 35.3 18.5 44 338-384 138-181 (401)
166 COG0419 SbcC ATPase involved i 87.5 81 0.0018 38.8 62.4 6 9-14 39-44 (908)
167 KOG0963|consensus 87.3 59 0.0013 37.0 47.2 26 602-627 412-437 (629)
168 PF08317 Spc7: Spc7 kinetochor 87.1 45 0.00098 35.5 29.5 57 357-413 208-264 (325)
169 PF04111 APG6: Autophagy prote 86.9 15 0.00032 39.0 14.1 21 393-413 113-133 (314)
170 PF04728 LPP: Lipoprotein leuc 86.7 7.6 0.00016 29.6 8.3 53 262-317 3-56 (56)
171 KOG0979|consensus 86.7 82 0.0018 38.0 24.3 39 365-403 318-356 (1072)
172 PF09787 Golgin_A5: Golgin sub 86.4 66 0.0014 36.6 34.5 13 306-318 231-243 (511)
173 PF09738 DUF2051: Double stran 86.2 18 0.0004 37.9 14.0 23 493-515 223-245 (302)
174 PF10168 Nup88: Nuclear pore c 86.2 81 0.0018 37.5 22.1 14 287-300 580-593 (717)
175 PF15397 DUF4618: Domain of un 86.1 43 0.00092 34.2 29.1 34 388-421 188-221 (258)
176 COG2433 Uncharacterized conser 86.0 67 0.0015 36.6 18.7 35 386-420 474-508 (652)
177 PF05010 TACC: Transforming ac 85.7 39 0.00085 33.4 29.3 35 385-419 167-201 (207)
178 TIGR03185 DNA_S_dndD DNA sulfu 85.3 85 0.0018 36.9 39.1 9 212-220 186-194 (650)
179 PF15066 CAGE1: Cancer-associa 85.2 64 0.0014 35.4 29.3 12 121-132 159-170 (527)
180 PF10498 IFT57: Intra-flagella 85.0 61 0.0013 35.0 17.8 20 447-466 329-348 (359)
181 PF13851 GAS: Growth-arrest sp 85.0 42 0.00091 33.1 23.5 16 287-302 28-43 (201)
182 PF13870 DUF4201: Domain of un 84.9 38 0.00082 32.5 24.0 88 330-420 45-132 (177)
183 TIGR03007 pepcterm_ChnLen poly 84.5 78 0.0017 35.8 24.6 31 391-421 353-383 (498)
184 KOG1962|consensus 84.0 18 0.00038 35.8 11.9 33 383-415 176-208 (216)
185 TIGR00634 recN DNA repair prot 83.3 94 0.002 35.9 24.8 32 196-227 170-201 (563)
186 TIGR03007 pepcterm_ChnLen poly 83.1 88 0.0019 35.4 21.5 55 328-382 325-379 (498)
187 KOG0018|consensus 82.9 1.2E+02 0.0026 36.9 50.4 25 101-126 132-156 (1141)
188 KOG0962|consensus 82.8 1.4E+02 0.003 37.4 53.3 23 202-224 269-291 (1294)
189 PF10226 DUF2216: Uncharacteri 82.7 47 0.001 32.0 16.0 78 263-340 49-128 (195)
190 COG2433 Uncharacterized conser 82.4 25 0.00055 39.8 13.6 34 264-300 431-464 (652)
191 KOG2046|consensus 80.7 11 0.00023 36.5 8.9 41 9-49 24-67 (193)
192 KOG0804|consensus 80.1 98 0.0021 33.9 17.0 53 326-378 395-448 (493)
193 PF06785 UPF0242: Uncharacteri 79.6 85 0.0018 32.9 19.1 18 326-343 98-115 (401)
194 KOG1899|consensus 78.3 1.3E+02 0.0028 34.3 20.1 31 188-225 105-135 (861)
195 TIGR00634 recN DNA repair prot 78.2 1.4E+02 0.003 34.5 24.1 17 449-465 325-341 (563)
196 KOG0962|consensus 77.8 2E+02 0.0043 36.1 49.0 29 487-515 1006-1034(1294)
197 KOG1924|consensus 77.2 1.6E+02 0.0034 34.7 21.9 42 71-112 204-245 (1102)
198 COG4026 Uncharacterized protei 76.9 30 0.00065 34.0 10.6 31 99-132 5-36 (290)
199 PF13870 DUF4201: Domain of un 76.9 72 0.0016 30.6 21.7 22 602-623 153-174 (177)
200 TIGR01005 eps_transp_fam exopo 75.7 1.9E+02 0.004 34.8 25.7 53 357-413 351-403 (754)
201 KOG1962|consensus 75.7 58 0.0013 32.3 12.5 7 343-349 160-166 (216)
202 TIGR01843 type_I_hlyD type I s 75.7 1.3E+02 0.0028 32.9 22.9 20 202-221 82-101 (423)
203 PF04156 IncA: IncA protein; 75.7 80 0.0017 30.5 20.2 7 78-84 11-17 (191)
204 PRK10929 putative mechanosensi 75.0 2.3E+02 0.005 35.5 41.4 24 492-515 407-430 (1109)
205 PRK10884 SH3 domain-containing 74.3 57 0.0012 32.3 12.3 18 449-466 89-106 (206)
206 TIGR02449 conserved hypothetic 74.3 34 0.00073 27.1 8.4 52 368-419 3-54 (65)
207 PF11559 ADIP: Afadin- and alp 74.3 75 0.0016 29.6 19.0 38 183-220 41-78 (151)
208 KOG2129|consensus 74.2 1.3E+02 0.0029 32.4 25.3 18 449-466 249-266 (552)
209 PF10498 IFT57: Intra-flagella 73.6 1.4E+02 0.003 32.3 16.2 47 307-353 267-313 (359)
210 COG4026 Uncharacterized protei 73.5 28 0.00061 34.2 9.4 41 373-413 164-204 (290)
211 KOG0249|consensus 73.5 1.9E+02 0.004 33.7 18.7 41 380-420 217-257 (916)
212 TIGR02338 gimC_beta prefoldin, 72.9 65 0.0014 28.3 13.0 36 535-570 70-105 (110)
213 PF05384 DegS: Sensor protein 71.3 94 0.002 29.4 18.8 40 475-514 34-73 (159)
214 PF09304 Cortex-I_coil: Cortex 71.0 71 0.0015 27.8 15.0 59 449-515 12-70 (107)
215 PF15290 Syntaphilin: Golgi-lo 70.4 96 0.0021 31.8 12.7 14 237-250 92-105 (305)
216 TIGR02977 phageshock_pspA phag 70.3 1.2E+02 0.0026 30.2 19.3 97 478-574 34-134 (219)
217 PRK10869 recombination and rep 70.2 2.1E+02 0.0045 33.0 27.8 11 142-152 137-147 (553)
218 KOG0046|consensus 70.1 4.5 9.7E-05 44.6 3.7 43 11-53 389-432 (627)
219 smart00787 Spc7 Spc7 kinetocho 70.1 1.5E+02 0.0033 31.3 28.9 55 360-414 206-260 (312)
220 PF02403 Seryl_tRNA_N: Seryl-t 69.9 33 0.00072 29.9 8.7 70 279-351 29-98 (108)
221 PF06156 DUF972: Protein of un 69.9 27 0.00058 30.7 7.9 50 179-228 7-56 (107)
222 PF04012 PspA_IM30: PspA/IM30 69.0 1.3E+02 0.0027 30.0 20.9 41 475-515 30-70 (221)
223 KOG4403|consensus 68.2 1.9E+02 0.004 31.6 15.9 30 271-300 244-273 (575)
224 PRK10929 putative mechanosensi 67.9 3.2E+02 0.007 34.2 42.1 36 186-221 57-92 (1109)
225 PF09738 DUF2051: Double stran 67.4 1.4E+02 0.0031 31.4 14.0 14 194-207 18-31 (302)
226 COG3883 Uncharacterized protei 66.7 1.6E+02 0.0035 30.3 24.2 26 198-223 35-60 (265)
227 KOG4360|consensus 66.5 2.2E+02 0.0048 31.8 22.5 13 454-466 330-342 (596)
228 PF09787 Golgin_A5: Golgin sub 66.5 2.4E+02 0.0051 32.2 36.2 18 449-466 277-294 (511)
229 PRK13169 DNA replication intia 66.1 37 0.00081 29.9 7.9 49 179-227 7-55 (110)
230 PF09304 Cortex-I_coil: Cortex 66.0 91 0.002 27.2 14.7 87 475-576 16-102 (107)
231 PF10205 KLRAQ: Predicted coil 65.7 90 0.002 27.1 10.9 17 284-300 3-19 (102)
232 PF06008 Laminin_I: Laminin Do 65.6 1.7E+02 0.0036 30.1 28.6 62 356-417 183-244 (264)
233 TIGR03017 EpsF chain length de 65.1 2.3E+02 0.0049 31.4 25.8 28 385-412 341-368 (444)
234 PRK09343 prefoldin subunit bet 64.4 1.1E+02 0.0023 27.5 13.7 48 520-570 62-109 (121)
235 PF08172 CASP_C: CASP C termin 64.2 80 0.0017 32.2 11.2 49 372-420 86-134 (248)
236 PRK10698 phage shock protein P 64.0 1.6E+02 0.0035 29.4 19.6 37 479-515 35-71 (222)
237 PF05384 DegS: Sensor protein 63.9 1.3E+02 0.0029 28.4 21.5 41 258-301 23-63 (159)
238 KOG1937|consensus 62.6 2.4E+02 0.0053 31.0 31.9 24 28-51 22-48 (521)
239 PF15066 CAGE1: Cancer-associa 62.5 2.5E+02 0.0054 31.0 28.3 36 16-54 97-144 (527)
240 PF04582 Reo_sigmaC: Reovirus 62.1 16 0.00034 38.5 5.7 68 448-516 30-97 (326)
241 PF07106 TBPIP: Tat binding pr 62.0 1.3E+02 0.0029 28.5 11.9 24 197-220 82-105 (169)
242 PF05278 PEARLI-4: Arabidopsis 61.7 2E+02 0.0043 29.6 16.5 13 148-160 96-108 (269)
243 PF07798 DUF1640: Protein of u 61.6 1.6E+02 0.0034 28.3 19.4 27 134-160 6-34 (177)
244 PF07106 TBPIP: Tat binding pr 61.1 57 0.0012 31.0 9.1 53 449-509 82-136 (169)
245 PRK10246 exonuclease subunit S 60.5 4.3E+02 0.0093 33.1 47.9 365 174-546 434-881 (1047)
246 PF04012 PspA_IM30: PspA/IM30 60.0 1.9E+02 0.004 28.7 22.5 47 239-285 28-74 (221)
247 COG4372 Uncharacterized protei 59.3 2.6E+02 0.0056 30.1 34.1 38 382-419 140-177 (499)
248 PRK15396 murein lipoprotein; P 58.7 56 0.0012 26.9 7.2 47 267-316 30-77 (78)
249 PF07851 TMPIT: TMPIT-like pro 58.6 1.4E+02 0.0031 31.7 12.1 10 313-322 21-30 (330)
250 PF13815 Dzip-like_N: Iguana/D 58.5 47 0.001 29.6 7.5 37 100-136 17-53 (118)
251 PRK11281 hypothetical protein; 58.2 4.7E+02 0.01 32.9 42.5 37 186-222 72-108 (1113)
252 PF07111 HCR: Alpha helical co 57.7 3.7E+02 0.008 31.5 58.9 19 448-466 473-491 (739)
253 PF12329 TMF_DNA_bd: TATA elem 57.6 1E+02 0.0022 25.0 9.8 13 328-340 6-18 (74)
254 KOG1937|consensus 57.3 3E+02 0.0065 30.3 39.8 13 11-23 33-45 (521)
255 PF15290 Syntaphilin: Golgi-lo 56.6 2.1E+02 0.0046 29.4 12.2 17 554-570 132-148 (305)
256 PF04949 Transcrip_act: Transc 56.5 1.7E+02 0.0036 27.1 16.8 59 356-414 82-140 (159)
257 KOG4005|consensus 56.1 1.2E+02 0.0027 30.2 10.2 38 187-224 83-120 (292)
258 PF10234 Cluap1: Clusterin-ass 55.9 2.5E+02 0.0054 29.0 14.6 12 97-108 13-24 (267)
259 PF15397 DUF4618: Domain of un 55.7 2.5E+02 0.0053 28.8 31.1 83 259-341 10-102 (258)
260 PF14197 Cep57_CLD_2: Centroso 55.6 1.1E+02 0.0023 24.6 9.9 19 328-346 6-24 (69)
261 PF12795 MscS_porin: Mechanose 55.2 2.4E+02 0.0052 28.5 26.7 55 367-421 80-134 (240)
262 PLN02939 transferase, transfer 54.9 4.9E+02 0.011 32.0 31.0 23 206-228 161-183 (977)
263 PRK10361 DNA recombination pro 54.9 3.5E+02 0.0076 30.4 24.8 24 324-347 169-192 (475)
264 PF11559 ADIP: Afadin- and alp 54.9 1.8E+02 0.0039 27.0 16.2 18 555-572 128-145 (151)
265 PF06008 Laminin_I: Laminin Do 54.6 2.6E+02 0.0056 28.7 30.7 37 369-405 63-99 (264)
266 COG4717 Uncharacterized conser 54.0 4.7E+02 0.01 31.5 30.6 237 175-420 608-852 (984)
267 PF00769 ERM: Ezrin/radixin/mo 53.8 2.6E+02 0.0056 28.5 18.2 18 383-400 100-117 (246)
268 KOG0249|consensus 53.8 4.3E+02 0.0092 31.0 23.8 12 272-283 142-153 (916)
269 PLN03229 acetyl-coenzyme A car 53.7 4.4E+02 0.0096 31.2 27.3 67 236-304 431-497 (762)
270 PF07058 Myosin_HC-like: Myosi 53.7 2.8E+02 0.0061 28.9 17.3 19 191-209 4-22 (351)
271 PF00769 ERM: Ezrin/radixin/mo 53.4 2.6E+02 0.0057 28.4 17.3 12 408-419 55-66 (246)
272 COG1382 GimC Prefoldin, chaper 53.3 1.7E+02 0.0037 26.2 13.7 20 496-515 27-46 (119)
273 PF07851 TMPIT: TMPIT-like pro 53.2 1.4E+02 0.0031 31.7 11.0 25 600-624 67-91 (330)
274 PF02183 HALZ: Homeobox associ 53.2 61 0.0013 23.6 5.9 36 384-419 3-38 (45)
275 KOG4005|consensus 53.0 2.3E+02 0.0049 28.3 11.4 54 368-421 93-146 (292)
276 PRK02119 hypothetical protein; 52.6 1.3E+02 0.0027 24.5 8.3 25 325-349 7-31 (73)
277 KOG2991|consensus 52.5 2.7E+02 0.0058 28.3 29.4 94 305-401 179-293 (330)
278 PRK11281 hypothetical protein; 51.7 5.9E+02 0.013 32.0 42.3 41 475-515 292-332 (1113)
279 PF05278 PEARLI-4: Arabidopsis 51.5 2.9E+02 0.0063 28.4 16.4 26 394-419 236-261 (269)
280 TIGR02449 conserved hypothetic 51.0 1.2E+02 0.0027 24.0 8.8 41 257-300 9-49 (65)
281 PF14992 TMCO5: TMCO5 family 51.0 3E+02 0.0066 28.5 14.8 8 268-275 31-38 (280)
282 PRK10869 recombination and rep 50.3 4.5E+02 0.0098 30.3 26.7 17 449-465 320-336 (553)
283 PF08172 CASP_C: CASP C termin 48.5 51 0.0011 33.6 6.7 41 182-222 81-121 (248)
284 PF04102 SlyX: SlyX; InterPro 48.2 1.1E+02 0.0024 24.4 7.4 17 328-344 5-21 (69)
285 PF11932 DUF3450: Protein of u 48.1 3.1E+02 0.0068 27.8 15.3 6 453-458 128-133 (251)
286 PF12240 Angiomotin_C: Angiomo 48.1 2.8E+02 0.006 27.2 12.1 42 601-643 57-98 (205)
287 KOG4603|consensus 48.1 2.5E+02 0.0054 26.7 12.6 49 475-523 107-157 (201)
288 PF15294 Leu_zip: Leucine zipp 48.0 3.4E+02 0.0073 28.2 28.3 44 449-500 128-171 (278)
289 KOG4603|consensus 47.8 2E+02 0.0044 27.3 9.7 40 381-420 102-143 (201)
290 COG1842 PspA Phage shock prote 47.3 3.1E+02 0.0067 27.5 21.2 41 475-515 31-71 (225)
291 KOG3091|consensus 47.2 4.5E+02 0.0098 29.4 15.5 67 234-300 376-442 (508)
292 COG1842 PspA Phage shock prote 46.8 3.2E+02 0.0069 27.5 22.1 43 241-283 31-73 (225)
293 KOG3000|consensus 46.3 20 0.00042 37.4 3.4 39 12-51 17-55 (295)
294 PF14073 Cep57_CLD: Centrosome 46.2 2.8E+02 0.0061 26.7 20.3 31 453-484 120-150 (178)
295 PF06156 DUF972: Protein of un 46.1 1.4E+02 0.0031 26.2 8.3 36 385-420 21-56 (107)
296 KOG2077|consensus 46.0 5E+02 0.011 29.5 14.9 46 175-220 303-348 (832)
297 KOG4360|consensus 45.9 4.8E+02 0.01 29.3 28.8 59 449-515 162-224 (596)
298 PF12777 MT: Microtubule-bindi 45.6 1.8E+02 0.0038 31.3 10.8 86 321-409 229-314 (344)
299 TIGR03752 conj_TIGR03752 integ 45.4 1.8E+02 0.0039 32.3 10.7 28 198-225 70-97 (472)
300 COG3096 MukB Uncharacterized p 45.1 5.8E+02 0.013 30.1 36.4 118 449-574 987-1108(1480)
301 PF06428 Sec2p: GDP/GTP exchan 44.6 43 0.00094 29.0 4.7 67 553-624 8-74 (100)
302 PRK04406 hypothetical protein; 44.5 1.7E+02 0.0038 23.8 8.4 23 326-348 10-32 (75)
303 PF10168 Nup88: Nuclear pore c 44.5 6.2E+02 0.013 30.2 22.2 25 601-625 685-709 (717)
304 TIGR03017 EpsF chain length de 44.0 4.8E+02 0.01 28.8 23.0 23 633-655 404-426 (444)
305 KOG4809|consensus 43.9 5.3E+02 0.011 29.2 36.6 24 241-264 236-259 (654)
306 PF10205 KLRAQ: Predicted coil 43.7 2.2E+02 0.0047 24.7 10.1 18 382-399 50-67 (102)
307 PF04912 Dynamitin: Dynamitin 43.5 4.7E+02 0.01 28.5 24.2 13 243-255 211-223 (388)
308 PRK09841 cryptic autophosphory 43.1 6.5E+02 0.014 30.1 17.5 28 196-223 269-296 (726)
309 PF06818 Fez1: Fez1; InterPro 43.0 3.4E+02 0.0073 26.7 22.5 12 357-368 137-148 (202)
310 PF10267 Tmemb_cc2: Predicted 42.9 4.9E+02 0.011 28.5 16.5 16 74-89 62-77 (395)
311 PF15035 Rootletin: Ciliary ro 42.8 3.2E+02 0.007 26.4 14.2 19 304-322 17-35 (182)
312 PRK09841 cryptic autophosphory 42.7 6.6E+02 0.014 30.0 16.1 26 238-263 271-296 (726)
313 KOG1103|consensus 42.0 4.5E+02 0.0097 27.8 18.1 36 386-421 252-287 (561)
314 TIGR02231 conserved hypothetic 41.8 3.1E+02 0.0067 31.3 12.6 15 286-300 71-85 (525)
315 PF02183 HALZ: Homeobox associ 41.8 1.4E+02 0.003 21.8 6.2 34 190-223 8-41 (45)
316 TIGR01000 bacteriocin_acc bact 41.7 5.4E+02 0.012 28.7 22.4 30 191-220 94-123 (457)
317 PRK00736 hypothetical protein; 41.3 1.8E+02 0.004 23.2 7.7 20 328-347 6-25 (68)
318 PRK05431 seryl-tRNA synthetase 41.3 1.7E+02 0.0037 32.4 10.1 28 278-305 27-54 (425)
319 PRK13169 DNA replication intia 41.2 1.8E+02 0.004 25.6 8.1 33 387-419 23-55 (110)
320 KOG1850|consensus 40.9 4.5E+02 0.0099 27.6 32.6 235 181-419 67-318 (391)
321 PRK04325 hypothetical protein; 40.7 2E+02 0.0043 23.4 8.2 22 327-348 9-30 (74)
322 PF06632 XRCC4: DNA double-str 40.4 1.7E+02 0.0036 31.5 9.4 24 475-498 158-181 (342)
323 PF04102 SlyX: SlyX; InterPro 40.1 1.7E+02 0.0037 23.3 7.3 16 241-256 4-19 (69)
324 PLN02678 seryl-tRNA synthetase 39.7 1.9E+02 0.0042 32.3 10.1 71 278-351 32-102 (448)
325 TIGR02231 conserved hypothetic 39.6 4.5E+02 0.0097 30.0 13.5 30 191-220 75-104 (525)
326 PF08826 DMPK_coil: DMPK coile 39.4 1.9E+02 0.004 22.7 9.6 26 369-394 29-54 (61)
327 PF04871 Uso1_p115_C: Uso1 / p 39.3 3.1E+02 0.0066 25.2 15.1 29 391-419 82-110 (136)
328 PF05769 DUF837: Protein of un 38.9 3.7E+02 0.008 26.0 21.2 154 274-466 5-173 (181)
329 COG3206 GumC Uncharacterized p 38.8 5.5E+02 0.012 28.7 13.9 36 553-588 366-401 (458)
330 PRK00736 hypothetical protein; 38.8 2E+02 0.0044 22.9 7.6 34 241-274 5-38 (68)
331 TIGR00414 serS seryl-tRNA synt 38.8 2E+02 0.0043 31.9 10.0 27 279-305 30-56 (418)
332 PRK02793 phi X174 lysis protei 38.8 2.1E+02 0.0045 23.1 8.2 22 327-348 8-29 (72)
333 COG4467 Regulator of replicati 38.7 2E+02 0.0043 25.1 7.6 35 192-226 20-54 (114)
334 PRK00295 hypothetical protein; 38.7 2E+02 0.0044 22.9 8.1 21 328-348 6-26 (68)
335 PF15456 Uds1: Up-regulated Du 38.1 3.1E+02 0.0066 24.8 11.8 29 322-351 24-52 (124)
336 TIGR01843 type_I_hlyD type I s 38.0 5.6E+02 0.012 27.8 26.4 18 396-413 249-266 (423)
337 PF15372 DUF4600: Domain of un 37.7 3.2E+02 0.0069 24.9 11.7 56 446-509 51-106 (129)
338 PF15188 CCDC-167: Coiled-coil 37.6 2.5E+02 0.0053 23.6 7.9 23 328-350 6-28 (85)
339 PRK09343 prefoldin subunit bet 36.9 3.1E+02 0.0067 24.5 13.2 29 391-419 83-111 (121)
340 KOG4196|consensus 36.6 3.3E+02 0.0071 24.7 10.6 40 381-420 76-115 (135)
341 PRK00295 hypothetical protein; 35.8 2.3E+02 0.0049 22.6 8.0 36 240-275 4-39 (68)
342 TIGR03752 conj_TIGR03752 integ 35.8 4E+02 0.0088 29.7 11.5 36 475-510 59-94 (472)
343 KOG3478|consensus 35.6 3.1E+02 0.0067 24.1 13.3 40 521-570 61-100 (120)
344 PF08232 Striatin: Striatin fa 35.4 3E+02 0.0065 25.2 9.0 53 369-421 8-60 (134)
345 COG3883 Uncharacterized protei 35.2 5.2E+02 0.011 26.6 29.6 25 188-212 46-70 (265)
346 PF15035 Rootletin: Ciliary ro 34.9 4.3E+02 0.0093 25.6 20.1 62 449-515 60-121 (182)
347 PF04065 Not3: Not1 N-terminal 34.6 5E+02 0.011 26.2 13.1 24 600-623 128-151 (233)
348 PF12004 DUF3498: Domain of un 34.5 13 0.00028 41.5 0.0 45 309-353 407-452 (495)
349 PF07798 DUF1640: Protein of u 34.4 4.2E+02 0.0091 25.3 14.9 19 495-513 50-68 (177)
350 PF04880 NUDE_C: NUDE protein, 34.2 60 0.0013 30.9 4.3 41 330-370 3-43 (166)
351 KOG2010|consensus 34.0 5.8E+02 0.013 26.9 11.7 43 357-399 146-188 (405)
352 PF15358 TSKS: Testis-specific 33.8 5.6E+02 0.012 27.8 11.6 65 287-351 140-205 (558)
353 PF10805 DUF2730: Protein of u 33.8 2.5E+02 0.0055 24.4 8.0 57 364-420 34-92 (106)
354 PRK02793 phi X174 lysis protei 33.7 2.6E+02 0.0055 22.6 7.8 28 239-266 6-33 (72)
355 PRK00846 hypothetical protein; 33.4 2.7E+02 0.0059 22.9 8.2 22 327-348 13-34 (77)
356 PF15294 Leu_zip: Leucine zipp 33.0 5.8E+02 0.012 26.5 29.1 45 378-422 131-175 (278)
357 PRK04325 hypothetical protein; 32.6 2.7E+02 0.0059 22.6 8.1 34 240-273 8-41 (74)
358 PF05529 Bap31: B-cell recepto 32.3 3.5E+02 0.0076 26.2 9.7 18 386-403 161-178 (192)
359 PF10224 DUF2205: Predicted co 32.3 2.9E+02 0.0063 22.9 7.8 38 383-420 27-64 (80)
360 PRK10803 tol-pal system protei 32.0 3E+02 0.0066 28.3 9.5 41 377-417 59-99 (263)
361 cd00632 Prefoldin_beta Prefold 31.2 3.5E+02 0.0075 23.4 13.0 12 558-569 82-93 (105)
362 KOG4438|consensus 31.0 7.5E+02 0.016 27.2 36.8 63 76-145 80-143 (446)
363 PRK02119 hypothetical protein; 31.0 2.9E+02 0.0062 22.4 8.2 26 239-264 7-32 (73)
364 TIGR03545 conserved hypothetic 31.0 8.8E+02 0.019 28.0 16.2 15 635-649 297-311 (555)
365 PF02050 FliJ: Flagellar FliJ 30.9 3.4E+02 0.0074 23.2 13.2 101 528-634 1-115 (123)
366 PF05266 DUF724: Protein of un 30.8 5.1E+02 0.011 25.2 14.4 15 236-250 30-44 (190)
367 PF06810 Phage_GP20: Phage min 30.7 4.1E+02 0.0089 24.9 9.3 32 485-516 16-47 (155)
368 COG3074 Uncharacterized protei 30.6 2.8E+02 0.0061 22.1 10.0 12 408-419 47-58 (79)
369 TIGR02894 DNA_bind_RsfA transc 30.4 4.7E+02 0.01 24.7 9.5 21 381-401 120-140 (161)
370 KOG4571|consensus 30.4 3.6E+02 0.0078 28.0 9.3 43 311-353 238-281 (294)
371 PF14988 DUF4515: Domain of un 30.3 5.5E+02 0.012 25.4 26.8 39 383-421 160-198 (206)
372 PF05700 BCAS2: Breast carcino 30.1 5.6E+02 0.012 25.5 16.2 34 366-399 176-209 (221)
373 PF10046 BLOC1_2: Biogenesis o 30.1 3.6E+02 0.0077 23.2 13.1 83 480-577 12-97 (99)
374 KOG3478|consensus 29.8 3.9E+02 0.0084 23.5 12.8 26 379-404 76-101 (120)
375 PF10458 Val_tRNA-synt_C: Valy 29.7 2.8E+02 0.006 21.8 7.3 28 200-227 3-30 (66)
376 PF04728 LPP: Lipoprotein leuc 29.3 2.6E+02 0.0057 21.4 7.7 30 377-406 15-44 (56)
377 PLN02320 seryl-tRNA synthetase 28.7 3.3E+02 0.0072 30.8 9.7 16 286-301 100-115 (502)
378 PF06216 RTBV_P46: Rice tungro 28.4 3.4E+02 0.0074 27.3 8.5 55 244-301 60-114 (389)
379 PF15254 CCDC14: Coiled-coil d 28.3 1.1E+03 0.023 28.2 24.0 22 258-279 451-472 (861)
380 PF14073 Cep57_CLD: Centrosome 28.1 5.5E+02 0.012 24.7 22.4 32 190-221 7-38 (178)
381 PF04582 Reo_sigmaC: Reovirus 28.1 70 0.0015 33.8 4.0 21 602-622 134-154 (326)
382 PF04912 Dynamitin: Dynamitin 27.9 8.2E+02 0.018 26.6 25.3 18 449-466 242-259 (388)
383 KOG0288|consensus 27.8 8.4E+02 0.018 26.7 15.9 28 252-279 38-65 (459)
384 COG4650 RtcR Sigma54-dependent 27.7 48 0.001 34.3 2.7 33 637-669 192-226 (531)
385 TIGR01000 bacteriocin_acc bact 27.7 8.8E+02 0.019 27.0 24.7 25 188-212 98-122 (457)
386 PF00772 DnaB: DnaB-like helic 27.7 62 0.0014 27.5 3.1 74 39-140 22-102 (103)
387 PF13863 DUF4200: Domain of un 27.4 4.4E+02 0.0095 23.3 14.0 88 323-413 21-108 (126)
388 KOG3647|consensus 27.4 6.9E+02 0.015 25.6 15.0 71 502-583 118-188 (338)
389 PRK04406 hypothetical protein; 27.4 3.4E+02 0.0074 22.1 8.5 28 390-417 29-56 (75)
390 TIGR02473 flagell_FliJ flagell 27.3 4.6E+02 0.01 23.5 13.3 50 576-627 66-115 (141)
391 KOG3809|consensus 27.2 8.7E+02 0.019 26.7 12.4 34 104-137 93-126 (583)
392 PF08581 Tup_N: Tup N-terminal 26.8 3.7E+02 0.0079 22.2 11.6 9 326-334 45-53 (79)
393 PF06428 Sec2p: GDP/GTP exchan 26.8 3.5E+02 0.0075 23.5 7.4 40 475-514 22-62 (100)
394 PRK11519 tyrosine kinase; Prov 26.8 1.1E+03 0.025 28.0 16.9 26 238-263 271-296 (719)
395 PRK00888 ftsB cell division pr 26.2 2.5E+02 0.0054 24.5 6.6 15 236-250 29-43 (105)
396 PF06810 Phage_GP20: Phage min 25.9 5.6E+02 0.012 24.0 10.3 29 309-337 40-68 (155)
397 PF10224 DUF2205: Predicted co 25.6 3.9E+02 0.0084 22.2 7.7 24 369-392 27-50 (80)
398 PF06120 Phage_HK97_TLTM: Tail 25.2 8.2E+02 0.018 25.7 17.3 130 448-590 57-189 (301)
399 TIGR01446 DnaD_dom DnaD and ph 25.2 75 0.0016 25.3 3.0 55 84-140 2-57 (73)
400 KOG2264|consensus 24.7 4.5E+02 0.0097 29.9 9.4 11 409-419 137-147 (907)
401 PF08702 Fib_alpha: Fibrinogen 24.6 5.7E+02 0.012 23.7 13.6 26 600-625 103-128 (146)
402 PF06657 Cep57_MT_bd: Centroso 24.4 4E+02 0.0087 21.9 7.6 64 556-620 13-76 (79)
403 PRK14011 prefoldin subunit alp 24.3 5.8E+02 0.013 23.7 12.7 33 537-569 93-125 (144)
404 PRK12704 phosphodiesterase; Pr 24.2 1.1E+03 0.024 26.9 20.8 33 612-644 170-204 (520)
405 PF14992 TMCO5: TMCO5 family 24.0 8.3E+02 0.018 25.4 16.0 17 386-402 151-167 (280)
406 PF08166 NUC202: NUC202 domain 23.9 1E+02 0.0022 24.0 3.2 44 9-52 7-50 (61)
407 COG0497 RecN ATPase involved i 23.6 1.2E+03 0.025 26.9 21.9 188 176-369 167-374 (557)
408 PF11365 DUF3166: Protein of u 23.5 4.8E+02 0.01 22.5 8.2 67 320-389 1-93 (96)
409 KOG0046|consensus 23.5 1.2E+02 0.0027 33.8 5.0 119 10-137 119-249 (627)
410 PF15030 DUF4527: Protein of u 23.2 7.9E+02 0.017 24.8 11.4 68 449-517 12-79 (277)
411 PF07989 Microtub_assoc: Micro 23.1 4.2E+02 0.009 21.6 8.6 29 449-485 3-31 (75)
412 PF04799 Fzo_mitofusin: fzo-li 22.9 6.8E+02 0.015 24.0 9.8 25 267-291 125-149 (171)
413 PF03962 Mnd1: Mnd1 family; I 22.8 7.1E+02 0.015 24.2 14.9 26 195-220 70-95 (188)
414 PF07989 Microtub_assoc: Micro 22.7 4.3E+02 0.0092 21.6 9.7 29 489-517 7-35 (75)
415 PF02994 Transposase_22: L1 tr 22.5 2.9E+02 0.0063 30.0 7.7 18 449-466 259-276 (370)
416 PF11461 RILP: Rab interacting 22.5 1.6E+02 0.0036 22.9 4.1 27 180-206 3-29 (60)
417 smart00674 CENPB Putative DNA- 22.2 1.1E+02 0.0023 23.8 3.2 20 9-28 5-25 (66)
418 PF07200 Mod_r: Modifier of ru 22.1 6.2E+02 0.013 23.2 14.3 24 326-349 33-56 (150)
419 KOG4196|consensus 22.1 3.1E+02 0.0067 24.8 6.3 10 258-267 105-114 (135)
420 PF04799 Fzo_mitofusin: fzo-li 21.9 7.1E+02 0.015 23.8 9.5 27 291-317 125-151 (171)
421 PF04880 NUDE_C: NUDE protein, 21.9 1.5E+02 0.0032 28.2 4.6 17 284-300 29-45 (166)
422 COG3352 FlaC Putative archaeal 21.5 6.8E+02 0.015 23.4 9.5 79 340-421 50-129 (157)
423 PF08946 Osmo_CC: Osmosensory 21.4 2.1E+02 0.0045 20.9 4.1 29 188-216 13-41 (46)
424 PRK00846 hypothetical protein; 21.4 4.7E+02 0.01 21.5 8.0 14 240-253 12-25 (77)
425 KOG4572|consensus 21.2 1.5E+03 0.032 27.3 35.2 39 379-417 995-1033(1424)
426 PF12761 End3: Actin cytoskele 20.7 5.5E+02 0.012 25.1 8.2 18 236-253 98-115 (195)
427 KOG0239|consensus 20.4 1.5E+03 0.032 26.9 17.3 132 258-395 182-316 (670)
428 PRK14127 cell division protein 20.3 3.9E+02 0.0085 23.5 6.6 57 448-512 32-101 (109)
429 PRK10803 tol-pal system protei 20.3 6E+02 0.013 26.1 9.2 41 540-580 55-95 (263)
No 1
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=100.00 E-value=9.5e-113 Score=989.78 Aligned_cols=671 Identities=44% Similarity=0.691 Sum_probs=126.9
Q ss_pred CCcChHHhHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659 4 TQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI 83 (684)
Q Consensus 4 ~~~~~~~~~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i 83 (684)
|+.+++++|+|||+||+||+++.||.++.||+|||+||+||++|||.||+++||++|+.++++ ||++|++||++||++|
T Consensus 1 ~~~~~~~l~~~Lv~Wv~tf~~~~~~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~-nw~lr~~NLk~l~~~i 79 (713)
T PF05622_consen 1 MSDDKMELCDSLVTWVQTFNLSAPCSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGD-NWRLRVSNLKKLLRNI 79 (713)
T ss_dssp ------HHHHHHHHHHTT---SS---SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG--SHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHCCCCCCcCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCc-cHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHHHhcCCCchhhhHHhHcCCHHHHHHHHHHHHHHhcccC-
Q psy11659 84 VDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHG- 162 (684)
Q Consensus 84 ~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~av~~~~~~~~I~~I~~L~~~~Q~~lm~~Iq~~~~~~~- 162 (684)
.+||+++||++++.+++||+..||++||+.+|++||.|||||||+||+|+.||++||+|+.+||++||.+||+||+..+
T Consensus 80 ~~yy~e~L~~~i~~~~~Pd~~~Iae~~d~~El~kLL~LlLgcAV~c~~ke~yI~~I~~Ld~~~Q~~im~~Iqev~~~~~~ 159 (713)
T PF05622_consen 80 KSYYQEELGQQISEMPLPDLQAIAENSDPEELKKLLQLLLGCAVQCENKEEYIQRIMELDESTQHAIMEAIQEVTSNQQN 159 (713)
T ss_dssp HHHHHTTT-----TTT---HHHHHTT--HHHHHHHHHHHHHHTTSSSTHHHHHHHHHHS-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHcCCCcCcCCCCCHHHHHhCCCHHHHHHHHHHHHHHhhcCccHHHHHHHHHCCCHHHHHHHHHHHHHHhccccc
Confidence 9999999999888899999999999999999999999999999999999999999999999999999999999999832
Q ss_pred --CCCCCCCCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCcccc
Q psy11659 163 --STHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENF------VEPTNK 234 (684)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~------~~~~~~ 234 (684)
.+.+++++++..++.++.++..+.+++|.+.++|++++.++..|.++++.|..++..+..+++..+ +++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~ 239 (713)
T PF05622_consen 160 VSLSQDSPEDLDSQSRRMYEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSV 239 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHH
Confidence 345567778888888888999999999999999999999999999999999999999998887655 133457
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 235 GNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIET 314 (684)
Q Consensus 235 ~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~ 314 (684)
++..++.+++.+++++++.+..+++++.+++.+++++.++++++++|...+.+++.|+|++|.+|++++++.++++.+++
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~ 319 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEK 319 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy11659 315 YKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEK 394 (684)
Q Consensus 315 ~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~ 394 (684)
||+|++++.+++++++.|++.|..|++++..||++++++.+++.+++.|++++.+++..+.+...+++.+++++..++++
T Consensus 320 YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek 399 (713)
T PF05622_consen 320 YKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEK 399 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcc-----cccccccccCChHHHHHHHHHHHHHHHHhhhhc
Q psy11659 395 VTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLG-----ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQ 469 (684)
Q Consensus 395 l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~-----~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~ 469 (684)
+..++.+++++..+++.|++.+++|.|.+.+... +..++ .....+.++.+ .++++++.+|++||+.|+..+
T Consensus 400 ~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~---l~~~~~~~~~~~~~l~~El~~-~~l~erl~rLe~ENk~Lk~~~ 475 (713)
T PF05622_consen 400 LEALEEEKERLQEERDSLRETNEELECSQAQQEQ---LSQSGEESSSSGDNLSAELNP-AELRERLLRLEHENKRLKEKQ 475 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---cccccccccccccchhhhccc-hHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987654332 21111 11122345567 789999999999999999888
Q ss_pred ccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhhHhHHHHhH-------HHHHHH
Q psy11659 470 KDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV---------TEDAAGMKVKI-------FELQNE 533 (684)
Q Consensus 470 ~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~---------~~~~~~lk~kl-------~e~~~e 533 (684)
++..++++..|+..|+++++.+..|+.+++....++..++.+++++. ..++..+++++ .++..+
T Consensus 476 e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk~~le~~~~~l~e~~~e 555 (713)
T PF05622_consen 476 EESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSEDSSELKQKLEEHLEKLRELKDE 555 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 88777888999999999999999999999999999999999999872 22345666655 455566
Q ss_pred HHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHh
Q psy11659 534 IKNLKEQINHQQEEHLEQ-GKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDD 612 (684)
Q Consensus 534 le~~r~~l~~le~q~~~~-~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e 612 (684)
+.+.+..+++++...... ..++.+|+..|..++.+|+.++++|++|+++|+++|++|+|++++ +.+++..|++++.+
T Consensus 556 ~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~--~~~e~~~L~~ql~e 633 (713)
T PF05622_consen 556 LQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNP--SSPEIQALKKQLQE 633 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccC--ChHHHHHHHHHHHH
Confidence 667777788877776544 788999999999999999999999999999999999999999987 88899999999999
Q ss_pred hhhhHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCCcchhhhhhhhh--ccCCCCCCC
Q psy11659 613 KDKMLDDLEKTLEKK----EQQEKLIATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQAS--RRNVRPVAP 683 (684)
Q Consensus 613 ~e~~i~~LE~~~~~~----~~E~~l~~~a~y~~~~~~~~~~~~~r~~~~~~~~~~~sfl~~qr~~~--~~~~~~~~~ 683 (684)
++++|+.||.+++++ ++|++||+||||||||+||+.+|++|++++ +|+||||||||||+| ||++++.+|
T Consensus 634 ~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~~g~~~~~~~~~~r~~~~--~~~~~sfL~rqR~~~~~r~~~~~~~~ 708 (713)
T PF05622_consen 634 KDRRIESLEKELEKSKQMREQEEKLIVSAWYNLGMRLHREAMESRLAAL--SGPGQSFLARQRQATNARRGPSGRVQ 708 (713)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCccHHHHhhccccCCCCCCCCCC
Confidence 999999999999887 999999999999999999999999999876 479999999999999 888777544
No 2
>KOG4643|consensus
Probab=99.95 E-value=7.6e-22 Score=218.94 Aligned_cols=296 Identities=21% Similarity=0.309 Sum_probs=205.5
Q ss_pred hcHHHHHHHHHHHHHHhhcccccCccccchhHHhhcCC----HHHHHHHHHHHHHHHhcCCCchhhhHHhHcCCHHHHHH
Q psy11659 74 SNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENID----AKELARLMQLILGCAINCNRKQNYITKIMELEESVQQV 149 (684)
Q Consensus 74 ~Nl~~i~~~i~~y~~~~l~~~~~~~~~pd~~~ia~~~d----~~el~~ll~lvl~~av~~~~~~~~I~~I~~L~~~~Q~~ 149 (684)
.|+..+++.+..||++.+|+.+. . +||...|+.+|. ...|..++.++|||||+|++++-||.+|+.++-++++.
