RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11659
(684 letters)
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 164
Score = 163 bits (413), Expect = 1e-47
Identities = 80/156 (51%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 7 DQSELCNILLKWLQTFTLVAPHQSLADITDGVAMAQALHQIAPEWFSEMWLAKIKTDIGA 66
LC+ L+ WLQTF +P Q + +T+GV MAQ LHQI WFSE WL++IK D+G
Sbjct: 6 SGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVG- 64
Query: 67 NNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVENIDAKELARLMQLILGCA 126
+NWR+K SNLKK+ GI Y+ E+ Q + E D+++I E D EL RL+QLILGCA
Sbjct: 65 DNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCA 124
Query: 127 INCNRKQNYITKIMELEESVQQVIMQSIQELENLHG 162
+NC +KQ +I IM LEESVQ V+M +IQEL + G
Sbjct: 125 VNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG 160
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 35.4 bits (81), Expect = 0.020
Identities = 19/135 (14%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 162 GSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLE 221
+ + + P+ + + + ++ + ++ + D Q + E + +
Sbjct: 241 AARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAK 300
Query: 222 ERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSL 281
R + + + ++D ++ E+ AE D E++ ++ LE ++ +L
Sbjct: 301 LRAEWEREREILRKLREAQHRLDEVRREIELAERQ-YDLNRAAELRYGELPKLEAEVEAL 359
Query: 282 EETAGEARYLKDEVD 296
E AR+++ EV
Sbjct: 360 SEKLRGARFVRLEVT 374
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 33.4 bits (76), Expect = 0.084
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 4/144 (2%)
Query: 491 VKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFELQNEIKNLKEQINHQQEEHLE 550
+ E RKA R LEA D +++ K + +
Sbjct: 334 TRRTIFELRKARDRAHILEALAVALANID---PIIELIRHAPTPAEAKTALVANPWQLGN 390
Query: 551 QGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKLLDPTVQNVAALNELKNLRKKN 610
++E+ D + + ++ ++ Y A +LD +Q + L K L +
Sbjct: 391 VAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK-LLDEY 449
Query: 611 DDKDKMLDDLEKTLEKKEQQEKLI 634
+ + +L + L ++ ++I
Sbjct: 450 KELLDQIAELLRILGSADRLMEVI 473
Score = 28.8 bits (64), Expect = 2.7
Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 26/232 (11%)
Query: 105 KIVENIDAKELARLMQLILGCAINCNRKQNYITKIMELEESVQQVIMQSIQELENLHGST 164
KI E + K + + + + K I ++V +V++ ++ L S
Sbjct: 247 KIAELVKEKRVE-----GISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF 301
Query: 165 HSLNMSLD---PQVQNLVAELQTVIDARDQMAQRCMELDMQVSMLQEEKSCLVEEKRRLE 221
++L P++ NL + + R ++ R +++ +++ ++E
Sbjct: 302 GINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRK---ARDRAHILEALAV-- 356
Query: 222 ERFQENFVEPTNKGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSL 281
N + K L + LE E
Sbjct: 357 --ALANIDPIIELIRHAPTPAEA--KTALVANPWQLGNVAAMLERAGDDAARPEWLEPEF 412
Query: 282 EETAGEARYLKDEVD-IL-----RETAEKVEKYEGIIETYKKKAEELVDLKK 327
G + + IL + T + EK +++ YK+ +++ +L +
Sbjct: 413 GVRDGLYYLTEQQAQAILDLRLQKLTGLEHEK---LLDEYKELLDQIAELLR 461
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 32.5 bits (74), Expect = 0.098
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 16/113 (14%)
Query: 282 EETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQ 341
E+ E L +++ +KV +Y G + YK + E+ + + + K +
Sbjct: 1 EQENDEKTVLTKTSEVIISVGDKVGEYLG--DKYKALSREIAE---NINNFQGKTIRSYD 55
Query: 342 QTLDLEEELKKNGNWK-SQVD----------MYKKQMSELYNQFNEETKRADK 383
+ +L N + K + D + M + + K AD
Sbjct: 56 DAMSSINKLMANPSLKINATDKEAIVNAWKAFNAEDMGNKFAALGKTFKAADY 108
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Length = 297
Score = 31.1 bits (70), Expect = 0.40
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 16/113 (14%)
