RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11659
(684 letters)
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA,
riken structural genomics/proteomics initiative, unknown
function; NMR {Mus musculus} SCOP: a.40.3.1
Length = 164
Score = 157 bits (397), Expect = 7e-45
Identities = 80/160 (50%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 6 EDQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIG 65
LC+ L+ WLQTF +P Q + +T+GV MAQ LHQI WFSE WL++IK D+G
Sbjct: 5 SSGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVG 64
Query: 66 ANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGC 125
+NWR+K SNLKK+ GI Y+ E+ Q + E D+++I E D EL RL+QLILGC
Sbjct: 65 -DNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGC 123
Query: 126 AINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTH 165
A+NC +KQ +I IM LEESVQ V+M +IQEL + G +
Sbjct: 124 AVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSGPSS 163
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 87.6 bits (217), Expect = 6e-18
Identities = 58/335 (17%), Positives = 126/335 (37%), Gaps = 20/335 (5%)
Query: 239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEV--- 295
++ KE KAE+ + K ++ L+ KL + E EA ++ +
Sbjct: 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921
Query: 296 -----DILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEEL 350
+IL E ++E+ E E ++ E +++Q+ LE + L+ E
Sbjct: 922 KQELEEILHEMEARIEEEE---ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Query: 351 KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD 410
++ + + + +Q N+ TK E L + + + + L ++
Sbjct: 979 VT---ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Query: 411 SLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQK 470
+ EL+ +L++ + + L + ++L +++ L + L+ Q
Sbjct: 1036 KHESMISELEV-RLKKEEKSRQELEKIKRKLEGE---SSDLHEQIAELQAQIAELK-AQL 1090
Query: 471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFEL 530
E +L A+L+D T Q + R+ I +L+ +L E + + +L
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL-ESEKAARNKAEKQKRDL 1149
Query: 531 QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQK 565
E++ LK ++ + Q +L K
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 84.9 bits (210), Expect = 4e-17
Identities = 54/346 (15%), Positives = 139/346 (40%), Gaps = 17/346 (4%)
Query: 288 ARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLE 347
R ++ E E+ + K+ ++ L ++ L+ K + + + E
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912
Query: 348 EELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIV 407
E + K + ++ + E+ + EE +R+ + + E KK+Q+++ L+ + E+
Sbjct: 913 EMRVRLAAKKQE---LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 408 ERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQM 467
R L+ ++ + +++ + ED +KL+ + +
Sbjct: 970 ARQKLQLEKVTAD---------GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 468 NQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKI 527
++++ L + K + + +++++ + K+ Q ELE ++K ++ +++ + +I
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ---ELE-KIKRKLEGESSDLHEQI 1076
Query: 528 FELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAF 587
ELQ +I LK Q+ ++EE +E +I++ E E S
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136
Query: 588 KLLDPTVQNVAALN-ELKNLRKKNDDKDKMLDDLEKTLEKKEQQEK 632
+ + L+ EL+ L+ + +D ++ + +
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 71.0 bits (174), Expect = 8e-13
Identities = 51/308 (16%), Positives = 119/308 (38%), Gaps = 32/308 (10%)
Query: 113 KELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLD 172
E + +KQ + E+E +++ + Q+L+ + L+
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE-EEERSQQLQAEKKKMQQQMLDLE 961
Query: 173 PQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPT 232
Q++ A Q + + + +++ + +++++ + L +E++ LEER +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD-----L 1016
Query: 233 NKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLK 292
+ + L + K ES + ++L+ + K ++LE LE GE+ L
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE---GESSDLH 1073
Query: 293 DEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
+++ L+ +++ KK EEL + LE+E +
Sbjct: 1074 EQIAELQAQIAELK------AQLAKKEEELQAALAR-----------------LEDETSQ 1110
Query: 353 NGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412
N ++ + +S+L E +K+E + + L E++ +L+ E E + +
Sbjct: 1111 KNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170
Query: 413 KETNEELK 420
+E
Sbjct: 1171 QELRGSDY 1178
Score = 64.9 bits (158), Expect = 7e-11
Identities = 52/294 (17%), Positives = 119/294 (40%), Gaps = 34/294 (11%)
Query: 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREK----EKLIVERDSLKETNEEL 419
+++M + +R K+E E K+L++K T L EK EKL E + E E
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 420 KCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNI 479
++ + E+ + E+ ++ + LQ +K ++ ++
Sbjct: 916 VRLAAKKQELEEI---------------LHEMEARIEEEEERSQQLQ-AEKKKMQQQMLD 959
Query: 480 VNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKE 539
+ +L++ + LE A+ +I ++E ++ + + + + L+ + +L
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI-MEDQNNKLTKERKLLEERVSDLTT 1018
Query: 540 QINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAA 599
+ ++E+ KL K + I++ + ++ EEK+R+ +EK +
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKK-EEKSRQELEKIKRKLE----------- 1066
Query: 600 LNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNR 653
E +L ++ + + +L+ L KKE++ + + QK R
Sbjct: 1067 -GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Score = 47.1 bits (112), Expect = 2e-05
Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 5/160 (3%)
Query: 138 KIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCM 197
K L + + I ELE L+ + L E + + ++ +
Sbjct: 1026 KAKNLTKLKNKH-ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 198 ELDMQVSMLQEEKSCL---VEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAE 254
EL Q++ +EE +E++ + + E + S ++ +++ K KAE
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH-ISDLQEDLESEKAARNKAE 1143
Query: 255 SARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDE 294
+ D +LE ++ED + +E G D+
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 41.7 bits (98), Expect = 9e-04
Identities = 29/207 (14%), Positives = 77/207 (37%), Gaps = 15/207 (7%)
Query: 132 KQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQ 191
K KI ++E+ + + +L L + + + + +++
Sbjct: 978 KVTADGKIKKMEDDILIME-DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Query: 192 MAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENF--VEPTNKGNSSMRRQMDALKEE 249
EL++++ ++ + L + KR+LE + + + ++ Q+ +EE
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Query: 250 LFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARY-----------LKDEVDIL 298
L A + +D + K++ +LE ++ L+E + L +E++ L
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Query: 299 RET-AEKVEKYEGIIETYKKKAEELVD 324
+ + ++ E ++ D
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYKDDDD 1183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.1 bits (194), Expect = 2e-15
Identities = 96/629 (15%), Positives = 196/629 (31%), Gaps = 170/629 (27%)
Query: 141 ELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCME-- 198
++++ + ++ S +E++++ S +++ L T++ +++M Q+ +E
Sbjct: 37 DVQDMPKSIL--SKEEIDHIIMSKDAVS-----GTLRL---FWTLLSKQEEMVQKFVEEV 86
Query: 199 LDMQVSMLQEEKSCLVEEKRRLEERFQE------NFVEPTNKGNSSMRRQMDALKEELFK 252
L + L + + + E N + K N S + L++ L +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 253 ---------------------AESARDD----------YRIKLEIQSKQMEDLELKLNSL 281
+ + + L+ + LE+ L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 282 EETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDL-----KKQVK--QLES 334
