Query psy11659
Match_columns 684
No_of_seqs 464 out of 1406
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 15:38:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wix_A HOOK homolog 1, RSGI RU 100.0 2.4E-47 8.2E-52 358.3 15.6 159 3-162 2-160 (164)
2 1i84_S Smooth muscle myosin he 98.5 1.4E-07 4.7E-12 115.5 10.3 43 234-276 857-899 (1184)
3 1i84_S Smooth muscle myosin he 98.5 2.3E-07 7.8E-12 113.6 9.7 22 492-513 1112-1133(1184)
4 2v71_A Nuclear distribution pr 97.3 0.093 3.2E-06 49.2 23.4 25 328-352 131-155 (189)
5 2ee7_A Sperm flagellar protein 97.2 0.00085 2.9E-08 59.3 8.2 90 5-108 11-101 (127)
6 3na7_A HP0958; flagellar bioge 97.2 0.041 1.4E-06 55.1 21.7 13 288-300 62-74 (256)
7 2v71_A Nuclear distribution pr 97.1 0.18 6.2E-06 47.3 23.5 13 268-280 48-60 (189)
8 3o0z_A RHO-associated protein 96.9 0.24 8.3E-06 45.3 20.7 44 363-406 95-138 (168)
9 3na7_A HP0958; flagellar bioge 96.7 0.25 8.4E-06 49.4 22.4 16 328-343 105-120 (256)
10 3o0z_A RHO-associated protein 96.6 0.43 1.5E-05 43.6 22.3 16 235-250 7-22 (168)
11 2ocy_A RAB guanine nucleotide 96.4 0.4 1.4E-05 43.4 18.7 134 483-626 7-140 (154)
12 2qjz_A Microtubule-associated 96.3 0.006 2.1E-07 53.5 6.1 94 13-122 8-101 (123)
13 3vkg_A Dynein heavy chain, cyt 96.0 2.6 9E-05 55.9 31.1 43 527-569 2065-2107(3245)
14 1wyo_A Protein EB3, microtubul 96.0 0.012 4.1E-07 53.8 6.9 107 9-131 21-128 (159)
15 3vkg_A Dynein heavy chain, cyt 95.6 4 0.00014 54.3 30.2 50 359-408 2057-2106(3245)
16 2dfs_A Myosin-5A; myosin-V, in 95.5 0.23 7.7E-06 59.8 17.3 20 393-412 1023-1042(1080)
17 2dfs_A Myosin-5A; myosin-V, in 95.5 0.46 1.6E-05 57.1 19.7 23 379-401 1023-1045(1080)
18 3u1c_A Tropomyosin alpha-1 cha 95.0 1.4 4.7E-05 37.1 15.9 54 365-418 44-97 (101)
19 2yrn_A Neuron navigator 2 isof 95.0 0.046 1.6E-06 48.6 6.8 95 9-119 17-116 (129)
20 2vzc_A Alpha-parvin; membrane, 94.5 0.22 7.5E-06 44.3 10.0 94 12-119 24-120 (131)
21 2r8u_A Microtubule-associated 94.5 0.075 2.6E-06 52.7 7.5 104 12-131 17-121 (268)
22 2eqb_B RAB guanine nucleotide 94.4 1.8 6E-05 35.8 14.4 59 448-514 7-65 (97)
23 3u59_A Tropomyosin beta chain; 94.2 2.2 7.4E-05 35.9 15.6 84 332-418 14-97 (101)
24 3u1c_A Tropomyosin alpha-1 cha 94.2 2.2 7.4E-05 35.9 15.0 95 448-558 4-98 (101)
25 2efr_A General control protein 93.8 3.7 0.00013 37.2 21.3 77 326-405 41-117 (155)
26 2v66_B Nuclear distribution pr 93.7 2.9 0.0001 35.5 16.3 24 329-352 79-102 (111)
27 1wjo_A T-plastin; CH domain, a 93.6 0.065 2.2E-06 47.0 4.6 73 13-95 10-88 (124)
28 2fxo_A Myosin heavy chain, car 93.5 3.7 0.00013 36.1 19.0 27 394-420 98-124 (129)
29 3u59_A Tropomyosin beta chain; 93.3 3 0.0001 35.0 14.5 93 448-556 4-96 (101)
30 2qjx_A Protein BIM1; calponin 92.9 0.39 1.3E-05 42.1 8.4 94 12-122 12-105 (127)
31 2fxo_A Myosin heavy chain, car 92.8 4.7 0.00016 35.4 18.5 14 287-300 14-27 (129)
32 2e7s_A RAB guanine nucleotide 92.8 0.28 9.6E-06 43.1 7.3 77 544-625 51-127 (135)
33 2d89_A EHBP1 protein; all alph 92.7 0.8 2.7E-05 39.8 10.2 85 12-115 11-101 (119)
34 2eqb_B RAB guanine nucleotide 92.5 3.2 0.00011 34.2 12.8 62 548-614 35-96 (97)
35 1wyl_A NEDD9 interacting prote 92.1 1.2 4.1E-05 38.5 10.5 83 12-112 9-95 (116)
36 4abo_I MAL3, microtubule integ 92.0 0.48 1.6E-05 42.3 7.9 102 13-131 9-111 (145)
37 1sh5_A Plectin 1, PLTN, PCN; a 91.7 0.67 2.3E-05 45.8 9.7 90 12-119 135-229 (245)
38 2d87_A Smoothelin splice isofo 91.5 1.2 3.9E-05 39.3 9.9 87 11-115 8-100 (128)
39 2wa7_A Filamin-B; disease muta 91.5 0.75 2.6E-05 45.5 9.7 92 12-120 145-238 (245)
40 3swk_A Vimentin; cytoskeleton, 91.4 2.5 8.6E-05 34.3 11.1 61 360-420 23-83 (86)
41 1aoa_A T-fimbrin; actin-bindin 91.2 0.62 2.1E-05 46.9 9.0 89 12-112 170-263 (275)
42 2efr_A General control protein 91.2 8.4 0.00029 34.8 23.6 8 288-295 44-51 (155)
43 1bkr_A Spectrin beta chain; fi 91.0 1.8 6.1E-05 36.9 10.4 69 12-94 5-77 (109)
44 3hoc_A Filamin-A; calponin hom 90.5 0.84 2.9E-05 45.8 9.1 102 13-129 50-155 (272)
45 1sjj_A Actinin; 3-helix bundle 90.4 31 0.0011 40.2 45.9 90 12-119 123-218 (863)
46 3f7p_A Plectin-1; plakin, hemi 90.4 0.64 2.2E-05 47.3 8.1 99 11-127 74-176 (296)
47 1wku_A Alpha-actinin 3; calpon 89.9 0.95 3.2E-05 45.0 8.9 103 10-129 27-133 (254)
48 2v4h_A NF-kappa-B essential mo 89.9 6.4 0.00022 33.0 12.2 81 190-279 27-107 (110)
49 1bhd_A Utrophin; calponin homo 89.8 2.9 9.8E-05 36.2 10.7 73 8-94 6-82 (118)
50 2wa7_A Filamin-B; disease muta 89.6 0.93 3.2E-05 44.8 8.4 104 10-128 20-127 (245)
51 3ol1_A Vimentin; structural ge 89.3 10 0.00034 32.8 14.3 52 369-420 52-103 (119)
52 3s4r_A Vimentin; alpha-helix, 89.1 8.5 0.00029 31.7 12.7 37 384-420 54-90 (93)
53 4b7l_A Filamin-B; structural p 89.0 1.3 4.5E-05 46.1 9.4 103 12-129 19-125 (347)
54 1aoa_A T-fimbrin; actin-bindin 88.9 0.56 1.9E-05 47.3 6.4 71 9-84 23-105 (275)
55 1wyp_A Calponin 1; CH domain, 88.5 3.2 0.00011 36.9 10.3 68 9-84 16-84 (136)
56 2d88_A Protein mical-3; all al 88.5 3.7 0.00013 35.7 10.5 85 13-115 12-102 (121)
57 3hoc_A Filamin-A; calponin hom 88.4 1.9 6.5E-05 43.2 9.8 87 12-115 172-260 (272)
58 1pxy_A Fimbrin-like protein; c 87.9 2 6.7E-05 47.3 10.5 97 13-125 400-502 (506)
59 3mq7_A Bone marrow stromal ant 87.9 11 0.00039 31.7 13.9 34 381-414 73-106 (121)
60 2v4h_A NF-kappa-B essential mo 87.3 8.8 0.0003 32.2 11.3 23 346-368 57-79 (110)
61 1ic2_A Tropomyosin alpha chain 87.1 7.2 0.00025 31.2 10.7 56 363-418 18-73 (81)
62 3oja_B Anopheles plasmodium-re 86.8 19 0.00064 40.0 18.1 29 391-419 549-577 (597)
63 1wku_A Alpha-actinin 3; calpon 86.7 2.3 8E-05 42.1 9.3 90 12-119 142-237 (254)
64 1rt8_A Fimbrin; filamentous ac 86.5 3.1 0.0001 45.8 11.0 82 12-113 163-249 (513)
65 1sjj_A Actinin; 3-helix bundle 86.4 1.1 3.6E-05 53.0 7.7 68 10-85 8-78 (863)
66 2l3g_A RHO guanine nucleotide 86.4 2.5 8.5E-05 37.1 8.2 70 10-86 12-90 (126)
67 1wyq_A Spectrin beta chain, br 86.4 1.9 6.5E-05 37.9 7.5 69 12-94 9-81 (127)
68 1h67_A Calponin alpha; cytoske 86.3 3 0.0001 35.4 8.5 66 11-84 4-70 (108)
69 1wyn_A Calponin-2; CH domain, 86.2 3.1 0.0001 37.5 9.0 67 10-84 17-84 (146)
70 3f7p_A Plectin-1; plakin, hemi 86.2 3.4 0.00012 41.9 10.3 69 12-94 191-263 (296)
71 3oja_B Anopheles plasmodium-re 86.0 5.6 0.00019 44.4 13.2 41 531-571 536-576 (597)
72 1pxy_A Fimbrin-like protein; c 85.9 0.94 3.2E-05 49.9 6.4 69 11-83 277-346 (506)
73 1wyr_A RHO guanine nucleotide 85.8 2.2 7.4E-05 37.1 7.5 70 10-86 6-84 (121)
74 1sh5_A Plectin 1, PLTN, PCN; a 85.5 0.9 3.1E-05 44.9 5.5 100 10-127 12-120 (245)
75 3hnw_A Uncharacterized protein 85.4 9.6 0.00033 33.8 11.6 22 381-402 105-126 (138)
76 2b9c_A Striated-muscle alpha t 85.2 15 0.0005 33.0 12.8 84 327-420 38-121 (147)
77 1p2x_A RNG2 protein, RAS GTPas 85.1 4.4 0.00015 37.0 9.6 91 12-116 13-106 (159)
78 1rt8_A Fimbrin; filamentous ac 85.1 1.2 4.1E-05 49.1 6.8 70 11-84 286-360 (513)
79 1dxx_A Dystrophin; structural 85.0 4.3 0.00015 39.9 10.3 68 9-85 15-86 (246)
80 2ocy_A RAB guanine nucleotide 84.8 22 0.00075 32.0 20.3 23 379-401 108-130 (154)
81 1p5s_A RAS GTPase-activating-l 84.5 3.3 0.00011 39.5 8.7 66 11-83 56-124 (203)
82 1wym_A Transgelin-2; CH domain 84.2 3.8 0.00013 37.3 8.7 41 9-49 16-63 (155)
83 3ghg_A Fibrinogen alpha chain; 82.8 11 0.00038 40.3 12.5 89 475-563 64-155 (562)
84 1deq_A Fibrinogen (alpha chain 82.8 40 0.0014 34.7 16.1 21 445-466 216-236 (390)
85 1dxx_A Dystrophin; structural 82.7 5.3 0.00018 39.3 9.8 44 12-55 137-184 (246)
86 3ghg_A Fibrinogen alpha chain; 82.3 14 0.00047 39.6 12.9 40 363-402 115-154 (562)
87 3swk_A Vimentin; cytoskeleton, 82.1 18 0.00062 29.2 11.0 16 450-465 4-19 (86)
88 2v66_B Nuclear distribution pr 81.4 24 0.00081 29.9 15.2 18 304-321 11-28 (111)
89 3tnu_A Keratin, type I cytoske 81.0 28 0.00095 30.5 13.0 19 395-413 107-125 (131)
90 1ic2_A Tropomyosin alpha chain 81.0 19 0.00066 28.6 11.2 27 524-550 5-31 (81)
91 1deq_A Fibrinogen (alpha chain 80.8 13 0.00045 38.2 11.7 17 499-515 63-79 (390)
92 1x79_B RAB GTPase binding effe 80.0 27 0.00091 29.6 12.6 29 391-419 75-103 (112)
93 2b9c_A Striated-muscle alpha t 79.9 33 0.0011 30.7 15.5 91 477-574 26-122 (147)
94 4gkw_A Spindle assembly abnorm 79.9 28 0.00097 29.9 21.1 33 340-375 97-129 (167)
95 3tnu_B Keratin, type II cytosk 79.8 30 0.001 30.1 14.5 17 258-274 53-69 (129)
96 4b7l_A Filamin-B; structural p 79.7 3 0.0001 43.3 7.0 70 12-94 142-212 (347)
97 3a7p_A Autophagy protein 16; c 79.7 28 0.00097 31.0 12.1 61 328-391 69-129 (152)
98 3i6x_A P195, RAS GTPase-activa 78.9 5.4 0.00018 37.7 7.8 41 13-53 50-93 (193)
99 3jsv_C NF-kappa-B essential mo 77.7 19 0.00063 29.4 9.4 25 344-368 33-57 (94)
100 3tnu_B Keratin, type II cytosk 77.7 35 0.0012 29.7 14.8 17 396-412 106-122 (129)
101 1ujo_A Transgelin; CH domain, 77.3 16 0.00054 32.7 10.1 42 9-50 8-56 (144)
102 3i00_A HIP-I, huntingtin-inter 76.5 15 0.00052 31.6 9.3 13 208-220 22-34 (120)
103 3oja_A Leucine-rich immune mol 75.2 93 0.0032 33.3 18.8 35 185-219 358-392 (487)
104 3jsv_C NF-kappa-B essential mo 75.2 28 0.00097 28.3 9.8 47 236-282 42-88 (94)
105 3cvf_A Homer-3, homer protein 74.7 24 0.00081 28.0 9.1 45 286-330 27-72 (79)
106 1wt6_A Myotonin-protein kinase 69.4 31 0.001 27.3 8.5 26 394-419 46-71 (81)
107 3bas_A Myosin heavy chain, str 68.9 45 0.0015 27.0 11.6 34 387-420 50-83 (89)
108 3cve_A Homer protein homolog 1 68.5 39 0.0013 26.2 9.2 45 450-502 4-48 (72)
109 1m1j_A Fibrinogen alpha subuni 67.8 65 0.0022 33.9 13.1 69 556-626 89-157 (491)
110 3nmd_A CGMP dependent protein 67.7 16 0.00056 28.2 6.6 43 236-278 21-63 (72)
111 2rr8_A Iqgap1 protein; F-actin 66.9 9.2 0.00031 36.0 6.3 40 13-52 28-70 (190)
112 3m91_A Proteasome-associated A 66.8 22 0.00076 25.6 6.7 41 475-515 9-49 (51)
113 2jee_A YIIU; FTSZ, septum, coi 66.2 48 0.0016 26.3 10.9 21 397-417 52-72 (81)
114 3s4r_A Vimentin; alpha-helix, 66.2 53 0.0018 26.8 12.4 63 327-394 23-85 (93)
115 1go4_E MAD1 (mitotic arrest de 64.9 41 0.0014 27.9 8.9 19 448-466 14-32 (100)
116 2w83_C C-JUN-amino-terminal ki 64.3 26 0.00089 27.3 7.0 40 181-220 17-56 (77)
117 3mq9_A Bone marrow stromal ant 63.3 1.6E+02 0.0054 31.3 16.5 18 382-399 446-463 (471)
118 3i00_A HIP-I, huntingtin-inter 61.7 77 0.0026 27.2 10.8 24 373-396 93-116 (120)
119 3a7p_A Autophagy protein 16; c 60.8 92 0.0031 27.8 11.6 57 357-413 74-130 (152)
120 1m1j_B Fibrinogen beta chain; 60.8 1.2E+02 0.004 32.5 14.0 23 602-624 169-191 (464)
121 4h22_A Leucine-rich repeat fli 60.2 73 0.0025 26.4 10.2 19 402-420 60-78 (103)
122 3q8t_A Beclin-1; autophagy, AT 58.9 74 0.0025 26.1 15.0 28 326-353 24-51 (96)
123 3mq7_A Bone marrow stromal ant 58.3 84 0.0029 26.5 14.3 38 479-516 29-66 (121)
124 3bas_A Myosin heavy chain, str 58.2 72 0.0025 25.7 12.3 13 288-300 16-28 (89)
125 3mq9_A Bone marrow stromal ant 57.1 1.8E+02 0.006 30.9 15.3 27 393-419 443-469 (471)
126 1m1j_A Fibrinogen alpha subuni 54.5 2.2E+02 0.0074 30.1 15.2 16 638-653 450-465 (491)
127 3cve_A Homer protein homolog 1 54.1 74 0.0025 24.6 10.6 28 326-353 6-33 (72)
128 2oqq_A Transcription factor HY 51.5 52 0.0018 22.4 5.9 32 191-222 7-38 (42)
129 3oja_A Leucine-rich immune mol 51.3 2.1E+02 0.0071 30.5 14.8 13 557-569 453-465 (487)
130 3cl3_D NF-kappa-B essential mo 50.8 70 0.0024 27.5 8.2 40 476-515 10-49 (130)
131 1go4_E MAD1 (mitotic arrest de 48.6 82 0.0028 26.1 8.1 28 190-217 15-42 (100)
132 3q8t_A Beclin-1; autophagy, AT 47.2 1.2E+02 0.004 24.9 14.7 12 337-348 21-32 (96)
133 3cvf_A Homer-3, homer protein 42.7 1.2E+02 0.0042 23.8 10.1 28 326-353 12-39 (79)
134 3qne_A Seryl-tRNA synthetase, 42.2 80 0.0027 34.0 9.2 67 282-351 36-102 (485)
135 3m48_A General control protein 41.4 39 0.0013 21.8 3.8 27 198-224 4-30 (33)
136 1ci6_A Transcription factor AT 41.3 98 0.0034 23.1 7.0 32 265-299 26-57 (63)
137 1x8y_A Lamin A/C; structural p 41.2 1.4E+02 0.0046 23.9 9.5 26 390-415 53-78 (86)
138 2oxj_A Hybrid alpha/beta pepti 41.2 47 0.0016 21.4 4.2 29 196-224 3-31 (34)
139 2no2_A HIP-I, huntingtin-inter 41.0 1.6E+02 0.0054 24.6 16.8 26 380-405 76-101 (107)
140 3efg_A Protein SLYX homolog; x 40.7 1.2E+02 0.004 23.9 7.6 43 237-279 10-52 (78)
141 1gd2_E Transcription factor PA 40.5 62 0.0021 24.9 5.8 35 189-223 24-58 (70)
142 1l8d_A DNA double-strand break 39.0 1.7E+02 0.0057 24.3 12.8 32 388-419 12-43 (112)
143 1kd8_B GABH BLL, GCN4 acid bas 38.8 51 0.0017 21.6 4.1 30 196-225 3-32 (36)
144 3qh9_A Liprin-beta-2; coiled-c 38.8 1.4E+02 0.0049 23.5 9.1 27 326-352 25-51 (81)
145 4gkw_A Spindle assembly abnorm 38.8 1.9E+02 0.0064 24.8 19.0 58 449-514 14-71 (167)
146 3c3f_A Alpha/beta peptide with 38.1 57 0.0019 21.0 4.2 29 196-224 3-31 (34)
147 1wle_A Seryl-tRNA synthetase; 37.8 2.5E+02 0.0084 30.4 12.3 67 282-351 73-147 (501)
148 2dq0_A Seryl-tRNA synthetase; 37.5 84 0.0029 33.6 8.5 69 280-351 32-100 (455)
149 3efg_A Protein SLYX homolog; x 37.3 1E+02 0.0034 24.2 6.8 24 326-349 13-36 (78)
150 3iox_A AGI/II, PA; alpha helix 37.2 4.1E+02 0.014 28.3 15.3 22 258-279 5-26 (497)
151 2dgc_A Protein (GCN4); basic d 36.9 67 0.0023 24.1 5.4 33 192-224 28-60 (63)
152 3m91_A Proteasome-associated A 36.6 1.2E+02 0.004 21.8 6.9 16 382-397 26-41 (51)
153 1kd8_A GABH AIV, GCN4 acid bas 35.7 35 0.0012 22.3 3.0 28 198-225 5-32 (36)
154 3uul_A Utrophin; spectrin repe 35.6 1.8E+02 0.0062 23.7 10.4 9 292-300 8-16 (118)
155 3nmd_A CGMP dependent protein 35.5 1.2E+02 0.0042 23.4 6.7 20 395-414 42-61 (72)
156 1l8d_A DNA double-strand break 35.4 1.9E+02 0.0065 23.9 13.4 33 483-515 11-43 (112)
157 2hy6_A General control protein 35.3 62 0.0021 20.9 4.1 29 196-224 3-31 (34)
158 1ci6_A Transcription factor AT 35.0 1.1E+02 0.0039 22.8 6.5 25 195-219 31-55 (63)
159 3ky9_A Proto-oncogene VAV; cal 34.8 1.5E+02 0.0051 32.7 10.4 42 12-53 7-59 (587)
160 3c3g_A Alpha/beta peptide with 33.8 74 0.0025 20.4 4.2 27 198-224 4-30 (33)
161 1x8y_A Lamin A/C; structural p 33.7 1.8E+02 0.0062 23.2 9.6 51 257-320 30-80 (86)
162 3mov_A Lamin-B1; LMNB1, B-type 33.5 1.8E+02 0.0062 23.7 8.0 7 405-411 77-83 (95)
163 1dh3_A Transcription factor CR 33.4 77 0.0026 23.0 5.1 32 192-223 20-51 (55)
