BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11662
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1
Length = 773
Score = 270 bits (690), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/360 (43%), Positives = 204/360 (56%), Gaps = 64/360 (17%)
Query: 10 QEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERAT 69
++YWL CFEE+++ +RA+ASQ P S ERA
Sbjct: 445 RKYWLTCFEEALDGVVKRAVASQ--------------------------PDSVDAAERAE 478
Query: 70 KFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPY------ 123
KFR+KY ++L L+Q P AYG LTVRSLLDT EH L EF+FPDPY
Sbjct: 479 KFRQKYWNKLQTLRQQPF---------AYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQR 529
Query: 124 ---------------LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKAT-GGGAYKY 167
L+ + +E + +A +A N+ + K++ A Y
Sbjct: 530 ENGVALRCFPGVVRSLDALGWEERQLALVKGLLAGNVFD----WGAKAVSAVLESDPYFG 585
Query: 168 ANLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRG 227
+ KL PWLVD +WL RL GPPH A IF DNSGIDI+LG+ PF RELL RG
Sbjct: 586 FEEAKRKLQERPWLVDSYSEWLQRLK-GPPHKCALIFADNSGIDIILGVFPFVRELLLRG 644
Query: 228 TKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSR 287
T+VIL NS PALNDVT+SE +++ + A + ++ +AL RL+ ++T + PCLDLSR
Sbjct: 645 TEVILACNSGPALNDVTHSESLIVAERIAGMDPVVHSALQEERLLLVQTGSSSPCLDLSR 704
Query: 288 LGRDLATEL--SSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMFSV 345
L + LA + DL+V+EGMGR VHTN +A CESLKLAVIKN WLA+RLGG++FSV
Sbjct: 705 LDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKLAVIKNAWLAERLGGRLFSV 764
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGL 177
L F+KFE YI CLDFI +L+N+ + K I+ATGGGAYK+ +LI+EKL L
Sbjct: 91 LHFIKFENTYIEACLDFIKDHLVNT----ETKVIQATGGGAYKFKDLIEEKLRL 140
>sp|Q923S8|PANK4_RAT Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1
Length = 773
Score = 268 bits (686), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 200/357 (56%), Gaps = 58/357 (16%)
Query: 10 QEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERAT 69
++YWL CFEE+++ +RA+ASQ P S ERA
Sbjct: 445 RQYWLTCFEEALDGVVKRAVASQ--------------------------PESVDAAERAE 478
Query: 70 KFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKF 129
KFR+KY +L L+ P AYG LTVRSLLDT EH L EF+FPDPY + +
Sbjct: 479 KFRQKYWGKLQTLRHQPF---------AYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQK 529
Query: 130 ETKYIADCLDFIAANLINSIECMDGKSIKATG--------GGAYKYANLIQ--------- 172
E C + +L +S+ + + G GA +++++
Sbjct: 530 ENGLALKCFQSVTRSL-DSLGWEERQLALVKGLLAGNVFDWGAKAVSDVLESDPQFGFEE 588
Query: 173 --EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKV 230
KL PWLVD WL RL GPPH A IF DNSGIDI+LG+ PF RELL RG +V
Sbjct: 589 AKRKLQERPWLVDSYTKWLQRLK-GPPHKCALIFADNSGIDIILGVFPFVRELLCRGIEV 647
Query: 231 ILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGR 290
IL NS PALNDVTYSE +++ + A + II AL RL+ ++T + PCLDLSRL +
Sbjct: 648 ILACNSGPALNDVTYSESLIVAERIAAMDPIICTALREDRLLLVQTGSSPPCLDLSRLDK 707
Query: 291 DLATEL--SSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMFSV 345
LA + DL+V+EGMGR VHTN +A CESLKLAV+KN WLA+RLGGQ+FSV
Sbjct: 708 GLAVLVRERGADLVVIEGMGRAVHTNYHALLRCESLKLAVVKNAWLAERLGGQLFSV 764
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 27/102 (26%)
Query: 99 GNLTVRSLLDTIEHYL---KEFDFPD---------PY-----------LEFVKFETKYIA 135
G+LT + T++H + + FD P PY L F+KFE Y+
Sbjct: 43 GSLTKLAYYSTVQHKVAKVRSFDHPGKDAEQDHEPPYEISVQEEITARLHFIKFENTYME 102
Query: 136 DCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGL 177
CLDFI +L+N+ + K I+ATGGGAYK+ +LI+EKL L
Sbjct: 103 ACLDFIRDHLVNT----ETKVIQATGGGAYKFKDLIEEKLRL 140