+ D ++ ++ + K L+ L K L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 335 KNL---SYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKL 391
K L + Q T L +D + ++ +E K K L
Sbjct: 267 KILLTTRFKQVTDFLSAATTT----HISLDHHSMTLTP------DEVK-----SLLLKYL 311
Query: 392 QEKVTSLQREKEK-------LIVERDSLKE---TNEELK---CCQLQQSKSAELNTLGEN 438
+ L RE +I E S+++ T + K C +L + LN L
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 439 L------DLS--EDSVPITELRQKLVRL----THENNMLQMNQ--------KDDIEGKLN 478
LS S I L + + M+ +N+ K E ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 479 IVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLK 538
I + ++K+K ++ I++ K F+ + I
Sbjct: 428 I-----PSIYLELKVKLENEYALHRSIVDHYNIPKT-------------FDSDDLIPPYL 469
Query: 539 EQ-----INHQQEEHLEQGKLIEKLQDSITQKDSEIQDY---EEKNRKYIEKANSAFKLL 590
+Q I H HL+ + E++ D+ E+K R N++ +L
Sbjct: 470 DQYFYSHIGH----HLKNIEHPERM-TLFRMV---FLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 591 DPTVQNVAALNELKNLRK---KNDDK-DKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQ 646
+ L +LK + ND K +++++ + L K E E LI + + +L L+
Sbjct: 522 N-------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDL-LRIA 571
Query: 647 RQTADNRLASITFSQQPQSFLTKQRQASR 675
D + F +Q R
Sbjct: 572 LMAEDEAI-----------FEEAHKQVQR 589
Score = 69.9 bits (170), Expect = 2e-12
Identities = 62/410 (15%), Positives = 135/410 (32%), Gaps = 105/410 (25%)
Query: 300 ETAEKVEKYEGIIETYKKK------AEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353
ET E +Y+ I+ ++ +++ D+ K + L + + +I + D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLR- 66
Query: 354 GNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLK 413
+ E+ +F EE R + +F ++ + I +RD L
Sbjct: 67 -----LFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 414 ETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENN-----MLQMN 468
N+ + + + P +LRQ L+ L N +L
Sbjct: 121 NDNQVFAKYNVSRLQ------------------PYLKLRQALLELRPAKNVLIDGVLGS- 161
Query: 469 QKDDIEGKLNIVNAKLDDVTQQVKMK------TLENRKANQRILELEAELKERVTED--- 519
GK + Q KM L+N + + +LE+ +L ++ +
Sbjct: 162 ------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 520 ----AAGMKVKIFELQNEIKNLKEQINHQQE----EHLEQGKLIEKLQDS----ITQKDS 567
++ +K++I +Q E++ L + ++ +++ K S +T +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 568 EIQDY---EEKNRKYIEKANSAF----------KLLDPTVQN---------------VAA 599
++ D+ ++ + K LD Q+ +A
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 600 L-----NELKNLRKKNDDK-DKMLDDLEKTLEKKEQQEKLIATAFYNLAL 643
N + N DK +++ LE E ++ F L++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-----MFDRLSV 380
Score = 36.8 bits (84), Expect = 0.025
Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 18/130 (13%)
Query: 566 DSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKD--KMLDDLEKT 623
D E +++ + + + AF + ++V + K++ K + D + T
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV-DNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 624 ---LEKKEQQEKLIATAFYNLALQK---------QRQTADNRLASITFSQQPQSFLTKQR 671
+++ + F L+ + + + + + +Q +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 672 QASRRNV-RP 680
++ NV R
Sbjct: 125 VFAKYNVSRL 134
Score = 32.9 bits (74), Expect = 0.39
Identities = 41/237 (17%), Positives = 75/237 (31%), Gaps = 64/237 (27%)
Query: 2 NNTQEDQSELCNILL--KWLQTFTLVAPHQSLADITDGVAMAQALHQI------APEWFS 53
++ ++L L K + T+ P L ++ + ALH+ P+ F
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 54 EMWLAKIKTDIGANNWRLKIS-NLKKI-NEGIVDYFQE-YFDQALGEF--GKVDVHKIVE 108
L D + I +LK I + + F+ + D F K+
Sbjct: 461 SDDLIPPYLD---QYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAW 514
Query: 109 NIDAKELARLMQLILGCAINCNRK-QNYITKIMELEESVQQVIMQSIQELE-NLHGSTHS 166
N L L QL + + YI E + I+ + ++E NL S ++
Sbjct: 515 NASGSILNTLQQL---------KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 167 LNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEER 223
+L+ ++A L E + EE + +R
Sbjct: 566 ----------DLL-----------RIA------------LMAEDEAIFEEAHKQVQR 589
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 60.9 bits (148), Expect = 1e-09
Identities = 37/228 (16%), Positives = 88/228 (38%), Gaps = 16/228 (7%)
Query: 183 QTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQ 242
+I + + + + + C + E + + R
Sbjct: 867 SIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK-----------IEARS 915
Query: 243 MDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEET-AGEARYLKDEVDILRET 301
++ K+ E+ + K++ Q+K+ + L K+N+LE T + E L+ +V+ LR +
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975
Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEEL-KKNGNWKSQV 360
E+ + EE+ L+K++ Q +++ + + + E + K Q
Sbjct: 976 EEEAKNAT---NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 361 DMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVE 408
+ K + EL + +++ K ++ + + K L E+L +
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 57.4 bits (139), Expect = 1e-08
Identities = 49/287 (17%), Positives = 106/287 (36%), Gaps = 33/287 (11%)
Query: 262 IKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEE 321
++ + K+ + + +L+ L+ + + E II+ + +
Sbjct: 826 QRMYVVRKRYQCMRDATIALQA------LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA 879
Query: 322 LVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRA 381
V + +K + Y + E + K V+ YKK L N+ + ++
Sbjct: 880 RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI--EARSVERYKKLHIGLENKIMQLQRKI 937
Query: 382 DKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDL 441
D+ E K L EK+ +L+ E + L+ E L+ + + + L L
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYST---ETEKLRSDVERLRMSEEEAKNATN-----RVLSL 989
Query: 442 SEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKA 501
E+ I +LR++L + E ++ D + + + ++L + +N
Sbjct: 990 QEE---IAKLRKELHQTQTEKKTIE-EWADKYKHETEQLVSELKE----------QNTLL 1035
Query: 502 NQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEH 548
EL + ++ E M+ K L E K L+ +N ++ +
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKK---LVEETKQLELDLNDERLRY 1079
Score = 56.7 bits (137), Expect = 2e-08
Identities = 43/268 (16%), Positives = 100/268 (37%), Gaps = 12/268 (4%)
Query: 205 MLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKA-ESARDDYRIK 263
++Q+ + V KR R ++ +G + L+E + + +
Sbjct: 821 IIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLAR 880
Query: 264 LEIQSKQMEDLELKLNSLEETA-GEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEEL 322
+ + L+ A E + LK E + + E I ++K +E
Sbjct: 881 VHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940
Query: 323 VD-LKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRA 381
K ++++ + ++Y +T L ++++ + + ++ L + + K
Sbjct: 941 NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
Query: 382 DKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDL 441
+++ E K ++E + E E+L+ E LKE N LK ++ ELN +
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLK------TEKEELNRRIHDQAK 1051
Query: 442 SEDSVPITELRQKLVRLTHENNMLQMNQ 469
+L ++ +L + N ++
Sbjct: 1052 EITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 54.0 bits (130), Expect = 1e-07
Identities = 39/252 (15%), Positives = 96/252 (38%), Gaps = 30/252 (11%)
Query: 383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLS 442
+++++ + K +Q+ + + + + A+ E L
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR----ELKKLK 910
Query: 443 EDSVPITELRQKLVRLTHENNMLQMNQK-DDIEGKLNIVNAKLDDVTQQVKMKTLENRKA 501
++ + ++ + L EN ++Q+ +K D+ + + K++++ +T + R
Sbjct: 911 IEARSVERYKKLHIGL--ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
Query: 502 NQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDS 561
+R+ E E K ++ LQ EI L+++++ Q E + +K +
Sbjct: 969 VERLRMSEEEAKN--------ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Query: 562 ITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLE 621