164 2wt7_B Transcription factor MA 33.3 1.9E+02 0.0066 23.3 9.4 39 381-419 50-88 (90)
165 4etp_A Kinesin-like protein KA 32.7 1.1E+02 0.0036 32.3 8.2 57 448-512 5-61 (403)
166 3qh9_A Liprin-beta-2; coiled-c 32.4 1.8E+02 0.0063 22.8 9.9 28 321-348 27-54 (81)
167 2wq1_A General control protein 32.3 80 0.0027 20.3 4.2 28 197-224 3-30 (33)
168 1t2k_D Cyclic-AMP-dependent tr 32.2 1.5E+02 0.0052 21.8 7.0 33 321-353 23-55 (61)
169 1gk4_A Vimentin; intermediate 31.9 1.9E+02 0.0065 22.9 12.2 20 394-413 55-74 (84)
170 1p9i_A Cortexillin I/GCN4 hybr 31.9 45 0.0015 20.2 2.9 16 451-466 4-19 (31)
171 3m9b_A Proteasome-associated A 31.6 63 0.0022 31.4 5.6 66 451-516 22-95 (251)
172 1jcd_A Major outer membrane li 31.6 1.5E+02 0.005 21.4 7.3 43 262-307 4-46 (52)
173 2xdj_A Uncharacterized protein 31.2 2E+02 0.0068 22.9 10.1 20 383-402 31-50 (83)
174 2yy0_A C-MYC-binding protein; 30.3 38 0.0013 24.6 2.9 12 455-466 21-32 (53)
175 1fxk_A Prefoldin; archaeal pro 30.3 2.2E+02 0.0076 23.1 11.7 20 400-419 79-98 (107)
176 2bni_A General control protein 29.4 77 0.0026 20.5 3.8 28 197-224 4-31 (34)
177 1m1j_B Fibrinogen beta chain; 29.4 5.4E+02 0.019 27.3 17.6 8 271-278 102-109 (464)
178 2zqm_A Prefoldin beta subunit 29.2 2.4E+02 0.0084 23.3 13.1 32 484-515 15-46 (117)
179 3lss_A Seryl-tRNA synthetase; 28.9 2.9E+02 0.01 29.6 11.0 15 286-300 44-58 (484)
180 2zqm_A Prefoldin beta subunit 28.6 2.5E+02 0.0086 23.2 11.9 23 188-210 14-36 (117)
181 1jnm_A Proto-oncogene C-JUN; B 28.5 1.4E+02 0.0049 22.0 6.1 36 318-353 20-55 (62)
182 4etp_A Kinesin-like protein KA 28.2 1.4E+02 0.0047 31.4 8.1 48 366-420 11-58 (403)
183 3iv1_A Tumor susceptibility ge 28.0 2.2E+02 0.0075 22.3 9.8 31 390-420 43-73 (78)
184 2r2v_A GCN4 leucine zipper; co 27.6 1.1E+02 0.0039 19.7 4.3 28 197-224 4-31 (34)
185 1uo4_A General control protein 27.1 99 0.0034 20.0 4.0 28 197-224 4-31 (34)
186 4e61_A Protein BIM1; EB1-like 26.8 2.7E+02 0.0092 23.2 7.9 30 391-420 23-52 (106)
187 1deb_A APC protein, adenomatou 26.4 1.7E+02 0.0059 20.7 6.9 35 359-393 11-45 (54)
188 1wlq_A Geminin; coiled-coil; 2 26.4 2.4E+02 0.0083 22.3 8.5 38 258-295 41-78 (83)
189 1m1j_C Fibrinogen gamma chain; 26.4 5.7E+02 0.02 26.7 14.3 37 384-420 96-132 (409)
190 2zxx_A Geminin; coiled-coil, c 26.3 2.4E+02 0.0081 22.2 7.2 38 259-296 38-75 (79)
191 1hjb_A Ccaat/enhancer binding 26.2 1.4E+02 0.0048 24.0 5.9 26 380-405 44-69 (87)
192 1d7m_A Cortexillin I; coiled-c 25.8 2.5E+02 0.0087 22.4 15.4 11 391-401 72-82 (101)
193 3ra3_A P1C; coiled coil domain 25.7 91 0.0031 18.5 3.4 20 382-401 3-22 (28)
194 2wvr_A Geminin; DNA replicatio 25.3 4.1E+02 0.014 24.7 9.5 38 259-296 119-156 (209)
195 2w6a_A ARF GTPase-activating p 25.2 2E+02 0.007 21.1 8.0 43 370-412 18-60 (63)
196 2lw1_A ABC transporter ATP-bin 25.0 2.6E+02 0.0089 22.2 9.0 42 210-251 31-73 (89)
197 1kd8_A GABH AIV, GCN4 acid bas 24.9 88 0.003 20.5 3.5 23 331-353 5-27 (36)
198 3s9g_A Protein hexim1; cyclin 24.8 2.8E+02 0.0097 22.6 9.3 26 392-417 64-89 (104)
199 1jnm_A Proto-oncogene C-JUN; B 24.7 1.9E+02 0.0066 21.3 6.2 32 193-224 21-52 (62)
200 1deb_A APC protein, adenomatou 24.5 1.9E+02 0.0065 20.5 7.9 21 197-217 6-26 (54)
201 1fxk_A Prefoldin; archaeal pro 24.2 2.9E+02 0.0098 22.4 11.8 24 492-515 18-41 (107)
202 3iv1_A Tumor susceptibility ge 24.2 2.6E+02 0.0089 21.9 11.1 24 384-407 44-67 (78)
203 2ke4_A CDC42-interacting prote 23.8 3E+02 0.01 22.5 9.5 24 373-396 63-86 (98)
204 1gk4_A Vimentin; intermediate 23.8 2.7E+02 0.0092 21.9 12.0 14 307-320 65-78 (84)
205 2yy0_A C-MYC-binding protein; 23.5 1.5E+02 0.005 21.4 5.0 30 532-561 19-48 (53)
206 1hjb_A Ccaat/enhancer binding 23.2 2.5E+02 0.0087 22.4 6.9 14 287-300 58-71 (87)
207 2w6b_A RHO guanine nucleotide 23.2 2.2E+02 0.0074 20.6 7.0 23 284-306 8-30 (56)
208 3m9b_A Proteasome-associated A 22.5 90 0.0031 30.3 4.9 15 236-250 56-70 (251)
209 1gk7_A Vimentin; intermediate 22.3 1.1E+02 0.0037 20.6 3.8 20 328-347 7-26 (39)
210 1gu4_A CAAT/enhancer binding p 21.4 2.9E+02 0.0098 21.6 6.7 30 267-299 41-70 (78)
211 2r6a_C DNAG primase, helicase 21.1 1.2E+02 0.0042 25.9 5.3 46 36-109 20-65 (143)
212 2zc2_A DNAD-like replication p 21.1 92 0.0032 24.1 4.0 53 82-140 5-62 (78)
213 2oa5_A Hypothetical protein BQ 20.8 63 0.0022 27.0 2.9 23 447-469 9-31 (110)
214 1ses_A Seryl-tRNA synthetase; 20.7 2.5E+02 0.0085 29.6 8.4 68 279-351 28-95 (421)
215 2i1j_A Moesin; FERM, coiled-co 20.5 1.3E+02 0.0043 33.3 6.3 14 112-125 119-132 (575)
216 3iox_A AGI/II, PA; alpha helix 20.4 8E+02 0.027 26.2 16.7 11 308-318 64-74 (497)
217 2w83_C C-JUN-amino-terminal ki 20.4 3.1E+02 0.01 21.3 9.3 33 380-412 38-70 (77)
218 3s9g_A Protein hexim1; cyclin 20.2 3.6E+02 0.012 22.0 9.0 28 188-215 31-58 (104)
No 1
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=100.00 E-value=2.4e-47 Score=358.28 Aligned_cols=159 Identities=50% Similarity=0.864 Sum_probs=154.3
Q ss_pred CCCcChHHhHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHH
Q psy11659 3 NTQEDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEG 82 (684)
Q Consensus 3 ~~~~~~~~~~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~ 82 (684)
.|++++.++++|||.|+|||++.+|+.+++||+||++|++||++|||+||+++||.+|+.++++ ||++|++||++|+++
T Consensus 2 ~~~~~~~~~~~aLl~W~~tf~~~~~~~~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~-nw~lr~~NLk~l~~~ 80 (164)
T 1wix_A 2 SSGSSGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGD-NWRIKASNLKKVLHG 80 (164)
T ss_dssp CCCCCSCHHHHHHHHHHTTCCCSSCCCSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGG-CSHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHcCCCCCcCcHHHhccHHHHHHHHHHhCccccCchHhhhhcccCcc-cHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHHHhcCCCchhhhHHhHcCCHHHHHHHHHHHHHHhcccC
Q psy11659 83 IVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHG 162 (684)
Q Consensus 83 i~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~av~~~~~~~~I~~I~~L~~~~Q~~lm~~Iq~~~~~~~ 162 (684)
|.+||+++|++++..+++||+..||+++|+.|+.+|++|||||||+|++|++||++||+|++++|++||.+||++|+.++
T Consensus 81 i~~Yy~e~L~~~i~~~~~pd~~~Ia~~~d~~el~kLl~LiLg~AV~c~~ke~~I~~I~~L~~~~Q~~im~~Iqev~~~~~ 160 (164)
T 1wix_A 81 ITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG 160 (164)
T ss_dssp HHHHHHTTTCCCCCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCcccccCCCCHHHHHhCCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHHHHHHcccC
Confidence 99999999999887789999999999999999999999999999999999999999999999999999999999998854
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.54 E-value=1.4e-07 Score=115.51 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11659 234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLEL 276 (684)
Q Consensus 234 ~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~ 276 (684)
+.+..++.++.+++..+..++..+.++..++..++.++..++.
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667766666666555555555555555544444443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.47 E-value=2.3e-07 Score=113.58 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11659 492 KMKTLENRKANQRILELEAELK 513 (684)
Q Consensus 492 ~~Le~~~~~l~~~i~eLq~qle 513 (684)
..++.....+..++..+..+++
T Consensus 1112 ~~le~~l~~Le~eie~L~eeLe 1133 (1184)
T 1i84_S 1112 NNALKKIRELESHISDLQEDLE 1133 (1184)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433333
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.32 E-value=0.093 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDLEEELKK 352 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LEeel~~ 352 (684)
.+..++.......++++.|+.++..
T Consensus 131 SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 131 SLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555544
No 5
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.00085 Score=59.29 Aligned_cols=90 Identities=21% Similarity=0.298 Sum_probs=59.2
Q ss_pred CcChHHhHHHHHHHHhhcCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659 5 QEDQSELCNILLKWLQTFTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI 83 (684)
Q Consensus 5 ~~~~~~~~~~l~~W~~tf~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i 83 (684)
+++ .+....|+.||++++++.|..++ -|++||+.+++|++...|...+-. .-+++. .-..|+.|...+-+
T Consensus 11 ~l~-~ee~~el~~WL~~l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh-----~y~~~~-S~~~K~~NW~~ln~-- 81 (127)
T 2ee7_A 11 SVD-EEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMH-----NYVPAN-SLQQKLSNWGHLNR-- 81 (127)
T ss_dssp SCC-HHHHHHHHHHHHHSCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCS-----SCCCCS-SHHHHHHHHHHHHH--
T ss_pred CCC-HHHHHHHHHHHHcCCCCCCCCchhhhccchhHHHHHHHHHCcCccccc-----ccCCCC-cHHHHHHhHHHHHH--
Confidence 455 56677899999999999887754 789999999999999999754321 012333 55667777755542
Q ss_pred HHHHHHhhcccccCccccchhHHhh
Q psy11659 84 VDYFQEYFDQALGEFGKVDVHKIVE 108 (684)
Q Consensus 84 ~~y~~~~l~~~~~~~~~pd~~~ia~ 108 (684)
.+|..-=..++..++..|+.
T Consensus 82 -----kvl~kl~~~l~~~~i~~i~~ 101 (127)
T 2ee7_A 82 -----KVLKRLNFSVPDDVMRKIAQ 101 (127)
T ss_dssp -----HTTGGGTCCCCHHHHHHHHT
T ss_pred -----HHHHHcCCCCCHHHHHHHHh
Confidence 23332111334456677775
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.22 E-value=0.041 Score=55.13 Aligned_cols=13 Identities=0% Similarity=-0.133 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy11659 288 ARYLKDEVDILRE 300 (684)
Q Consensus 288 ~~~L~deld~lr~ 300 (684)
+..++.+++.++.
T Consensus 62 ~~~~e~~i~~~~~ 74 (256)
T 3na7_A 62 VSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.12 E-value=0.18 Score=47.25 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy11659 268 SKQMEDLELKLNS 280 (684)
Q Consensus 268 e~el~~l~~k~~~ 280 (684)
++++..+..++..
T Consensus 48 E~eL~~~Ek~~~~ 60 (189)
T 2v71_A 48 EAQLVQAEQRNRD 60 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.85 E-value=0.24 Score=45.28 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLI 406 (684)
Q Consensus 363 ~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~ 406 (684)
+...+..|+..+.....+..++..+++.|.+++..+++++..+.
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33356666777777777777778888888888888888877766
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.74 E-value=0.25 Score=49.38 Aligned_cols=16 Identities=6% Similarity=0.001 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQT 343 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~ 343 (684)
++..+++....++..+
T Consensus 105 ~i~~lE~eile~~e~i 120 (256)
T 3na7_A 105 RSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.58 E-value=0.43 Score=43.63 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=6.7
Q ss_pred chHHHHHHHHHHHHHH
Q psy11659 235 GNSSMRRQMDALKEEL 250 (684)
Q Consensus 235 ~~~~L~~qleel~e~l 250 (684)
++..|+.|++++.+.+
T Consensus 7 Ki~~LekQL~E~n~kL 22 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLL 22 (168)
T ss_dssp ---CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555444
No 11
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.39 E-value=0.4 Score=43.36 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659 483 KLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSI 562 (684)
Q Consensus 483 ~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L 562 (684)
.|-.+-.+...|+..+......+...+..+..++. ++.++..+..++......+..|...+..........+...
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~-----~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~ 81 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQ-----LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEA 81 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-----HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555554444321 1222222333333344444445555555557777788888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHhh
Q psy11659 563 TQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK 626 (684)
Q Consensus 563 ~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~~ 626 (684)
..++.++.++... .|++|+.+.-.-...... +......|+.++.+++..+..+...+..
T Consensus 82 ~~ie~ElEeLTas---LFeEAN~MVa~ar~~~~~--~e~r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 82 DKLNKEVEDLTAS---LFDEANNMVADARKEKYA--IEILNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888766554 488888887665544433 5667788999999999999888877654
No 12
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=96.27 E-value=0.006 Score=53.51 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=63.0
Q ss_pred HHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhc
Q psy11659 13 NILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFD 92 (684)
Q Consensus 13 ~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~ 92 (684)
..|+.|||+. +..+...+++|.||+++.++++-|-|...+ +.+|+-++.. . ---+.|++.+-..+..| |
T Consensus 8 ~ElL~WIN~~-L~~~~~kiE~L~~Ga~yCqlmd~l~Pg~v~---l~KVkf~a~~-e-~e~~~N~k~lq~af~k~-----g 76 (123)
T 2qjz_A 8 HDMLAWINES-LQLNLTKIEQLCSGAAYCQFMDMLFPGSIA---LKKVKFQAKL-E-HEYIQNFKILQAGFKRM-----G 76 (123)
T ss_dssp HHHHHHHHHH-HTCCCCCGGGGGGSHHHHHHHHHHSTTSSC---GGGCCTTCCS-H-HHHHHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHH-HCCCCchHHHcCchHHHHHHHHHHccCCCc---HHHhccCCCC-h-HHHHHHHHHHHHHHHHc-----C
Confidence 4589999987 466677889999999999999999998765 3466533222 1 23456777666654443 4
Q ss_pred ccccCccccchhHHhhcCCHHHHHHHHHHH
Q psy11659 93 QALGEFGKVDVHKIVENIDAKELARLMQLI 122 (684)
Q Consensus 93 ~~~~~~~~pd~~~ia~~~d~~el~~ll~lv 122 (684)
.+ ..+|+..+.+ +...+-..+++.+
T Consensus 77 V~----k~i~v~kLvk-gk~qdnleflqW~ 101 (123)
T 2qjz_A 77 VD----KIIPVDKLVK-GKFQDNFEFVQWF 101 (123)
T ss_dssp CC----CCCCHHHHTT-CCHHHHHHHHHHH
T ss_pred CC----CccCHHHHHc-CCchhHHHHHHHH
Confidence 22 2467788887 5555555555544
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.04 E-value=2.6 Score=55.86 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Q psy11659 527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEI 569 (684)
Q Consensus 527 l~e~~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el 569 (684)
+......+++...-+..|..+..-|...+..+...+..+-.|.
