RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11659
(684 letters)
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 510 bits (1316), Expect = e-173
Identities = 299/705 (42%), Positives = 449/705 (63%), Gaps = 40/705 (5%)
Query: 7 DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
D+ ELC LL WLQTF L AP ++ D+TDGVAMAQ L+QI PEWF+E WL++IK D+G
Sbjct: 4 DKMELCESLLTWLQTFNLSAPCATVEDLTDGVAMAQVLNQIDPEWFNESWLSRIKEDVGD 63
Query: 67 NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
N WRLK+SNLKKI +GI DY+Q+ Q L EF D++ I E D EL RL+QLILGCA
Sbjct: 64 N-WRLKVSNLKKILQGIYDYYQDVLGQQLSEFLLPDLNLIAEKSDPAELGRLLQLILGCA 122
Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMS---LDPQVQNLVAELQ 183
+NC KQ YI +IM LEESVQ V+M +IQEL + + S LD Q++ + +L+
Sbjct: 123 VNCEEKQEYIQQIMTLEESVQHVVMTAIQELMSKEQGSSPSRESAGNLDQQLKKALEDLK 182
Query: 184 TVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ------ENFVEPTNKGNS 237
+ +D++AQRC ELD QV +LQEEK+ L +E +L+ER + +K +
Sbjct: 183 EAQEEKDELAQRCHELDKQVLLLQEEKNSLQQENEKLQERLAQLEGSSLGPNQLGSKKYN 242
Query: 238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
++ Q++ L+EE F+ E+ARDDYRIK E K++ +L+ + + L A E++ LKDE+D+
Sbjct: 243 LLQSQLEQLQEENFRLEAARDDYRIKCEELEKELAELQHRNDELTSLAAESQALKDEIDV 302
Query: 298 LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWK 357
LRE+++K +K E +ETYKKK E+L DL++QVK LE +N Y+Q T+ LEEELKK +
Sbjct: 303 LRESSDKAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTVQLEEELKKANAAR 362
Query: 358 SQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417
Q++ YK+Q+ EL+ + +EE+K+ADK EFE K+L+EK+ +LQ+EKE+L+ ERDSL+ETNE
Sbjct: 363 GQLETYKRQVQELHAKLSEESKKADKLEFEYKRLEEKLEALQKEKERLLAERDSLRETNE 422
Query: 418 ELKCCQLQQSK--SAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEG 475
EL+C Q QQ + A+ T +L+ + +P E R+KL+RL HEN ML++ Q+
Sbjct: 423 ELRCGQAQQDQLTQADAGTSPSGDNLAAELLPS-EYREKLIRLQHENKMLRLGQEGSENE 481
Query: 476 KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV---------TEDAAGMK-- 524
++ + L+D ++ + R ANQRILEL+ ++++ +ED++ +K
Sbjct: 482 RITELQQLLEDANRRNNELETQLRLANQRILELQQQVEDLQKALQEQGSKSEDSSLLKSK 541
Query: 525 -----VKIFELQNEIKNLKEQINHQQEEHLEQGKL-IEKLQDSITQKDSEIQDYEEKNRK 578
++ E E++ +EQI + + + I +L+ ++ +KD +++ EE+ +K
Sbjct: 542 LEEHLEQLHEANEELQKKREQIEELEPDQDQNLSRKIAELEAALQKKDEDMRAMEERYKK 601
Query: 579 YIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK----EQQEKLI 634
Y+EKA K LDP A E++ L+K+ ++DK + LE EK EQ+EKLI
Sbjct: 602 YVEKAREVIKTLDPKQNP--ASPEIQLLKKQLTERDKRIRHLESEYEKAKPMREQEEKLI 659
Query: 635 ATAFYNLALQKQRQTADNRLASITFSQQPQSFLTKQRQA--SRRN 677
+A+YNL + Q++ ++RLA + QSFL +QRQA +RR
Sbjct: 660 VSAWYNLGMALQKEAIESRLAGLGGPG--QSFLAQQRQATNARRG 702
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 63.5 bits (155), Expect = 2e-10
Identities = 78/387 (20%), Positives = 175/387 (45%), Gaps = 41/387 (10%)
Query: 252 KAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEAR-----YLKDEVDILRETAEKVE 306
K S+ + R ++E +++E+LE K+ LE+ E R ++ + +E E
Sbjct: 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
Query: 307 KYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ 366
+ + + + E+ L++++ QL + + +LEE L++ ++ + ++
Sbjct: 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
Query: 367 MSELYNQFNEETK--RADKSEFENKK--LQEKVTSLQREKEKLIVERDSLKETNEELKCC 422
+ Q EE K R E + L E+ +L+ E L + + E+L+
Sbjct: 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE-- 844
Query: 423 QLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNA 482
+Q + + ++ E I EL +L L N++ +E L ++ +
Sbjct: 845 --EQIEELSEDIESLAAEIEELEELIEELESELEALL--------NERASLEEALALLRS 894
Query: 483 KLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQIN 542
+L+++++++ R+ + EL EL+E + A +++++ L+ I NL+E+++
Sbjct: 895 ELEELSEEL-------RELESKRSELRRELEELREKLAQ-LELRLEGLEVRIDNLQERLS 946
Query: 543 HQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNE 602
E+ L + +++I+D EE+ R+ +++ + K L P N+AA+ E
Sbjct: 947 -------EEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV--NLAAIEE 994
Query: 603 LKNLRKKNDDKDKMLDDLEKTLEKKEQ 629
+ L+++ D +DL + E E+
Sbjct: 995 YEELKERYDFLTAQKEDLTEAKETLEE 1021
Score = 58.1 bits (141), Expect = 1e-08
Identities = 60/286 (20%), Positives = 130/286 (45%), Gaps = 21/286 (7%)
Query: 383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLS 442
K+E +L V L+ +E+L ++ LKE EEL+ +AEL L E L+
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELE------ELTAELQELEEKLEEL 272
Query: 443 EDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKAN 502
V EL +++ L E L N+ +E + I+ +L ++ +Q++ + +
Sbjct: 273 RLEVS--ELEEEIEELQKELYALA-NEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
Query: 503 QRILELEAEL------KERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIE 556
++ EL EL E + E+ ++ ++ EL+ E++ L+ ++ +E+ +
Sbjct: 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
Query: 557 KLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKM 616
+L+ I ++EI+ E + + +E + + ELK L+ + ++ ++
Sbjct: 390 QLELQIASLNNEIERLEAR-LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
Query: 617 LDDLEKTLEKKEQQEKLIATAFYNL-----ALQKQRQTADNRLASI 657
L++L++ LE+ E+ + + A +++ RL S+
Sbjct: 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
Score = 53.5 bits (129), Expect = 3e-07
Identities = 84/376 (22%), Positives = 175/376 (46%), Gaps = 31/376 (8%)
Query: 152 QSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKS 211
+ I+ELE L+ + L EL+ + + +Q+ + EL Q+S L+++ +
Sbjct: 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
Query: 212 CLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQM 271
L E +LEER + E T +++ L+E L +AE + ++E Q+
Sbjct: 737 RLEAEVEQLEERIAQLSKELTEL-----EAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
Query: 272 EDLELKLNSLEETAGEARYLKDEVDILRETA-EKVEKYEGIIETYKKKAEELVDLKKQVK 330
E L+ +L +L E E R E+ +L E A E+ E + L DL++Q++
Sbjct: 792 EQLKEELKALREALDELR---AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
Query: 331 QLE------SKNLSYIQQTLD-LEEELKKNGNWKSQVDMY----KKQMSELYNQFNEETK 379
+L + + +++ ++ LE EL+ N ++ ++ + ++ EL + E
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
Query: 380 RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENL 439
+ + E ++L+EK+ L+ E L V D+L+E E L+++++ E +
Sbjct: 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
Query: 440 DLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENR 499
+ + L K+ L N+ + + ++++ + + + A+ +D+T+ +TLE
Sbjct: 969 EARRR---LKRLENKIKELG-PVNLAAIEEYEELKERYDFLTAQKEDLTEAK--ETLE-- 1020
Query: 500 KANQRILELEAELKER 515
+ I E++ E +ER
Sbjct: 1021 ---EAIEEIDREARER 1033
Score = 47.4 bits (113), Expect = 3e-05
Identities = 47/221 (21%), Positives = 108/221 (48%), Gaps = 18/221 (8%)
Query: 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILE 507
I E R+++ L + L+ + ++E L + +L+++ ++++ E + +++I
Sbjct: 672 ILERRREIEELEEKIEELE-EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
Query: 508 LEAELK------ERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDS 561
L +L E++ E A + ++ EL+ EI+ L+E++ +EE E IE+L+
Sbjct: 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
Query: 562 ITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLE 621
I Q E++ R+ +++ + LL+ N+ L++L ++ ++ L+DLE
Sbjct: 791 IEQLKEELK----ALREALDELRAELTLLNEEAANLR--ERLESLERRIAATERRLEDLE 844
Query: 622 KTLEKKEQQEKLIATAFYNL-----ALQKQRQTADNRLASI 657
+ +E+ + + +A L L+ + + N AS+
Sbjct: 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
Score = 45.0 bits (107), Expect = 1e-04
Identities = 57/285 (20%), Positives = 125/285 (43%), Gaps = 33/285 (11%)
Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQ-------- 225
+++ L EL+ + + + + EL ++ L+E+ L E LEE +
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
Query: 226 --------ENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELK 277
E + + +++ RQ++ L+ +L + ES D+ +L +++E+L+ +
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
Query: 278 LNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNL 337
L SLE E L E ++E+ E +ET + K + L+ Q+ L ++
Sbjct: 353 LESLEAELEELE------AELEELESRLEELEEQLETLRSK---VAQLELQIASLNNEIE 403
Query: 338 SYIQQTLDLEEELKKNGNWKSQVD--MYKKQMSELYNQFNEETKRADKSEFENKKLQEKV 395
+ LE+ ++ ++ + + ++ EL + E + ++ + E ++L+E +
Sbjct: 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
Query: 396 TSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLD 440
L+ E E+ D+ + +L Q++ L L ENL+
Sbjct: 464 EELREELEEAEQALDAAERELAQL------QARLDSLERLQENLE 502
Score = 42.0 bits (99), Expect = 0.001
Identities = 33/185 (17%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Query: 169 MSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQE-- 226
L ++ NL +L+ + +++ + EL +++ L+E+ L EE LE +E
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
Query: 227 NFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAG 286
+E + Q++ L+ ++ + E ++E ++E LE + L++
Sbjct: 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
Query: 287 EARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDL 346
E +E + L+E ++E+ E +E +++ E L + +++++ + +
Sbjct: 425 ELLKKLEEAE-LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
Query: 347 EEELK 351
+L+
Sbjct: 484 LAQLQ 488
Score = 42.0 bits (99), Expect = 0.001
Identities = 65/318 (20%), Positives = 133/318 (41%), Gaps = 50/318 (15%)
Query: 321 ELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKR 380
E+ +L++++++LE K + +L +EL+ + +++ +K++ EL Q + K
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELE---ELEEELEQLRKELEELSRQISALRKD 734
Query: 381 ADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLD 440
+ E E ++L+E++ L +E +L E + L+E EE +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE------------------AEEE 776
Query: 441 LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRK 500
L+E I EL ++ +L + + L+ + A+L TL N +
Sbjct: 777 LAEAEAEIEELEAQIEQL--------KEELKALREALDELRAEL----------TLLNEE 818
Query: 501 ANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQD 560
A LE + A + ++ +L+ +I+ L E I E E +LIE+L+
Sbjct: 819 AANLRERLE-----SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
Query: 561 SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDL 620
+ +E EE + S + L ++ + ++ LR++ ++ + L L
Sbjct: 874 ELEALLNERASLEE----ALALLRSELEELSEELRELE--SKRSELRRELEELREKLAQL 927
Query: 621 EKTLEKKEQQEKLIATAF 638
E LE E + +
Sbjct: 928 ELRLEGLEVRIDNLQERL 945
Score = 40.8 bits (96), Expect = 0.003
Identities = 36/203 (17%), Positives = 89/203 (43%), Gaps = 4/203 (1%)
Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDAR 189
++ ++ ELEE + + + ++ LE + L+ +++ L +L+T+
Sbjct: 330 SKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
Query: 190 DQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEE 249
Q+ + L+ ++ L+ L + + RL++ +E + ++ +++ L+EE
Sbjct: 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
Query: 250 LFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYE 309
L + + + LE +++E+ E L++ E E L+ +D L E +E +
Sbjct: 449 LEELQEELERLEEALEELREELEEAEQALDAAER---ELAQLQARLDSLERLQENLEGFS 505
Query: 310 GIIETYKKKAEELVDLKKQVKQL 332
++ K L + + +L
Sbjct: 506 EGVKALLKNQSGLSGILGVLSEL 528
Score = 40.8 bits (96), Expect = 0.003
Identities = 59/264 (22%), Positives = 121/264 (45%), Gaps = 23/264 (8%)
Query: 238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARY------- 290
+R +++ L+EEL +AE ++ +L+ +++E+L L+++ LEE E +
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
Query: 291 ----LKDEVDILRETAEKVEK----YEGIIETYKKKAEELV-DLKKQVKQLESKNLSYIQ 341
L+ + ILRE +E+ E +E + K +EL +L + ++LE
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
Query: 342 QTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQRE 401
+LEE + +S+++ ++Q+ L ++ + + E ++L+ ++ L+
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
Query: 402 KEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHE 461
+E+L E + L + EE + + Q++ EL E L + L + L L E
Sbjct: 416 RERLQQEIEELLKKLEEAE-LKELQAELEELEEELEELQEELE-----RLEEALEELREE 469
Query: 462 NNMLQMNQKDDIEGKLNIVNAKLD 485
+ D E +L + A+LD
Sbjct: 470 LEEAE-QALDAAERELAQLQARLD 492
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 60.5 bits (147), Expect = 2e-09
Identities = 87/397 (21%), Positives = 174/397 (43%), Gaps = 60/397 (15%)
Query: 235 GNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDE 294
G S +R A K EL + E + +LE ++++ L+ +L SLE+ E R
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR----- 708
Query: 295 VDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNG 354
+QLE + +L ++
Sbjct: 709 -----------------------------------RQLEELERQLEELKRELAALEEELE 733
Query: 355 NWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
+S+++ ++++ EL + E +R ++ E E + L+E + L+ E E+L +R +L+E
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793
Query: 415 TNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
EEL EL L + L Q+ RL E L+ + +++E
Sbjct: 794 ELEEL---------EEELEEA--ERRLDALERELESLEQRRERLEQEIEELE-EEIEELE 841
Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEI 534
KL+ + +L+++ ++++ E + ELE ELKE + E+ ++ ++ EL++E+
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE-LEEEKEELEEELRELESEL 900
Query: 535 KNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKN-----RKYIEKANSAFKL 589
LKE+I +E E +E+L+ + + + E+++ E + IE+ +
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA 960
Query: 590 LDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEK 626
L P N+ A+ E + + ++ ++ +DLE+ EK
Sbjct: 961 LGPV--NLRAIEEYEEVEERYEELKSQREDLEEAKEK 995
Score = 59.7 bits (145), Expect = 5e-09
Identities = 79/350 (22%), Positives = 170/350 (48%), Gaps = 14/350 (4%)
Query: 240 RRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILR 299
++ +LK EL E ++ R +LE +Q+E+L+ +L +LEE + ++
Sbjct: 687 EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEE--LEQLQSRLEELEE 744
Query: 300 ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQ 359
E E E+ E + E ++ EEL L++ + +L+ + ++ L+EEL+ + +
Sbjct: 745 ELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE---ELEEE 801
Query: 360 VDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
++ ++++ L + +R ++ E E ++L+E++ L+ + ++L E + L++ EEL
Sbjct: 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861
Query: 420 KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
K +L++ + AE L + L E+ EL ++L L E L+ + + + +L
Sbjct: 862 K-EELEELE-AEKEELEDELKELEEE--KEELEEELRELESELAELK-EEIEKLRERLEE 916
Query: 480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELK-ERVTEDAAGMKVKIFELQNEIKNLK 538
+ AKL+ + ++ E + + LE E E + ER+ E+ + E + ++
Sbjct: 917 LEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVE 976
Query: 539 EQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588
E+ + + + + EKL + I + D E E+ ++ +K N F
Sbjct: 977 ERYEELKSQREDLEEAKEKLLEVIEELDKEK---RERFKETFDKINENFS 1023
Score = 57.8 bits (140), Expect = 1e-08
Identities = 81/393 (20%), Positives = 183/393 (46%), Gaps = 35/393 (8%)
Query: 266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDL 325
I +K E +L +EE AG ++Y + + + R+ E E + + ++ ++L L
Sbjct: 150 INAKPEERRKL----IEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKL 205
Query: 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSE 385
++Q ++ E + +L+ EL++ ++ + ++ EL + E + + E
Sbjct: 206 ERQAEKAE--------RYQELKAELRE-----LELALLLAKLKELRKELEELEEELSRLE 252
Query: 386 FENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQ-----QSKSAELNTLGENLD 440
E ++LQE++ ++E E+L E + L+E EEL+ L+ + E++ L E L+
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312
Query: 441 LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRK 500
E+ + EL ++L L + L+ + ++ E L + L ++ + + E +
Sbjct: 313 ELENE--LEELEERLEELKEKIEALK-EELEERETLLEELEQLLAELEEAKE----ELEE 365
Query: 501 ANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQD 560
+LE EL E + E+ A ++ ++ E++NE++ LK +I +E + +E L++
Sbjct: 366 KLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425
Query: 561 SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDL 620
+ + ++E+++ + + +E+ N + L+ ++ + LK L ++ + + L L
Sbjct: 426 ELKELEAELEELQTE----LEELNEELEELEEQLEE--LRDRLKELERELAELQEELQRL 479
Query: 621 EKTLEKKEQQEKLIATAFYNLALQKQRQTADNR 653
EK L E + + + A
Sbjct: 480 EKELSSLEARLDRLEAEQRASQGVRAVLEALES 512
Score = 57.4 bits (139), Expect = 2e-08
Identities = 76/343 (22%), Positives = 156/343 (45%), Gaps = 36/343 (10%)
Query: 246 LKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLE---ETAGEARYLKDEVDILRETA 302
KE +AE + LE +E+LE +L LE E A + LK E+ L
Sbjct: 170 YKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELAL 229
Query: 303 ------EKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNW 356
E ++ E + E + EEL +L++++++ E + I++ EEL++
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE----IEELKSELEELREELEE 285
Query: 357 KSQVDM-YKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL---IVERDSL 412
+ + K+++ EL + + +R ++ E E ++L+E++ L+ + E L + ER++L
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345
Query: 413 KETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDD 472
E E+L + EL L + + LR++L L + +
Sbjct: 346 LEELEQLLA--ELEEAKEELEEKLSALLEELEEL-FEALREELAEL--------EAELAE 394
Query: 473 IEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQN 532
I +L + +++ + ++++ + + + ELEAEL+E TE EL
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELE--------ELNE 446
Query: 533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
E++ L+EQ+ ++ E + + +LQ+ + + + E+ E +
Sbjct: 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEAR 489
Score = 54.3 bits (131), Expect = 2e-07
Identities = 68/340 (20%), Positives = 148/340 (43%), Gaps = 23/340 (6%)
Query: 176 QNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKG 235
+ L+ + D +++ ++ +L+ Q + + L E R LE ++ K
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE-LKAELRELELALLLAKLKELRKE 240
Query: 236 NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEV 295
+ ++ L+EEL + + ++ ++E ++E+L +L L+E E + +E+
Sbjct: 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEEL 300
Query: 296 DILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGN 355
+ E + E+ E + ++ E L +LK++++ L+ + +LE+ L +
Sbjct: 301 E--GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358
Query: 356 WKSQVD-MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
K +++ + EL F + + E E +++ ++ L+RE E L + L E
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418
Query: 415 TNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
E+LK + + AEL L L+ EL ++L L + L+ K ++E
Sbjct: 419 RLEDLK--EELKELEAELEELQTELE---------ELNEELEELEEQLEELRDRLK-ELE 466
Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE 514
+L + +L + +++ R+ LEAE +
Sbjct: 467 RELAELQEELQRLEKELS-------SLEARLDRLEAEQRA 499
Score = 54.3 bits (131), Expect = 2e-07
Identities = 61/303 (20%), Positives = 139/303 (45%), Gaps = 23/303 (7%)
Query: 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKC-C 422
K+++ EL + E + +K E E K L+ ++ SL+ E+L + + L+ EELK
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725
Query: 423 QLQQSKSAELNTLGENLD--LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIV 480
+ + +L + E L+ L E + EL+++L L E L+ ++ ++ +
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE-EALAKLKEEIEEL 784
Query: 481 NAKLDDVTQQVKMKTLENRKANQRILELEAELK------ERVTEDAAGMKVKIFELQNEI 534
K + ++++ E +A +R+ LE EL+ ER+ ++ ++ +I EL+ ++
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL 844
Query: 535 KNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTV 594
L+E++ ++E E + +E+L+ + + E+++ EE+ + E+
Sbjct: 845 DELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE--------- 895
Query: 595 QNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRL 654
+EL L+++ + + L++LE LE+ E + + + +
Sbjct: 896 ----LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951
Query: 655 ASI 657
+
Sbjct: 952 ERL 954
Score = 47.8 bits (114), Expect = 2e-05