Q SE+++ + E+ N ++ D ++ + +K L +
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNR--RIHD-------------QAKEITETMEKKLVEET 1065
Query: 622 KTLEKKEQQEKL 633
K LE E+L
Sbjct: 1066 KQLELDLNDERL 1077
Score = 46.6 bits (111), Expect = 3e-05
Identities = 21/173 (12%), Positives = 63/173 (36%), Gaps = 19/173 (10%)
Query: 181 ELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMR 240
++ + + M+L ++ +E L+E+ LE +
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST------------ET 962
Query: 241 RQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRE 300
++ + E L +E + ++ +++ L +L+ + E + +++ D +
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT---EKKTIEEWADKYKH 1019
Query: 301 T-AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
+ V + + K + EE L +++ + +++ L E + +
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEE---LNRRIHDQAKEITETMEKKLVEETKQLE 1069
Score = 42.4 bits (100), Expect = 5e-04
Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 138 KIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCM 197
KIM+L+ + + + + L + + ++++ V L+ + R +
Sbjct: 929 KIMQLQRKIDEQNKE-YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 198 ELDMQVSMLQEEKSCLVEEKRRLEERFQ------ENFVEPTNKGNSSMRRQMDALKEELF 251
L +++ L++E EK+ +EE E V + N+ ++ + + L +
Sbjct: 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047
Query: 252 KAES-ARDDYRIKLEIQSKQME 272
+ KL ++KQ+E
Sbjct: 1048 DQAKEITETMEKKLVEETKQLE 1069
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 7e-07
Identities = 86/565 (15%), Positives = 164/565 (29%), Gaps = 205/565 (36%)
Query: 85 DYFQEYFDQALGEFGKVDVHKIVENIDAKEL-ARLMQLILGCAINCNRKQNYITKIMELE 143
+ F + + F D E EL + + Y++ ++E
Sbjct: 35 EQFNKILPEPTEGFAADD-----EPTTPAELVGKFLG--------------YVSSLVEPS 75
Query: 144 ESVQ--QVIMQSIQELEN--LHGS-THSLNMSLDPQVQNLVAELQTVI----DARDQMAQ 194
+ Q QV+ + E EN L G+ H+L L + + + + +I AR MA+
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR-IMAK 134
Query: 195 RCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAE 254
R P +K ++S LF+A
Sbjct: 135 R-----------------------------------PFDKKSNS----------ALFRA- 148
Query: 255 SARDDYRIKLEI---QSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGI 311
+ ++ I Q N+ + Y +E LR+ Y
Sbjct: 149 VGEGNAQLVA-IFGGQG----------NTDD-------YF-EE---LRDL------Y--- 177
Query: 312 IETYKKKAEELVD-----LKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ 366
+TY +L+ L + ++ Q L++ E W
Sbjct: 178 -QTYHVLVGDLIKFSAETLSELIRTTLDAE-KVFTQGLNILE-------WLENPS---NT 225
Query: 367 MSELY-------------NQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIV------ 407
+ Y Q A F +L+ + + L+
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 408 --ERDSLKETNEE---------LKCCQLQQSKSAELNTLGENLDLSEDSVP-----ITEL 451
+S + + ++C + + S + L ++L+ +E VP I+ L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSPMLSISNL 344
Query: 452 RQKLV--RLTHENNMLQMNQKDDIE---GKLNIV----------------NAKLDDVTQQ 490
Q+ V + N+ L ++ +I G N+V AK Q
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 491 VKMKTLENRKAN--QRIL--------ELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQ 540
++ RK R L L + + +D V K+++
Sbjct: 405 SRIP-FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-----NAKDIQIP 458
Query: 541 INHQQEEHLEQGKLIEKLQDSITQK 565
+ G + L SI+++
Sbjct: 459 V-----YDTFDGSDLRVLSGSISER 478
Score = 45.0 bits (106), Expect = 8e-05
Identities = 48/320 (15%), Positives = 104/320 (32%), Gaps = 94/320 (29%)
Query: 358 SQVDMYKKQMS-ELYNQF---NEETKRADKSEFENKKLQEKVTSLQREKEKLIVERD--S 411
SQ ++ M +LY + RAD + S+ IV + +
Sbjct: 1626 SQ----EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF-----SILD-----IVINNPVN 1671
Query: 412 LKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPI-TELRQKLVRLTHENNMLQMNQK 470
L K +++++ SA +D + I E+ + T +
Sbjct: 1672 LTIHFGGEKGKRIRENYSA--MIFETIVDGKLKTEKIFKEINEHSTSYTFRSE------- 1722
Query: 471 DDIEGKLNIVNAKLDDVTQ--QVKMKTLENRKANQRILELEAELKER--VTEDA------ 520
+G L+ TQ Q + +E KA E LK + + DA
Sbjct: 1723 ---KGLLSA--------TQFTQPALTLME--KA---AFED---LKSKGLIPADATFAGHS 1763
Query: 521 ----------AGMKVKIFELQNEIKNLKE--QINHQQEEHLEQGK--------LIEKLQD 560
A + +++ ++ + E G+ ++
Sbjct: 1764 LGEYAALASLAD----VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 561 SITQKDSE--IQDYEEKNRKYIEKANSAFKLLDPTVQ-----NVAALNELKNLRKKNDDK 613
S +Q+ + ++ ++ +E N + + Q ++ AL+ + N+ +
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVN--YNV--ENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 614 DKMLDDLEKTLEKKEQQEKL 633
+ +L+K+L +E + L
Sbjct: 1876 KIDIIELQKSLSLEEVEGHL 1895
Score = 42.3 bits (99), Expect = 6e-04
Identities = 49/302 (16%), Positives = 93/302 (30%), Gaps = 89/302 (29%)
Query: 162 GSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLV----EEK 217
GS M +D + A Q V + D + + ++ + + E+
Sbjct: 1625 GS-QEQGMGMDLYKTSKAA--QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 218 RRLEERFQENFVEPTNKGNSSMRRQMDALKEEL----FKAESARDDYRIKLEI----Q-- 267
+R+ E + E G + + E F++E L Q
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG------LLSATQFTQPA 1735
Query: 268 ----SK-QMEDLELKLN----------SLEETAGEARY-----------LKDEVDILRE- 300
K EDL+ K SL GE Y ++ V+++
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSL----GE--YAALASLADVMSIESLVEVVFYR 1789
Query: 301 ---TAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNG--- 354
V + E Y A ++ + + L Y+ +E K+ G
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIA---INPGRVAASFSQEALQYV-----VERVGKRTGWLV 1841
Query: 355 -----NWKSQVDMY-----KKQMSELYNQFNE-ETKRADKSEFENKKLQEKVTSLQREKE 403
N ++Q Y + + + N N + ++ D +LQ+ + SL+ +
Sbjct: 1842 EIVNYNVENQQ--YVAAGDLRALDTVTNVLNFIKLQKID-----IIELQKSL-SLEEVEG 1893
Query: 404 KL 405
L
Sbjct: 1894 HL 1895
Score = 41.6 bits (97), Expect = 0.001
Identities = 46/284 (16%), Positives = 87/284 (30%), Gaps = 109/284 (38%)
Query: 219 RLEERFQENFVEPTNKGN-----SSMRRQMDALKEEL------FKAESARDDYRIKLEIQ 267
+L+E+F + EPT ++ EL + + +
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTT--------PAELVGKFLGYVSSLVEPS-------K 76
Query: 268 SKQMED-LELKLNSLEETAGEARYLKDEVDI-------LRETAEKVEKYEGIIETYKKKA 319
Q + L L L E YL+ DI L+E + K + +I+ Y A
Sbjct: 77 VGQFDQVLNLCLTEFENC-----YLEGN-DIHALAAKLLQENDTTLVKTKELIKNY-ITA 129
Query: 320 EELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQF----- 374
+ + K+ S + + GN ++L F
Sbjct: 130 RIMAK-RPFDKKSNSALFRAVGE-----------GN------------AQLVAIFGGQGN 165
Query: 375 NEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNT 434
++ FE +L++ L + L+ D +K + E L +L ++
Sbjct: 166 TDDY-------FE--ELRD----LYQTYHVLV--GDLIKFSAETLS--ELIRTTLDAEKV 208
Query: 435 LGENLDL-----------SED-------SVPITELRQKLVRLTH 460
+ L++ +D S P+ + Q L H
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----LAH 248
Score = 32.7 bits (74), Expect = 0.47
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 45/101 (44%)
Query: 616 ML-------DDLEKTLEKKEQ---QEKLIATAFYN------------------LALQKQR 647
ML + ++ + K K + + N L L+K +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 648 QTADNRLASITFSQ-QPQ---SFLTKQRQASRRNVRPV-AP 683
+ + I FS+ + + FL PV +P
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFL------------PVASP 426
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 45.3 bits (107), Expect = 4e-05
Identities = 17/105 (16%), Positives = 37/105 (35%)
Query: 471 DDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFEL 530
I L+ K+D Q ++ + + +L ++ D + I
Sbjct: 23 CGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAA 82
Query: 531 QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
+ + + E+I + L I LQ+ + +I + +EK
Sbjct: 83 TLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEK 127
Score = 31.0 bits (70), Expect = 1.3
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 319 AEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEET 378