T Consensus 2065 ~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2065 SSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 3344455566666777777777777777777777777766664
No 14
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.012 Score=53.79 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=68.4
Q ss_pred HHhHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659 9 SELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ 88 (684)
Q Consensus 9 ~~~~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~ 88 (684)
..--..|+.|||+. +......+++|.||+++.++++-|-|...+ |.+|+-++.. . ---+.|++.+-..+..|
T Consensus 21 ~~sr~ElL~WIN~~-L~~~~~kiE~L~~GaayCQLmd~L~PgsV~---l~KVkf~a~~-e-~e~~~N~k~lQ~af~k~-- 92 (159)
T 1wyo_A 21 NLSRHDMLAWVNDS-LHLNYTKIEQLCSGAAYCQFMDMLFPGCVH---LRKVKFQAKL-E-HEYIHNFKVLQAAFKKM-- 92 (159)
T ss_dssp CCCHHHHHHHHHHH-SCCCCSSGGGGGGCHHHHHHHHHHSTTSSC---TTSCCTTCCS-S-HHHHHHHHHHHHHHHHH--
T ss_pred chhHHHHHHHHHHH-HCCCCchhhhcCccHHHHHHHHHHccCCCc---HhhhccCCCC-h-HHHHHHHHHHHHHHHHc--
Confidence 34567899999976 466677889999999999999999997765 3466533222 2 23456777666655444
Q ss_pred HhhcccccCccccchhHHhhcCCHHHHHHHHHHHH-HHHhcCCC
Q psy11659 89 EYFDQALGEFGKVDVHKIVENIDAKELARLMQLIL-GCAINCNR 131 (684)
Q Consensus 89 ~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl-~~av~~~~ 131 (684)
|.+ ..+|+..+.+ +...+-..+++.+- ++..+++.
T Consensus 93 ---gV~----k~ipV~kLvk-gk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 93 ---GVD----KIIPVEKLVK-GKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp ---TCC----CCCCHHHHTT-TCSHHHHHHHHHHHHHHHTTCCS
T ss_pred ---CCC----CccCHHHHhc-CCchhHHHHHHHHHHHHHHcCCC
Confidence 322 2477888887 44444444444443 23344433
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.64 E-value=4 Score=54.25 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVE 408 (684)
Q Consensus 359 ~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e 408 (684)
+.+.++.++...+.++..+..-+..|..|+.++.+.+..+......+...
T Consensus 2057 ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2057 ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 33444444555555555555555566666666666666666655555443
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.54 E-value=0.23 Score=59.78 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11659 393 EKVTSLQREKEKLIVERDSL 412 (684)
Q Consensus 393 ~~l~~le~e~e~l~~e~~~L 412 (684)
+++..|++++..|+.+.+.+
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.49 E-value=0.46 Score=57.13 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=13.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Q psy11659 379 KRADKSEFENKKLQEKVTSLQRE 401 (684)
Q Consensus 379 ~~~~~le~e~~~L~~~l~~le~e 401 (684)
.++..++.++..|+..+++++..
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666643
No 18
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.01 E-value=1.4 Score=37.10 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 365 KQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418 (684)
Q Consensus 365 ~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~e 418 (684)
..+..|++++......++..+..+.....++....+.......+..+|..+|.-
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433344444444444444444444444444445555544443
No 19
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.98 E-value=0.046 Score=48.60 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=60.0
Q ss_pred HHhHHHHHHHHhhc-C---CCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659 9 SELCNILLKWLQTF-T---LVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI 83 (684)
Q Consensus 9 ~~~~~~l~~W~~tf-~---~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i 83 (684)
......+..|+|+. . +..++.+ ++||.||++|..++..|.|...+ ++...+. +-.-++.|+...++.+
T Consensus 17 ~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~-----~~~~~p~--~~~~~~eNv~~aL~~~ 89 (129)
T 2yrn_A 17 EDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE-----DINGCPK--NRSQMIENIDACLNFL 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT-----TCCSSCC--STTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc-----cccCCCC--cHHHHHHHHHHHHHHH
Confidence 34566899999984 3 2234666 48999999999999999998765 2333332 2234667888877766
Q ss_pred HHHHHHhhcccccCccccchhHHhhcCCHHHHHHHH
Q psy11659 84 VDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLM 119 (684)
Q Consensus 84 ~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll 119 (684)
.. .|.++.. +...-|.. +++.-+..|+
T Consensus 90 ~~-----~gv~~~~---i~~~DI~d-gn~~~iL~Ll 116 (129)
T 2yrn_A 90 AA-----KGINIQG---LSAEEIRN-GNLKAILGLF 116 (129)
T ss_dssp HH-----HTCCCTT---CCHHHHHH-TCHHHHHHHH
T ss_pred HH-----hCCcccC---CChhhhhc-CCHhHHHHHH
Confidence 54 3544322 23445554 5655444333
No 20
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=94.51 E-value=0.22 Score=44.26 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=60.2
Q ss_pred HHHHHHHHhhc--CCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF--TLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ 88 (684)
Q Consensus 12 ~~~l~~W~~tf--~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~ 88 (684)
..++..|+|+. ..+.++.++ .||.||++|..++..|.|...+- .++...|. +..-++.|....+..+..
T Consensus 24 ~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~---~~~~~~p~--~r~~kieNv~~aL~~lk~--- 95 (131)
T 2vzc_A 24 KKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPL---HSFFLTPD--SFEQKVLNVSFAFELMQD--- 95 (131)
T ss_dssp HHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCT---TSSCSSCC--SHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCH---HHhcCCCC--cHHHHHHHHHHHHHHHHH---
Confidence 56799999985 234578775 69999999999999999987652 22322332 345677788777764432
Q ss_pred HhhcccccCccccchhHHhhcCCHHHHHHHH
Q psy11659 89 EYFDQALGEFGKVDVHKIVENIDAKELARLM 119 (684)
Q Consensus 89 ~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll 119 (684)
.|..+. -+...-|.. +++.-+..|+
T Consensus 96 --~gi~l~---~I~~~DIvd-Gn~kliLgLi 120 (131)
T 2vzc_A 96 --GGLEKP---KPRPEDIVN-CDLKSTLRVL 120 (131)
T ss_dssp --TTCCCC---SSCHHHHHT-TCHHHHHHHH
T ss_pred --cCCCcC---CCCHHHhhC-CCHHhHHHHH
Confidence 454332 244455654 5665544333
No 21
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=94.47 E-value=0.075 Score=52.69 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhh
Q psy11659 12 CNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYF 91 (684)
Q Consensus 12 ~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l 91 (684)
-..||.|||.. +...+..+++|++|++..++++-|-|...+- .+++-.+.. -.-.++|+|.+ +..+
T Consensus 17 R~elL~WiN~~-L~~~~~kiEel~tGaayCQlmd~l~P~~i~l---~kVkf~a~~--e~e~i~N~k~L--------Q~~F 82 (268)
T 2r8u_A 17 RHDMLAWINES-LQLNLTKIEQLCSGAAYCQFMDMLFPGSIAL---KKVKFQAKL--EHEYIQNFKIL--------QAGF 82 (268)
T ss_dssp HHHHHHHHHHH-HTCCCCCGGGGGGSHHHHHHHHHHSTTSSCG---GGCCTTCCS--HHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHH-hcCCcchHHHcccchHHHHHHHHHccCCCch---hhccCCCCC--HHHHHHHHHHH--------HHHH
Confidence 35699999976 4567889999999999999999999977653 455333221 11234555332 3333
Q ss_pred cccccCccccchhHHhhcCCHHHHHHHHHHH-HHHHhcCCC
Q psy11659 92 DQALGEFGKVDVHKIVENIDAKELARLMQLI-LGCAINCNR 131 (684)
Q Consensus 92 ~~~~~~~~~pd~~~ia~~~d~~el~~ll~lv-l~~av~~~~ 131 (684)
.. ......++|..+.+ +...+=..+++++ -++..+++.
T Consensus 83 ~k-~~I~k~ipV~kLvk-gk~qDNlEFlqWfkkf~d~n~~~ 121 (268)
T 2r8u_A 83 KR-MGVDKIIPVDKLVK-GKFQDNFEFVQWFKKFFDANYDG 121 (268)
T ss_dssp HH-TTCCCCCCHHHHTT-TCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HH-cCCCCccCHHHHhc-cCchhHHHHHHHHHHHHHHcCCC
Confidence 22 11123577888887 5555544555554 233344443
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.44 E-value=1.8 Score=35.76 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE 514 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~ 514 (684)
+..+++++.+|+.++.... .++..|...|.+....+...+..+..+..++.+|...+=+
T Consensus 7 ~e~lre~l~~le~~~~~~~--------~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRD--------DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988877 7888899999999999999999998888888888775433
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.21 E-value=2.2 Score=35.86 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 332 LESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDS 411 (684)
Q Consensus 332 Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~ 411 (684)
|.........+...++.+++.+ ..........+..+++++......++..+........++...++.......+..+
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~---e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQA---EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433 2233333334444444444444444444444444444444444444445555555
Q ss_pred HHHHHHH
Q psy11659 412 LKETNEE 418 (684)
Q Consensus 412 L~e~~~e 418 (684)
|..+|.-
T Consensus 91 LnRriql 97 (101)
T 3u59_A 91 LNRRIQL 97 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.17 E-value=2.2 Score=35.86 Aligned_cols=95 Identities=8% Similarity=0.118 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhH
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI 527 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl 527 (684)
|.-++.++..|+.+..... ++...++..+.++......++.++..+..++..+...++.... ++
T Consensus 4 MdaIKkKm~~lk~e~e~a~--------drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee--------~L 67 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENAL--------DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE--------EL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 3556777777777766665 6666777777777777777777777766666666665555432 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy11659 528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKL 558 (684)
Q Consensus 528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~~l 558 (684)
.++...++.........+.....+.+++.-+
T Consensus 68 ~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 68 HKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 25
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.84 E-value=3.7 Score=37.19 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL 405 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l 405 (684)
..++..|+.........+..|+..-.++ -...+.|..+|..|..++.+...+..-.+.....|+..++.++.++...
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seeka---sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKY---SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666655555 5566777778888888888777777777777777777766666554443
No 26
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.66 E-value=2.9 Score=35.49 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 329 VKQLESKNLSYIQQTLDLEEELKK 352 (684)
Q Consensus 329 ~~~Le~~~~~l~~~~~~LEeel~~ 352 (684)
+..++.+.....++.+-||.++..
T Consensus 79 LeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 79 LEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555543
No 27
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=93.59 E-value=0.065 Score=47.00 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=50.4
Q ss_pred HHHHHHHhhc----CCCCCCCCcc--ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659 13 NILLKWLQTF----TLVAPHQSLA--DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY 86 (684)
Q Consensus 13 ~~l~~W~~tf----~~~~~~~~~~--dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y 86 (684)
..|+.|+|.- ....++.+|. +++||++|..+|+.|.|...+-+. +.... -+-.-+..|.+.++.-.
T Consensus 10 ~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~l---v~~~~--L~~~d~~~Na~~ais~A--- 81 (124)
T 1wjo_A 10 DIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDL---VKSGN--LTEDDKHNNAKYAVSMA--- 81 (124)
T ss_dssp HHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTT---SCCSS--CCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHH---hcCCC--CCHHHHHHHHHHHHHHH---
Confidence 4699999975 2345688887 999999999999999999986532 11111 01244678888777644
Q ss_pred HHHhhcccc
Q psy11659 87 FQEYFDQAL 95 (684)
Q Consensus 87 ~~~~l~~~~ 95 (684)
+.+|.++
T Consensus 82 --rklG~~~ 88 (124)
T 1wjo_A 82 --RRIGARV 88 (124)
T ss_dssp --HHTCCSC
T ss_pred --HHcCCCc
Confidence 2478653
No 28
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.49 E-value=3.7 Score=36.09 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 394 KVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 394 ~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
....+...+..+..++..|+..+++++
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555443
No 29
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.35 E-value=3 Score=34.96 Aligned_cols=93 Identities=12% Similarity=0.195 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHhH
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI 527 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~~~~~lk~kl 527 (684)
|.-++.++..|..+..... ++...++..+.++......++.+...+..++..++..++.... ++
T Consensus 4 md~iKkKm~~lk~e~e~a~--------d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e--------~l 67 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAI--------DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE--------SV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 4556777777777766665 6666777777777777777777776666666666665554432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy11659 528 FELQNEIKNLKEQINHQQEEHLEQGKLIE 556 (684)
Q Consensus 528 ~e~~~ele~~r~~l~~le~q~~~~~~~~~ 556 (684)
..+...++.........+.....+.++|.
T Consensus 68 ~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 68 KEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 30
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.39 Score=42.12 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhh
Q psy11659 12 CNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYF 91 (684)
Q Consensus 12 ~~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l 91 (684)
-..||.|||.+ +......+++|.+|++..++++-|-|+ . .+.+++-.+.. -.--+.|++.+=.. +. .+
T Consensus 12 R~elL~WiN~~-L~~n~~kiEel~tGaayCQl~d~l~g~-v---~l~kVkf~a~~--e~e~~~N~k~LQ~~----f~-k~ 79 (127)
T 2qjx_A 12 RTELLTWLNGL-LNLNYKKIEECGTGAAYCQIMDSIYGD-L---PMNRVKFNATA--EYEFQTNYKILQSC----FS-RH 79 (127)
T ss_dssp HHHHHHHHHHH-HTCCCCSGGGGGGSHHHHHHHHHHHCC-S---CGGGSCTTCCS--HHHHHHHHHHHHHH----HH-HT
T ss_pred HHHHHHHHHHH-HcCCccHHHHccchHHHHHHHhhhccc-c---CccccCCCCCC--HHHHHHHHHHHHHH----HH-Hc
Confidence 35699999987 456678899999999999999999875 2 24455432221 12233555433221 11 12
Q ss_pred cccccCccccchhHHhhcCCHHHHHHHHHHH
Q psy11659 92 DQALGEFGKVDVHKIVENIDAKELARLMQLI 122 (684)
Q Consensus 92 ~~~~~~~~~pd~~~ia~~~d~~el~~ll~lv 122 (684)
+. ...+++..+.+ +...+-..+++.+
T Consensus 80 ~I----~k~ipV~kLvK-grfQDNlEFlQWf 105 (127)
T 2qjx_A 80 GI----EKTVYVDKLIR-CKFQDNLEFLQWL 105 (127)
T ss_dssp TC----CCCCCHHHHTT-TCHHHHHHHHHHH
T ss_pred CC----CCccCHHHHhc-cCchhHHHHHHHH
Confidence 32 13467788877 4444444444443
No 31
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.80 E-value=4.7 Score=35.41 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 287 EARYLKDEVDILRE 300 (684)
Q Consensus 287 ~~~~L~deld~lr~ 300 (684)
++..+..++..++.
T Consensus 14 E~~~~~eel~~lke 27 (129)
T 2fxo_A 14 EMASMKEEFTRLKE 27 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 32
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.76 E-value=0.28 Score=43.13 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=46.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHH
Q psy11659 544 QQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKT 623 (684)
Q Consensus 544 le~q~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~ 623 (684)
|...+..........+.....++.++..+... .|++|+.+.-.-...... +......|+.++.+++..+..+...
T Consensus 51 L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas---LFeEAN~MVa~ar~~~~~--~e~r~~~L~~ql~e~e~ll~~lq~Q 125 (135)
T 2e7s_A 51 LREDIAKENELRTKAEEEADKLNKEVEDLTAS---LFDEANNLVADARMEKYA--IEILNKRLTEQLREKDMLLDTLTLQ 125 (135)
T ss_dssp HHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH---HHHHHHHHHHHTTHHHHH--HHHHHHHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333456666677777777777755543 488888887666554443 5666788999999999888877665
Q ss_pred Hh
Q psy11659 624 LE 625 (684)
Q Consensus 624 ~~ 625 (684)
+.
T Consensus 126 L~ 127 (135)
T 2e7s_A 126 LK 127 (135)
T ss_dssp --
T ss_pred HH
Confidence 43
No 33
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.68 E-value=0.8 Score=39.82 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCC---CCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTFTL---VAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf~~---~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
-.+|+.|+|.--- ..++.++. +..||.+|.-++|.+.|+.++-.-+ .+.+ ...|++..+.. -
T Consensus 11 ~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l-----~~~~-----~~~n~~~af~~----a 76 (119)
T 2d89_A 11 SQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSL-----NPQD-----IKENNKKAYDG----F 76 (119)
T ss_dssp HHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGC-----CTTC-----SHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhh-----cccC-----HHHHHHHHHHH----H
Confidence 5689999996421 23455553 5779999999999999999864322 1222 45788777763 1
Q ss_pred HHhhcccccCccccchhHHhh--cCCHHHH
Q psy11659 88 QEYFDQALGEFGKVDVHKIVE--NIDAKEL 115 (684)
Q Consensus 88 ~~~l~~~~~~~~~pd~~~ia~--~~d~~el 115 (684)
+.||.+. +.|+.-|.. .||...+
T Consensus 77 -~~LGi~~----ll~peDi~~~~~pD~ksv 101 (119)
T 2d89_A 77 -ASIGISR----LLEPSDMVLLAIPDKLTV 101 (119)
T ss_dssp -HHHTCCC----CSCHHHHHHSSSCCHHHH
T ss_pred -HHhCCCc----ccCHHHHhccCCCcHHHH
Confidence 4578642 344554542 3555443
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.54 E-value=3.2 Score=34.24 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhh
Q psy11659 548 HLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKD 614 (684)
Q Consensus 548 ~~~~~~~~~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e 614 (684)
+..........+.....++.++..+... .|++|+.+.-.-...... +......|+.||.+++
T Consensus 35 l~eE~~~R~~aE~~~~~ie~ElEeLTas---LFeEAN~MVa~ar~e~~~--~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 35 IAKENELRTKAEEEADKLNKEVEDLTAS---LFDEANNMVADARKEKYA--IEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 3333455555666666666666654443 367777665554443332 4445666777776654
No 35
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=92.05 E-value=1.2 Score=38.47 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcC---CCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTFT---LVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf~---~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
-.+|+.|+|.-- ...++.++ .+..||.+|.-++|.+.|+.++-.-|. .. -...|++..+. .-
T Consensus 9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~-----~~-----~~~~n~~~af~----~A 74 (116)
T 1wyl_A 9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQ-----GL-----GALEATAWALK----VA 74 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSGG-----GC-----CHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHhc-----cC-----CHHHHHHHHHH----HH
Confidence 578999999641 13346665 368999999999999999998742221 11 23456665554 33
Q ss_pred HHhhcccccCccccchhHHhhcCCH
Q psy11659 88 QEYFDQALGEFGKVDVHKIVENIDA 112 (684)
Q Consensus 88 ~~~l~~~~~~~~~pd~~~ia~~~d~ 112 (684)
...+|.+. +.|+.-|...+|+
T Consensus 75 e~~lgi~~----lL~peD~~~~~d~ 95 (116)
T 1wyl_A 75 ENELGITP----VVSAQAVVAGSDP 95 (116)
T ss_dssp HHTTCCCC----CSCHHHHHHTSCH
T ss_pred HHHcCCcc----ccCHHHHhcCCch
Confidence 34578642 3455555543454
No 36
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=91.98 E-value=0.48 Score=42.27 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhc
Q psy11659 13 NILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFD 92 (684)
Q Consensus 13 ~~l~~W~~tf~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~ 92 (684)
..||.|||.+ +......+++|++|++..++++-|-|+ . .|.+++=++.. -.--++|+|.+=.. |. .++
T Consensus 9 ~eLL~WiN~~-L~~n~tkIE~l~sGAaYCQlmD~lfg~-i---~l~kVkf~a~~--e~e~i~NfKlLQ~~----F~-k~~ 76 (145)
T 4abo_I 9 QELLAWINQV-TSLGLTRIEDCGKGYAMIQIFDSIYQD-I---PLKKVNFECNN--EYQYINNWKVLQQV----FL-KKG 76 (145)
T ss_dssp HHHHHHHHHH-HTCCCCSGGGGGGSHHHHHHHHHHHCC-S---CTTTSCSSCCS--HHHHHHHHHHHHHH----HH-HHT
T ss_pred HHHHHHHHHH-cCCCcchHHHccccHHHHHHHHHHhcC-c---chhhcccCCCC--HHHHHHHHHHHHHH----HH-HcC
Confidence 4699999986 455688999999999999999999854 2 24555433322 12245566443322 21 123
Q ss_pred ccccCccccchhHHhhcCCHHHHHHHHHHHHH-HHhcCCC
Q psy11659 93 QALGEFGKVDVHKIVENIDAKELARLMQLILG-CAINCNR 131 (684)
Q Consensus 93 ~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~-~av~~~~ 131 (684)
. ...+||..+++ +...+=..+++.+-. +-.+++.