T Consensus 2 ~n~~~~vR~~ke~~ee~lgqli~-~-lpd~~~lg~~p~s~ng~e~ik~ll~llLg~avqcp~kelfi~riq~ldlete~a 79 (1195)
T KOG4643|consen 2 KNFECVVRNMKETDEEGLGQLII-E-LPDDDMLGSTPSSSNGEEAIKQLLQLLLGSAVQCPTKELFIQRIQILDLETEMA 79 (1195)
T ss_pred ccHHHHHHHHHHHHHHhccceeE-e-cCchhhhccCccccchHHHHHHHHHHHHHhhhcCCcHHHHHHHHHhhhhHHHHH
Confidence 58999999999999999998554 3 899999999883 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCccH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy11659 150 IMQSIQELENLHGSTHSLNMSLDP----QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF- 224 (684)
Q Consensus 150 lm~~Iq~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~- 224 (684)
+|..|+++++..+.. -+++. .....+.++..+...++.+..++-+.....+.+.-+ ...+.-.+...+
T Consensus 80 ~~~~iaevtd~~~~v----leld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~e---~~le~vGl~~~~~ 152 (1195)
T KOG4643|consen 80 QMRTIAEVTDEECQV----LELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIAE---KLLELVGLEKKYR 152 (1195)
T ss_pred HHHHHHHhhhhHHhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcccceee
Confidence 999999998763211 11111 223356677777777766554443332222211100 001111111111
Q ss_pred -hhcC----CCc-----------------cccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 225 -QENF----VEP-----------------TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLE 282 (684)
Q Consensus 225 -~~~~----~~~-----------------~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~ 282 (684)
+..+ .++ ...+++.|++++++.-+.+. +++..+..++.++..+++++.++.
T Consensus 153 ~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll-------~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 153 ESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLL-------RLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred ccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 111 01356777777777776664 456666677777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------h
Q psy11659 283 ETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGN------W 356 (684)
Q Consensus 283 ~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~------~ 356 (684)
..+..++.++++++.+++.++... .+||.++-++.+++.++.+|+..|..+.+....|++++..+.+ +
T Consensus 226 ~ea~ra~~yrdeldalre~aer~d------~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tl 299 (1195)
T KOG4643|consen 226 DEAHRADRYRDELDALREQAERPD------TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATL 299 (1195)
T ss_pred HHHHhhhhhhhHHHHHHHhhhcCC------CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCCh
Confidence 999999999999999999776655 7899999999999999999999999999999999999988732 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKL 391 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L 391 (684)
..++-+|+.++.+++...+-...++.+|..|+..|
T Consensus 300 eseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 300 ESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 23334444444444443333333333333333333
No 3
>KOG0161|consensus
Probab=99.55 E-value=3e-09 Score=130.95 Aligned_cols=427 Identities=22% Similarity=0.303 Sum_probs=238.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHh
Q psy11659 175 VQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAE 254 (684)
Q Consensus 175 ~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e 254 (684)
.++...++.......+.+.....+++.++.....+...+...++.....+.. ..+.+..|+.++.++.+.+....
T Consensus 1043 ~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~-----l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1043 KRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQ-----LQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344344433333334344444555555444444444444444444333222 23456667777777777776555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHH
Q psy11659 255 SARDDYRIKLEIQSKQMEDLELKLNSLEE----TAGEARYLKDEVDILRETAEK-VEKYEGIIETYKKKAE-ELVDLKKQ 328 (684)
Q Consensus 255 ~~~~~~~~~~~~le~el~~l~~k~~~L~~----~a~~~~~L~deld~lr~~~~~-~~k~e~~le~~k~kle-el~~l~~~ 328 (684)
..+..+......|..++..++.++++.-. ...-......++..++...+. ....+..+..++++.. .+..+..+
T Consensus 1118 ~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~q 1197 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQ 1197 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555666666666666554411 111112222333334433322 2345566666666654 45666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------hchHHH----HHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHH
Q psy11659 329 VKQLESKNLSYIQQTLDLEEELKKN-------GNWKSQ----VDMYKKQMSELYNQFNEETKR-------ADKSEFENKK 390 (684)
Q Consensus 329 ~~~Le~~~~~l~~~~~~LEeel~~~-------~~~r~~----le~~k~qi~~l~~~l~e~~~~-------~~~le~e~~~ 390 (684)
+..+...+..+......++.+.... ...+.. ...+..++.+++..+++.... ..++..++..
T Consensus 1198 le~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~ 1277 (1930)
T KOG0161|consen 1198 LEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEE 1277 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 7777666665555544444444333 111111 112222333333333333322 2222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHHHHHHHHhhhhcc
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK 470 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~~ 470 (684)
+...+.+.+.....+......+...++++.. + +.. .+. .-..+-..+.++++|+..|+.+.+
T Consensus 1278 l~~~lee~e~~~~~~~r~~~~~~~qle~~k~-q--------le~------e~r---~k~~l~~~l~~l~~e~~~l~e~le 1339 (1930)
T KOG0161|consen 1278 LSRQLEEAEAKLSALSRDKQALESQLEELKR-Q--------LEE------ETR---EKSALENALRQLEHELDLLREQLE 1339 (1930)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------HHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222222222222210 0 000 000 014456778888888888887777
Q ss_pred cchhhhHHHHHhhH--------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh------HHHHhHHH
Q psy11659 471 DDIEGKLNIVNAKL--------------D-DVTQQVKMKTLENRKANQRILELEAELKERVTEDAA------GMKVKIFE 529 (684)
Q Consensus 471 ~~~~~~l~~L~~~L--------------e-~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~------~lk~kl~e 529 (684)
+..+.. ..|...+ + +......+++...+.+..++..++.+++........ .+.+.+.+
T Consensus 1340 ee~e~~-~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d 1418 (1930)
T KOG0161|consen 1340 EEQEAK-NELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELED 1418 (1930)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 665433 3443333 2 222335678888888888999999988888543222 22334477
Q ss_pred HHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHhhchhhhhchhh
Q psy11659 530 LQNEIKNLKEQINHQQEE-------HLEQGKLIEKLQDSITQKDSEIQDYEE---KNRKYIEKANSAFKLLDPTVQNVAA 599 (684)
Q Consensus 530 ~~~ele~~r~~l~~le~q-------~~~~~~~~~~l~~~L~~~e~el~~~e~---r~k~~~e~ak~~i~~l~~~~~~~~~ 599 (684)
+..++++.+..+.+++.+ +..+++....+...++....+.+..++ +++..++.+.+.+.++...++. +
T Consensus 1419 ~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~--l 1496 (1930)
T KOG0161|consen 1419 LQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKN--L 1496 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 777887777666666655 344778889999999999999988877 5777788888888888888876 8
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659 600 LNELKNLRKKNDDKDKMLDDLEKTLEKK 627 (684)
Q Consensus 600 ~~ei~~Lr~ql~e~e~~i~~LE~~~~~~ 627 (684)
..++.+|..++.+++++++.||+..+..
T Consensus 1497 ~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1497 SQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999987765
No 4
>KOG0161|consensus
Probab=99.55 E-value=1.3e-09 Score=134.22 Aligned_cols=398 Identities=20% Similarity=0.259 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFV--EPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLE 265 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~--~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~ 265 (684)
..-++..++.++..++.+|...+..+..|+..+..++.+.+. +...+....+..++++++.++... .+.+ .
T Consensus 1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e------~r~k-~ 1318 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEE------TREK-S 1318 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-H
Confidence 344455556666666666666666777777777666665542 112334445555555555554321 1221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLD 345 (684)
Q Consensus 266 ~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~ 345 (684)
.+...+..++.+.+.|. ..+.++.+....-...+++....+..++.|+++.. ....+++++....+...+..
T Consensus 1319 ~l~~~l~~l~~e~~~l~------e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~--~~~~eelee~kk~l~~~lq~ 1390 (1930)
T KOG0161|consen 1319 ALENALRQLEHELDLLR------EQLEEEQEAKNELERKLSKANAELAQWKKKFEEEV--LQRLEELEELKKKLQQRLQE 1390 (1930)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHH
Confidence 22223333333222222 11112222222223355677777788888877542 23466677777777766666
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11659 346 LEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQ 425 (684)
Q Consensus 346 LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~ 425 (684)
+++.+..++.....++..+. .++..+.......+........+..++....+-+.......+.+... ++.++..
T Consensus 1391 ~qe~~e~~~~~~~~Lek~k~---~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~E---ld~aq~e 1464 (1930)
T KOG0161|consen 1391 LEEQIEAANAKNASLEKAKN---RLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAE---LDAAQRE 1464 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 66666665333333332222 22222222211111111111111111111111111111111111111 1111101
Q ss_pred ccchhhhhhcccccccccccC----ChHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy11659 426 QSKSAELNTLGENLDLSEDSV----PITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKA 501 (684)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~e~~----~~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l 501 (684)
... .+++.+ .+.++.+.+..+.++|+.|. .++.+|...+.++++.+++|++..+.+
T Consensus 1465 ~r~------------~~tel~kl~~~lee~~e~~e~l~renk~l~--------~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1465 LRQ------------LSTELQKLKNALEELLEQLEELRRENKNLS--------QEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred HHH------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 001111 25777889999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh----hHhHHH-------------HhHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHH
Q psy11659 502 NQRILELEAELKERVTE----DAAGMK-------------VKIFELQNEIKNLKE----QINHQQEEHLEQGKLIEKLQD 560 (684)
Q Consensus 502 ~~~i~eLq~qle~l~~~----~~~~lk-------------~kl~e~~~ele~~r~----~l~~le~q~~~~~~~~~~l~~ 560 (684)
..++.+|+.+++++... ++..++ +++.+..++++..+. .+..++..+++..+...++-.
T Consensus 1525 e~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r 1604 (1930)
T KOG0161|consen 1525 EQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALR 1604 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 99999999999999532 222222 244666666666655 566667666666666667666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchh--------hHHHHHHHHHhHHhhhhhHHHHHHHHhh
Q psy11659 561 SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA--------ALNELKNLRKKNDDKDKMLDDLEKTLEK 626 (684)
Q Consensus 561 ~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~--------~~~ei~~Lr~ql~e~e~~i~~LE~~~~~ 626 (684)
.-++++.|+..++..+.......-++++.+..-+..+. ...-.++++.++...++++..|+.+++.
T Consensus 1605 ~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~ee 1678 (1930)
T KOG0161|consen 1605 SKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEE 1678 (1930)
T ss_pred hhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777655555444444444433322211 2333566777777777777777776554
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.33 E-value=1.9e-06 Score=104.50 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=8.3
Q ss_pred hHHHHHHHHHhHHhh
Q psy11659 599 ALNELKNLRKKNDDK 613 (684)
Q Consensus 599 ~~~ei~~Lr~ql~e~ 613 (684)
+..++.+++.++.+.
T Consensus 625 ~~~~l~~~r~~i~~l 639 (880)
T PRK02224 625 RRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666666554
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.22 E-value=9.1e-06 Score=98.56 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659 599 ALNELKNLRKKNDDKDKMLDDLEKTLEKK 627 (684)
Q Consensus 599 ~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~ 627 (684)
+..++..+...+......+..++..+...
T Consensus 651 l~~~~~~~~~~~~~l~~~l~~~~~~~~~l 679 (880)
T PRK02224 651 AREDKERAEEYLEQVEEKLDELREERDDL 679 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555655655555556555554
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.18 E-value=1.5e-06 Score=108.60 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=44.5
Q ss_pred HHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 530 LQNEIKNLK----EQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAF 587 (684)
Q Consensus 530 ~~~ele~~r----~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i 587 (684)
+.++|+.+. +++.++..+++|+...+..|...+..++..++..-.+.+..|..+...+
T Consensus 980 aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f 1041 (1179)
T TIGR02168 980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQV 1041 (1179)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777 8999999999999999999999999999999843322166666555443
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=99.18 E-value=4.4e-05 Score=92.71 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 259 DYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK 292 (684)
Q Consensus 259 ~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~ 292 (684)
.+...+..++.++..+..+...+......+..++
T Consensus 256 ~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~ 289 (880)
T PRK03918 256 KLEEKIRELEERIEELKKEIEELEEKVKELKELK 289 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443333333333
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.17 E-value=2e-06 Score=107.63 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy11659 499 RKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRK 578 (684)
Q Consensus 499 ~~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~ 578 (684)
..+..++..++..+..+++. ++ .+..+|+.+.+++.++..+++++...+..+...+..++..+. ..|..
T Consensus 954 ~~l~~~l~~l~~~i~~l~~v---N~-----~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~---~~f~~ 1022 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALEPV---NM-----LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR---EVFME 1022 (1164)
T ss_pred HHHHHHHHHHHHHHHHcCCC---Ch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 34555666666666666543 44 677999999999999999999999999999999999988776 55666
Q ss_pred HHHHHHHH
Q psy11659 579 YIEKANSA 586 (684)
Q Consensus 579 ~~e~ak~~ 586 (684)
.|..+...
T Consensus 1023 ~f~~~~~~ 1030 (1164)
T TIGR02169 1023 AFEAINEN 1030 (1164)
T ss_pred HHHHHHHH
Confidence 65555443
No 10
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.14 E-value=6.2e-12 Score=148.73 Aligned_cols=394 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CccccchHHHHHHHHHHHHHHHHHhhhHHHH
Q psy11659 183 QTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFV--EPTNKGNSSMRRQMDALKEELFKAESARDDY 260 (684)
Q Consensus 183 ~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~--~~~~~~~~~L~~qleel~e~l~~~e~~~~~~ 260 (684)
..+..+..++..++.+.++.+.+|...+.+|..|+..|...+.+.+. +...+....|..+|++++..+...-..+.
T Consensus 183 K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~-- 260 (859)
T PF01576_consen 183 KQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQ-- 260 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhh--
Confidence 34445666677888888999999999999999999999999987774 33345566777888887777653222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 261 RIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR----ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKN 336 (684)
Q Consensus 261 ~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr----~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~ 336 (684)
.+...+..+...++ .|++.++.-. ..-..+.++..++..++++++.-. ...+..+++..
T Consensus 261 -----~L~~~l~~le~e~~----------~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~--~~~~EelEeaK 323 (859)
T PF01576_consen 261 -----ALEKQLRQLEHELE----------QLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA--EQRTEELEEAK 323 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----hhHHHHHHHHHHHH----------HHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hhhHHHHHHHH
Confidence 22233333332222 2222222111 111245567778888888877422 23355566555
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 337 LSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN 416 (684)
Q Consensus 337 ~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~ 416 (684)
..+...+..+.+.+. +...++..++..+.+|...+.++..++++.......|....
T Consensus 324 KkL~~~L~el~e~le------------------------~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKq 379 (859)
T PF01576_consen 324 KKLERKLQELQEQLE------------------------EANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQ 379 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444433 33444555666666677777777777777776666666665
Q ss_pred HHHHHH----hhhccc-hhhhhhccc-ccccccccC----ChHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHH
Q psy11659 417 EELKCC----QLQQSK-SAELNTLGE-NLDLSEDSV----PITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDD 486 (684)
Q Consensus 417 ~eL~~~----q~~~~~-~~~l~~~~~-~~~~~~e~~----~~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~ 486 (684)
..|... +..... ..+++.+.. ....+++++ .+.++...+..++++|+.|. .+|.+|...+++
T Consensus 380 r~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~--------~El~dl~~q~~~ 451 (859)
T PF01576_consen 380 RKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQ--------DELEDLTSQLDD 451 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------Hhhccchhhhhh
Confidence 555321 100000 011111100 011122332 25788899999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hHhHH----HHhHHHHHHHHHHHHH----HHHHHH
Q psy11659 487 VTQQVKMKTLENRKANQRILELEAELKERVTE-------------DAAGM----KVKIFELQNEIKNLKE----QINHQQ 545 (684)
Q Consensus 487 ~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~-------------~~~~l----k~kl~e~~~ele~~r~----~l~~le 545 (684)
+++.++.|+..++.+..++.+++.+++++... ....+ .++|.+..++++.+|. .+..|+
T Consensus 452 ~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le 531 (859)
T PF01576_consen 452 AGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLE 531 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999998311 12222 2345666677777754 778888
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchh--------hHHHHHHHHHhHHhhhhhH
Q psy11659 546 EEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA--------ALNELKNLRKKNDDKDKML 617 (684)
Q Consensus 546 ~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~--------~~~ei~~Lr~ql~e~e~~i 617 (684)
..++...+....+....++++.++..++.++........+.++.+..-+..+. .....++++.++...++++
T Consensus 532 ~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~ 611 (859)
T PF01576_consen 532 AELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRL 611 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777778888888888887766543333222222222222111110 2223555666666666777
Q ss_pred HHHHHHHhhH
Q psy11659 618 DDLEKTLEKK 627 (684)
Q Consensus 618 ~~LE~~~~~~ 627 (684)
..|..++...
T Consensus 612 ~~l~~elee~ 621 (859)
T PF01576_consen 612 RALQAELEEL 621 (859)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.12 E-value=8.1e-06 Score=101.15 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11659 500 KANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKY 579 (684)
Q Consensus 500 ~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~ 579 (684)
.+..++..++..+..++++ ++ .|.++|+...++++++..+++++...+..+...+.+++...+ .+|...
T Consensus 946 ~~~~~i~~le~~i~~lg~V---N~-----~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~---~~f~~~ 1014 (1163)
T COG1196 946 ELEREIERLEEEIEALGPV---NL-----RAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR---ERFKET 1014 (1163)
T ss_pred HHHHHHHHHHHHHHhccCC---Ch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4556666666666666655 34 788999999999999999999999999999999999999988 788888
Q ss_pred HHHHHHHHhhc
Q psy11659 580 IEKANSAFKLL 590 (684)
Q Consensus 580 ~e~ak~~i~~l 590 (684)
|..+..-...+
T Consensus 1015 f~~In~~F~~i 1025 (1163)
T COG1196 1015 FDKINENFSEI 1025 (1163)
T ss_pred HHHHHHHHHHH
Confidence 88777665544
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=0.00015 Score=91.23 Aligned_cols=89 Identities=9% Similarity=0.120 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccccchHHHHHHHHHHHHHHHHHhhhH
Q psy11659 179 VAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENF-VEPTNKGNSSMRRQMDALKEELFKAESAR 257 (684)
Q Consensus 179 ~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~-~~~~~~~~~~L~~qleel~e~l~~~e~~~ 257 (684)
...+..+....+.+...+..++..+..+..+...+..++......+.+.. ...-...+..++..++.....+...++..
T Consensus 583 ~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~ 662 (1311)
T TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGAT 662 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777777777777788888888888888887777776321 11111244555566666655555444444
Q ss_pred HHHHHHHHHH
Q psy11659 258 DDYRIKLEIQ 267 (684)
Q Consensus 258 ~~~~~~~~~l 267 (684)
.-|...++..
T Consensus 663 ~~~~k~ie~a 672 (1311)
T TIGR00606 663 AVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=0.00024 Score=89.37 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHH
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLEN 498 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~ 498 (684)
+.++...+..++.+...++ .++..++...+.....+..|+...
T Consensus 824 ~~ele~ei~~~~~el~~l~--------~~~e~l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVV--------SKIELNRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888777777776 444455555555444444443333
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=99.03 E-value=0.00025 Score=86.21 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHH
Q psy11659 111 DAKELARLMQLILG 124 (684)
Q Consensus 111 d~~el~~ll~lvl~ 124 (684)
+|.+..+++.=++|
T Consensus 143 ~~~~r~~~~~~~~~ 156 (880)
T PRK03918 143 SDESREKVVRQILG 156 (880)
T ss_pred CcHHHHHHHHHHhC
Confidence 34555555544444
No 15
>KOG4674|consensus
Probab=99.01 E-value=0.00012 Score=89.80 Aligned_cols=164 Identities=18% Similarity=0.268 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh--hhHhHHHHhH
Q psy11659 453 QKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLEN---RKANQRILELEAELKERVT--EDAAGMKVKI 527 (684)
Q Consensus 453 ~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~---~~l~~~i~eLq~qle~l~~--~~~~~lk~kl 527 (684)
.++.-+.+||..|+ .+++.+...++++.+.....+... ...-.++..+...+..+.. +....|+.-+
T Consensus 1167 tk~~~lk~e~~~L~--------qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1167 TKLDTLKRENARLK--------QQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREEN 1238 (1822)
T ss_pred hhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455666666666 565566666666666555555444 2223344444444444421 1122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHhhchhhhhchhhHHHHH
Q psy11659 528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEE---KNRKYIEKANSAFKLLDPTVQNVAALNELK 604 (684)
Q Consensus 528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~---r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~ 604 (684)
......+..++..+..+.....-+...+.++...+.....++.-++. +|+..+.....-.+..++..-. .+..++.
T Consensus 1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~-kL~~ei~ 1317 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE-KLKSEIS 1317 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHH
Confidence 12222222222233332222222333344444444444444433332 4444444444443333332111 2344555
Q ss_pred HHHHhHHhhhhhHHHHHHHHh
Q psy11659 605 NLRKKNDDKDKMLDDLEKTLE 625 (684)
Q Consensus 605 ~Lr~ql~e~e~~i~~LE~~~~ 625 (684)
.|.+-+..+++.+..+...+.
T Consensus 1318 ~Lk~el~~ke~~~~el~~~~~ 1338 (1822)
T KOG4674|consen 1318 RLKEELEEKENLIAELKKELN 1338 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666655555555555433
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.97 E-value=4.5e-05 Score=95.57 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659 529 ELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKL 589 (684)
Q Consensus 529 e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~ 589 (684)
.+...|+.+..++.+|....+++...+.++...+........ +.|...++....+...
T Consensus 990 ~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~---~~F~~v~~~f~~~F~~ 1047 (1179)
T TIGR02168 990 AAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR---ERFKDTFDQVNENFQR 1047 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344677777788888888877777777777777777764443 3444444444444433
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.94 E-value=0.00014 Score=84.43 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11659 539 EQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSA 586 (684)
Q Consensus 539 ~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~ 586 (684)
..+..+...++.+..++...+..|...+..+.+++.-.++.++++..+
T Consensus 671 ~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l~m 718 (775)
T PF10174_consen 671 AALEKLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVLEM 718 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555556667777777888888887777777877777665
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.90 E-value=0.00045 Score=80.33 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659 181 ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQEN 227 (684)
Q Consensus 181 ~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~ 227 (684)
+.-++..+.+.+...+.+++..+..++...+....++..|...+...
T Consensus 122 E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~ 168 (775)
T PF10174_consen 122 ERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSK 168 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455555666666677777777777777777888887777533
No 19
>KOG0971|consensus
Probab=98.89 E-value=5e-05 Score=85.63 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhHHhhhhhHHHHHHHHhhH------HHHHHHHHHH--HHHHHHHHHHHhHhhhh
Q psy11659 599 ALNELKNLRKKNDDKDKMLDDLEKTLEKK------EQQEKLIATA--FYNLALQKQRQTADNRL 654 (684)
Q Consensus 599 ~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~------~~E~~l~~~a--~y~~~~~~~~~~~~~r~ 654 (684)
+..-+..|..|+++...+...++.+.-.- ..-+|++.++ -|--....|=++|+=+.
T Consensus 530 fRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~dyk~~fa~skayaraie~QlrqiEv~~ 593 (1243)
T KOG0971|consen 530 FRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIEVAQ 593 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55667778888887777777776664432 3445555544 44444444444555443
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.88 E-value=0.00031 Score=77.48 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q psy11659 77 KKINEGIVDYFQ 88 (684)
Q Consensus 77 ~~i~~~i~~y~~ 88 (684)
|.=|+++.+||.
T Consensus 44 KVGw~s~rdY~T 55 (546)
T PF07888_consen 44 KVGWSSTRDYYT 55 (546)
T ss_pred ecCCCchhheee
Confidence 344567778873
No 21
>KOG0976|consensus
Probab=98.88 E-value=0.00037 Score=77.81 Aligned_cols=122 Identities=10% Similarity=0.120 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhh--HhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11659 503 QRILELEAELKERVTED--AAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYI 580 (684)
Q Consensus 503 ~~i~eLq~qle~l~~~~--~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~ 580 (684)
....+++.|++.+++.- ....|+.-..+..|+.+..+.++-|...+.+........+....-.+..++...++..+-+
T Consensus 386 ~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv 465 (1265)
T KOG0976|consen 386 ELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMV 465 (1265)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHH
Confidence 33344555555554331 1111222234444455544444444444333333444444333333444443333333334
Q ss_pred HHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659 581 EKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK 627 (684)
Q Consensus 581 e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~ 627 (684)
...+.....+..+.+ +..++..|+..+.--.++|+.|+.++.+.
T Consensus 466 ~rir~l~~sle~qrK---Veqe~emlKaen~rqakkiefmkEeiQet 509 (1265)
T KOG0976|consen 466 DRIRALMDSLEKQRK---VEQEYEMLKAENERQAKKIEFMKEEIQET 509 (1265)
T ss_pred HHHHHHhhChhhhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433222 67788888888887788888888887776
No 22
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.80 E-value=8.7e-10 Score=130.66 Aligned_cols=175 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccchh-------------hhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 451 LRQKLVRLTHENNMLQMNQKDDIE-------------GKLNIVNAKLD-DVTQQVKMKTLENRKANQRILELEAELKERV 516 (684)
Q Consensus 451 l~~~l~~Le~Enk~Lr~~~~~~~~-------------~~l~~L~~~Le-~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~ 516 (684)
+...+..+++++..|+.+.++... .++..+...++ +.......|+...+.+..++.+++.+++...
T Consensus 262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~ 341 (859)
T PF01576_consen 262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN 341 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666655543321 12222222333 2223356778888888888888888888885
Q ss_pred hhhHhHH--HHhH----HHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHH
Q psy11659 517 TEDAAGM--KVKI----FELQNEIKNLKEQINHQQEE-------HLEQGKLIEKLQDSITQKDSEIQDYEE---KNRKYI 580 (684)
Q Consensus 517 ~~~~~~l--k~kl----~e~~~ele~~r~~l~~le~q-------~~~~~~~~~~l~~~L~~~e~el~~~e~---r~k~~~ 580 (684)
......- +.+| .++..++++.+.....|+++ +.+|..+...+...+.....+.+.+.+ .++..+
T Consensus 342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~l 421 (859)
T PF01576_consen 342 AKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNEL 421 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 4432221 2333 77777788877766666654 344677778888888888888887777 578888
Q ss_pred HHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659 581 EKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK 627 (684)
Q Consensus 581 e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~ 627 (684)
+....-+..++..+.. +..+|.+|..++++.++.++.|++..+..