++L L+ + Q+E+K Q ++ + + K + + +
Sbjct: 37 DKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPN------MIDAATLKSRKML 90
Query: 379 KRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
+ K E + LQ + +LKE +L
Sbjct: 91 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 131
Score = 29.9 bits (67), Expect = 2.9
Identities = 17/142 (11%), Positives = 53/142 (37%), Gaps = 6/142 (4%)
Query: 137 TKIMELEESVQQVIMQSI---QELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMA 193
+ LE+ + QV ++ Q ++ + + + S + + + +++ +
Sbjct: 38 KDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYE 97
Query: 194 QRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALK--EELF 251
+ D + LQE + ++ L+E+ + + +++ K +++
Sbjct: 98 ASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIA 157
Query: 252 KAESARDD-YRIKLEIQSKQME 272
+ + Y IK ++Q
Sbjct: 158 NKGAKQSGLYFIKPLKANQQFL 179
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 43.0 bits (101), Expect = 4e-04
Identities = 48/322 (14%), Positives = 105/322 (32%), Gaps = 40/322 (12%)
Query: 143 EESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQ 202
E++ QV + + L+ + + + + + RD + + +
Sbjct: 1815 PEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVY--IH 1872
Query: 203 VSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRI 262
++ + L + R+ N+V P + + + + + E+ + E + I
Sbjct: 1873 QTIGEANIRLLKRQGRQ-------NYVTPRHY-LDFINQVVLLINEKRDQLEEEQLHLNI 1924
Query: 263 KLE------IQSKQM-EDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETY 315
L+ Q K + L K L+ +A ++ ++ AE +K
Sbjct: 1925 GLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK---DAREL 1981
Query: 316 KKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFN 375
+ + + K +L + T L EE++ +L N N
Sbjct: 1982 QVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVE-----------------QLENAAN 2024
Query: 376 EETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTL 435
E + D+ L++ + + + E LI E + +K + K A L+ L
Sbjct: 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS--KVKNKVDRSIALLDNL 2082
Query: 436 -GENLDLSEDSVPITELRQKLV 456
E + S +V
Sbjct: 2083 NSERGRWEQQSENFNTQMSTVV 2104
Score = 33.3 bits (76), Expect = 0.34
Identities = 30/203 (14%), Positives = 68/203 (33%), Gaps = 28/203 (13%)
Query: 389 KKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPI 448
+ EK L+ E+ L + L++T ++K DL +
Sbjct: 1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVK-------------------DLQVS---L 1943
Query: 449 TELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILEL 508
+ ++L + N + K D + + N++ + ++
Sbjct: 1944 AQKNRELDVKNEQANQKLKQ----MVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKA 1999
Query: 509 EAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSE 568
A+L++ +V+ +L+N LK + + K I ++ E
Sbjct: 2000 YADLEKAEPTGPLREEVE--QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE 2057
Query: 569 IQDYEEKNRKYIEKANSAFKLLD 591
+ + ++ K K + + LLD
Sbjct: 2058 TEQIKTESSKVKNKVDRSIALLD 2080
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 42.7 bits (101), Expect = 4e-04
Identities = 20/181 (11%), Positives = 55/181 (30%), Gaps = 4/181 (2%)
Query: 453 QKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAEL 512
+ + L++ +++ + ++D ++ E+ +A + +EL+ +
Sbjct: 819 EAIYNSLQT--KLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALR--IELKRQK 874
Query: 513 KERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDY 572
K V +K E K++ N + ++ L+ + S
Sbjct: 875 KIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS 934
Query: 573 EEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEK 632
+ + P + + + + L LE+ ++ E
Sbjct: 935 NSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
Query: 633 L 633
L
Sbjct: 995 L 995
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 40.0 bits (94), Expect = 0.003
Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 2/169 (1%)
Query: 465 LQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMK 524
L++ +++ + ++D ++ E+ +A + L+ + ++ + + +K
Sbjct: 837 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 896
Query: 525 VKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKAN 584
E K++ N + ++ L+ + S + +
Sbjct: 897 KL--ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLT 954
Query: 585 SAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKL 633
P + + + + L LE+ ++ E L
Sbjct: 955 ELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 1003
Score = 37.0 bits (86), Expect = 0.024
Identities = 23/260 (8%), Positives = 73/260 (28%), Gaps = 19/260 (7%)
Query: 176 QNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKG 235
+ + + R + + ++ + + + + E KG
Sbjct: 763 GSEQTKSDYLK--RANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKG 820
Query: 236 NSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEV 295
+ + R+ + + +++ L + A L+ E+
Sbjct: 821 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSAL--EKAEQEHAEALRIEL 878
Query: 296 DILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGN 355
++ A ++KY KK + E+ + ++ +LK
Sbjct: 879 KRQKKIAVLLQKYN---RILKKLENWATTKSVYLGSNETGDS-----ITAVQAKLKNLEA 930
Query: 356 WKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKET 415
+ + + Q + + + + +L E+ + ++ + S +
Sbjct: 931 FDGECQSLEGQSNSDLLSILAQLTELNYNG--VPELTERKDTFFAQQWTG--VKSSAETY 986
Query: 416 NEELKCCQLQQSKSAELNTL 435
L + + ++ L
Sbjct: 987 KNTL---LAELERLQKIEDL 1003
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 38.6 bits (90), Expect = 0.005
Identities = 4/45 (8%), Positives = 19/45 (42%)
Query: 531 QNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
Q ++ + E++ ++ + I++L + + +++
Sbjct: 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQ 48
Score = 33.2 bits (76), Expect = 0.23
Identities = 6/57 (10%), Positives = 17/57 (29%)
Query: 514 ERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQ 570
+ + + ++ L+ + QI E + + +LQ +
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 39.1 bits (92), Expect = 0.006
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 206 LQEEKSCLVEEKRRLEERFQENFVEPTN-KGNSSMRRQMDALKEELFKAESARD-DYRIK 263
++ E + L EE +L ++ E + + ++D ++ E+ AE R D
Sbjct: 435 IEAEIAKLTEEIAKLRAEWER---EREILRKLREAQHRLDEVRREIELAE--RQYDLNRA 489
Query: 264 LEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGI 311
E++ ++ LE ++ +L E AR+++ EV + AE V ++ GI
Sbjct: 490 AELRYGELPKLEAEVEALSEKLRGARFVRLEVT-EEDIAEIVSRWTGI 536
Score = 31.7 bits (73), Expect = 1.0
Identities = 31/186 (16%), Positives = 77/186 (41%), Gaps = 50/186 (26%)
Query: 261 RIKLEIQSK--QMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKK 318
R+++ ++S +++ LE K LE E LK E D ++ E+++ E
Sbjct: 391 RLRMALESAPEEIDALERKKLQLEI---EREALKKEKD--PDSQERLKAIE--------- 436
Query: 319 AEELVDLKKQVKQLESK---NLSYIQQTLDLEEELKKNGNWKSQVDMYKKQ-----MSEL 370
E+ L +++ +L ++ +++ + + L + + ++++ ++Q +EL
Sbjct: 437 -AEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDE---VRREIELAERQYDLNRAAEL 492
Query: 371 -Y---NQFNEETKRADKSEFENKKLQEKVTS------------------LQREKEKLIVE 408
Y + E + + + ++ +VT L+ E+EKL+
Sbjct: 493 RYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRL 552
Query: 409 RDSLKE 414
+ L +
Sbjct: 553 EEELHK 558
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 37.8 bits (88), Expect = 0.010
Identities = 15/159 (9%), Positives = 52/159 (32%), Gaps = 17/159 (10%)
Query: 472 DIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQ 531
D K++ D + ++ + + + N + + + E++ + ++FE
Sbjct: 116 DTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGD---VEQIAAQSPVELSRMFEEV 172
Query: 532 NEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLD 591
+ K++ +E+ + K + + + E++ Y+ + +
Sbjct: 173 SGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLF---------- 222
Query: 592 PTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQ 630