T Consensus 77 I----~k~ipV~kLvK-gk~QDNlEFlQWfkkf~d~n~~~ 111 (145)
T 4abo_I 77 I----DKVVDPERLSR-CKMQDNLEFVQWAKRFWDQYYPG 111 (145)
T ss_dssp C----CCCCCHHHHTT-TCHHHHHHHHHHHHHHHHHHCCS
T ss_pred C----CCccCHHHHhc-cchHhHHHHHHHHHHHHHhcCCC
Confidence 2 23477888887 555554444544432 2245544
No 37
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=91.71 E-value=0.67 Score=45.82 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=56.2
Q ss_pred HHHHHHHHhhc-C-C-CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF-T-L-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf-~-~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
..+|+.|+|.- . . ..++.++ .++.||.+|..++|.+.|..++-..+. +.+ ...|++..+.. -
T Consensus 135 ~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~-----~~~-----~~~n~~~a~~~----a 200 (245)
T 1sh5_A 135 KEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY-----RQT-----NLENLDQAFSV----A 200 (245)
T ss_dssp HHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH-----HSC-----HHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHHHcc-----cCC-----HHHHHHHHHHH----H
Confidence 46899999853 2 1 3456665 569999999999999999998854332 222 34677665543 3
Q ss_pred HHhhcccccCccccchhHHhh-cCCHHHHHHHH
Q psy11659 88 QEYFDQALGEFGKVDVHKIVE-NIDAKELARLM 119 (684)
Q Consensus 88 ~~~l~~~~~~~~~pd~~~ia~-~~d~~el~~ll 119 (684)
.+.+|.+. +.++.-|.. .||..-+...+
T Consensus 201 ~~~lGi~~----~l~peDi~~~~pd~k~i~tyv 229 (245)
T 1sh5_A 201 ERDLGVTR----LLDPEDVDVPQPDEKSIITYV 229 (245)
T ss_dssp HHHHCCCC----CCCHHHHSSSSCCHHHHHHHH
T ss_pred HHhCCCCc----cCCHHHhccCCCcHHHHHHHH
Confidence 34468652 244444543 45655444333
No 38
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=91.53 E-value=1.2 Score=39.35 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=53.4
Q ss_pred hHHHHHHHHhhcCC---CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659 11 LCNILLKWLQTFTL---VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY 86 (684)
Q Consensus 11 ~~~~l~~W~~tf~~---~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y 86 (684)
--.+|+.|+|.--- ..++.+| .+..||.+|.-++|.+.|+.++-.-| ++.+ ...|++..+..
T Consensus 8 ~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l-----~~~~-----~~~n~~~af~~---- 73 (128)
T 2d87_A 8 IKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQL-----SPQN-----RRQNFEVAFSS---- 73 (128)
T ss_dssp HHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTS-----CSSC-----HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHc-----CccC-----HHHHHHHHHHH----
Confidence 35789999996421 3346665 46799999999999999999864322 1222 34676665553
Q ss_pred HHHhhcccccCccccchhHHh--hcCCHHHH
Q psy11659 87 FQEYFDQALGEFGKVDVHKIV--ENIDAKEL 115 (684)
Q Consensus 87 ~~~~l~~~~~~~~~pd~~~ia--~~~d~~el 115 (684)
-...+|.+ .+.|+.-|+ ..||...+
T Consensus 74 Ae~~lgip----~lL~peD~v~~~~pD~ksv 100 (128)
T 2d87_A 74 AETHADCP----QLLDTEDMVRLREPDWKCV 100 (128)
T ss_dssp HHHHHCCC----CCSCHHHHHHSSSCCHHHH
T ss_pred HHHcCCCC----cccCHHHHhccCCccHHHH
Confidence 33446754 234555553 23555443
No 39
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=91.46 E-value=0.75 Score=45.46 Aligned_cols=92 Identities=16% Similarity=0.351 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHh
Q psy11659 12 CNILLKWLQTFTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEY 90 (684)
Q Consensus 12 ~~~l~~W~~tf~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~ 90 (684)
-.+|+.|+|.--...++.+| .++.||.+|..++|.+.|..+++ | ..+ ++.+ ...|++..+. .-.+.
T Consensus 145 ~~~LL~W~~~~~~~~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~-~-~~l--~~~~-----~~~n~~~a~~----~A~~~ 211 (245)
T 2wa7_A 145 KQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPD-W-ESW--DPQK-----PVDNAREAVQ----QADDW 211 (245)
T ss_dssp HHHHHHHHHHHSTTSCCCCSSGGGTTSHHHHHHHHHHSTTSSTT-G-GGS--CTTC-----HHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCcccchhhHHHHHHHHHHCcccccc-c-ccc--Cccc-----HHHHHHHHHH----HHHHh
Confidence 47899999974224567777 47999999999999999998742 1 111 1222 4567766554 33445
Q ss_pred hcccccCccccchhHHhh-cCCHHHHHHHHH
Q psy11659 91 FDQALGEFGKVDVHKIVE-NIDAKELARLMQ 120 (684)
Q Consensus 91 l~~~~~~~~~pd~~~ia~-~~d~~el~~ll~ 120 (684)
+|.+. +.++.-|+. +||..-+...+.
T Consensus 212 lGi~~----~l~peDi~~~~~d~ksi~tyvs 238 (245)
T 2wa7_A 212 LGVPQ----VITPEEIIHPDVDEHSVMTYLS 238 (245)
T ss_dssp SCCCC----SSCHHHHTCTTCCHHHHHHHHT
T ss_pred CCCCc----cCCHHHhccCCCcHHHHHHHHH
Confidence 78652 344455554 356554444443
No 40
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.42 E-value=2.5 Score=34.31 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 360 le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
++..+..+.+.+.++.+........|.++..++..++++.-.+..|..++++|.+.+.-|+
T Consensus 23 ~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 23 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444556777777777788888999999999999999888888888888888877654
No 41
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=91.21 E-value=0.62 Score=46.93 Aligned_cols=89 Identities=19% Similarity=0.124 Sum_probs=51.7
Q ss_pred HHHHHHHHhhc-C-CCCC-CCCcc-ccccHHHHHHHHHhhCCCcCChhHhh-hhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF-T-LVAP-HQSLA-DITDGVAMAQALHQIAPEWFSEMWLA-KIKTDIGANNWRLKISNLKKINEGIVDY 86 (684)
Q Consensus 12 ~~~l~~W~~tf-~-~~~~-~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~-~i~~~~~~~nw~l~~~Nl~~i~~~i~~y 86 (684)
..+|+.|+|.- . .+.+ +.+|. ++.||++|..++|.+.|.+.+..... -+.-++- +..-...|++.++...
T Consensus 170 ~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~--~~~~~~~n~~~a~~~A--- 244 (275)
T 1aoa_A 170 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGF--NETDDLKRAESMLQQA--- 244 (275)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTT--TCSSHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCC--CccCHHHHHHHHHHHH---
Confidence 46799999862 2 2222 78875 59999999999999999843210000 0000100 1122456777766533
Q ss_pred HHHhhcccccCccccchhHHhhcCCH
Q psy11659 87 FQEYFDQALGEFGKVDVHKIVENIDA 112 (684)
Q Consensus 87 ~~~~l~~~~~~~~~pd~~~ia~~~d~ 112 (684)
+.+|.+. +.++.-|+. +|+
T Consensus 245 --~~lGi~~----~l~peDi~~-~~~ 263 (275)
T 1aoa_A 245 --DKLGCRQ----FVTPADVVS-GNP 263 (275)
T ss_dssp --TTTTCCC----SCCHHHHHT-TCH
T ss_pred --HHcCCCC----cCCHHHcCC-CCh
Confidence 3477642 456666764 676
No 42
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.18 E-value=8.4 Score=34.84 Aligned_cols=8 Identities=25% Similarity=0.464 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy11659 288 ARYLKDEV 295 (684)
Q Consensus 288 ~~~L~del 295 (684)
+..|..++
T Consensus 44 ~~eLEeeL 51 (155)
T 2efr_A 44 SAELEEEL 51 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 43
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=91.01 E-value=1.8 Score=36.93 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcC--C-CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTFT--L-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf~--~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
-++|+.|+|.-- . ..++.++ .+..||.+|.-++|.+.|+.++-.-| ++.+ ...|++..+.. -
T Consensus 5 k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l-----~~~~-----~~~n~~~af~~----A 70 (109)
T 1bkr_A 5 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKL-----KKSN-----AHYNLQNAFNL----A 70 (109)
T ss_dssp HHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGC-----CTTC-----HHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHc-----CcCC-----HHHHHHHHHHH----H
Confidence 468999999542 1 2345555 56799999999999999998864322 1122 34666665543 3
Q ss_pred HHhhccc
Q psy11659 88 QEYFDQA 94 (684)
Q Consensus 88 ~~~l~~~ 94 (684)
.+.+|.+
T Consensus 71 e~~lgi~ 77 (109)
T 1bkr_A 71 EQHLGLT 77 (109)
T ss_dssp HHHHCCC
T ss_pred HHHcCCC
Confidence 3457864
No 44
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=90.53 E-value=0.84 Score=45.80 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=65.5
Q ss_pred HHHHHHHhhc--CCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHH
Q psy11659 13 NILLKWLQTF--TLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQE 89 (684)
Q Consensus 13 ~~l~~W~~tf--~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~ 89 (684)
.++..|||+. ....++.+ ++||.||++|..++..|-|.... .++...+. +-.-++.|+...+..+..
T Consensus 50 ktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~----~~~~~~p~--~r~~kleNv~~aL~~lk~---- 119 (272)
T 3hoc_A 50 NTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMH----RKHNQRPT--FRQMQLENVSVALEFLDR---- 119 (272)
T ss_dssp HHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCS----SCCCSSCC--SHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccc----cccCCCCc--cHHHHHHHHHHHHHHHHH----
Confidence 4799999996 44555666 58999999999999999987651 23332332 233577888888775542
Q ss_pred hhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHhcC
Q psy11659 90 YFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAINC 129 (684)
Q Consensus 90 ~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av~~ 129 (684)
.|..+.. +...-|.. +++.-+ +-+..|++...+..
T Consensus 120 -~gv~lvn---I~~~DIvd-Gn~kliLgLlW~Li~~~~i~~ 155 (272)
T 3hoc_A 120 -ESIKLVS---IDSKAIVD-GNLKLILGLIWTLILHYSISM 155 (272)
T ss_dssp -TTCCCSS---CCHHHHHT-TCHHHHHHHHHHHHHHHHTTC
T ss_pred -cCCcccc---cccchhhc-CCHHHHHHHHHHHHHHHhhhh
Confidence 4544322 33444554 565544 44556777776654
No 45
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=90.44 E-value=31 Score=40.19 Aligned_cols=90 Identities=22% Similarity=0.291 Sum_probs=54.7
Q ss_pred HHHHHHHHhhc-C-C-CCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF-T-L-VAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf-~-~-~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
..+|+.|+|.- . . ..++.+|. ++.||++|..++|.+.|..++-..+. +.+ ...|++..+.. -
T Consensus 123 ~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~-----~~~-----~~~n~~~a~~~----a 188 (863)
T 1sjj_A 123 KEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLR-----KDD-----PLTNLNTAFDV----A 188 (863)
T ss_dssp TTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGG-----SCC-----CGGGCTHHHHH----H
T ss_pred HHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCC-----CCC-----HHHHHHHHHHH----H
Confidence 34799999952 2 1 33566664 79999999999999999998754321 222 34566655543 3
Q ss_pred HHhhcccccCccccchhHHhh--cCCHHHHHHHH
Q psy11659 88 QEYFDQALGEFGKVDVHKIVE--NIDAKELARLM 119 (684)
Q Consensus 88 ~~~l~~~~~~~~~pd~~~ia~--~~d~~el~~ll 119 (684)
...+|.|. +.++.-|.. .||..-+...+
T Consensus 189 ~~~lg~~~----~l~~ed~~~~~~pd~~~~~~y~ 218 (863)
T 1sjj_A 189 EKYLDIPK----MLDAEDIVGTARPDEKAIMTYV 218 (863)
T ss_dssp HHHHCCCC----SCCHHHHTTCSSCCHHHHHHHH
T ss_pred HHhCCCCC----ccCHHHHhCCCCCcHHHHHHHH
Confidence 33468652 345555543 45554443333
No 46
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=90.38 E-value=0.64 Score=47.28 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=62.7
Q ss_pred hHHHHHHHHhhc--CCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 11 LCNILLKWLQTF--TLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 11 ~~~~l~~W~~tf--~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
....+..|+|+. ....++.+ ++||.||++|..++..|-|..++. ..+. +..-++.|+...++.+..
T Consensus 74 Qkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~--------~~~~-~r~~kleNvn~aL~~lk~-- 142 (296)
T 3f7p_A 74 QKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--------EKGR-MRFHKLQNVQIALDYLRH-- 142 (296)
T ss_dssp HHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--------CCCS-SHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcccc--------cCCc-ChhhhhhhHHHHHHHHHH--
Confidence 456899999987 23445665 688999999999999999987753 1222 334567788777765543
Q ss_pred HHhhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHh
Q psy11659 88 QEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAI 127 (684)
Q Consensus 88 ~~~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av 127 (684)
.|..+. -+...-|.. +++.-+ +-+.+|++...+
T Consensus 143 ---~gv~lv---~I~~~DIvd-Gn~kliLgLlW~Li~~~~i 176 (296)
T 3f7p_A 143 ---RQVKLV---NIRNDDIAD-GNPKLTLGLIWTIILHFQI 176 (296)
T ss_dssp ---TTCCCT---TCCHHHHHT-TCHHHHHHHHHHHHHHHTT
T ss_pred ---hCcccc---CCChhhhhc-cchHHHHHHHHHhhcccce
Confidence 454332 233344554 455544 444466665544
No 47
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=89.94 E-value=0.95 Score=45.00 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=64.2
Q ss_pred HhHHHHHHHHhhc--CCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659 10 ELCNILLKWLQTF--TLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY 86 (684)
Q Consensus 10 ~~~~~l~~W~~tf--~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y 86 (684)
.....+..|+|+. ....++.+ ++||.||++|.+++..|.|...+. ++ . +. +-.-++.|+...++.+..
T Consensus 27 ~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k-----~~-~-~~-~~~~~~eNi~~aL~~~k~- 97 (254)
T 1wku_A 27 QQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPR-----PD-K-GK-MRFHKIANVNKALDFIAS- 97 (254)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCC-----CC-S-CC-SHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCC-----CC-C-Cc-cHHHHHHhHHHHHHHHHH-
Confidence 3466899999987 34455555 589999999999999999976543 21 1 12 233556777777665543
Q ss_pred HHHhhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHhcC
Q psy11659 87 FQEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAINC 129 (684)
Q Consensus 87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av~~ 129 (684)
.|.++.. +...-|.+ +++.-+ +-+-+|+....+..
T Consensus 98 ----~gv~lv~---I~~~DIvd-G~~kliLgLlW~li~~~~i~~ 133 (254)
T 1wku_A 98 ----KGVKLVS---IGAEEIVD-GNLKMTLGMIWTIILRFAIQD 133 (254)
T ss_dssp ----TTCCCCS---CCHHHHHH-CCHHHHHHHHHHHHHHHHTTT
T ss_pred ----cCCCccC---CCHHHHhc-cchHHHHHHHHHHHHHHhhcc
Confidence 3543322 23444554 565544 44456666666543
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.91 E-value=6.4 Score=33.03 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11659 190 DQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSK 269 (684)
Q Consensus 190 d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~~~~~~~~~~~~~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~ 269 (684)
|.|..++...+..+..-+.+.+.+..++......+. .+.-|+.|++-++.....-..+++.+..+.++|..
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE---------~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ 97 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME---------TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHH
Confidence 334444444444444444444444444444333222 35567888887777666555556666666666666
Q ss_pred HHHHHHHHHH
Q psy11659 270 QMEDLELKLN 279 (684)
Q Consensus 270 el~~l~~k~~ 279 (684)
++..|+.++.
T Consensus 98 ql~~Lq~q~~ 107 (110)
T 2v4h_A 98 QLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 49
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=89.77 E-value=2.9 Score=36.19 Aligned_cols=73 Identities=26% Similarity=0.323 Sum_probs=47.4
Q ss_pred hHHhHHHHHHHHhhcCC---CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659 8 QSELCNILLKWLQTFTL---VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI 83 (684)
Q Consensus 8 ~~~~~~~l~~W~~tf~~---~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i 83 (684)
+..--.+|+.|+|.--- ..++.++ .+..||.+|.-++|.+.|+.++-.-+. ..+ ...|++..+.
T Consensus 6 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~-----~~~-----~~~n~~~af~-- 73 (118)
T 1bhd_A 6 QTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV-----KMS-----PIERLEHAFS-- 73 (118)
T ss_dssp CSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH-----HSC-----HHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhC-----cCC-----HHHHHHHHHH--
Confidence 33456789999996421 2346655 467899999999999999998754332 122 3456665554
Q ss_pred HHHHHHhhccc
Q psy11659 84 VDYFQEYFDQA 94 (684)
Q Consensus 84 ~~y~~~~l~~~ 94 (684)
.-.+.+|.+
T Consensus 74 --~Ae~~lgi~ 82 (118)
T 1bhd_A 74 --KAQTYLGIE 82 (118)
T ss_dssp --HHHHHHCCC
T ss_pred --HHHHHcCCC
Confidence 233467864
No 50
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=89.55 E-value=0.93 Score=44.80 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=63.8
Q ss_pred HhHHHHHHHHhhc--CCCCCCC-CccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659 10 ELCNILLKWLQTF--TLVAPHQ-SLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY 86 (684)
Q Consensus 10 ~~~~~l~~W~~tf--~~~~~~~-~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y 86 (684)
.....+..|+|+. ....++. =++||.||++|.+++..|.|.... .++...+.. . .-++.|+...++.+..
T Consensus 20 ~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~----~~~n~~~~~-~-~~~~eNv~~aL~~~k~- 92 (245)
T 2wa7_A 20 IQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY----RKYHQRPTF-R-QMQLENVSVALEFLDR- 92 (245)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS----SCCCSSCCS-H-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCc----hhcCCCCCc-H-HHHHHHHHHHHHHHHH-
Confidence 3456899999987 4444454 478999999999999999997652 233333322 2 2456787777765544
Q ss_pred HHHhhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHhc
Q psy11659 87 FQEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAIN 128 (684)
Q Consensus 87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av~ 128 (684)
.|.++.. +...-|.+ +++.-+ +-+-+|++...+.
T Consensus 93 ----~g~~lv~---I~~~DIvd-G~~kliLgLlW~li~~~~i~ 127 (245)
T 2wa7_A 93 ----ESIKLVS---IDSKAIVD-GNLKLILGLVWTLILHYSIS 127 (245)
T ss_dssp ----TTCCCCS---CCHHHHHT-TCHHHHHHHHHHHHHHHHTT
T ss_pred ----cCCcccC---CCHHHhhC-CCHHHHHHHHHHHHHHHccc
Confidence 3544322 23344554 455443 4455666665554
No 51
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.29 E-value=10 Score=32.78 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 369 ~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
+++.++.+.......++.++..++..+++..-.+-.|..++++|.+.+.-|+
T Consensus 52 dfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 52 RLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445556666666777666666666666666666666555443
No 52
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.08 E-value=8.5 Score=31.67 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 384 SEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 384 le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
.+.++..|+..+..+..++.++..+++.+...+..++
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888887777665
No 53
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=88.96 E-value=1.3 Score=46.15 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=66.2
Q ss_pred HHHHHHHHhhc--CCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF--TLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ 88 (684)
Q Consensus 12 ~~~l~~W~~tf--~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~ 88 (684)
...+..|+|+. ....++.++ .||.||++|..+|..|.+...+..+ ...+. +..-++.|+...++.+..