T Consensus 422 ee~~e~~e~lere~k~--L~~El~dl~~q~~~~~k~v~eLek~kr~L 466 (859)
T PF01576_consen 422 EELQEQLEELERENKQ--LQDELEDLTSQLDDAGKSVHELEKAKRRL 466 (859)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH--HHHhhccchhhhhhhccchHHHHHHHHHH
Confidence 8888888888888876 88999999999999999999998887764
No 23
>PRK01156 chromosome segregation protein; Provisional
Probab=98.75 E-value=0.002 Score=78.34 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 389 KKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 389 ~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
..+..++..+..++..+..++..+...+.++.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.73 E-value=0.00082 Score=83.63 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=16.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11659 541 INHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYI 580 (684)
Q Consensus 541 l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~ 580 (684)
++.....++.+..+...+..+++.+..-+..+..+.+..|
T Consensus 972 ~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f 1011 (1163)
T COG1196 972 YEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERF 1011 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443333333333
No 25
>KOG0933|consensus
Probab=98.72 E-value=0.00051 Score=78.97 Aligned_cols=162 Identities=22% Similarity=0.299 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 259 DYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVE------KYEGIIETYKKKAEELVDLKKQVKQL 332 (684)
Q Consensus 259 ~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~------k~e~~le~~k~kleel~~l~~~~~~L 332 (684)
+.+.++...++++..+..++..+...+..++.|+.+++...|...-+. .....+..++.-++++.++..++++.
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~ 760 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEK 760 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888888888888888999999999988877654432 33455567777777788888899988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 333 ESKNLSYIQQTLDLEEELKKNGNW-KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDS 411 (684)
Q Consensus 333 e~~~~~l~~~~~~LEeel~~~~~~-r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~ 411 (684)
..........+..+|..+..+..- ...+..+.+.+..+..++.+.....++-+.+...++-+++.++.+..........
T Consensus 761 ~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~ 840 (1174)
T KOG0933|consen 761 ERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQ 840 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999998887653 3467777778888888888888888888888888888888888887777777777
Q ss_pred HHHHHHHHH
Q psy11659 412 LKETNEELK 420 (684)
Q Consensus 412 L~e~~~eL~ 420 (684)
+...+..|.
T Consensus 841 ~~~~~~~l~ 849 (1174)
T KOG0933|consen 841 LEKQISSLK 849 (1174)
T ss_pred HHHHHHHHH
Confidence 777766665
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.68 E-value=0.001 Score=73.47 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEE 222 (684)
Q Consensus 184 ~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~ 222 (684)
....++.+|.+.+..|+.++..|..+...|..++...+.
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e 185 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE 185 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555544433
No 27
>KOG4643|consensus
Probab=98.59 E-value=0.0034 Score=72.37 Aligned_cols=145 Identities=18% Similarity=0.242 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhc-
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTL- 435 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~- 435 (684)
....+.++.+++.+..+-.. -.++.++-.++.++.++..+++..+.....|.+.+.-|...+.+-....++.+.
T Consensus 277 leekeMLeeQLq~lrarse~-----~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~ 351 (1195)
T KOG4643|consen 277 LEEKEMLEEQLQKLRARSEG-----ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIF 351 (1195)
T ss_pred HHHHHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhh
Confidence 44455555555555433221 467888999999999999999988888888888887776433222221122110
Q ss_pred -ccccccccccCC--hHHH-HHHHHHHHHHHHHhhhhcccchhhhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 436 -GENLDLSEDSVP--ITEL-RQKLVRLTHENNMLQMNQKDDIEGKLNIVNA-KLDDVTQQVKMKTLENRKANQRILELEA 510 (684)
Q Consensus 436 -~~~~~~~~e~~~--~~el-~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~-~Le~~~~~~~~Le~~~~~l~~~i~eLq~ 510 (684)
.+... ..+... -.+| ..++.++.-||..+- ..+.++++ .++....+.-+|+++.+.+..++..|+.
T Consensus 352 se~~E~-en~Sl~~e~eqLts~ralkllLEnrrlt--------~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Lee 422 (1195)
T KOG4643|consen 352 SENEEL-ENESLQVENEQLTSDRALKLLLENRRLT--------GTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEE 422 (1195)
T ss_pred hcchhh-hhhhHHHHHHHhhhHHHHHHHHHhHHHH--------HHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHH
Confidence 00000 000000 0111 134445555565554 44444432 3445555555666655555555555555
Q ss_pred HHHHH
Q psy11659 511 ELKER 515 (684)
Q Consensus 511 qle~l 515 (684)
.+..+
T Consensus 423 ri~ql 427 (1195)
T KOG4643|consen 423 RINQL 427 (1195)
T ss_pred HHHHH
Confidence 55544
No 28
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.59 E-value=0.0034 Score=72.13 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy11659 529 ELQN-EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQ 564 (684)
Q Consensus 529 e~~~-ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~ 564 (684)
++.. +++....+++++..+.+++......++..+..
T Consensus 472 ~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 472 EAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 88888889999988888877666666655544
No 29
>KOG4674|consensus
Probab=98.50 E-value=0.01 Score=73.61 Aligned_cols=181 Identities=23% Similarity=0.301 Sum_probs=83.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKL----NSLEETAGEARYLKDEVDILRETAEKVEKYE 309 (684)
Q Consensus 234 ~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~----~~L~~~a~~~~~L~deld~lr~~~~~~~k~e 309 (684)
.++..|..-++.++.+...++.....+...+...+..+..+..++ ..+..+..++..|+.+-..+++.-.++ .
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL---~ 765 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERL---S 765 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 345555666666666555555444444444433333332222222 122223344555555555555433322 2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH----HHHHHHHHHH
Q psy11659 310 GIIETYKKKAEELV----DLKKQVKQLES----KNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQM----SELYNQFNEE 377 (684)
Q Consensus 310 ~~le~~k~kleel~----~l~~~~~~Le~----~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi----~~l~~~l~e~ 377 (684)
.+++.|......+. .+......++. ....+..++..|+.++..+ +..+......+ ..+...+...
T Consensus 766 ~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~l---k~klq~~~~~~r~l~~~~~~~l~~~ 842 (1822)
T KOG4674|consen 766 QELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKL---KKKLQEKSSDLRELTNSLEKQLENA 842 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 33333332222221 11111111111 1223445555555555555 33333333222 2333445555
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 378 TKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 378 ~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
...++.+...+..+...+..+....+.+..+...|...+....
T Consensus 843 ~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~ 885 (1822)
T KOG4674|consen 843 QNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAK 885 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5666666666666666666666666666666666666665544
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.47 E-value=0.0011 Score=67.38 Aligned_cols=224 Identities=20% Similarity=0.243 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--cccchHHHHHHHHHHHHHHHHHhhhHHH
Q psy11659 182 LQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEP--TNKGNSSMRRQMDALKEELFKAESARDD 259 (684)
Q Consensus 182 l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~--~~~~~~~L~~qleel~e~l~~~e~~~~~ 259 (684)
+..+..+.|....++..+...+............++..|..++...+... +..++......|+.+.......+..+..
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888888777778888888888888777665322 1233444444555444444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 260 YRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSY 339 (684)
Q Consensus 260 ~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l 339 (684)
+..+.......+..+..++......+. .....++.. ..++..++..++....+.+. +..++..|+......
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~e---e~e~k~~E~---~rkl~~~E~~Le~aEeR~e~---~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAE---EAERKYEEV---ERKLKVLEQELERAEERAEA---AESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHH---HHHHHHHHC---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHH
Confidence 333322222222223222222221111 111111111 22344445555555555333 346777777777777
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 340 IQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 340 ~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~ 417 (684)
...+..++.....+ -...+.|..+|..|..++.+...+++..+..+..|...+..++.++.........+...++
T Consensus 154 ~~~lk~lE~~~~~~---~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 154 GNNLKSLEASEEKA---SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666655 5667888888999999999988888888888888888888888887776666666555443
No 31
>KOG0976|consensus
Probab=98.45 E-value=0.0061 Score=68.45 Aligned_cols=43 Identities=12% Similarity=-0.017 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 458 LTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILEL 508 (684)
Q Consensus 458 Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eL 508 (684)
|..+|+.|. .++..++-.|-++++....+......+..+...+
T Consensus 321 lh~enmklt--------rqkadirc~LlEarrk~egfddk~~eLEKkrd~a 363 (1265)
T KOG0976|consen 321 LHLENMKLT--------RQKADIRCALLEARRKAEGFDDKLNELEKKRDMA 363 (1265)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 455666665 5555555555555555544444444444444333
No 32
>KOG0971|consensus
Probab=98.44 E-value=0.0074 Score=68.79 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhchhh
Q psy11659 575 KNRKYIEKANSAFKLLDPT 593 (684)
Q Consensus 575 r~k~~~e~ak~~i~~l~~~ 593 (684)
+|+..+....+.+..+.+.
T Consensus 529 KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 529 KFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5666666666666655553
No 33
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.42 E-value=0.0043 Score=65.86 Aligned_cols=59 Identities=29% Similarity=0.392 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 363 ~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
|+.++.++..........+.....++..++..+..+..+++.+......|+..+.+++.
T Consensus 193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 56667777777666666777777777888888888888888887777777777777753
No 34
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.42 E-value=0.0087 Score=68.77 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy11659 235 GNSSMRRQMDALKEELFKAESARDDYRIKLE 265 (684)
Q Consensus 235 ~~~~L~~qleel~e~l~~~e~~~~~~~~~~~ 265 (684)
++...+..+..+...+...+.........+.
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~ 129 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQ 129 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444444433
No 35
>PRK01156 chromosome segregation protein; Provisional
Probab=98.39 E-value=0.016 Score=70.61 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=5.4
Q ss_pred hHHhHHHHH
Q psy11659 8 QSELCNILL 16 (684)
Q Consensus 8 ~~~~~~~l~ 16 (684)
|+.+.+|+.
T Consensus 36 KSsileAI~ 44 (895)
T PRK01156 36 KSSIVDAIR 44 (895)
T ss_pred HHHHHHHHH
Confidence 456666655
No 36
>KOG0977|consensus
Probab=98.33 E-value=0.0061 Score=67.52 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=48.1
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLE 550 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~ 550 (684)
+++..+...+...+.++.+|+..+..+..+|.+|..++.+.. ....+.|.+.+.++.++|++...+-.++..
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~----r~~e~~L~~kd~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQ----RSFEQALNDKDAEIAKMREECQQLSVELQK 367 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhh----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666667777777778888888888888888777642 122344567777778888777776644433
No 37
>KOG0612|consensus
Probab=98.33 E-value=0.017 Score=68.33 Aligned_cols=58 Identities=12% Similarity=0.287 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVD 296 (684)
Q Consensus 239 L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld 296 (684)
++.++.+..+.+...+..+.++...+..++.++..++.+++.+......+..++.+++
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555556666666666666666666666666666666666655544444444444444
No 38
>KOG0977|consensus
Probab=98.28 E-value=0.0043 Score=68.74 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 337 LSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN 416 (684)
Q Consensus 337 ~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~ 416 (684)
..+...+..|.+++..+ +...+...+.......++......+..++.++..++.++..++.++.++..+...+...+
T Consensus 109 a~~e~ei~kl~~e~~el---r~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 109 AKLEIEITKLREELKEL---RKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33333344444443333 333333333333333344444444555555555566666666666666666666665555
Q ss_pred HHHH
Q psy11659 417 EELK 420 (684)
Q Consensus 417 ~eL~ 420 (684)
..++
T Consensus 186 ~~~r 189 (546)
T KOG0977|consen 186 ARAR 189 (546)
T ss_pred HHHH
Confidence 5443
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.23 E-value=0.042 Score=68.76 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 312 IETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 312 le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
++.+...++.+..++.++..++.....+......++.+....
T Consensus 344 i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~ 385 (1201)
T PF12128_consen 344 IEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKL 385 (1201)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666566666666666666666666655555554443
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.16 E-value=0.017 Score=61.28 Aligned_cols=51 Identities=25% Similarity=0.243 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 369 ~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
+++.++.........++.++..++..++.....+..+..++..|++.+.-+
T Consensus 86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555555555544433
No 41
>KOG0250|consensus
Probab=98.14 E-value=0.011 Score=69.45 Aligned_cols=248 Identities=19% Similarity=0.268 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------HHHHHHHH
Q psy11659 240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYL---KDEVDILRETA------EKVEKYEG 310 (684)
Q Consensus 240 ~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L---~deld~lr~~~------~~~~k~e~ 310 (684)
-.+|++..+.+......++.....+..++.++..+..++.+....-.....+ .+.+..|+.+. +....+.+
T Consensus 206 aT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~ 285 (1074)
T KOG0250|consen 206 ATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNN 285 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888887777788888888888888888877777666544433333 33333333321 12224444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy11659 311 IIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKK 390 (684)
Q Consensus 311 ~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~ 390 (684)
..+..+.+-+.+..+...++.....+..+.......+.++..+ +...+....++..+...+.....+...++.+
T Consensus 286 ~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~---~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~--- 359 (1074)
T KOG0250|consen 286 QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL---KDEVDAQDEEIEEARKDLDDLRREVNDLKEE--- 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4455555555555566666666666666666666666555544 4444444445555554444444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHHHHHHHHhhhhcc
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK 470 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~~ 470 (684)
+...+.....+....+.++..|..++..-.+... ..++... . .+..|..++..++..+..|+
T Consensus 360 ----~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~-~~~~e~e--~-------k~~~L~~evek~e~~~~~L~---- 421 (1074)
T KOG0250|consen 360 ----IREIENSIRKLKKEVDRLEKQIADLEKQTNNELG-SELEERE--N-------KLEQLKKEVEKLEEQINSLR---- 421 (1074)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHH--H-------HHHHHHHHHHHHHHHHHHHH----
Confidence 3333333333334444444444444321000000 0000000 0 01233344444444444444
Q ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 471 ~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.++.++...+..........+.....+...+......+..+
T Consensus 422 ----~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 422 ----EELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555566666666666666555
No 42
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.08 E-value=0.044 Score=63.26 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK 404 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~ 404 (684)
....+|++.|-.++..+..|......+..++.++..+...+.-++.++.++..-.+-.+ +.|.+.++.++.+++.
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae---~qleEALesl~~EReq 171 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAE---KQLEEALESLKSEREQ 171 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34467777788888888888777777777788888888888888888887765444333 3466777777766553
No 43
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.02 E-value=0.011 Score=60.09 Aligned_cols=160 Identities=21% Similarity=0.302 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 235 GNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIET 314 (684)
Q Consensus 235 ~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~ 314 (684)
++..++.+++.+.+.+...+..+.....+....+.++..++.+ +..+.++++.... ++......+..
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rr----------i~~lE~~le~~ee---rL~~~~~kL~~ 68 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRR----------IQLLEEELERAEE---RLEEATEKLEE 68 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHCCCHHHHC---CCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHH---HHHHHHHHHHH
Confidence 3455666666666666555444444444444444444444433 3344444443322 11122222232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy11659 315 YKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEK 394 (684)
Q Consensus 315 ~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~ 394 (684)
..+...+ ..+..+.++........++..|+.++..+ +....+....+.+...++..++..+.....+
T Consensus 69 ~e~~~de---~er~~k~lE~r~~~~eeri~~lE~~l~ea----------~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR 135 (237)
T PF00261_consen 69 AEKRADE---SERARKVLENREQSDEERIEELEQQLKEA----------KRRAEEAERKYEEVERKLKVLEQELERAEER 135 (237)
T ss_dssp HHHHHHH---HCHHHHHHHHHHHHHHHHHHHCHHHHHHH----------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 23455566666666666666666666555 3334455566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 395 VTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 395 l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
+..++.....+..++..+...+..|+
T Consensus 136 ~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 136 AEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 66666666655555555555444443
No 44
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.01 E-value=0.021 Score=58.32 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQR 400 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~ 400 (684)
....+.+++.+..++..+.+....++.+..+...++..+.++..
T Consensus 199 ~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 199 FEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
No 45
>KOG0996|consensus
Probab=98.00 E-value=0.073 Score=63.03 Aligned_cols=113 Identities=21% Similarity=0.226 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcCCCcc--ccchHHHHHHHHHHHHHHHHHhhhHH
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEKS-------CLVEEKRRLEERFQENFVEPT--NKGNSSMRRQMDALKEELFKAESARD 258 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~~-------~l~~E~~~l~~~~~~~~~~~~--~~~~~~L~~qleel~e~l~~~e~~~~ 258 (684)
..+.+..+..+++.+-....+... +|..+++..+...++.++.|. ...+..++.++++|...+...+...+
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555444444444 444444444444444444443 34455666666666665544433333
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy11659 259 D----YRIKLEIQSKQMEDLELKLNSLE----ETAGEARYLKDEVDILRE 300 (684)
Q Consensus 259 ~----~~~~~~~le~el~~l~~k~~~L~----~~a~~~~~L~deld~lr~ 300 (684)
+ +..+-+....++..++.++..+. ....+.+..+.+++.|..
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~ 514 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLS 514 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333334444444444443222 223344455555555444
No 46
>KOG0995|consensus
Probab=97.99 E-value=0.046 Score=60.22 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy11659 264 LEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAE-ELVDLKKQVKQLESKNLSYIQQ 342 (684)
Q Consensus 264 ~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kle-el~~l~~~~~~Le~~~~~l~~~ 342 (684)
++.+++...++..++.+..+.......|+.....++....+..-+...+...+..+. .+..++..++..++.+..+...
T Consensus 237 ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~ 316 (581)
T KOG0995|consen 237 IEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKE 316 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333444444444444433333333333332222222 3444556666666666666666
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 343 TLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL 405 (684)
Q Consensus 343 ~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l 405 (684)
...|...++.-+-.-.+++....+...+.+.+.......+.+..+.-.+..+++..-.+.+..
T Consensus 317 ~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~ 379 (581)
T KOG0995|consen 317 NDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKK 379 (581)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666665554444555555555555555555555555555555544444444444444333
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.96 E-value=0.13 Score=64.82 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhccccccccc
Q psy11659 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSE 443 (684)
Q Consensus 364 k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~ 443 (684)
...+..+...+.+...++..++.++..++.++..+...++.+..+...++..+..+...+.-+ |. +
T Consensus 368 eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~---------~~-~---- 433 (1486)
T PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC---------GL-P---- 433 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CC-C----
Confidence 333444444444444455555566666666666666666666666666666666665432111 11 1
Q ss_pred ccCChHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHH
Q psy11659 444 DSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENR 499 (684)
Q Consensus 444 e~~~~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~ 499 (684)
.++..+|...+.........+. .++..++..+.++......++....
T Consensus 434 -~~SdEeLe~~LenF~aklee~e--------~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 434 -DLTADNAEDWLEEFQAKEQEAT--------EELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222556666655555444444 4445555555555555544444443
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.92 E-value=0.019 Score=66.14 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 194 QRCMELDMQVSMLQEEKSCLVEEKRRLE 221 (684)
Q Consensus 194 ~~~~el~~q~~~L~~e~~~l~~E~~~l~ 221 (684)
.++.+++.++..+..+...+..++..+.
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~ 201 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYN 201 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444444444433
No 49
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.88 E-value=0.092 Score=60.21 Aligned_cols=164 Identities=14% Similarity=0.275 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKL--D-DVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKV 525 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~L--e-~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~ 525 (684)
+.+...+..+...|+.|. .++..+.... . ........+..+...+......+...+++.... .+.+..
T Consensus 309 ~~l~~~l~~~~~~~~~l~--------~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~-yS~i~~ 379 (560)
T PF06160_consen 309 KELYEYLEHAKEQNKELK--------EELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVP-YSEIQE 379 (560)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-HHHHHH
Confidence 556677777777777776 4544444322 1 222333455555555555555555555554322 223333
Q ss_pred hHHHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHhhchhh
Q psy11659 526 KIFELQNEIKN-------LKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDY-----EEKNRKYIEKANSAFKLLDPT 593 (684)
Q Consensus 526 kl~e~~~ele~-------~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~-----e~r~k~~~e~ak~~i~~l~~~ 593 (684)
.+.+....+.. ....+..|...-...+.++..+...+..+.+-+... -+.|..++..+.+.|..+...
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~ 459 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDE 459 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 333333333222222334444444444444433211 013556666666666655554
Q ss_pred hhchhhHHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659 594 VQNVAALNELKNLRKKNDDKDKMLDDLEKT 623 (684)
Q Consensus 594 ~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~ 623 (684)
... .+-.+..+..++......+..|...
T Consensus 460 L~~--~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 460 LNQ--VPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred Hhc--CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2223445555555555555555444
No 50
>KOG4673|consensus
Probab=97.86 E-value=0.083 Score=58.91 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQ 267 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~l 267 (684)
-++++.||+..+++.+..+..+++.+..|...+++.+... -++..|.+..+.+..+...-+.+..+.-..
T Consensus 403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~----------l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q 472 (961)
T KOG4673|consen 403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA----------LLKDELAEKDEIINQLMAEGEKLSKKQLAQ 472 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4678899999999999999999999999999887765421 122344444444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 268 SKQMEDLELKLNSLEE----TAGEARYLKDEVDILRETA-----------EKVEKYEGIIETYKKKAEELVDLKKQVKQL 332 (684)
Q Consensus 268 e~el~~l~~k~~~L~~----~a~~~~~L~deld~lr~~~-----------~~~~k~e~~le~~k~kleel~~l~~~~~~L 332 (684)
...|.+|+.+..+-.. .-..+..|..+...++.-. +-+.++..++.+.++. +...+..+..|
T Consensus 473 s~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~---~~~sr~~~~~l 549 (961)
T KOG4673|consen 473 SAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDY---YSNSRALAAAL 549 (961)
T ss_pred HHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHH
Confidence 4444444444332221 1123444444444443321 2233444444443333 34445667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH
Q psy11659 333 ESKNLSYIQQTLDLEEELKKNGNW-----KSQVDMYKKQMSELYNQFNE 376 (684)
Q Consensus 333 e~~~~~l~~~~~~LEeel~~~~~~-----r~~le~~k~qi~~l~~~l~e 376 (684)
+.++...+.....+..++.+.+.+ +.+-..|-.++.+|...+.-
T Consensus 550 e~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 550 EAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666655555555444332 33444455555555544443
No 51
>KOG0999|consensus
Probab=97.85 E-value=0.071 Score=58.00 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 336 NLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKET 415 (684)
Q Consensus 336 ~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~ 415 (684)
-..|..++..|+.+++.. +..+...+.+...+....++...-...++.+..+|+..+.+..-.-.|+..+..+|++.
T Consensus 102 E~~yl~kI~eleneLKq~---r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 102 EEYYLQKILELENELKQL---RQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446788899999988888 77777777777777777777766666777777778888877776666777777777666
Q ss_pred HHHHHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHHHHHHHHhhhhcc
Q psy11659 416 NEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK 470 (684)
Q Consensus 416 ~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~~ 470 (684)
+=.|.. +... |-+ + .+.+.-++..+.||+.|...|..+.+
T Consensus 179 NIsLQK-qVs~-----LR~----s-----QVEyEglkheikRleEe~elln~q~e 218 (772)
T KOG0999|consen 179 NISLQK-QVSN-----LRQ----S-----QVEYEGLKHEIKRLEEETELLNSQLE 218 (772)
T ss_pred cchHHH-HHHH-----Hhh----h-----hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555532 1111 110 0 01134466677777777666664333
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.85 E-value=0.2 Score=62.92 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659 600 LNELKNLRKKNDDKDKMLDDLEKT 623 (684)
Q Consensus 600 ~~ei~~Lr~ql~e~e~~i~~LE~~ 623 (684)
...|..|+.++...++.|...+..
T Consensus 770 ~~~I~~l~~~i~~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 770 PERIQQLKQEIEQLEKELKRIEER 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666544443
No 53
>KOG0933|consensus
Probab=97.82 E-value=0.13 Score=60.05 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 301 TAEKVEKYEGIIETYKKKAE-ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETK 379 (684)
Q Consensus 301 ~~~~~~k~e~~le~~k~kle-el~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~ 379 (684)
..+++..+++.+..++.--+ .+.++.+.++...... .+....++.....+..+..+++.+.+.+...+..+.....
T Consensus 767 ~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~---e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~ 843 (1174)
T KOG0933|consen 767 CEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA---EESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEK 843 (1174)
T ss_pred HHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544432222 3333333333333332 2333344444444445566677677777777766666666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 380 RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414 (684)
Q Consensus 380 ~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e 414 (684)
.+..+..++..+..++...+.+......++.....
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~ 878 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKA 878 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 66666666666666666666665555544444333
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.78 E-value=0.026 Score=65.61 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~ 516 (684)
+.|...|.-++..|..|.....+.+.-++ +|=+-|.++++.++-++.....-..+|.+|+..|+++-
T Consensus 590 e~L~~aL~amqdk~~~LE~sLsaEtriKl-dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 590 EVLMSALSAMQDKNQHLENSLSAETRIKL-DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888766666665554 56777899999999999999999999999999999984
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.77 E-value=0.27 Score=62.06 Aligned_cols=103 Identities=12% Similarity=0.175 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHH
Q psy11659 527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNL 606 (684)
Q Consensus 527 l~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~L 606 (684)
+..+...+.+++++....- + ....+..+...+-..++++.....++..........|+.+.....+ ....+..+
T Consensus 605 W~~a~~al~~L~eq~g~~~---~-~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g--~~~~l~~~ 678 (1486)
T PRK04863 605 WLAAQDALARLREQSGEEF---E-DSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGS--EDPRLNAL 678 (1486)
T ss_pred HHhhHHHHHHHHHhcchhh---c-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--ccHHHHHH
Confidence 4455555555555444311 1 1244555555555566666655556666666666666665554443 33344444
Q ss_pred HHhHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy11659 607 RKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYN 640 (684)
Q Consensus 607 r~ql~e~e~~i~~LE~~~~~~~~E~~l~~~a~y~ 640 (684)
...+. +-+ +-.-+.-..-+....++|||.
T Consensus 679 ~~~~~---Gvl--vsel~~~v~~~~~~~~~A~lg 707 (1486)
T PRK04863 679 AERFG---GVL--LSEIYDDVSLEDAPYFSALYG 707 (1486)
T ss_pred HHhcC---Cee--hhHhhhccCcchHHHHHHHHH
Confidence 43222 111 212222224566666888885
No 56
>KOG0946|consensus
Probab=97.68 E-value=0.1 Score=59.42 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhc-CCC
Q psy11659 115 LARLMQLILGCAIN-CNR 131 (684)
Q Consensus 115 l~~ll~lvl~~av~-~~~ 131 (684)
+.-|+.++||.+.. |++
T Consensus 545 iqgl~A~lLgl~~~fn~~ 562 (970)
T KOG0946|consen 545 IQGLCAFLLGLCYYFNDN 562 (970)
T ss_pred HHHHHHHHHHHHHHcCcc
Confidence 67788899998886 543
No 57
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.66 E-value=1e-05 Score=95.31 Aligned_cols=43 Identities=12% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHh
Q psy11659 582 KANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLE 625 (684)
Q Consensus 582 ~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~ 625 (684)
+.+..|.++.+.... .+...+..|...|..++..+..++..|+
T Consensus 558 ~~~~~le~l~~~~~~-~~~~ki~~Le~~L~~k~~e~~~~eer~k 600 (713)
T PF05622_consen 558 KKREQLEELEQELNQ-SLSQKIEELEEALQKKEEEMRAMEERYK 600 (713)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhHHHHHhHHHHHH
Confidence 344455555554332 2355677777777777777766665443
No 58
>KOG0994|consensus
Probab=97.61 E-value=0.28 Score=57.87 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 346 LEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK 413 (684)
Q Consensus 346 LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~ 413 (684)
+++......+.+...+.++.+...|-..-.+.-..++.|+.++..-...|.....++..|..+..+..
T Consensus 1677 ~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1677 LEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 33333444444555666665555554444444444555555555555555555555555554444433
No 59
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.59 E-value=0.00063 Score=80.43 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHhhHHHHHH
Q psy11659 600 LNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEK 632 (684)
Q Consensus 600 ~~ei~~Lr~ql~e~e~~i~~LE~~~~~~~~E~~ 632 (684)
..++.+|+.++...++++..|..-+...=.|.+
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr 637 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFR 637 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999999999999998887755555
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.59 E-value=0.18 Score=58.17 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIV 407 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~ 407 (684)
.+..++.+...+...+..++........+...+..++..+......+.+...+...++.++..|......+..++..+..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 44444444444444444444433333333444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q psy11659 408 ERDSLKETNEEL 419 (684)
Q Consensus 408 e~~~L~e~~~eL 419 (684)
+++.+...+.++
T Consensus 387 ~l~~~~~~~~~~ 398 (562)
T PHA02562 387 ELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 61
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.59 E-value=0.23 Score=56.40 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHhhhh
Q psy11659 600 LNELKNLRKKNDDKDK 615 (684)
Q Consensus 600 ~~ei~~Lr~ql~e~e~ 615 (684)
..+...|..+..+.+.
T Consensus 462 ~eEy~~L~~ka~e~ee 477 (522)
T PF05701_consen 462 LEEYESLSKKAEEAEE 477 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666777666666553
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.57 E-value=0.26 Score=56.61 Aligned_cols=102 Identities=14% Similarity=0.228 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhh
Q psy11659 537 LKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKM 616 (684)
Q Consensus 537 ~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~ 616 (684)
+...++.|+..|.+....+.+|.....+.+--.- ++.+.-+.+.+-| +|-..++ ..++.+..+++.-
T Consensus 412 Lq~amekLq~~f~~~~~e~adl~e~~e~le~~~~----ql~~et~ti~eyi-~ly~~qr--------~~~k~r~~e~~~~ 478 (617)
T PF15070_consen 412 LQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFI----QLSGETDTIGEYI-TLYQSQR--------AVLKQRHQEKEEY 478 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HhccCccchhhhh-ccccccc--------cccchhHHHHHHH
Confidence 3345556666666666666666665555544432 2223333333333 2333333 3556666677666
Q ss_pred HHHHHHHHhhH--------HHHHHHHH--HHHHHHHHHHHHHhHh
Q psy11659 617 LDDLEKTLEKK--------EQQEKLIA--TAFYNLALQKQRQTAD 651 (684)
Q Consensus 617 i~~LE~~~~~~--------~~E~~l~~--~a~y~~~~~~~~~~~~ 651 (684)
|..|..+.+.. +.=..|+. ..||...+....+..+
T Consensus 479 i~~l~~~~e~mk~kl~elq~lv~~l~~~~~e~~~k~l~aaq~~~~ 523 (617)
T PF15070_consen 479 ISRLAQDREEMKVKLLELQELVLRLVGDHNEWHSKFLAAAQNPAD 523 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhcCCCC
Confidence 66666655443 11122322 2566666555544433
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.56 E-value=0.11 Score=60.47 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--cccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy11659 197 MELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEP--TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDL 274 (684)
Q Consensus 197 ~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~--~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l 274 (684)
..|+..+..|..+.....+-=.+|+.++..+.++. ....+..++.+.++++..+..+..++..-+..+..+|+.+.+.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666555555556666655544321 2234667777778888877777777766677777777776666
Q ss_pred HHHHHHHH
Q psy11659 275 ELKLNSLE 282 (684)
Q Consensus 275 ~~k~~~L~ 282 (684)
+..-..+.
T Consensus 501 ~~~R~~lE 508 (697)
T PF09726_consen 501 RRQRASLE 508 (697)
T ss_pred HHHHHHHH
Confidence 55554444
No 64
>KOG0964|consensus
Probab=97.53 E-value=0.33 Score=56.59 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 373 QFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 373 ~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
.+.....++...+.++....-+..++..+-.++...+..|+.+...|-
T Consensus 329 ~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 329 VLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555666666666666666666666666666666664
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.52 E-value=0.0011 Score=78.56 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=65.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------h---------hh-hHhH-HHHhHHHHHHHHHHHHHH
Q psy11659 481 NAKLDDVTQQVKMKTLENRKANQRILELEAELKER---------V---------TE-DAAG-MKVKIFELQNEIKNLKEQ 540 (684)
Q Consensus 481 ~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l---------~---------~~-~~~~-lk~kl~e~~~ele~~r~~ 540 (684)
...+......+..|+.++..+..++..|..+|+.. + +. .... -+..+.....|.+.++..
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888888888888888888888872 0 11 0111 134556677777777777
Q ss_pred HHHHHHhh------------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 541 INHQQEEH------------LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAF 587 (684)
Q Consensus 541 l~~le~q~------------~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i 587 (684)
+..++.-. ......+.+|+..+...+.-+.-+.+-|.....+-++++
T Consensus 582 l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av 640 (722)
T PF05557_consen 582 LRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAV 640 (722)
T ss_dssp HHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75554221 112356788888888887777655555555444444444
No 66
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.51 E-value=0.15 Score=52.26 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 360 le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~ 417 (684)
+..+..++++.+..+...-.+++.+-.+...+...+-.+....+.+..++..++..+.
T Consensus 181 i~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 181 IQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333
No 67
>PRK11637 AmiB activator; Provisional
Probab=97.50 E-value=0.19 Score=55.84 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 194 QRCMELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 194 ~~~~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
+.+..++..+..++.+...+..++..+
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l 80 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQ 80 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333334343333
No 68
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=97.48 E-value=0.0011 Score=58.18 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCC----CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 13 NILLKWLQTFTL----VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 13 ~~l~~W~~tf~~----~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
..|+.|||..-. ..++.++ +||.||++|..+++.+.|..++... ++...+ ++.-...|+..+++ +.