Identities = 66/276 (23%), Positives = 130/276 (47%), Gaps = 24/276 (8%)
Query: 144 ESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQV 203
E + + ++ LE+L L+ Q++ L EL + + +Q+ R EL+ ++
Sbjct: 687 EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746
Query: 204 SMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIK 263
L+EE L E LEE S+ + LKEE+ + E R + +
Sbjct: 747 EELEEELEELQERLEELEEE------------LESLEEALAKLKEEIEELEEKRQALQEE 794
Query: 264 LEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELV 323
LE +++E+ E +L++LE + + +E E E+ E + E + EEL
Sbjct: 795 LEELEEELEEAERRLDALERELESLE--QRRERLEQEIEELEEEIEELEEKLDELEEELE 852
Query: 324 DLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADK 383
+L+K++++L+ + + +LE+ELK+ + + + ++++ EL +
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKEL---EEEKEELEEELREL-------ESELAE 902
Query: 384 SEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
+ E +KL+E++ L+ + E+L VE L+E EE
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938
Score = 41.6 bits (98), Expect = 0.001
Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTN 233
+++ + EL+ I+A + + L ++ L E EE E
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE------- 372
Query: 234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKD 293
+ +AL+EEL + E+ + R +LE +++E LE +L L E ++
Sbjct: 373 ----ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER--LEDLKEE 426
Query: 294 EVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353
++ E E + E + E ++ E+L +L+ ++K+LE + ++ LE+EL
Sbjct: 427 LKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486
Query: 354 GNWK 357
Sbjct: 487 EARL 490
Score = 32.0 bits (73), Expect = 1.2
Identities = 32/174 (18%), Positives = 77/174 (44%), Gaps = 5/174 (2%)
Query: 132 KQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQ 191
+ + ++ E +E +++ + ++ELE L + L+ ++ + EL+ + +
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408
Query: 192 MAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELF 251
+ +R L ++ L+EE L E L+ +E E Q++ L++ L
Sbjct: 409 LEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEE-----QLEELRDRLK 463
Query: 252 KAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKV 305
+ E + + +L+ K++ LE +L+ LE ++ ++ ++ L V
Sbjct: 464 ELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGV 517
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 57.8 bits (140), Expect = 2e-08
Identities = 105/507 (20%), Positives = 238/507 (46%), Gaps = 39/507 (7%)
Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDAR 189
R+ + K ++ E+++++I + +ELE + + + S P+++ + +L+ +
Sbjct: 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEI-SSELPELREELEKLEKEVKEL 233
Query: 190 DQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALK-- 247
+++ + EL+ ++ L+ K L E+ R LEER +E ++ + +++ LK
Sbjct: 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE--LKKEIEELEEKVKELKELKEK 291
Query: 248 -EELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVE 306
EE K ++Y +L K++ LE ++N +EE E ++ ++ L++ +++E
Sbjct: 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351
Query: 307 KYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ 366
K +E + EE K+++++L+ + + LE+EL++ K +++ +
Sbjct: 352 KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE--KLEKELEELEKAKEEIEEEISK 409
Query: 367 MSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQ 426
++ + +E K K+ E KK + K RE + ++ L+E ELK
Sbjct: 410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE-HRKELLEEYTAELK------ 462
Query: 427 SKSAELNTLGENL-DLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLD 485
EL + E L ++ + ++ +K L + + Q ++E KL N +
Sbjct: 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE--QLKELEEKLKKYNLE-- 518
Query: 486 DVTQQVKMKTLENRKANQRILELEAELK--ERVTEDAAGMKVKIFELQNEIKNLKEQINH 543
+++ K E K +++++L+ E+K ++ E +K K+ EL+ ++ L+E++
Sbjct: 519 ----ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAE 574
Query: 544 QQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNEL 603
+E E G +S+ + + +++ E +Y+E ++ +L EL
Sbjct: 575 LLKELEELGF------ESVEELEERLKELEPFYNEYLELKDAEKELER-------EEKEL 621
Query: 604 KNLRKKNDDKDKMLDDLEKTLEKKEQQ 630
K L ++ D + L + EK LE+ ++
Sbjct: 622 KKLEEELDKAFEELAETEKRLEELRKE 648
Score = 54.3 bits (131), Expect = 2e-07
Identities = 92/460 (20%), Positives = 208/460 (45%), Gaps = 60/460 (13%)
Query: 206 LQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLE 265
L+EE L +E + LEE +E +E K S+ L+E++ ++ +L+
Sbjct: 219 LREELEKLEKEVKELEELKEE--IEELEKELESLEGSKRKLEEKI----RELEERIEELK 272
Query: 266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDL 325
+ +++E+ +L L+E A E L + + + ++EK +E EE+ +
Sbjct: 273 KEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE------EEINGI 326
Query: 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS- 384
++++K+LE K + L+E K+ + + ++Y++ ++ + + +
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTP 386
Query: 385 ---EFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELN--TLGENL 439
E E ++L++ ++ E K+ LK+ +ELK +++ K A+ G L
Sbjct: 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK-AIEELKKAKGKCPVCGREL 445
Query: 440 DLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENR 499
+ E +L R+ E + + ++ E KL +L+ V ++ + ++ +
Sbjct: 446 TEEHRKELLEEYTAELKRIEKE-----LKEIEEKERKLRKELRELEKVLKKES-ELIKLK 499
Query: 500 KANQRILELEAELK-------ERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQG 552
+ +++ ELE +LK E+ E+ +K K+ +L+ EIK+LK+++ +E +
Sbjct: 500 ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
Query: 553 KLIEKLQD------------------SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTV 594
+L +KL + S+ + + +++ E +Y+E ++ +L
Sbjct: 560 ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELER--- 616
Query: 595 QNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLI 634
E K L+K ++ DK ++L +T ++ E+ K +
Sbjct: 617 -------EEKELKKLEEELDKAFEELAETEKRLEELRKEL 649
Score = 42.4 bits (100), Expect = 8e-04
Identities = 65/301 (21%), Positives = 144/301 (47%), Gaps = 23/301 (7%)
Query: 299 RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKS 358
E+ EKV + ++ Y+ + L ++ K++K+ + +I++T ++EE +K+
Sbjct: 144 DESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELE 203
Query: 359 QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEE 418
+V ++S + EE ++ +K E ++L+E++ L++E E L + L+E E
Sbjct: 204 EVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
Query: 419 LKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLN 478
L+ + + E+ L E + ++ E KL E ++ +IE +L+
Sbjct: 264 LE--ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL----DELREIEKRLS 317
Query: 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE------------RVTEDAAGMKVK 526
+ +++ + + ++K LE ++ R+ EL+ +LKE + E+A K +
Sbjct: 318 RLEEEINGI--EERIKELEEKEE--RLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
Query: 527 IFELQNEIKNL-KEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANS 585
+ L+ + L E++ + EE + + IE+ IT + E++ ++ +K IE+
Sbjct: 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
Query: 586 A 586
A
Sbjct: 434 A 434
Score = 38.9 bits (91), Expect = 0.010
Identities = 57/240 (23%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 202 QVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYR 261
++ +++E + E++R+L + +E +E K S + + + E+L + E Y
Sbjct: 460 ELKRIEKELKEIEEKERKLRKELRE--LEKVLKKESELIKLKELA-EQLKELEEKLKKYN 516
Query: 262 I-KLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAE 320
+ +LE ++++ E L+ KL L+ GE + LK E++ L E +K+ + E ++ +++
Sbjct: 517 LEELEKKAEEYEKLKEKLIKLK---GEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
Query: 321 ELV------------DLKKQVKQLESKNLSYIQ---QTLDLEEELKKNGNWKSQVDMYKK 365
EL+ +L++++K+LE Y++ +LE E K+ + ++D +
Sbjct: 574 ELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633
Query: 366 QMSELYNQFNEETKRADK-----SEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
+++E + E K ++ SE E ++L+E+ L RE L E + L++ EE+K
Sbjct: 634 ELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693
Score = 38.5 bits (90), Expect = 0.011
Identities = 71/360 (19%), Positives = 160/360 (44%), Gaps = 32/360 (8%)
Query: 181 ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMR 240
E+ + ++ + EL + L++ K R L E ++ +E +
Sbjct: 406 EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIE 465
Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSK--QMEDLELKLNSLEETAGE--ARYLKDEVD 296
+++ ++E+ K + L+ +S+ ++++L +L LEE + L+ + +
Sbjct: 466 KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAE 525
Query: 297 ILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNG-N 355
+ EK+ K +G I++ KK+ E+L +LKK++ +LE K ++ +L +EL++ G
Sbjct: 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE 585
Query: 356 WKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKET 415
+++ K++ YN++ E +E K+L+ + L++ +E+L + L ET
Sbjct: 586 SVEELEERLKELEPFYNEYLE----LKDAE---KELEREEKELKKLEEELDKAFEELAET 638
Query: 416 NEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEG 475
+ L+ EL L + E ELR++ + L+ E L+ + +++E
Sbjct: 639 EKRLE------ELRKELEELEKKYSEEE----YEELREEYLELSRELAGLR-AELEELEK 687
Query: 476 KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIK 535
+ + L+ L+ + + E E E+ E ++ K+ + + +K
Sbjct: 688 RREEIKKTLEK---------LKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 57.0 bits (138), Expect = 3e-08
Identities = 78/351 (22%), Positives = 144/351 (41%), Gaps = 47/351 (13%)
Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKS------CLVEEKRRLEERFQEN 227
+V+ + L +ID E Q+ L+ E+ L++EKR E
Sbjct: 181 EVEENIERLDLIID----------EKRQQLERLRREREKAERYQALLKEKREYEGYELLK 230
Query: 228 FVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGE 287
E + ++ RQ+ +L+EEL K + +LE + +E+L K+ L E E
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE--EE 288
Query: 288 ARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLE 347
+K++ + E ++ E I + EL D ++++ +LE++ + + +LE
Sbjct: 289 QLRVKEK---IGELEAEIASLERSIAEKE---RELEDAEERLAKLEAEIDKLLAEIEELE 342
Query: 348 EEL----KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKE 403
E+ K+ + K+++ +L + E K ++ E K +EK+ L+RE
Sbjct: 343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
Query: 404 KLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENN 463
+L E D L+E + L E DL+ I + K+ L E
Sbjct: 403 ELKRELDRLQEELQRLS---------------EELADLNAA---IAGIEAKINELEEEKE 444
Query: 464 MLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE 514
+ K E KL + A L Q++ E + + + +L+ EL E
Sbjct: 445 DKALEIKKQ-EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
Score = 53.9 bits (130), Expect = 2e-07
Identities = 71/355 (20%), Positives = 157/355 (44%), Gaps = 35/355 (9%)
Query: 238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
++R++ +L+ EL + E+ D+ +L S+++ ++E ++ LE+ + +
Sbjct: 685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ------EEEKLKER 738
Query: 298 LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWK 357
L E E + E IE K EL +L+ ++++LE + DLE L
Sbjct: 739 LEELEEDLSSLEQEIENVK---SELKELEARIEELEEDLHKLEEALNDLEARLS-----H 790
Query: 358 SQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417
S++ + ++S+L + + R + E + +L + L++E ++L +R LKE +
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
Query: 418 ELKCCQLQQSKSAELNTLGENLD--LSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEG 475
+ + + LN E L+ L E + +L +L L E + L+ Q ++E
Sbjct: 851 SI------EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE-AQLRELER 903
Query: 476 KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGM-----KVKIFEL 530
K+ + A+++ +++ + + + E+E E + + ++ +
Sbjct: 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRV 963
Query: 531 QNEIKNLKE----QINHQQEEHLEQGKLIEKLQDSITQKDS---EIQDYEEKNRK 578
+ EI+ L+ I +E +L EK ++ + I++YE+K R+
Sbjct: 964 EEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Score = 53.9 bits (130), Expect = 3e-07
Identities = 55/353 (15%), Positives = 142/353 (40%), Gaps = 54/353 (15%)
Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLE----------------------LKL 278
R+ + EEL + E + + ++ + +Q+E L L
Sbjct: 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL 229
Query: 279 NSLEETAGEARYLKDEVDILRETAEKVE-KYEGIIETYKKKAEELVDLKKQVKQLESKNL 337
E + ++ ++ L E EK+ + + + ++ + L +L K++K L +
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289
Query: 338 SYIQQTL-DLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVT 396
+++ + +LE E+ + + + ++++ + + + DK E ++L+ ++
Sbjct: 290 LRVKEKIGELEAEIA---SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
Query: 397 SLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLV 456
++ ++KL E LKE E+L+ + E + L + R+KL
Sbjct: 347 EERKRRDKLTEEYAELKEELEDLR--AELEEVDKEFAETRDELK---------DYREKLE 395
Query: 457 RLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516
+L E N L+ +L + Q++ + + A I EL+E
Sbjct: 396 KLKREINELKRELD------------RLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
Query: 517 TEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEI 569
+ A +I + + +++ L ++ ++E + + ++++ +++ E+
Sbjct: 444 EDKAL----EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
Score = 47.8 bits (114), Expect = 2e-05
Identities = 47/251 (18%), Positives = 117/251 (46%), Gaps = 26/251 (10%)
Query: 170 SLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFV 229
L ++ +L +EL+ + + D+++Q + ++ +++E L +E+ +L+ER +E
Sbjct: 685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE--- 741
Query: 230 EPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEAR 289
+ + +L++E+ +S + ++E + + LE LN L EAR
Sbjct: 742 ---------LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL-----EAR 787
Query: 290 YLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEE 349
+ ++ K+E+ IE ++ E+ ++ K+ K +++E
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK---------EIQEL 838
Query: 350 LKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVER 409
++ + K Q+ +K++ L + E + ++ E + L+ ++ L++E+++L +
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
Query: 410 DSLKETNEELK 420
L+ EEL+
Sbjct: 899 RELERKIEELE 909
Score = 42.0 bits (99), Expect = 0.001
Identities = 57/314 (18%), Positives = 120/314 (38%), Gaps = 26/314 (8%)
Query: 150 IMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEE 209
+ ++ +EN ++ + E++ + +++ +R EL+ +S L++E
Sbjct: 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
Query: 210 KSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIK-----L 264
+ E + LE R +E + + L+E L E+ RI L
Sbjct: 753 IENVKSELKELEARIEE------------LEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
Query: 265 EIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVD 324
+++ +E +L +E+ K+ ++ +E E E+ + E K +E+ +
Sbjct: 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLE--KEIQELQEQRIDLKEQIKSIEKEIEN 858
Query: 325 LKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS 384
L + ++LE + DLE L + K + D + Q+ EL + E + +K
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLG---DLKKERDELEAQLRELERKIEELEAQIEKK 915
Query: 385 EFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL----KCCQLQQSKSAELNTLGENLD 440
+L+ K+ +L+ E ++ + +E EE Q E+ L
Sbjct: 916 RKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNM 975
Query: 441 LSEDSVPITELRQK 454
L+ R
Sbjct: 976 LAIQEYEEVLKRLD 989
Score = 38.9 bits (91), Expect = 0.011
Identities = 41/229 (17%), Positives = 96/229 (41%), Gaps = 17/229 (7%)
Query: 136 ITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQR 195
I + E I ++E+E L+ ++Q L + + + + +
Sbjct: 796 IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855
Query: 196 CMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAES 255
L+ + L+EE E+ R E+ + K + Q+ L+ ++ + E+
Sbjct: 856 IENLNGKKEELEEE-----LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
Query: 256 ARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYE------ 309
+ R +L ++E LE +L+ +E+ GE + +E L + ++++ E
Sbjct: 911 QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
Query: 310 -----GIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353
I+ Y++ + L +LK++ +LE + + I + ++ E+ K+
Sbjct: 971 EPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKA-ILERIEEYEKKKRE 1018
Score = 37.4 bits (87), Expect = 0.034
Identities = 65/295 (22%), Positives = 117/295 (39%), Gaps = 46/295 (15%)
Query: 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQ 423
K+++S L ++ R D+ E K+ +++E E+L E + LKE EEL+
Sbjct: 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE-D 745
Query: 424 LQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAK 483
L + N E +L I EL + L +L N L+ ++ + A+
Sbjct: 746 LSSLEQEIENVKSELKELEAR---IEELEEDLHKLEEALNDLE---ARLSHSRIPEIQAE 799
Query: 484 LDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINH 543
L + ++V + R+ E+E +L E L+ EI+ L+EQ
Sbjct: 800 LSKLEEEV-------SRIEARLREIEQKLNRLTLEKEY--------LEKEIQELQEQRID 844
Query: 544 QQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNEL 603
+E+ K IE L + + E+++ E R L
Sbjct: 845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES--------------------RL 884
Query: 604 KNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQK-QRQTADNRLASI 657
+L+K+ D+ + L +LE+ K E+ E I L+ K + + + L+ I
Sbjct: 885 GDLKKERDELEAQLRELER---KIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
Score = 36.2 bits (84), Expect = 0.061
Identities = 39/174 (22%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 469 QKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIF 528
QK+ IE +L + +L+ +T+++ + Q + EL ++K+ E+ +K KI
Sbjct: 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG 297
Query: 529 ELQNEIKNLKEQI---NHQQEEHLEQGK----LIEKLQDSITQKDSEIQDYEEKNRKYIE 581
EL+ EI +L+ I + E+ E+ I+KL I + + EI++ ++ K E
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357
Query: 582 KANSAFKLLDPTVQNVAALN--------ELKNLRKKNDDKDKMLDDLEKTLEKK 627
+ + L+ + ++ ELK+ R+K + + +++L++ L++
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
Score = 35.8 bits (83), Expect = 0.098
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 20/192 (10%)
Query: 474 EGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNE 533
+L + +L+ + +++ E R+ R+ EL EL + KI E++ E
Sbjct: 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD--------ASRKIGEIEKE 724
Query: 534 IKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSE-------IQDYEEKNRKYIEKANSA 586
I+ L+++ +E E + + L+ I SE I++ EE K E N
Sbjct: 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL 784
Query: 587 FKLLDPT-VQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQK 645
L + + + EL L ++ + L ++E+ L + +++ + LQ+
Sbjct: 785 EARLSHSRIPEIQ--AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE--LQE 840
Query: 646 QRQTADNRLASI 657
QR ++ SI
Sbjct: 841 QRIDLKEQIKSI 852
Score = 29.7 bits (67), Expect = 7.9
Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 21/174 (12%)
Query: 178 LVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNS 237
L AEL+ V + + ++ L+ E + L E RL+E Q E +
Sbjct: 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD---- 424
Query: 238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
+ + ++ ++ + E ++D ++++ Q ++E L L+ E+ E+
Sbjct: 425 -LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ----------ELYD 473
Query: 298 LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351
L+E ++VEK K EL + + Q + E + L+ ++
Sbjct: 474 LKEEYDRVEK------ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 56.3 bits (136), Expect = 4e-08
Identities = 93/527 (17%), Positives = 213/527 (40%), Gaps = 66/527 (12%)
Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDAR 189
+ + +I LE ++ + ++ELE L L+ + + + + R
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311
Query: 190 DQMAQRCMELDMQVSM------LQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQM 243
+ + L+ S+ L+E+ L E L E E + ++