>sp|Q5R5F8|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1
Length = 773
Score = 268 bits (686), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/360 (42%), Positives = 206/360 (57%), Gaps = 64/360 (17%)
Query: 10 QEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERAT 69
++YWL CFEE+++ +RA+ASQ P S ERA
Sbjct: 445 RKYWLTCFEEALDGVVKRAVASQ--------------------------PDSVDAAERAE 478
Query: 70 KFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKF 129
KFR+KY ++L L+Q P AYG LTVRSLLDT EH L EF+FPDPY + +
Sbjct: 479 KFRQKYWNKLQTLRQQPF---------AYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQR 529
Query: 130 ETKYIADCLDFIAANLINSIECM--DGKSIKATGG---------GAYKYANLIQ------ 172
E C ++ S++ + + + + G GA +++++
Sbjct: 530 ENGVALRCF----PGVVRSLDALGWEERQLALVKGLLAGNVFDWGAKAVSDVLESDPCFG 585
Query: 173 -----EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRG 227
KL PWLVD +WL RL GPPH A IF DNSGIDI+LG+ PF RELL RG
Sbjct: 586 FEEAKRKLQERPWLVDSYSEWLQRLK-GPPHKCALIFADNSGIDIILGVFPFVRELLLRG 644
Query: 228 TKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSR 287
T+VIL NS PALNDVT+SE +++ + A + ++ +AL RL+ ++T + PCLDLSR
Sbjct: 645 TEVILACNSGPALNDVTHSESLIVAERIAGMDPVVHSALREERLLLVQTGSSSPCLDLSR 704
Query: 288 LGRDLATEL--SSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMFSV 345
L + LA + DL+V+EGMGR VHTN +A CESLKLAVIKN WLA+RLGG++FSV
Sbjct: 705 LDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKLAVIKNAWLAERLGGRLFSV 764
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGL 177
L F+KFE YI CLDFI +L+N+ + K I+ATGGGAYK+ +LI+EKL L
Sbjct: 91 LHFIKFENTYIEACLDFIKDHLVNT----ETKVIQATGGGAYKFKDLIEEKLRL 140
>sp|Q4R4U1|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2
Length = 773
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/360 (42%), Positives = 205/360 (56%), Gaps = 64/360 (17%)
Query: 10 QEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERAT 69
++YWL CFEE+++ +RA+ASQ P S ERA
Sbjct: 445 RKYWLTCFEEALDGVVKRAVASQ--------------------------PDSVDAAERAE 478
Query: 70 KFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKF 129
KFR+KY ++L L+Q P AYG LTVRSLLDT EH L EF+FPDPY + +
Sbjct: 479 KFRQKYWNKLQTLRQQPF---------AYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQR 529
Query: 130 ETKYIADCLDFIAANLINSIECM--DGKSIKATGG---------GAYKYANLIQ------ 172
E C ++ S++ + + + + G GA +++++
Sbjct: 530 ENGVALRCF----PGVVRSLDTLGWEERQLALVKGLLAGNVFDWGAKAVSDVLESDPYFG 585
Query: 173 -----EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRG 227
KL PWLVD +WL RL GPPH A IF DNSGIDI+LG+ PF RELL RG
Sbjct: 586 FEEAKRKLQERPWLVDSYSEWLQRLK-GPPHKCALIFADNSGIDIILGVFPFVRELLLRG 644
Query: 228 TKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSR 287
T+VIL NS PALNDVT+ E +++ + A + ++ +AL RL+ ++T + PCLDLSR
Sbjct: 645 TEVILACNSGPALNDVTHGESLIVAERIAGMDPVVHSALREERLLLVQTGSSSPCLDLSR 704
Query: 288 LGRDLATEL--SSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMFSV 345
L + LA + DL+V+EGMGR VHTN +A CESLKLAVIKN WLA+RLGG++FSV
Sbjct: 705 LDKGLAALVRERGADLVVIEGMGRAVHTNYHAALCCESLKLAVIKNAWLAERLGGRLFSV 764
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGL 177
L FVKFE YI CLDFI +L+N+ + K I+ATGGGAYK+ +LI+EKL L
Sbjct: 91 LHFVKFENTYIEACLDFIKDHLVNT----ETKVIQATGGGAYKFKDLIEEKLRL 140
>sp|Q80YV4|PANK4_MOUSE Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2
Length = 820
Score = 248 bits (634), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 156/404 (38%), Positives = 201/404 (49%), Gaps = 105/404 (25%)
Query: 10 QEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERAT 69
++YWL CFEE+++ +RA+ASQ P S ERA