T Consensus 19 ~ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~----~~~p~--~r~~k~eNv~~al~~~~~--- 89 (347)
T 4b7l_A 19 QNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKY----HQRPT--FRQMQLENVSVALEFLDR--- 89 (347)
T ss_dssp HHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCC----CSSCC--SHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhh----cCCcc--cHHHHHHHHHHHHHHHHH---
Confidence 34799999986 456677774 7999999999999999987765321 11222 344567788777764432
Q ss_pred HhhcccccCccccchhHHhhcCCHHH-HHHHHHHHHHHHhcC
Q psy11659 89 EYFDQALGEFGKVDVHKIVENIDAKE-LARLMQLILGCAINC 129 (684)
Q Consensus 89 ~~l~~~~~~~~~pd~~~ia~~~d~~e-l~~ll~lvl~~av~~ 129 (684)
.|..+. -++..-|.. +++.- |+-+-+|++...+..
T Consensus 90 --~g~~lv---~i~~~DIvd-Gn~~liLgLiW~li~~~~i~~ 125 (347)
T 4b7l_A 90 --ESIKLV---SIDSKAIVD-GNLKLILGLVWTLILHYSISM 125 (347)
T ss_dssp --TTCCCS---SCCHHHHHT-TCHHHHHHHHHHHHHHHHTTS
T ss_pred --hccccC---CCCcchhhc-CCHhhHHHHHHHHHHHHhhhh
Confidence 354332 245555665 56655 455557777666653
No 54
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=88.89 E-value=0.56 Score=47.28 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHhhc-CC----------CCCCC-CccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcH
Q psy11659 9 SELCNILLKWLQTF-TL----------VAPHQ-SLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNL 76 (684)
Q Consensus 9 ~~~~~~l~~W~~tf-~~----------~~~~~-~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl 76 (684)
.+....+..|+|+. .- +..+. =++||.||++|.+++..+.|...+.. .++..+.. .| -++.|+
T Consensus 23 ~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~---~i~~~~~~-~~-~~~eNv 97 (275)
T 1aoa_A 23 EEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDER---AINKKKLT-PF-IIQENL 97 (275)
T ss_dssp HHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGG---GSCCSSCC-HH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCcc---ccCCCCCC-HH-HHHHHH
Confidence 35678999999985 21 11222 36899999999999999999876532 22222221 23 467788
Q ss_pred HHHHHHHH
Q psy11659 77 KKINEGIV 84 (684)
Q Consensus 77 ~~i~~~i~ 84 (684)
...++.+.
T Consensus 98 ~~aL~~~k 105 (275)
T 1aoa_A 98 NLALNSAS 105 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777554
No 55
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=88.47 E-value=3.2 Score=36.87 Aligned_cols=68 Identities=16% Similarity=0.386 Sum_probs=45.0
Q ss_pred HHhHHHHHHHHhhc-CCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659 9 SELCNILLKWLQTF-TLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV 84 (684)
Q Consensus 9 ~~~~~~l~~W~~tf-~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~ 84 (684)
.++...+..||++. ..+-+.+=.+.|.||++|.++++.|.|.... +|+... . +| ..+.|+...++...
T Consensus 16 ~~~~~e~~~WIe~~l~~~~~~~l~~~L~DGvvLCkL~N~l~P~~v~-----ki~~~~-~-~f-~~~eNI~~Fl~a~~ 84 (136)
T 1wyp_A 16 HQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVK-----KINEST-Q-NW-HQLENIGNFIKAIT 84 (136)
T ss_dssp HHHHHHHHHHHHHHTCCCCCSCTTHHHHTSHHHHHHHHHHSTTSSS-----CCCCSS-C-SH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHccHHhHHHHHHhhCCCCcc-----cccccc-c-ch-HHHHHHHHHHHHHH
Confidence 45778999999986 3333334457799999999999999997653 454332 2 44 23355555555443
No 56
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=88.46 E-value=3.7 Score=35.68 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHHhhcC---CCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659 13 NILLKWLQTFT---LVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ 88 (684)
Q Consensus 13 ~~l~~W~~tf~---~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~ 88 (684)
.+|+.|+|.-- ...++.+| .+..||.+|.-++|.+.|+.++-.-| ++.+ ...|++..+. .-.
T Consensus 12 ~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l-----~~~~-----~~~n~~~af~----~Ae 77 (121)
T 2d88_A 12 SKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSL-----DEQN-----VEKNNQLAFD----IAE 77 (121)
T ss_dssp CHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTS-----CTTC-----HHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHc-----CccC-----HHHHHHHHHH----HHH
Confidence 47999999642 13346665 35789999999999999998864322 1111 3466665554 333
Q ss_pred HhhcccccCccccchhHHhh--cCCHHHH
Q psy11659 89 EYFDQALGEFGKVDVHKIVE--NIDAKEL 115 (684)
Q Consensus 89 ~~l~~~~~~~~~pd~~~ia~--~~d~~el 115 (684)
+.||.+. +.|+.-|+. .||..-+
T Consensus 78 ~~lgi~~----lL~peD~~~~~~pD~ksi 102 (121)
T 2d88_A 78 KELGISP----IMTGKEMASVGEPDKLSM 102 (121)
T ss_dssp HHTCCCC----SSCHHHHHHSSCCCHHHH
T ss_pred HHcCCCC----cCCHHHHhccCCCcHHHH
Confidence 4578642 345555543 3555433
No 57
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=88.40 E-value=1.9 Score=43.19 Aligned_cols=87 Identities=20% Similarity=0.384 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHh
Q psy11659 12 CNILLKWLQTFTLVAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEY 90 (684)
Q Consensus 12 ~~~l~~W~~tf~~~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~ 90 (684)
-.+|+.|+|.--.+.++.+|. +..||.+|..++|.+.|..+++ | ..+ ++.+ ...|++..+. .-.+.
T Consensus 172 k~~LL~W~n~~~~~~~I~nFs~sw~DG~af~aLi~~~~P~li~d-~-~~l--~~~~-----~~~n~~~Af~----~Ae~~ 238 (272)
T 3hoc_A 172 KQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPD-W-DSW--DASK-----PVTNAREAMQ----QADDW 238 (272)
T ss_dssp HHHHHHHHHHHCTTSCCCCSSGGGTTSHHHHHHHHHHSTTSSTT-G-GGS--CTTC-----HHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHhhCCCCCCCChhhcccchHHHHHHHHHhCcccccc-h-hhc--CccC-----HHHHHHHHHH----HHHHh
Confidence 568999999632245677775 5899999999999999998842 1 111 1222 4567766554 33344
Q ss_pred hcccccCccccchhHHhh-cCCHHHH
Q psy11659 91 FDQALGEFGKVDVHKIVE-NIDAKEL 115 (684)
Q Consensus 91 l~~~~~~~~~pd~~~ia~-~~d~~el 115 (684)
+|.+. +.|+.-|.. .||+.-+
T Consensus 239 lGi~~----ll~peDiv~~~pD~ksi 260 (272)
T 3hoc_A 239 LGIPQ----VITPEEIVDPNVDKHSV 260 (272)
T ss_dssp HCCCC----SSCHHHHTCTTCCHHHH
T ss_pred CCCCc----cCCHHHhccCCCChHHH
Confidence 78652 344444544 3555443
No 58
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=87.94 E-value=2 Score=47.29 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=62.4
Q ss_pred HHHHHHHhh-cC---CCCCCCCcc--ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659 13 NILLKWLQT-FT---LVAPHQSLA--DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY 86 (684)
Q Consensus 13 ~~l~~W~~t-f~---~~~~~~~~~--dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y 86 (684)
.+|+.|+|. +. -..++.+|. ++.||++|..++|.+.|..++-.. +. +++ +-.-+..|++..+.--
T Consensus 400 ~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG~a~~aLi~~~~P~li~~~~---l~--~~~-s~~~~~~N~~~a~~~a--- 470 (506)
T 1pxy_A 400 ADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNL---VT--KGE-TDDEKRLNATYIVSVA--- 470 (506)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTS---CC--CSC-SHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhcCCccccCCCCcccccchHHHHHHHHhhCCCeeehhh---cc--cCC-CchhHHHHHHHHHHHH---
Confidence 589999994 22 245788896 899999999999999999886422 21 211 1123557777766522
Q ss_pred HHHhhcccccCccccchhHHhhcCCHHHHHHHHHHHHHH
Q psy11659 87 FQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGC 125 (684)
Q Consensus 87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~el~~ll~lvl~~ 125 (684)
+.+|.+. +.|+.-|.. +|+..+...+.-+...
T Consensus 471 --~~lGi~~----~l~peDi~~-~d~ksi~tyv~~l~~~ 502 (506)
T 1pxy_A 471 --RKLGCSV----FLLPEDIVE-VNQKMILILTASIMYW 502 (506)
T ss_dssp --HHHTCCC----CCCHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred --HHcCCCC----cCCHHHccC-CChhHHHHHHHHHHHH
Confidence 3478642 456666664 5776665555544443
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.87 E-value=11 Score=31.73 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 381 ADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414 (684)
Q Consensus 381 ~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e 414 (684)
+..++.+++.|..+|.++..++++++.+...+.-
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 5566677777777777777777666665554443
No 60
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.26 E-value=8.8 Score=32.22 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=10.8
Q ss_pred HHHHHHHhhchHHHHHHHHHHHH
Q psy11659 346 LEEELKKNGNWKSQVDMYKKQMS 368 (684)
Q Consensus 346 LEeel~~~~~~r~~le~~k~qi~ 368 (684)
..+.+..+.-++.+++-|+....
T Consensus 57 ~~~~lE~I~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 57 HKIVMETVPVLKAQADIYKADFQ 79 (110)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333444444555555555443
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.13 E-value=7.2 Score=31.15 Aligned_cols=56 Identities=18% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418 (684)
Q Consensus 363 ~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~e 418 (684)
....+..++..+.+...+....+.++..|+.++..++.++++....+......+++
T Consensus 18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 18 ALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555666666667777777777766666555554444443
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.83 E-value=19 Score=40.03 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
++.+++........+..+...+..++.+|
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444
No 63
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=86.71 E-value=2.3 Score=42.13 Aligned_cols=90 Identities=24% Similarity=0.331 Sum_probs=55.3
Q ss_pred HHHHHHHHhhc-C-C-CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF-T-L-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf-~-~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
..+|+.|+|.- . . ..++.+| .++.||.+|..++|.+.|..++-+.+ .+.+ ...|++.++. .-
T Consensus 142 ~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l-----~~~~-----~~~n~~~a~~----~A 207 (254)
T 1wku_A 142 KEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKL-----RKDD-----PIGNLNTAFE----VA 207 (254)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGC-----CTTC-----HHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCccccccc-----CcCC-----HHHHHHHHHH----HH
Confidence 46899999952 1 1 3356666 47999999999999999998864322 1222 3456665554 33
Q ss_pred HHhhcccccCccccchhHHhh--cCCHHHHHHHH
Q psy11659 88 QEYFDQALGEFGKVDVHKIVE--NIDAKELARLM 119 (684)
Q Consensus 88 ~~~l~~~~~~~~~pd~~~ia~--~~d~~el~~ll 119 (684)
.+.+|.+. +.++.-|.. .||..-+.-.+
T Consensus 208 ~~~lGi~~----~l~peDiv~~~~pD~k~imtyv 237 (254)
T 1wku_A 208 EKYLDIPK----MLDAEDIVNTPKPDEKAIMTYV 237 (254)
T ss_dssp HHHSCCCC----CSCHHHHHHSSSCCHHHHHHHH
T ss_pred HHHcCCCC----cCCHHHHhccCCCcHHHHHHHH
Confidence 44578652 344555533 35654443333
No 64
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=86.46 E-value=3.1 Score=45.81 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=54.8
Q ss_pred HHHHHHHHhhc-C---CCCCCCCcc-ccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF-T---LVAPHQSLA-DITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDY 86 (684)
Q Consensus 12 ~~~l~~W~~tf-~---~~~~~~~~~-dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y 86 (684)
..+|+.|+|.. . -..++.+|. |+.||++|.-++|.+.|..++-..+ ++.+ ...|++.++..
T Consensus 163 ~~~LL~W~n~~l~~~g~~~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~~l-----~~~~-----~~~n~~~a~~~---- 228 (513)
T 1rt8_A 163 EKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPL-----QTTD-----VLQRAEQVLQN---- 228 (513)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGG-----GCCC-----HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcCCCcCcccchhhhhccHHHHHHHHHHCccccccCCC-----CccC-----HHHHHHHHHHH----
Confidence 57899999953 2 224677776 6999999999999999998874221 1222 34677766663
Q ss_pred HHHhhcccccCccccchhHHhhcCCHH
Q psy11659 87 FQEYFDQALGEFGKVDVHKIVENIDAK 113 (684)
Q Consensus 87 ~~~~l~~~~~~~~~pd~~~ia~~~d~~ 113 (684)
-.+ +|.+ ++.++.-|.. +|+.
T Consensus 229 a~~-lgi~----~~l~peDi~~-~~~k 249 (513)
T 1rt8_A 229 AEK-LDCR----KYLTPTAMVA-GNPK 249 (513)
T ss_dssp HHT-TTCC----CSCCHHHHHT-TCHH
T ss_pred HHH-cCCC----ccCCHHHhcC-CCHH
Confidence 233 7864 2466666765 5663
No 65
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=86.44 E-value=1.1 Score=52.95 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=49.0
Q ss_pred HhHHHHHHHHhhc--CCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHH
Q psy11659 10 ELCNILLKWLQTF--TLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVD 85 (684)
Q Consensus 10 ~~~~~l~~W~~tf--~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~ 85 (684)
.-..++..|||+. ....++.+ +.||.||++|..++..|.|...+. ++ .+. +..-++.|+...+..+..
T Consensus 8 ~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~-----~~--~~~-~~~~~~eN~~~~l~~~~~ 78 (863)
T 1sjj_A 8 QQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAK-----PE--RGK-MRVHKISNVNKALDFIAS 78 (863)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCC-----SC--CCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeC-----CC--CCc-cHHHHHHHHHHHHHHHHH
Confidence 3456899999997 44556655 589999999999999999987653 11 122 344567788877775553
No 66
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=86.40 E-value=2.5 Score=37.06 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=47.1
Q ss_pred HhHHHHHHHHhhcC-CCC---CC---CCc--cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHH
Q psy11659 10 ELCNILLKWLQTFT-LVA---PH---QSL--ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKIN 80 (684)
Q Consensus 10 ~~~~~l~~W~~tf~-~~~---~~---~~~--~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~ 80 (684)
.....++.||+..- +.. |. .++ +-|-|||+|.++++.|.|...+ +|...+.. .| ..+.|+...+
T Consensus 12 ~~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~-----kI~~~~~~-~f-~~~eNI~~FL 84 (126)
T 2l3g_A 12 NSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE-----KVYPEPRS-ES-ECLSNIREFL 84 (126)
T ss_dssp CHHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCS-----CCCSSCCS-HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCC-----ccCCCCCc-ch-HHHHHHHHHH
Confidence 46788999999963 222 22 232 6677999999999999997665 45434433 34 3346777777
Q ss_pred HHHHHH
Q psy11659 81 EGIVDY 86 (684)
Q Consensus 81 ~~i~~y 86 (684)
+....|
T Consensus 85 ~a~~~~ 90 (126)
T 2l3g_A 85 RGCGAS 90 (126)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776664
No 67
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=86.37 E-value=1.9 Score=37.86 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=45.2
Q ss_pred HHHHHHHHhhc--CC-CCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF--TL-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf--~~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
-.+|+.|+|.- +. ..++.++ .+..||.+|.-++|.+.|+.++-.- + ...+ ...|++..+. .-
T Consensus 9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~---l--~~~~-----~~~n~~~af~----~A 74 (127)
T 1wyq_A 9 KDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFES---L--KKCN-----AHYNLQNAFN----LA 74 (127)
T ss_dssp THHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTT---S--CSSC-----CHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHH---h--CcCC-----HHHHHHHHHH----HH
Confidence 46799999953 11 3346655 5689999999999999999886432 2 1122 3456665554 33
Q ss_pred HHhhccc
Q psy11659 88 QEYFDQA 94 (684)
Q Consensus 88 ~~~l~~~ 94 (684)
.+.||.+
T Consensus 75 e~~Lgi~ 81 (127)
T 1wyq_A 75 EKELGLT 81 (127)
T ss_dssp HHTTCCC
T ss_pred HHHcCCC
Confidence 4567864
No 68
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=86.25 E-value=3 Score=35.44 Aligned_cols=66 Identities=18% Similarity=0.377 Sum_probs=42.6
Q ss_pred hHHHHHHHHhhc-CCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659 11 LCNILLKWLQTF-TLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV 84 (684)
Q Consensus 11 ~~~~l~~W~~tf-~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~ 84 (684)
....+..||++. +.+-+.+=.+.|.||++|.++++.|.|...+ +|+... . .| ..+.|+...++...
T Consensus 4 ~e~e~~~WIe~~l~~~~~~~l~~~L~dGvvLCkL~N~l~P~~v~-----ki~~~~-~-~f-~~~eNI~~Fl~a~~ 70 (108)
T 1h67_A 4 TERQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQ-----KVNDPV-Q-NW-HKLENIGNFLRAIK 70 (108)
T ss_dssp SSHHHHHHHHHHHSCCCCSCHHHHHHHCSHHHHHHHHHSTTSST-----TCCCTT-S-SH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc-----cccccc-c-ch-HHHHHHHHHHHHHH
Confidence 345689999976 4333333457799999999999999997654 354332 2 34 23355555555443
No 69
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=86.24 E-value=3.1 Score=37.50 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=43.6
Q ss_pred HhHHHHHHHHhhc-CCCCCCCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659 10 ELCNILLKWLQTF-TLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV 84 (684)
Q Consensus 10 ~~~~~l~~W~~tf-~~~~~~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~ 84 (684)
++...+..||++. ..+-+.+=.+.|.||++|.++++.|.|.... +|+... . .| ..+.|+...++...
T Consensus 17 ~~~~e~~~WIe~~l~~~i~~~l~~~L~DGvvLCkL~N~l~P~~v~-----kin~~~-~-~f-~~~eNI~~FL~a~~ 84 (146)
T 1wyn_A 17 QKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQPGSVP-----KINRSM-Q-NW-HQLENLSNFIKAMV 84 (146)
T ss_dssp THHHHHHHHHHHHHCCCCCSCHHHHHHTTSHHHHHHHHHCTTSCS-----CCCCSS-C-HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc-----cccccc-c-cc-cHHHHHHHHHHHHH
Confidence 4678999999976 3332333356799999999999999997653 454332 2 34 23345555555443
No 70
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=86.24 E-value=3.4 Score=41.85 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcC---CCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTFT---LVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYF 87 (684)
Q Consensus 12 ~~~l~~W~~tf~---~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~ 87 (684)
.++|+.|+|.-- ...++.+| .+..||.+|..++|.+.|..++-..+. +.+ ...|++..+. .-
T Consensus 191 k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~-----~~~-----~~~N~~~Af~----~A 256 (296)
T 3f7p_A 191 KEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVY-----RQT-----NLENLDQAFS----VA 256 (296)
T ss_dssp HHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHT-----TSC-----HHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcC-----ccc-----HHHHHHHHHH----HH
Confidence 568999999542 13456666 789999999999999999988754331 222 3457665544 33
Q ss_pred HHhhccc
Q psy11659 88 QEYFDQA 94 (684)
Q Consensus 88 ~~~l~~~ 94 (684)
...+|.+
T Consensus 257 e~~LGi~ 263 (296)
T 3f7p_A 257 ERDLGVT 263 (296)
T ss_dssp HHHHCCC
T ss_pred HHhCCCC
Confidence 3456764
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.05 E-value=5.6 Score=44.37 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHH
Q psy11659 531 QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQD 571 (684)
Q Consensus 531 ~~ele~~r~~l~~le~q~~~~~~~~~~l~~~L~~~e~el~~ 571 (684)
..+++.+++++..++.+.+....++.++..+......+++.