Sbjct: 312 ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKEL-EERL 370
Query: 244 DALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEAR----YLKDEVDILR 299
+ L++EL KA ++ +++ +L L ++E E L+ E++ L
Sbjct: 371 EELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELE 430
Query: 300 ETAEKVEKYEGIIETYKKKAEELVD-------LKKQVKQLESKNLSYIQ--QTLDLEEEL 350
E +K+E+ +E+ + EL +++ + K L + + +LEEEL
Sbjct: 431 EEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEEL 490
Query: 351 KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD 410
+ + ++ EL E + + E ++L+EK+ L+ E+L ++
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550
Query: 411 SLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK 470
L+ L L E L ED + EL++ L L +
Sbjct: 551 KLQ------------------LQQLKEELRQLEDR--LQELKELLEELRLLRTRKE---- 586
Query: 471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFEL 530
+L + +L ++ +++K + +R+ +LE L+ +A
Sbjct: 587 -----ELEELRERLKELKKKLK-------ELEERLSQLEELLQSLELSEAE--------- 625
Query: 531 QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLL 590
NE++ +E++ + E+ Q +L E LQ ++ + + ++++ E + R+ +++ + +L
Sbjct: 626 -NELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLE 684
Query: 591 DPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATA 637
+ + EL+ LR++ ++ K L ++E+ +E+ E ++ +
Sbjct: 685 EKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731
Score = 50.1 bits (120), Expect = 3e-06
Identities = 94/524 (17%), Positives = 222/524 (42%), Gaps = 38/524 (7%)
Query: 137 TKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRC 196
KI ELE + +++ LE L L + Q + EL+ + + +R
Sbjct: 185 AKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELE---QEIEALEERL 241
Query: 197 MELDMQVSMLQEEKSCL-------VEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEE 249
EL+ + L+E K+ L +E + EE +E +++ L+ E
Sbjct: 242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKI--ERLEELERE 299
Query: 250 LFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYE 309
+ + E + R LE + +E L+ LE+ + L+ E++ L E
Sbjct: 300 IEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN------ 353
Query: 310 GIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSE 369
E K E L +L++++++LE + +++ LEE +++ K ++ + E
Sbjct: 354 ---ELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQE---LKEELAELSAALEE 407
Query: 370 LYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKS 429
+ + E K ++ E E ++L+E++ L+ + +L + + E + C +
Sbjct: 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVC---G 464
Query: 430 AELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQ 489
EL E L + + EL ++L R E + + + +++E +L + +L ++ +
Sbjct: 465 QELPEEHEKELLELYELELEELEEELSREKEEAELRE--EIEELEKELRELEEELIELLE 522
Query: 490 ----QVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQ 545
+ + K + ELE ++ + ++ + E+K L E++ +
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLR 582
Query: 546 EEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKN 605
+ + +E+L++ + + ++++ EE+ + E S +L + + A EL++
Sbjct: 583 T----RKEELEELRERLKELKKKLKELEERLSQLEELLQS-LELSEAENELEEAEEELES 637
Query: 606 LRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQT 649
+K + + ++ + L+ LE+ E++ + + + + +
Sbjct: 638 ELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEE 681
Score = 49.8 bits (119), Expect = 4e-06
Identities = 85/483 (17%), Positives = 204/483 (42%), Gaps = 40/483 (8%)
Query: 113 KELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLD 172
+EL ++ + + + + L E +++++ ++L++L L L+
Sbjct: 284 EELEEKIERLEELEREIEELEEELEGLRALLEELEELL----EKLKSLEERLEKLEEKLE 339
Query: 173 PQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPT 232
L + + + +R EL+ ++ L++E +E ++LEE QE
Sbjct: 340 KLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQEL----- 394
Query: 233 NKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK 292
+ + + ++ ++EEL + E ++ +LE ++++ LE ++N LE L
Sbjct: 395 KEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELA 454
Query: 293 DEVDIL------------RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYI 340
+ +E E E +E + +E +L++++++LE +
Sbjct: 455 GAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELE 514
Query: 341 QQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQR 400
++ ++L E + + + + E + E+ + E E ++L++++ L+
Sbjct: 515 EELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKE-ELRQLEDRLQELKE 573
Query: 401 EKEKLIVERDSLKETNEELKCCQLQQSKSAEL----NTLGENLDLSEDSVPITELRQKLV 456
E+L + R +E E + + + K EL + L E L E S EL +
Sbjct: 574 LLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEE 633
Query: 457 RLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV 516
L E L + + + ++ A L+++ ++V+ E R+ QRI E ++
Sbjct: 634 ELESELEKLNLQAELE-----ELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLE 688
Query: 517 TEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKN 576
++ +L+ E++ L+E++ ++ E +LIE+L+ + + ++ E+
Sbjct: 689 ---------ELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739
Query: 577 RKY 579
+
Sbjct: 740 KAL 742
Score = 48.2 bits (115), Expect = 1e-05
Identities = 90/501 (17%), Positives = 210/501 (41%), Gaps = 33/501 (6%)
Query: 189 RDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKE 248
+++ + EL + L E ++E ++LEE +E E + ++ ++ L+E
Sbjct: 187 IEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEE 246
Query: 249 ELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKY 308
E + E + LEI+S ++E L+++ L E L+++++ L E ++E+
Sbjct: 247 EKERLEELKARL---LEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEEL 303
Query: 309 EGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMS 368
E +E + EEL +L +++K LE + ++ LE EL + + +
Sbjct: 304 EEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL------EELAEEKNELAK 357
Query: 369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSK 428
L + E +R ++ E E +K E++ L+ ++L E L EE++ ++ +
Sbjct: 358 LLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ----EELE 413
Query: 429 SAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDD---------IEGKLNI 479
E +L E I +L +++ +L + M+ + +
Sbjct: 414 ELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEK 473
Query: 480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKE 539
+L ++ + + L K + E EL++ + E + + + + L+E
Sbjct: 474 ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEE 533
Query: 540 QINHQQEEHLEQGKLIEKLQ-DSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVA 598
++ + E +L EKLQ + ++ +++D ++ ++ +E+ +
Sbjct: 534 KLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE------- 586
Query: 599 ALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASIT 658
EL+ LR++ + K L +LE+ L + E+ + + + L++ + ++ L +
Sbjct: 587 ---ELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN 643
Query: 659 FSQQPQSFLTKQRQASRRNVR 679
+ + L + V
Sbjct: 644 LQAELEELLQAALEELEEKVE 664
Score = 45.1 bits (107), Expect = 1e-04
Identities = 72/425 (16%), Positives = 185/425 (43%), Gaps = 36/425 (8%)
Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
+ + LKE + +A++ ++ +L + +EDL L + + +++E + E
Sbjct: 171 KLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEE-EE 229
Query: 301 TAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK-NGNWKSQ 359
+++E E + +++ E L +LK ++ ++ES L ++ + EL++ + +
Sbjct: 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEK 289
Query: 360 VDMYKKQMSELYNQFNEETKRADKSEF------ENKKLQEKVTSLQREKEKLIVERDSLK 413
++ ++ E+ E E + K L+E++ L+ + EKL E + L
Sbjct: 290 IERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELA 349
Query: 414 ETNEELKCCQLQQSKSAELNTLGENLDLSED---------SVPITELRQKLVRLTHENNM 464
E EL +L + + EL E L+ + I EL+++L L+
Sbjct: 350 EEKNELA--KLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEE 407
Query: 465 LQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEA-------------- 510
+Q + +++E +L + +L+++ +++K + + + L +
Sbjct: 408 IQE-ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE 466
Query: 511 --ELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSE 568
E E+ + ++++ E + + + ++ + EE ++ + +E+ + + +
Sbjct: 467 LPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEA 526
Query: 569 IQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKE 628
+++ E+ + +E + L +Q EL+ L + + ++L++L +KE
Sbjct: 527 LKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE 586
Query: 629 QQEKL 633
+ E+L
Sbjct: 587 ELEEL 591
Score = 36.7 bits (85), Expect = 0.050
Identities = 61/283 (21%), Positives = 122/283 (43%), Gaps = 27/283 (9%)
Query: 138 KIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCM 197
+ E +++ I + +EL L L + + L +L+ + + +++ +
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550
Query: 198 ELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESAR 257
+L Q+ L+EE L + + L+E +E R + KEEL +
Sbjct: 551 KL--QLQQLKEELRQLEDRLQELKELLEE-------------LRLLRTRKEELEELRERL 595
Query: 258 DDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKK 317
+ + KL+ +++ LE L SLE + L++ + L EK+ + E +
Sbjct: 596 KELKKKLKELEERLSQLEELLQSLE-LSEAENELEEAEEELESELEKLNLQAELEELLQA 654
Query: 318 KAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEE 377
EEL + ++++ + L I+ LEE+L++ +Q+ E Q EE
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEE-----------LEQLEEELEQLREE 703
Query: 378 TKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
+ K E ++L E++ S + E E+L E + L++ E L+
Sbjct: 704 LEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLE 746
Score = 29.7 bits (67), Expect = 6.5
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 200 DMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDD 259
+Q L E ++ L E + LE ++ ++ + + K E +AE R+
Sbjct: 615 LLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRREL 674
Query: 260 YRIKLEIQSKQ-MEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKK 318
RI+ E Q ++ +E+LE LE+ E L ++ + + E++E + +E KK+
Sbjct: 675 QRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKE 734
Query: 319 AEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
E+L + +++L K + L L +
Sbjct: 735 LEKLEKALELLEELREKLGKAGLRADILRNLLAQ 768
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 52.6 bits (126), Expect = 6e-07
Identities = 75/420 (17%), Positives = 176/420 (41%), Gaps = 50/420 (11%)
Query: 239 MRRQMDALKEELFKAESARDDYRIKL-EIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
+ + D L ++ + E DY L I+S + + +EE + + +
Sbjct: 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKK--------IEEYSKNIERMSAFISE 395
Query: 298 LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK-NGNW 356
+ + E + I + + +L D+ +V L + + + +L ++ NG
Sbjct: 396 ILKIQEIDP--DAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQS 453
Query: 357 KSQV---DMYKKQMSELYNQFNEETKR----ADKSEFENKKLQEKVTSLQREKE------ 403
V + +++ + + N +NE+ R + E E K + EK+ L++ KE
Sbjct: 454 VCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEE 513
Query: 404 --KLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHE 461
K I E + ++ +L+ +++ ++ + + E + S+ + +L K +
Sbjct: 514 INKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNA 573
Query: 462 NNMLQMNQKDDIEGKLNIVNAKLDDV---TQQVKMKTLENRKANQ---RILELEAELKER 515
++ + + + N + +L+D+ Q++++ +++ R +E EA
Sbjct: 574 LAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNN 633
Query: 516 VTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
+ K+ I +L+ +I N K+QI I IT + ++I+D +K
Sbjct: 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDS--------IIPDLKEITSRINDIEDNLKK 685
Query: 576 NRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIA 635
+RK ++ A + L+ T+ + LR + ++ ++D+ +TLE ++ +K I
Sbjct: 686 SRKALDDAKANRARLESTI---------EILRTRINELSDRINDINETLESMKKIKKAIG 736
Score = 43.4 bits (102), Expect = 4e-04
Identities = 74/426 (17%), Positives = 176/426 (41%), Gaps = 55/426 (12%)
Query: 242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
+++ +K+++ E + ++E S + + N+L+ E L+D +
Sbjct: 198 ELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYES- 256
Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNL--------SYIQQTLDLEEELKKN 353
+++ E + +K +L+++ ++ + + Y + D+E + +
Sbjct: 257 --EIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQIL 314
Query: 354 GNWKSQVDMYKKQMSEL------YNQFNEETKRADKSEFENKKLQE---KVTSLQREKEK 404
N ++++ Y + +L YN + ++ R D + +L+ S + E
Sbjct: 315 SNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIES 374
Query: 405 LIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNM 464
L + + + E + + K E++ +L+E +V + ++ K+ L
Sbjct: 375 LKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRA 434
Query: 465 LQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMK 524
L+ N D++ + ++N + V TL K+N + E + ++
Sbjct: 435 LREN-LDELSRNMEMLNGQ---SVCPVCGTTLGEEKSN--------HIINHYNEKKSRLE 482
Query: 525 VKIFELQNEIKNLKEQINHQQ--EEHLEQGK---------LIEKLQDSITQ---KDSEIQ 570
KI E++ E+K++ E+I + +E+LE + IE + + K +E++
Sbjct: 483 EKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELK 542
Query: 571 DYEEKNRKYIEKANSAFKLLDPTVQNVAALN--------ELKNLRKKNDDKDKMLDDLEK 622
D +K + + S KL D + + LN +++ R ++++ K L+DLE
Sbjct: 543 DKHDKYEEIKNRYKS-LKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLES 601
Query: 623 TLEKKE 628
L++ E
Sbjct: 602 RLQEIE 607
Score = 36.4 bits (84), Expect = 0.055
Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 20/177 (11%)
Query: 244 DALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAE 303
D +F + D Q K++ D L++NSLE + LKD +D+LR
Sbjct: 127 DVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDK---LKDVIDMLRA--- 180
Query: 304 KVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMY 363
++ + + E K EL ++KKQ+ E + +++ L E Y
Sbjct: 181 EISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIE-------------Y 227
Query: 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
M + YN E + + ++ + + + + + + KE E
Sbjct: 228 NNAMDD-YNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHM 283
Score = 35.6 bits (82), Expect = 0.10
Identities = 55/307 (17%), Positives = 124/307 (40%), Gaps = 26/307 (8%)
Query: 131 RKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARD 190
+ + Y I + + +++ + + + + +N+ L + + V+ L I A
Sbjct: 378 KIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQ-DISSKVSSLNQRIRA-- 434
Query: 191 QMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEEL 250
+ + EL + ML + C V EE+ + + N+ S + ++ ++ E+
Sbjct: 435 -LRENLDELSRNMEMLNGQSVCPVCGTTLGEEK-SNHIINHYNEKKSRLEEKIREIEIEV 492
Query: 251 FKAESARDDYRIKLE-IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYE 309
+ D + + E ++S+++ + N +E + L+D + E +K +KYE
Sbjct: 493 KDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARAD---LEDIKIKINELKDKHDKYE 549
Query: 310 GIIETYKKKAEELVDLKKQ--VKQLESKNLSYIQQTLDLEEELKKNGN------------ 355
I YK E +D K+ + L +L I+ E+KK N
Sbjct: 550 EIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIG 609
Query: 356 ---WKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412
KS +D +++ N N + +++ +KL+ K+ + +++ ++ L
Sbjct: 610 FPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDL 669
Query: 413 KETNEEL 419
KE +
Sbjct: 670 KEITSRI 676
Score = 29.1 bits (65), Expect = 9.0
Identities = 29/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 279 NSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESK--- 335
S+ E EA L ++ + ++E +EK G I+ YKK+ E+ + +K++ S+
Sbjct: 619 KSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRIND 678
Query: 336 ---NLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQ 392
NL ++ LD + +S +++ + +++EL ++ N+ + + KK++
Sbjct: 679 IEDNLKKSRKALD--DAKANRARLESTIEILRTRINELSDRINDINETLESM----KKIK 732
Query: 393 EKVTSLQREKEKL 405
+ + L+R +E
Sbjct: 733 KAIGDLKRLREAF 745
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 52.5 bits (125), Expect = 8e-07
Identities = 90/439 (20%), Positives = 180/439 (41%), Gaps = 26/439 (5%)
Query: 208 EEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQ 267
EEK E K++ EE + + K +++ DA K++ +A+ A + + + E
Sbjct: 1299 EEKKKADEAKKKAEEAKK---ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 268 SKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKK 327
+ + E E K + E+ EA+ D E +K ++ + E KKKA+EL K
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK--KA 1413
Query: 328 QVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETK--RADKSE 385
+ ++ + +E KK + D KK+ E + K A K++
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
Query: 386 FENKKLQE--KVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSE 443
KK +E K +++ E+ + D K+ E K + ++K AE + +E
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK--KADEAKKAEEAKKADEAKKAE 1531
Query: 444 DSVPITELRQ-----------KLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVK 492
++ E ++ K L + + E N+ K ++ + +
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
Query: 493 MKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQG 552
+ E K + +++AE E + A +K + + E K EQ+ ++ E ++
Sbjct: 1592 ARIEEVMKLYEEEKKMKAE--EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
Query: 553 KLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDD 612
+ ++K ++ K +E E+++K E+A A + D A E + +K +
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE--DEKKAAEALKKEAEEAKKAEEL 1707
Query: 613 KDKMLDDLEKTLEKKEQQE 631
K K ++ +K E K+ +E
Sbjct: 1708 KKKEAEEKKKAEELKKAEE 1726
Score = 42.4 bits (99), Expect = 0.001
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 14/214 (6%)
Query: 208 EEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALK-EELFKAESARDDYRIKLEI 266
EEK E K+ E + E + + + M K EE KAE AR + +KL
Sbjct: 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
Query: 267 QSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLK 326
+ K+M+ E K +E I E +K E+ + +E KKK E
Sbjct: 1603 EEKKMKAEEAKK-------------AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
Query: 327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEF 386
+++K+ E +N + EE KK + + +K+ +E + EE K+A++ +
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Query: 387 ENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
+ + ++K L++ +E+ ++ + K+ EE K
Sbjct: 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 45.8 bits (109), Expect = 7e-05
Identities = 85/487 (17%), Positives = 195/487 (40%), Gaps = 67/487 (13%)
Query: 181 ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMR 240
E V++ ++ + L+ ++ L+E + E+ L E ++
Sbjct: 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRD-------------- 283
Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
L+E L + E RDD + + E +E + LE+ E R D L E
Sbjct: 284 -----LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR------DRLEE 332
Query: 301 TAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQV 360
+ + E+ ++ A LE + ++ +LE EL++ + V
Sbjct: 333 CRVAAQAHNEEAESLREDA----------DDLEERAEELREEAAELESELEEA---REAV 379
Query: 361 DMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
+ ++++ EL + E +R + + ++ + L+ E+++L R+ E L+
Sbjct: 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL---REREAELEATLR 436
Query: 421 CCQLQQSKSAEL------NTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE 474
+ + ++ L G+ ++ S I E R+++ L E +D+E
Sbjct: 437 TARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAE--------LEDLE 488
Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQR--ILELEAELKERVTEDAAGMKVKIFELQN 532
++ V +L+ V+ + R +R + EL AE +E + E + EL+
Sbjct: 489 EEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRE----RAEELRE 544
Query: 533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP 592
L+ + ++E E + E+ ++ + + +S++ + +E+ + +E+ + +
Sbjct: 545 RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER-IESLERIRTLLAAIAD 603
Query: 593 TVQNVAALNE-LKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTAD 651
+ L E + L + ND++ + L EK K+E + + ++ ++ A+
Sbjct: 604 AEDEIERLREKREALAELNDERRERLA--EKRERKRELEAEFDEARIE--EAREDKERAE 659
Query: 652 NRLASIT 658
L +