T Consensus 2 ~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~---~~~~~~--~~~~~~~Ni~~~l~----~~ 72 (108)
T PF00307_consen 2 KELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKK---INPNLK--SPFDKLENIELALE----AA 72 (108)
T ss_dssp HHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGG---SSTSSS--SHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhh---ccccch--hhhHHHHHHHHHHH----HH
Confidence 579999998632 4567787 9999999999999999999886532 311111 34556677777776 44
Q ss_pred HHhhcccccCccccchhHHhhcCCHHHHHHHHHHH
Q psy11659 88 QEYFDQALGEFGKVDVHKIVENIDAKELARLMQLI 122 (684)
Q Consensus 88 ~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lv 122 (684)
.+.+|.+.. .++.-|...+|...+..++..+
T Consensus 73 ~~~lg~~~~----~~~~dl~~~~~~~~vl~~l~~l 103 (108)
T PF00307_consen 73 EKKLGIPPL----LSPEDLVEKGDEKSVLSFLWQL 103 (108)
T ss_dssp HHHTTSSCT----S-HHHHHSTT-HHHHHHHHHHH
T ss_pred HHHcCCCCC----CCHHHHHHCcCHHHHHHHHHHH
Confidence 444676432 1555666556766665555444
No 69
>KOG4673|consensus
Probab=97.47 E-value=0.29 Score=54.75 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHH----HHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy11659 448 ITELRQKLVRLTHEN----NMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRK----ANQRILELEAELKER 515 (684)
Q Consensus 448 ~~el~~~l~~Le~En----k~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~----l~~~i~eLq~qle~l 515 (684)
..+|+..|.+-++.. .++| .+|.+|+..|+.+.++..+|-.+... +-++|..||..+...
T Consensus 589 v~dLR~~L~~~Eq~aarrEd~~R--------~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~ 656 (961)
T KOG4673|consen 589 VEDLRQTLSKKEQQAARREDMFR--------GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKA 656 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhh
Confidence 467777776655432 3444 67777888888888777777665532 456666666655443
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.42 E-value=0.13 Score=49.23 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 269 KQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGII-ETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDL 346 (684)
Q Consensus 269 ~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~l-e~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~L 346 (684)
.++..++.++..++.....++.+.+++..++..+..+..-...+ ...+.--.+...+...+..|++.+..+......+
T Consensus 43 ~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l 121 (193)
T PF14662_consen 43 EEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGL 121 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 33444444444555555666777777777766554443222221 1112111233344444455555444444333333
No 71
>PRK11637 AmiB activator; Provisional
Probab=97.32 E-value=0.35 Score=53.72 Aligned_cols=16 Identities=13% Similarity=-0.105 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11659 203 VSMLQEEKSCLVEEKR 218 (684)
Q Consensus 203 ~~~L~~e~~~l~~E~~ 218 (684)
+..+..+...+..++.
T Consensus 70 ~~~~~~~l~~l~~qi~ 85 (428)
T PRK11637 70 RASLLAQLKKQEEAIS 85 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.32 E-value=0.07 Score=49.52 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11659 338 SYIQQTLDLEEELKKN 353 (684)
Q Consensus 338 ~l~~~~~~LEeel~~~ 353 (684)
.+..++..||+++...
T Consensus 77 ~l~rriq~LEeele~a 92 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3344444444444444
No 73
>KOG0612|consensus
Probab=97.32 E-value=0.69 Score=55.48 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.7
Q ss_pred CCcCChhHhhhhc
Q psy11659 49 PEWFSEMWLAKIK 61 (684)
Q Consensus 49 p~~f~~~~l~~i~ 61 (684)
|+|.++.+|..+.
T Consensus 240 PDYISPEvLqs~~ 252 (1317)
T KOG0612|consen 240 PDYISPEVLQSQG 252 (1317)
T ss_pred CCccCHHHHHhhc
Confidence 5555555554443
No 74
>KOG0996|consensus
Probab=97.30 E-value=0.69 Score=55.22 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=31.1
Q ss_pred chhhhhhcHHHHHHHHHHHHHHhhcc-cccCccccchhHH-hhcCC-HHHHHHHHHHHHHHHh
Q psy11659 68 NWRLKISNLKKINEGIVDYFQEYFDQ-ALGEFGKVDVHKI-VENID-AKELARLMQLILGCAI 127 (684)
Q Consensus 68 nw~l~~~Nl~~i~~~i~~y~~~~l~~-~~~~~~~pd~~~i-a~~~d-~~el~~ll~lvl~~av 127 (684)
..||-+.|+ ++.+..+|. |. .+.+|+ |.+..| |.+++ -..+..-+.+|+||=.
T Consensus 81 ~~RL~I~~i--~~~NFKSYa----G~~ilGPFH-ksFtaIvGPNGSGKSNVIDsmLFVFGfRA 136 (1293)
T KOG0996|consen 81 GPRLMITEI--VVENFKSYA----GKQILGPFH-KSFTAIVGPNGSGKSNVIDSMLFVFGFRA 136 (1293)
T ss_pred CCeeeehhh--hhhhhhhhc----CceeecCCC-CCceeeECCCCCCchHHHHHHHHHhhhhH
Confidence 347776665 455556665 33 233454 666655 44443 3567777888888754
No 75
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.03 E-value=0.93 Score=51.59 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy11659 449 TELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr 466 (684)
.++...|..+..|....+
T Consensus 368 ~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 368 SELPKALQQLSSEAEEAK 385 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666665554
No 76
>KOG0994|consensus
Probab=97.02 E-value=1.2 Score=52.83 Aligned_cols=93 Identities=22% Similarity=0.311 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCc-----cccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 205 MLQEEKSCLVEEKRRLEERFQENFVEP-----TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLN 279 (684)
Q Consensus 205 ~L~~e~~~l~~E~~~l~~~~~~~~~~~-----~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~ 279 (684)
.+..+..++...+...+.-++....+. .+.....|+.++....+.|...|..+.+......-..+++..|+....
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFN 1277 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHH
Confidence 344455555555555555554322221 234566777888888887777777766666665555567777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11659 280 SLEETAGEARYLKDEVDILRE 300 (684)
Q Consensus 280 ~L~~~a~~~~~L~deld~lr~ 300 (684)
.|. .-+++|++.++.+++
T Consensus 1278 ~l~---~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1278 GLL---TTYKELREQLEKIKE 1295 (1758)
T ss_pred HHH---HHHHHHHHHHHHhhc
Confidence 555 445666666666554
No 77
>KOG0964|consensus
Probab=96.97 E-value=1.2 Score=52.09 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL 405 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l 405 (684)
...+..++.......+++..++..+... +.+++.+-..+.++.+.++++..+...+=.+=+.++..++.+..++.+.
T Consensus 417 q~e~~~~e~~l~~~~e~i~~l~~si~e~---~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 417 QKEIEDLESELKEKLEEIKELESSINET---KGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555544 7777777777777777777777766666666677777777777766654
Q ss_pred HHH
Q psy11659 406 IVE 408 (684)
Q Consensus 406 ~~e 408 (684)
...
T Consensus 494 ~~~ 496 (1200)
T KOG0964|consen 494 EKN 496 (1200)
T ss_pred HHH
Confidence 443
No 78
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.97 E-value=0.18 Score=46.76 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 358 SQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 358 ~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
...+.+.+.|+-|+..+.....++......+.....+.+.+++.+..+..+++.+..+++++.
T Consensus 73 ~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444455555555555444444444444444444555555555555555555555555553
No 79
>KOG0995|consensus
Probab=96.91 E-value=1 Score=50.10 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300 (684)
Q Consensus 238 ~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~ 300 (684)
.|+.....++..+.+..+....+..+...+.+.+..++.++. ....++..++.+.+.|+.
T Consensus 263 slre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie---~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 263 SLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIE---EKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443332 222444445555555544
No 80
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.87 E-value=1.4 Score=51.19 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 451 LRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEA 510 (684)
Q Consensus 451 l~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~ 510 (684)
|+.+|..+++|+..|. ..+.+.+.+|+.+.............+...+..+..
T Consensus 270 L~qQL~qve~EK~~L~--------~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 270 LKQQLLQVEREKSSLL--------SNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466677777777776 666777777777766666665555555555555444
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.82 E-value=0.46 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
+.+...|+.....++.....+++++.
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.77 E-value=1.6 Score=50.36 Aligned_cols=25 Identities=4% Similarity=-0.011 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 491 VKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 491 ~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
+..|+.-+..+-.+..+|..+++.+
T Consensus 416 mekLq~~f~~~~~e~adl~e~~e~l 440 (617)
T PF15070_consen 416 MEKLQSRFMDLMEEKADLKERVEKL 440 (617)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444444444
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.73 E-value=0.66 Score=45.38 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 195 RCMELDMQVSMLQEEKSCLVEEKRRLE 221 (684)
Q Consensus 195 ~~~el~~q~~~L~~e~~~l~~E~~~l~ 221 (684)
++.+|.-++.++......+..||..|+
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777787775
No 84
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.73 E-value=0.98 Score=47.29 Aligned_cols=191 Identities=23% Similarity=0.231 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C-CccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11659 199 LDMQVSMLQEEKSCLVEEKRRLEERFQENF-V-EPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLEL 276 (684)
Q Consensus 199 l~~q~~~L~~e~~~l~~E~~~l~~~~~~~~-~-~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~ 276 (684)
...+++.|+.....+......+.-.....+ . .+....-..|..-+.+.++....+.....+++.++.++..++.-++.
T Consensus 28 yKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 28 YKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 334455556666666655555432222111 1 11122334455555555565555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy11659 277 KLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNW 356 (684)
Q Consensus 277 k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~ 356 (684)
++...... ...+. .++.. .+-..+-.+++.+..++..+...+..+-++...+
T Consensus 108 ~la~~r~~-------~~~~~-~~~~~-----------------~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl--- 159 (319)
T PF09789_consen 108 KLARQRVG-------DEGIG-ARHFP-----------------HEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL--- 159 (319)
T ss_pred HHHhhhhh-------hcccc-ccccc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44322211 01110 01100 1122333444445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETK-------RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~-------~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~ 417 (684)
..+-+.|+..+..|..+++-.-. -++.+=-|++.|++++..++.|++-+..-+..++..++
T Consensus 160 ~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 160 VTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888777766542 27888899999999999999999988888888877655
No 85
>KOG0250|consensus
Probab=96.67 E-value=2.3 Score=50.86 Aligned_cols=38 Identities=29% Similarity=0.349 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy11659 555 IEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP 592 (684)
Q Consensus 555 ~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~ 592 (684)
..+++..+.....+.+..+..|...-.+++..+..+++
T Consensus 757 ~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~ 794 (1074)
T KOG0250|consen 757 LEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDA 794 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444444444444444444444444444444444
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.67 E-value=1 Score=46.76 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHHHHHHhh
Q psy11659 447 PITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 447 ~~~el~~~l~~Le~Enk~Lr 466 (684)
.+..|+.++..|+.||..||
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR 180 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLR 180 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999
No 87
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.64 E-value=1.9 Score=49.52 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhchh
Q psy11659 576 NRKYIEKANSAFKLLDP 592 (684)
Q Consensus 576 ~k~~~e~ak~~i~~l~~ 592 (684)
|.++++.|..+++..+|
T Consensus 532 Y~~ALe~i~~alE~veP 548 (560)
T PF06160_consen 532 YEKALETIATALEKVEP 548 (560)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 55566666666666666
No 88
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.60 E-value=0.73 Score=44.20 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy11659 199 LDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDL 274 (684)
Q Consensus 199 l~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l 274 (684)
+...+....+....|..++..++..+...- .+...+..+..++++++..+..+|.....+-.++..++++...|
T Consensus 27 L~~~ve~~ee~na~L~~e~~~L~~q~~s~Q--qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L 100 (193)
T PF14662_consen 27 LQRSVETAEEGNAQLAEEITDLRKQLKSLQ--QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSL 100 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555554444332110 01112333444444444444444444444444443333333333
No 89
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.59 E-value=1.1 Score=45.96 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcc
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLG 436 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~ 436 (684)
-..+..++....-|..+++....+...|+.+....+..+..-.--++....++..-+-.+.+++..- + ....-++...
T Consensus 136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~-q-ne~~kv~k~~ 213 (305)
T PF14915_consen 136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMY-Q-NEQDKVNKYI 213 (305)
T ss_pred cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hHHHHHHHHH
Confidence 3345556666667777888888888888888777777665555445555444444444444443210 0 0000011100
Q ss_pred cccccccccCChHHHHHHHHHHHHHHHHhh
Q psy11659 437 ENLDLSEDSVPITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 437 ~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr 466 (684)
+ . . .-+.++|..|+.||-.|+
T Consensus 214 -----~-K--q-es~eERL~QlqsEN~LLr 234 (305)
T PF14915_consen 214 -----G-K--Q-ESLEERLSQLQSENMLLR 234 (305)
T ss_pred -----H-H--H-HHHHHHHHHHHHHHHHHH
Confidence 0 0 1 446789999999998887
No 90
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.57 E-value=1.2 Score=46.55 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=59.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHH
Q psy11659 379 KRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRL 458 (684)
Q Consensus 379 ~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~L 458 (684)
..++++...+..|+..+..+..+++.+..+++.++.+..-|..+ |+..-+++ ...++ .|..|
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E---------Ln~~L~g~--~~riv-------DIDaL 194 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE---------LNYILNGD--ENRIV-------DIDAL 194 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCC--CCCcc-------cHHHH
Confidence 34445566667777777888888888888888888887776532 22110001 11122 35567
Q ss_pred HHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHH
Q psy11659 459 THENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLE 497 (684)
Q Consensus 459 e~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~ 497 (684)
=.||+.|+ +++..++.+.+-+...+..+-..
T Consensus 195 i~ENRyL~--------erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 195 IMENRYLK--------ERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999998 88888887777776666555443
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.53 E-value=2.2 Score=48.96 Aligned_cols=89 Identities=19% Similarity=0.292 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy11659 313 ETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQ 392 (684)
Q Consensus 313 e~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~ 392 (684)
...++++.++..++.+++.+........+....|..++...... ..-..|.+.|-+.-..+..-...+.+.-.+.+.++
T Consensus 440 ~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQ 518 (594)
T PF05667_consen 440 SESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQ 518 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777888888888777777777788877777554 33444666666555444444444444444444444
Q ss_pred HHHHHHHHHH
Q psy11659 393 EKVTSLQREK 402 (684)
Q Consensus 393 ~~l~~le~e~ 402 (684)
.++..+...+
T Consensus 519 keiN~l~gkL 528 (594)
T PF05667_consen 519 KEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 92
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.43 E-value=1.6 Score=46.11 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccC--ChHHHHHHHHHHHHHHHHhhhhccc
Q psy11659 394 KVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSV--PITELRQKLVRLTHENNMLQMNQKD 471 (684)
Q Consensus 394 ~l~~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~~~~~~e~~--~~~el~~~l~~Le~Enk~Lr~~~~~ 471 (684)
.+..+...-..|..++..+-....++...-..++. - +..+ .|..+...+.+|+.||..++...+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe----------~---F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNE----------V---FETFKKEMEKMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555666666666655422111111 0 0011 1466677888888888888744443
No 93
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=96.31 E-value=0.0059 Score=57.62 Aligned_cols=59 Identities=29% Similarity=0.486 Sum_probs=37.1
Q ss_pred HHHHHhhcCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHH
Q psy11659 15 LLKWLQTFTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKI 79 (684)
Q Consensus 15 l~~W~~tf~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i 79 (684)
|..||++++++.|..++ -|++||+.+++||+...|...+-.. -+++. .-..|+.|...+
T Consensus 1 l~~WL~~l~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~-----y~~~~-s~~~Kl~NW~~L 60 (158)
T PF06294_consen 1 LLKWLQSLDLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHN-----YSNGN-SVAQKLNNWETL 60 (158)
T ss_dssp HHHHHHHS--S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS---------S-SHHHHHHHHHHH
T ss_pred ChHHHhcCCCCCCCCchHHHcccccHHHHHHHHHCCCCccccc-----cCCCC-CHHHHHHHHHHH
Confidence 67899999988888777 5999999999999999998744211 02233 456777777665
No 94
>KOG0999|consensus
Probab=96.28 E-value=2.4 Score=46.67 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE 403 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e 403 (684)
....+|++.|-.++..+..|......+..++..+..+...+.-+..++.+...-..- .-+++.+.+..++.+++
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~I---AekQlEEALeTlq~ERe 243 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEI---AEKQLEEALETLQQERE 243 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Confidence 445667777777777777776666666666777777777776666666665432221 22346666666666554
No 95
>KOG1029|consensus
Probab=96.24 E-value=3.1 Score=47.62 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 386 FENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 386 ~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
..+-.+..+...++.+++.|...+..|..++.+.+|
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~ 465 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV 465 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 344445555555665555555555555555555544
No 96
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.23 E-value=1.9 Score=44.84 Aligned_cols=123 Identities=21% Similarity=0.354 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy11659 283 ETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEE-LVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD 361 (684)
Q Consensus 283 ~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~klee-l~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le 361 (684)
.+.++++.|+++-..||..+..+..-.. .|-.+-.. +.++.+++...... +..|.+++... ...+.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~---~~EekEqqLv~dcv~QL~~An~q-------ia~LseELa~k---~Ee~~ 230 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETD---TYEEKEQQLVLDCVKQLSEANQQ-------IASLSEELARK---TEENR 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHh---hccHHHHHHHHHHHHHhhhcchh-------HHHHHHHHHHH---HHHHH
Confidence 3445666666666666664444432222 22222111 23333333333222 33333333333 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 362 MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418 (684)
Q Consensus 362 ~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~e 418 (684)
.+..+|..|..++.....++..+-.++..|...+......-..|..++..++.+..+
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555556666666666666555555555555555555443
No 97
>PLN02939 transferase, transferring glycosyl groups
Probab=96.20 E-value=1.6 Score=52.37 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 178 LVAELQTVIDARDQMAQRCMELDMQVSM 205 (684)
Q Consensus 178 ~~~~l~~~~~e~d~l~~~~~el~~q~~~ 205 (684)
..+++..++.|++.|..++.-|+..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 154 ALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 4567888888999988888888877665
No 98
>KOG4593|consensus
Probab=96.17 E-value=3.3 Score=47.17 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 491 VKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 491 ~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
+..+....+.+..+...+-.++.++
T Consensus 386 lk~l~etl~~~~~~~~~~~tq~~Dl 410 (716)
T KOG4593|consen 386 LKELHETLARRLQKRALLLTQERDL 410 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333333333333333
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.12 E-value=1 Score=41.36 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 451 LRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516 (684)
Q Consensus 451 l~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~ 516 (684)
+-..+.+.++++..|. .++..|.+.|+........+..+.......+..|+.++..+.
T Consensus 8 v~~kLK~~~~e~dsle--------~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt 65 (140)
T PF10473_consen 8 VEEKLKESESEKDSLE--------DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT 65 (140)
T ss_pred HHHHHHHHHHhHhhHH--------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666766 666667777776666666666666666666666666666553
No 100
>KOG0978|consensus
Probab=96.08 E-value=3.9 Score=47.23 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=11.9
Q ss_pred hcCCCchhhhHHhHcCCHHHHHHHHHHHH
Q psy11659 127 INCNRKQNYITKIMELEESVQQVIMQSIQ 155 (684)
Q Consensus 127 v~~~~~~~~I~~I~~L~~~~Q~~lm~~Iq 155 (684)
-+|++-.... +++..+.....-.+.+++
T Consensus 181 ~~~~~~~~~l-~~~~~~~~~~~~e~~~~~ 208 (698)
T KOG0978|consen 181 RQLDRFRVEL-RSLKEKVRSETFELRCLQ 208 (698)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHHH
Confidence 3444433333 334334444444455555
No 101
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.03 E-value=2.5 Score=44.58 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 180 AELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 180 ~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
.+++.....++.|..-|.+|+++...+.++......+-..-
T Consensus 64 ~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~k 104 (309)
T PF09728_consen 64 SELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEK 104 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666778888888888887777777655554444433
No 102
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.87 E-value=0.63 Score=41.66 Aligned_cols=92 Identities=20% Similarity=0.324 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 237 SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYK 316 (684)
Q Consensus 237 ~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k 316 (684)
..|.+++..++.++..+...+..+...-..+..++-.+-..++.+......+..|+.++..+.. ++...++-|-
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~------ry~t~LellG 92 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ------RYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhc
Confidence 3344444444443333222222233333334444455555555555555556666666665544 5566677777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11659 317 KKAEELVDLKKQVKQLES 334 (684)
Q Consensus 317 ~kleel~~l~~~~~~Le~ 334 (684)
.|-+++.+|+..+..+..
T Consensus 93 EK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKE 110 (120)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 776666666655555443
No 103
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.84 E-value=8.5 Score=49.13 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 193 AQRCMELDMQVSMLQEEKSCLVEEKRRLEE 222 (684)
Q Consensus 193 ~~~~~el~~q~~~L~~e~~~l~~E~~~l~~ 222 (684)
..+|.++..++..+..+...+......+..
T Consensus 748 ~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 748 DARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444334333333333
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.83 E-value=1.5 Score=40.36 Aligned_cols=95 Identities=21% Similarity=0.342 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHhhhH
Q psy11659 178 LVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESAR 257 (684)
Q Consensus 178 ~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e~~~ 257 (684)
....+.+...++|.+..++.-|++.+...++.+..+..+++..+.- +..|+.++..+...+..++..+
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e------------ie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE------------IETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999998888888887777766543 3356777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 258 DDYRIKLEIQSKQMEDLELKLNSLEET 284 (684)
Q Consensus 258 ~~~~~~~~~le~el~~l~~k~~~L~~~ 284 (684)
+.++.....+.+.+...+.++.+|...
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766666643
No 105
>KOG1029|consensus
Probab=95.80 E-value=5 Score=46.10 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
.+..++.+...++....+++.|+.++.|+
T Consensus 470 ~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 470 QKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.78 E-value=2.5 Score=42.52 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q psy11659 323 VDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEE 377 (684)
Q Consensus 323 ~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~ 377 (684)
.+|...+..+..+...+...+..+.+.+... ...++.++..+..++..+.+.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l---~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKL---EKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433 333333334444444433333
No 107
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.73 E-value=5.3 Score=45.96 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCCCCCCccccccHHH---HHHHHHhhCCCcCC
Q psy11659 24 LVAPHQSLADITDGVA---MAQALHQIAPEWFS 53 (684)
Q Consensus 24 ~~~~~~~~~dL~dG~~---l~~vl~~idp~~f~ 53 (684)
++.++.++.+++...+ ...+|..|||+..+
T Consensus 19 ~~~~~~sl~~ft~e~~v~~~~~cL~~I~p~~~~ 51 (594)
T PF05667_consen 19 IPEDVQSLKQFTTELLVEAVVRCLRVIDPSLGS 51 (594)
T ss_pred ccCCcccHhhCCHHHHHHHHHHHHHHhCccccC
Confidence 5677889999988875 56899999998844
No 108
>KOG0980|consensus
Probab=95.69 E-value=6 Score=46.26 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD 410 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~ 410 (684)
...++.++.++.-+..++......+..+.........++.++..+++++-.+..
T Consensus 493 ~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 493 AKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELV 546 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444555555555555555555555555555566666677777777776655443
No 109
>PRK09039 hypothetical protein; Validated
Probab=95.58 E-value=1.5 Score=47.00 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy11659 525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKN 576 (684)
Q Consensus 525 ~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~ 576 (684)
.++.....++...+..+.+..++..-+..++..|+..+..++..+...+.+.
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444555555555555555554444444
No 110
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=95.50 E-value=0.05 Score=47.51 Aligned_cols=93 Identities=18% Similarity=0.288 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCCCC---CCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTFTLVA---PHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf~~~~---~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
...++.|+|.+--.. ++.+ .++|.||++|..+++.+.|..++... + . .. +..-++.|+...++.+..
T Consensus 3 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~---~--~-~~-~~~~~~~Ni~~~l~~~~~-- 73 (107)
T cd00014 3 KEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKK---I--N-PL-SRFKRLENINLALNFAEK-- 73 (107)
T ss_pred HHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCcccccccc---c--c-cc-chhhHHHHHHHHHHHHHH--
Confidence 457999999874222 2333 48999999999999999998875421 1 1 12 344566888888776655
Q ss_pred HHhhcccccCccccchhHHhhcCCHHHHHHHH
Q psy11659 88 QEYFDQALGEFGKVDVHKIVENIDAKELARLM 119 (684)
Q Consensus 88 ~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll 119 (684)
+|.+.. .+.+.-|.+.+|...+..++
T Consensus 74 ---~gi~~~---~~~~~Dl~~~~n~~~vl~~l 99 (107)
T cd00014 74 ---LGVPVV---NFDAEDLVEDGDEKLVLGLL 99 (107)
T ss_pred ---cCCcee---ccCHHHHhhCCCceeeHHHH
Confidence 565422 34455566556655544433
No 111
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.47 E-value=11 Score=48.00 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659 194 QRCMELDMQVSMLQEEKSCLVEEKRRLEERFQEN 227 (684)
Q Consensus 194 ~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~ 227 (684)
.++.+|+..+..|..+...+..++..+..+...+
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRAL 775 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777666666666666666555544
No 112
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.31 E-value=4 Score=41.87 Aligned_cols=47 Identities=13% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE 403 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e 403 (684)
..++..++.+..-|..++.......++++.++.....++.++-.+.+
T Consensus 62 ~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d 108 (305)
T PF14915_consen 62 NGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD 108 (305)
T ss_pred hhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444445555555555555556666666666666655555444
No 113
>KOG0963|consensus
Probab=95.28 E-value=6.7 Score=44.24 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhHHhhhhhHHHHHHHHhh
Q psy11659 599 ALNELKNLRKKNDDKDKMLDDLEKTLEK 626 (684)
Q Consensus 599 ~~~ei~~Lr~ql~e~e~~i~~LE~~~~~ 626 (684)
++.+...||........++..+..-...
T Consensus 388 lq~e~a~Lr~~n~~~~~~~~~~~~~~~e 415 (629)
T KOG0963|consen 388 LQNENASLRVANSGLSGRITELSKKGEE 415 (629)
T ss_pred hhHHHHHHhccccccchhHHHHHhhhhh
Confidence 5677777777777777766555544333
No 114
>PRK09039 hypothetical protein; Validated
Probab=95.27 E-value=5.2 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRA 381 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~ 381 (684)
+.+++.++.++..++..+.....+.
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444444433
No 115
>KOG0980|consensus
Probab=95.22 E-value=8.5 Score=45.06 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHh
Q psy11659 76 LKKINEGIVDYFQEY 90 (684)
Q Consensus 76 l~~i~~~i~~y~~~~ 90 (684)
++.++..+..||.++
T Consensus 228 f~~qf~rLk~FY~~~ 242 (980)
T KOG0980|consen 228 FHTQFERLKQFYADC 242 (980)
T ss_pred HHHHHHHHHHHHHhc
Confidence 345555666666553
No 116
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.21 E-value=4.6 Score=41.95 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 237 SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAG 286 (684)
Q Consensus 237 ~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~ 286 (684)
..++..+..++.+...+....+-++.++..|..++..++...-.+...+.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE 72 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE 72 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444444444466677777777777777776666654433
No 117
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.21 E-value=4.6 Score=41.94 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 260 YRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETA 302 (684)
Q Consensus 260 ~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~ 302 (684)
++..+..|..+...++.++.... ..+..|..++..+|..+
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek---~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEK---ARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33344444444444444333332 44555566666665544
No 118
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.12 E-value=6.1 Score=42.86 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 283 ETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEE----LVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 283 ~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~klee----l~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
+....++.|+.....++. ...++++-+..+|.|.++ +..++..+...++....+......|..++++-
T Consensus 292 k~s~~i~~l~ek~r~l~~---D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq 363 (622)
T COG5185 292 KISQKIKTLREKWRALKS---DSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ 363 (622)
T ss_pred HHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 333334444444444433 223444444444444332 33344455555555555555555555555544
No 119
>KOG0982|consensus
Probab=94.93 E-value=6.5 Score=42.18 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q psy11659 188 ARDQMAQRCMELDMQVSMLQE-------EKSCLVEEKRRLEERFQ 225 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~-------e~~~l~~E~~~l~~~~~ 225 (684)
.+.++..++.-|++.|.+|.. ...++.+|+-.|..+..
T Consensus 216 ~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h 260 (502)
T KOG0982|consen 216 ERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYH 260 (502)
T ss_pred hhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHH
Confidence 455566666666666666654 35566777766655443
No 120
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.84 E-value=8.1 Score=42.85 Aligned_cols=155 Identities=12% Similarity=0.163 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKL---DDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKV 525 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~L---e~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~ 525 (684)
+.+..-+.+++..|..|+ .+++.++... +........++++...+...+..+...++..
T Consensus 312 ~~l~~~l~k~ke~n~~L~--------~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~---------- 373 (570)
T COG4477 312 PILPDYLEKAKENNEHLK--------EEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQ---------- 373 (570)
T ss_pred cchHHHHHHHHHHHHHHH--------HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Confidence 456677888888888887 5655544332 2222333344444443333333333322221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchh-------
Q psy11659 526 KIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA------- 598 (684)
Q Consensus 526 kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~------- 598 (684)
..-|..++..+..++..+.+...+...++..|..+.+|=....+.+..+..+..++-+-++..+-| |
T Consensus 374 -----~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLP-GlPe~~l~ 447 (570)
T COG4477 374 -----EVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLP-GLPETFLS 447 (570)
T ss_pred -----cccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHH
Confidence 112233333444444444444455555566666665555544455544444444444444443333 3
Q ss_pred ----hHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659 599 ----ALNELKNLRKKNDDKDKMLDDLEKTLEKK 627 (684)
Q Consensus 599 ----~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~ 627 (684)
....++++-.+|.++--.+..+-...+.+
T Consensus 448 l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a 480 (570)
T COG4477 448 LFFTAGHEIQDLMKELSEVPINMEAVSALVDIA 480 (570)
T ss_pred HHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 35567777777777665555554444443
No 121
>KOG1899|consensus
Probab=94.77 E-value=2.3 Score=47.52 Aligned_cols=187 Identities=13% Similarity=0.178 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhH
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI 527 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl 527 (684)
++++++++.||+.....|. -++..|..+++..+.++..||.-+..-.. +|
T Consensus 106 ~~~yQerLaRLe~dkesL~--------LQvsvLteqVeaQgEKIrDLE~cie~kr~----------------------kL 155 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQ--------LQVSVLTEQVEAQGEKIRDLETCIEEKRN----------------------KL 155 (861)
T ss_pred chHHHHHHHHHhcchhhhe--------ehHHHHHHHHHHhhhhHHHHHHHHHHHHh----------------------hh
Confidence 5889999999999888887 56666666666555555555443322221 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----chhhhhch-----h
Q psy11659 528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKL----LDPTVQNV-----A 598 (684)
Q Consensus 528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~----l~~~~~~~-----~ 598 (684)
...++-++..--....|+.|.-|+-.++.+|.-.+.++++|-.+.|.+++..-....++-+. ++.++... +
T Consensus 156 natEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klks 235 (861)
T KOG1899|consen 156 NATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKS 235 (861)
T ss_pred chHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 22222233322233556666556666777777777777777777777766655555444321 12211111 1
Q ss_pred hHHHHHHHHHhHHhhhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhHhhhhhcccCCCCCcchhhhhhhhh
Q psy11659 599 ALNELKNLRKKNDDKDKMLDDLEKTLEKK---EQQEKLIATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQAS 674 (684)
Q Consensus 599 ~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~---~~E~~l~~~a~y~~~~~~~~~~~~~r~~~~~~~~~~~sfl~~qr~~~ 674 (684)
...++.-|++|+.+++..+..|-..+-.. +-|.+-.-- .--++++++-+++. ..---|.+-+|+.+
T Consensus 236 tk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd-------~~lk~a~eslm~an---e~kdr~ie~lr~~l 304 (861)
T KOG1899|consen 236 TKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRD-------NTLKNALESLMRAN---EQKDRFIESLRNYL 304 (861)
T ss_pred ccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHH-------HHHHHHHHHHHhhc---hhhhhHHHHHHHHh
Confidence 45678889999998887665554443322 111111000 01234555554332 34556777777766
No 122
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.72 E-value=9.9 Score=43.32 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659 359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVT 396 (684)
Q Consensus 359 ~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~ 396 (684)
.+..++..+..|+.-+.-...+...++..++.+.-.+.
T Consensus 350 ~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLq 387 (786)
T PF05483_consen 350 VVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQ 387 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555556667776666666666666665555544443
No 123
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.65 E-value=11 Score=43.33 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659 199 LDMQVSMLQEEKSCLVEEKRRLEERFQEN 227 (684)
Q Consensus 199 l~~q~~~L~~e~~~l~~E~~~l~~~~~~~ 227 (684)
|...|..|.++++.|..-.+-|..+++++
T Consensus 247 L~~tVq~L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 247 LLETVQHLQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888877777777777654
No 124
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.53 E-value=7.5 Score=41.07 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy11659 366 QMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK----LIVERDSLKETNEELK 420 (684)
Q Consensus 366 qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~----l~~e~~~L~e~~~eL~ 420 (684)
.+.+++.++......+......+..+...+.+++..++. -..+...|+..+.-|+
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555555443322 2234455555555554
No 125
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=94.34 E-value=0.11 Score=44.81 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCCC---CCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659 13 NILLKWLQTFTLV---APHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY 86 (684)
Q Consensus 13 ~~l~~W~~tf~~~---~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y 86 (684)
.+++.|+|..-.. .++.+ .++|.||++|..+++.+.|..++... +. .+. +-.-++.|+...+..+..+
T Consensus 3 ~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~---~~--~~~-~~~~~~~Ni~~~l~~~~~~ 74 (103)
T smart00033 3 KTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKK---VN--ASL-SRFKKIENINLALSFAEKL 74 (103)
T ss_pred HHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhh---cc--ccc-cHHHHHHhHHHHHHHHHHc
Confidence 5799999987422 23333 57999999999999999998876522 11 122 2344567887777755544
No 126
>PF13514 AAA_27: AAA domain
Probab=94.25 E-value=20 Score=44.95 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11659 600 LNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLA 642 (684)
Q Consensus 600 ~~ei~~Lr~ql~e~e~~i~~LE~~~~~~~~E~~l~~~a~y~~~ 642 (684)
..++..++.++......+..+.......+.+..=+-++|-.+.