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 72
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=85.85 E-value=0.94 Score=49.89 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhcCCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659 11 LCNILLKWLQTFTLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI 83 (684)
Q Consensus 11 ~~~~l~~W~~tf~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i 83 (684)
....+..|+|+..++.++.+ ++||.||++|.+++..|.|...+.. .++..++.+.|. ++.|....++.+
T Consensus 277 q~ktf~~WiN~~~~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~---~~~~~~~~~r~~-~leNv~~aL~~~ 346 (506)
T 1pxy_A 277 DERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWK---HASKPPIKMPFR-KVENCNQVIKIG 346 (506)
T ss_dssp HHHHHHHHHTTTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGG---GCCCSSCCCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHhHHHHHHHHHHHcCCccccc---cccCCccccHHH-HHHHHHHHHHHH
Confidence 35579999999876656666 6899999999999999999866532 233333332343 667777666543
No 73
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=85.78 E-value=2.2 Score=37.15 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=46.1
Q ss_pred HhHHHHHHHHhhcC-CCC---CC---CC--ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHH
Q psy11659 10 ELCNILLKWLQTFT-LVA---PH---QS--LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKIN 80 (684)
Q Consensus 10 ~~~~~l~~W~~tf~-~~~---~~---~~--~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~ 80 (684)
+....++.||++.- +.. |. .+ .+.|.||++|.++++.|.|...+ +|...+.. .| ..+.|+...+
T Consensus 6 ~~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~-----ki~~~~~~-~f-~~~eNI~~FL 78 (121)
T 1wyr_A 6 SGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE-----KFCLDPQT-EA-DCINNINDFL 78 (121)
T ss_dssp CSHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS-----CCCSSCCS-HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC-----cCCCCCcc-hH-HHHHHHHHHH
Confidence 46778999999873 222 11 12 37788999999999999997654 45433332 34 3446666666
Q ss_pred HHHHHH
Q psy11659 81 EGIVDY 86 (684)
Q Consensus 81 ~~i~~y 86 (684)
+....|
T Consensus 79 ~a~~~~ 84 (121)
T 1wyr_A 79 KGCATL 84 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666554
No 74
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=85.54 E-value=0.9 Score=44.87 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=60.4
Q ss_pred HhHHHHHHHHhhcC-------CCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHH
Q psy11659 10 ELCNILLKWLQTFT-------LVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINE 81 (684)
Q Consensus 10 ~~~~~l~~W~~tf~-------~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~ 81 (684)
.....+..|+|+.- .+.++.+ ++||.||++|.+++..|.|...+. ..+. +..-++.|+...++
T Consensus 12 ~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~--------~~~~-~~~~~~eNv~~aL~ 82 (245)
T 1sh5_A 12 VQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR--------EKGR-MRFHKLQNVQIALD 82 (245)
T ss_dssp HHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC--------CCCC-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccC--------CCCc-chHHHHHhHHHHHH
Confidence 34568999999862 2334444 789999999999999999876542 1122 33446778877777
Q ss_pred HHHHHHHHhhcccccCccccchhHHhhcCCHHHH-HHHHHHHHHHHh
Q psy11659 82 GIVDYFQEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAI 127 (684)
Q Consensus 82 ~i~~y~~~~l~~~~~~~~~pd~~~ia~~~d~~el-~~ll~lvl~~av 127 (684)
.+.. .|..+.. +...-|.. +++.-+ +-+-+|+...-+
T Consensus 83 ~~k~-----~g~~l~~---I~~~DIvd-g~~k~iLgLlw~li~~~~i 120 (245)
T 1sh5_A 83 YLRH-----RQVKLVN---IRNDDIAD-GNPKLTLGLIWTIILHFQI 120 (245)
T ss_dssp HHHH-----TTCCCCS---CCHHHHHT-TCHHHHHHHHHHHHHHHTT
T ss_pred HHHH-----cCCcccC---CChHhhhc-ccHHHHHHHHHHHHHhhcc
Confidence 5544 3544322 23334544 455443 334455554444
No 75
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.44 E-value=9.6 Score=33.82 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=8.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q psy11659 381 ADKSEFENKKLQEKVTSLQREK 402 (684)
Q Consensus 381 ~~~le~e~~~L~~~l~~le~e~ 402 (684)
.+.+..++..++.++..++...
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333333
No 76
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=85.20 E-value=15 Score=33.01 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLI 406 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~ 406 (684)
+..+.|+........++..|+.+++.+ +.. ..+...++.+...++.-++.++.+..++....+.....|.
T Consensus 38 R~~k~lE~r~~~deEr~~~lE~qLkea---k~~-------aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLE 107 (147)
T 2b9c_A 38 RGMKVIESRAQKDEEKMEIQEIQLKEA---KHI-------AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE 107 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHH---HHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666777777777766 333 3355556666666666677777777777766666655555
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 407 VERDSLKETNEELK 420 (684)
Q Consensus 407 ~e~~~L~e~~~eL~ 420 (684)
.++...-..+..|+
T Consensus 108 eeL~~~~~nlKsLE 121 (147)
T 2b9c_A 108 EELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH
Confidence 55555544444443
No 77
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=85.11 E-value=4.4 Score=37.03 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=51.3
Q ss_pred HHHHHHHHhhc-CCCCC--CCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHH
Q psy11659 12 CNILLKWLQTF-TLVAP--HQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQ 88 (684)
Q Consensus 12 ~~~l~~W~~tf-~~~~~--~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~ 88 (684)
...+..||++. ...-| .+=.+-|.|||+|.++++.|.|.... +|...+.. .|. .+.|+...++...
T Consensus 13 ~~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~-----kI~~~~~~-~f~-~~eNI~~FL~a~~---- 81 (159)
T 1p2x_A 13 VDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI-----KIFYSNEL-QFR-HSDNINKFLDFIH---- 81 (159)
T ss_dssp HHHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC-----CCCCCSSC-CTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc-----ccccccCC-cch-HHHHHHHHHHHHH----
Confidence 36799999976 32222 12245699999999999999997642 45433333 452 3345554444443
Q ss_pred HhhcccccCccccchhHHhhcCCHHHHH
Q psy11659 89 EYFDQALGEFGKVDVHKIVENIDAKELA 116 (684)
Q Consensus 89 ~~l~~~~~~~~~pd~~~ia~~~d~~el~ 116 (684)
.+|.+.. .++...-+-+..+...+.
T Consensus 82 -~~Gv~~~--~lF~~~DL~e~kn~~~Vi 106 (159)
T 1p2x_A 82 -GIGLPEI--FHFELTDIYEGKNLPKVI 106 (159)
T ss_dssp -HTTCCGG--GCCCHHHHSSCSCHHHHH
T ss_pred -HcCCCcc--cccCHHHHHhcCCHHHHH
Confidence 2454322 233444454545544433
No 78
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=85.08 E-value=1.2 Score=49.12 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=48.1
Q ss_pred hHHHHHHHHhhcCCCCCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccC----CcchhhhhhcHHHHHHHHH
Q psy11659 11 LCNILLKWLQTFTLVAPHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIG----ANNWRLKISNLKKINEGIV 84 (684)
Q Consensus 11 ~~~~l~~W~~tf~~~~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~----~~nw~l~~~Nl~~i~~~i~ 84 (684)
....+..|+|+..+..++.+ ++||.||++|.+++..|-|..-+. .+++..|. . +-.-++.|+...++.+.
T Consensus 286 q~k~f~~WiN~~~~~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~---~~~~~~p~~~~~~-~r~~~~eNv~~al~~~~ 360 (513)
T 1rt8_A 286 EARVFTLWLNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNW---KKVNKAPASGDEM-MRFKAVENCNYAVDLGK 360 (513)
T ss_dssp HHHHHHHHHHHTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCG---GGSCCCCTTSCCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccCHHHHHhhHHHHHHHHHHhCCCCcch---hhhcCCccccccc-chHHHHHHHHHHHHHHH
Confidence 34579999999977767776 799999999999999888875432 23333221 1 22356667776666443
No 79
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=85.02 E-value=4.3 Score=39.92 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=46.2
Q ss_pred HHhHHHHHHHHhhcCC--C-CCCCC-ccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHH
Q psy11659 9 SELCNILLKWLQTFTL--V-APHQS-LADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIV 84 (684)
Q Consensus 9 ~~~~~~l~~W~~tf~~--~-~~~~~-~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~ 84 (684)
......+..|+|+.-. . .++.+ ++||.||++|.+++..|.|..++. + .+. +-.-++.|+...++.+.
T Consensus 15 ~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-----~---~~~-~~~~~~eNv~~aL~~~k 85 (246)
T 1dxx_A 15 DVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-----E---KGS-TRVHALNNVNKALRVLQ 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC-----C---CCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC-----C---CCc-cHHHHHHHHHHHHHHHH
Confidence 3456689999998631 2 24544 789999999999999999876642 1 122 22346677777776544
Q ss_pred H
Q psy11659 85 D 85 (684)
Q Consensus 85 ~ 85 (684)
.
T Consensus 86 ~ 86 (246)
T 1dxx_A 86 N 86 (246)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.76 E-value=22 Score=31.99 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=9.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Q psy11659 379 KRADKSEFENKKLQEKVTSLQRE 401 (684)
Q Consensus 379 ~~~~~le~e~~~L~~~l~~le~e 401 (684)
.....++..+..|+.++.+...-
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 81
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=84.54 E-value=3.3 Score=39.53 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhc-CCCCC--CCCccccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHH
Q psy11659 11 LCNILLKWLQTF-TLVAP--HQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGI 83 (684)
Q Consensus 11 ~~~~l~~W~~tf-~~~~~--~~~~~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i 83 (684)
....+..||+.+ ...-| .+=.+.|.|||+|.++++.|.|.... +|...+.. .| ..+.|+...++..
T Consensus 56 ~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~-----kI~~~s~~-~f-~~~eNI~~FL~ac 124 (203)
T 1p5s_A 56 RVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI-----KIFYSNEL-QF-RHSDNINKFLDFI 124 (203)
T ss_dssp HHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCC-----CCCCCSSS-CC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc-----cccCCCCC-cc-hHHHHHHHHHHHH
Confidence 457899999986 33222 12246699999999999999997652 45322333 44 2334554444443
No 82
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=84.23 E-value=3.8 Score=37.25 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=30.7
Q ss_pred HHhHHHHHHHHhhc-CCCCCC-----CC-ccccccHHHHHHHHHhhCC
Q psy11659 9 SELCNILLKWLQTF-TLVAPH-----QS-LADITDGVAMAQALHQIAP 49 (684)
Q Consensus 9 ~~~~~~l~~W~~tf-~~~~~~-----~~-~~dL~dG~~l~~vl~~idp 49 (684)
.++...+..||+.. ...-|. .+ .+-|.|||+|.++++.|.|
T Consensus 16 ~~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P 63 (155)
T 1wym_A 16 ADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYP 63 (155)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhcc
Confidence 46788999999976 322221 12 3558999999999999999
No 83
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.82 E-value=11 Score=40.35 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=46.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER---VTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQ 551 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l---~~~~~~~lk~kl~e~~~ele~~r~~l~~le~q~~~~ 551 (684)
.+|.+|..++++..+.....+.-.+.+...+..-+.+..+. ..+.+..|++++..+..++...-..+..|+.-+++.
T Consensus 64 krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888776666555555444433332222222222 122234566666666666666555666666444444
Q ss_pred HHHHHHHHHHHH
Q psy11659 552 GKLIEKLQDSIT 563 (684)
Q Consensus 552 ~~~~~~l~~~L~ 563 (684)
..++..|+-++.
T Consensus 144 ~~kIQRLEvDId 155 (562)
T 3ghg_A 144 LVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 84
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.78 E-value=40 Score=34.67 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=13.0
Q ss_pred cCChHHHHHHHHHHHHHHHHhh
Q psy11659 445 SVPITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 445 ~~~~~el~~~l~~Le~Enk~Lr 466 (684)
.+| .+.+..+.....|.+.|.
T Consensus 216 ~vP-~~fKsq~q~a~~Ew~al~ 236 (390)
T 1deq_A 216 PVP-REFKSQLQEAPLEWKALL 236 (390)
T ss_pred cCC-hhhcccccccchHHHHHH
Confidence 356 667766666666666554
No 85
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=82.74 E-value=5.3 Score=39.27 Aligned_cols=44 Identities=23% Similarity=0.420 Sum_probs=34.3
Q ss_pred HHHHHHHHhhc-C-C-CCCCCCc-cccccHHHHHHHHHhhCCCcCChh
Q psy11659 12 CNILLKWLQTF-T-L-VAPHQSL-ADITDGVAMAQALHQIAPEWFSEM 55 (684)
Q Consensus 12 ~~~l~~W~~tf-~-~-~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~ 55 (684)
..+|+.|+|.- . . ..++.+| .++.||.+|..++|.+.|..++-.
T Consensus 137 ~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~ 184 (246)
T 1dxx_A 137 EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWN 184 (246)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHH
T ss_pred HHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchh
Confidence 46899999942 2 1 3457776 469999999999999999988743
No 86
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.34 E-value=14 Score=39.64 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy11659 363 YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREK 402 (684)
Q Consensus 363 ~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~ 402 (684)
+++.+..|+.++......+..|+.-+..+..++..|+.++
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 87
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.12 E-value=18 Score=29.16 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11659 450 ELRQKLVRLTHENNML 465 (684)
Q Consensus 450 el~~~l~~Le~Enk~L 465 (684)
+|+.++..+..+|..|
T Consensus 4 eLr~qi~~l~~e~~~l 19 (86)
T 3swk_A 4 ELRRQVDQLTNDKARV 19 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH
Confidence 3444444444444443
No 88
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.36 E-value=24 Score=29.90 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11659 304 KVEKYEGIIETYKKKAEE 321 (684)
Q Consensus 304 ~~~k~e~~le~~k~klee 321 (684)
+..++..+++.||.|+..
T Consensus 11 ~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 11 DNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455667788888888764
No 89
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.04 E-value=28 Score=30.45 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11659 395 VTSLQREKEKLIVERDSLK 413 (684)
Q Consensus 395 l~~le~e~e~l~~e~~~L~ 413 (684)
...|-.-+-.|..++..++
T Consensus 107 Yq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 107 YKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 90
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.96 E-value=19 Score=28.59 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=11.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659 524 KVKIFELQNEIKNLKEQINHQQEEHLE 550 (684)
Q Consensus 524 k~kl~e~~~ele~~r~~l~~le~q~~~ 550 (684)
|+++.....+.+....++..++.++..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~ 31 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKA 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 91
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.78 E-value=13 Score=38.23 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11659 499 RKANQRILELEAELKER 515 (684)
Q Consensus 499 ~~l~~~i~eLq~qle~l 515 (684)
+.+..+|..|+..|..+
T Consensus 63 r~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45555666666666655
No 92
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.97 E-value=27 Score=29.62 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
.+..+..|...+++...++..|+..++.|
T Consensus 75 vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 75 VQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34444455555555555555555555444
No 93
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=79.93 E-value=33 Score=30.66 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=46.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h----HhHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11659 477 LNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTE--D----AAGMKVKIFELQNEIKNLKEQINHQQEEHLE 550 (684)
Q Consensus 477 l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~~~--~----~~~lk~kl~e~~~ele~~r~~l~~le~q~~~ 550 (684)
+.+.....++..+.+..|+..-.....++..|..++.+.+.. + ..-.-+++.-+..++++...+....+
T Consensus 26 Leeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE----- 100 (147)
T 2b9c_A 26 LEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE----- 100 (147)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333444445555555566666556666666666666665311 0 11112333344444444444444443
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q psy11659 551 QGKLIEKLQDSITQKDSEIQDYEE 574 (684)
Q Consensus 551 ~~~~~~~l~~~L~~~e~el~~~e~ 574 (684)
.++.+|...|+.+...|+.++.
T Consensus 101 --~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 101 --GKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhhHH
Confidence 5566666666666666665544
No 94
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=79.85 E-value=28 Score=29.86 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q psy11659 340 IQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFN 375 (684)
Q Consensus 340 ~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~ 375 (684)
...+.+||.+++.. -+-++.+...|.-|.+.+.
T Consensus 97 iRKLrELEADLKEK---DsMVe~LT~TiG~LrKELE 129 (167)
T 4gkw_A 97 MRKLGELEADLKEK---DSMVESLTETIGILRKELE 129 (167)
T ss_dssp HHHTHHHHHTHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhh---hHHHHHHHHHHHHHHHHHH
Confidence 34556666666655 4445555555555554433
No 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.77 E-value=30 Score=30.11 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11659 258 DDYRIKLEIQSKQMEDL 274 (684)
Q Consensus 258 ~~~~~~~~~le~el~~l 274 (684)
+.++.....|+..+.++
T Consensus 53 ~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 53 DNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 33333333333333333
No 96
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=79.72 E-value=3 Score=43.34 Aligned_cols=70 Identities=19% Similarity=0.367 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCCCCCCCc-cccccHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHh
Q psy11659 12 CNILLKWLQTFTLVAPHQSL-ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEY 90 (684)
Q Consensus 12 ~~~l~~W~~tf~~~~~~~~~-~dL~dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~ 90 (684)
-..|+.|+|.--...++.+| .+..||.+|..++|.+.|..+.+ | ..+ ++.+ ...|++..+.-- .+.
T Consensus 142 k~~LL~W~~~~~~~~~v~nF~~sw~DG~af~aLi~~~~P~~~~d-~-~~l--~~~~-----~~~n~~~Af~~A----e~~ 208 (347)
T 4b7l_A 142 KQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPD-W-ESW--DPQK-----PVDNAREAMQQA----DDW 208 (347)
T ss_dssp HHHHHHHHHHHCTTSCCCCSSGGGTTSHHHHHHHHHHSTTSSTT-G-GGS--CTTC-----HHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHhhCCCcccCCCCCCccchHHHHHHHHHhCCccccc-h-hhc--CcCC-----HHHHHHHHHHHH----HHh
Confidence 56799999963234556666 68899999999999999998843 1 111 2222 346776665433 344
Q ss_pred hccc
Q psy11659 91 FDQA 94 (684)
Q Consensus 91 l~~~ 94 (684)
||.+
T Consensus 209 lGip 212 (347)
T 4b7l_A 209 LGVP 212 (347)
T ss_dssp HCCC
T ss_pred cCCC
Confidence 6764
No 97
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.72 E-value=28 Score=31.02 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKL 391 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L 391 (684)
.+..|+.....+..++..++++++.. ...++.+..++..++-++.....+..+++.|+..|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK---~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALK---NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555554444 33334344444444444444444444444444433
No 98
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=78.87 E-value=5.4 Score=37.67 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHHHHhhc-CCCCCC--CCccccccHHHHHHHHHhhCCCcCC
Q psy11659 13 NILLKWLQTF-TLVAPH--QSLADITDGVAMAQALHQIAPEWFS 53 (684)
Q Consensus 13 ~~l~~W~~tf-~~~~~~--~~~~dL~dG~~l~~vl~~idp~~f~ 53 (684)
..+..||++. ...-|. .=.+-|.||++|.++++.|.|...+
T Consensus 50 ~e~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp 93 (193)
T 3i6x_A 50 EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVS 93 (193)
T ss_dssp HHHHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCC
Confidence 3689999986 322222 2246789999999999999997664
No 99
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=77.73 E-value=19 Score=29.42 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHH
Q psy11659 344 LDLEEELKKNGNWKSQVDMYKKQMS 368 (684)
Q Consensus 344 ~~LEeel~~~~~~r~~le~~k~qi~ 368 (684)
...+..+..+.-++.+++-|+....