Sbjct: 660 EYLEQVE 666
Score = 42.3 bits (100), Expect = 0.001
Identities = 73/410 (17%), Positives = 165/410 (40%), Gaps = 62/410 (15%)
Query: 172 DPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEP 231
D + + A + + D +++ R E + EE L E+ LEER +E
Sbjct: 306 DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE----- 360
Query: 232 TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYL 291
+R + L+ EL +A A +D R ++E +++E+L + G A
Sbjct: 361 -------LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413
Query: 292 KDEVD---------------ILRETAEKVEKYEGIIETYK-----------KKAEELVDL 325
+E+ LR E+VE+ E ++E K E + +
Sbjct: 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEED 473
Query: 326 KKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSE 385
+++V++LE++ ++ ++EE L++ + + ++ L + + + +
Sbjct: 474 RERVEELEAELEDLEEEVEEVEERLERAEDLVEA----EDRIERLEERREDLEELIAERR 529
Query: 386 FENKKLQEKVTSLQREKEKLIVE-----------RDSLKETNEELKCCQLQQSKSAELNT 434
++ +E+ L+ +L E + +E EE+ SK AEL
Sbjct: 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAEL---NSKLAELKE 586
Query: 435 LGENLD-LSEDSVPITELRQKLVRLTHENNMLQM--NQKDDIEGKLNIVNAKLDDVTQQV 491
E+L+ + I + ++ RL + L +++ + + +L+ +
Sbjct: 587 RIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA 646
Query: 492 KMKTLENRKAN--QRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKE 539
+++ K + + ++E +L E E+ ++ +I ++NE++ L+E
Sbjct: 647 RIEEAREDKERAEEYLEQVEEKLDEL-REERDDLQAEIGAVENELEELEE 695
Score = 35.8 bits (83), Expect = 0.086
Identities = 98/463 (21%), Positives = 204/463 (44%), Gaps = 64/463 (13%)
Query: 206 LQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLE 265
L +++ L + K ++EE+ +++ E N + ++ L EE+ + E R+ R
Sbjct: 182 LSDQRGSLDQLKAQIEEKEEKDLHERLN----GLESELAELDEEIERYEEQREQAR---- 233
Query: 266 IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKK---AEEL 322
+ ++ + L EE E L+ E++ LRET I ET +++ AEE+
Sbjct: 234 ---ETRDEADEVLEEHEERREELETLEAEIEDLRET---------IAETEREREELAEEV 281
Query: 323 VDLKKQVKQLESKNLSYIQQT----------LDLEEEL-KKNGNWKSQVDMYKKQMSELY 371
DL++++++LE + + + EEL ++ + +++ +
Sbjct: 282 RDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
Query: 372 NQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAE 431
+ + AD E ++L+E+ L+ E E+ + +E EEL+ + +
Sbjct: 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE--EEIEELRER 399
Query: 432 LNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQM---NQKDDIEGKLNIVNA-KLDDV 487
+L +ED + ELR++ L L+ ++ +E ++ A K +
Sbjct: 400 FGDAPVDLGNAEDF--LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPEC 457
Query: 488 TQQVK----MKTLENRKANQRILELEAEL----------KERVT--EDAAGMKVKIFELQ 531
Q V+ ++T+E + +R+ ELEAEL +ER+ ED + +I L+
Sbjct: 458 GQPVEGSPHVETIEEDR--ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLE 515
Query: 532 NEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLD 591
++L+E I ++E E+ + E+L++ + ++E ++ E + E+A A + +
Sbjct: 516 ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA 575
Query: 592 PTVQNVAALNE----LKNLRKKNDDKDKMLDDLEKTLEKKEQQ 630
+A L E L+ +R D++E+ EK+E
Sbjct: 576 ELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAL 618
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 42.3 bits (100), Expect = 2e-04
Identities = 20/99 (20%), Positives = 55/99 (55%)
Query: 319 AEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEET 378
E L +L++++ +L+ + +Q +L++E ++ S ++ +++ + + + +
Sbjct: 65 RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124
Query: 379 KRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417
A + + EN++L+E++ L++E E L E + L+E +
Sbjct: 125 ANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 35.8 bits (83), Expect = 0.044
Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 261 RIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAE-KVEKYEGIIETYKKKA 319
R +L +++ +L+ +L L+E E + E+ T E ++E+ + + K+ +
Sbjct: 65 RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124
Query: 320 EELVDLKKQVKQLESKNLSYIQQTLDLEEEL 350
++L ++ ++L + Q+ LE E
Sbjct: 125 ANAIELDEENRELREELAELKQENEALEAEN 155
Score = 33.8 bits (78), Expect = 0.16
Identities = 19/99 (19%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 529 ELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588
ELQ E+ L+E++ QE+ E + ++L+ ++ ++E++ +++ + + + +A +
Sbjct: 70 ELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIE 129
Query: 589 LLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK 627
L + +N EL L+++N+ + + L++ +++
Sbjct: 130 LDE---ENRELREELAELKQENEALEAENERLQENEQRR 165
Score = 29.2 bits (66), Expect = 5.4
Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 387 ENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSV 446
+ +E++ LQ+E +L E L+E EL+ + Q+ K E L ++
Sbjct: 60 DTPSARERLPELQQELAELQEELAELQEQLAELQ-QENQELKQELSTLEAELERLQKELA 118
Query: 447 PITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMK 494
I +L + L EN L+ + +++ + + A+ + + + + +
Sbjct: 119 RIKQLSANAIELDEENRELR-EELAELKQENEALEAENERLQENEQRR 165
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 41.8 bits (99), Expect = 0.001
Identities = 63/329 (19%), Positives = 119/329 (36%), Gaps = 74/329 (22%)
Query: 240 RRQMDALKEEL----------FKAESARDDYRIKLEIQSKQMEDLEL------KLNSLEE 283
+ D + E L K E + + R + +K E L+ KLN L E
Sbjct: 15 KSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLRE 74
Query: 284 TAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQT 343
+ E +++++ E++EK E + K+ EE+ +L+ ++K+LE +
Sbjct: 75 EKKKVSVKSLE-ELIKDVEEELEKIE---KEIKELEEEISELENEIKELEQE-------- 122
Query: 344 LDLEEELKKNGNWKS-QVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREK 402
E L+ W + +D+ + + F E + + E V + +K
Sbjct: 123 ---IERLEP---WGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDK 176
Query: 403 EK----LIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRL 458
++V ++ E EELK E L+L E+ P +R+ L
Sbjct: 177 GYVYVVVVVLKELSDEVEEELKKLGF------------ERLELEEEGTPSELIREIKEEL 224
Query: 459 THENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTE 518
+++ + +L + K + + LE EA K T+
Sbjct: 225 EEIE-----KERESLLEELKELAKKYLEELLALYEY-LEIELE-----RAEALSKFLKTD 273
Query: 519 DAAGMKVKIFELQ-----NEIKNLKEQIN 542
K F ++ + +K LKE I+
Sbjct: 274 -------KTFAIEGWVPEDRVKKLKELID 295
Score = 30.7 bits (70), Expect = 3.2
Identities = 40/253 (15%), Positives = 100/253 (39%), Gaps = 30/253 (11%)
Query: 321 ELVDLKKQVKQLE----SKNLSYIQQTLD-LEEELKKNGNWKSQVDMYKKQMSELYNQFN 375
+ DLK+++ L+ + + LD L L K + + + E
Sbjct: 32 HIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLE--ELIK 89
Query: 376 EETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL---KETNEELKCCQLQQSKSAEL 432
+ + +K E E K+L+E+++ L+ E ++L E + L + +L + S +
Sbjct: 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFV 149
Query: 433 NTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVK 492
T+ E+ E + + ++ + K+ + ++ KL +
Sbjct: 150 GTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSD-EVEEELKKLG----FER 204
Query: 493 MKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQG 552
++ E ++ I E++ EL+E ++ E ++L E++ +++LE+
Sbjct: 205 LELEEEGTPSELIREIKEELEE---------------IEKERESLLEELKELAKKYLEEL 249
Query: 553 KLIEKLQDSITQK 565
+ + + ++
Sbjct: 250 LALYEYLEIELER 262
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 41.9 bits (98), Expect = 0.001
Identities = 58/404 (14%), Positives = 149/404 (36%), Gaps = 8/404 (1%)
Query: 233 NKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK 292
+ N + + K +D KL +K E K SLEE E LK
Sbjct: 607 AQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELK 666
Query: 293 DEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
+ L + ++ + E+ K E L ++ ++++ K ++ L+ E ++
Sbjct: 667 ASLSELTKELLAEQELQEKAESELAKNEIL----RRQEEIKKKEQRIKEELKKLKLEKEE 722
Query: 353 NGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412
K Q K + + K ++ + KK +E+ + K +
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELS-LKEKELAEEE 781
Query: 413 KETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDD 472
++T + + ++ A+ L + ++ + E Q L+ + ++ +
Sbjct: 782 EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL 841
Query: 473 IEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQN 532
+ + ++ ++++ + + + +L+ E ++++ ++ + K E +
Sbjct: 842 ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKK 901
Query: 533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP 592
E++ ++ N +E+ E + I + + + +SE E + EK +
Sbjct: 902 ELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEP--EELLLEEADEKEKEEDNKEEE 959
Query: 593 TVQNVAALNELKNLRKKN-DDKDKMLDDLEKTLEKKEQQEKLIA 635
+N L + L N + + E+ + + ++E+L
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEE 1003
Score = 35.7 bits (82), Expect = 0.088
Identities = 61/357 (17%), Positives = 143/357 (40%), Gaps = 28/357 (7%)
Query: 279 NSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLS 338
+EE A +R + + + L++ E+ E +I ++ + + LK+Q +K
Sbjct: 157 LEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQ-----AKKAL 211
Query: 339 YIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSL 398
Q + E ++N + + + ++++ L +E + + S+ E +K +E L
Sbjct: 212 EYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEI---L 268
Query: 399 QREKEKLIVERDSLKETNEELKCCQLQ-QSKSAELNTLGENLDLSEDSVPITELRQKLVR 457
+ ++ E K EELK + + +EL L E+ + +E K +
Sbjct: 269 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328
Query: 458 LTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVT 517
+ ++ + + +L I ++ +Q++ + + + +L + ER++
Sbjct: 329 KELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLS 388
Query: 518 EDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQ-GKLIEKLQDSITQKDSEIQDYEEKN 576
A K+ E + E+KN +E+ E EQ L+++ + + E+++ E
Sbjct: 389 SAA-----KLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETK 443
Query: 577 RKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKL 633
+ + + L + K+ + K +DL K + + E+L
Sbjct: 444 QGKLTEEK-------------EELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQL 487
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 40.1 bits (94), Expect = 0.005
Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 26/197 (13%)
Query: 244 DALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETA- 302
L+E L +AE A K + +Q+ +L + EAR + + +
Sbjct: 603 TELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQ 662
Query: 303 -----EKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLD--LEEELKKNGN 355
K + I E ++ +L L Q+KQL + ++++ D E ++
Sbjct: 663 NEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAK 722
Query: 356 WK-------SQVDMYKKQ-----------MSELYNQFNEETKRADKSEFENKKLQEKVTS 397
W+ +Q+ + EL Q++ E D K+L+ ++
Sbjct: 723 WQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEE 782
Query: 398 LQREKEKLIVERDSLKE 414
L+ E++ V R ++E
Sbjct: 783 LETTIERIAVRRPEVRE 799
Score = 33.9 bits (78), Expect = 0.33
Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 26/256 (10%)
Query: 390 KLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPIT 449
+ +E+ + R +++L D LKE +EL Q + +A+L L+L ED
Sbjct: 282 EQEERQEAKNRLRQQLRTLEDQLKEARDELN--QELSAANAKLAADRSELELLEDQ---- 335
Query: 450 ELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELE 509
+ E ++Q I +L V A+LD +T + + + + Q+I E
Sbjct: 336 --KGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQL 393
Query: 510 AELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKL--------------- 554
E+ E A ++ + + I+ + + Q + LE GKL
Sbjct: 394 ERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGR 453
Query: 555 IEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKD 614
+++ DS T E++ E + +EKA + +EL+ LRK+ D+
Sbjct: 454 LKQRLDSATATPEELEQLEINDEA-LEKAQEEQEQA--EANVEQLQSELRQLRKRRDEAL 510
Query: 615 KMLDDLEKTLEKKEQQ 630
+ L E+ L + Q
Sbjct: 511 EALQRAERRLLQLRQA 526
Score = 32.0 bits (73), Expect = 1.3
Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 45/279 (16%)
Query: 398 LQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVR 457
LQ+ +E L K+ E+L +AEL + ++ L L R
Sbjct: 609 LQQAEEALQSAVAKQKQAEEQL------VQANAELEEQKRAEAEARTALKQARLD--LQR 660
Query: 458 LTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVT 517
L +E L+ + I + +L + Q+K + + + L+ + +E T
Sbjct: 661 LQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLE---ALKDDFRELRT 717
Query: 518 EDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQD----------------- 560
E A +V EL N++ L I + + + K ++K D
Sbjct: 718 ERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELK 777
Query: 561 ----SITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALN-ELKNLRKKNDDKDK 615
+ I + R+Y + D + L +L+ L
Sbjct: 778 RQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESS------ 831
Query: 616 MLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRL 654
++L++ L + + KL L+++R+ + +L
Sbjct: 832 -AEELQQELTRLIKDTKLRRK-----KLEQERKALEKQL 864
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 38.8 bits (91), Expect = 0.011
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 281 LEETAGEA--RYLKDEVDILRETA-------EKVEKYEGIIETYKKKAEELVDLKKQVKQ 331
+E GEA YL+++ D+L+E A E + K E ++E K+ +EL LKK++
Sbjct: 698 IEAVTGEAALEYLQEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAA 757
Query: 332 LESKNLSYIQQTLDL--------EEELKKNGNWKSQVDMYKKQ 366
E +L + ++ E + + D KK+
Sbjct: 758 AELADLLSNAKAEEIGGVKVLAKEVDGADMKELREIADDLKKK 800
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 37.7 bits (88), Expect = 0.023
Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 11/171 (6%)
Query: 462 NNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAA 521
N +LQ D I N NA+ + ++ + N N R EL ++ E E
Sbjct: 761 NILLQEIAYDVIVSLFNNPNAEKILIITEILSDGINNSDINDRPQELIDQIIESEEERLK 820
Query: 522 GMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIE 581
++++ E+ + L+ Q+ E + SEIQ+ EE+ + E
Sbjct: 821 ALRIQREEMLMRPEELELINEEQKNLKQEIKLEL-----------SEIQEAEEEIQNINE 869
Query: 582 KANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEK 632
N + + + + L K D++ D + T +KK+ EK
Sbjct: 870 NKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEK 920
Score = 29.6 bits (67), Expect = 7.2
Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 8/157 (5%)
Query: 263 KLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEEL 322
K + E+ + + + R + I+ E+++ E + EEL
Sbjct: 777 NNPNAEKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEEL 836
Query: 323 VDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRAD 382
+ ++ K L+ + + + + EEE++ K + E N + K
Sbjct: 837 ELINEEQKNLKQEIKLELSEIQEAEEEIQNINEN-------KNEFVEFKNDPKKLNKLII 889
Query: 383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
+ K + Q +++ ++ L++T+EE
Sbjct: 890 AKDVLIKLVISSDEIKQ-DEKTTKKKKKDLEKTDEEA 925
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 37.6 bits (88), Expect = 0.023
Identities = 80/408 (19%), Positives = 162/408 (39%), Gaps = 91/408 (22%)
Query: 277 KLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKA----EELVDLKKQVKQL 332
LN + E + ++ +++ +K+++ + E K++ +L + +++ L
Sbjct: 47 ALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL 106
Query: 333 ESKNLSYIQQTLD----------LEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRAD 382
+ N ++TL L + L + N ++ + Y Q+ L Q +RA
Sbjct: 107 KDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQ----PERAQ 162
Query: 383 KSEFEN-KKLQE---KVTSLQREKEKLIVERDSLKETNEELKCCQLQ---QSKSAELNTL 435
+ + N ++LQ+ + + + L + L + E Q Q KS E NT
Sbjct: 163 AALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQA--EQALLNAQNDLQRKSLEGNTQ 220
Query: 436 GENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKT 495
++L + L ++ RL H+ +LQ +N+K ++++ ++
Sbjct: 221 LQDLLQKQRD----YLTARIQRLEHQLQLLQ-----------EAINSKRLTLSEK-TVQE 264
Query: 496 LENRKANQRI---------LELEAELKERV----------TEDAAGMKVKIFELQNEIKN 536
+++ RI LE+ +L +R+ T+ +K + L +N
Sbjct: 265 AQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERN 324
Query: 537 LKEQIN------------HQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRK------ 578
+KEQI+ +QQ++ L LIE L D I E + ++
Sbjct: 325 IKEQISVLKGSLLLSRILYQQQQALPSADLIEGLADRIADLRLEQFEINQQRDALFQPDA 384
Query: 579 YIEK--ANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTL 624
YI+K A + V++ AL +L + R+ ++LD L K L
Sbjct: 385 YIDKLEAGHK-SEVTDEVRD--ALLQLLDERR------ELLDQLNKQL 423
Score = 31.4 bits (72), Expect = 2.1
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 529 ELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588
++Q ++ L +Q + E+ L Q L E+ + + I +E+ + ++ A
Sbjct: 40 DVQAQLDALNKQKLLEAEDKLVQQDL-EQTLALLDK----IDRQKEETEQLKQQLAQAPA 94
Query: 589 LLDPTVQNVAALNELKNLRKKNDDKDKM------LDDLEKTLEKKEQQ 630
L A EL+ L+ ND++ + L LE L + Q
Sbjct: 95 KLR------QAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQ 136
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 37.5 bits (88), Expect = 0.023
Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 44/221 (19%)
Query: 394 KVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQ 453
+++ L E+E E + L + + + E+ L + I +
Sbjct: 99 RISKLSDEEEFFEAEIELLPDEPID---------EEREIEALVRS---------ILSEFE 140
Query: 454 KLVRLTHENNMLQMNQKDDIE--GKL-NIVNAKLDDVTQQVKMKTLENRKANQRILELEA 510
+ +L + ++ + I+ GKL + + A L + + K + LE +R+ +L
Sbjct: 141 EYAKLNKKIPPEELQSLNSIDDPGKLADTIAAHLP-LKLEEKQEILETLDVKERLEKLLD 199
Query: 511 ELKERVTEDAAGMKVKIFELQNEIKN-LKEQINHQQEEHL--EQGKLIEKLQDSITQKDS 567
L++ + + +L+ I+ +KEQ+ Q E+ EQ K I+K
Sbjct: 200 LLEKEI---------DLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKD 250
Query: 568 EIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRK 608
E+++ EK IEK L + A ELK L
Sbjct: 251 EVEELREK----IEKLK-----LPKEAKEK-AEKELKKLET 281
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 37.3 bits (87), Expect = 0.027
Identities = 66/310 (21%), Positives = 125/310 (40%), Gaps = 65/310 (20%)
Query: 246 LKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKV 305
+ +EL +A++A+ Q++ +E L+ LN LEE + + E+
Sbjct: 28 ITQELEQAKAAKTPA------QAEIVEALQSALNWLEER--------------KGSLERA 67
Query: 306 EKYEGIIETYKKKAEELVDLKKQVKQLESKNLSY--IQQTLDLEEELKKNGNWKSQVDMY 363
++Y+ +I+ + K + E L++Q+ + S T LE+E+ + +
Sbjct: 68 KQYQQVIDNFPKLSAE---LRQQLNNERDEPRSVPPNMSTDALEQEILQVSS-------- 116
Query: 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLI--VER--DSLKETNEEL 419
Q+ E Q +E RA E ++ Q E + + +ER +L N L
Sbjct: 117 --QLLEKSRQAQQEQDRAR----EISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPL 170
Query: 420 KCCQL--QQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKL 477
QL Q++SA L L + L+L++ S RQ+L RL E L + ++ L
Sbjct: 171 AQAQLTALQAESAALKALVDELELAQLS---ANNRQELARLRSE---LAKKRSQQLDAYL 224
Query: 478 NIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNL 537
+ +L+ Q+ + LE+ E + E + + I + L
Sbjct: 225 QALRNQLNSQRQREAERALES--------------TELLAEQSGDLPKSIVAQFKINREL 270
Query: 538 KEQINHQQEE 547
+ +N Q +
Sbjct: 271 SQALNQQAQR 280
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 37.3 bits (87), Expect = 0.028
Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 39/236 (16%)
Query: 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN 416
+ Q+ Y K + E + E R Q K L E + + E + L
Sbjct: 194 QQQIKTYNKNIEEQRKKNGENIAR----------KQNKYDELVEEAKTIKAEIEEL---T 240
Query: 417 EELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQ-----KD 471
+EL + + L++ + +++ K+ + M +
Sbjct: 241 DELLNLVMDIEDPSA--------ALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQ 292
Query: 472 DIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQ 531
I ++ + ++K K + I EL+E + E K+ EL+
Sbjct: 293 QISEG----PDRITKIKDKLKELQHSLEKLDTAI----DELEEIMDE-FNEQSKKLLELK 343
Query: 532 NEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEI----QDYEEKNRKYIEKA 583
N+I K+ + ++ + IE+LQ E+ + ++ + E
Sbjct: 344 NKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV 399
>gnl|CDD|112953 pfam04163, Tht1, Tht1-like nuclear fusion protein.