Query: 282 EETAGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLESKNLSYIQ 341
E+ E L +++ +K+ +Y G YK A+E+ + +K +N+
Sbjct: 97 EKEKNEKEALLKASELVSGMGDKLGEYLG--VKYKNVAKEVAN---DIKNFHGRNIRSYN 151
Query: 342 QTLDLEEELKKNGNWK-SQVD----------MYKKQMSELYNQFNEETKRADK 383
+ + ++ N K ++ D + K M+ + K AD
Sbjct: 152 EAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDMANKIGNLGKAFKVADL 204
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.8 bits (66), Expect = 1.3
Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 35/164 (21%)
Query: 470 KDDIEGKLNIVNAKLDDVTQQVKMKTLENRKANQRILELEAELKERVTEDAAGMKVKIFE 529
K IE +L + N + + EL+
Sbjct: 613 KMIIEKELTVTNKPRN---------------------AIIQELENLGFPRFN-------- 643
Query: 530 LQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEIQDYEEKNRKYIEKANSAFKL 589
K K +E EQ ++ ++S +D E E + L
Sbjct: 644 -----KEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYL 698
Query: 590 LDPTVQNVAALNELKNLRKKNDDKDKMLDDLEKTLEKKEQQEKL 633
L + ++ K L K+ +K+ L++L K K L
Sbjct: 699 LGMRIWSLTKERYQK-LLKQKQEKETELENLLKLSAKDIWNTDL 741
Score = 29.8 bits (66), Expect = 1.5
Identities = 16/160 (10%), Positives = 44/160 (27%), Gaps = 14/160 (8%)
Query: 289 RYLKDEVDILRETAEKVEKY-EGIIETYKKKAEELVDLKKQVKQLESKNLSYIQQTLDLE 347
L+ EV+ + ++ E + K ++ ++LE+ +
Sbjct: 596 ERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAII------QELENLGFPRFNKEGKPY 649
Query: 348 EELKKNGNWKSQVDMYKKQMSELYNQFNEETKRADKSEFENKKLQEKV---TSLQR---- 400
+ + D+ E + + E + E + +
Sbjct: 650 YGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKE 709
Query: 401 EKEKLIVERDSLKETNEELKCCQLQQSKSAELNTLGENLD 440
+KL+ ++ + E L + + +L
Sbjct: 710 RYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQ 749
Score = 28.3 bits (62), Expect = 3.8
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 234 KGNSSMRRQMDALKEELFKAESARDDYRIKLEIQSKQMEDLELKLNSLEETAGEARYLKD 293
+ N + + +E+ + + E + ED E +N EE G YL
Sbjct: 641 RFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLG 700
Query: 294 EVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQ-VKQLESKNLSYIQQTLDLEEE 349
+ I T E+ +K +++ ++K EL +L K K + + +L + +
Sbjct: 701 -MRIWSLTKERYQK---LLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQ 753
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.3 bits (65), Expect = 1.3
Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 8/111 (7%)
Query: 50 EWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVHKIVEN 109
++ WL I + N L + I DYF E+ E + +
Sbjct: 105 SIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRV 164
Query: 110 IDAKELARLMQLILGCAINCNRKQNYI--------TKIMELEESVQQVIMQ 152
AK R L + A R Y I + + +I +
Sbjct: 165 TRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin),
actin-crosslinking domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 28.1 bits (62), Expect = 1.5
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 14 ILLKWLQTFTLVAPHQSLADIT----DGVAMAQALHQIAPEWFSEMWLAKIKTDIGANNW 69
+LL+W + Q + + + D A L+QIAP+ + +I ++ N
Sbjct: 13 LLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQ-KEGEPRIDINMSGFNE 71
Query: 70 RLKISNLKKI 79
+ + +
Sbjct: 72 TDDLKRAESM 81
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 29.3 bits (65), Expect = 1.7
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 527 IFELQNEIKNLKEQINHQQEEHLEQGKLIEKLQDSITQKDSEI 569
I EL+ +I +L ++ + + + +L++ + +I
Sbjct: 9 IAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 51
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens
[TaxId: 76935]}
Length = 300
Score = 28.3 bits (62), Expect = 2.8
Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 45 HQIAPEWFSEMWLAKIKTDIGANNWRLKISNLKKINEGIVDYFQEYFDQALGEFGKVDVH 104