T Consensus 549 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 591 (1111)
T PF13514_consen 549 AARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALW 591 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666777776654
No 127
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.15 E-value=16 Score=43.31 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11659 540 QINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLL 590 (684)
Q Consensus 540 ~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l 590 (684)
...+|-.++-.+......|...|.++..++......|-+...+...+...+
T Consensus 259 ~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 259 ESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566677777788888888766666666666665555555
No 128
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.02 E-value=6.8 Score=38.64 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=81.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHH
Q psy11659 525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELK 604 (684)
Q Consensus 525 ~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~ 604 (684)
.-..+....|++.+.-+..+..--+.+...+.+....+..-+.-...+..-...-++.|..-|..+..... .++.
T Consensus 90 ~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~-----~e~~ 164 (207)
T PF05010_consen 90 KSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQ-----AELL 164 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHH
Confidence 33446666677777777766654445566666777777776666666666666777777777777776544 4889
Q ss_pred HHHHhHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11659 605 NLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLA 642 (684)
Q Consensus 605 ~Lr~ql~e~e~~i~~LE~~~~~~~~E~~l~~~a~y~~~ 642 (684)
.|+.+|.-.+-++..|+..+++...|+.=++.-+..|-
T Consensus 165 aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 165 ALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998666666666665553
No 129
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.01 E-value=10 Score=40.49 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK----LIVERDSLKETNEELK 420 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~----l~~e~~~L~e~~~eL~ 420 (684)
...++..++.+.+++.++......+..+...+..+...+..+++.++. -..++..|+..+..|+
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555555555555555544332 1233444555554443
No 130
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.89 E-value=15 Score=42.00 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhh
Q psy11659 453 QKLVRLTHENNMLQ 466 (684)
Q Consensus 453 ~~l~~Le~Enk~Lr 466 (684)
..+..|+..+..||
T Consensus 534 kqie~Lee~~~~Lr 547 (786)
T PF05483_consen 534 KQIENLEETNTQLR 547 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777777666
No 131
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.77 E-value=7.3 Score=38.13 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11659 396 TSLQREKEKLIVERDSLKETN 416 (684)
Q Consensus 396 ~~le~e~e~l~~e~~~L~e~~ 416 (684)
..+..+...+..++..|...+
T Consensus 167 ~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344343333
No 132
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.72 E-value=0.69 Score=45.41 Aligned_cols=65 Identities=28% Similarity=0.365 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKV 395 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l 395 (684)
.+..++..+..+..++..++.+++.. ...++.+..++..++-.+.-...+..+++.|+..|-++.
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek---~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEK---NKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444 333444444444444444444444445555555444443
No 133
>KOG1853|consensus
Probab=93.70 E-value=8.2 Score=38.45 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659 368 SELYNQFNEETKRADKSEFENKKLQEKVT 396 (684)
Q Consensus 368 ~~l~~~l~e~~~~~~~le~e~~~L~~~l~ 396 (684)
.++..+++.+..++.-|+.++..-+.-+.
T Consensus 136 eDfeqrLnqAIErnAfLESELdEke~lle 164 (333)
T KOG1853|consen 136 EDFEQRLNQAIERNAFLESELDEKEVLLE 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45555566555555555555443333333
No 134
>KOG0979|consensus
Probab=93.70 E-value=20 Score=42.88 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL 405 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l 405 (684)
+..++.+.+...-....+..|+.+.... .+++......+.+....+.+.-.+....+.+...+...++.+.+.-+..
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et---~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~r 337 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKET---RSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKR 337 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555433333 4444444443433333333333334444444444444544444444444
Q ss_pred HHHHHHHHHHHH
Q psy11659 406 IVERDSLKETNE 417 (684)
Q Consensus 406 ~~e~~~L~e~~~ 417 (684)
...+...++.+.
T Consensus 338 q~~i~~~~k~i~ 349 (1072)
T KOG0979|consen 338 QKRIEKAKKMIL 349 (1072)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 135
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.69 E-value=19 Score=42.65 Aligned_cols=82 Identities=26% Similarity=0.277 Sum_probs=50.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Q psy11659 310 GIIETYKKKAE-ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ-MSELYNQFNEETKRADKSEFE 387 (684)
Q Consensus 310 ~~le~~k~kle-el~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~q-i~~l~~~l~e~~~~~~~le~e 387 (684)
..+...+...+ ++..+..+++..+..|..+.-++..+.+++.-. ..--.|-.+ .....++.-+-.+++.+||.|
T Consensus 123 ~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir----~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 123 AELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIR----NEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343333 455666777777777777777777777666532 222223333 334566677777889999999
Q ss_pred HHHHHHHH
Q psy11659 388 NKKLQEKV 395 (684)
Q Consensus 388 ~~~L~~~l 395 (684)
+++|+.-+
T Consensus 199 C~rLr~l~ 206 (769)
T PF05911_consen 199 CQRLRALV 206 (769)
T ss_pred HHHHHHHH
Confidence 98887655
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.67 E-value=5.5 Score=36.39 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11659 321 ELVDLKKQVKQLESKNLSYIQQ 342 (684)
Q Consensus 321 el~~l~~~~~~Le~~~~~l~~~ 342 (684)
++.++..++..|...|.-+...
T Consensus 106 e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 106 ELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544433
No 137
>KOG0946|consensus
Probab=93.60 E-value=18 Score=42.11 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 237 SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAE 303 (684)
Q Consensus 237 ~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~ 303 (684)
..+......++..+.++..++..++....++..+..+++.++.... .....++++++.++....
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~---s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFI---SEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 3344444455555555555566666666666666666666655443 566777778877776554
No 138
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.44 E-value=8.2 Score=37.68 Aligned_cols=143 Identities=18% Similarity=0.196 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659 317 KKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVT 396 (684)
Q Consensus 317 ~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~ 396 (684)
.|-.+++-|+.++++.......-...+..|..+++.. +..+......+..++..+......+...+.+..+......
T Consensus 7 qk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~---~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~ 83 (202)
T PF06818_consen 7 QKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLREL---RAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAE 83 (202)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHH
Confidence 3444555666666666666665556666666666665 6666666666666666555555555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccc--cccccccCChHHHHHHHHHHHHHHHHhh
Q psy11659 397 SLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGEN--LDLSEDSVPITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 397 ~le~e~e~l~~e~~~L~e~~~eL~~~q~~~~~~~~l~~~~~~--~~~~~e~~~~~el~~~l~~Le~Enk~Lr 466 (684)
-+......+..++..|+.....+......... ++..+.. ....... ....++..+.+|..|....+
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~---l~~~deak~~~~~~~~-~~~~l~~e~erL~aeL~~er 151 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACAGRLKRQCQL---LSESDEAKAQRQAGED-ELGSLRREVERLRAELQRER 151 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhhccchhhhcc---ccccchhHHhhccccc-cchhHHHHHHHHHHHHHHHH
Confidence 44444444444455554444332000000000 1100000 0000001 12668888888888888777
No 139
>KOG4593|consensus
Probab=93.26 E-value=19 Score=41.32 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQT 343 (684)
Q Consensus 266 ~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~ 343 (684)
+++.....++.++.++..+......+..++..+++..+.+.-+..++++|..++..+..++.++-.|+-.|..+..+.
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455555666666777777777777888888878787777788888888888888888888888888877777665443
No 140
>KOG1003|consensus
Probab=92.98 E-value=9.1 Score=36.88 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQRE 401 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e 401 (684)
.++.+|.+....+...+..|...-..+ -...+.|+.++..+..++-+...+..-.+.....|...+++++..
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~~---~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~k 180 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEKL---EQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEK 180 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHh
Confidence 445555555555554444444443333 455666666666666666666555555554444444444444433
No 141
>KOG1853|consensus
Probab=92.92 E-value=11 Score=37.61 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 338 SYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEET 378 (684)
Q Consensus 338 ~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~ 378 (684)
...++++.||.++.....+-..+-.++.+..+|...+.-..
T Consensus 144 qAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 144 QAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555554444444455555555555555544433
No 142
>KOG1003|consensus
Probab=92.81 E-value=9.6 Score=36.72 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q psy11659 340 IQQTLDLEEELKKN 353 (684)
Q Consensus 340 ~~~~~~LEeel~~~ 353 (684)
...+..|+++++-.
T Consensus 108 Es~~~eLeEe~~~~ 121 (205)
T KOG1003|consen 108 ESQSEELEEDLRIL 121 (205)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444555554444
No 143
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.80 E-value=4.8 Score=36.05 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy11659 306 EKYEGIIET 314 (684)
Q Consensus 306 ~k~e~~le~ 314 (684)
..+...+..
T Consensus 99 eEL~~Dv~D 107 (120)
T PF12325_consen 99 EELRADVQD 107 (120)
T ss_pred HHHHHHHHH
Confidence 333333333
No 144
>KOG0982|consensus
Probab=92.72 E-value=17 Score=39.22 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 555 IEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588 (684)
Q Consensus 555 ~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~ 588 (684)
.++|..++...+..- -|++.|+..+--.|-
T Consensus 463 qdeLmqafqeqeeiN----fRL~~yid~iilnii 492 (502)
T KOG0982|consen 463 QDELMQAFQEQEEIN----FRLKFYIDFIILNII 492 (502)
T ss_pred HHHHHHHHHHHHHhh----hHHHHHHhHHHHHHH
Confidence 345555555443221 367777776654443
No 145
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.68 E-value=16 Score=38.85 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhcc
Q psy11659 78 KINEGIVDYFQEYFDQ 93 (684)
Q Consensus 78 ~i~~~i~~y~~~~l~~ 93 (684)
-|+.+|..|.-|.+|.
T Consensus 10 lvLgGVIA~~gD~ig~ 25 (499)
T COG4372 10 LVLGGVIAYAGDTIGK 25 (499)
T ss_pred HHHHhHHHHHhhHHHh
Confidence 3556666666555553
No 146
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.64 E-value=11 Score=37.08 Aligned_cols=81 Identities=26% Similarity=0.313 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 263 KLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQ 342 (684)
Q Consensus 263 ~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~ 342 (684)
+....++.+.++..++..|. .....++.++..|+.......+-...+...+.++.. +..++..|+-....+..+
T Consensus 42 ~e~~~~k~m~ei~~eN~~L~---epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~---~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 42 KEERNEKLMAEISQENKRLS---EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKE---LEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33344445555555554444 445555555555555444444444444444444332 234445555554444444
Q ss_pred HHHHHHH
Q psy11659 343 TLDLEEE 349 (684)
Q Consensus 343 ~~~LEee 349 (684)
...++.+
T Consensus 116 ~~kle~E 122 (201)
T PF13851_consen 116 FEKLEQE 122 (201)
T ss_pred HHHHHHH
Confidence 4444444
No 147
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.98 E-value=31 Score=40.61 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=8.1
Q ss_pred CCCCcchhhhhh
Q psy11659 660 SQQPQSFLTKQR 671 (684)
Q Consensus 660 ~~~~~sfl~~qr 671 (684)
.+.|-++|...|
T Consensus 580 iD~p~~~lD~~~ 591 (650)
T TIGR03185 580 IDTPLGRLDSSH 591 (650)
T ss_pred EcCCccccChHH
Confidence 467778887644
No 148
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=90.90 E-value=31 Score=38.53 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhchh
Q psy11659 575 KNRKYIEKANSAFKLLDP 592 (684)
Q Consensus 575 r~k~~~e~ak~~i~~l~~ 592 (684)
.|+..++.|-.+++..+|
T Consensus 534 dY~~s~eia~qaLE~vEp 551 (570)
T COG4477 534 DYDASFEIASQALEKVEP 551 (570)
T ss_pred chhHHHHHHHHHHhhhCC
Confidence 577888888888888887
No 149
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=90.86 E-value=0.31 Score=40.86 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=43.5
Q ss_pred cCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhcccc
Q psy11659 22 FTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQAL 95 (684)
Q Consensus 22 f~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~~~~ 95 (684)
.....++.++ .||+||++|..++|-..|...+- ..|.-.+.- .-...+.|+..+. +|..+.||...
T Consensus 7 ~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~---~~I~~~~~m-S~~~~l~N~~ll~----~~c~~~l~~~~ 73 (85)
T PF11971_consen 7 APYFPPVEDLTQDLSDGRALCALIHFYCPQLLPL---EDICLKTTM-SQADSLYNLQLLN----SFCQSHLGFSC 73 (85)
T ss_pred CCCCcchhhhhhhhccHHHHHHHHHHhCcceecH---hHcccccch-HHHHhhhhHHHHH----HHHHHHcCCCc
Confidence 3456678888 99999999999999999988764 234322222 2244556665544 46666666443
No 150
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.77 E-value=15 Score=37.16 Aligned_cols=80 Identities=28% Similarity=0.331 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659 305 VEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS 384 (684)
Q Consensus 305 ~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~l 384 (684)
+..++..+.+-|.|.++- +..+-.|.-.+..+.+....++..-.++ -..+.....++.-+...+......++.+
T Consensus 41 leSlEAaLqKQKqK~e~e---k~e~s~LkREnq~l~e~c~~lek~rqKl---shdlq~Ke~qv~~lEgQl~s~Kkqie~L 114 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEE---KNEYSALKRENQSLMESCENLEKTRQKL---SHDLQVKESQVNFLEGQLNSCKKQIEKL 114 (307)
T ss_pred HHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhHHHHHHHHHHHHHHh---hHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666664432 3444555555555555555555443333 3333333334444444444443333333
Q ss_pred HHHHHH
Q psy11659 385 EFENKK 390 (684)
Q Consensus 385 e~e~~~ 390 (684)
+.++++
T Consensus 115 eqelkr 120 (307)
T PF10481_consen 115 EQELKR 120 (307)
T ss_pred HHHHHH
Confidence 333333
No 151
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.76 E-value=29 Score=37.94 Aligned_cols=17 Identities=0% Similarity=-0.072 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11659 632 KLIATAFYNLALQKQRQ 648 (684)
Q Consensus 632 ~l~~~a~y~~~~~~~~~ 648 (684)
-=+|-.+|+..+.++=.
T Consensus 582 ~k~V~~v~~~~~~fk~~ 598 (622)
T COG5185 582 HKQVIHVIDITSKFKIN 598 (622)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34567788888777643
No 152
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.75 E-value=9.6 Score=38.33 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 328 QVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
-+.++......|..+.....++|+.+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444
No 153
>KOG0804|consensus
Probab=90.40 E-value=17 Score=39.43 Aligned_cols=10 Identities=10% Similarity=0.541 Sum_probs=4.3
Q ss_pred HHHHHHhhcc
Q psy11659 84 VDYFQEYFDQ 93 (684)
Q Consensus 84 ~~y~~~~l~~ 93 (684)
..||.+.-|.
T Consensus 129 ~~Fy~efNGk 138 (493)
T KOG0804|consen 129 DTFYEEFNGK 138 (493)
T ss_pred HHHHHHcCCC
Confidence 3455443343
No 154
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.00 E-value=44 Score=38.94 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=17.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 380 RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN 416 (684)
Q Consensus 380 ~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~ 416 (684)
+++..+.|+.-|.-.+..-..|+.||+.-...|+..+
T Consensus 516 kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sm 552 (861)
T PF15254_consen 516 KLEASEKENQILGITLRQRDAEIERLRELTRTLQNSM 552 (861)
T ss_pred hHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555554444444444555444444444433
No 155
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.99 E-value=18 Score=36.47 Aligned_cols=32 Identities=9% Similarity=0.358 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 322 LVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 322 l~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
+.++.+.+..|......+.+.+..+..++..+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l 65 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTL 65 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666665544
No 156
>KOG2991|consensus
Probab=89.44 E-value=25 Score=35.26 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHH
Q psy11659 451 LRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMK 494 (684)
Q Consensus 451 l~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~L 494 (684)
|-.+..-|..||..|..+... .+|++|...|.--+....+|
T Consensus 215 LMAKCR~L~qENeElG~q~s~---Gria~Le~eLAmQKs~seEl 255 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASE---GRIAELEIELAMQKSQSEEL 255 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhc---ccHHHHHHHHHHHHhhHHHH
Confidence 456777788999988632222 56666655554333333333
No 157
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.43 E-value=6.5 Score=38.51 Aligned_cols=115 Identities=23% Similarity=0.262 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIF 528 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl~ 528 (684)
.++...+..++.|+..+. ..-.++...|-+++.....++.........+..++..+..+. .++.
T Consensus 70 ~~le~~~~~l~~ELael~--------r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~--------~~~~ 133 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELY--------RSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLE--------EKIK 133 (194)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHH--------HHHH
T ss_pred cccccccccccccccccc--------cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 334445555555555544 111233333334444444444444444444444444333322 2223
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11659 529 ELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKY 579 (684)
Q Consensus 529 e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~ 579 (684)
....++..+...+..+.-.+..+.-....++..+.+.+.|-..+-+|+-..
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333333333444555555555555555555554433
No 158
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.27 E-value=57 Score=39.14 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy11659 448 ITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr 466 (684)
+.+++.++..++.+...+.
T Consensus 290 i~~L~~~l~~l~~~~~~l~ 308 (754)
T TIGR01005 290 IQRLRERQAELRATIADLS 308 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777776666655
No 159
>PF13514 AAA_27: AAA domain
Probab=89.16 E-value=72 Score=40.18 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=25.7
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.++..++..++........+......+......+...+...
T Consensus 550 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 590 (1111)
T PF13514_consen 550 ARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAAL 590 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666666665
No 160
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.05 E-value=8.1 Score=40.90 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 388 NKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 388 ~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
...+.-.+..+..+.+.+..........++.|+
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555443
No 161
>KOG0978|consensus
Probab=88.88 E-value=53 Score=38.30 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhch--------hhHHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659 552 GKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNV--------AALNELKNLRKKNDDKDKMLDDLEKT 623 (684)
Q Consensus 552 ~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~--------~~~~ei~~Lr~ql~e~e~~i~~LE~~ 623 (684)
...+..+....+.....+..++++.+.........++.+......+ .+...+..|+.++......++.++..
T Consensus 509 ~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~ 588 (698)
T KOG0978|consen 509 EEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQ 588 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555544443332211 13444555555555555555555544
Q ss_pred Hhh
Q psy11659 624 LEK 626 (684)
Q Consensus 624 ~~~ 626 (684)
+..
T Consensus 589 ~~e 591 (698)
T KOG0978|consen 589 YAE 591 (698)
T ss_pred HHH
Confidence 443
No 162
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.31 E-value=9.1 Score=37.84 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=23.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 377 ETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN 416 (684)
Q Consensus 377 ~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~ 416 (684)
....+..++.++..|++++..+..+.+.+..+.+.++..+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444666666677777776666666666666555433
No 163
>KOG0018|consensus
Probab=88.14 E-value=70 Score=38.79 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418 (684)
Q Consensus 364 k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~e 418 (684)
+.....+..++......+...+.....+.+.++.+++++..+..-...+...+++
T Consensus 295 ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 295 KENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred chhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555655555555555445555554443
No 164
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.93 E-value=33 Score=34.83 Aligned_cols=27 Identities=41% Similarity=0.369 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
.+|.-++.........+..|+.+++..
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 165
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.66 E-value=39 Score=35.31 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659 338 SYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS 384 (684)
Q Consensus 338 ~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~l 384 (684)
.+.+++..++-++..+ ..++.+...+.+.|.+++.+.......|
T Consensus 138 ~~~EEn~~lqlqL~~l---~~e~~Ekeeesq~LnrELaE~layqq~L 181 (401)
T PF06785_consen 138 HLREENQCLQLQLDAL---QQECGEKEEESQTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHHHHHHHhHHHH---HHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444333333 3334334444455555555544443333
No 166
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.46 E-value=81 Score=38.76 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.7
Q ss_pred HHhHHH
Q psy11659 9 SELCNI 14 (684)
Q Consensus 9 ~~~~~~ 14 (684)
+++.+|
T Consensus 39 SSIldA 44 (908)
T COG0419 39 SSILDA 44 (908)
T ss_pred HHHHHH
Confidence 444444
No 167
>KOG0963|consensus
Probab=87.29 E-value=59 Score=37.02 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=17.8
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659 602 ELKNLRKKNDDKDKMLDDLEKTLEKK 627 (684)
Q Consensus 602 ei~~Lr~ql~e~e~~i~~LE~~~~~~ 627 (684)
.+..++.+..+..+-|..||..+.+.
T Consensus 412 ~~~el~~~~~~~ke~i~klE~dl~~~ 437 (629)
T KOG0963|consen 412 KGEELEAKATEQKELIAKLEQDLLKV 437 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHhhc
Confidence 35566666666667777888877765
No 168
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.09 E-value=45 Score=35.49 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK 413 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~ 413 (684)
+..+..++.++..+...+......+..++.+...+...++.+...+..+..++..++
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555544444444433
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.90 E-value=15 Score=38.97 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11659 393 EKVTSLQREKEKLIVERDSLK 413 (684)
Q Consensus 393 ~~l~~le~e~e~l~~e~~~L~ 413 (684)
++...+....+.....++.|+
T Consensus 113 ~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 170
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.70 E-value=7.6 Score=29.61 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy11659 262 IKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKV-EKYEGIIETYKK 317 (684)
Q Consensus 262 ~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~-~k~e~~le~~k~ 317 (684)
.++.+|..++..|..+++.|. ..+..++.++...+..+.+. .++.+....|++
T Consensus 3 akid~Ls~dVq~L~~kvdqLs---~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~K 56 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLS---SDVNALRADVQAAKEEAARANQRLDNIAQSYKK 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Confidence 356677777888888877666 67777778887777766655 466666666653
No 171
>KOG0979|consensus
Probab=86.65 E-value=82 Score=38.00 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy11659 365 KQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE 403 (684)
Q Consensus 365 ~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e 403 (684)
..+..+...+..........+..+.+.+..+.+++.++.
T Consensus 318 ~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 318 DEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555555555555555555555555555555555443
No 172
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=86.39 E-value=66 Score=36.64 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q psy11659 306 EKYEGIIETYKKK 318 (684)
Q Consensus 306 ~k~e~~le~~k~k 318 (684)
...+.++..||.|
T Consensus 231 ~~~~~el~~Yk~k 243 (511)
T PF09787_consen 231 ESEEAELQQYKQK 243 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 4556667777755
No 173
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.16 E-value=18 Score=37.87 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 493 MKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 493 ~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.|-.++..+..+|..|+.++++.
T Consensus 223 Kl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 223 KLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556555543
No 174
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.16 E-value=81 Score=37.46 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 287 EARYLKDEVDILRE 300 (684)
Q Consensus 287 ~~~~L~deld~lr~ 300 (684)
++..++++.+.+++
T Consensus 580 ~L~~l~e~~~~l~~ 593 (717)
T PF10168_consen 580 ELQELQEERKSLRE 593 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 175
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.14 E-value=43 Score=34.22 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 388 NKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 388 ~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
+..+...+.......+.+..++..|+..++.|.+
T Consensus 188 N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 188 NQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555543
No 176
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.98 E-value=67 Score=36.55 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 386 FENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 386 ~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
.++..+..++..|+.++..-...++.|+.++..++
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666665
No 177
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.68 E-value=39 Score=33.39 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 385 EFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 385 e~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
...+++.+-++.+|+..++.-..+++.|-.-+++|
T Consensus 167 qa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 167 QASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 178
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.32 E-value=85 Score=36.94 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy11659 212 CLVEEKRRL 220 (684)
Q Consensus 212 ~l~~E~~~l 220 (684)
.|..++..+
T Consensus 186 ~L~~dl~~~ 194 (650)
T TIGR03185 186 RLAGDLTNV 194 (650)
T ss_pred HHHHHHHHH
Confidence 334444443
No 179
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.18 E-value=64 Score=35.39 Aligned_cols=12 Identities=25% Similarity=0.312 Sum_probs=6.0
Q ss_pred HHHHHHhcCCCc
Q psy11659 121 LILGCAINCNRK 132 (684)
Q Consensus 121 lvl~~av~~~~~ 132 (684)
|.--|.++.|+.
T Consensus 159 l~~E~vrq~prS 170 (527)
T PF15066_consen 159 LAHECVRQPPRS 170 (527)
T ss_pred hchhhhhCCCCC
Confidence 444555555544
No 180
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.96 E-value=61 Score=34.99 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHHHHHHHhh
Q psy11659 447 PITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 447 ~~~el~~~l~~Le~Enk~Lr 466 (684)
|+..++..+.+|+.|++.+-
T Consensus 329 Plv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 329 PLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999998875
No 181
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.96 E-value=42 Score=33.09 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11659 287 EARYLKDEVDILRETA 302 (684)
Q Consensus 287 ~~~~L~deld~lr~~~ 302 (684)
-++.|++++..++...
T Consensus 28 lIksLKeei~emkk~e 43 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKE 43 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666666666665533
No 182
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.92 E-value=38 Score=32.55 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 330 KQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVER 409 (684)
Q Consensus 330 ~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~ 409 (684)
..|+-.|..|...+.+=..++.++ +..+...-..+.....++.........+..++......+..+..+......++
T Consensus 45 eqLkien~~l~~kIeERn~eL~~L---k~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKL---KKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444444 33333333334444444444445555555555556666666666666666666
Q ss_pred HHHHHHHHHHH
Q psy11659 410 DSLKETNEELK 420 (684)
Q Consensus 410 ~~L~e~~~eL~ 420 (684)
+.++..+..|.
T Consensus 122 ~k~~~~~~~l~ 132 (177)
T PF13870_consen 122 DKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHH
Confidence 66666666664
No 183
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.49 E-value=78 Score=35.80 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
...++..++.+.+..+...+.+-.+.++.+.
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555556655543
No 184
>KOG1962|consensus
Probab=84.01 E-value=18 Score=35.81 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKET 415 (684)
Q Consensus 383 ~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~ 415 (684)
+.+.....++.+.+.+..+.+++..+...|++.
T Consensus 176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 334444444455555555555555444444443
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.32 E-value=94 Score=35.86 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659 196 CMELDMQVSMLQEEKSCLVEEKRRLEERFQEN 227 (684)
Q Consensus 196 ~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~ 227 (684)
+.++.+.+..+......+..+++.++-++.+.
T Consensus 170 ~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 170 WLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444555554444443
No 186
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=83.10 E-value=88 Score=35.36 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659 328 QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRAD 382 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~ 382 (684)
++..++.....+......++.++........++..+.+++.-.+..+.....+.+
T Consensus 325 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 325 EIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555444444455555555555555555555444433
No 187
>KOG0018|consensus
Probab=82.91 E-value=1.2e+02 Score=36.86 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=20.6
Q ss_pred cchhHHhhcCCHHHHHHHHHHHHHHH
Q psy11659 101 VDVHKIVENIDAKELARLMQLILGCA 126 (684)
Q Consensus 101 pd~~~ia~~~d~~el~~ll~lvl~~a 126 (684)
-||..||- -+|.|+..|+.-|-|..
T Consensus 132 GdVE~IA~-k~PkElt~LFEEISgSi 156 (1141)
T KOG0018|consen 132 GDVEKIAG-KNPKELTALFEEISGSI 156 (1141)
T ss_pred ChHHHHhc-cCHHHHHHHHHHHhhhh
Confidence 58889997 48999999999877654
No 188
>KOG0962|consensus
Probab=82.76 E-value=1.4e+02 Score=37.41 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 202 QVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 202 q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
++..|..++..+..++..++...
T Consensus 269 ~~~~l~~e~~~l~~~~~~l~~~i 291 (1294)
T KOG0962|consen 269 QVKLLDSEHKNLKKQISRLREKI 291 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555666666666555444
No 189
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.69 E-value=47 Score=31.95 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy11659 263 KLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKA--EELVDLKKQVKQLESKNLSYI 340 (684)
Q Consensus 263 ~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kl--eel~~l~~~~~~Le~~~~~l~ 340 (684)
+++..-.+|..|+.-+..|+.-..+.+.|.--+|.-|.+..++.+-...+-+|-... +++..+..++.+|+.....+.
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~ 128 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELI 128 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666665555666666667777776666666555555554332 233444444444444433333
No 190
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.37 E-value=25 Score=39.76 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 264 LEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300 (684)
Q Consensus 264 ~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~ 300 (684)
++.++.++..|+..+.++. +.+..|+++++.++.
T Consensus 431 ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r 464 (652)
T COG2433 431 VERLEEENSELKRELEELK---REIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3333344444443333333 334444444444443
No 191
>KOG2046|consensus
Probab=80.69 E-value=11 Score=36.48 Aligned_cols=41 Identities=22% Similarity=0.483 Sum_probs=31.5
Q ss_pred HHhHHHHHHHHhhc-CCCCC-CCCc-cccccHHHHHHHHHhhCC
Q psy11659 9 SELCNILLKWLQTF-TLVAP-HQSL-ADITDGVAMAQALHQIAP 49 (684)
Q Consensus 9 ~~~~~~l~~W~~tf-~~~~~-~~~~-~dL~dG~~l~~vl~~idp 49 (684)
.++..-|+.||... ....+ -.++ .-|-||++|..+++.+.|
T Consensus 24 ~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p 67 (193)
T KOG2046|consen 24 DELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYP 67 (193)
T ss_pred HHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCc
Confidence 56788999999983 33222 3454 457899999999999999
No 192
>KOG0804|consensus
Probab=80.06 E-value=98 Score=33.90 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGN-WKSQVDMYKKQMSELYNQFNEET 378 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~~~-~r~~le~~k~qi~~l~~~l~e~~ 378 (684)
.++++.+++.+..+..........+++... .+..+..+..+|++|+.++.++.
T Consensus 395 ~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 395 QKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 344444444444444333322222222221 24445555566667766666554
No 193
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.58 E-value=85 Score=32.91 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQT 343 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~ 343 (684)
....++|+..+..+..++
T Consensus 98 q~e~~qL~~qnqkL~nqL 115 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQL 115 (401)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 334444444444444333
No 194
>KOG1899|consensus
Probab=78.34 E-value=1.3e+02 Score=34.33 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ 225 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~ 225 (684)
+.+.++.+++.|+ ..++.|+-....|.++++
T Consensus 105 ~~~~yQerLaRLe-------~dkesL~LQvsvLteqVe 135 (861)
T KOG1899|consen 105 EYPEYQERLARLE-------MDKESLQLQVSVLTEQVE 135 (861)
T ss_pred cchHHHHHHHHHh-------cchhhheehHHHHHHHHH
Confidence 4556666666554 445555555556655554
No 195
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.17 E-value=1.4e+02 Score=34.52 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11659 449 TELRQKLVRLTHENNML 465 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~L 465 (684)
.++...+..++.+...+
T Consensus 325 e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQL 341 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 196
>KOG0962|consensus
Probab=77.77 E-value=2e+02 Score=36.14 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 487 VTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 487 ~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.+.....++.....+..++..+..|+...
T Consensus 1006 dnl~~~~l~~q~~e~~re~~~ld~Qi~~~ 1034 (1294)
T KOG0962|consen 1006 DNLTLRNLERKLKELERELSELDKQILEA 1034 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555544
No 197
>KOG1924|consensus
Probab=77.16 E-value=1.6e+02 Score=34.69 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=27.8
Q ss_pred hhhhcHHHHHHHHHHHHHHhhcccccCccccchhHHhhcCCH
Q psy11659 71 LKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDA 112 (684)
Q Consensus 71 l~~~Nl~~i~~~i~~y~~~~l~~~~~~~~~pd~~~ia~~~d~ 112 (684)
+-..|+..|++.+..|+-+.+|..+..-.--.+..+|..-|+
T Consensus 204 ~~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldp 245 (1102)
T KOG1924|consen 204 LDIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDP 245 (1102)
T ss_pred hHHHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCc
Confidence 466899999999999998888864432222224555554443
No 198
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.94 E-value=30 Score=33.97 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=19.0
Q ss_pred cccchhHHhhcC-CHHHHHHHHHHHHHHHhcCCCc
Q psy11659 99 GKVDVHKIVENI-DAKELARLMQLILGCAINCNRK 132 (684)
Q Consensus 99 ~~pd~~~ia~~~-d~~el~~ll~lvl~~av~~~~~ 132 (684)
..+||..|.+-. |..-+++.++ +.|+.++.+
T Consensus 5 ~pVDVRIiVEGAsDvE~iSkalQ---r~aLG~eYn 36 (290)
T COG4026 5 TPVDVRIIVEGASDVEVISKALQ---RLALGSEYN 36 (290)
T ss_pred CcceEEEEeeccchHHHHHHHHH---Hhhhcccce
Confidence 457888887743 5666777766 344444443
No 199
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.90 E-value=72 Score=30.60 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=10.4
Q ss_pred HHHHHHHhHHhhhhhHHHHHHH
Q psy11659 602 ELKNLRKKNDDKDKMLDDLEKT 623 (684)
Q Consensus 602 ei~~Lr~ql~e~e~~i~~LE~~ 623 (684)
++..++..+....++++.++..
T Consensus 153 ~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 153 EVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555554444444444443
No 200
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=75.75 E-value=1.9e+02 Score=34.77 Aligned_cols=53 Identities=9% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK 413 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~ 413 (684)
+.....++.++.+++.++.. ....+.++..|+.+.+..+.-.+.+........
T Consensus 351 ~~~~~~L~~~l~~~~~~~~~----~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 351 QARESQLVSDVNQLKAASAQ----AGEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433332 223355566666666666666666555554443
No 201
>KOG1962|consensus
Probab=75.75 E-value=58 Score=32.28 Aligned_cols=7 Identities=43% Similarity=0.359 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy11659 343 TLDLEEE 349 (684)
Q Consensus 343 ~~~LEee 349 (684)
...|+++
T Consensus 160 ~~kL~~e 166 (216)
T KOG1962|consen 160 LEKLETE 166 (216)
T ss_pred HHHHHHH
Confidence 3333333
No 202
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=75.69 E-value=1.3e+02 Score=32.91 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11659 202 QVSMLQEEKSCLVEEKRRLE 221 (684)
Q Consensus 202 q~~~L~~e~~~l~~E~~~l~ 221 (684)
++..+..+...+..+...+.
T Consensus 82 ~l~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 82 DAAELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 203
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.66 E-value=80 Score=30.54 Aligned_cols=7 Identities=43% Similarity=0.415 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy11659 78 KINEGIV 84 (684)
Q Consensus 78 ~i~~~i~ 84 (684)
.++=+|.