Length = 554
Score = 37.0 bits (85), Expect = 0.035
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 19/182 (10%)
Query: 453 QKLVRLTHENNMLQMNQKDDIEGKLNIV------NAKLDDVTQQVKMKTLENRKANQRIL 506
L + E L+ ++ IE LNI LD + +E K NQ I
Sbjct: 144 HDLNHICREAL-LEFEKELIIELFLNITELQDQFGDDLDMKILHLMNFEMEQDKMNQFID 202
Query: 507 ELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKL---IEKLQDSIT 563
+ + + E + F + EI +L E NHQQE + Q ++ IE+L+ I
Sbjct: 203 DFAGKFRNSDIELR--FADENFRIILEIMDLSEFQNHQQEGKVNQDEILETIEQLESEIF 260
Query: 564 QKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKT 623
+S ++ E E A +++ A+ N + L D KD L LE
Sbjct: 261 DINSFFANFIE------ESAGVHNHIIEDLADEFASENAIA-LSAIGDLKDDFLAFLEDR 313
Query: 624 LE 625
++
Sbjct: 314 IK 315
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 36.9 bits (86), Expect = 0.039
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 204 SMLQEEKSCLVEEKRRLEERFQENFVEPTN-KGNSSMRRQMDALKEELFKAESARDDYRI 262
L++E + L EE LEE+++ E +G ++ +++ ++ EL +AE D
Sbjct: 437 EDLEKELAELEEEYADLEEQWKA---EKAAIQGIQQIKEEIEQVRLELEQAER-EGDLAK 492
Query: 263 KLEIQSKQMEDLELKLNSLEETAGEA---RYLKDEVDILRETAEKVEKYEGI 311
E+Q ++ +LE +L + E GE R L++EV E AE V ++ GI
Sbjct: 493 AAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTA-EEIAEVVSRWTGI 543
Score = 31.9 bits (73), Expect = 1.2
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 55/190 (28%)
Query: 261 RIKLEIQSK--QMEDLELKLNSLEETAGEARYLKDEVDIL-RETAEKVEKYEGIIETYKK 317
RI++EI SK ++++L+ ++ LE E LK E D +E E +EK
Sbjct: 395 RIRMEIDSKPEELDELDRRIIQLEI---EREALKKEKDEASKERLEDLEK---------- 441
Query: 318 KAEELVDLKKQVKQLESKNLS---YIQQTLDLEEELKKNGNWKSQVDMYKKQ-----MSE 369
EL +L+++ LE + + IQ ++EE+++ + +++ +++ +E
Sbjct: 442 ---ELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQV---RLELEQAEREGDLAKAAE 495
Query: 370 L-YNQFNEETKR------ADKSEFENKKLQEKVTS------------------LQREKEK 404
L Y + E KR E + + L+E+VT+ L+ E+EK
Sbjct: 496 LQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREK 555
Query: 405 LIVERDSLKE 414
L+ + L E
Sbjct: 556 LLHMEEVLHE 565
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 36.8 bits (86), Expect = 0.042
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 281 LEETAGEA--RYLKDEVDILRETAEKVE-KYEGIIETYKKKAEELVDLKKQVKQLESKNL 337
LE AG+A Y+++ D+L+E AE + E + +T ++ EE + KK++++L +
Sbjct: 726 LEFAAGDAAVEYIQELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELA 785
Query: 338 SYIQQTLDLEEE 349
+ L + E
Sbjct: 786 ELLASELLSKAE 797
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 36.6 bits (85), Expect = 0.049
Identities = 55/362 (15%), Positives = 115/362 (31%), Gaps = 76/362 (20%)
Query: 285 AGEARYLKDEVDILRETA-------EKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNL 337
G L + L + E+ EK +E K + L + ++
Sbjct: 12 IGLKSELDPVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLR 71
Query: 338 SY---IQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEK 394
S + L EE++K ++ K + ++ E T +KL+E+
Sbjct: 72 SVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELT----------RKLEER 121
Query: 395 VTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQK 454
++ L E E L L L L D L +
Sbjct: 122 LSELDEELEDLE-----------------------DLLEELEPLAYLDFD----LSLLRG 154
Query: 455 LVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKE 514
L L L + +++ KL + ++D V + + ++ AE +
Sbjct: 155 LKFLLVR---LGLVRRE----KLEALVGVIEDE---VALYGENVEASVVIVVAHGAEDLD 204
Query: 515 RVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEE 574
+V++ + +++E+ E +LI +L++ I + E++
Sbjct: 205 KVSKILNELGFELYEV--------------PEFDGGPSELISELEEVIAEIQDELESLRS 250
Query: 575 KNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLI 634
+ EK + ++ AL ++ + + + +E + E EKL
Sbjct: 251 ELEALAEKIAEELLAVREILEIEKALGDVLSKLA----RTEYTLAIEGWVPADE-VEKLK 305
Query: 635 AT 636
Sbjct: 306 KI 307
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 36.1 bits (84), Expect = 0.059
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSA 586
+F L E ++ QI ++E ++KL++ I Q ++EI+ EE+ K K
Sbjct: 83 VFTLGEENIEIEAQIEELKKE-------LKKLEEKIEQLEAEIEKKEEELEKAKNKFLDK 135
Query: 587 FKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKK------EQQEKLIATAF 638
+ LK L K + K+K+L +L+ + E+ + I T F
Sbjct: 136 AWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLF 193
Score = 31.9 bits (73), Expect = 1.2
Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 244 DALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAE 303
+ +E + + E D Y +E +++E + E + LK ++ L E E
Sbjct: 278 EEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILE 337
Query: 304 KV-----EKYEGI-----IETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353
K EK + +E+ E + D+ + +L ++ I + + KK
Sbjct: 338 KNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKAKKK 397
Query: 354 ------GNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIV 407
K +D Y+K+ L N K + E E K L++++ L+++ L
Sbjct: 398 LWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ---LTN 454
Query: 408 ERDSLKETNEELK 420
+ E N+ LK
Sbjct: 455 IEPTADEINKLLK 467
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 36.2 bits (84), Expect = 0.067
Identities = 79/421 (18%), Positives = 160/421 (38%), Gaps = 59/421 (14%)
Query: 219 RLEERFQENFVEPTNKGNSSMRR-QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELK 277
+LEER E P N S +++ + E F E R + +I + D+E
Sbjct: 32 KLEERKNELLNLPVNDEISKVKKLHLTGQTETKF--EEWRQKW---DDIVTNSFADVEEH 86
Query: 278 LNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNL 337
L E A + R+ K +++ E + ++ E++++ ++ + E KN
Sbjct: 87 LFEAEALADKFRFNK--------AKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNS 138
Query: 338 SYIQQTLDLEEELKKN-----GNWKSQVDMYKKQMS---ELYNQFNEETKRADKSEFENK 389
I L+L EEL+++ + +K++ E +QF E T D E
Sbjct: 139 EEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEARE- 197
Query: 390 KLQEKVTSLQREKEKLIVERDSLKETNEELKCC------QLQQSKSAELNTLGENLDLSE 443
L+ +E +I R ++ L QLQ K+ + E L
Sbjct: 198 -------VLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEH 250
Query: 444 DSVP--ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKA 501
++ + L+++LV + L++ D+ E +L ++ K++ +
Sbjct: 251 VNIDSRLERLKEQLVENSELLTQLEL---DEAEEELGLIQEKIESLYD------------ 295
Query: 502 NQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDS 561
+LE E E K V E+ + + + + ++LKE+I +E + + ++
Sbjct: 296 ---LLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKF 352
Query: 562 ITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLE 621
+ +E IE A+ L ++ + L ++ + + + L L
Sbjct: 353 EKELKELESVLDEILEN-IEAQEVAYSELQDNLEEIE--KALTDIEDEQEKVQEHLTSLR 409
Query: 622 K 622
K
Sbjct: 410 K 410
>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353).
Members of this family of uncharacterized proteins have
no known function.
Length = 319
Score = 35.2 bits (81), Expect = 0.10
Identities = 34/170 (20%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 246 LKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET-AEK 304
L ++L K ++ RD +++ E + +L+ LE A +K + R+ ++
Sbjct: 14 LGQDLEKCQNERDQFKLMAETLQMRYRNLKKSERELELVAACQGDMKIKPGTKRQDLSQL 73
Query: 305 VEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYK 364
+EKY E ++ + ++ +L+++ +L+ Q E G
Sbjct: 74 LEKYR---EENQQLSTDVQELRQRKAELQGDIKLLRQTIAQQRVEFMGGG---------- 120
Query: 365 KQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
+ E + + N+ + +K + K+L+ + SL EKE++++ERD +
Sbjct: 121 --VRESFEERNDLVSQLEKLREKCKQLESDLRSLLDEKEEVLMERDEYQR 168
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 35.5 bits (82), Expect = 0.11
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 499 RKANQRILELEAELKERVTEDAAGMKVK-IFELQNEIKNLKEQINHQQEEHLEQGKLIEK 557
K + E E E + K I +L+ ++ L+E+ + + E E + IEK
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 558 LQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKML 617
L+ + + E++D K+R+ + ++ L K+ ++K K +
Sbjct: 455 LESELERFRREVRDKVRKDREIRAR-----------------DRRIERLEKELEEKKKRV 497
Query: 618 DDLEKTLEKKEQQEKL 633
++LE+ L + + KL
Sbjct: 498 EELERKLAELRKMRKL 513
Score = 30.4 bits (69), Expect = 3.3
Identities = 27/129 (20%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 243 MDALKEELFKAE-SARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
+EE + + ++ R ++ + K+++ LE + LEE E LK E++ L+
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEE---ENSELKRELEELKR- 450
Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD 361
++EK E +E ++++ + V ++++ + + LE+EL+ K +V+
Sbjct: 451 --EIEKLESELERFRREVRDKVRKDREIRARDRRI-------ERLEKELE---EKKKRVE 498
Query: 362 MYKKQMSEL 370
+++++EL
Sbjct: 499 ELERKLAEL 507
Score = 30.4 bits (69), Expect = 4.2
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 378 TKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK-ETNEELKCCQLQQSKSAELNTLG 436
+ ++ E EN +L+ ++ L+RE EKL E + + E ++++ + +++ + L
Sbjct: 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERL- 486
Query: 437 ENLDLSEDSVPITELRQKLVRL 458
+L E + EL +KL L
Sbjct: 487 -EKELEEKKKRVEELERKLAEL 507
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 35.4 bits (81), Expect = 0.11
Identities = 60/362 (16%), Positives = 144/362 (39%), Gaps = 16/362 (4%)
Query: 239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDIL 298
+ + + LK+EL AE + +LE + +EDL+LKL E+ +A+ + +
Sbjct: 41 AQEEANKLKKELEVAEKEKLQVLKELESTKRTVEDLKLKLEKAEKEEQQAKQDSELAKLR 100
Query: 299 RETAEK------VEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
E E+ VE+Y EEL ++++ L + + +++ + K
Sbjct: 101 AEELEQGIQELEVERYITATAELDSVKEELRKIRQEYDALVEERDAALKRAEEAICASKV 160
Query: 353 NGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFE-NKKLQEKVTSLQREKEKLIVERDS 411
N ++ M E + + A++ + + + ++E ++ E +
Sbjct: 161 NEKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKELER 220
Query: 412 LKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPIT----ELRQKLVRLTHENNMLQM 467
LK+ + K + SAEL +L + + + + E + L + E L+
Sbjct: 221 LKQDLDPEKDLEKLAEASAELESLQKEISIMASVASVLKELEEAKANLEKAAEEEKSLR- 279
Query: 468 NQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI 527
N + ++ +L +L+++ ++ + ++E + + E + +K+
Sbjct: 280 NLVESLKQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKL 339
Query: 528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAF 587
+ +E + +++ +EE + + E+ + ++ + E K E A +A
Sbjct: 340 QQASSEAEEARKEAEAAREELRKLKEEAEQTKAAL----ETAELRLEAALKEAEAAKAAE 395
Query: 588 KL 589
L
Sbjct: 396 AL 397
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 35.1 bits (82), Expect = 0.12
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 496 LENRKANQRILELEAE----LKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQ 551
+ + A +I E E E L+E E A K + E + EI L+ + ++E E+
Sbjct: 24 VRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEF---EKELRER 80
Query: 552 GKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKND 611
++KL+ + QK+ + ++ + +EK EL+ K+ +
Sbjct: 81 RNELQKLEKRLLQKEENL----DRKLELLEKRE----------------EELEKKEKELE 120
Query: 612 DKDKMLDDLEKTLEKK--EQQEKL 633
K + L+ E+ LE+ EQ ++L
Sbjct: 121 QKQQELEKKEEELEELIEEQLQEL 144
Score = 32.4 bits (75), Expect = 0.75
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 492 KMKTLENRKANQRI-LELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLE 550
K LE ++ ++ E E EL+ER + ++ +L+ + +E ++ + E +
Sbjct: 56 KEALLEAKEEIHKLRNEFEKELRER--------RNELQKLEKRLLQKEENLDRKLELLEK 107
Query: 551 QGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKAN 584
+ + +EK + + QK E++ EE+ + IE+
Sbjct: 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQL 141
Score = 32.4 bits (75), Expect = 0.87
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 292 KDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELK 351
K+E+ LR EK +++ EL L+K++ Q E NL + L+ EE
Sbjct: 63 KEEIHKLRNEFEKE---------LRERRNELQKLEKRLLQKEE-NLDRKLELLEKREE-- 110
Query: 352 KNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDS 411
+++ +K++ + + ++ + ++ E + E+++ L E+ K I+
Sbjct: 111 -------ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL---- 159
Query: 412 LKETNEELK 420
L++ EE +
Sbjct: 160 LEKVEEEAR 168
Score = 30.9 bits (71), Expect = 2.8
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 306 EKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKK 365
E+ + I+E KK+AE + K+ LE+K + + E+EL++ +
Sbjct: 38 EEAKRILEEAKKEAEAI----KKEALLEAKE-EIHKLRNEFEKELRE----------RRN 82
Query: 366 QMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQ 425
++ +L + ++ + D+ +K +E++ ++E E+ E + +E EEL QLQ
Sbjct: 83 ELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Query: 426 Q 426
+
Sbjct: 143 E 143
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 35.3 bits (81), Expect = 0.12
Identities = 66/367 (17%), Positives = 146/367 (39%), Gaps = 32/367 (8%)
Query: 229 VEPTNKGNSSMRRQMDALKEELFKAESARDDY-RIKLEIQSKQMEDLELKLNSLEETAGE 287
V + + + + + + ++ +++ E+ K++E ++ + +
Sbjct: 39 VSTSALSSLQKQVEESMTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTL 98
Query: 288 ARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVK----------------Q 331
A + E+D E +++ E + + + +A E + K +K Q
Sbjct: 99 AENYERELDRNLELEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQ 158
Query: 332 LESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKL 391
L+ S + DL E + N +++ + + ++ EL Q E K ++E
Sbjct: 159 LKEAKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAE------ 212
Query: 392 QEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITEL 451
+K+ SL E+ +K EEL + +Q + + L + E + L
Sbjct: 213 -KKLQSLTSEQASSADNSVKIKHLEEEL--KRYEQDAEVVKSMKEQLLQIPELERELAAL 269
Query: 452 RQKLVRLT--HENNMLQMNQKDDIEGKLNIVNAKLDD-VTQQVKMKTLENRKANQRILEL 508
R++ +L E+N L + +D++ +L + +++ + LEN + + L
Sbjct: 270 REENRKLRSMKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKSLLQ 329
Query: 509 EAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSE 568
+ L R +D + +I LQNE LKE+ + +++LQ + SE
Sbjct: 330 DIGLNLRTPDD---LSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSE 386
Query: 569 IQDYEEK 575
I + ++K
Sbjct: 387 ILELKKK 393
Score = 29.5 bits (66), Expect = 8.3
Identities = 69/342 (20%), Positives = 139/342 (40%), Gaps = 51/342 (14%)
Query: 237 SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVD 296
S M+ + EL ES ++ R +LE K++ + E KL SL + ++
Sbjct: 174 SEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIK 233
Query: 297 ILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNW 356
L E ++ E+ ++++ K++ ++ +L++++ L +N D E
Sbjct: 234 HLEEELKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNE--------- 284
Query: 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN 416
L + + R ++ E K++EK+ L+ EKEKL E S K
Sbjct: 285 ------------LLKEELEDLQSRLERFE----KMREKLADLELEKEKLENELKSWKSL- 327
Query: 417 EELKCCQLQQSKSAELNTLGENLDLSED-SVPITELRQKLVRLTHENNMLQMNQKDDIEG 475
L +G NL +D S I L+ + ++L +N + + K
Sbjct: 328 ---------------LQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAK----- 367
Query: 476 KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKER---VTEDAAGMKVKIFELQN 532
+L +L Q+ + LE +K + + L L+ R VT++ G++ +
Sbjct: 368 QLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAILNSYDK 427
Query: 533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEE 574
E+ + E L++K+Q + + ++++ + EE
Sbjct: 428 ELTETSVS-GQLMKRLEEAEDLVQKVQSHLAKMENQLSELEE 468
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 34.3 bits (79), Expect = 0.14
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQME 272
+++ M ++E +A+ + D ++K ++Q KQME
Sbjct: 77 LQKMMKEFQKEFREAQESGDMKKLK-KLQEKQME 109
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 34.9 bits (80), Expect = 0.15
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 281 LEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYI 340
LE E R + E D ++ K+E I Y+ EL +LKK+ ++L +
Sbjct: 31 LERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELE 90
Query: 341 QQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQR 400
++ DL+ EL + K Q++ + Q YN F+ + + ++ +LQ + + Q
Sbjct: 91 KEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLED-NLQSLELQYEYSLNQL 149
Query: 401 EK 402
+K
Sbjct: 150 DK 151
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 34.5 bits (80), Expect = 0.19
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 25/98 (25%)
Query: 238 SMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDI 297
++ ++ L+EEL + E +++E ++ L L + A
Sbjct: 331 ELKEELKELEEELKELE--------------EELEKIKKLLKKLPKKARG---------- 366
Query: 298 LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESK 335
+ EK E+ E ++ET +K +EEL +L++++K+L+ +
Sbjct: 367 -QLPPEKREQLEKLLETKEKLSEELEELEEELKELKEE 403
Score = 32.2 bits (74), Expect = 1.0
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKAN 584
V EL+ E+K L+E++ +EE + KL++KL + + R+ +EK
Sbjct: 327 VDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQL------PPEKREQLEKL- 379
Query: 585 SAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIAT 636
+ +L ++ +++ L +L++ LE + K+
Sbjct: 380 ------------LETKEKLSEELEELEEE---LKELKEELESLYSEGKISVN 416
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 34.2 bits (78), Expect = 0.21
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 6/166 (3%)
Query: 147 QQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSML 206
++ + Q + L Q Q+L L+T+ + R Q+ + L L
Sbjct: 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177
Query: 207 QEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEI 266
Q + L + L+ R + +E + ++ A EEL + +A ++
Sbjct: 178 QASATQLKSQVLDLKLRSAQ--IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQ 235
Query: 267 QSKQMEDLEL----KLNSLEETAGEARYLKDEVDILRETAEKVEKY 308
+ Q+ + + E + + L+ L + ++E Y
Sbjct: 236 RDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281
Score = 31.5 bits (71), Expect = 1.6
Identities = 31/196 (15%), Positives = 70/196 (35%), Gaps = 9/196 (4%)
Query: 388 NKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKS-AELNTLGENLDLSEDSV 446
N+ L+ V L + +L R L E + + ++ + +EL + + +
Sbjct: 66 NRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125
Query: 447 P-----ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVK--MKTLENR 499
+ + +Q+L RLT + LQ K E + + A+ + K +
Sbjct: 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL-EAQAQSLQASQKQLQASATQL 184
Query: 500 KANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQ 559
K+ L+L + E+ ++ A E+ + ++ I +
Sbjct: 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKA 244
Query: 560 DSITQKDSEIQDYEEK 575
I + +I++ E +
Sbjct: 245 QQIAARAEQIRERERQ 260
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 34.6 bits (80), Expect = 0.22
Identities = 61/378 (16%), Positives = 126/378 (33%), Gaps = 58/378 (15%)
Query: 143 EESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMEL--- 199
+ ++Q + I+++ L + + NM L + + + +D + ++L
Sbjct: 937 DGVLEQWEEEGIEKVFKLKSTISTTNMVLFDE-NGKIKKYSDALDILKEFYLVRLDLYKK 995
Query: 200 --DMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESAR 257
+ + L+ E + L K R + + TN + L +EL K R
Sbjct: 996 RKEYLLGKLERELARL-SNKVRFIKHVINGELVITN-------AKKKDLVKELKKLGYVR 1047
Query: 258 -DDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVD--------ILRETAEKVEKY 308
D K + E+ + + + + L V I T EKVEK
Sbjct: 1048 FKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKL 1107
Query: 309 EGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMS 368
+E +K+ E+L K + W +D +++ +
Sbjct: 1108 NAELEKKEKELEKL--KNTTPKDM-----------------------WLEDLDKFEEALE 1142
Query: 369 ELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSK 428
E EE + A + ++K K + L++ K K ++ ++ K + SK
Sbjct: 1143 EQEEV--EEKEIAKEQRLKSKTKG-KASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSK 1199
Query: 429 SAELNTLGE-------NLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVN 481
+ + + S S + QK L+ + + + +
Sbjct: 1200 RVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDE 1259
Query: 482 AKLDDVTQQVKMKTLENR 499
DD++++ K K R
Sbjct: 1260 FSSDDLSKEGKPKNAPKR 1277
Score = 33.5 bits (77), Expect = 0.47
Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 24/202 (11%)
Query: 473 IEGKLNIVNAKLDDVTQQVKMKTL-----ENRKANQRILELEAELKERVTEDAAG----- 522
I G+L I NAK D+ +++K +K +++I E E E E
Sbjct: 1022 INGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEE 1081
Query: 523 ----------MKVKIFELQNE-IKNLKEQINHQQEEH--LEQGKLIEKLQDSITQKDSEI 569
+ + I+ L E ++ L ++ +++E L+ + + + + + +
Sbjct: 1082 LGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEAL 1141
Query: 570 QDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQ 629
++ EE K I K K + +LK KK + ++
Sbjct: 1142 EEQEEVEEKEIAKEQR-LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Query: 630 QEKLIATAFYNLALQKQRQTAD 651
+ + K+ ++
Sbjct: 1201 VDSDEKRKLDDKPDNKKSNSSG 1222
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 33.8 bits (78), Expect = 0.22
Identities = 24/141 (17%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 265 EIQSKQMEDLELKLN-SLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELV 323
E + + +E L+ L +LE + L +++++ K+ K ++ EE+
Sbjct: 139 EWRMQLLEGLKEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALK------EEIA 192
Query: 324 DLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADK 383
L++ +L + +++ +EL+ ++ +KQ+ EL + E T +
Sbjct: 193 SLRQLADELNLCDPLELEK---ARQELRSL---SVKISEKRKQLEELQQELQELTIAIEA 246
Query: 384 SEFENKKLQEKVTSLQREKEK 404
+ +L E++ ++ +E+
Sbjct: 247 LTNKKSELLEEIAEAEKIREE 267
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 34.1 bits (79), Expect = 0.27
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 25/145 (17%)
Query: 281 LEETAGEARYLKDEVDILRETAEKVEKYEGIIET-YKKKAEELVDLKKQVKQ----LESK 335
+EE EA LK E L E E+V K +E K++ EL L++++ Q L+ K
Sbjct: 38 IEEAKKEAETLKKE--ALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRK 95
Query: 336 NLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKV 395
S ++ +LE++ K+ N + +D ++++ EL + EE E++
Sbjct: 96 MESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL--------------ERI 141
Query: 396 TSLQREKEKLIVERDSLKETNEELK 420
+ L +E+ K I+ L+E EE +
Sbjct: 142 SGLTQEEAKEIL----LEEVEEEAR 162
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 33.8 bits (78), Expect = 0.32
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 281 LEETAGEA--RYLKDEVDILRETAE--KVEKYEGIIETYKKKAEELVDLKKQVKQLESK 335
+E AGEA Y+++ D+LRE+++ KV E + ET K+ EE + +K++++L+ K
Sbjct: 730 IEFAAGEAALEYIQELEDLLRESSDILKVPP-EQLPETVKRFFEEWKEQRKEIERLKKK 787
>gnl|CDD|227612 COG5293, COG5293, Predicted ATPase [General function prediction
only].