+ + + + + L+ +K Q
Sbjct: 223 ----QGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQ 257
Score = 35.4 bits (82), Expect = 0.051
Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%)
Query: 202 QVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYR 261
S+ E ++ L++ K L FQ + + + + R + EE+ + + +Y
Sbjct: 130 DYSIFLENENILIKAKNFL--VFQGDVEQIAAQSPVELSR----MFEEVSGSIQYKKEYE 183
Query: 262 IKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEE 321
E K + + + GE + K + + +Y+ ++ E
Sbjct: 184 ELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNE 243
Query: 322 LVDLKKQVKQLES 334
LK + K++ +
Sbjct: 244 TEQLKAEEKKILN 256
Score = 35.1 bits (81), Expect = 0.068
Identities = 15/114 (13%), Positives = 39/114 (34%)
Query: 239 MRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDIL 298
+ + EL + + + E +E S E+ R + E+
Sbjct: 154 VEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTY 213
Query: 299 RETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
+ +V Y + + + +QL+++ + Q L ++++ K+
Sbjct: 214 KSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKE 267
Score = 30.4 bits (69), Expect = 2.0
Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 16/152 (10%)
Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTN 233
+ +I A++ + + +++ + E S + EE + +E
Sbjct: 130 DYSIFLENENILIKAKNFLVFQ-GDVEQIAAQSPVELSRMFEEVSGSIQYKKEY------ 182
Query: 234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAG-EARY-- 290
++ +++ L + ++ R +L+ ++ + E R+
Sbjct: 183 ---EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEV 239
Query: 291 LKDEVDILRETAEKVEKYEGIIETYKKKAEEL 322
+ +E + L+ +K+ KKK +EL
Sbjct: 240 INNETEQLKAEEKKILN---QFLKIKKKRKEL 268
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.021
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 601 NELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKLIA----TAFY-NLALQKQRQTADNRLA 655
E +++RK +++ K L +L+ + EQ+ + A + + Q ++ +NR+A
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 656 SITFSQQPQS 665
F QQP +
Sbjct: 142 DKAFYQQPDA 151
Score = 34.7 bits (79), Expect = 0.057
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 34/113 (30%)
Query: 294 EVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN 353
+ D L + E + K+ EE Q K+L+ +
Sbjct: 76 QADRLTQEPESIRKW----------REE------QRKRLQELD----------AASKVME 109
Query: 354 GNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLI 406
W+ + KK + E + +E + +K++ N+ + Q+ +I
Sbjct: 110 QEWREKA---KKDLEEWNQRQSE---QVEKNKINNRIADKAF--YQQPDADII 154
Score = 30.5 bits (68), Expect = 1.1
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 500 KANQRILELEA------ELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGK 553
+A++ E E+ E ++R+ E A KV E + + K E+ N +Q E +E+ K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 554 LIEKLQDS--ITQKDSEI 569
+ ++ D Q D++I
Sbjct: 136 INNRIADKAFYQQPDADI 153
Score = 29.4 bits (65), Expect = 2.6
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 174 QVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTN 233
Q L E +++ R++ +R ELD ++++E E+ ++ E + + E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE---WREKAKKDLEEWNQRQSEQVE 132
Query: 234 KGNSSMRRQMDALKEELFKAESARDD 259
K + R ++ F + D
Sbjct: 133 KNKINNRI-----ADKAFYQQ--PDA 151
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 36.8 bits (84), Expect = 0.027
Identities = 46/462 (9%), Positives = 148/462 (32%), Gaps = 29/462 (6%)
Query: 138 KIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCM 197
I LE + MQ++Q+ L+ Q + + + + +++ R
Sbjct: 269 TIPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPA 328
Query: 198 ELDMQVSMLQEEKSCLVEEKRRLEERFQE-----NFVEPTNKGNSSMRRQMDALKEELFK 252
+ + M+ + + ++ + + +E + R++ +
Sbjct: 329 FMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDG 388
Query: 253 AESARDDYRIK------LEIQSKQMEDLELKLNSLEETAGEARYLKDEV---------DI 297
E+ + ++ K+ E E L + ++ + + E+ +
Sbjct: 389 KEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSV 448
Query: 298 LRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWK 357
+ ++++ + +K+ E L +K ++ ++ L Y ++ ++
Sbjct: 449 NARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDL 508
Query: 358 SQVDMYK-----KQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSL 412
+ + ++ + QF ADK + +V+ + + + +
Sbjct: 509 QDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPY 568
Query: 413 KETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDD 472
+ + + + ++ LR++ + + ++
Sbjct: 569 TTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEE 628
Query: 473 IEGKLNIVNAKLDDVTQQVK--MKTLENRKAN-QRILELEAELKERVTEDAAGMKVKIFE 529
I ++ L+D ++ K++ N K ++ +++E + D +
Sbjct: 629 IGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEH 688
Query: 530 LQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQD 571
++ + L I E +E L + ++ +E +
Sbjct: 689 IRVGWEQLLTTIARTINE-VENQILTRDAKGISQEQMNEFRA 729
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 35.8 bits (82), Expect = 0.051
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 300 ETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKN----GN 355
E + K E ++ L DLK +V + + + Q ++ +L K +
Sbjct: 86 ELQTTLLKQEKTVK------PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139
Query: 356 WKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
+ Y +M YN + S + L+ + SL ++ +KL + +
Sbjct: 140 NDIILSEYNTEMELHYNYIKDNLDNNIPS--SLRVLRAVIDSLHKKIQKLENAIATQTD 196
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 34.9 bits (81), Expect = 0.075
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 532 NEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKY 579
++I LKE+I +E+ + I+ + + + + + E R
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 35.3 bits (80), Expect = 0.078
Identities = 49/501 (9%), Positives = 144/501 (28%), Gaps = 24/501 (4%)
Query: 43 ALHQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVD 102
L A ++F + + D ++ I + +Y Q + FG+
Sbjct: 221 KLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEI 280
Query: 103 VHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHG 162
K +A + ++ + + + + + +++L+ +
Sbjct: 281 ARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGK 340
Query: 163 STHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEE 222
+T + ++ + +L + + ++ + + E
Sbjct: 341 ATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANG 400
Query: 223 RFQE-NFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSL 281
N + Q K + ++ + ++ L+
Sbjct: 401 VLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDES 460
Query: 282 EETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQ 341
+D T + E L+ + + +Q
Sbjct: 461 LR----------LLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQ 510
Query: 342 QTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQRE 401
++E + + + + + K EL + ++ + SL
Sbjct: 511 ADGQVKECYQSH---RDTIVLLCKPEPELNAAIPSA---NPAKTMQGSEVVNVLKSLLSN 564
Query: 402 KEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHE 461
+++ ER+ L+ + + + L L ++ ++E+++ +TEL + LT +
Sbjct: 565 LDEVKKEREGLENDLKSVNFDMTSK----FLTALAQDGVINEEALSVTELDRVYGGLTTK 620
Query: 462 NNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAA 521
Q + + + + + + + +Q + + + + E V
Sbjct: 621 VQESLKKQ-EGLLKNIQVSHQEFSKM-KQSNNEANLREEVLKNLATAYDNFVELVANLKE 678
Query: 522 GMKVKIFELQNEIKNLKEQIN 542
G K EL + + + +
Sbjct: 679 GTKF-YNELTEILVRFQNKCS 698
Score = 32.2 bits (72), Expect = 0.67
Identities = 39/328 (11%), Positives = 98/328 (29%), Gaps = 47/328 (14%)
Query: 129 CNRKQNYITKIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTV--I 186
RK + + + + + + L ++ + + I
Sbjct: 377 NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGI 436
Query: 187 DARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVE-----PTNKGNSSMRR 241
DQ+ + EL + + +E L++E+ + + F E P+N+ +R