T Consensus 33 ~q~~~~~E~i~vLk~Qv~IY~~DF~ 57 (94)
T 3jsv_C 33 EQHKIVMETVPVLKAQADIYKADFQ 57 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444555555554443
No 100
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.69 E-value=35 Score=29.68 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11659 396 TSLQREKEKLIVERDSL 412 (684)
Q Consensus 396 ~~le~e~e~l~~e~~~L 412 (684)
..|-.-+-.|..++..+
T Consensus 106 q~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 106 QELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444444443
No 101
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=77.35 E-value=16 Score=32.67 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=31.1
Q ss_pred HHhHHHHHHHHhhc-CCCCC-----CCC-ccccccHHHHHHHHHhhCCC
Q psy11659 9 SELCNILLKWLQTF-TLVAP-----HQS-LADITDGVAMAQALHQIAPE 50 (684)
Q Consensus 9 ~~~~~~l~~W~~tf-~~~~~-----~~~-~~dL~dG~~l~~vl~~idp~ 50 (684)
.++...+..||+.. ...-+ ..+ .+-|-|||+|.++++.|.|.
T Consensus 8 ~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~ 56 (144)
T 1ujo_A 8 EELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPE 56 (144)
T ss_dssp CHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcc
Confidence 45788999999975 32211 123 35599999999999999993
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=76.47 E-value=15 Score=31.65 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy11659 208 EEKSCLVEEKRRL 220 (684)
Q Consensus 208 ~e~~~l~~E~~~l 220 (684)
.+...|..+++.+
T Consensus 22 reie~lk~ele~l 34 (120)
T 3i00_A 22 REISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.20 E-value=93 Score=33.34 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 185 VIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRR 219 (684)
Q Consensus 185 ~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~ 219 (684)
...++..+.++-.+++..+...+........+...
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~ 392 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 33444455555666666666555555544444433
No 104
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=75.20 E-value=28 Score=28.35 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 236 NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLE 282 (684)
Q Consensus 236 ~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~~L~ 282 (684)
+..|+.|++-+++......+.++.+..+.++|..++..++.++..|.
T Consensus 42 i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777666656666666666666666666666665554
No 105
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.72 E-value=24 Score=27.97 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 286 GEARYLKDEVDILRETAEKV-EKYEGIIETYKKKAEELVDLKKQVK 330 (684)
Q Consensus 286 ~~~~~L~deld~lr~~~~~~-~k~e~~le~~k~kleel~~l~~~~~ 330 (684)
..++.++..++.-++.-..+ ..+...++.+--|+.++.+++..+.
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44445555555554433333 2333444455555555555554443
No 106
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=69.37 E-value=31 Score=27.25 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 394 KVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 394 ~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
++.+.+.....|..++..+++++++|
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444545444
No 107
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=68.92 E-value=45 Score=26.99 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 387 ENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 387 e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
++..|...+.+++...+++......|...+.++.
T Consensus 50 ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 50 QKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333355555555555555555555555543
No 108
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=68.51 E-value=39 Score=26.19 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy11659 450 ELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKAN 502 (684)
Q Consensus 450 el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~ 502 (684)
++-.++..++.+|..|. .++..++..+++.......+..+.+.+.
T Consensus 4 ~~~~kLq~~E~~N~~Le--------~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLE--------GQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887 8888888888887766666665555443
No 109
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=67.82 E-value=65 Score=33.94 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhchhhhhchhhHHHHHHHHHhHHhhhhhHHHHHHHHhh
Q psy11659 556 EKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK 626 (684)
Q Consensus 556 ~~l~~~L~~~e~el~~~e~r~k~~~e~ak~~i~~l~~~~~~~~~~~ei~~Lr~ql~e~e~~i~~LE~~~~~ 626 (684)
..+.+.++.........+..|..+.+..+.-|.-|+.+..+ .+ ..|..|+..+.+.-..|..||..+..
T Consensus 89 ~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~-qi-~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 89 VETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVAT-QV-NRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555555555555555544333 12 45777888888888888888887553
No 110
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.74 E-value=16 Score=28.23 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 236 NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKL 278 (684)
Q Consensus 236 ~~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~ 278 (684)
+..|+..+....+++...+..+.++...+.+.+.++.+|+.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665544444444444444444444444333
No 111
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=66.91 E-value=9.2 Score=35.97 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=30.0
Q ss_pred HHHHHHHhhc-CCCCCC-CC-ccccccHHHHHHHHHhhCCCcC
Q psy11659 13 NILLKWLQTF-TLVAPH-QS-LADITDGVAMAQALHQIAPEWF 52 (684)
Q Consensus 13 ~~l~~W~~tf-~~~~~~-~~-~~dL~dG~~l~~vl~~idp~~f 52 (684)
..+..||+.. ...-|. .+ .+-|-|||+|.++++.|.|...
T Consensus 28 ~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv 70 (190)
T 2rr8_A 28 EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVV 70 (190)
T ss_dssp HHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTS
T ss_pred HHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCc
Confidence 7899999987 332221 23 3558999999999999999754
No 112
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=66.84 E-value=22 Score=25.61 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=30.7
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 475 ~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.++.+++.++.....+...|...++....+|..|..+|+.+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556777777777777788888888888888888877764
No 113
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.22 E-value=48 Score=26.32 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11659 397 SLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 397 ~le~e~e~l~~e~~~L~e~~~ 417 (684)
.+..+..++..++...++++.
T Consensus 52 ~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 52 ELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 114
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=66.15 E-value=53 Score=26.82 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy11659 327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEK 394 (684)
Q Consensus 327 ~~~~~Le~~~~~l~~~~~~LEeel~~~~~~r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~ 394 (684)
.+|..|+..|..+..++..+...- . ..--..|...|.+|+..+........+++-++..+...
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~--~---~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~ 85 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQG--K---SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAED 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--C---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444333211 0 01112244555555555555544444444444433333
No 115
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.87 E-value=41 Score=27.89 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy11659 448 ITELRQKLVRLTHENNMLQ 466 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr 466 (684)
+..++.+|..|+.||..|+
T Consensus 14 ~~~lr~ei~~Le~E~~rLr 32 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLE 32 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666665
No 116
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.28 E-value=26 Score=27.26 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 181 ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRL 220 (684)
Q Consensus 181 ~l~~~~~e~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l 220 (684)
+-..++..+..+.---.+|-..+.+|+.++..|..|+..+
T Consensus 17 EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 17 ENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444555555555555555555666655555555544
No 117
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.29 E-value=1.6e+02 Score=31.30 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy11659 382 DKSEFENKKLQEKVTSLQ 399 (684)
Q Consensus 382 ~~le~e~~~L~~~l~~le 399 (684)
+.+|.++..+..+++++.
T Consensus 446 ~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 118
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.73 E-value=77 Score=27.19 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659 373 QFNEETKRADKSEFENKKLQEKVT 396 (684)
Q Consensus 373 ~l~e~~~~~~~le~e~~~L~~~l~ 396 (684)
.+.+...++...+..+.+|++...
T Consensus 93 ~~~e~E~kAqa~Eerf~KLKe~yt 116 (120)
T 3i00_A 93 SLSEIERKAQANEQRYSKLKEKYS 116 (120)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445544443
No 119
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.81 E-value=92 Score=27.76 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK 413 (684)
Q Consensus 357 r~~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~ 413 (684)
+.++..++..+.++...+.+..+-++.+..|+..|+-++..++....++..+...|-
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555554555555555555555555555444444444443
No 120
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.79 E-value=1.2e+02 Score=32.48 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=13.1
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHH
Q psy11659 602 ELKNLRKKNDDKDKMLDDLEKTL 624 (684)
Q Consensus 602 ei~~Lr~ql~e~e~~i~~LE~~~ 624 (684)
.|..|+..+.....+|..|+..+
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666665544
No 121
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=60.21 E-value=73 Score=26.40 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11659 402 KEKLIVERDSLKETNEELK 420 (684)
Q Consensus 402 ~e~l~~e~~~L~e~~~eL~ 420 (684)
.+++....+.|...+..++
T Consensus 60 ~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 60 FEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 122
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=58.92 E-value=74 Score=26.09 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
...+..++.....+...+..++.+....
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444433
No 123
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.26 E-value=84 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516 (684)
Q Consensus 479 ~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~ 516 (684)
-|+.+|-.+......-+.+..-.++-+..|..-+...+
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ek 66 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 66 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666666666665555543
No 124
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.21 E-value=72 Score=25.72 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy11659 288 ARYLKDEVDILRE 300 (684)
Q Consensus 288 ~~~L~deld~lr~ 300 (684)
+..+..++..++.
T Consensus 16 m~~~eeel~~lke 28 (89)
T 3bas_A 16 MKEQLKQMDKMKE 28 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 125
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.14 E-value=1.8e+02 Score=30.93 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 393 EKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 393 ~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
.++++++.+...+..++..++-.++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555544443
No 126
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=54.54 E-value=2.2e+02 Score=30.09 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhh
Q psy11659 638 FYNLALQKQRQTADNR 653 (684)
Q Consensus 638 ~y~~~~~~~~~~~~~r 653 (684)
|-.+|.-.|.+..+.|
T Consensus 450 ~de~g~~~~~~~~~~r 465 (491)
T 1m1j_A 450 SEQLGGVQHDQSAEDT 465 (491)
T ss_dssp ----------------
T ss_pred cccccchhcccccccc
Confidence 4445555565544444
No 127
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.12 E-value=74 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
..+++.++..|..+..++..++..+...
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666666655
No 128
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=51.54 E-value=52 Score=22.43 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 191 QMAQRCMELDMQVSMLQEEKSCLVEEKRRLEE 222 (684)
Q Consensus 191 ~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~ 222 (684)
+|..+..+++...++|.+..+-|+.||..|+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35556667777777777888888888887754
No 129
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.30 E-value=2.1e+02 Score=30.48 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=4.7
Q ss_pred HHHHHHHHHhHHH
Q psy11659 557 KLQDSITQKDSEI 569 (684)
Q Consensus 557 ~l~~~L~~~e~el 569 (684)
.++..+...+..+
T Consensus 453 ~~~~~~~~~~~~~ 465 (487)
T 3oja_A 453 RLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhh
Confidence 3333333333333
No 130
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=50.78 E-value=70 Score=27.48 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 476 KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 476 ~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
++.+-++.|+.+...+..|+...+.+.+++..+..+++++
T Consensus 10 ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~ 49 (130)
T 3cl3_D 10 ELQESQSRLEAATKECQALEGRARAASEQARQLESEREAL 49 (130)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344455566666666667666666666666666666664
No 131
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.58 E-value=82 Score=26.06 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 190 DQMAQRCMELDMQVSMLQEEKSCLVEEK 217 (684)
Q Consensus 190 d~l~~~~~el~~q~~~L~~e~~~l~~E~ 217 (684)
+.+..++..|++....|.+++..|..++
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445444444444444444444
No 132
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.16 E-value=1.2e+02 Score=24.88 Aligned_cols=12 Identities=33% Similarity=0.351 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy11659 337 LSYIQQTLDLEE 348 (684)
Q Consensus 337 ~~l~~~~~~LEe 348 (684)
..+...+..++.
T Consensus 21 ~~L~~eL~~lEk 32 (96)
T 3q8t_A 21 ERLIQELEDVEK 32 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 133
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.66 E-value=1.2e+02 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
..+++.++..|..+..++..++..+...
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s 39 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEA 39 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666655554
No 134
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.19 E-value=80 Score=34.03 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 282 EETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 282 ~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
..+..+.+.+..+++.++.....+++ ++..+++.-++...+..+++.+.++...+......+++++.
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk---~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQK---EIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666554433333 22222222223334444555555555544444444444443
No 135
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.42 E-value=39 Score=21.77 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 198 ELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 198 el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
.|+..+.+|-.++..|..|...|+.-+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455667777777888888887776544
No 136
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.28 E-value=98 Score=23.14 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 265 EIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR 299 (684)
Q Consensus 265 ~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr 299 (684)
..++.++..|..++..|. .++..|+.|+..|+
T Consensus 26 ~~le~~~~~L~~~N~~L~---~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 26 EALTGECKELEKKNEALK---ERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 334444444444444443 33444444444443
No 137
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=41.18 E-value=1.4e+02 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 390 KLQEKVTSLQREKEKLIVERDSLKET 415 (684)
Q Consensus 390 ~L~~~l~~le~e~e~l~~e~~~L~e~ 415 (684)
........|-.-|-+|..++..++.-
T Consensus 53 ~ql~EYq~LlnvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 53 QQLDEYQELLDIKLALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33334444444555555555555543
No 138
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.15 E-value=47 Score=21.44 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 196 CMELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 196 ~~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
...|+..+..|-.+++.|..|...|+.-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34455666777777777777777776544
No 139
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=40.97 E-value=1.6e+02 Score=24.63 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=13.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 380 RADKSEFENKKLQEKVTSLQREKEKL 405 (684)
Q Consensus 380 ~~~~le~e~~~L~~~l~~le~e~e~l 405 (684)
.++..+.+...+...+..+..+++.+
T Consensus 76 ~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 76 SLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555443
No 140
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=40.69 E-value=1.2e+02 Score=23.89 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 237 SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLN 279 (684)
Q Consensus 237 ~~L~~qleel~e~l~~~e~~~~~~~~~~~~le~el~~l~~k~~ 279 (684)
..+...+.+|+..++-.+..++++...+....+++..++.++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777776666655555555555444444444444443
No 141
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.49 E-value=62 Score=24.94 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 189 RDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEER 223 (684)
Q Consensus 189 ~d~l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~ 223 (684)
+..=..++.+|+.++..|......+..||..|+..
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888888888877777777766543
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.03 E-value=1.7e+02 Score=24.29 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 388 NKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 388 ~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
...+..++..+......+..++..+...+..+
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555544
No 143
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.83 E-value=51 Score=21.58 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659 196 CMELDMQVSMLQEEKSCLVEEKRRLEERFQ 225 (684)
Q Consensus 196 ~~el~~q~~~L~~e~~~l~~E~~~l~~~~~ 225 (684)
...|+..|.+|-.++..|..|...|+.-+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 344556677777777777777777766554
No 144
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.82 E-value=1.4e+02 Score=23.47 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEELKK 352 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEeel~~ 352 (684)
-..++.|..+...+..+....|..++.
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444344444443333
No 145
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=38.80 E-value=1.9e+02 Score=24.85 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE 514 (684)
Q Consensus 449 ~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~ 514 (684)
.+|...+..+.++...-+ .++...-..|.+....+..|.+.+..-..++..|++.+..
T Consensus 14 a~L~~D~~s~~~eleEnq--------eEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~ 71 (167)
T 4gkw_A 14 ADLKQDTESLQKQLEENQ--------EELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGT 71 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 666666666666555544 4444455556666666666666665555666666554444
No 146
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.12 E-value=57 Score=21.03 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 196 CMELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 196 ~~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
...|+..+..|-.++..|..|...++.-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455566677777777777777776544
No 147
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.82 E-value=2.5e+02 Score=30.38 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 282 EETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKA--------EELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 282 ~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kl--------eel~~l~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
..+..+.+.+..+++.++.....+++. +...++.- ++...+..+++.+.++.+.+......+++++.
T Consensus 73 ~~ld~~~r~~~~~~~~l~~~rn~~sk~---i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 73 ISTWQELRQLREQIRSLEEEKEAVTEA---VRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666665543333332 22222111 13334445555555555555555555555443
No 148
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.50 E-value=84 Score=33.64 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 280 SLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 280 ~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
.+..+..+.+.+..+++.++.....+++. +...++.-++...+..+++.+.++.+.+......+++++.
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~---i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVE---IGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666665544333322 2222222123334444445444444444444444444443
No 149
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.29 E-value=1e+02 Score=24.24 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 326 KKQVKQLESKNLSYIQQTLDLEEE 349 (684)
Q Consensus 326 ~~~~~~Le~~~~~l~~~~~~LEee 349 (684)
..++..|+.+.+.....+..|...
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~ 36 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEA 36 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444444433
No 150
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=37.18 E-value=4.1e+02 Score=28.34 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11659 258 DDYRIKLEIQSKQMEDLELKLN 279 (684)
Q Consensus 258 ~~~~~~~~~le~el~~l~~k~~ 279 (684)
.+++.++...++++..++..+.
T Consensus 5 a~yq~~la~yq~elarvqkana 26 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANA 26 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544
No 151
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.94 E-value=67 Score=24.13 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 192 MAQRCMELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 192 l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
=..++.+|+.++..|..+...|..++..|+..+
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888877777777777776544
No 152
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.62 E-value=1.2e+02 Score=21.82 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=5.8
Q ss_pred hhhHHHHHHHHHHHHH
Q psy11659 382 DKSEFENKKLQEKVTS 397 (684)
Q Consensus 382 ~~le~e~~~L~~~l~~ 397 (684)
.+|...++..+.+|..
T Consensus 26 ~rL~~~L~~AR~el~~ 41 (51)
T 3m91_A 26 SKLMETLKEARQQLLA 41 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 153
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.74 E-value=35 Score=22.34 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11659 198 ELDMQVSMLQEEKSCLVEEKRRLEERFQ 225 (684)
Q Consensus 198 el~~q~~~L~~e~~~l~~E~~~l~~~~~ 225 (684)
.|+..|..|-.++..|..|...|+.-+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4555566666667777777766665443
No 154
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=35.61 E-value=1.8e+02 Score=23.75 Aligned_cols=9 Identities=0% Similarity=-0.034 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy11659 292 KDEVDILRE 300 (684)
Q Consensus 292 ~deld~lr~ 300 (684)
.+.++.+..
T Consensus 8 ~~~l~el~~ 16 (118)
T 3uul_A 8 QIALEEVLT 16 (118)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333443333
No 155
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.51 E-value=1.2e+02 Score=23.37 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11659 395 VTSLQREKEKLIVERDSLKE 414 (684)
Q Consensus 395 l~~le~e~e~l~~e~~~L~e 414 (684)
+..++.+++....++..|+.
T Consensus 42 I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 156
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.44 E-value=1.9e+02 Score=23.92 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 483 KLDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 483 ~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
.+++.......|......+..++..+...+..+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555666666666666665
No 157
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=35.27 E-value=62 Score=20.91 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 196 CMELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 196 ~~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
...|+..|.+|-.++..|..|...|+.-+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34455566777777777777777776544
No 158
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.96 E-value=1.1e+02 Score=22.77 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 195 RCMELDMQVSMLQEEKSCLVEEKRR 219 (684)
Q Consensus 195 ~~~el~~q~~~L~~e~~~l~~E~~~ 219 (684)
.+.+|......|..+...|..|+..
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 159
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=34.85 E-value=1.5e+02 Score=32.72 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCC-CC------CCCCc----cccccHHHHHHHHHhhCCCcCC
Q psy11659 12 CNILLKWLQTFTL-VA------PHQSL----ADITDGVAMAQALHQIAPEWFS 53 (684)
Q Consensus 12 ~~~l~~W~~tf~~-~~------~~~~~----~dL~dG~~l~~vl~~idp~~f~ 53 (684)
--....|++.+.+ +. |..++ +-|-||++|.++++.|.|..-+
T Consensus 7 w~~~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~ 59 (587)
T 3ky9_A 7 WRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAIN 59 (587)
T ss_dssp HHHHHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSC
T ss_pred HHHHHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCC
Confidence 3457889998742 22 12222 4578999999999999997753
No 160
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=33.84 E-value=74 Score=20.41 Aligned_cols=27 Identities=4% Similarity=0.142 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 198 ELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 198 el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
.|+..+.+|-.++..|..|...++.-+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355566667777777777777776544
No 161
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=33.73 E-value=1.8e+02 Score=23.15 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 257 RDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAE 320 (684)
Q Consensus 257 ~~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kle 320 (684)
..++...+..++.++..++..+.. ..+.+++=++ -.-.++.++..|++-++
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~------ql~EYq~Lln-------vK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQ------QLDEYQELLD-------IKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-------HHHhhHHHHHHHHHHHc
Confidence 455555555555555555544331 1222222222 22466778888887766
No 162
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.46 E-value=1.8e+02 Score=23.69 Aligned_cols=7 Identities=29% Similarity=0.221 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy11659 405 LIVERDS 411 (684)
Q Consensus 405 l~~e~~~ 411 (684)
+..++..