Length = 591
Score = 33.3 bits (76), Expect = 0.45
Identities = 45/277 (16%), Positives = 99/277 (35%), Gaps = 46/277 (16%)
Query: 125 CAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQT 184
CA K + +L E +++ + S+ LE + + + + Q+ V + Q
Sbjct: 194 CAAEYYDKIQELESKKKLAELLRKTWIGSLDSLEEI--------ETTELRKQDEVNKKQA 245
Query: 185 VIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMD 244
++ D AQ E + V+ + E + L RR+ + V+ +S++ Q+
Sbjct: 246 TLNTFDFHAQDYAETEELVNTVDERIAEL--NNRRISMQSHWKRVK------TSLKEQIL 297
Query: 245 ALKEELFKAESARDDYRIKLEIQSKQ-MEDLELKLNSLEETAGEARYLKDEVDILRETAE 303
+E + ++ + Q K+ E + ++ E + YL++E+ + +
Sbjct: 298 FCPDE---IQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHD--YLQEEIAEIEGDLK 352
Query: 304 KV------------------------EKYEGIIETYKKKAEELVDLKKQVKQLESKNLSY 339
+V EKY+ + E EL +L+ +++ L +
Sbjct: 353 EVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALD 412
Query: 340 IQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNE 376
E L ++V + + F E
Sbjct: 413 QYIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFKE 449
Score = 29.5 bits (66), Expect = 6.8
Identities = 49/272 (18%), Positives = 98/272 (36%), Gaps = 31/272 (11%)
Query: 312 IETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELY 371
Y K +EL KK + L + +LD EE++ + + +
Sbjct: 195 AAEYYDKIQELESKKKLAELLRKTWIG----SLDSLEEIETT---ELRKQDEVNKKQATL 247
Query: 372 NQFNEETKRADKSEFENKKLQEKVTSLQREK--EKLIVERDSLKETNEELKCCQLQQSKS 429
N F+ + ++E + E++ L + + +R + L C Q
Sbjct: 248 NTFDFHAQDYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLY 307
Query: 430 AELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKD-------DIEGKLNIVNA 482
E+ L ++++ + N + + D +IEG L VNA
Sbjct: 308 EEVGVLFPG-----------QVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNA 356
Query: 483 KLDDVTQQVK--MKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQ 540
+LDD+ ++ + L+NR ++ L E+ E A ++ +I L+ ++ L +
Sbjct: 357 ELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGE-LAELEYRIEPLR-KLHALDQY 414
Query: 541 INHQQEEHLEQGKLIEKLQDSITQKDSEIQDY 572
I + E L+ + I + I
Sbjct: 415 IGTLKHECLDLEERIYTEVQQQCSLFASIGRL 446
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 33.3 bits (77), Expect = 0.50
Identities = 77/386 (19%), Positives = 155/386 (40%), Gaps = 55/386 (14%)
Query: 265 EIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVD 324
+I + + D+E L EE + R+LK ++E E ++ E E ++ EEL +
Sbjct: 71 DIVTNSLPDIEELLFEAEELNDKFRFLK-AKKAIKEIEELLDTIE---EDIEQILEELNE 126
Query: 325 LKKQVKQLESKNLSYIQQTLDLEEELKKN--------GNWKSQVDMYKKQMSELYNQFNE 376
LK+ E KN +++ D EL+K G +++ ++ E + QF E
Sbjct: 127 LKES----EEKNRKEVEELKDKYRELRKTLLAKSFSYGPALDELEKQLDELEEEFEQFVE 182
Query: 377 ETKRADKSEFEN--KKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNT 434
T+ D E KL+E+ +L+++ E++ LKE E QL++ K+
Sbjct: 183 LTESGDYLEAREVLLKLEEETDALEQKMEEI---PPLLKELQNEFP-DQLEELKAGYREM 238
Query: 435 LGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMK 494
E + L + N + LD+ +
Sbjct: 239 TEEGYHFDHLDI--------EKELQDLKEQIDQNLA-------LLEELDLDEAEE----- 278
Query: 495 TLENRKANQRI------LELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEH 548
EN + +RI LE E + K+ V ++ + + + + K L +++ Q+ +
Sbjct: 279 --ENEEIEERIDTLYDILEKEVKAKKFVEKNIDKLTDFLEHAREQNKQLLLELDRLQQSY 336
Query: 549 LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRK 608
+E +++ Q + Y++ + I + A+ L ++ +L+ + K
Sbjct: 337 TLNEDELETVRELEKQLEELEAQYDQ-LVERIAEKKVAYSELQEELE--EIEKQLEEIEK 393
Query: 609 KNDDKDKMLDDLEKTLEKKEQQEKLI 634
+ ++ + L L K ++ E +EKL
Sbjct: 394 EQEELSESLQGLRK--DELEAREKLQ 417
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 33.0 bits (75), Expect = 0.53
Identities = 53/296 (17%), Positives = 112/296 (37%), Gaps = 23/296 (7%)
Query: 291 LKDEVDILRETAEKVEKYEGIIETYKKKAEELVD----LKKQVKQLESKNLSYIQQTLDL 346
LK + D L E ++ K I+T ++K L + V ++ K+ + + L
Sbjct: 276 LKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKL 335
Query: 347 EEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLI 406
+ E++ + ++ + + EL+ Q + +FE QE+ L RE +K+
Sbjct: 336 KSEIELK---EEEIKALQSNIDELHKQL--RKQGISTEQFE-LMNQERE-KLTRELDKIN 388
Query: 407 VERDSLKETNEELKCCQLQQSKSAE-----LNTLGENLDLSEDSVPITELRQKLVRLTHE 461
++ D L ++ + K KS E ++L +N+ S + L +
Sbjct: 389 IQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQ 448
Query: 462 NNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERV--TED 519
+ I+ + +N ++ + + + K++ + + + EL + + E
Sbjct: 449 LFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLEL 508
Query: 520 AAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
FEL E + +E KL ++L D + I D E+
Sbjct: 509 ELSEANSKFELSKEENE-----RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQL 559
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 32.7 bits (75), Expect = 0.55
Identities = 60/296 (20%), Positives = 130/296 (43%), Gaps = 21/296 (7%)
Query: 175 VQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNK 234
+ L + + + + +++ ++ EL + S L E++ L + R L E+ QE
Sbjct: 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQE-------- 59
Query: 235 GNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDE 294
+R + D + EE+ + + RD+ KL+ K+ +L+ K N + L+ E
Sbjct: 60 ----LREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLERE 115
Query: 295 VDILRETAE----KVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEEL 350
++ L + + E+ +++ K+ +EL D KK +++ E + ++E
Sbjct: 116 IERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAE----IDELK 171
Query: 351 KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD 410
KK ++ + E + + + + AD+ E +L E+ L ++ ++L E
Sbjct: 172 KKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFR 231
Query: 411 SLKETNEEL-KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNML 465
+L+ EL K + ++K + +L E + I E ++ +LT E +L
Sbjct: 232 NLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEKLTTEELLL 287
Score = 31.2 bits (71), Expect = 1.8
Identities = 48/244 (19%), Positives = 112/244 (45%), Gaps = 6/244 (2%)
Query: 345 DLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK 404
L+E K K +++ K++ EL + +E ++ D+ + ++L+EK L+ E+++
Sbjct: 7 KLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDE 66
Query: 405 LIVERDSLKETNEEL-KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENN 463
+ E LKE +E+ Q + + EL +L S+ E + + + +
Sbjct: 67 INEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTS 126
Query: 464 MLQMNQKDDIEGKLNIVNAKLDDVTQQ--VKMKTLENRKANQRILELEAELKERVTE--- 518
+L ++ ++ K+ + +L+D + K E + + + E+ E++ E
Sbjct: 127 VLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELAN 186
Query: 519 DAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRK 578
+A ++ +L E L+++ + EE +E K I++L + +E+++ E+K +
Sbjct: 187 EAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA 246
Query: 579 YIEK 582
K
Sbjct: 247 LRAK 250
>gnl|CDD|234217 TIGR03458, YgfH_subfam, succinate CoA transferase. This family of
CoA transferases includes enzymes catalyzing at least
two related but distinct activities. The E. coli YgfH
protein has been characterized as a
propionyl-CoA:succinate CoA transferase where it appears
to be involved in a pathway for the decarboxylation of
succinate to propionate. The Clostridium kluyveri CAT1
protein has been characterized as a acetyl-CoA:succinate
CoA transferase and is believed to be involved in
anaerobic succinate degradation. The
propionate:succinate transferase activity has been
reported in the propionic acid fermentation of
propionibacterium species where it is distinct from the
coupled activities of distinct nucleotide-triphosphate
dependent succinate and propionate/acetate CoA
transferases (as inferred from activity in the absence
of NTPs). The family represented by this model includes
a member from Propionibacterium acnes KPA171202 which is
likely to be responsible for this activity. A closely
related clade not included in this family are the Ach1p
proteins of fungi which are acetyl-CoA hydrolases. This
name has been applied to many of the proteins modeled by
This model, possibly erroneously.
Length = 485
Score = 33.0 bits (76), Expect = 0.57
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 27/104 (25%)
Query: 62 TDIGANNWRLKI---SNL-KKINEGIVDYFQEYFDQALGE---------FGKVDVHKIVE 108
+ A RL L KKIN G V Y D L GKVDV ++E
Sbjct: 69 AEADAIARRLPYQSDPTLRKKINAGEV----MYVDMHLSHVAQQLRYGFLGKVDV-AVIE 123
Query: 109 NIDAKELARLMQLILGCAIN---CNRKQNYITKI-----MELEE 144
E R++ N I ++ +ELE
Sbjct: 124 AAAITEDGRII-PTSSVGNNPTFLELADKVIVEVNTWQPLELEG 166
>gnl|CDD|217073 pfam02504, FA_synthesis, Fatty acid synthesis protein. The plsX
gene is part of the bacterial fab gene cluster which
encodes several key fatty acid biosynthetic enzymes. The
exact function of the plsX protein in fatty acid
synthesis is unknown.
Length = 322
Score = 32.3 bits (74), Expect = 0.68
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 214 VEEKRRLEERFQENFVEPTN-------KGNSSMRRQMDALKE-ELFKAESA 256
E +L E +E + K SSM +D +KE E A SA
Sbjct: 49 AELNSKLTIVHAEGVIEMEDTPLAAIRKKKSSMAVAIDLVKEGEADAAVSA 99
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 32.9 bits (75), Expect = 0.72
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 524 KVKIFELQNEIKNLKEQINHQQEEHLEQGKL-----IEKLQDSITQKDSE------IQDY 572
K + EL+ E++ LKEQI +E + +L IEKL+ I + +E +Q+
Sbjct: 428 KTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQER 487
Query: 573 EEKNRKYIEKANSAFKLLDPTV-QNVAALNELKNLR----------KKNDDKDKMLDDLE 621
E R+ KANS +L+ P + + + L + N R K D +
Sbjct: 488 LENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAK 547
Query: 622 KTLEKKEQQEKL 633
EKK + EKL
Sbjct: 548 ALSEKKSKAEKL 559
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 32.3 bits (74), Expect = 0.76
Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 476 KLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIK 535
+ V + + K E RKA ++I L ER T++ EI
Sbjct: 68 EAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDS-------GEEIA 120
Query: 536 NLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKL 589
+ E E L Q + + E R +E K
Sbjct: 121 EMMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLNLINELLRAGLELEILDMKD 174
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 32.2 bits (74), Expect = 0.84
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 23/117 (19%)
Query: 292 KDEVDILRE----TAEK-------VEKYEGIIETYKKKAEELV---DLKKQVKQLESKNL 337
+DE+DI E T E+ ++ YE +++TY KAE ++ + K+ + +L+ K
Sbjct: 193 RDELDIFYELMKKTEERKGFHDRSLDYYEKLLDTYGDKAEFMLAYLNFKEYLDELQEKLE 252
Query: 338 SYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEK 394
+ LEE+L+KN N K K +++EL Q KR D E K+L K
Sbjct: 253 KLEKDLAKLEEKLEKNPNSK-----KKNKLAELEQQLASLEKRID----EAKELIAK 300
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 32.9 bits (75), Expect = 0.86
Identities = 50/288 (17%), Positives = 111/288 (38%), Gaps = 14/288 (4%)
Query: 277 KLNSLEETAGEARYLKDEVDILRETAEKVEKYEGI---IETYKKKAEELVDLKKQVKQLE 333
L SL+E + + E DI + KY + IE YK++ E+L K Q+ +
Sbjct: 699 NLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRK 758
Query: 334 SKNLSYIQQTLDLEEELKKNGN----WKSQVDMYKKQMSELYNQFNEETKRA-DKSEFEN 388
++ + ++ + + K +K + + ++S N E K D N
Sbjct: 759 NEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLLNSYN 818
Query: 389 KKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPI 448
+Q+ ++ E+L +E L +L++ + + + E+
Sbjct: 819 ILIQKLEAHTEKNDEELKQLLQKFPTEDENLNLKELEKEFNENNQIVDNIIKDIENMNKN 878
Query: 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILEL 508
+ + L + +N + + + K+++ N KL+ + + + + +L
Sbjct: 879 INIIKTLNIAINRSNSNKQLVEHLLNNKIDLKN-KLEQHMKIINTDNIIQKNEKLNLLNN 937
Query: 509 EAELKERVTEDAA-----GMKVKIFELQNEIKNLKEQINHQQEEHLEQ 551
+ KE++ + + +K++I + KE IN HLE+
Sbjct: 938 LNKEKEKIEKQLSDTKINNLKMQIEKTLEYYDKSKENINGNDGTHLEK 985
Score = 30.6 bits (69), Expect = 3.9
Identities = 44/270 (16%), Positives = 99/270 (36%), Gaps = 28/270 (10%)
Query: 348 EELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIV 407
E KK+ +++ YKK + ++ ++E + FE +K T+ E+L
Sbjct: 1180 NEAKKSKTIMEEIESYKKDIDQVKKNMSKER-NDHLTTFEYNAYYDKATASYENIEELTT 1238
Query: 408 ERDSLKET-NEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQ 466
E LK N +L++ K + L + + + + L + + L
Sbjct: 1239 EAKGLKGEANRSTNVDELKEIKLQVFSYLQQVIKENNK------MENALHEIKNMYEFLI 1292
Query: 467 MNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVK 526
+ I ++ K ++ + K LE L ++ ++ K
Sbjct: 1293 SIDSEKILKEILNSTKKAEEFSNDAKK-----------ELEKTDNLIKQ-------VEAK 1334
Query: 527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSA 586
I + + + + +Q + ++ K IE++++ I+ K EI Y + EK +
Sbjct: 1335 IEQAKEHKNKIYGSLEDKQID--DEIKKIEQIKEEISNKRKEINKYLSNIKSNKEKCDLH 1392
Query: 587 FKLLDPTVQNVAALNELKNLRKKNDDKDKM 616
+ + LN+ + + N + +
Sbjct: 1393 VRNASRGKDKIDFLNKHEAIEPSNSKEVNI 1422
Score = 30.2 bits (68), Expect = 4.8
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 549 LEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRK 608
E+ + ++ L++S Q+ +E + K K E NS LLD ++V L +N++K
Sbjct: 1986 KEEYEELKDLRNSFNQEKAETLN-NLKLNKIKEDFNSYKNLLDELEKSVKTLKASENIKK 2044
Query: 609 KNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASI 657
++K +D + +E E++ + I + L L+K + +R SI
Sbjct: 2045 IVENKKTSIDAINTNIEDIEKEIESINPSLDEL-LKKGHKIEISRYTSI 2092
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 32.6 bits (74), Expect = 0.92
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 39/227 (17%)
Query: 112 AKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSL 171
A++LA L L+ A+ +I K ++ E+ ++ Q+ L + + L
Sbjct: 1690 AEQLANLKNLLRLVAM-----PAHIAKAIDKAETANDIVTQAALLLTKVEETKE-----L 1739
Query: 172 DPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEP 231
D Q + ++VID+ D + ++ +++ E LV + RL E
Sbjct: 1740 DTQTVEWLKHAESVIDSHDLTVR--IDESGPMTIYAERIDALVRLENRLAE--------- 1788
Query: 232 TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYL 291
LK EL AE A DD +++ ++ E+A A+
Sbjct: 1789 --------------LKSELALAEVAWDDTWSTFIHDKDRIDKSSEGFSAARESAARAKVS 1834
Query: 292 KDEVDILRETAEKVE---KYEGIIET-YKKKAEELVDLKKQVKQLES 334
+ ++ LR AE K G+I++ Y+ + L +K++E
Sbjct: 1835 TNAINALRNNAEYNRLPAKIIGLIDSKYRDRTVVLDAFLDSMKEIED 1881
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 32.4 bits (74), Expect = 0.92
Identities = 27/145 (18%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 504 RILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINH-QQEEHLEQGKL--IEKLQD 560
+I +L +EL++++ ++ ++ K+ + ++E++ L++ +Q+ L L IE+
Sbjct: 279 KIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLK 338
Query: 561 SITQKD----SEIQDYEEKNRKYIEKANSAFKL----------LDPTVQNVAALNELKNL 606
S+ D EI+ +K++ E A FK LD + +
Sbjct: 339 SVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYES 398
Query: 607 RKKNDDKDKMLDDLEKTLEKKEQQE 631
K +K + +E+ E+ ++
Sbjct: 399 AKTALEKAEGKKAIEEIREELIEEG 423
Score = 30.4 bits (69), Expect = 3.7
Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 10/153 (6%)
Query: 272 EDLELKLNSLEETAGEARYLKDEVDILRETAEKVEK----YEGIIETYKKKAEELVDLKK 327
++ + + + + L+ E+ L EK E E E ++K E L +
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQ 331
Query: 328 QVKQLESKNLSYIQQTLD-LEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEF 386
+++ + ++ EL K+ Y K+ Y + D+
Sbjct: 332 LIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKK----YKKLKGAKVNLDRQLS 387
Query: 387 ENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
E K+ S + EK + +++E EEL
Sbjct: 388 ELKEAIAYYESAKTALEK-AEGKKAIEEIREEL 419
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 32.1 bits (74), Expect = 0.93
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 313 ETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYK 364
E + E +L++Q++QLE K + LE EL++ KS+++ K
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELER---LKSELEKLK 49
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 32.4 bits (75), Expect = 0.93
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 289 RYLKDEVDILRETAE--KVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDL 346
YL ++ +L+E A K + E + E + EEL +L+K+++QL++K + DL
Sbjct: 694 EYLNEQEALLKELAALLKAKPSE-LPERVEALLEELKELEKELEQLKAKLAA--AAAGDL 750
Query: 347 EEELKKNGNWK 357
+ K+ K
Sbjct: 751 LAQAKEVNGVK 761
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 427
Score = 32.1 bits (74), Expect = 1.1
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Query: 423 QLQQSKSAELNTLGEN----LDLSEDSVPI----TELRQKLVRLTHENNMLQMNQKDDIE 474
+LQ S S L + L+L E I E R ++ + E + ++ ++ I
Sbjct: 284 KLQSSFSTNNLVLFDGGPKYLNLKE----ILKEFLEHRLEVYKRRKEYLLEKLEERLHIL 339
Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKV------KIF 528
L K+D V + ++ +++ +KA + EL EL E + M++ +I
Sbjct: 340 EGLLKALNKIDFVIEVIR-GSIDLKKAKK---ELIEELSEIQADYLLDMRLRRLTKEEIE 395
Query: 529 ELQNEIKNLKEQINH 543
+L+ EI+ L+++I
Sbjct: 396 KLEKEIEELEKEIAE 410
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 32.3 bits (73), Expect = 1.2
Identities = 68/402 (16%), Positives = 154/402 (38%), Gaps = 26/402 (6%)
Query: 191 QMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN--SSMRRQMDALKE 248
+ +R E+ Q +E L + Q+ + N + +
Sbjct: 720 KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMP 779
Query: 249 ELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKY 308
E A+ D I Q +++D+E K+ + + + +E EK +
Sbjct: 780 EEESAKVCLTDVTIMERFQ-MELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHEL 838
Query: 309 EGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMS 368
+ ++ + + + D ++Q++ L+SK + L + L++ ++ Q+ ++
Sbjct: 839 DTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898
Query: 369 ELYNQFNEETKRADKSE-FENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQS 427
L + + ++ E F K QEK + ++ +D + + E++K +
Sbjct: 899 SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK--NIHGY 956
Query: 428 KSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK--DDIEGKLNIVNAKLD 485
N + + D L+QK L N L+ +K + I + ++ +D
Sbjct: 957 MKDIENKIQDGKD--------DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDID 1008
Query: 486 DVTQQVKM--KTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINH 543
Q + L RK + E+E ELK ++++ +++ E + L+E I+
Sbjct: 1009 TQKIQERWLQDNLTLRKRENELKEVEEELK---QHLKEMGQMQVLQMKQEHQKLEENIDL 1065
Query: 544 QQEEHL-----EQGKLIEKLQDSITQKDSEIQDYEEKNRKYI 580
+ H+ ++G E ++ + +D EEK R+ +
Sbjct: 1066 IKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMM 1107
>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein.