Sbjct: 437 QTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRA 496
Query: 242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEE-----TAGEARYLKDEVD 296
+ + L KA A + + + L L + + V+
Sbjct: 497 EGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVN 556
Query: 297 ILRETAEKVEKYEGIIETYKKKAEELVD-------------------------------- 324
+L+ +++ + E + + +
Sbjct: 557 VLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGG 616
Query: 325 LKKQVKQLESKNLSYIQQTLDLEEEL---KKNGNWKSQVDMYKKQMSELYNQFNEETKRA 381
L +V++ K ++ +E K++ N + + K ++ Y+ F E
Sbjct: 617 LTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANL 676
Query: 382 DKSEFENKKLQEKVTSLQREKEKLIVER 409
+ +L E + Q + ++ R
Sbjct: 677 KEGTKFYNELTEILVRFQNKCSDIVFAR 704
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 34.2 bits (78), Expect = 0.16
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 482 AKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQI 541
AKL ++ + + + + + N +I E + E V G E + + L + +
Sbjct: 97 AKLKELEDEQRNELVRLKY-NDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155
Query: 542 NHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588
+ E+ + +L ++ ++ E E K A K
Sbjct: 156 TSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALK 202
Score = 33.4 bits (76), Expect = 0.29
Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 303 EKVEKYEGIIETYKKK-----AEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWK 357
E ++ E + Y K +EL ++ + + + +Q L + + ++
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVT---SYN 159
Query: 358 SQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKE 414
+ QM L +E +++ E ++E + K + VERD ++E
Sbjct: 160 KILTEEDLQMRRLATALQKEI--GERTHAETVMVKEYRDKIDALKNAIEVERDGMQE 214
Score = 31.1 bits (70), Expect = 1.4
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 14/153 (9%)
Query: 205 MLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKE----ELFKAESARDDY 260
+E L +R ++ + +E +E + + D +KE EL + + +
Sbjct: 80 SGEEIPDPLSPGERGIQAKLKE--LEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGE 137
Query: 261 RIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVD--ILRETAEKVEKYEGIIETYKKK 318
KQ + L + S + E + + +E E+ +++ Y+ K
Sbjct: 138 ANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDK 197
Query: 319 AEELVDLKKQVKQLESKNLS--YIQQTLDLEEE 349
+ L K ++E + IQ+ + +
Sbjct: 198 IDAL----KNAIEVERDGMQEEAIQEIAGMTAD 226
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 33.5 bits (77), Expect = 0.26
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 5/120 (4%)
Query: 428 KSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDV 487
+ +L L L E + ++R ++R N + E + + K+
Sbjct: 88 AAVKLALESIALLLGESTTDWKQIRSIIMR----ENFIPTIVNFSAEEISDAIREKMKKN 143
Query: 488 TQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEE 547
E + + A M ++ L+NE++ L++ Q++
Sbjct: 144 YMSNPSYNYEIVNRASLAAGPMVKWA-IAQLNYADMLKRVEPLRNELQKLEDDAKDNQQK 202
Score = 29.3 bits (66), Expect = 5.7
Identities = 27/200 (13%), Positives = 79/200 (39%), Gaps = 15/200 (7%)
Query: 389 KKLQEKVTSLQR--EKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLSEDSV 446
K+L+++ R ++ + ++ ++L +E+L + Q+ + + ++ E+LD E +V
Sbjct: 5 KRLRQEPEVFHRAIREKGVALDLEALLAVDEQLH--KQQEVIADKQMSVKEDLDKVEPAV 62
Query: 447 PITELRQKLVRLTHENNMLQM-----NQKDDIEGK---LNIVNAKLDDVTQQVKMKTLEN 498
+ K ++ H + M K +E L + + +
Sbjct: 63 IEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIP 122
Query: 499 RKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEK- 557
N E+ ++E++ ++ +E+ N + L ++++
Sbjct: 123 TIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRV 182
Query: 558 --LQDSITQKDSEIQDYEEK 575
L++ + + + + +D ++K
Sbjct: 183 EPLRNELQKLEDDAKDNQQK 202
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 33.4 bits (76), Expect = 0.31
Identities = 45/342 (13%), Positives = 93/342 (27%), Gaps = 56/342 (16%)
Query: 83 IVDYF--QEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCAINCNRKQNYITKIM 140
IV + + A+ FG + +V E
Sbjct: 702 IVTFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAA----------------- 744
Query: 141 ELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELD 200
++ M + ELE P ++ +E + + E
Sbjct: 745 --TGEAKRGFMTVVSELEQRF-----------PDPTSIESE-----KEKKDFVKLFGEYL 786
Query: 201 MQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDY 260
++LQ + + + VE + + L+ A+ DY
Sbjct: 787 RAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDY 846
Query: 261 RIKLE------IQSKQMEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIET 314
R + K+ E E ++ E LK + L + ++ +
Sbjct: 847 RSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKG 906
Query: 315 YKKKAEELVDLKKQVKQLESK-----------NLSYIQQTLDLEEELKKNGNWKSQVDMY 363
+ EE+ L + +K NL + + + + Q +
Sbjct: 907 KGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREA- 965
Query: 364 KKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKL 405
+ + + N + KR ++ + + E T L KL
Sbjct: 966 -EALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKL 1006
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.45
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 11/30 (36%)
Query: 326 KKQVKQLESKNLS-Y---------IQQTLD 345
K+ +K+L++ +L Y I+ T++
Sbjct: 19 KQALKKLQA-SLKLYADDSAPALAIKATME 47
Score = 31.5 bits (70), Expect = 0.48
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 503 QRILELEAELKERVTEDAAGMKVK 526
Q + +L+A LK + A + +K
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK 43
Score = 31.5 bits (70), Expect = 0.49
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 574 EKNRKYIEKANSAFKLLDPTVQNVAALN 601
EK ++K ++ KL A+
Sbjct: 18 EKQA--LKKLQASLKLYADDSAPALAIK 43
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 32.3 bits (73), Expect = 0.66
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 23/162 (14%)
Query: 473 IEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQN 532
IE +L + N + + Q+ ++ L + N+ + + E +K + ++
Sbjct: 614 IEKELTVTNKPRNAIIQE--LENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEED 671
Query: 533 EIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP 592
E + ++ N G L I E Y++ ++ EK
Sbjct: 672 EESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKE--RYQKLLKQKQEK---------- 719
Query: 593 TVQNVAALNELKNLRKKNDDK--DKMLDDLEKTLEKKEQQEK 632
EL+NL K + + L E ++ Q++
Sbjct: 720 -------ETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDA 754
Score = 31.5 bits (71), Expect = 1.2
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 5/138 (3%)
Query: 213 LVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQME 272
L + QE + N + + +E+ + + E + E
Sbjct: 618 LTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHE 677
Query: 273 DLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDL-KKQVKQ 331
D E +N EE G YL + I T E+ +K +++ ++K EL +L K K
Sbjct: 678 DTENVINGPEELYGTYEYLLG-MRIWSLTKERYQK---LLKQKQEKETELENLLKLSAKD 733
Query: 332 LESKNLSYIQQTLDLEEE 349
+ + +L + +
Sbjct: 734 IWNTDLKAFEVGYQEFLQ 751
Score = 30.4 bits (68), Expect = 2.4
Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 2/156 (1%)
Query: 287 EARYLKDEVDILRETAEKV-EKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLD 345
+ L+ EV+ + + E + K ++ + +
Sbjct: 592 MSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSP 651
Query: 346 LEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREK-EK 404
+E ++ + K + + S + N + L ++ SL +E+ +K
Sbjct: 652 NDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQK 711
Query: 405 LIVERDSLKETNEELKCCQLQQSKSAELNTLGENLD 440
L+ ++ + E L + + +L
Sbjct: 712 LLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQ 747
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 31.9 bits (71), Expect = 0.75
Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 27/170 (15%)
Query: 181 ELQTVIDARDQ-MAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGN--- 236