Q ++ + + ++ D G N +R + + +A+ +D++
Sbjct: 34 LQWYGQFVNYESMKWLRDDWGINVFRAAMYTSSGGYIDDPSVKE-KVKEAVEAAIDLDIY 92
Query: 105 KIVE 108
I++
Sbjct: 93 VIID 96
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain
{Thermotoga maritima [TaxId: 2336]}
Length = 173
Score = 27.9 bits (61), Expect = 3.3
Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
Query: 144 ESVQQVI-----MQSIQELENLHGSTHSLNMSLDPQVQNLVAELQTVIDARDQMAQRCME 198
E+V+ +I L NL G SL ++ ++AE++ +D D++ E
Sbjct: 7 EAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGE 66
Query: 199 LDMQVSMLQEEKSCLVEEKRRLEERFQENFVEPTNKGNSSMR-RQMDALKEELFKAESAR 257
+ ++ ++E+ + +++ + + + RQ L+ E A
Sbjct: 67 VVTRLERIKEKLTEELKKADAGILLNRGQEIFERGSDSLITNLRQKQLLENVKGHLEDAI 126
Query: 258 DDYRIKLEIQSKQMEDLELKLNSLEETAGE 287
+ + + DLE LN L+E G
Sbjct: 127 KSLKEGMPVD-MASIDLERALNLLDEVTGR 155
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor,
catalytic domain {Escherichia coli [TaxId: 562]}
Length = 295
Score = 27.9 bits (62), Expect = 3.6
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 80 NEGIVDYFQEYFDQAL------GEFGKVDVHKIVENI 110
N+ +VDY E F+ +L + + I +N+
Sbjct: 202 NDFLVDYLSENFEDSLITYSSSEKKPDSQITIIRDNV 238
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 273
Score = 27.7 bits (61), Expect = 3.8
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 285 AGEARYLKDEVDILRETAEKVEKYEGIIETYKKKAEELVDLKKQVKQLES 334
A + D V RE E + +IE K E++ + V +L++
Sbjct: 222 TAVALFALDRVGDFREGYEYADH---LIEKSLDKLNEIISMNGDVTKLKT 268
>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia
coli [TaxId: 562]}
Length = 124
Score = 26.5 bits (58), Expect = 5.2
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 63 DIGANNWRLKISNLKKINEGIVDYFQE--YFDQALGEFGKVDVHKIVENIDAKELARLMQ 120
D+G+N++ + I+ + I+ ++ + LG + + ++ L
Sbjct: 6 DLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERL 65
Query: 121 LILGCA 126
A
Sbjct: 66 QGFSPA 71
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 26.5 bits (58), Expect = 5.3
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 13 NILLKWLQTFTLVAPHQSLAD----ITDGVAMAQALHQIAPE 50
+ LL W Q T P+ ++ + DG+A +H+ P+
Sbjct: 5 DALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPD 46
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 25.6 bits (56), Expect = 5.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 389 KKLQEKVTSLQREKEKLIVERDSLKETNEELKCC 422
+Q + L E++ L R+ LK E+L C
Sbjct: 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.3 bits (59), Expect = 6.3
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 524 KVKIFELQNEIKNLKEQINHQQEEHLEQGKL--IEKLQD 560
E+ LK+ +++ +E+ +G +E++QD
Sbjct: 325 DPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQD 363
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
1 (Tip47), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 226
Score = 26.7 bits (59), Expect = 8.5
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 327 KQVKQLESKNLSYIQQTLDLEEELKKNGNWKSQVDMYK-KQMSELYNQFNEETKRADKSE 385
+ +Q + L + L L E +K+ + + K QM +NQ + D ++
Sbjct: 58 QNARQKAQETLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQMWLSWNQKTPQDAEKDPAK 117
Query: 386 FENKKLQ 392
E + +
Sbjct: 118 PEQVEAR 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.127 0.336
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,311,890
Number of extensions: 112847
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 119
Length of query: 684
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 593
Effective length of database: 1,158,166
Effective search space: 686792438
Effective search space used: 686792438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.5 bits)