Length = 326
Score = 31.4 bits (71), Expect = 1.4
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 15/135 (11%)
Query: 155 QELENLHGSTHSLNMSLD---PQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKS 211
+ L NL +T SL+ S+ ++ +L A+LQ + + D L V LQ
Sbjct: 35 ERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQALQTSVD 94
Query: 212 CLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQM 271
L E L V + S ++ + A ++ +S+ + +
Sbjct: 95 SLSSELADL-----SLTVSAHDAAISDLQTTVHANSTDISNLKSS-------VSANGLNI 142
Query: 272 EDLELKLNSLEETAG 286
DLE ++ SLE +
Sbjct: 143 TDLEQRVKSLESGSS 157
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 31.4 bits (71), Expect = 1.8
Identities = 57/334 (17%), Positives = 125/334 (37%), Gaps = 51/334 (15%)
Query: 101 VDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESV---QQVIMQSIQEL 157
+ E I A + + G ++ + ++ + I E+++ Q +Q++++L
Sbjct: 99 RASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDL 158
Query: 158 -------ENLHGSTHSLNMSLDPQVQNLVAELQTVIDA----------RDQMAQRCMELD 200
E L G + L M L + Q I R+++ R
Sbjct: 159 EKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEG 218
Query: 201 MQVSMLQEEKSCLVEEKRRLE---ERFQENFVEPTNKGNSSM-----RRQMDA-LKEELF 251
+ V L +E L EE L+ + + +E R +DA L+E
Sbjct: 219 LCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELES 278
Query: 252 KAESARDDYR----IKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEK 307
K A++D ++ + +++E+L+ L+ +A + D+ LR+ +K+E
Sbjct: 279 KFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEA 338
Query: 308 YEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQM 367
K + ++ L++++K LE + + + S + +Y++ +
Sbjct: 339 SLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIH-------------SYIQLYQESI 385
Query: 368 SELYNQFNEETKRADKSEFENKKLQEKVTSLQRE 401
E ++T K E + + L+ + E
Sbjct: 386 KEF-----QDTLSKLKEESKKRSLEHPADDMPSE 414
Score = 30.6 bits (69), Expect = 3.9
Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 43/192 (22%)
Query: 467 MNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILE-----LEAELKERVTEDAA 521
+ +K+ ++GK+NI+ +L + ++K+ E K + ILE L EL R +
Sbjct: 162 LTEKEALQGKINILEMRLSETDARIKLAAQE--KIHVEILEEQLEKLRNELLIRGATEGL 219
Query: 522 GMKVKIFE----------LQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQD 571
+ E L+++I+ LK ++ E + + KL+ + D+ +++
Sbjct: 220 CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVA----ETEERVFKLEKERSLLDASLRE 275
Query: 572 YEEK------------NRKY---IEKANSAFKLLDPTVQNV--AALNELKNLRKKNDDKD 614
E K +Y EK + LLD V AAL + +N D
Sbjct: 276 LESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAAL-----VLDQNQDLR 330
Query: 615 KMLDDLEKTLEK 626
+D LE +L++
Sbjct: 331 DKVDKLEASLKE 342
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 30.5 bits (69), Expect = 2.0
Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
Query: 421 CCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQM------NQKDDIE 474
+ +LSE ++EL+++L L L+ +
Sbjct: 61 LLKAPVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLR 120
Query: 475 GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEI 534
L + +L+ + + +K E R+ Q + E EL+E + ++ + E E+
Sbjct: 121 ELLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQR-LQEAIQEL 179
Query: 535 KNLKEQI 541
++L EQ+
Sbjct: 180 QSLLEQL 186
Score = 29.0 bits (65), Expect = 5.4
Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKAN 584
++ EL+ ++ L+E++ +E E +E L++ + ++ EE+ +E
Sbjct: 79 GELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEER----LESLE 134
Query: 585 SAFKLLDPTVQNVAALNELKNLRKKNDDKDKML-DDLEKTLEKKEQQEKLIA 635
+ K L EL+ LR+ ++ + L ++LE+ E ++ ++ I
Sbjct: 135 ESIKELAK---------ELRELRQDLREEVEELREELERLQENLQRLQEAIQ 177
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 31.0 bits (71), Expect = 2.2
Identities = 84/382 (21%), Positives = 171/382 (44%), Gaps = 47/382 (12%)
Query: 265 EIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVD 324
EI + + D+E +L EE + R+ K + + E ++ E E ++ EEL +
Sbjct: 75 EIVTNSLPDIEEQLFEAEELNDKFRFRKAK-HEINEIESLLDLIE---EDIEQILEELQE 130
Query: 325 LKKQVKQLESKNLSYIQQTLDLEEELKKN--------GNWKSQVDMYKKQMSELYNQFNE 376
L + E KN ++Q DL EL+K+ G +++ + + E ++QF E
Sbjct: 131 LLES----EEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVE 186
Query: 377 ETKRADKSEFEN--KKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNT 434
T+ D E +L+E++ +L++ E++ + LKE EL QLQ+ K+
Sbjct: 187 LTESGDYVEAREILDQLEEELAALEQIMEEI---PELLKELQTELPD-QLQELKAGYREL 242
Query: 435 LGENLDLSEDSVP--ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVK 492
+ E L + I +L++++ +L+ D+ E K + ++D +
Sbjct: 243 VEEGYHLDHLDIEKEIQDLKEQIDEN---LALLEELDLDEAEEKNEEIQERIDQLYD--- 296
Query: 493 MKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQG 552
ILE E + ++ V +++ + + + + K LKE+I+ ++ +
Sbjct: 297 ------------ILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNE 344
Query: 553 KLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDD 612
+E ++ Q +S + Y+E + I + A+ L ++ L +L+ + K+ +
Sbjct: 345 SELESVRQLEKQLESLEKQYDE-ITERIAEQEIAYSELQEELE--EILKQLEEIEKEQEK 401
Query: 613 KDKMLDDLEKTLEKKEQQEKLI 634
+ML L K ++ E +EKL
Sbjct: 402 LSEMLQGLRK--DELEAREKLE 421
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 31.2 bits (71), Expect = 2.2
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 281 LEETAGEA--RYLKDEVDILRETAEKVEK-YEGIIETYKKKAEELVDLKKQVKQLESKNL 337
+E G A YL ++ D L+E A+ ++ + + ++ EE L+K+++ L+ K
Sbjct: 691 IEAVTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIA 750
Query: 338 SYIQQTLDLEEELKKNGNWK---SQVD-MYKKQMSEL 370
Q+ +L+++ + K VD K + +
Sbjct: 751 D--QKIDELKDKAETINGVKVLVEVVDAKDMKSLKTM 785
Score = 30.0 bits (68), Expect = 5.1
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 29/148 (19%)
Query: 398 LQREKEKLIVERDSLKETNEEL--KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKL 455
L +++KL D LK T EL K + + A L E+L L I EL+ K
Sbjct: 703 LNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKEL-ESLKLKIADQKIDELKDKA 761
Query: 456 VRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQ---RILELEAEL 512
+ + ++ +D + +KT+ +R ++ I L +
Sbjct: 762 ETI----------------NGVKVLVEVVDAKDMK-SLKTMADRLKSKLGSAIYVLASFA 804
Query: 513 KERV------TEDAAGMKVKIFELQNEI 534
+V + D +K EL N+I
Sbjct: 805 NGKVKLVCGVSNDVLNKGIKAGELINQI 832
>gnl|CDD|110537 pfam01540, Lipoprotein_7, Adhesin lipoprotein. This family
consists of the p50 and variable adherence-associated
antigen (Vaa) adhesins from Mycoplasma hominis. M.
hominis is a mycoplasma associated with human urogenital
diseases, pneumonia, and septic arthritis. An adhesin is
a cell surface molecule that mediates adhesion to other
cells or to the surrounding surface or substrate. The
Vaa antigen is a 50-kDa surface lipoprotein that has
four tandem repetitive DNA sequences encoding a periodic
peptide structure, and is highly immunogenic in the
human host. p50 is also a 50-kDa lipoprotein, having
three repeats A,B and C, that may be a tetramer of
191-kDa in its native environment.
Length = 353
Score = 30.8 bits (69), Expect = 2.5
Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 30/301 (9%)
Query: 324 DLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADK 383
D K K + K + ++Q L EELKKN ++ ++ K+++E F E D
Sbjct: 29 DDKLAEKNGKEKADAALKQANALAEELKKNPDYSKILETLNKEIAEATKSFKEAGSYGDY 88
Query: 384 SEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLG-ENLDLS 442
+ KL V + + EK+ ++ + + E + QS EL + E +LS
Sbjct: 89 PAIIS-KLSAAVENAKNEKKA--IDDKNAQIAKELAERNAKIQSNIEELKKINNEAFELS 145
Query: 443 ED-SVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKA 501
+ + I E+ +K D + +L L D ++Q+ T
Sbjct: 146 KTVNKTIAEVEKKF------------KIPKDFKEQLENFADDLLDKSRQIDEFTTVTSTQ 193
Query: 502 NQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDS 561
L KE T GMK + + + KN +IN I K +
Sbjct: 194 EGFTLAELESFKEITTTWFNGMKSEWARVLDAWKNELTEINS-----------IIKGVEE 242
Query: 562 ITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAAL--NELKNLRKKNDDKDKMLDD 619
+ + EI ++ +K I + FK+ D T + A NEL+N + +K +D
Sbjct: 243 LKKLSHEISEFSNSVKKTISELEKKFKIDDKTNKEEAKKFKNELENFADQLLNKSHEIDK 302
Query: 620 L 620
Sbjct: 303 F 303
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 30.8 bits (70), Expect = 2.7
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTN 233
V++ + ++Q ++ D ELD+ V+ LQE L R + ++E P
Sbjct: 563 AVESAMRDVQDSLEQDDDR-----ELDLAVADLQE---ALYGLNREVRAEYKEEDEGPL- 613
Query: 234 KGNSSMRRQMDALKEELFKAESARDDYR 261
++ +LK+ELF DDY
Sbjct: 614 ---QGIKNTFGSLKDELF-----SDDYW 633
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 30.6 bits (69), Expect = 2.8
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 236 NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDL 274
+ M++Q + ++ EL R D + ++E + L
Sbjct: 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116
>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown].
Length = 780
Score = 30.9 bits (70), Expect = 2.8
Identities = 24/195 (12%), Positives = 51/195 (26%), Gaps = 16/195 (8%)
Query: 489 QQVKMKTLENRKANQRILELEAELKERVTE--DAAGMKVKIFELQNEIKNLKEQINHQQE 546
K+ + + + +L E+ + +TE I++L +K + ++
Sbjct: 133 VNEKLNAVAPKITEKAADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKD 192
Query: 547 E-------HLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAA 599
+ + L+ L +S + + N L A
Sbjct: 193 GTDEASNGNKKLSDLLNTLNNSSATFSDGLNALTSGLTTLTDGLNQLDSGLG---TLAAG 249
Query: 600 LNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASITF 659
+ ELK ++ ++ L Q Q A +
Sbjct: 250 IGELKQGAEQLNEGIGEFSSGLSELNSGVQDLAAGVPQLN----QGISALAAGLSLPDSL 305
Query: 660 SQQPQSFLTKQRQAS 674
Q S Q +
Sbjct: 306 GDQFSSLQEALTQIA 320
>gnl|CDD|131231 TIGR02176, pyruv_ox_red, pyruvate:ferredoxin (flavodoxin)
oxidoreductase, homodimeric. This model represents a
single chain form of pyruvate:ferredoxin (or flavodoxin)
oxidoreductase. This enzyme may transfer electrons to
nitrogenase in nitrogen-fixing species. Portions of this
protein are homologous to gamma subunit of the four
subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Length = 1165
Score = 30.9 bits (70), Expect = 2.8
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 19/71 (26%)
Query: 295 VDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNG 354
VD+L+++ EK +Y KK E++V KN+ + Q ++ E+K
Sbjct: 575 VDLLKKSIEK---------SYGKKGEKIVQ----------KNIKAVDQAVESLHEVKVPA 615
Query: 355 NWKSQVDMYKK 365
WK K
Sbjct: 616 EWKDAPAEPKA 626
>gnl|CDD|215751 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).
Length = 269
Score = 30.4 bits (69), Expect = 2.8
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 43 ALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVD 102
++H AP FS W A R + + GI + +GEFG +
Sbjct: 188 SVHFYAPSHFSGTWFGCEDKTNLAQRLRAAANYAL--DNGIPVF--------IGEFGGGN 237
Query: 103 VHKIVENIDAKELARLMQLILGCA 126
+ K L L + +
Sbjct: 238 ADGPCRDEAEKWLDYLKENGISWT 261
>gnl|CDD|220555 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
(DUF2317). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 541
Score = 30.6 bits (70), Expect = 2.8
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 252 KAESARDDYRIKLE-IQSKQMEDL------ELKLNSLEETAGEAR-YLKDEVDILRETAE 303
K E D + +E + +E L E + ++ EA+ L+ + LRE A
Sbjct: 387 KVEKKLDKLGLSIEDVFLHGLELLKEKVLEEKANSEIDIDFEEAKAELEAQFKRLREEAA 446
Query: 304 KVEK-YEGIIETYKKKAEELVD--LKKQVKQLESKNLSYIQQTLDLEEELKKNGNW 356
K++ EG +E + K + ++ K+ +K K+ ++Q L+ L NG
Sbjct: 447 KIDPSLEGALEANEAKILKQLEFLEKRLLKAQRRKHEELLRQFDRLQTALFPNGAP 502
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 30.3 bits (68), Expect = 2.9
Identities = 23/139 (16%), Positives = 57/139 (41%), Gaps = 2/139 (1%)
Query: 492 KMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQ-QEEHLE 550
K K+ E AE + ++ KV+ E++ ++++L E+I QEE
Sbjct: 68 KEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEE-EVKEQLQSLLEKIVVSKQEEDGP 126
Query: 551 QGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKN 610
+ + +DS+ + + K E+ ++ + + + + K ++N
Sbjct: 127 GKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQEN 186
Query: 611 DDKDKMLDDLEKTLEKKEQ 629
+D + ++ E+T + +
Sbjct: 187 EDSKEPVEKAERTKAETDD 205
>gnl|CDD|132062 TIGR03017, EpsF, chain length determinant protein EpsF. Sequences
in this family of proteins are members of the chain
length determinant family (pfam02706) which includes the
wzc protein from E.coli. This family of proteins are
homologous to the EpsF protein of the methanolan
biosynthesis operon of Methylobacillus species strain
12S. The distribution of this protein appears to be
restricted to a subset of exopolysaccharide operons
containing a syntenic grouping of genes including a
variant of the EpsH exosortase protein. Exosortase has
been proposed to be involved in the targetting and
processing of proteins containing the PEP-CTERM domain
to the exopolysaccharide layer.
Length = 444
Score = 30.5 bits (69), Expect = 2.9
Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 26/198 (13%)
Query: 229 VEPTNKGNSSMRRQMDALKEELFKAESARDDY-RIKLEIQSKQMEDLEL-KLNSLEETAG 286
VEP K +Q+ AL+E+L +A+S Y + K + S + D+E +LN L
Sbjct: 166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLV 225
Query: 287 EARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDL 346
A+ + + + +I + +LK + + ESK +L
Sbjct: 226 AAQAQVMDASSKEGGSSGKDALPEVIAN-----PIIQNLKTDIARAESK-------LAEL 273
Query: 347 EEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKS-----EFENKKLQEKVTSLQRE 401
+ L N Q + +++ L +Q N E K+ S ++ E +L+ +
Sbjct: 274 SQRLGPN---HPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQ 330
Query: 402 KEKLIVERDSLKETNEEL 419
K K++ L +E+
Sbjct: 331 KAKVL----ELNRQRDEM 344
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 30.5 bits (69), Expect = 3.0
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 320 EELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETK 379
EE +L+K+ +QL+ + Y Q LEE K S + +K++ +L + K
Sbjct: 4 EEWKELEKEFQQLQETHRLYKQ---KLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKK 60
Query: 380 RADKSEFE 387
+ E
Sbjct: 61 SLTPEDSE 68
>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 260 amino acids in
length.
Length = 250
Score = 30.3 bits (69), Expect = 3.0
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 481 NAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQ 540
A LD + ++ ++I + + + +I +L EI+NL+
Sbjct: 21 AASLDQALAAAQQTVAAAAQSQKKIDKWADQ--------TQELLAEIRQLLKEIENLRVY 72
Query: 541 INHQQEEHLEQGKLIEKLQDSITQ 564
+ Q Q + I LQ I Q
Sbjct: 73 NDQLQRLVANQQQEIASLQQQIEQ 96
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 30.8 bits (70), Expect = 3.2
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 245 ALKEELFKAESARDDYRIKL---EIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
+ EL AESA+ + ++L + SK+ E+ E + EE +A ++ E+ I +
Sbjct: 14 QSRRELLTAESAQLEAALQLLQEAVNSKRQEEAE---PAAEEAELQAELIQQELAINDQL 70
Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLE 333
++ + + + +L +L Q+ Q
Sbjct: 71 SQALNQQTERLNALASDDRQLANLLLQLLQSS 102
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 30.0 bits (68), Expect = 3.3
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 12/154 (7%)
Query: 448 ITELRQKLVRLTHENNMLQ------MNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKA 501
I +L + RL ++ + + + L + +L+D+ QV E ++
Sbjct: 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEI 71
Query: 502 NQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDS 561
+RI E +L E L EI+ KE+IN ++E E + IEKL+
Sbjct: 72 RERIKRAEEKLSAVKDERELR------ALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125
Query: 562 ITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQ 595
I ++ E+ + + + Q
Sbjct: 126 IEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159
>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region. This family
represents an N-terminal conserved region found in
several huntingtin-associated protein 1 (HAP1)
homologues. HAP1 binds to huntingtin in a polyglutamine
repeat-length-dependent manner. However, its possible
role in the pathogenesis of Huntington's disease is
unclear. This family also includes a similar N-terminal
conserved region from hypothetical protein products of
ALS2CR3 genes found in the human juvenile amyotrophic
lateral sclerosis critical region 2q33-2q34.
Length = 307
Score = 30.2 bits (68), Expect = 3.3
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 437 ENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTL 496
E+ S + L++KL L EN L+ L ++ QQ+ +
Sbjct: 152 ESSSSSHGCFQLEALQEKLKLLEEENEHLRSEAS-----HLKTETVTYEEKEQQLVNDCV 206
Query: 497 EN-RKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLI 555
+ R+AN +I L EL + TED + +I L ++I +L+++ E+ E + +
Sbjct: 207 KQLREANDQIASLSEEL-AKKTEDLERQQEEITHLLSQIVDLQKKCKSYALENEELQQHL 265
Query: 556 EKLQDSITQKDSEIQDYEEKNRKYIE 581
+D+ Q +E+Q+ ++K + +E
Sbjct: 266 AAAKDAQRQLQAELQELQDKYAECME 291
>gnl|CDD|216215 pfam00961, LAGLIDADG_1, LAGLIDADG endonuclease.