T Consensus 11 ~iilgil 17 (191)
T PF04156_consen 11 LIILGIL 17 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 204
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=75.02 E-value=2.3e+02 Score=35.48 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 492 KMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 492 ~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
..|+-....+.....+++..+.+-
T Consensus 407 ~~L~~~q~QL~~~~~~l~~~L~~~ 430 (1109)
T PRK10929 407 TKLKVANSQLEDALKEVNEATHRY 430 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555544443
No 205
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.34 E-value=57 Score=32.25 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy11659 449 TELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr 466 (684)
+.++.++..++.+...|+
T Consensus 89 p~~~~rlp~le~el~~l~ 106 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLT 106 (206)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 456777777777777776
No 206
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.30 E-value=34 Score=27.10 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 368 SELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 368 ~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
..|..++..+......+..++..|..++..+..+...+....+.-+.+++.+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666667777777788887777777776666666555555533
No 207
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.29 E-value=75 Score=29.55 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 183 QTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 183 ~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
..++..++.-......+...+..+..+...+...+..+
T Consensus 41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL 78 (151)
T PF11559_consen 41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERL 78 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 208
>KOG2129|consensus
Probab=74.20 E-value=1.3e+02 Score=32.44 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy11659 449 TELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr 466 (684)
+.++..+..|+.|...||
T Consensus 249 ~~~~~hi~~l~~EveRlr 266 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLR 266 (552)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556677777777777776
No 209
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=73.58 E-value=1.4e+02 Score=32.31 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 307 KYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 307 k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
+++..+..|+.....+.+.+.+.++.......+...+..+-+++...
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555554444
No 210
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.50 E-value=28 Score=34.18 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 373 QFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK 413 (684)
Q Consensus 373 ~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~ 413 (684)
.+.+...+++.++.++.+|.+.+..+..+..+|....+.|.
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 33333444445555555555555555555555444444444
No 211
>KOG0249|consensus
Probab=73.46 E-value=1.9e+02 Score=33.75 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=23.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 380 RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 380 ~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
++..|..+...++..+..+..+++++....+.|+..++.|+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555555556666666666666655555555555554
No 212
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.94 E-value=65 Score=28.27 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHH
Q psy11659 535 KNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQ 570 (684)
Q Consensus 535 e~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~ 570 (684)
..+..++++++.....+..+...++..+..++..++
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554444444555555555555544444
No 213
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=71.35 E-value=94 Score=29.39 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=25.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE 514 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~ 514 (684)
.++.++..++.+....+..|+...+....++.+.......
T Consensus 34 ~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ 73 (159)
T PF05384_consen 34 KELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR 73 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4555555555666666777777777777777776665544
No 214
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.99 E-value=71 Score=27.85 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.++..++..|+.+....+ .-..+|..+-++.......|..+.....+++.+|+++|.++
T Consensus 12 ~el~n~La~Le~slE~~K--------~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEK--------TSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp --HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544 22234444445555555555555555555555555555443
No 215
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.43 E-value=96 Score=31.79 Aligned_cols=14 Identities=14% Similarity=0.518 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 237 SSMRRQMDALKEEL 250 (684)
Q Consensus 237 ~~L~~qleel~e~l 250 (684)
..|+.||..+++.+
T Consensus 92 ~eLksQL~RMrEDW 105 (305)
T PF15290_consen 92 DELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 216
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.25 E-value=1.2e+02 Score=30.22 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=44.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH---hH-HHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy11659 478 NIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKV---KI-FELQNEIKNLKEQINHQQEEHLEQGK 553 (684)
Q Consensus 478 ~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~---kl-~e~~~ele~~r~~l~~le~q~~~~~~ 553 (684)
.+++..|..+...+...-...+.+..++..++..+.......-..+.. -| .++-.+.......+..++.+++....
T Consensus 34 rem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~ 113 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEE 113 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555542110001100 00 11222223333445555555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q psy11659 554 LIEKLQDSITQKDSEIQDYEE 574 (684)
Q Consensus 554 ~~~~l~~~L~~~e~el~~~e~ 574 (684)
.+..|...+..++..+..+..
T Consensus 114 ~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 114 TLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655554443
No 217
>PRK10869 recombination and repair protein; Provisional
Probab=70.24 E-value=2.1e+02 Score=32.97 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=6.2
Q ss_pred CCHHHHHHHHH
Q psy11659 142 LEESVQQVIMQ 152 (684)
Q Consensus 142 L~~~~Q~~lm~ 152 (684)
|++..|..|-.
T Consensus 137 l~~~~~~~lLD 147 (553)
T PRK10869 137 LKPEHQKTLLD 147 (553)
T ss_pred cCHHHHHHHHH
Confidence 56666665443
No 218
>KOG0046|consensus
Probab=70.12 E-value=4.5 Score=44.59 Aligned_cols=43 Identities=14% Similarity=0.345 Sum_probs=36.9
Q ss_pred hHHHHHHHHhhcCCCCCCCC-ccccccHHHHHHHHHhhCCCcCC
Q psy11659 11 LCNILLKWLQTFTLVAPHQS-LADITDGVAMAQALHQIAPEWFS 53 (684)
Q Consensus 11 ~~~~l~~W~~tf~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~ 53 (684)
....+--|+|++.+..++.. |+||.||.+|.+++..|-|..-+
T Consensus 389 eer~fr~WmNSlgv~p~vn~~f~Dl~dglVllq~~dki~pg~Vn 432 (627)
T KOG0046|consen 389 EERTFRLWMNSLGVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVN 432 (627)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHhhhhhhHHHHHHHHccCCccc
Confidence 34567889999998888765 79999999999999999997655
No 219
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.05 E-value=1.5e+02 Score=31.32 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414 (684)
Q Consensus 360 le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e 414 (684)
+..++.++......+......+..++.+...+...++.....+..+..++..++.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555555666666655555555555544444
No 220
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.94 E-value=33 Score=29.88 Aligned_cols=70 Identities=31% Similarity=0.399 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 279 NSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 279 ~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
+.+..+..+.+.+..+++.+++....++ ..+...+..-++...+..++..+......+......+++++.
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~s---k~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELS---KEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666677777766443333 233333222133344444555555544444444444444433
No 221
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.90 E-value=27 Score=30.65 Aligned_cols=50 Identities=28% Similarity=0.283 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy11659 179 VAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENF 228 (684)
Q Consensus 179 ~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~ 228 (684)
+..+..+......+...+.+|..++..|.++...|.-||..|+.++....
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666677777888888888999999999999998887653
No 222
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.97 E-value=1.3e+02 Score=29.95 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=19.6
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.-|.++...+..++..+...-.....+..++..+...+...
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555444444444
No 223
>KOG4403|consensus
Probab=68.24 E-value=1.9e+02 Score=31.58 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 271 MEDLELKLNSLEETAGEARYLKDEVDILRE 300 (684)
Q Consensus 271 l~~l~~k~~~L~~~a~~~~~L~deld~lr~ 300 (684)
+.++-+.++.|+.....+..++..+...+.
T Consensus 244 v~km~kdle~Lq~aEqsl~dlQk~Lekar~ 273 (575)
T KOG4403|consen 244 VNKMMKDLEGLQRAEQSLEDLQKRLEKARE 273 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455444444444444444443
No 224
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=67.88 E-value=3.2e+02 Score=34.22 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 186 IDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLE 221 (684)
Q Consensus 186 ~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~ 221 (684)
+++.+....+...+++.+.....+...++.++..++
T Consensus 57 l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~ 92 (1109)
T PRK10929 57 LEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNER 92 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 355666666777777777777777666766666543
No 225
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.37 E-value=1.4e+02 Score=31.35 Aligned_cols=14 Identities=29% Similarity=0.197 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 194 QRCMELDMQVSMLQ 207 (684)
Q Consensus 194 ~~~~el~~q~~~L~ 207 (684)
-|+.+|++|..++.
T Consensus 18 iRmreLErqqkE~e 31 (302)
T PF09738_consen 18 IRMRELERQQKEQE 31 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777877765543
No 226
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.69 E-value=1.6e+02 Score=30.25 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 198 ELDMQVSMLQEEKSCLVEEKRRLEER 223 (684)
Q Consensus 198 el~~q~~~L~~e~~~l~~E~~~l~~~ 223 (684)
.-+..+..++.++..++.+++.|..+
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~q 60 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQ 60 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666655443
No 227
>KOG4360|consensus
Probab=66.52 E-value=2.2e+02 Score=31.82 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhh
Q psy11659 454 KLVRLTHENNMLQ 466 (684)
Q Consensus 454 ~l~~Le~Enk~Lr 466 (684)
.+.-..++|=.|.
T Consensus 330 ~i~lt~r~~~qld 342 (596)
T KOG4360|consen 330 KIELTMRKNLQLD 342 (596)
T ss_pred HHHHhhhhhhccc
Confidence 3444555555554
No 228
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=66.48 E-value=2.4e+02 Score=32.16 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy11659 449 TELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr 466 (684)
++++.+...++.++..|+
T Consensus 277 ~~l~~E~~~~~ee~~~l~ 294 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLE 294 (511)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 445555555555555554
No 229
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=66.08 E-value=37 Score=29.91 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659 179 VAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQEN 227 (684)
Q Consensus 179 ~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~ 227 (684)
+..+..+......+...+.+|..++..|.++...|.-||..|+.++.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555556666677777788888899999999999999888764
No 230
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.02 E-value=91 Score=27.20 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=45.8
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKL 554 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~ 554 (684)
.++..|+..+++.+....+|-++...+...+..|+.+-... -+++.+.+ ..|+++-..+++.+..
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~--------~qr~~eLq-------aki~ea~~~le~eK~a 80 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR--------NQRIAELQ-------AKIDEARRNLEDEKQA 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 56677777788887777777666666555555555443332 12222222 2333333333333344
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy11659 555 IEKLQDSITQKDSEIQDYEEKN 576 (684)
Q Consensus 555 ~~~l~~~L~~~e~el~~~e~r~ 576 (684)
..+++..+.+.+.|....+-++
T Consensus 81 k~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 81 KLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 4456666666666655544443
No 231
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=65.69 E-value=90 Score=27.05 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11659 284 TAGEARYLKDEVDILRE 300 (684)
Q Consensus 284 ~a~~~~~L~deld~lr~ 300 (684)
++.+|..|+.....|+.
T Consensus 3 la~eYsKLraQ~~vLKK 19 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKK 19 (102)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666666655
No 232
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=65.61 E-value=1.7e+02 Score=30.09 Aligned_cols=62 Identities=19% Similarity=0.384 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 356 WKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 356 ~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~ 417 (684)
++..+..|..++.+++.-+.+........+.-+..-+..+.++...+..+..........+.
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777776666655555555556666666655555555544444443
No 233
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.12 E-value=2.3e+02 Score=31.44 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 385 EFENKKLQEKVTSLQREKEKLIVERDSL 412 (684)
Q Consensus 385 e~e~~~L~~~l~~le~e~e~l~~e~~~L 412 (684)
+.++..|+.+++..+.-...+.....+.
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556566655555555555444433
No 234
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.35 E-value=1.1e+02 Score=27.48 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=23.4
Q ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHH
Q psy11659 520 AAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQ 570 (684)
Q Consensus 520 ~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~ 570 (684)
...+++-..++. ..+.+++++++.....+.++...++..+...+..++
T Consensus 62 ~vlv~qd~~e~~---~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 62 NLLVKVDKTKVE---KELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHhhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555 444445555554444444555555544444444443
No 235
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=64.22 E-value=80 Score=32.23 Aligned_cols=49 Identities=31% Similarity=0.295 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 372 NQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 372 ~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
.+.+-...+...||.++......+..+..+.+.++.+.-.|.+++.=|.
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445566677788888888888999999999998999999998775
No 236
>PRK10698 phage shock protein PspA; Provisional
Probab=63.98 E-value=1.6e+02 Score=29.42 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=18.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 479 ~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
+++..+.+....+...-...+.+.+++..++..+...
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~ 71 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEW 71 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555555555555544
No 237
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=63.92 E-value=1.3e+02 Score=28.37 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 258 DDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301 (684)
Q Consensus 258 ~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~ 301 (684)
+..+..+..+.+++.+++.++.... .++..|.......|.+
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I---~evD~Le~~er~aR~r 63 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVI---EEVDKLEKRERQARQR 63 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4556666666666666666554433 3344444444344443
No 238
>KOG1937|consensus
Probab=62.62 E-value=2.4e+02 Score=30.97 Aligned_cols=24 Identities=25% Similarity=0.417 Sum_probs=18.3
Q ss_pred CCCccccccHH---HHHHHHHhhCCCc
Q psy11659 28 HQSLADITDGV---AMAQALHQIAPEW 51 (684)
Q Consensus 28 ~~~~~dL~dG~---~l~~vl~~idp~~ 51 (684)
..++.+++.-. +++.+|..|||+-
T Consensus 22 ~~~lseFTteqvveavvrcL~~Idps~ 48 (521)
T KOG1937|consen 22 FEDLSEFTTEQVVEAVVRCLWKIDPSK 48 (521)
T ss_pred chhHhhcCHHHHHHHHHHHHHhcCccc
Confidence 56677776654 6789999999975
No 239
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.52 E-value=2.5e+02 Score=31.04 Aligned_cols=36 Identities=22% Similarity=0.523 Sum_probs=20.6
Q ss_pred HHHHhhcCCCCCCCCccccccHHH-------HHHHHHh-----hCCCcCCh
Q psy11659 16 LKWLQTFTLVAPHQSLADITDGVA-------MAQALHQ-----IAPEWFSE 54 (684)
Q Consensus 16 ~~W~~tf~~~~~~~~~~dL~dG~~-------l~~vl~~-----idp~~f~~ 54 (684)
+-|+-.|+-. .+|.+|+.|.- =++|.+. |-++.|.+
T Consensus 97 FH~~Eafnde---~~fqn~~e~l~~tekPElQs~vynyakds~iKqd~fkE 144 (527)
T PF15066_consen 97 FHWTEAFNDE---ITFQNLTEGLSYTEKPELQSQVYNYAKDSNIKQDSFKE 144 (527)
T ss_pred hhhhhhcccc---ccccccccccCccCCccccccccCccccccccCCcccc
Confidence 4577777533 46677777765 3444444 55555554
No 240
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=62.09 E-value=16 Score=38.46 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~ 516 (684)
+..++++|..|+.-+..|.....+-. .++..|...+.+....+..+..+...+...+..++..+..+.
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~ls-s~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~ls 97 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLS-STISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLS 97 (326)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45578899999988888874333322 566677777777777777777777777777777777776664
No 241
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.04 E-value=1.3e+02 Score=28.46 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 197 MELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 197 ~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
.+|..++..|..+...|..++..+
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444
No 242
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.67 E-value=2e+02 Score=29.61 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhcc
Q psy11659 148 QVIMQSIQELENL 160 (684)
Q Consensus 148 ~~lm~~Iq~~~~~ 160 (684)
..+|.+++.+..+
T Consensus 96 ~S~~silq~If~K 108 (269)
T PF05278_consen 96 PSQVSILQKIFEK 108 (269)
T ss_pred HhHHHHHHHHHHh
Confidence 3455555555544
No 243
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=61.56 E-value=1.6e+02 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=21.0
Q ss_pred hhhHHhH--cCCHHHHHHHHHHHHHHhcc
Q psy11659 134 NYITKIM--ELEESVQQVIMQSIQELENL 160 (684)
Q Consensus 134 ~~I~~I~--~L~~~~Q~~lm~~Iq~~~~~ 160 (684)
.|+.+.. ++++..-..||.++..++..
T Consensus 6 ~~v~~Le~~Gft~~QAe~i~~~l~~~l~~ 34 (177)
T PF07798_consen 6 KFVKRLEAAGFTEEQAEAIMKALREVLND 34 (177)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4666665 78888888999999888754
No 244
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.11 E-value=57 Score=31.04 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKL--DDVTQQVKMKTLENRKANQRILELE 509 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~L--e~~~~~~~~Le~~~~~l~~~i~eLq 509 (684)
.++++++..|+.+++.|+ .++..|.+.+ ++....+..|+.++..+..++..|+
T Consensus 82 ~~L~~el~~l~~~~k~l~--------~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 82 KELREELAELKKEVKSLE--------AELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554 4444444443 3444444444444444444444443
No 245
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=60.46 E-value=4.3e+02 Score=33.12 Aligned_cols=365 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhhhcC--CCccccc
Q psy11659 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVE----------------EKRRLEERFQENF--VEPTNKG 235 (684)
Q Consensus 174 ~~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~----------------E~~~l~~~~~~~~--~~~~~~~ 235 (684)
........+..+......+...+..+...+..+..+...+.. ....+...|.+.+ +-|++..
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~L~~GePCPVCGS~~ 513 (1047)
T PRK10246 434 QIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKDLEAQRAQLQAGQPCPLCGSTS 513 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCccc
Q ss_pred hH------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-----
Q psy11659 236 NS------------------SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEET-AGEARYL----- 291 (684)
Q Consensus 236 ~~------------------~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~-a~~~~~L----- 291 (684)
+. .+...++.+.............+.............+......+... ......+
T Consensus 514 HP~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1047)
T PRK10246 514 HPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQ 593 (1047)
T ss_pred CcCchhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q psy11659 292 -KDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQ---------------------------- 342 (684)
Q Consensus 292 -~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~---------------------------- 342 (684)
...+.............-............+..+...+..++.........
T Consensus 594 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 673 (1047)
T PRK10246 594 PQDDIQPWLDAQEEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQE 673 (1047)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHH
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 343 TLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCC 422 (684)
Q Consensus 343 ~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~ 422 (684)
...++........+...+..++..+..+........................+..+......+..........+......
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 753 (1047)
T PRK10246 674 AQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQ 753 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhccchhhhhhcccccccccccCChHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHH----------HHHHHH
Q psy11659 423 QLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDD----------VTQQVK 492 (684)
Q Consensus 423 q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~----------~~~~~~ 492 (684)
-........+.............-.+..++..+..+......+. ..+..+...+.. ......
T Consensus 754 ~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 825 (1047)
T PRK10246 754 FDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQ--------TLVTQTAQALAQHQQHRPDGLDLTVTVE 825 (1047)
T ss_pred HHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccccccCCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--hHhHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11659 493 MKTLENRKANQRILELEAELKERVTE--DAAGMKVKIFELQNEIKNLKEQINHQQE 546 (684)
Q Consensus 493 ~Le~~~~~l~~~i~eLq~qle~l~~~--~~~~lk~kl~e~~~ele~~r~~l~~le~ 546 (684)
.++.....+...+..+...+..+... .......++.....++......+..+..
T Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1047)
T PRK10246 826 QIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDWGY 881 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 246
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=59.95 E-value=1.9e+02 Score=28.74 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETA 285 (684)
Q Consensus 239 L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a 285 (684)
|.+.+.++++.+.+..............++.++.+....+..+...+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433334444444445555555555555444433
No 247
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=59.25 E-value=2.6e+02 Score=30.15 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 382 DKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 382 ~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
..+......++.++..+-.+...+..+.++|...-.+|
T Consensus 140 ar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 140 ARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555544444433
No 248
>PRK15396 murein lipoprotein; Provisional
Probab=58.73 E-value=56 Score=26.92 Aligned_cols=47 Identities=15% Similarity=0.415 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy11659 267 QSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKV-EKYEGIIETYK 316 (684)
Q Consensus 267 le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~-~k~e~~le~~k 316 (684)
|..++..|..+++.+. ..+..++......+..+.+. .++.+.+..|+
T Consensus 30 LssqV~~L~~kvdql~---~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~ 77 (78)
T PRK15396 30 LSSDVQTLNAKVDQLS---NDVNAMRSDVQAAKDDAARANQRLDNQATKYR 77 (78)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444444433 44555555555555554444 35555555554
No 249
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.61 E-value=1.4e+02 Score=31.68 Aligned_cols=10 Identities=60% Similarity=0.919 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy11659 313 ETYKKKAEEL 322 (684)
Q Consensus 313 e~~k~kleel 322 (684)
..|++|++++
T Consensus 21 r~Y~qKleel 30 (330)
T PF07851_consen 21 RSYKQKLEEL 30 (330)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 250
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.54 E-value=47 Score=29.63 Aligned_cols=37 Identities=22% Similarity=0.467 Sum_probs=30.5
Q ss_pred ccchhHHhhcCCHHHHHHHHHHHHHHHhcCCCchhhh
Q psy11659 100 KVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYI 136 (684)
Q Consensus 100 ~pd~~~ia~~~d~~el~~ll~lvl~~av~~~~~~~~I 136 (684)
.+|+..|++..|..-|..++.-|.+|-+..+....|+
T Consensus 17 ~iDvd~i~~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~ 53 (118)
T PF13815_consen 17 AIDVDRIVRELDIDTLQENIENVTFCDLENEDCQHFV 53 (118)
T ss_pred ccCHHHHHhccCHHHHHHHHHhcceeccChhhccCCC
Confidence 4788889999999999999999999988887766533
No 251
>PRK11281 hypothetical protein; Provisional
Probab=58.15 E-value=4.7e+02 Score=32.87 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 186 IDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEE 222 (684)
Q Consensus 186 ~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~ 222 (684)
.++.+...++..++++++.....+......+++.++.
T Consensus 72 L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 72 LDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3455555666666777777766776666777776654
No 252
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=57.73 E-value=3.7e+02 Score=31.46 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy11659 448 ITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr 466 (684)
++++..++..|..|-..|-
T Consensus 473 ~~dL~~ELqqLReERdRl~ 491 (739)
T PF07111_consen 473 VTDLSLELQQLREERDRLD 491 (739)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5788888888888877775
No 253
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=57.60 E-value=1e+02 Score=25.03 Aligned_cols=13 Identities=0% Similarity=0.146 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYI 340 (684)
Q Consensus 328 ~~~~Le~~~~~l~ 340 (684)
.+.+-.+.+..++
T Consensus 6 ~l~EKDe~Ia~L~ 18 (74)
T PF12329_consen 6 KLAEKDEQIAQLM 18 (74)
T ss_pred HHHhHHHHHHHHH
Confidence 3333333343333
No 254
>KOG1937|consensus
Probab=57.25 E-value=3e+02 Score=30.31 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=6.4
Q ss_pred hHHHHHHHHhhcC
Q psy11659 11 LCNILLKWLQTFT 23 (684)
Q Consensus 11 ~~~~l~~W~~tf~ 23 (684)
+..+++..++-.+
T Consensus 33 vveavvrcL~~Id 45 (521)
T KOG1937|consen 33 VVEAVVRCLWKID 45 (521)
T ss_pred HHHHHHHHHHhcC
Confidence 4445555555444
No 255
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.65 E-value=2.1e+02 Score=29.38 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhHHHH
Q psy11659 554 LIEKLQDSITQKDSEIQ 570 (684)
Q Consensus 554 ~~~~l~~~L~~~e~el~ 570 (684)
-++.....|-.+++.++
T Consensus 132 vieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 132 VIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHhhhchhhhhHH
Confidence 33444444444444444
No 256
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=56.47 E-value=1.7e+02 Score=27.12 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 356 WKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414 (684)
Q Consensus 356 ~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e 414 (684)
.+.+++..++.|....+.+.-+...+.+.+.+++...+......+++..|...+.+|-.
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~ 140 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVS 140 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888888877777778888888888888888888888777766655543
No 257
>KOG4005|consensus
Probab=56.10 E-value=1.2e+02 Score=30.15 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 187 DARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 187 ~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
..+|.-+.|..+++.++.+|.++...|+.|++.|+..-
T Consensus 83 taRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 83 TARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999887543
No 258
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=55.90 E-value=2.5e+02 Score=28.96 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=6.8
Q ss_pred CccccchhHHhh
Q psy11659 97 EFGKVDVHKIVE 108 (684)
Q Consensus 97 ~~~~pd~~~ia~ 108 (684)
+|..|||..+|+
T Consensus 13 nFrtPNF~LVAe 24 (267)
T PF10234_consen 13 NFRTPNFELVAE 24 (267)
T ss_pred HcCCCChHHHHH
Confidence 455566665554
No 259
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.73 E-value=2.5e+02 Score=28.83 Aligned_cols=83 Identities=22% Similarity=0.335 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHHHHHHH
Q psy11659 259 DYRIKLEIQSKQMEDLELKLNSLEE-TAGEARYLKDEVDILRETAEK--------VEKYEGIIETYKKKAE-ELVDLKKQ 328 (684)
Q Consensus 259 ~~~~~~~~le~el~~l~~k~~~L~~-~a~~~~~L~deld~lr~~~~~--------~~k~e~~le~~k~kle-el~~l~~~ 328 (684)
+++.++..|.+....+...+.+... .+..++.|=...+.+...++- +..+..++..++++.+ .+..|..+
T Consensus 10 el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~q 89 (258)
T PF15397_consen 10 ELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQ 89 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444444444433333322 233455555555544443322 4455556666665554 34555555
Q ss_pred HHHHHHHHHHHHH
Q psy11659 329 VKQLESKNLSYIQ 341 (684)
Q Consensus 329 ~~~Le~~~~~l~~ 341 (684)
+..+........+
T Consensus 90 l~~l~akI~k~~~ 102 (258)
T PF15397_consen 90 LEQLDAKIQKTQE 102 (258)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444433
No 260
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=55.59 E-value=1.1e+02 Score=24.61 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDL 346 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~L 346 (684)
.+..|+..+..+..++...
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~ 24 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVH 24 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333
No 261
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=55.18 E-value=2.4e+02 Score=28.49 Aligned_cols=55 Identities=11% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 367 MSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 367 i~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
+.+|+..+......+..++.........+..+....+++...+......+.++..
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~ 134 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRN 134 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666666677777777777777777777777766653
No 262
>PLN02939 transferase, transferring glycosyl groups
Probab=54.94 E-value=4.9e+02 Score=32.05 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q psy11659 206 LQEEKSCLVEEKRRLEERFQENF 228 (684)
Q Consensus 206 L~~e~~~l~~E~~~l~~~~~~~~ 228 (684)
.-.+|+.|+.++..|.-++.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ 183 (977)
T PLN02939 161 ILTEKEALQGKINILEMRLSETD 183 (977)
T ss_pred HHHHHHHHHhhHHHHHHHhhhhh
Confidence 34567888888888877777654
No 263
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.94 E-value=3.5e+02 Score=30.38 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 324 DLKKQVKQLESKNLSYIQQTLDLE 347 (684)
Q Consensus 324 ~l~~~~~~Le~~~~~l~~~~~~LE 347 (684)
.|..+++.|.+.+..+......|-
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt 192 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLT 192 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333
No 264
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.90 E-value=1.8e+02 Score=26.98 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy11659 555 IEKLQDSITQKDSEIQDY 572 (684)
Q Consensus 555 ~~~l~~~L~~~e~el~~~ 572 (684)
..+...++++++.++..+
T Consensus 128 ~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555433
No 265
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=54.55 E-value=2.6e+02 Score=28.69 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL 405 (684)
Q Consensus 369 ~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l 405 (684)
.|..+..........+.........+...|......+
T Consensus 63 ~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l 99 (264)
T PF06008_consen 63 NLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNL 99 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444443333
No 266
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=53.96 E-value=4.7e+02 Score=31.50 Aligned_cols=237 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-ccchHHHHHHHHHHHHHHHH-
Q psy11659 175 VQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPT-NKGNSSMRRQMDALKEELFK- 252 (684)
Q Consensus 175 ~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~-~~~~~~L~~qleel~e~l~~- 252 (684)
++....++-.++.+.+.+.+...||..++..|.++...-..-...+-.-+....++.. .-....++...+...+....
T Consensus 608 ~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~ 687 (984)
T COG4717 608 SPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLA 687 (984)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy11659 253 AESARDDYRIKLEIQSKQMEDLELKLNSLEE-----TAGEARYLKDEVDILRETAEKVEKYEGIIET-YKKKAEELVDLK 326 (684)
Q Consensus 253 ~e~~~~~~~~~~~~le~el~~l~~k~~~L~~-----~a~~~~~L~deld~lr~~~~~~~k~e~~le~-~k~kleel~~l~ 326 (684)
+++.+.-.+.-...|..++...+.++..|-. .+..+..--.+...++....++..++..+.. +-++++=..++.
T Consensus 688 le~~~~~t~El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~ 767 (984)
T COG4717 688 LEGNIERTKELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLD 767 (984)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLI 406 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~ 406 (684)
...-. +..+..+.+.+..+.++...+ .+++.....++..++ .-.....+......+.+++.+.-+.-.++.
T Consensus 768 ~~~~~-e~E~~~lEe~~d~~~ee~~el---~a~v~~~~~qi~~lE-----~g~~~a~lr~~~~slk~~l~e~ar~Wasl~ 838 (984)
T COG4717 768 QRELK-EEELALLEEAIDALDEEVEEL---HAQVAALSRQIAQLE-----GGGTVAELRQRRESLKEDLEEKARKWASLR 838 (984)
T ss_pred hhhhh-hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 407 VERDSLKETNEELK 420 (684)
Q Consensus 407 ~e~~~L~e~~~eL~ 420 (684)
--+.-+.+.++-++
T Consensus 839 ~~~~vl~e~l~~~k 852 (984)
T COG4717 839 LAVQVLEEALRLFK 852 (984)
T ss_pred HHHHHHHHHHHHHH
No 267
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=53.83 E-value=2.6e+02 Score=28.49 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy11659 383 KSEFENKKLQEKVTSLQR 400 (684)
Q Consensus 383 ~le~e~~~L~~~l~~le~ 400 (684)
..+.+...|+.++.....
T Consensus 100 ~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 100 RKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555544443
No 268
>KOG0249|consensus
Probab=53.79 E-value=4.3e+02 Score=31.01 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy11659 272 EDLELKLNSLEE 283 (684)
Q Consensus 272 ~~l~~k~~~L~~ 283 (684)
.++.+.++.+.+
T Consensus 142 ael~qr~~al~~ 153 (916)
T KOG0249|consen 142 AELAQRNAALTK 153 (916)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 269
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=53.69 E-value=4.4e+02 Score=31.18 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 236 NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEK 304 (684)
Q Consensus 236 ~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~ 304 (684)
...|+.+++.|++++.+.....+..- ---|...|..|+.+++.-...+-.+-.|++.++.|+....+
T Consensus 431 ~~~Le~elekLk~eilKAk~s~~~~~--~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sK 497 (762)
T PLN03229 431 VRELEGEVEKLKEQILKAKESSSKPS--ELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSK 497 (762)
T ss_pred CccHHHHHHHHHHHHHhcccccCCCC--ChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 45677888888887765411101000 02344556666766666566667788899999999864444
No 270
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=53.65 E-value=2.8e+02 Score=28.90 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11659 191 QMAQRCMELDMQVSMLQEE 209 (684)
Q Consensus 191 ~l~~~~~el~~q~~~L~~e 209 (684)
+++.+..||.+|+.--++|
T Consensus 4 d~QN~N~EL~kQiEIcqEE 22 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEE 22 (351)
T ss_pred hhhhhcHHHHHHHHHHHHH
Confidence 4444555555555544443
No 271
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=53.40 E-value=2.6e+02 Score=28.44 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy11659 408 ERDSLKETNEEL 419 (684)
Q Consensus 408 e~~~L~e~~~eL 419 (684)
....+...+..|
T Consensus 55 k~~eaee~~~rL 66 (246)
T PF00769_consen 55 KRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 272
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=53.34 E-value=1.7e+02 Score=26.22 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11659 496 LENRKANQRILELEAELKER 515 (684)
Q Consensus 496 ~~~~~l~~~i~eLq~qle~l 515 (684)
..+..+...+.+....++++
T Consensus 27 ~qk~~le~qL~E~~~al~El 46 (119)
T COG1382 27 LQKQQLEAQLKEIEKALEEL 46 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555
No 273
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.20 E-value=1.4e+02 Score=31.70 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHH
Q psy11659 600 LNELKNLRKKNDDKDKMLDDLEKTL 624 (684)
Q Consensus 600 ~~ei~~Lr~ql~e~e~~i~~LE~~~ 624 (684)
...+++|+..+.++...+..+|..+
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 4456777777777777777777663
No 274
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.17 E-value=61 Score=23.62 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 384 SEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 384 le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
+|.++..|+...+.|..+.++|..+.+.|...+..|
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555544
No 275
>KOG4005|consensus
Probab=52.96 E-value=2.3e+02 Score=28.34 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 368 SELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 368 ~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
.++...+.++..+...|..++..|+...+.|-.+-..+..++..+.+.+.++..
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 334444444444555666666677777666666666666666666666666653
No 276
>PRK02119 hypothetical protein; Provisional
Probab=52.55 E-value=1.3e+02 Score=24.49 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 325 LKKQVKQLESKNLSYIQQTLDLEEE 349 (684)
Q Consensus 325 l~~~~~~Le~~~~~l~~~~~~LEee 349 (684)
+..++..|+.+.......+..|.+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~ 31 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQA 31 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555554444444444433
No 277
>KOG2991|consensus
Probab=52.49 E-value=2.7e+02 Score=28.26 Aligned_cols=94 Identities=27% Similarity=0.299 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhchHHHHHHH
Q psy11659 305 VEKYEGIIETYKKKAEELV----------------DLKKQVKQLESKNLSYIQ-----QTLDLEEELKKNGNWKSQVDMY 363 (684)
Q Consensus 305 ~~k~e~~le~~k~kleel~----------------~l~~~~~~Le~~~~~l~~-----~~~~LEeel~~~~~~r~~le~~ 363 (684)
..++.+.++..+.|+++.. -|..+...|...|..+-. ++..|+-++.-- ++..+.+
T Consensus 179 F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQ---Ks~seEl 255 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQ---KSQSEEL 255 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHH---HhhHHHH
Confidence 4577777777777777653 244555666666655432 455555554444 4555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy11659 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQRE 401 (684)
Q Consensus 364 k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e 401 (684)
+....+|..-+.++...++.....+--|+.++..-.++
T Consensus 256 kssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~ 293 (330)
T KOG2991|consen 256 KSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKE 293 (330)
T ss_pred HHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 55555554444444444444444444444444444433
No 278
>PRK11281 hypothetical protein; Provisional
Probab=51.72 E-value=5.9e+02 Score=32.05 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=17.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
..+......+................+.+....++.|++-+
T Consensus 292 ~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 292 QRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333344444444455555555555
No 279
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=51.53 E-value=2.9e+02 Score=28.43 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 394 KVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 394 ~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
++..++.+..++...+..++.+++.+
T Consensus 236 rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 236 RLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444433
No 280
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.03 E-value=1.2e+02 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 257 RDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300 (684)
Q Consensus 257 ~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~ 300 (684)
++.+=..|++|..+...|+.+...+. .+...|.+..+..+.