+Q +ID DQ +QR + Q++ Q + +
Sbjct: 51 RMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYG 110
Query: 237 ---SSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKD 293
+ +RR++ LK+ + + + ++ Q +M+ LE+ ++
Sbjct: 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI------------- 157
Query: 294 EVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQT 343
++ + + + Y+ E Y +++K + Q S ++ QT
Sbjct: 158 KIRACKGSCARSFDYQVDKEGYD-------NIQKHLTQASSIDMHPDFQT 200
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 31.8 bits (72), Expect = 0.76
Identities = 13/94 (13%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 138 KIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVA----ELQTVIDARDQMA 193
I + + + E+E L + S++ +Q++ E QT+ + +Q+
Sbjct: 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLT 83
Query: 194 QRCMELDMQVSMLQEEKSCLVEEKRRLEERFQEN 227
Q+ ++ ++ + ++L + N
Sbjct: 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMN 117
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 30.2 bits (68), Expect = 0.77
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 8 QSELCNILLKWLQTFTLVAPHQSLA-DITDGVAMAQALHQIAPEWFS 53
E + L W+ L P ++L+ D +DGV +A+ + P+
Sbjct: 13 DEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVE 59
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 31.7 bits (72), Expect = 0.78
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 529 ELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFK 588
++ EI + I I LQ+ + +I + +EK + + K
Sbjct: 1 KMLEEIMKYEASILTHDSS-------IRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK 53
Query: 589 LLDP 592
Sbjct: 54 DTVQ 57
Score = 29.0 bits (65), Expect = 5.9
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 138 KIMELEESVQQVIMQSIQELENLHGSTHSLNMSLDPQVQNLVAELQT----VIDARDQMA 193
+IM+ E S+ SI+ L+ ++ S + ++L +V L A+ Q + D
Sbjct: 5 EIMKYEASILTH-DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITG 63
Query: 194 QRCMEL 199
+ C ++
Sbjct: 64 KDCQDI 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 31.3 bits (70), Expect = 1.2
Identities = 67/414 (16%), Positives = 129/414 (31%), Gaps = 52/414 (12%)
Query: 272 EDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQ 331
+K +LE + + VD L +E + I Y ++ +
Sbjct: 27 NQDSVKTYALES-------INNVVDQL--WSEISNELPDIEALYDDDTFSDREMAALIAS 77
Query: 332 LESKNLSYIQQTLD--LEEELKKNGNWKSQ-VDMYKKQMSELYNQFNEETKRADKSEFEN 388
NL + + L + + + + KSQ V+ + E+Y Q + D+ +
Sbjct: 78 KVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTK 137
Query: 389 KKLQEKVTSL---------QREKEK----LIVERDSLKETNEELKCCQLQQSKSAELNTL 435
+ K+TS+ + + K + +E L LK Q S S + +
Sbjct: 138 DIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKII 197
Query: 436 GENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKT 495
L L+ +V ++ R ++R + + MN + LN V L+D
Sbjct: 198 NYLLTLAITTVTNSKFRSSILRKSFD---FLMNMPNCDYLTLNKVVVNLNDA-------- 246
Query: 496 LENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLI 555
L+L +LKE D F+L + +I + +
Sbjct: 247 -------GLALQLFKKLKE--ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPAL 297
Query: 556 EKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDP--TVQNVAAL--NELKNLRKKND 611
+ + D I N + LD ++ + A N + ++
Sbjct: 298 LNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDN 357
Query: 612 DKDKMLDDLEKTLEKKEQQEKLIATAFYNLALQKQRQTADNRLASITFSQQPQS 665
+ L K + K ATA + + +A + S
Sbjct: 358 ---SFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASS 408
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 30.7 bits (70), Expect = 1.4
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 169 MSLDPQVQNLVAEL---------QTVIDARDQMAQRCMEL 199
M L P ++ ++ +L V R+Q + + L
Sbjct: 1 MPLSPILRQILQQLAAQLQFRPDMDVKTVREQFEKSSLIL 40
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 30.9 bits (70), Expect = 1.9
Identities = 43/373 (11%), Positives = 104/373 (27%), Gaps = 38/373 (10%)
Query: 271 MEDLELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVK 330
+E + +E E RY K E L + + K + ++ A +V V
Sbjct: 144 GVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVA 203
Query: 331 QLESKNLSYIQQT--------LDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRAD 382
++ L L ++K + + + E Y EE +
Sbjct: 204 LYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGE--ILAELP-EPYLFRAEEEGVVE 260
Query: 383 KSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLDLS 442
E E + + + + E+ +++ L + + +
Sbjct: 261 LKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAA 320
Query: 443 EDSVPITELRQKLVRLTHENNMLQMNQKDDIEGKLNIVNAKLDDVTQQVKMKTLENRKAN 502
+ E + V LT + +V +
Sbjct: 321 QV---EAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVV--PEGARVEAGDKIVAAIDPEE 375
Query: 503 QRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSI 562
+ I E E + +K +++ +++++ + + GK+ + +
Sbjct: 376 EVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRV 435
Query: 563 TQKDSEIQDYEEKNRKYIEKAN---SAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDD 619
+++ Y A A + L LK L D + + +
Sbjct: 436 E--VDLVRNVVRVVESYDIDARMGAEAIQQL------------LKEL-----DLEALEKE 476
Query: 620 LEKTLEKKEQQEK 632
L + ++ + +
Sbjct: 477 LLEEMKHPSRARR 489
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 30.7 bits (68), Expect = 2.0
Identities = 33/208 (15%), Positives = 77/208 (37%), Gaps = 2/208 (0%)
Query: 341 QQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQR 400
Q+ L + E K++ K + + S L + K+ +K ++ +
Sbjct: 381 QKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKL 440
Query: 401 EKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENL-DLSEDSVPITELRQKLVRLT 459
+ K + K E +SK + + + + L+E I R K
Sbjct: 441 QDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQ 500
Query: 460 HENNMLQMNQKDDIEGKLNIVNAKLDDVTQ-QVKMKTLENRKANQRILELEAELKERVTE 518
ML Q+ + + + + + Q KM+ + ++ L +L+E+
Sbjct: 501 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 560
Query: 519 DAAGMKVKIFELQNEIKNLKEQINHQQE 546
G + + ++NEI++L+ ++ ++
Sbjct: 561 LKEGFQKESRIMKNEIQDLQTKMRRRKA 588
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.7 bits (66), Expect = 2.3
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 568 EIQDYEEKNRKYIEKA-----NSAFKLLDPTVQNVAALNELKNLRKKNDDKDKMLDDLEK 622
E+ D ++K +K++ A N A +L P L + D+ + +D+L K
Sbjct: 152 ELSDTKQKGKKFLVIAYEPFENIAIEL--P------PNEILFSENNDMDNNNDGVDELNK 203
Query: 623 T 623
Sbjct: 204 K 204
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 29.3 bits (66), Expect = 3.4
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 387 ENKKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
EN+ L+E++ L + + ++ LK+ N++LK
Sbjct: 27 ENQHLKERLEELAQLESEV----ADLKKENKDLK 56
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 29.9 bits (66), Expect = 3.5
Identities = 26/220 (11%), Positives = 77/220 (35%), Gaps = 2/220 (0%)
Query: 201 MQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDY 260
+Q+ + E++ +++ + R + +E + + + L+E+L + ++A+++
Sbjct: 323 LQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL 382
Query: 261 RIKLEIQSKQMEDL-ELKLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKA 319
+ M+ L E K E ++ + + + ++VE + +++
Sbjct: 383 EQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEV 442
Query: 320 EELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETK 379
E+ + + + Q E + + + +L ++
Sbjct: 443 EDARRKQDEAAA-ALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVD 501
Query: 380 RADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEEL 419
++ + L+ K+ L D KET +
Sbjct: 502 PVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDK 541
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 28.0 bits (63), Expect = 3.6
Identities = 8/55 (14%), Positives = 29/55 (52%)
Query: 496 LENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLE 550