Length = 99
Score = 28.4 bits (64), Expect = 3.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 59 KIKTDIGANNWRLKISNLKKINEGIVDYFQEY 90
IK N R ++SN KK+ E I+ YF +Y
Sbjct: 53 SIKKRKKDNTVRYRVSN-KKLLEKIIPYFNKY 83
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to
other hisS proteins, and actually serve as regulatory
subunits for an enzyme of histidine biosynthesis. They
were excluded from the seed alignment and score much
lower than do single copy histidyl-tRNA synthetases of
other genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the
noise cutoff [Protein synthesis, tRNA aminoacylation].
Length = 397
Score = 30.1 bits (69), Expect = 3.6
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 64 IGANNWRLKISNLK------KINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELAR 117
+G ++ L+I++L + E ++ Y ++ D+ LGE + K I + +
Sbjct: 150 LGIKDFTLEINSLGILEGRLEYREALLRYLDKHLDK-LGEDSVRRLEKNPLRILDSKNEK 208
Query: 118 LMQLI 122
+ +L+
Sbjct: 209 IQELL 213
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 30.3 bits (69), Expect = 3.8
Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 26/126 (20%)
Query: 70 RLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINC 129
R+ I +L I E + DY K D ++ E + L + I
Sbjct: 547 RVSIRDLPTILETLADY---------APITK-DPDELTEKVRQ----ALGRQI----TQQ 588
Query: 130 NRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDAR 189
+N +++ L+ S++Q+++ S+Q+ + LDP + + ++ V +
Sbjct: 589 LLDENGELEVITLDPSLEQLLLNSLQK------GGELDELPLDPDLLEKL--IRQVKEEL 640
Query: 190 DQMAQR 195
+++ Q+
Sbjct: 641 ERVEQK 646
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 29.3 bits (66), Expect = 3.8
Identities = 23/111 (20%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 470 KDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAEL---KERVTEDAAGMKVK 526
++E +L ++ + ++ Q + + ++A Q++LE E EL K+ + + ++
Sbjct: 45 NQELEVELELLREDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKKELQKKIEDLEEN 104
Query: 527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNR 577
+ +L+ + KNL +Q++ +E E K L + T+ +Y E+ +
Sbjct: 105 VRQLELKAKNLSDQVSRLEERETELKKEYNSLHERYTKLLKNYVEYVERQK 155
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 30.0 bits (68), Expect = 4.2
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 488 TQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQ--- 544
+ A L E AA + EL+ E+ L+E +
Sbjct: 68 ALEPADPAKLPATAEPLELPAPLEEPAAPAAQAAEPLLPEAELRKELSALRELLERLLAG 127
Query: 545 ---QEEHLEQGKLIEKLQD 560
Q E KL+E+L +
Sbjct: 128 LALQRRDPEGAKLLERLLE 146
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 30.3 bits (69), Expect = 4.4
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 25/125 (20%)
Query: 228 FVEPTNKGNSS--MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETA 285
FV P + N +++++ LK++L + + E Q +++ LE LEE
Sbjct: 134 FVPPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQ 193
Query: 286 GEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLD 345
E L+ +++ L+E A + E K+ Q + L+
Sbjct: 194 QE---LEAQLEQLQEKAAETS------------QERKQKRKEITDQAAKR--------LE 230
Query: 346 LEEEL 350
L EE
Sbjct: 231 LSEEE 235
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 30.3 bits (69), Expect = 4.5
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 482 AKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQI 541
A L+D+ ++ + + LE EA L E A ++ ++ L+ E+ L+ +
Sbjct: 419 AALEDLRRR-----IAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARW 473
Query: 542 NHQQE 546
++E
Sbjct: 474 QQEKE 478
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 30.0 bits (68), Expect = 4.6
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 542 NHQQEEHLEQGKLIEKLQDSITQKDSEIQ------DYEEKNRKYIEKANSAFKLLDPTVQ 595
NHQ+ K +EKLQ+ I +++ E K S F+ + +
Sbjct: 266 NHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLD 325
Query: 596 NVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEK 632
A + E K +KK + K K ++ LE+ +EK E Q
Sbjct: 326 --AEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQAT 360
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 29.6 bits (67), Expect = 4.6
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 22/125 (17%)
Query: 448 ITELRQKLVRLTHENNMLQ------MNQKDDIEGKLNI---------VNAKLDDVTQQVK 492
+ ELR L RL EN L+ + + +GKL +L+ + ++
Sbjct: 22 LYELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARIS 81
Query: 493 MKTLENRKANQRILELEAELKER---VTEDAAGMKVKIF----ELQNEIKNLKEQINHQQ 545
E + +RI EL+ L +R ++ + ++ + +LQ+EIK + ++N
Sbjct: 82 QLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNALH 141
Query: 546 EEHLE 550
E
Sbjct: 142 SLLAE 146
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.9 bits (67), Expect = 4.8
Identities = 30/205 (14%), Positives = 77/205 (37%), Gaps = 14/205 (6%)
Query: 444 DSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKAN- 502
+ V + + Q + ++ + +D+ + + A E+ +
Sbjct: 303 EIVTVLQDAQGVGKIVSNVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQG 362
Query: 503 ---QRILELEAELKERVTEDAAGMKVKIFELQN-------EIKNLKEQINHQQEEHLEQG 552
Q+ILE + E + + G + EI+ L+E I + G
Sbjct: 363 GLVQKILETKKEYETGSGSASPGETEASSAAKKERDSSAREIEQLRESIQTLTKSANPLG 422
Query: 553 KLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKK-ND 611
KL++ +Q+ I E++ + + R+ + + + ++ + +L L + D
Sbjct: 423 KLLDFIQEDIDSMQRELEMWRSEYRQQAQALQQERRATEEALEPLKD--QLAELEQAIKD 480
Query: 612 DKDKMLDDLEKTLEKKEQQEKLIAT 636
+ K+ + L+ + + +KL+ +
Sbjct: 481 QRSKISNVRANILKNEAKIQKLLMS 505
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 29.9 bits (68), Expect = 4.9
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 488 TQQVKMKTLENRKAN--QRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKE 539
Q + LE+ K ++ L ++R+ + +K ++ L+ EI+ LKE
Sbjct: 17 EPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKE 70
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 30.1 bits (68), Expect = 4.9
Identities = 36/199 (18%), Positives = 81/199 (40%), Gaps = 14/199 (7%)
Query: 378 TKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGE 437
K+ + + E L++K+ Q ++ KL + SL+ L+ QL ++ +L L +
Sbjct: 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEA-QLIETA-DDLKKLRK 94
Query: 438 NLDLSEDSVPI--TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKT 495
+ + + R++ RL + LQ + ++ +V+ + D + V++
Sbjct: 95 QIADLNARLNALEVQEREQRRRLAEQLAALQRSGRN--PPPALLVSPE--DAQRSVRLAI 150
Query: 496 LENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEE----HLEQ 551
N E LK + A ++ +I Q E+ L + QQ + E+
Sbjct: 151 YY-GALNPARAERIDALK-ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEER 208
Query: 552 GKLIEKLQDSITQKDSEIQ 570
K + +L ++ +++
Sbjct: 209 KKTLAQLNSELSADQKKLE 227
>gnl|CDD|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella
typhimurium ZntB_like family. A family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. Members of this family are found in all three
kingdoms of life. It is a functionally diverse family,
including the Mg2+ transporters Escherichia coli and
Salmonella typhimurium CorAs (which can also transport
Co2+, and Ni2+ ), and the Zn2+ transporter Salmonella
typhimurium ZntB which mediates the efflux of Zn2+ (and
Cd2+). It also includes two Saccharomyces cerevisiae
members: the inner membrane Mg2+ transporters
Mfm1p/Lpe10p, and Mrs2p, and a family of Arabidopsis
thaliana members (AtMGTs) some of which are localized to
distinct tissues, and not all of which can transport
Mg2+. Structures of the intracellular domain of Vibrio
parahaemolyticus and Salmonella typhimurium ZntB form
funnel-shaped homopentamers, the tip of the funnel is
formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, such as
occur in some ZntB family proteins, may be associated
with the transport of different divalent cations, such
as zinc and cadmium. The functional diversity of MIT
transporters may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 285
Score = 29.6 bits (67), Expect = 5.3
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 239 MRRQMDALKEELFKAESARDDYRIKLEIQ------SKQMEDLELKLNSLEETAGEARYLK 292
+++ L+ +L + +A RI LE++ + +E + L +L+E E + +
Sbjct: 123 FEEKLEELEWDLLEGNNAIKLDRI-LELRRELLRLTNLIEPQQEVLMALQEAFAELLFSE 181
Query: 293 DEVDILRETAEKVEKYEGIIETYKKKAEELVDL 325
DE + LR T +++E+ +IE Y+++ + L D+
Sbjct: 182 DEEE-LRRTLDRIERLLQLIEEYEQELDTLQDI 213
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 29.9 bits (67), Expect = 5.3
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKD 293
G + + ++DA K EL KA +A + E Q D ++ + A AR L
Sbjct: 237 SGQALTKEELDAKKAELSKALAALEAANAADE--DPQDRDAAVEAAARLMGA--ARALVP 292
Query: 294 EVDILRETAEKVEK 307
+ +T + +
Sbjct: 293 GLITDGKTCSAIRE 306
>gnl|CDD|221419 pfam12097, DUF3573, Protein of unknown function (DUF3573). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 372 to 530 amino acids in length.
Length = 375
Score = 29.8 bits (67), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 514 ERVTEDAAGMKVKIFELQNEIKNLKEQINHQQE 546
+ T+ K I +LQ +IK+L+ QINH +E
Sbjct: 31 IQQTDSNQIDKKDISKLQKQIKSLQAQINHLEE 63
>gnl|CDD|239911 cd04465, S1_RPS1_repeat_ec2_hs2, S1_RPS1_repeat_ec2_hs2: Ribosomal
protein S1 (RPS1) domain. RPS1 is a component of the
small ribosomal subunit thought to be involved in the
recognition and binding of mRNA's during translation
initiation. The bacterial RPS1 domain architecture
consists of 4-6 tandem S1 domains. In some bacteria, the
tandem S1 array is located C-terminal to a
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
(HMBPP reductase) domain.While RPS1 is found primarily
in bacteria, proteins with tandem RPS1-like domains have
been identified in plants and humans, however these lack
the N-terminal HMBPP reductase domain. This CD includes
S1 repeat 2 of the Escherichia coli and Homo sapiens
RPS1 (ec2 and hs2, respectively). Autoantibodies to
double-stranded DNA from patients with systemic lupus
erythematosus cross-react with the human RPS1 homolog.
Length = 67
Score = 27.0 bits (61), Expect = 5.9
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 382 DKSEFENKKLQEKVTSLQREKEKLIVER 409
D E+ K+L+ K+ + RE+ +++ R
Sbjct: 39 DLDEYVGKELKFKIIEIDRERNNIVLSR 66
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 29.6 bits (67), Expect = 6.1
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 348 EELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQR------- 400
EELK G + D + L + E KR K EN+ L+ + LQ+
Sbjct: 45 EELKALG---IEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101
Query: 401 --------EKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPIT 449
E ++L E + LK +E + L L + +P+
Sbjct: 102 QIQQAVQSETQELTKEIEQLK--SERQQLQGLIDQLQRRLAGVLTGPSGGGSDLPVG 156
>gnl|CDD|240361 PTZ00326, PTZ00326, phenylalanyl-tRNA synthetase alpha chain;
Provisional.
Length = 494
Score = 29.6 bits (67), Expect = 6.2
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 293 DEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQ----------- 341
VD +R + V K + K ++EL +LKK+ K + + Y
Sbjct: 134 SVVDTVRLLLKIVAKGS---QAEKIDSKELKELKKR-KLATLEKIKYFVVTKGPKFAKEI 189
Query: 342 --QTLDLEEELKKNGNWK 357
Q DL +E+ NG+WK
Sbjct: 190 KKQITDLTQEMLLNGSWK 207
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 29.6 bits (66), Expect = 7.0
Identities = 83/428 (19%), Positives = 164/428 (38%), Gaps = 31/428 (7%)
Query: 172 DPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEP 231
++ L EL+T+ + M Q +L ++ ++EK+ L E L +
Sbjct: 300 KTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYELERKHNTL 359
Query: 232 TNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAG-EARY 290
T K + A +EE +D R + E +++ L+ K+ +L+ET + R
Sbjct: 360 TKKT-----ASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRRKERR 414
Query: 291 LKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEEL 350
LK+E + LR + + +E +K E + +++K+ ++ Y Q+ + +
Sbjct: 415 LKEEKERLRSL-QTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYK-- 471
Query: 351 KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD 410
K+ + K +V + ++SE Q + K K + + E EK R+
Sbjct: 472 KEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEK---IRE 528
Query: 411 SLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVP-----ITELRQKLVRLTHENNML 465
++ +ELK + + + + S + L +L + E +
Sbjct: 529 KHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVDRLLDRLEKAEQERDDT 588
Query: 466 QMNQKDDIEGKLNIVNAKLDDVTQQVK---MKTLENRKANQRILELEAELKERVTEDAAG 522
+M + A+ QQ K + RK+ + + E E K E+
Sbjct: 589 EMEAG---RLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLEEAERLEKSEAEEETLR 645
Query: 523 MKVKIFELQNEIKNLKEQINHQQEEHLEQGKL--------IEKLQDSITQKDSEIQDYEE 574
+I Q N E + E L+Q + +EK Q S+ + E+ E
Sbjct: 646 QSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAEREQLVAQLEKSQQSLMEFQQELNAAEA 705
Query: 575 KNRKYIEK 582
+ RK++E+
Sbjct: 706 ERRKHLEE 713
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 29.1 bits (66), Expect = 7.5
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 376 EETKRADKSEFENKKLQEKVTSLQREKEKLIVER----DSLKETNEELKC 421
+ET +E E +KL++K +SL E ++ I+ER + L+ T E+L C
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPEDLSC 53
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 29.4 bits (66), Expect = 7.6
Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 14/176 (7%)
Query: 364 KKQMSELYNQFN------EETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNE 417
K E + N ++ + E +N+ L++ + ++ K++L E + LKE
Sbjct: 503 KTFYGEFKEEINVLIEKLSALEK--ELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560
Query: 418 ELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKL 477
K ++++ A E + + + K ++ + L+ ++ +
Sbjct: 561 NKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQ--- 617
Query: 478 NIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNE 533
N + D + +V+ + +I+++ K VT MKV EL+
Sbjct: 618 KPTNFQADKIGDKVR---IRYFGQKGKIVQILGGNKWNVTVGGMRMKVHGSELEKI 670
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 27.6 bits (62), Expect = 7.6
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 13 NILLKWLQTFTLVAPHQS----LADITDGVAMAQALHQIAPE 50
LL+W+ D+ DG+A+ L+++ P
Sbjct: 2 KALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPG 43
>gnl|CDD|226391 COG3874, COG3874, Uncharacterized conserved protein [Function
unknown].
Length = 138
Score = 28.2 bits (63), Expect = 7.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 550 EQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588
E+G L+EKL D + Q +I+ KN K E + K
Sbjct: 94 EKGHLLEKLVDMVPQIIEKIKGMIGKNNKNPENGKTEVK 132
>gnl|CDD|221380 pfam12017, Tnp_P_element, Transposase protein. Protein in this
family are transposases found in insects. This region is
about 230 amino acids in length and is found associated
with pfam05485.
Length = 236
Score = 29.1 bits (65), Expect = 7.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 591 DPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAF 638
+ V N L E K+LR+K +K + L + LE+ +Q EK + F
Sbjct: 8 EDKVINHTTLMENKSLRQKIRALEKEMHSLRQQLEESQQLEKSLGKIF 55
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.4 bits (67), Expect = 7.9
Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 34/170 (20%)
Query: 499 RKANQRILELEAELK--ERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGK--- 553
R+ Q+ E EA LK E++ E+ ++ K +LQ E L E+ + ++ +++ K
Sbjct: 530 RELEQKAEEAEALLKEAEKLKEE---LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586
Query: 554 --LIEKLQDSITQKDSEI--QDYEEKNRKYIEKANSAFKLLDPTVQNVAALNE-----LK 604
+I++L+ + + + E ++ + K + L
Sbjct: 587 DEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYL 646
Query: 605 NLRKK------NDDKD--------KM---LDDLEKTLEKKEQQEKLIATA 637
+L +K DDK+ KM L DLEK + K++++K T
Sbjct: 647 SLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTV 696
>gnl|CDD|217135 pfam02601, Exonuc_VII_L, Exonuclease VII, large subunit. This
family consist of exonuclease VII, large subunit
EC:3.1.11.6 This enzyme catalyzes exonucleolytic
cleavage in either 5'->3' or 3'->5' direction to yield
5'-phosphomononucleotides. This exonuclease VII enzyme
is composed of one large subunit and 4 small ones.
Length = 295
Score = 29.2 bits (66), Expect = 7.9
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 448 ITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILE 507
TEL QKL L + N+ + + +LN++ +L + + + LE +R+ E
Sbjct: 145 RTELLQKLEGLEQRLSRALKNRLEKEQDRLNLLRERL----KSLSRRLLEQH--EERLAE 198
Query: 508 LEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQD 560
L L + + K L+ I N + + N E L L +L+
Sbjct: 199 LRDRLISSIQNL---LSRKQSRLERLILNRELEKNSLLENKLATANLTAQLKA 248
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 28.3 bits (64), Expect = 8.1
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 279 NSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLE 333
+ + EA + E+ K+ +Y+ Y+ +A+E L+ + K+ E
Sbjct: 56 LAADLLELEAAAPRAELQ------AKIARYKKEKARYRSEAKE---LEAKAKEAE 101
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 29.4 bits (67), Expect = 8.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 293 DEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLES 334
D+ DI E E++++ IIE +K+ EEL++ + +LE
Sbjct: 650 DDEDIPEEAKEEIDE---IIEEAEKRVEELIEAYEN-GELEP 687
>gnl|CDD|226396 COG3879, COG3879, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 247
Score = 28.9 bits (65), Expect = 8.3
Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 506 LELEAELKERVTEDAAGMKV---KIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSI 562
+ L + V + + G V + +L E+++L++++N E + ++ ++ S+
Sbjct: 28 MLLAGVMLAAVFQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSV 87
Query: 563 TQKDSEIQDYEEKNRKYI 580
D+ ++D EK R
Sbjct: 88 LTDDAALEDRLEKLRMLA 105
>gnl|CDD|193531 cd05654, M20_ArgE_RocB, M20 Peptidase Arginine utilization protein,
RocB. Peptidase M20 family, ArgE RocB (Arginine
utilization protein, RocB; arginine degradation protein,
RocB) subfamily. This group of proteins is possibly
related to acetylornithine deacetylase (ArgE) and may be
involved in the arginine and/or ornithine degradation
pathway. In Bacillus subtilis, RocB is one of the three
genes found in the rocABC operon, which is sigma L
dependent and induced by arginine. The function of
members of this family is as yet unknown, although they
are predicted as deacetylases.
Length = 535
Score = 29.1 bits (66), Expect = 8.4
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 17/120 (14%)
Query: 479 IVNAKLDDVTQQVKMKTLE--NRKANQRILELEAELKERVTEDAAGMKVKIF-ELQNEIK 535
+ +V +++K E N+ + + +KV + EL E K
Sbjct: 297 TLEKSPKEVMEKLKKIATEAFENTINEAYEKYCRLSNKPGDSLPWKVKVLTYEELYEEAK 356
Query: 536 NLKEQINHQQEEHLEQGKLIEK-LQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTV 594
G+ EK L++ + D E + +E + K P V
Sbjct: 357 KKG-------------GEKFEKFLEELEKKLLDGELDLREATIRIVEALLALCKDKAPAV 403
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 26.8 bits (60), Expect = 9.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 603 LKNLRKKNDDKDKMLDDLEKTLEKKEQQEK--LIATAFYNLAL 643
L N K K L ++ LEKK++ +K +I++ LAL
Sbjct: 23 LNNNVVAKKKKLKKLKKIDDDLEKKKKNKKKIIISSIASGLAL 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.127 0.336
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,701,873
Number of extensions: 3422959
Number of successful extensions: 7669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5946
Number of HSP's successfully gapped: 1094
Length of query: 684
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 581
Effective length of database: 6,369,140
Effective search space: 3700470340
Effective search space used: 3700470340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (27.7 bits)