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~---~ER~~L~ekne~Ar~ 49 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWR---EERAQLLEKNEQARQ 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34455556666666666665555444 444555555555544
No 281
>PF14992 TMCO5: TMCO5 family
Probab=51.01 E-value=3e+02 Score=28.48 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy11659 268 SKQMEDLE 275 (684)
Q Consensus 268 e~el~~l~ 275 (684)
+..+..|.
T Consensus 31 E~~iq~Le 38 (280)
T PF14992_consen 31 EGAIQSLE 38 (280)
T ss_pred HHHHHHHH
Confidence 33333333
No 282
>PRK10869 recombination and repair protein; Provisional
Probab=50.30 E-value=4.5e+02 Score=30.27 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11659 449 TELRQKLVRLTHENNML 465 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~L 465 (684)
.++-.....++.+...|
T Consensus 320 ~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 320 EELPQHHQQLLEEQQQL 336 (553)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444444
No 283
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=48.50 E-value=51 Score=33.64 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 182 LQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEE 222 (684)
Q Consensus 182 l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~ 222 (684)
|.-+..+||+..+|+.||+.++..+......|+.|++.|+.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999888877777777777777653
No 284
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=48.24 E-value=1.1e+02 Score=24.39 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTL 344 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~ 344 (684)
++..|+.+.+.....+.
T Consensus 5 Ri~~LE~~la~qe~~ie 21 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIE 21 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 285
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.14 E-value=3.1e+02 Score=27.82 Aligned_cols=6 Identities=33% Similarity=0.534 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy11659 453 QKLVRL 458 (684)
Q Consensus 453 ~~l~~L 458 (684)
++..|+
T Consensus 128 eR~~Rl 133 (251)
T PF11932_consen 128 ERQERL 133 (251)
T ss_pred HHHHHH
Confidence 344444
No 286
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=48.12 E-value=2.8e+02 Score=27.22 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=30.1
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy11659 601 NELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLAL 643 (684)
Q Consensus 601 ~ei~~Lr~ql~e~e~~i~~LE~~~~~~~~E~~l~~~a~y~~~~ 643 (684)
..+..|+.+|.+++.+|=.||.++-+=++.+ |-=++--.-.|
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkY-LEEs~mrq~a~ 98 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKY-LEESAMRQFAM 98 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3588999999999999999999987754433 33344433333
No 287
>KOG4603|consensus
Probab=48.11 E-value=2.5e+02 Score=26.67 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=28.5
Q ss_pred hhHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy11659 475 GKLNIVNAKL--DDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGM 523 (684)
Q Consensus 475 ~~l~~L~~~L--e~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~l 523 (684)
.+|..|.+-| ++....++.|.++.+....++..+++......+++-.+.
T Consensus 107 aEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 107 AEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 5555565544 455666666666666666666666665555544443333
No 288
>PF15294 Leu_zip: Leucine zipper
Probab=48.03 E-value=3.4e+02 Score=28.15 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRK 500 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~ 500 (684)
+=+...+.+|+.||..|+ .++..++.+-...-+....++...+.
T Consensus 128 ~ll~kEi~rLq~EN~kLk--------~rl~~le~~at~~l~Ek~kl~~~L~~ 171 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLK--------ERLKSLEKQATSALDEKSKLEAQLKE 171 (278)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336788999999999999 77766665554444444444444433
No 289
>KOG4603|consensus
Probab=47.76 E-value=2e+02 Score=27.27 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 381 ADKSEFENKKLQEKV--TSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 381 ~~~le~e~~~L~~~l--~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
+.-.+.+++.|...| ..++.+...|..++...++++..++
T Consensus 102 ~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 102 CSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433 4455555555556666666666554
No 290
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=47.31 E-value=3.1e+02 Score=27.53 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=21.6
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.-|.+.+..|..+.+.+..+-...+.+..++..++...+..
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555554
No 291
>KOG3091|consensus
Probab=47.22 E-value=4.5e+02 Score=29.40 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300 (684)
Q Consensus 234 ~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~ 300 (684)
.++..++..+-+|...+.++--..+-++.+=-.|...-++|+.+++.|.+....=.+++-.++.|.+
T Consensus 376 ~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e 442 (508)
T KOG3091|consen 376 AKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQLKARLDELYE 442 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4555666666666666655433333333322223334455555555555544444555555555544
No 292
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=46.76 E-value=3.2e+02 Score=27.47 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEE 283 (684)
Q Consensus 241 ~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~ 283 (684)
+-+.+.+..+................++.++.++......+..
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444444444443
No 293
>KOG3000|consensus
Probab=46.33 E-value=20 Score=37.36 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCc
Q psy11659 12 CNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEW 51 (684)
Q Consensus 12 ~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~ 51 (684)
-..++.|+|.+ +......+++|+.|.+..++++-+-|.-
T Consensus 17 R~E~laW~N~~-l~~n~~kIEe~~tGaaycqlmd~l~p~~ 55 (295)
T KOG3000|consen 17 RLEILAWINDL-LQLNLTKIEELCTGAAYCQLMDMLFPPD 55 (295)
T ss_pred hHHHHHHHHhh-hhcchhhhhhhcccchhhhhhhhccCCc
Confidence 34689999998 5777889999999999999999998843
No 294
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=46.22 E-value=2.8e+02 Score=26.69 Aligned_cols=31 Identities=29% Similarity=0.262 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHhhH
Q psy11659 453 QKLVRLTHENNMLQMNQKDDIEGKLNIVNAKL 484 (684)
Q Consensus 453 ~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~L 484 (684)
+++..|+.|.-.|...+.-+. .+|..|+..|
T Consensus 120 ekLe~LE~E~~rLt~~Q~~ae-~Ki~~LE~KL 150 (178)
T PF14073_consen 120 EKLEKLEKEYLRLTATQSLAE-TKIKELEEKL 150 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 556666777766653322222 4555555444
No 295
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.13 E-value=1.4e+02 Score=26.15 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 385 EFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 385 e~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
-.++..|+..+..+..+-.+|+.+.+.|++.+.++.
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666666666666677777666654
No 296
>KOG2077|consensus
Probab=45.98 E-value=5e+02 Score=29.55 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 175 VQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 175 ~~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
..++..+-..|+..+..|.--..+|--+|.+|.-++.-|+-|+...
T Consensus 303 VeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~ 348 (832)
T KOG2077|consen 303 VENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAV 348 (832)
T ss_pred HHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHH
Confidence 3344445556666666666666667667777776666666666543
No 297
>KOG4360|consensus
Probab=45.89 E-value=4.8e+02 Score=29.31 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhh--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAK--L--DDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~--L--e~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
+-|+++|.-++.||..|+ .+...+..+ + +-.+.....+.++.+..+.++..++..++..
T Consensus 162 EaL~ekLk~~~een~~lr--------~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~k 224 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLR--------SKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSK 224 (596)
T ss_pred HHHHhhcCChHHHHHHHH--------HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777888888887 333222211 1 1222333455666666666666555544443
No 298
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.56 E-value=1.8e+02 Score=31.27 Aligned_cols=86 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy11659 321 ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQR 400 (684)
Q Consensus 321 el~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~ 400 (684)
++......+...+.....+...+..|..++... ..+...+..++...+.++.....-+..|..|..++...+..+..
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~---~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~ 305 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEA---QKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEE 305 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q psy11659 401 EKEKLIVER 409 (684)
Q Consensus 401 e~e~l~~e~ 409 (684)
....+....
T Consensus 306 ~~~~l~GD~ 314 (344)
T PF12777_consen 306 QLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHH
T ss_pred HhcccHHHH
No 299
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.38 E-value=1.8e+02 Score=32.35 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659 198 ELDMQVSMLQEEKSCLVEEKRRLEERFQ 225 (684)
Q Consensus 198 el~~q~~~L~~e~~~l~~E~~~l~~~~~ 225 (684)
++..++..|..+...|..||+.|+.+-.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444555556666666776655443
No 300
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=45.12 E-value=5.8e+02 Score=30.08 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h--HhHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTE--D--AAGMK 524 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~--~--~~~lk 524 (684)
..|+.++..++.+...-+ .++..-++++..-++-...|...+.....-+.++...+.+++.. . ....+
T Consensus 987 ekLr~rL~q~eaeR~~~r--------eqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~ 1058 (1480)
T COG3096 987 EKLRQRLEQAEAERTRAR--------EQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERAR 1058 (1480)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHH
Confidence 667778888888777777 77777888888888888888888888888888999988888521 1 11234
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q psy11659 525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEE 574 (684)
Q Consensus 525 ~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~ 574 (684)
.+-.+....+...|.+...+++++.-.......|...+++.++|...+.+
T Consensus 1059 ~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re 1108 (1480)
T COG3096 1059 IRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMRE 1108 (1480)
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45567777777778888888888777777777888888888887765544
No 301
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=44.62 E-value=43 Score=28.99 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHH
Q psy11659 553 KLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTL 624 (684)
Q Consensus 553 ~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~ 624 (684)
.....++.....++.++..+... .|++|..+...-...... +......|..++.+.+..+..|...+
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTas---LFeEAN~MVa~ar~e~~~--~e~k~~~le~~l~e~~~~l~~lq~qL 74 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTAS---LFEEANKMVADARRERAA--LEEKNEQLEKQLKEKEALLESLQAQL 74 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHCTTHHCHCCCHCTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544433 266666666444433322 34455666667766666665544443
No 302
>PRK04406 hypothetical protein; Provisional
Probab=44.51 E-value=1.7e+02 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEE 348 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEe 348 (684)
..++..|+.+.+.....+..|.+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~ 32 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELND 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444443
No 303
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.47 E-value=6.2e+02 Score=30.20 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHHh
Q psy11659 601 NELKNLRKKNDDKDKMLDDLEKTLE 625 (684)
Q Consensus 601 ~ei~~Lr~ql~e~e~~i~~LE~~~~ 625 (684)
.....+++-|.+-...|..+-+..+
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik 709 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIK 709 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544433
No 304
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.98 E-value=4.8e+02 Score=28.79 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhh
Q psy11659 633 LIATAFYNLALQKQRQTADNRLA 655 (684)
Q Consensus 633 l~~~a~y~~~~~~~~~~~~~r~~ 655 (684)
++++.+.-+|+.+=...++.++.
T Consensus 404 ~~~Gl~lg~~~~~l~e~ld~~i~ 426 (444)
T TIGR03017 404 IFLGMLLGIGFAFLAELMDRRVR 426 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 44455555566655655555553
No 305
>KOG4809|consensus
Probab=43.92 E-value=5.3e+02 Score=29.24 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q psy11659 241 RQMDALKEELFKAESARDDYRIKL 264 (684)
Q Consensus 241 ~qleel~e~l~~~e~~~~~~~~~~ 264 (684)
.++....++++-+.....+.+.++
T Consensus 236 ae~~~~~~e~~llr~t~~~~e~ri 259 (654)
T KOG4809|consen 236 AELLTTKEEQFLLRSTDPSGEQRI 259 (654)
T ss_pred HHhhhHHHHHHHHHhcCchHHHHH
Confidence 444555555655544444555544
No 306
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=43.70 E-value=2.2e+02 Score=24.75 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=7.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy11659 382 DKSEFENKKLQEKVTSLQ 399 (684)
Q Consensus 382 ~~le~e~~~L~~~l~~le 399 (684)
+.|.|-+.+|..++..|+
T Consensus 50 dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 50 DSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 307
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=43.51 E-value=4.7e+02 Score=28.53 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhh
Q psy11659 243 MDALKEELFKAES 255 (684)
Q Consensus 243 leel~e~l~~~e~ 255 (684)
+-+++..|..+|.
T Consensus 211 ~a~LE~RL~~LE~ 223 (388)
T PF04912_consen 211 AADLEKRLARLES 223 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 308
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.12 E-value=6.5e+02 Score=30.06 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 196 CMELDMQVSMLQEEKSCLVEEKRRLEER 223 (684)
Q Consensus 196 ~~el~~q~~~L~~e~~~l~~E~~~l~~~ 223 (684)
..-++.++..+..+.......+..++.+
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555443
No 309
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=43.02 E-value=3.4e+02 Score=26.73 Aligned_cols=12 Identities=8% Similarity=0.434 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMS 368 (684)
Q Consensus 357 r~~le~~k~qi~ 368 (684)
+.+++.++.++.
T Consensus 137 ~~e~erL~aeL~ 148 (202)
T PF06818_consen 137 RREVERLRAELQ 148 (202)
T ss_pred HHHHHHHHHHHH
Confidence 333343333333
No 310
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.91 E-value=4.9e+02 Score=28.54 Aligned_cols=16 Identities=6% Similarity=0.409 Sum_probs=10.2
Q ss_pred hcHHHHHHHHHHHHHH
Q psy11659 74 SNLKKINEGIVDYFQE 89 (684)
Q Consensus 74 ~Nl~~i~~~i~~y~~~ 89 (684)
.++-.|-+.|..|.+.
T Consensus 62 ~~i~~lqkkL~~y~~~ 77 (395)
T PF10267_consen 62 QTIAQLQKKLEQYHKR 77 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666777777643
No 311
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=42.78 E-value=3.2e+02 Score=26.43 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11659 304 KVEKYEGIIETYKKKAEEL 322 (684)
Q Consensus 304 ~~~k~e~~le~~k~kleel 322 (684)
-+.++.+.+..||++..++
T Consensus 17 Lv~~LQ~KV~qYr~rc~el 35 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAEL 35 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455556666666654443
No 312
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.75 E-value=6.6e+02 Score=30.01 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy11659 238 SMRRQMDALKEELFKAESARDDYRIK 263 (684)
Q Consensus 238 ~L~~qleel~e~l~~~e~~~~~~~~~ 263 (684)
-+..++..++.++...|.++.+++.+
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554555544
No 313
>KOG1103|consensus
Probab=42.03 E-value=4.5e+02 Score=27.84 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 386 FENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 386 ~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
.+...|+.+++..++.-.-+..+..+|++.+..++.
T Consensus 252 iEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 252 IEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334445555555444444455555556665555554
No 314
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.84 E-value=3.1e+02 Score=31.31 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy11659 286 GEARYLKDEVDILRE 300 (684)
Q Consensus 286 ~~~~~L~deld~lr~ 300 (684)
..+..|++++..++.
T Consensus 71 ~~~~~l~~~l~~l~~ 85 (525)
T TIGR02231 71 ERLAELRKQIRELEA 85 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456667777766655
No 315
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.77 E-value=1.4e+02 Score=21.82 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 190 DQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEER 223 (684)
Q Consensus 190 d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~ 223 (684)
+.|...|..|......|..++..|..++..++..
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555545555555555555555555443
No 316
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.70 E-value=5.4e+02 Score=28.70 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 191 QMAQRCMELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 191 ~l~~~~~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
.+......+..++..+..+...|..+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777776666543
No 317
>PRK00736 hypothetical protein; Provisional
Probab=41.32 E-value=1.8e+02 Score=23.16 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDLE 347 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LE 347 (684)
++..|+.+.......+..|.
T Consensus 6 Ri~~LE~klafqe~tie~Ln 25 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELS 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 318
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=41.28 E-value=1.7e+02 Score=32.42 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 278 LNSLEETAGEARYLKDEVDILRETAEKV 305 (684)
Q Consensus 278 ~~~L~~~a~~~~~L~deld~lr~~~~~~ 305 (684)
++.+..+..+.+.+..+++.++.....+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~ 54 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNAL 54 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666644333
No 319
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.18 E-value=1.8e+02 Score=25.62 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 387 ENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 387 e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
++..|+..+..+..+-..|+.+.+.|++.+.++
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555555555566666666655
No 320
>KOG1850|consensus
Probab=40.86 E-value=4.5e+02 Score=27.60 Aligned_cols=235 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhcC--CCccccchHHHHHHH
Q psy11659 181 ELQTVIDARDQMAQRCMELDMQVSMLQEE---------------KSCLVEEKRRLEERFQENF--VEPTNKGNSSMRRQM 243 (684)
Q Consensus 181 ~l~~~~~e~d~l~~~~~el~~q~~~L~~e---------------~~~l~~E~~~l~~~~~~~~--~~~~~~~~~~L~~ql 243 (684)
.+....-.++.|..-|.++++-+-.+.++ ...++.-+.+....+.... +......-..|...+
T Consensus 67 ~l~kt~larsKLeelCRelQr~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKl 146 (391)
T KOG1850|consen 67 ILLKTELARSKLEELCRELQRANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKL 146 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 244 DALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELV 323 (684)
Q Consensus 244 eel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~ 323 (684)
..+-+++...+..++..-.+.+ +..++...+.....+.....+-...+..--.+.....--..++..-..=-..-+++.
T Consensus 147 keL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~ 225 (391)
T KOG1850|consen 147 KELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLA 225 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy11659 324 DLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE 403 (684)
Q Consensus 324 ~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e 403 (684)
.+.....+++.....-.+--..+..++.+. -..+-.+.++..-...++.+....+-.+..++.-.-..+..++..++
T Consensus 226 lY~aKyeefq~tl~KSNE~F~~fK~E~ekm---tKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq 302 (391)
T KOG1850|consen 226 LYMAKYEEFQTTLAKSNELFTKFKQEMEKM---TKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQ 302 (391)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11659 404 KLIVERDSLKETNEEL 419 (684)
Q Consensus 404 ~l~~e~~~L~e~~~eL 419 (684)
+|..-+..|+..-.+|
T Consensus 303 ~LekLcRALq~ernel 318 (391)
T KOG1850|consen 303 RLEKLCRALQTERNEL 318 (391)
T ss_pred HHHHHHHHHHhccccH
No 321
>PRK04325 hypothetical protein; Provisional
Probab=40.68 E-value=2e+02 Score=23.38 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEE 348 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEe 348 (684)
.++..|+.+.......+..|.+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~ 30 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNA 30 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 322
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=40.44 E-value=1.7e+02 Score=31.45 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=11.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLEN 498 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~ 498 (684)
..+..+..+++.....+..+|.+.
T Consensus 158 ~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 158 SEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444444444443
No 323
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=40.08 E-value=1.7e+02 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhhh
Q psy11659 241 RQMDALKEELFKAESA 256 (684)
Q Consensus 241 ~qleel~e~l~~~e~~ 256 (684)
..+.+|+..++-.+..
T Consensus 4 ~Ri~~LE~~la~qe~~ 19 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDT 19 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 324
>PLN02678 seryl-tRNA synthetase
Probab=39.66 E-value=1.9e+02 Score=32.26 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 278 LNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 278 ~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
++.+..+..+.+.+..+++.++.....+++.-..+ +..-++..++..+++.+.++...+......+++++.
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~---k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKL---KIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666444443332221 111122333344444444444444444444444433
No 325
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.59 E-value=4.5e+02 Score=29.99 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 191 QMAQRCMELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 191 ~l~~~~~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
++..++..++.++..+..++..+...+..+
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444
No 326
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.42 E-value=1.9e+02 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy11659 369 ELYNQFNEETKRADKSEFENKKLQEK 394 (684)
Q Consensus 369 ~l~~~l~e~~~~~~~le~e~~~L~~~ 394 (684)
.+..++.+...+...|+.++..|+.+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333333333333333333
No 327
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=39.33 E-value=3.1e+02 Score=25.18 Aligned_cols=29 Identities=28% Similarity=0.217 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
.+..+.+|-.=...+...+..++.++.+|
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 44444444444444444455555555444
No 328
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=38.93 E-value=3.7e+02 Score=26.00 Aligned_cols=154 Identities=23% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Q psy11659 274 LELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKK------------QVKQLESKNLSYIQ 341 (684)
Q Consensus 274 l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~------------~~~~Le~~~~~l~~ 341 (684)
+..=+.+...+....+....-.|.|-..+..+.+--..+..|.+-+..+.++.. ++..|...|..+..
T Consensus 5 i~~il~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~ 84 (181)
T PF05769_consen 5 IEQILADAKRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQ 84 (181)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy11659 342 QTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE---KLIVERDSLKETNEE 418 (684)
Q Consensus 342 ~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e---~l~~e~~~L~e~~~e 418 (684)
.+.+.+.-+.-+ +..|+.++..+- ...+......-.. .+.........+|.+
T Consensus 85 ~leEhq~alelI------M~KyReq~~~l~-------------------~~~k~~~~~~~~~~~~~~~~~~~~~~~kI~E 139 (181)
T PF05769_consen 85 SLEEHQSALELI------MSKYREQMSQLM-------------------MASKFDDTEPYLEANEQLSKEVQSQAEKICE 139 (181)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHH-------------------HHhhhhhhhHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHhhhccchhhhhhcccccccccccCChHHHHHHHHHHHHHHHHhh
Q psy11659 419 LKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 419 L~~~q~~~~~~~~l~~~~~~~~~~~e~~~~~el~~~l~~Le~Enk~Lr 466 (684)
.-..=..... +.... . .+.++.|.+|+.||+.||
T Consensus 140 M~~vM~~ai~---~de~~----------~-~~~qe~i~qL~~EN~~LR 173 (181)
T PF05769_consen 140 MAAVMRKAIE---LDEEN----------S-QEEQEIIAQLETENKGLR 173 (181)
T ss_pred HHHHHHHHHh---cchhh----------h-HhHHHHHHHHHHHHHHHH
No 329
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=38.84 E-value=5.5e+02 Score=28.65 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 553 KLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588 (684)
Q Consensus 553 ~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~ 588 (684)
......+..+..++++......-|..++.+.++...
T Consensus 366 ~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~ 401 (458)
T COG3206 366 SKLPKLQVQLRELEREAEAARSLYETLLQRYQELSI 401 (458)
T ss_pred hhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666667776666667676666665543
No 330
>PRK00736 hypothetical protein; Provisional
Probab=38.79 E-value=2e+02 Score=22.92 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy11659 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDL 274 (684)
Q Consensus 241 ~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l 274 (684)
..+.+|+..++-.|..++++...+....++|..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L 38 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQM 38 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444444433333333333
No 331
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=38.78 E-value=2e+02 Score=31.87 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 279 NSLEETAGEARYLKDEVDILRETAEKV 305 (684)
Q Consensus 279 ~~L~~~a~~~~~L~deld~lr~~~~~~ 305 (684)
+.+..+..+.+.+..+++.++.....+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~ 56 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNEL 56 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666666666544333
No 332
>PRK02793 phi X174 lysis protein; Provisional
Probab=38.77 E-value=2.1e+02 Score=23.11 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEE 348 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEe 348 (684)
.++..|+.+.+.....+..|.+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~ 29 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNV 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444444433
No 333
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=38.69 E-value=2e+02 Score=25.11 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11659 192 MAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQE 226 (684)
Q Consensus 192 l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~ 226 (684)
+...+..+.+++..|.++...|+-||+.|+++++.
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 33444555566777788889999999999999987
No 334
>PRK00295 hypothetical protein; Provisional
Probab=38.66 E-value=2e+02 Score=22.90 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDLEE 348 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LEe 348 (684)
++..|+.+.+.....+..|.+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~ 26 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALND 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 335
>PF15456 Uds1: Up-regulated During Septation
Probab=38.09 E-value=3.1e+02 Score=24.80 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 322 LVDLKKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 322 l~~l~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
+.++++++..|......+..++. ++..++
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~-le~k~R 52 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA-LESKIR 52 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 33344444444444443333333 444333
No 336
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.95 E-value=5.6e+02 Score=27.80 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11659 396 TSLQREKEKLIVERDSLK 413 (684)
Q Consensus 396 ~~le~e~e~l~~e~~~L~ 413 (684)
..+..++..+...+..++
T Consensus 249 ~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 249 TEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 337
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=37.67 E-value=3.2e+02 Score=24.87 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 446 VPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELE 509 (684)
Q Consensus 446 ~~~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq 509 (684)
+|...|..-+..|++|...|. ..+..+.-.|+...+..+....+.+..-.++..+.
T Consensus 51 Ms~~~l~~llkqLEkeK~~Le--------~qlk~~e~rLeQEsKAyhk~ndeRr~ylaEi~~~s 106 (129)
T PF15372_consen 51 MSVESLNQLLKQLEKEKRSLE--------NQLKDYEWRLEQESKAYHKANDERRQYLAEISQTS 106 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 444777888899999999997 77888888899888888888888777766666554
No 338
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=37.62 E-value=2.5e+02 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDLEEEL 350 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LEeel 350 (684)
+|+.+++....+..++..++..+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 339
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.86 E-value=3.1e+02 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
+..++..+++..+.+......++..+.++
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 340
>KOG4196|consensus
Probab=36.63 E-value=3.3e+02 Score=24.70 Aligned_cols=40 Identities=33% Similarity=0.410 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 381 ADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 381 ~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
...||.++..|..+++.|..+..++..+++.++...+.|.
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999999998887764
No 341
>PRK00295 hypothetical protein; Provisional
Probab=35.81 E-value=2.3e+02 Score=22.63 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy11659 240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLE 275 (684)
Q Consensus 240 ~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~ 275 (684)
...+.+|+..++-.|..++++...+....+++..++
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~ 39 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQ 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444433333333333
No 342
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.78 E-value=4e+02 Score=29.73 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=18.5
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEA 510 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~ 510 (684)
+.+..|-.++-+.++....+..+++.+..+...|+.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555544444
No 343
>KOG3478|consensus
Probab=35.58 E-value=3.1e+02 Score=24.10 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=23.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHH
Q psy11659 521 AGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQ 570 (684)
Q Consensus 521 ~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~ 570 (684)
..+|+.+.++. ..+..++++.. ..+..++..++.++.++.
T Consensus 61 vLvkqel~EAr---~nV~kRlefI~-------~Eikr~e~~i~d~q~e~~ 100 (120)
T KOG3478|consen 61 VLVKQELEEAR---TNVGKRLEFIS-------KEIKRLENQIRDSQEEFE 100 (120)
T ss_pred hhhHHHHHHHH---hhHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34566666655 56667777766 444555555555555554
No 344
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=35.40 E-value=3e+02 Score=25.17 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 369 ~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
-|+.++.........++-|...++.+|..|+.++..+..-...|..+|.-|+.
T Consensus 8 fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 8 FLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666777777777777777777666666666777776654
No 345
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.20 E-value=5.2e+02 Score=26.62 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEKSC 212 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~~~ 212 (684)
+...+...+..|+.++..+....+.
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~ 70 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDE 70 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 346
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=34.92 E-value=4.3e+02 Score=25.58 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.+|.+-+.+|+.|-.... + -..-...|+.+|+.++.....|..++.++......++..+..-
T Consensus 60 ~dLe~~l~rLeEEqqR~~----~-L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSE----E-LAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred ccHHHHHHHHHHHHHhHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888877644321 0 0033355788888888888888888888888887777766654
No 347
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.58 E-value=5e+02 Score=26.23 Aligned_cols=24 Identities=8% Similarity=0.311 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659 600 LNELKNLRKKNDDKDKMLDDLEKT 623 (684)
Q Consensus 600 ~~ei~~Lr~ql~e~e~~i~~LE~~ 623 (684)
..-|+.|..|+...+..++.|-..
T Consensus 128 ~~~Id~L~~QiE~~E~E~E~L~~~ 151 (233)
T PF04065_consen 128 KDSIDELNRQIEQLEAEIESLSSQ 151 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666655555555555543
No 348
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=34.48 E-value=13 Score=41.54 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 309 EGIIETYKKKAEELV-DLKKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 309 e~~le~~k~kleel~-~l~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
.+.+-.|+.+|++-+ -|+++-.+-+.+.+....++...|+++++-
T Consensus 407 ~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre 452 (495)
T PF12004_consen 407 QKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRRE 452 (495)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 344567777777543 344454555555556666777777777655
No 349
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.36 E-value=4.2e+02 Score=25.33 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11659 495 TLENRKANQRILELEAELK 513 (684)
Q Consensus 495 e~~~~~l~~~i~eLq~qle 513 (684)
+.........+.+|+..+.
T Consensus 50 e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 50 ENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433
No 350
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.17 E-value=60 Score=30.86 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q psy11659 330 KQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSEL 370 (684)
Q Consensus 330 ~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l 370 (684)
+.+|.+.....++.+.||.++.....++..+-.++.++.+|
T Consensus 3 eD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556667777777655433344433333333333
No 351
>KOG2010|consensus
Probab=34.00 E-value=5.8e+02 Score=26.86 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQ 399 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le 399 (684)
--+++.++..+.++..++.+.......+-.+.+.++-.+..|+
T Consensus 146 ~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq 188 (405)
T KOG2010|consen 146 IYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQ 188 (405)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555544444444444444444444444433
No 352
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=33.84 E-value=5.6e+02 Score=27.85 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 287 EARYLKDEVDILRETAEKVEKYEGIIETYKKKAEE-LVDLKKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 287 ~~~~L~deld~lr~~~~~~~k~e~~le~~k~klee-l~~l~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
.++.|+.+.+.+.+..+.-.+-..+++.|...+++ .....+.++..+.+-..+.+.-.-||++++
T Consensus 140 HVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr 205 (558)
T PF15358_consen 140 HVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLR 205 (558)
T ss_pred HHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHH
Confidence 34445555555555444433444444555544432 122223334444333334333444444433
No 353
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.77 E-value=2.5e+02 Score=24.44 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 364 KKQMSELYNQFNEETKRADKSEFENKKL--QEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 364 k~qi~~l~~~l~e~~~~~~~le~e~~~L--~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
+..+..+...+.....++..+|..+..+ ...+..++.+...+..+...+...++-+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 354
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.69 E-value=2.6e+02 Score=22.61 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy11659 239 MRRQMDALKEELFKAESARDDYRIKLEI 266 (684)
Q Consensus 239 L~~qleel~e~l~~~e~~~~~~~~~~~~ 266 (684)
+...+.+|+..++-.|..++++...+..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~ 33 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTA 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444444333333
No 355
>PRK00846 hypothetical protein; Provisional
Probab=33.37 E-value=2.7e+02 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEE 348 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEe 348 (684)
.++..|+.+.+.....+..|.+
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~ 34 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSE 34 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444444433
No 356
>PF15294 Leu_zip: Leucine zipper
Probab=33.02 E-value=5.8e+02 Score=26.49 Aligned_cols=45 Identities=29% Similarity=0.414 Sum_probs=35.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 378 TKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCC 422 (684)
Q Consensus 378 ~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~~ 422 (684)
...+.++..|+..|++++..++..-...-.+...++..+.+++..
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~ 175 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDE 175 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888899999988888888778888888888888653
No 357
>PRK04325 hypothetical protein; Provisional
Probab=32.62 E-value=2.7e+02 Score=22.59 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11659 240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMED 273 (684)
Q Consensus 240 ~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~ 273 (684)
...+.+|+..++-.|..++++...+....+++..
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~ 41 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDL 41 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444443333333333
No 358
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.33 E-value=3.5e+02 Score=26.17 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11659 386 FENKKLQEKVTSLQREKE 403 (684)
Q Consensus 386 ~e~~~L~~~l~~le~e~e 403 (684)
.++..++.+++..+.+.+
T Consensus 161 ~ei~~lk~el~~~~~~~~ 178 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIE 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444333333
No 359
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.32 E-value=2.9e+02 Score=22.88 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 383 ~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
.++..+..|-.+++.+..+.+.|..+..-|+.-|..|-
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666667777777777777664
No 360
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.00 E-value=3e+02 Score=28.27 Aligned_cols=41 Identities=5% Similarity=0.109 Sum_probs=20.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 377 ETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 377 ~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~ 417 (684)
+..+++.+..++.+|+..++.+.-+++.+...-..+...++
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555444444444443
No 361
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.16 E-value=3.5e+02 Score=23.37 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=4.4
Q ss_pred HHHHHHHHhHHH
Q psy11659 558 LQDSITQKDSEI 569 (684)
Q Consensus 558 l~~~L~~~e~el 569 (684)
+...++.++..|
T Consensus 82 l~~~~~~l~~~~ 93 (105)
T cd00632 82 LERQEEDLQEKL 93 (105)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 362
>KOG4438|consensus
Probab=31.05 E-value=7.5e+02 Score=27.20 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHHHhcCCCc-hhhhHHhHcCCHH
Q psy11659 76 LKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRK-QNYITKIMELEES 145 (684)
Q Consensus 76 l~~i~~~i~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~av~~~~~-~~~I~~I~~L~~~ 145 (684)
+..+++.+..|+.. +| +.+|..-|+ - .|+..=+.++|..|+-.|..-+.+ ..|-+-|+.++..
T Consensus 80 ~~~l~ki~~~Fl~~-i~--v~dF~~~DL---l-kPes~Rtq~~LSavvNfa~fRe~k~~~~~~~~~q~esl 143 (446)
T KOG4438|consen 80 FKLLCKILDMFLMN-IG--VLDFSFKDL---L-KPESSRTQRFLSAVVNFALFREEKMDLYRPFIQQLESL 143 (446)
T ss_pred HHHHHHHHHHHHHh-cC--cCCCchhhh---c-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666643 33 224444443 2 377788888888888888755444 5555556555443
No 363
>PRK02119 hypothetical protein; Provisional
Probab=31.04 E-value=2.9e+02 Score=22.39 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy11659 239 MRRQMDALKEELFKAESARDDYRIKL 264 (684)
Q Consensus 239 L~~qleel~e~l~~~e~~~~~~~~~~ 264 (684)
+...+.+|+..++-.|..++++...+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444433333333
No 364
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.99 E-value=8.8e+02 Score=27.98 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy11659 635 ATAFYNLALQKQRQT 649 (684)
Q Consensus 635 ~~a~y~~~~~~~~~~ 649 (684)
+-.||++++-+=...