+ +K ++ LE EL++ + ++ + + + + E+ +++Q+ Q ++ +
Sbjct: 15 FQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQ 69
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
protein ST initiative; 2.50A {Enterococcus faecium}
Length = 587
Score = 29.6 bits (67), Expect = 3.6
Identities = 13/104 (12%), Positives = 35/104 (33%)
Query: 291 LKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEEL 350
++ L E ++ EK++G ++ + ++ +V + Y D +
Sbjct: 8 FDEKYLELSEELKQSEKHKGTLDQGASQFLNAIEFVLRVYRQTEVIYVYAHLKNDQDTGN 67
Query: 351 KKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEK 394
++ ++SE + F E + + +E
Sbjct: 68 TDYQALYARASSLFSKVSEAVSWFEPEILQLSDDQIWQYFKEEP 111
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 389 KKLQEKVTSLQREKEKLIVERDSLKETNEELKCC 422
+Q + L E++ L R+ LK E+L C
Sbjct: 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.8 bits (66), Expect = 4.0
Identities = 26/224 (11%), Positives = 67/224 (29%), Gaps = 20/224 (8%)
Query: 366 QMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETNEELKCCQLQ 425
+ + + A ++ T L + +++ + ++ L ++ +
Sbjct: 587 TFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVD------V 640
Query: 426 QSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMNQKDDIE----------- 474
QS + L S + HE L+ + +E
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE 700
Query: 475 ---GKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQ 531
+L + A V K +A +E E + + + A EL+
Sbjct: 701 KARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760
Query: 532 NEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEK 575
K + ++ + + + + ++L + +K E+ +
Sbjct: 761 RVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGP 804
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 28.8 bits (64), Expect = 4.5
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 70 RLKISNLKKINEGIVDYFQEYFDQALGEFGKVDV---HKIVENIDAKELARLMQLILGCA 126
RLKI L ++ + FQ F D +++E++D L +++
Sbjct: 72 RLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFT 131
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 29.5 bits (64), Expect = 4.5
Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 12/163 (7%)
Query: 242 QMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEVDILRET 301
++ A + EL + + A D + E L A K D +
Sbjct: 10 KLTAYQTELARVQKANADAKAAYEAAVAANNAANAALT-----AENTAIKKRNADAKADY 64
Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVD 361
K+ KY+ + Y+K +L D ++K E + S +LE+ ++GN
Sbjct: 65 EAKLAKYQADLAKYQK---DLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTE--- 118
Query: 362 MYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEK 404
Q + N +F + S K K
Sbjct: 119 -PSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSKAK 160
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 29.2 bits (66), Expect = 4.7
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEI 569
I EL+ +I +L ++ + + + +L++ + +I
Sbjct: 32 IAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 74
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 29.2 bits (66), Expect = 4.9
Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 357 KSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKVTSLQREKEKLIVERDSLKETN 416
+++ ++ L + + K+ E + Q V + + L ER SL+
Sbjct: 8 NNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVV 67
Query: 417 EELKCCQLQQSKSAELNTLGENLDLSEDSVPITELRQKLVRLTHENNMLQMN 468
+ L Q++Q +++ L E ++D E +L L + L+
Sbjct: 68 DTLD--QMKQ-GLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFR 116
>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein
biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear
protein, RNA-binding protein; HET: MSE; 2.0A {Homo
sapiens}
Length = 174
Score = 28.6 bits (64), Expect = 5.4
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 2 NNTQEDQSELCNILLKWLQTFT-LVAPHQSLADITDGVAMAQALHQIAPEWFSE 54
++++ D L L +L+ L + +LADI + + + + + +
Sbjct: 85 HSSKNDIHTLLMDLNSYLEDKVYLTGYNFTLADILLYYGLHRFIVDLTVQEKEK 138
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 28.2 bits (63), Expect = 5.7
Identities = 2/40 (5%), Positives = 7/40 (17%), Gaps = 3/40 (7%)
Query: 534 IKNLKEQINHQQEEHLEQGKLI---EKLQDSITQKDSEIQ 570
+ Q+ E + + +
Sbjct: 23 VVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYV 62
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 28.8 bits (64), Expect = 6.2
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 14 ILLKWLQTFTLVAPHQSL----ADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNW 69
+LL+W + Q + ADI D A L+QIAP+ + +I ++ N
Sbjct: 172 LLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPK-GQKEGEPRIDINMSGFNE 230
Query: 70 RLKISNLKKI 79
+ + +
Sbjct: 231 TDDLKRAESM 240
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 26.8 bits (60), Expect = 7.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 372 NQFNEETKRADKSEFEN--KKLQEKVTSLQREKEKLIVERDSLKETNEELK 420
Q + K +E ++L+ +V L +K ++ VERD+L E L+
Sbjct: 40 EQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 28.2 bits (62), Expect = 7.7
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 534 IKNLKEQINHQQEEHLEQGKLI---EKLQDSITQKD 566
+ +LK QI+ ++ L+ ++ D
Sbjct: 23 VLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTD 58
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 26.7 bits (59), Expect = 7.9
Identities = 7/73 (9%), Positives = 19/73 (26%), Gaps = 12/73 (16%)
Query: 511 ELKERVTEDAAGMKVKI---------FELQNEIKNLKEQINHQQEEHLEQGKLI---EKL 558
M++ + Q + +K + + E ++ L
Sbjct: 8 HHHSSGLVPRGSMQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPL 67
Query: 559 QDSITQKDSEIQD 571
+D T ++
Sbjct: 68 EDEATLGQCGVEA 80
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 28.8 bits (65), Expect = 8.2
Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 277 KLNSLEETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKN 336
K + L A +++ L E ++ + K E D K LE
Sbjct: 511 KKDDLTIVAHTFGLDAKKLNELIEKENEMLAQD-------KLVAETEDRKNT---LEE-- 558
Query: 337 LSYI---QQTLDLEEELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKK 390
YI + L+ E + K+++ + +++ +E + K+++ K
Sbjct: 559 --YIYTLRGKLEEEYAPFASDAEKTKL---QGMLNKAEEWLYDEGFDSIKAKYIAKY 610
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 28.3 bits (64), Expect = 8.3
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 496 LENRKANQRILELEAELKERVTEDAAGMKVKIFE----LQNEIKNLKEQINHQQEE 547
L + + ELE +L E E A ++ + FE L++ + L+EQ+ ++
Sbjct: 387 LRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS 442
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 28.2 bits (62), Expect = 9.3
Identities = 29/171 (16%), Positives = 68/171 (39%), Gaps = 11/171 (6%)
Query: 191 QMAQRCMELDMQVSMLQEEKSCLVEEKRRLEERFQENF-VEPTNKGNSSMRRQMDALKEE 249
Q+ QR EL + + E L + + ++QE+ ++ + Q +E
Sbjct: 16 QINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRET 75
Query: 250 LFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKDEV--DILRE------T 301
+ + + ++ E Q+ Q +EL ++T R + + D L +
Sbjct: 76 ALQQKQVSLETWLQREAQTLQQYRVEL-AEKHQKTLQLLRKQQTIILDDELIQWKRRQQL 134
Query: 302 AEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLEEELKK 352
A EG ++ + E+L ++ Q +Q + + ++ Q L + +++
Sbjct: 135 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQ-QIRRAEHLCQQLPIPGPVEE 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.336
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,649,807
Number of extensions: 595960
Number of successful extensions: 2588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2224
Number of HSP's successfully gapped: 462
Length of query: 684
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 584
Effective length of database: 3,909,693
Effective search space: 2283260712
Effective search space used: 2283260712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.3 bits)