T Consensus 77 Le~EIat 83 (95)
T 3mov_A 77 LDMEISA 83 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 163
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=33.36 E-value=77 Score=23.05 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 192 MAQRCMELDMQVSMLQEEKSCLVEEKRRLEER 223 (684)
Q Consensus 192 l~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~ 223 (684)
-...+.+|+.++..|..+...|..++..++..
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888777777777776543
No 164
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=33.31 E-value=1.9e+02 Score=23.35 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 381 ADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 381 ~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL 419 (684)
...|+.++..|..+++.|..+..++..+++.++..++.|
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777777777777777666543
No 165
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.74 E-value=1.1e+02 Score=32.26 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAEL 512 (684)
Q Consensus 448 ~~el~~~l~~Le~Enk~Lr~~~~~~~~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~ql 512 (684)
+..+.+++..|+.++..|. ..+..++..+.+.......-+...+++..++.+++..|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALK--------EKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3677888888888888887 77777888888777777777777777777777766543
No 166
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.41 E-value=1.8e+02 Score=22.84 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 321 ELVDLKKQVKQLESKNLSYIQQTLDLEE 348 (684)
Q Consensus 321 el~~l~~~~~~Le~~~~~l~~~~~~LEe 348 (684)
++.+|+-+|.+++.....|...+..-.+
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~ 54 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKA 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344444444444444444444333333
No 167
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.35 E-value=80 Score=20.26 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 197 MELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 197 ~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
..|+..|.+|..++..|..|...++.-+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455567777777777887877776544
No 168
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.18 E-value=1.5e+02 Score=21.80 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 321 ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 321 el~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
.+..+..++..|+..|..+..++..|..++..+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777776666666666665554443
No 169
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.90 E-value=1.9e+02 Score=22.86 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11659 394 KVTSLQREKEKLIVERDSLK 413 (684)
Q Consensus 394 ~l~~le~e~e~l~~e~~~L~ 413 (684)
....|-.-|-.|..++..++
T Consensus 55 EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 55 EYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 33344444444444554444
No 170
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=31.89 E-value=45 Score=20.23 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhh
Q psy11659 451 LRQKLVRLTHENNMLQ 466 (684)
Q Consensus 451 l~~~l~~Le~Enk~Lr 466 (684)
+..-+..|+.||+.|+
T Consensus 4 lnallasleaenkqlk 19 (31)
T 1p9i_A 4 LNALLASLEAENKQLK 19 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455667788888887
No 171
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.60 E-value=63 Score=31.41 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccc---h-----hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 451 LRQKLVRLTHENNMLQMNQKDD---I-----EGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516 (684)
Q Consensus 451 l~~~l~~Le~Enk~Lr~~~~~~---~-----~~~l~~L~~~Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l~ 516 (684)
...++..|+.|...|+.+.... . ..++..|+.++.....+...|....+.+..++..|+.+++.+.
T Consensus 22 ~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 22 DAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555666666555333211 1 2356677888888877778888888888888888888888873
No 172
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.60 E-value=1.5e+02 Score=21.42 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 262 IKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEK 307 (684)
Q Consensus 262 ~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld~lr~~~~~~~k 307 (684)
.++.+|..++..|..+++.|. ..+..++.++...+..+.+...
T Consensus 4 aki~~Lss~V~~L~~kVdqLs---sdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQAS---NDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 173
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.17 E-value=2e+02 Score=22.85 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy11659 383 KSEFENKKLQEKVTSLQREK 402 (684)
Q Consensus 383 ~le~e~~~L~~~l~~le~e~ 402 (684)
.+..++..|+..++.+..++
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l 50 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQL 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33334444444444444333
No 174
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.29 E-value=38 Score=24.57 Aligned_cols=12 Identities=17% Similarity=0.091 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhh
Q psy11659 455 LVRLTHENNMLQ 466 (684)
Q Consensus 455 l~~Le~Enk~Lr 466 (684)
+..|..||..|+
T Consensus 21 ~eaLk~E~~eLk 32 (53)
T 2yy0_A 21 IELLRLELAEMK 32 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555555
No 175
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.27 E-value=2.2e+02 Score=23.15 Aligned_cols=20 Identities=5% Similarity=0.172 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11659 400 REKEKLIVERDSLKETNEEL 419 (684)
Q Consensus 400 ~e~e~l~~e~~~L~e~~~eL 419 (684)
.....+......++..+.++
T Consensus 79 ~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 176
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.40 E-value=77 Score=20.50 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 197 MELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 197 ~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
..|+..+..|-.++..|..|...++.-+
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3455566677777777877777776543
No 177
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.36 E-value=5.4e+02 Score=27.34 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy11659 271 MEDLELKL 278 (684)
Q Consensus 271 l~~l~~k~ 278 (684)
+.+|+..+
T Consensus 102 LqeLe~~l 109 (464)
T 1m1j_B 102 LRDLKDRV 109 (464)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 178
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.21 E-value=2.4e+02 Score=23.29 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 484 LDDVTQQVKMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 484 Le~~~~~~~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
+...+.....+......+...+.++..-++++
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444455555544454
No 179
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.89 E-value=2.9e+02 Score=29.61 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy11659 286 GEARYLKDEVDILRE 300 (684)
Q Consensus 286 ~~~~~L~deld~lr~ 300 (684)
.+.+.+..+++.++.
T Consensus 44 ~~~r~~~~~~~~l~~ 58 (484)
T 3lss_A 44 KKWRRTQFLTEASKK 58 (484)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 180
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.58 E-value=2.5e+02 Score=23.22 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEK 210 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~ 210 (684)
....+.+++..+..++..+..++
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~ 36 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLEL 36 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 181
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.51 E-value=1.4e+02 Score=22.03 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 318 KAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 318 kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
|.+.+.++...+..|+..|..+..++..|..++..+
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777888888777777777777665554
No 182
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.22 E-value=1.4e+02 Score=31.40 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 366 QMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 366 qi~~l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
++..++.+..+....+..++.++..+.+++.. ....+..|...+.+++
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIK-------EETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcC
Confidence 33333333333333333334444444444433 3334455555566664
No 183
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.04 E-value=2.2e+02 Score=22.35 Aligned_cols=31 Identities=39% Similarity=0.471 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 390 KLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 390 ~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
+|..-+..++.+...+...+..|+.+.++|.
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666777777777765
No 184
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.59 E-value=1.1e+02 Score=19.74 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 197 MELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 197 ~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
..++..+.+|-.++..|..|...++.-+
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455566667777777777777665544
No 185
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.14 E-value=99 Score=20.01 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 197 MELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 197 ~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
..|+..+..|-.++..|..|...++.-+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455566667777777777777776544
No 186
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.79 E-value=2.7e+02 Score=23.18 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 391 LQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 391 L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
|...+..+....+.+..+|+.+..+++..+
T Consensus 23 L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 23 LNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455556777777666554
No 187
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.44 E-value=1.7e+02 Score=20.66 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy11659 359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQE 393 (684)
Q Consensus 359 ~le~~k~qi~~l~~~l~e~~~~~~~le~e~~~L~~ 393 (684)
+++.++.+...|.+++..-+..+.++|.+-..+++
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 34444444444554455545555555544443333
No 188
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.43 E-value=2.4e+02 Score=22.31 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 258 DDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEV 295 (684)
Q Consensus 258 ~~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~del 295 (684)
.++...++.++.++..++..+..|..++..++.|-+=+
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i 78 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666555554433
No 189
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.41 E-value=5.7e+02 Score=26.66 Aligned_cols=37 Identities=14% Similarity=0.008 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 384 SEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420 (684)
Q Consensus 384 le~e~~~L~~~l~~le~e~e~l~~e~~~L~e~~~eL~ 420 (684)
++.........+..|+..+..+...++.|+..+..|.
T Consensus 96 ~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 96 YENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333444444555444445555666666666664
No 190
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.28 E-value=2.4e+02 Score=22.19 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 259 DYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVD 296 (684)
Q Consensus 259 ~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld 296 (684)
.+...++.+..++..++.++..|...+..++.|-+-++
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~ 75 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIE 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666655555555544443
No 191
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.15 E-value=1.4e+02 Score=23.99 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=13.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11659 380 RADKSEFENKKLQEKVTSLQREKEKL 405 (684)
Q Consensus 380 ~~~~le~e~~~L~~~l~~le~e~e~l 405 (684)
++..|+.++..|+.++..|..++..|
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544433
No 192
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=25.83 E-value=2.5e+02 Score=22.37 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy11659 391 LQEKVTSLQRE 401 (684)
Q Consensus 391 L~~~l~~le~e 401 (684)
|..++...+++
T Consensus 72 LE~RLsKtEKD 82 (101)
T 1d7m_A 72 LEARLAKTEKD 82 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhhH
Confidence 44444444433
No 193
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.68 E-value=91 Score=18.49 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy11659 382 DKSEFENKKLQEKVTSLQRE 401 (684)
Q Consensus 382 ~~le~e~~~L~~~l~~le~e 401 (684)
+.+++++..|..++..+...
T Consensus 3 dalefendaleqkiaalkqk 22 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQK 22 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHH
Confidence 45667776666666655543
No 194
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.33 E-value=4.1e+02 Score=24.72 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 259 DYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVD 296 (684)
Q Consensus 259 ~~~~~~~~le~el~~l~~k~~~L~~~a~~~~~L~deld 296 (684)
++...++.++.++..++.++..|..++..++.|-+=++
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~ 156 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIE 156 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544444444443333
No 195
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=25.21 E-value=2e+02 Score=21.07 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 370 LYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412 (684)
Q Consensus 370 l~~~l~e~~~~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L 412 (684)
+++.+.....++..+-+-+..+.+++.-+++.+..+..+...|
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 3334444444444455555555555555555555444444433
No 196
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.04 E-value=2.6e+02 Score=22.22 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhhcCC-CccccchHHHHHHHHHHHHHHH
Q psy11659 210 KSCLVEEKRRLEERFQENFV-EPTNKGNSSMRRQMDALKEELF 251 (684)
Q Consensus 210 ~~~l~~E~~~l~~~~~~~~~-~~~~~~~~~L~~qleel~e~l~ 251 (684)
...|..++..+...+.+++- +....++..+..++..+...|.
T Consensus 31 Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 31 LEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445544431 1111233344444444444443
No 197
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=24.95 E-value=88 Score=20.47 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 331 QLESKNLSYIQQTLDLEEELKKN 353 (684)
Q Consensus 331 ~Le~~~~~l~~~~~~LEeel~~~ 353 (684)
+|+++...+...+..|+.+..++
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444433
No 198
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.78 E-value=2.8e+02 Score=22.58 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 392 QEKVTSLQREKEKLIVERDSLKETNE 417 (684)
Q Consensus 392 ~~~l~~le~e~e~l~~e~~~L~e~~~ 417 (684)
-.++..|+.++++|..+...|...++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777666666654443
No 199
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.73 E-value=1.9e+02 Score=21.31 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11659 193 AQRCMELDMQVSMLQEEKSCLVEEKRRLEERF 224 (684)
Q Consensus 193 ~~~~~el~~q~~~L~~e~~~l~~E~~~l~~~~ 224 (684)
.+++.+|+..+..|..+...|..++..|...+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666665554443
No 200
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.47 E-value=1.9e+02 Score=20.45 Aligned_cols=21 Identities=38% Similarity=0.262 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11659 197 MELDMQVSMLQEEKSCLVEEK 217 (684)
Q Consensus 197 ~el~~q~~~L~~e~~~l~~E~ 217 (684)
+.|-+|++.|..|...|..|+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 334444444444444443333
No 201
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.23 E-value=2.9e+02 Score=22.43 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 492 KMKTLENRKANQRILELEAELKER 515 (684)
Q Consensus 492 ~~Le~~~~~l~~~i~eLq~qle~l 515 (684)
..+......+..++.++..-+.++
T Consensus 18 ~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 18 QAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444
No 202
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.18 E-value=2.6e+02 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 384 SEFENKKLQEKVTSLQREKEKLIV 407 (684)
Q Consensus 384 le~e~~~L~~~l~~le~e~e~l~~ 407 (684)
++.-+.++..+-..++...+.+..
T Consensus 44 L~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 44 LEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443333
No 203
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.83 E-value=3e+02 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q psy11659 373 QFNEETKRADKSEFENKKLQEKVT 396 (684)
Q Consensus 373 ~l~e~~~~~~~le~e~~~L~~~l~ 396 (684)
.+.+...+++.|..+..+++.-|.
T Consensus 63 ~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433333
No 204
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.79 E-value=2.7e+02 Score=21.94 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 307 KYEGIIETYKKKAE 320 (684)
Q Consensus 307 k~e~~le~~k~kle 320 (684)
.++.++..|++-++
T Consensus 65 ~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 65 ALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHc
Confidence 45566666666654
No 205
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.50 E-value=1.5e+02 Score=21.41 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy11659 532 NEIKNLKEQINHQQEEHLEQGKLIEKLQDS 561 (684)
Q Consensus 532 ~ele~~r~~l~~le~q~~~~~~~~~~l~~~ 561 (684)
.+++.++...++|+.++..+.....++...
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444444444444433
No 206
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.20 E-value=2.5e+02 Score=22.44 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 287 EARYLKDEVDILRE 300 (684)
Q Consensus 287 ~~~~L~deld~lr~ 300 (684)
++..|+.++..|+.
T Consensus 58 ~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 58 KVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 207
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.16 E-value=2.2e+02 Score=20.60 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 284 TAGEARYLKDEVDILRETAEKVE 306 (684)
Q Consensus 284 ~a~~~~~L~deld~lr~~~~~~~ 306 (684)
+..-+-.|+|++..|+....++.
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~ 30 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMK 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788877766444443
No 208
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.51 E-value=90 Score=30.33 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHH
Q psy11659 236 NSSMRRQMDALKEEL 250 (684)
Q Consensus 236 ~~~L~~qleel~e~l 250 (684)
+..++.++..+...+
T Consensus 56 l~eL~~ql~~L~arN 70 (251)
T 3m9b_A 56 IHQLEARIDSLAARN 70 (251)
T ss_dssp HHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 209
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.32 E-value=1.1e+02 Score=20.60 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11659 328 QVKQLESKNLSYIQQTLDLE 347 (684)
Q Consensus 328 ~~~~Le~~~~~l~~~~~~LE 347 (684)
++..|.+..+.|.+++..||
T Consensus 7 ~mq~LNdrlAsyidkVR~LE 26 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLE 26 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 210
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.36 E-value=2.9e+02 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 267 QSKQMEDLELKLNSLEETAGEARYLKDEVDILR 299 (684)
Q Consensus 267 le~el~~l~~k~~~L~~~a~~~~~L~deld~lr 299 (684)
++..+..|..++..|. .++..|+.++..|+
T Consensus 41 ~~~r~~~L~~eN~~L~---~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ---KKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3333344444444333 33444444444443
No 211
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=21.11 E-value=1.2e+02 Score=25.90 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=30.7
Q ss_pred cHHHHHHHHHhhCCCcCChhHhhhhccccCCcchhhhhhcHHHHHHHHHHHHHHhhcccccCccccchhHHhhc
Q psy11659 36 DGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVEN 109 (684)
Q Consensus 36 dG~~l~~vl~~idp~~f~~~~l~~i~~~~~~~nw~l~~~Nl~~i~~~i~~y~~~~l~~~~~~~~~pd~~~ia~~ 109 (684)
|.-++..|...+ |..|..++ -+.||..|.++|.+ |. .+|+..+...
T Consensus 20 ~~~~~~~v~~~l-~~dF~~~~-------------------h~~If~~i~~l~~~--~~------~~d~~tl~~~ 65 (143)
T 2r6a_C 20 SRDVALVVQERI-GGRFNIEE-------------------HRALAAYIYAFYEE--GH------EADPGALISR 65 (143)
T ss_dssp CHHHHHHHHHHC-CSCCSSHH-------------------HHHHHHHHHHHHTT--SC------CSCHHHHTTT
T ss_pred CHHHHHHHHHhc-cccCCcHH-------------------HHHHHHHHHHHHHc--CC------CCCHHHHHHH
Confidence 455678888888 88777532 25788888888854 33 2566666554
No 212
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=21.10 E-value=92 Score=24.06 Aligned_cols=53 Identities=19% Similarity=0.398 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcccccCccccchhHHhh---c--CCHHHHHHHHHHHHHHHhcCCCchhhhHHhH
Q psy11659 82 GIVDYFQEYFDQALGEFGKVDVHKIVE---N--IDAKELARLMQLILGCAINCNRKQNYITKIM 140 (684)
Q Consensus 82 ~i~~y~~~~l~~~~~~~~~pd~~~ia~---~--~d~~el~~ll~lvl~~av~~~~~~~~I~~I~ 140 (684)
.|..||+..+|.++++. +...|.. . -++.=+..++.-. ..+.-.+-.||.+|.
T Consensus 5 ~l~~~~e~~~gr~ls~~---e~~~i~~w~~~~~~~~elI~~A~~~a---~~~~~~s~~Yi~~Il 62 (78)
T 2zc2_A 5 ALVEDFERELGRMLSPF---ELEDLQKTVSDDKTDPDLVRSALREA---VFNGKTNWNYIQAIL 62 (78)
T ss_dssp HHHHHHHHHHTSCCCHH---HHHHHHHHHTTTCCCHHHHHHHHHHH---HHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHH---HHHHHHHHHHHhCCCHHHHHHHHHHH---HHcCCCCHHHHHHHH
Confidence 56778888888665433 2233332 1 2333334444443 234555678999886
No 213
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.77 E-value=63 Score=27.04 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhc
Q psy11659 447 PITELRQKLVRLTHENNMLQMNQ 469 (684)
Q Consensus 447 ~~~el~~~l~~Le~Enk~Lr~~~ 469 (684)
++++|-.+|.+|+-||+.|+.+.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998554
No 214
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.66 E-value=2.5e+02 Score=29.57 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 279 NSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351 (684)
Q Consensus 279 ~~L~~~a~~~~~L~deld~lr~~~~~~~k~e~~le~~k~kleel~~l~~~~~~Le~~~~~l~~~~~~LEeel~ 351 (684)
+.+..+..+.+.+..+++.++.....+++.-.. +.+ ++...+..+++.+.++.+.+......+++++.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~----~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK----APP-EEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666665544343322211 111 22333444455555554444444444444443
No 215
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.48 E-value=1.3e+02 Score=33.30 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q psy11659 112 AKELARLMQLILGC 125 (684)
Q Consensus 112 ~~el~~ll~lvl~~ 125 (684)
......|..|.+-+
T Consensus 119 ~e~a~~LAAL~lQa 132 (575)
T 2i1j_A 119 PETSVLLASYAVQA 132 (575)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 216
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=20.44 E-value=8e+02 Score=26.16 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy11659 308 YEGIIETYKKK 318 (684)
Q Consensus 308 ~e~~le~~k~k 318 (684)
++..+.+|.+.
T Consensus 64 Ye~~l~kY~~d 74 (497)
T 3iox_A 64 YEAKLAKYQAD 74 (497)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 217
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.38 E-value=3.1e+02 Score=21.32 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=14.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 380 RADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412 (684)
Q Consensus 380 ~~~~le~e~~~L~~~l~~le~e~e~l~~e~~~L 412 (684)
+++.+-.+..-++.++.++...+.++...+..+
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555554444443333
No 218
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.17 E-value=3.6e+02 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11659 188 ARDQMAQRCMELDMQVSMLQEEKSCLVE 215 (684)
Q Consensus 188 e~d~l~~~~~el~~q~~~L~~e~~~l~~ 215 (684)
-+.+|-+.|-+|++.++.+.++...|+.
T Consensus 31 SKqELIqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777666665555444443
Done!