T Consensus 297 ~~~~y~~~~p~i~~~ 311 (555)
T TIGR03545 297 FLKYYDQAEPLLNKS 311 (555)
T ss_pred HHHHHHHHhHhhccc
Confidence 457999977665443
No 365
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=30.88 E-value=3.4e+02 Score=23.20 Aligned_cols=101 Identities=13% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHH
Q psy11659 528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKD-----SEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNE 602 (684)
Q Consensus 528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e-----~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~e 602 (684)
..+...+......+.....++..+...+..+...+.... .++. -+..++......|......... +..+
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~l~~~i~~~~~~~~~--~~~~ 74 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLR----NYQRYISALEQAIQQQQQELER--LEQE 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHH----HHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_pred HHHHHHhHHhhhhhHHHHHHHHhhH---------HHHHHHH
Q psy11659 603 LKNLRKKNDDKDKMLDDLEKTLEKK---------EQQEKLI 634 (684)
Q Consensus 603 i~~Lr~ql~e~e~~i~~LE~~~~~~---------~~E~~l~ 634 (684)
+...+..+.+.-.+...++.-.++. -.|.+.+
T Consensus 75 ~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~l 115 (123)
T PF02050_consen 75 VEQAREELQEARRERKKLEKLKERRREEYQQEEERREQKEL 115 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 366
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.81 E-value=5.1e+02 Score=25.23 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHH
Q psy11659 236 NSSMRRQMDALKEEL 250 (684)
Q Consensus 236 ~~~L~~qleel~e~l 250 (684)
+.-|..--+++++-+
T Consensus 30 F~pL~~~~e~~REg~ 44 (190)
T PF05266_consen 30 FSPLQEFKEELREGM 44 (190)
T ss_pred ChhhhcCcHHhhhHH
Confidence 444444444444433
No 367
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.65 E-value=4.1e+02 Score=24.95 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 485 DDVTQQVKMKTLENRKANQRILELEAELKERV 516 (684)
Q Consensus 485 e~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~ 516 (684)
...+.....+..++..+..++.....+|..++
T Consensus 16 ~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk 47 (155)
T PF06810_consen 16 EAPKAKVDKVKEERDNLKTQLKEADKQIKDLK 47 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555553
No 368
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.56 E-value=2.8e+02 Score=22.13 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy11659 408 ERDSLKETNEEL 419 (684)
Q Consensus 408 e~~~L~e~~~eL 419 (684)
.++.|+..++.|
T Consensus 47 ~reaL~~eneql 58 (79)
T COG3074 47 QREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 369
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.41 E-value=4.7e+02 Score=24.70 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q psy11659 381 ADKSEFENKKLQEKVTSLQRE 401 (684)
Q Consensus 381 ~~~le~e~~~L~~~l~~le~e 401 (684)
+..|+.++..|..++..++.+
T Consensus 120 ~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 120 NEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 370
>KOG4571|consensus
Probab=30.40 E-value=3.6e+02 Score=28.01 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=26.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 311 IIETYKKKAE-ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 311 ~le~~k~kle-el~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
...+|++|-. +.+.+..+++.|+.+|..+..+...++.+++-+
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456654432 455666777777777777766666666665554
No 371
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.34 E-value=5.5e+02 Score=25.39 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC 421 (684)
Q Consensus 383 ~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~~ 421 (684)
.+-.+|..|+..+..+-.+...|...+..|+.....|..
T Consensus 160 ~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 160 SIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777766676666677666666643
No 372
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=30.13 E-value=5.6e+02 Score=25.49 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy11659 366 QMSELYNQFNEETKRADKSEFENKKLQEKVTSLQ 399 (684)
Q Consensus 366 qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le 399 (684)
.+..|+.++.+...+.-.++..+..|..++..+.
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444444433
No 373
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.07 E-value=3.6e+02 Score=23.16 Aligned_cols=83 Identities=11% Similarity=0.194 Sum_probs=41.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHH
Q psy11659 480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQE---EHLEQGKLIE 556 (684)
Q Consensus 480 L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~---q~~~~~~~~~ 556 (684)
+.++++.......-|+.-++....+...+..-...+.. .+ +.+......+++ +++.....+.
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~--------~~-------~~l~~k~~~l~~~l~~Id~Ie~~V~ 76 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEK--------NL-------EDLNQKYEELQPYLQQIDQIEEQVT 76 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666666554444321 11 222222222222 2333345666
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q psy11659 557 KLQDSITQKDSEIQDYEEKNR 577 (684)
Q Consensus 557 ~l~~~L~~~e~el~~~e~r~k 577 (684)
.|+.....++.=.+.+|.+|+
T Consensus 77 ~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 77 ELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 666666666555555555554
No 374
>KOG3478|consensus
Probab=29.77 E-value=3.9e+02 Score=23.50 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=13.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy11659 379 KRADKSEFENKKLQEKVTSLQREKEK 404 (684)
Q Consensus 379 ~~~~~le~e~~~L~~~l~~le~e~e~ 404 (684)
.+++=+..+++++...+.+.+++...
T Consensus 76 kRlefI~~Eikr~e~~i~d~q~e~~k 101 (120)
T KOG3478|consen 76 KRLEFISKEIKRLENQIRDSQEEFEK 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554433
No 375
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.74 E-value=2.8e+02 Score=21.80 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11659 200 DMQVSMLQEEKSCLVEEKRRLEERFQEN 227 (684)
Q Consensus 200 ~~q~~~L~~e~~~l~~E~~~l~~~~~~~ 227 (684)
+..+..|..+...+..++..+..+++..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~ 30 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3445556666666777777777777643
No 376
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.34 E-value=2.6e+02 Score=21.44 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 377 ETKRADKSEFENKKLQEKVTSLQREKEKLI 406 (684)
Q Consensus 377 ~~~~~~~le~e~~~L~~~l~~le~e~e~l~ 406 (684)
+..+++.|..+...++..+.....|-.|..
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555444444444433
No 377
>PLN02320 seryl-tRNA synthetase
Probab=28.69 E-value=3.3e+02 Score=30.83 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11659 286 GEARYLKDEVDILRET 301 (684)
Q Consensus 286 ~~~~~L~deld~lr~~ 301 (684)
.+.+.+..+++.++..
T Consensus 100 ~~~r~~~~~~~~lr~e 115 (502)
T PLN02320 100 ENMLALQKEVERLRAE 115 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555443
No 378
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=28.41 E-value=3.4e+02 Score=27.26 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 244 DALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301 (684)
Q Consensus 244 eel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~ 301 (684)
.-+.+-++-+|..+..++..+..|..++..|+..+..+. ..++..++.++-||+-
T Consensus 60 h~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r---~~~~~~~~~~eglrep 114 (389)
T PF06216_consen 60 HIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQR---QQIREMREIIEGLREP 114 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhh
Confidence 344556667777778888888888888888888887666 5667777777777663
No 379
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=28.29 E-value=1.1e+03 Score=28.18 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11659 258 DDYRIKLEIQSKQMEDLELKLN 279 (684)
Q Consensus 258 ~~~~~~~~~le~el~~l~~k~~ 279 (684)
+.++.+.++|-+.+...+.++.
T Consensus 451 e~lq~kneellk~~e~q~~Enk 472 (861)
T PF15254_consen 451 ELLQSKNEELLKVIENQKEENK 472 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 4445555555555444444443
No 380
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=28.08 E-value=5.5e+02 Score=24.73 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 190 DQMAQRCMELDMQVSMLQEEKSCLVEEKRRLE 221 (684)
Q Consensus 190 d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~ 221 (684)
..|..+++.|+-....-......|..+....+
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~LS~et~~yk 38 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQLSRETSHYK 38 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Confidence 34455555554433333333444444444433
No 381
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=28.06 E-value=70 Score=33.80 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=12.1
Q ss_pred HHHHHHHhHHhhhhhHHHHHH
Q psy11659 602 ELKNLRKKNDDKDKMLDDLEK 622 (684)
Q Consensus 602 ei~~Lr~ql~e~e~~i~~LE~ 622 (684)
.+....-++.+.+.|+..||.
T Consensus 134 dVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 134 DVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhcchHhhHHHHHHHHhc
Confidence 345555566666666666654
No 382
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=27.91 E-value=8.2e+02 Score=26.65 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy11659 449 TELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr 466 (684)
..+-..+..|.+....|.
T Consensus 242 ~~l~~~l~~L~~~lslL~ 259 (388)
T PF04912_consen 242 SPLLPALNELERQLSLLD 259 (388)
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 445666777777666664
No 383
>KOG0288|consensus
Probab=27.78 E-value=8.4e+02 Score=26.73 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=13.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 252 KAESARDDYRIKLEIQSKQMEDLELKLN 279 (684)
Q Consensus 252 ~~e~~~~~~~~~~~~le~el~~l~~k~~ 279 (684)
.++++.+..+.++...+.++.+|+.++.
T Consensus 38 ~~~a~~~ai~a~~~~~E~~l~~Lq~e~~ 65 (459)
T KOG0288|consen 38 ILRAESRAIKAKLQEKELELNRLQEENT 65 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555544443
No 384
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=27.69 E-value=48 Score=34.28 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHhhhhhcc--cCCCCCcchhhh
Q psy11659 637 AFYNLALQKQRQTADNRLASI--TFSQQPQSFLTK 669 (684)
Q Consensus 637 a~y~~~~~~~~~~~~~r~~~~--~~~~~~~sfl~~ 669 (684)
||..|--+..|.++-+|.+-+ |.+|+|+|||||
T Consensus 192 ~fnrmieqierva~rsr~p~ll~gptgagksflar 226 (531)
T COG4650 192 HFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLAR 226 (531)
T ss_pred HHHHHHHHHHHHHhhccCCeEeecCCCcchhHHHH
Confidence 677777788888888884221 116889999998
No 385
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.69 E-value=8.8e+02 Score=26.97 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEKSC 212 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~~~ 212 (684)
+.+.+..++..+..++..|..++..
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554443
No 386
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=27.67 E-value=62 Score=27.51 Aligned_cols=74 Identities=22% Similarity=0.391 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhcccccCccccchhHHhhc----CCHH-
Q psy11659 39 AMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVEN----IDAK- 113 (684)
Q Consensus 39 ~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~~~~~~~~~pd~~~ia~~----~d~~- 113 (684)
.+.+|...+.|+.|..+ .-+.||+.|.+.|.+ |. .||+..|... +...
T Consensus 22 ~~~~i~~~L~~e~F~~~-------------------~h~~If~~i~~l~~~--~~------~id~~~v~~~l~~~~~~~~ 74 (103)
T PF00772_consen 22 AIDEIIDKLSPEDFYDP-------------------AHRRIFEAILELYRE--GE------PIDPITVAEELSDEGKLKD 74 (103)
T ss_dssp HHHHHHTT-SGGGSSSH-------------------HHHHHHHHHHHHHHT--TS--------SHHHHHHHHHHTTTCCH
T ss_pred HHHHHhccCCHHHhCCH-------------------HHHHHHHHHHHHHHc--CC------CCCHHHHHHHHHHCCCccc
Confidence 44556666666666542 347889999999975 32 2555555443 2211
Q ss_pred --HHHHHHHHHHHHHhcCCCchhhhHHhH
Q psy11659 114 --ELARLMQLILGCAINCNRKQNYITKIM 140 (684)
Q Consensus 114 --el~~ll~lvl~~av~~~~~~~~I~~I~ 140 (684)
...-|.. ++..+..+.+=..|+..|.
T Consensus 75 ~~~~~~l~~-l~~~~~~~~~~~~y~~~i~ 102 (103)
T PF00772_consen 75 IGGIEYLME-LINNAPSIANLEDYAKIIK 102 (103)
T ss_dssp HTHHHHHHH-HHHHSSSSSTHHHHHHHHH
T ss_pred cCHHHHHHH-HHHhCCCHHHHHHHHHHhh
Confidence 1233333 3344455567788887764
No 387
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.40 E-value=4.4e+02 Score=23.33 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy11659 323 VDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREK 402 (684)
Q Consensus 323 ~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~ 402 (684)
.++......+......+...-..|.+....+ ..-+..........................++..+...+..+..+.
T Consensus 21 ~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f---~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~ 97 (126)
T PF13863_consen 21 EEIERREEQLKQREEELEKKEQELEEDVIKF---DKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEI 97 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy11659 403 EKLIVERDSLK 413 (684)
Q Consensus 403 e~l~~e~~~L~ 413 (684)
..+...+..+.
T Consensus 98 ~k~e~~l~~~~ 108 (126)
T PF13863_consen 98 SKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHH
No 388
>KOG3647|consensus
Probab=27.39 E-value=6.9e+02 Score=25.62 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11659 502 NQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIE 581 (684)
Q Consensus 502 ~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e 581 (684)
..++..+..++....+. ..+|-.++.....||++.+++++.|++ -.-....+....+.+++ ..|..||.
T Consensus 118 ~~~~q~~~~~Lnnvasd-ea~L~~Kierrk~ElEr~rkRle~Lqs-------iRP~~MdEyE~~EeeLq---kly~~Y~l 186 (338)
T KOG3647|consen 118 QVRLQSSRAQLNNVASD-EAALGSKIERRKAELERTRKRLEALQS-------IRPAHMDEYEDCEEELQ---KLYQRYFL 186 (338)
T ss_pred HHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHHH---HHHHHHHH
Confidence 33444444444443322 335555566666777788877777663 23334555666666665 45555655
Q ss_pred HH
Q psy11659 582 KA 583 (684)
Q Consensus 582 ~a 583 (684)
.-
T Consensus 187 ~f 188 (338)
T KOG3647|consen 187 RF 188 (338)
T ss_pred HH
Confidence 44
No 389
>PRK04406 hypothetical protein; Provisional
Probab=27.37 E-value=3.4e+02 Score=22.10 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 390 KLQEKVTSLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 390 ~L~~~l~~le~e~e~l~~e~~~L~e~~~ 417 (684)
.|..-+..-+.+.+.+..++..|..++.
T Consensus 29 ~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 29 ELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 390
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=27.26 E-value=4.6e+02 Score=23.53 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHhhH
Q psy11659 576 NRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK 627 (684)
Q Consensus 576 ~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~~~ 627 (684)
|..|+......|......... +...+...+..+.+.......+|.-.++.
T Consensus 66 ~~~f~~~l~~~i~~q~~~l~~--~~~~~e~~r~~l~~a~~~~k~lekL~ek~ 115 (141)
T TIGR02473 66 YQRFIRQLDQRIQQQQQELAL--LQQEVEAKRERLLEARRELKALEKLKEKK 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544443332 45567788888888888888787776654
No 391
>KOG3809|consensus
Probab=27.23 E-value=8.7e+02 Score=26.74 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=23.3
Q ss_pred hHHhhcCCHHHHHHHHHHHHHHHhcCCCchhhhH
Q psy11659 104 HKIVENIDAKELARLMQLILGCAINCNRKQNYIT 137 (684)
Q Consensus 104 ~~ia~~~d~~el~~ll~lvl~~av~~~~~~~~I~ 137 (684)
..|.---+|++...||+.+-.||.+--.....|.
T Consensus 93 akIVaG~epE~TNelLQ~~g~~a~~~ls~dsiVd 126 (583)
T KOG3809|consen 93 AKIVAGKEPEETNELLQMLGTNATSFLSRDSIVD 126 (583)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 4444445899999999999888876544444443
No 392
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.80 E-value=3.7e+02 Score=22.23 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy11659 326 KKQVKQLES 334 (684)
Q Consensus 326 ~~~~~~Le~ 334 (684)
+..+-+|+.
T Consensus 45 r~~v~eLE~ 53 (79)
T PF08581_consen 45 RQKVYELEQ 53 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 393
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=26.79 E-value=3.5e+02 Score=23.46 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=18.2
Q ss_pred hhHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKL-DDVTQQVKMKTLENRKANQRILELEAELKE 514 (684)
Q Consensus 475 ~~l~~L~~~L-e~~~~~~~~Le~~~~~l~~~i~eLq~qle~ 514 (684)
.++.+|...| ++++..+..-..+...+..+...|..++.+
T Consensus 22 ~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e 62 (100)
T PF06428_consen 22 SELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKE 62 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554443 555555544444444444444444443333
No 394
>PRK11519 tyrosine kinase; Provisional
Probab=26.76 E-value=1.1e+03 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy11659 238 SMRRQMDALKEELFKAESARDDYRIK 263 (684)
Q Consensus 238 ~L~~qleel~e~l~~~e~~~~~~~~~ 263 (684)
-+.+++..++.++...|.++.+++.+
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444444443
No 395
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.24 E-value=2.5e+02 Score=24.52 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHH
Q psy11659 236 NSSMRRQMDALKEEL 250 (684)
Q Consensus 236 ~~~L~~qleel~e~l 250 (684)
+..++.++.+++.++
T Consensus 29 ~~~l~~q~~~~~~e~ 43 (105)
T PRK00888 29 YWRVNDQVAAQQQTN 43 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 396
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.88 E-value=5.6e+02 Score=24.05 Aligned_cols=29 Identities=38% Similarity=0.533 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 309 EGIIETYKKKAEELVDLKKQVKQLESKNL 337 (684)
Q Consensus 309 e~~le~~k~kleel~~l~~~~~~Le~~~~ 337 (684)
..++..++..-.+..+|+.++..|+..+.
T Consensus 40 d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 40 DKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555544
No 397
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.61 E-value=3.9e+02 Score=22.15 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Q psy11659 369 ELYNQFNEETKRADKSEFENKKLQ 392 (684)
Q Consensus 369 ~l~~~l~e~~~~~~~le~e~~~L~ 392 (684)
.|+..+..+..+++....++.+|.
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~ 50 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLE 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 398
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=25.20 E-value=8.2e+02 Score=25.75 Aligned_cols=130 Identities=11% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHhHHH
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER---VTEDAAGMK 524 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l---~~~~~~~lk 524 (684)
++++++++..+-. -.|+ ..+..+...+...++.+.+++.++..+...+..++..+..- ......+-=
T Consensus 57 ld~~~~kl~~Ms~--~ql~--------~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~ 126 (301)
T PF06120_consen 57 LDELKEKLKEMSS--TQLR--------ANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHL 126 (301)
T ss_pred hHHHHHHHHhcCH--HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11659 525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLL 590 (684)
Q Consensus 525 ~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l 590 (684)
..+.++...+......+...+.++.....+....+..|........ .-.+....+...++..|
T Consensus 127 ~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~---~~ir~~~~e~~~~~~sl 189 (301)
T PF06120_consen 127 MSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRI---DLIRQKAAEQAGAYNSL 189 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
No 399
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=25.19 E-value=75 Score=25.33 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=26.3
Q ss_pred HHHHHHhhcccccCccccchhHHhhc-CCHHHHHHHHHHHHHHHhcCCCchhhhHHhH
Q psy11659 84 VDYFQEYFDQALGEFGKVDVHKIVEN-IDAKELARLMQLILGCAINCNRKQNYITKIM 140 (684)
Q Consensus 84 ~~y~~~~l~~~~~~~~~pd~~~ia~~-~d~~el~~ll~lvl~~av~~~~~~~~I~~I~ 140 (684)
..||+..+|.++++...-.+...... +.+ ..-+..++-.|......+-.||..|+
T Consensus 2 ~~~~e~~~gr~ls~~e~~~i~~~~~~~~~~--~evI~~ai~~a~~~~~~~~~Yi~~Il 57 (73)
T TIGR01446 2 YDFFEENFGRMLSPFEMEDLKYWLDEFGNS--PELIKEALKEAVSNNKANYKYIDAIL 57 (73)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56787777765543222222222121 111 12233333345545555567998886
No 400
>KOG2264|consensus
Probab=24.66 E-value=4.5e+02 Score=29.87 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy11659 409 RDSLKETNEEL 419 (684)
Q Consensus 409 ~~~L~e~~~eL 419 (684)
++.-+...+|+
T Consensus 137 ieqaq~~~~El 147 (907)
T KOG2264|consen 137 IEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHH
Confidence 33333334444
No 401
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=24.57 E-value=5.7e+02 Score=23.73 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHh
Q psy11659 600 LNELKNLRKKNDDKDKMLDDLEKTLE 625 (684)
Q Consensus 600 ~~ei~~Lr~ql~e~e~~i~~LE~~~~ 625 (684)
...|..|++-+.....+|..||....
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~i~ 128 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQDID 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888888876643
No 402
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.40 E-value=4e+02 Score=21.91 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHH
Q psy11659 556 EKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDL 620 (684)
Q Consensus 556 ~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~L 620 (684)
..|...|.+++.|+..+.-.|....+..+.+-.+.....+. .+..++..|-..+..+...|..|
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~-~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRR-DLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHH-HHHHHHHHHHHHHHHHHHHHHHH
No 403
>PRK14011 prefoldin subunit alpha; Provisional
Probab=24.35 E-value=5.8e+02 Score=23.69 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Q psy11659 537 LKEQINHQQEEHLEQGKLIEKLQDSITQKDSEI 569 (684)
Q Consensus 537 ~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el 569 (684)
...++++++...+.+...+.++...+..+..++
T Consensus 93 ~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 93 FKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333344444444444444443
No 404
>PRK12704 phosphodiesterase; Provisional
Probab=24.21 E-value=1.1e+03 Score=26.91 Aligned_cols=33 Identities=12% Similarity=0.365 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHhhH-HH-HHHHHHHHHHHHHHH
Q psy11659 612 DKDKMLDDLEKTLEKK-EQ-QEKLIATAFYNLALQ 644 (684)
Q Consensus 612 e~e~~i~~LE~~~~~~-~~-E~~l~~~a~y~~~~~ 644 (684)
+....|...|.+.+.. +. =.++|++|--+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~~ 204 (520)
T PRK12704 170 EAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAAD 204 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 3344555555555443 33 344555555444433
No 405
>PF14992 TMCO5: TMCO5 family
Probab=24.05 E-value=8.3e+02 Score=25.38 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11659 386 FENKKLQEKVTSLQREK 402 (684)
Q Consensus 386 ~e~~~L~~~l~~le~e~ 402 (684)
.+++.+++.+..++.++
T Consensus 151 ~~i~klkE~L~rmE~ek 167 (280)
T PF14992_consen 151 NEIKKLKEKLRRMEEEK 167 (280)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555444443
No 406
>PF08166 NUC202: NUC202 domain; InterPro: IPR012980 This domain is found in a novel family of nucleolar proteins [].
Probab=23.90 E-value=1e+02 Score=24.01 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcC
Q psy11659 9 SELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWF 52 (684)
Q Consensus 9 ~~~~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f 52 (684)
..+..-|..|++++.-....--.+-.+.-.++..++|+|-|...
T Consensus 7 ~rlYr~L~~wv~vCG~~~~~Lq~ss~~~EaLl~~Li~d~~P~~d 50 (61)
T PF08166_consen 7 CRLYRLLLAWVLVCGASSGVLQVSSFCSEALLTHLIHDRTPPAD 50 (61)
T ss_pred HHHHHHHHHHHHHcCCccCcccccchhHHHHHHHHcCCCCCChh
Confidence 44778899999998543333233444445566678888887543
No 407
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.56 E-value=1.2e+03 Score=26.94 Aligned_cols=188 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhh-hcCCCccccc
Q psy11659 176 QNLVAELQTVIDARDQMAQRCMELDMQVSMLQE-------------------EKSCLVEEKRRLEERFQ-ENFVEPTNKG 235 (684)
Q Consensus 176 ~~~~~~l~~~~~e~d~l~~~~~el~~q~~~L~~-------------------e~~~l~~E~~~l~~~~~-~~~~~~~~~~ 235 (684)
+....++..+.....+..++.+-|.=|+.+|.. ...++..-....-..++ +.++.+....
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~ 246 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSL 246 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 236 NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETY 315 (684)
Q Consensus 236 ~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~ 315 (684)
+......+..+.+--.++......+...+.+++.-..+++...+.+.-...........+..++. -..||...++..
T Consensus 247 l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~---l~RKY~~~~~~l 323 (557)
T COG0497 247 LGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKS---LARKYGVTIEDL 323 (557)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---HHHHhCCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy11659 316 KKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSE 369 (684)
Q Consensus 316 k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~ 369 (684)
-.....+..--..+...+.....+..+...+..++... -..+...+++...
T Consensus 324 ~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~---A~~Ls~~R~~~A~ 374 (557)
T COG0497 324 LEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEA---AEALSAIRKKAAK 374 (557)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
No 408
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=23.55 E-value=4.8e+02 Score=22.46 Aligned_cols=67 Identities=22% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH--------------------------HHHHHHH
Q psy11659 320 EELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ--------------------------MSELYNQ 373 (684)
Q Consensus 320 eel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~q--------------------------i~~l~~~ 373 (684)
++..+|+.++.-.++.-.-+.+.+..++++-+.+ ..++..|+.. +...+.+
T Consensus 1 E~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l---~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~q 77 (96)
T PF11365_consen 1 EDSAELRRQLQFVEEEAELLRRKLSELEDENKQL---TEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQ 77 (96)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhHHHHH
Q psy11659 374 FNEETKRADKSEFENK 389 (684)
Q Consensus 374 l~e~~~~~~~le~e~~ 389 (684)
++++..++-+++.++.
T Consensus 78 i~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 78 INELSGKVMELQYENR 93 (96)
T ss_pred HHHHhhHHHHHhhccc
No 409
>KOG0046|consensus
Probab=23.49 E-value=1.2e+02 Score=33.85 Aligned_cols=119 Identities=12% Similarity=0.165 Sum_probs=70.4
Q ss_pred HhHHHHHHHHhhcC-CCC------CCC--C---ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHH
Q psy11659 10 ELCNILLKWLQTFT-LVA------PHQ--S---LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLK 77 (684)
Q Consensus 10 ~~~~~l~~W~~tf~-~~~------~~~--~---~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~ 77 (684)
+--.+++.|||+.- -++ |.. + |+.+-||++|.++++.==|...++..++. ...-+ +|. +..|+.
T Consensus 119 eEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~--kk~Ln-p~~-~~EN~~ 194 (627)
T KOG0046|consen 119 EEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINT--KKKLN-PFE-RNENLN 194 (627)
T ss_pred HHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhcc--CCcCC-hhh-hccchh
Confidence 34678999999872 111 111 1 67788999999999999999998864331 12333 563 335654
Q ss_pred HHHHHHHHHHHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHHHhcCCCchhhhH
Q psy11659 78 KINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYIT 137 (684)
Q Consensus 78 ~i~~~i~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~av~~~~~~~~I~ 137 (684)
-.+.+ -..+||.+......|+..--.|-=..-|-.++..-|.+-+.+.+....+.
T Consensus 195 l~lnS-----AkAiGc~VvNIga~Dl~eGrphLVLGLiwQiIkiglladi~l~~~p~L~~ 249 (627)
T KOG0046|consen 195 LALNS-----AKAIGCTVVNIGAQDLAEGRPHLVLGLIWQIIKIGLLADINLKKNPQLVR 249 (627)
T ss_pred hHHhh-----cccccceEEecCchhhhcCCceeeHHHHHHHHHHHHhhhcccccCHHHHH
Confidence 44332 23456666555544432211111223456677777777788888776554
No 410
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=23.22 E-value=7.9e+02 Score=24.85 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVT 517 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~ 517 (684)
++++.++.+|.+..-.|+++.-... .-..+|+.-++++..-..+|...+..+.++..+..-.+.-+++
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~-~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKa 79 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQG-SAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKA 79 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHH
Confidence 7889999999998888876653322 2224567777777666666666555555555444444444433
No 411
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=23.09 E-value=4.2e+02 Score=21.61 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLD 485 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le 485 (684)
-|....|.+|..||=.|+ -+|.-|...+.
T Consensus 3 rEqe~~i~~L~KENF~LK--------LrI~fLee~l~ 31 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLK--------LRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHhhhhHH--------HHHHHHHHHHH
Confidence 345566777777777776 55555555444
No 412
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.85 E-value=6.8e+02 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 267 QSKQMEDLELKLNSLEETAGEARYL 291 (684)
Q Consensus 267 le~el~~l~~k~~~L~~~a~~~~~L 291 (684)
++.++..+..+++.|.......+.|
T Consensus 125 L~~eI~~L~~~i~~le~~~~~~k~L 149 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEEIQSKSKTL 149 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333333333
No 413
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.84 E-value=7.1e+02 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 195 RCMELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 195 ~~~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
.+..+..++..+......+...++..
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 414
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.68 E-value=4.3e+02 Score=21.56 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659 489 QQVKMKTLENRKANQRILELEAELKERVT 517 (684)
Q Consensus 489 ~~~~~Le~~~~~l~~~i~eLq~qle~l~~ 517 (684)
..+..|.+++-.+.-+|--|...+....+
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~ 35 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGP 35 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhccc
Confidence 44566667777777777777777765543
No 415
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.49 E-value=2.9e+02 Score=30.02 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy11659 449 TELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr 466 (684)
...++.|.+..++...+.
T Consensus 259 f~~KE~IL~aAR~~~~~~ 276 (370)
T PF02994_consen 259 FQDKEKILKAAREKGQLT 276 (370)
T ss_dssp HHHHHHHHHHHHHHS-EE
T ss_pred cccHHHHHHHHHhcCcee
Confidence 557888888888876663
No 416
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=22.48 E-value=1.6e+02 Score=22.88 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 180 AELQTVIDARDQMAQRCMELDMQVSML 206 (684)
Q Consensus 180 ~~l~~~~~e~d~l~~~~~el~~q~~~L 206 (684)
.++..++.||..|..++..++.++.-+
T Consensus 3 ~ELr~VL~ERNeLK~~v~~leEEL~~y 29 (60)
T PF11461_consen 3 QELREVLQERNELKARVFLLEEELAYY 29 (60)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999988888776544443
No 417
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=22.17 E-value=1.1e+02 Score=23.78 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHhhcC-CCCCC
Q psy11659 9 SELCNILLKWLQTFT-LVAPH 28 (684)
Q Consensus 9 ~~~~~~l~~W~~tf~-~~~~~ 28 (684)
+.+..+|+.|+.... .+.|+
T Consensus 5 ~~~E~~L~~wi~~~~~~g~~i 25 (66)
T smart00674 5 ALLEKALYEWILRQEALGIPI 25 (66)
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 457889999999864 34455
No 418
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.11 E-value=6.2e+02 Score=23.22 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEE 349 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEee 349 (684)
...+..+...|..+.+.+..++.+
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~ 56 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPE 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHhcccchH
Confidence 333344444444444444333333
No 419
>KOG4196|consensus
Probab=22.09 E-value=3.1e+02 Score=24.83 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy11659 258 DDYRIKLEIQ 267 (684)
Q Consensus 258 ~~~~~~~~~l 267 (684)
+-|+.+++.+
T Consensus 105 da~k~k~e~l 114 (135)
T KOG4196|consen 105 DAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 420
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.94 E-value=7.1e+02 Score=23.85 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 291 LKDEVDILRETAEKVEKYEGIIETYKK 317 (684)
Q Consensus 291 L~deld~lr~~~~~~~k~e~~le~~k~ 317 (684)
|+++++.+...+..++........++.
T Consensus 125 L~~eI~~L~~~i~~le~~~~~~k~Lrn 151 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEEIQSKSKTLRN 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333333333333333333333
No 421
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.89 E-value=1.5e+02 Score=28.23 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11659 284 TAGEARYLKDEVDILRE 300 (684)
Q Consensus 284 ~a~~~~~L~deld~lr~ 300 (684)
+..+++.|+||+..|+.
T Consensus 29 L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHCH------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455666666666655
No 422
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=21.45 E-value=6.8e+02 Score=23.42 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy11659 340 IQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK-LIVERDSLKETNEE 418 (684)
Q Consensus 340 ~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~-l~~e~~~L~e~~~e 418 (684)
+.....++.++-+. ...++..+++++.....+..+...++.+...+..+...+..+...... .....+.+.+.+.+
T Consensus 50 mer~~~ieNdlg~~---~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~e 126 (157)
T COG3352 50 MERMTDIENDLGKV---KIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNE 126 (157)
T ss_pred HHHHHHHHhhcccc---cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence 34444455444433 555555556666665555555555555554444444444443333221 12235556666666
Q ss_pred HHH
Q psy11659 419 LKC 421 (684)
Q Consensus 419 L~~ 421 (684)
+..
T Consensus 127 l~~ 129 (157)
T COG3352 127 LKM 129 (157)
T ss_pred HHH
Confidence 543
No 423
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.43 E-value=2.1e+02 Score=20.86 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEKSCLVEE 216 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~~~l~~E 216 (684)
--|.+.+++.+++.++.+|+..+..|...
T Consensus 13 ~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 13 HYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888999999999988887776544
No 424
>PRK00846 hypothetical protein; Provisional
Probab=21.39 E-value=4.7e+02 Score=21.53 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 240 RRQMDALKEELFKA 253 (684)
Q Consensus 240 ~~qleel~e~l~~~ 253 (684)
...+++|+..++-.
T Consensus 12 e~Ri~~LE~rlAfQ 25 (77)
T PRK00846 12 EARLVELETRLSFQ 25 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 425
>KOG4572|consensus
Probab=21.22 E-value=1.5e+03 Score=27.26 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 379 KRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 379 ~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~ 417 (684)
.....++.++..++..++.+.++.+.+..++..+...|-
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIi 1033 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEII 1033 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888887777777766665544
No 426
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.73 E-value=5.5e+02 Score=25.13 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy11659 236 NSSMRRQMDALKEELFKA 253 (684)
Q Consensus 236 ~~~L~~qleel~e~l~~~ 253 (684)
...|+.+|.+|+..+.+.
T Consensus 98 evrLkrELa~Le~~l~~~ 115 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKV 115 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666543
No 427
>KOG0239|consensus
Probab=20.42 E-value=1.5e+03 Score=26.90 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 258 DDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNL 337 (684)
Q Consensus 258 ~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~ 337 (684)
.+.......++............+.....+...|.+.+-.+.........+.......+++ +..++..+..+.....
T Consensus 182 ~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~---i~~l~~~l~~l~~~~~ 258 (670)
T KOG0239|consen 182 SDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKK---IQALQQELEELKAELK 258 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHH
Q psy11659 338 SYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEET---KRADKSEFENKKLQEKV 395 (684)
Q Consensus 338 ~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~---~~~~~le~e~~~L~~~l 395 (684)
.+......+..+.... ...+..+...+.++...+.+.. ....+|-.++..|+..+
T Consensus 259 ~l~~~~~~~~~~~~~~---~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 259 ELNDQVSLLTREVQEA---LKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
No 428
>PRK14127 cell division protein GpsB; Provisional
Probab=20.34 E-value=3.9e+02 Score=23.54 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKT-------------LENRKANQRILELEAEL 512 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le-------------~~~~~l~~~i~eLq~ql 512 (684)
+.++-..+..+..||..|+ .++..|...+.+...+....+ ..+-.+-+++..|...+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk--------~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQ--------QENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
No 429
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.29 E-value=6e+02 Score=26.09 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11659 540 QINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYI 580 (684)
Q Consensus 540 ~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~ 580 (684)
.+-+|+.+++++..++..|...+.....++..+..+-+...
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555544444433
Done!