Sbjct: 445 RQYWLTCFEEALDGVVKRAVASQ--------------------------PESMDAVERAE 478
Query: 70 KFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKF 129
KFR+KY +L L+ P AYG LTVRSLLDT EH L EF+FPDPY + +
Sbjct: 479 KFRQKYWGKLQTLRHQPF---------AYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQK 529
Query: 130 ETKYIADCLDFIAANLINSIECMDGKSIKATG--------GGAYKYANLIQ--------- 172
E C + +L +S+ + + G GA +++++
Sbjct: 530 ENGLALKCFQSVTRSL-DSLGWEERQLALVKGLLAGNVFDWGAKAVSDVLESDPQFGFEE 588
Query: 173 --EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKV 230
KL PWLVD WL RL GPPH A IF DNSGIDI+LG+ PF RELL RGT+V
Sbjct: 589 AKRKLQERPWLVDSYTKWLQRLK-GPPHKCALIFADNSGIDIILGVFPFVRELLFRGTEV 647
Query: 231 ILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDL----- 285
IL NS PALNDVTYSE +++ + A + II AL RL+ ++T + PCLDL
Sbjct: 648 ILACNSGPALNDVTYSESLIVAERIAAMDPIICTALREDRLLLVQTGSSSPCLDLSLCTS 707
Query: 286 ------------------------------------------SRLGRDLATEL--SSIDL 301
SRL + LA + DL
Sbjct: 708 RTTTCMVLPFAMWVLWTKLKSLVEKCLSPLSILLACSVLSAKSRLDKGLAVLVRERGADL 767
Query: 302 IVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMFSV 345
+V+EGMGR +HTN +A CESLKLAV+KN WLA+RLGGQ+FSV
Sbjct: 768 VVIEGMGRAIHTNYHALLRCESLKLAVVKNAWLAERLGGQLFSV 811
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 27/102 (26%)
Query: 99 GNLTVRSLLDTIEHYL---KEFDFPD---------PY-----------LEFVKFETKYIA 135
G+LT + T++H + + FD P PY L F+KFE Y+
Sbjct: 43 GSLTKLAYYSTVQHKVAKVRSFDHPGKDVEQDHEPPYEISVQEEITARLHFIKFENTYME 102
Query: 136 DCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGL 177
CLDFI +L+N+ + K I+ATGGGAYK+ +LI+EKL L
Sbjct: 103 ACLDFIRDHLVNT----ETKVIQATGGGAYKFKDLIEEKLRL 140
>sp|Q8L5Y9|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1
SV=2
Length = 901
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/377 (33%), Positives = 182/377 (48%), Gaps = 81/377 (21%)
Query: 7 QAKQEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEE 66
Q ++EYWL E + + A+AS+ G E A +
Sbjct: 544 QGEREYWLKVLSEHLPDLVDTAVASE----GGTEDAKR---------------------- 577
Query: 67 RATKFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEF 126
R F + + L L + P +AYG L + +LL+ E L+EF F D Y
Sbjct: 578 RGDAFARAFSAHLARLMEEP---------AAYGKLGLANLLELREECLREFQFVDAYRSI 628
Query: 127 VKFETK----YIADCLDFI-----AANLINSIECMDGKSIKATGGGA----YKYANLIQ- 172
+ E + + D L+ + A L+ IE + +I G A Y +I+
Sbjct: 629 KQRENEASLAVLPDLLEELDSMSEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEI 688
Query: 173 -----EKLGLSPWLVDDLDDWLDR-LNNGPP----HSKAAIFVDNSGIDIVLGILPFARE 222
K+ PW VDD D + +R L +G H +A +FVDNSG D++LG+LP ARE
Sbjct: 689 YRMSRNKM-QRPWRVDDFDAFKERMLGSGGKQPHRHKRALLFVDNSGADVILGMLPLARE 747
Query: 223 LLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANAL---------------- 266
LRRGT+V+L ANS PALNDVT EL ++ AA C I+ A
Sbjct: 748 FLRRGTEVVLVANSLPALNDVTAMELPDIVAGAAKHCDILRRAAEMGGLLVDAMVNPGDG 807
Query: 267 -----SSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTC 321
+S L+ +E PC+DL ++ +LA DL+VLEGMGR +HTN NA+F C
Sbjct: 808 SKKDSTSAPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVVLEGMGRALHTNFNAQFQC 867
Query: 322 ESLKLAVIKNRWLAQRL 338
E+LKLA++KN+ LA++L
Sbjct: 868 EALKLAMVKNQRLAEKL 884
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 102 TVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKS----- 156
T++ L L+ + L FVKFET I +CLDFI + ++ + S
Sbjct: 110 TIKERLGITNGNLRSYPVLGGRLHFVKFETHKINECLDFIHSKQLHRRDPYPWSSKTLPL 169
Query: 157 ----IKATGGGAYKYANLIQEKLGLS 178
IK TGGGA+K+A+L +E+LG+S
Sbjct: 170 GTGVIKVTGGGAFKFADLFKERLGVS 195
>sp|Q949P3|Y2734_ARATH Uncharacterized protein At2g17340 OS=Arabidopsis thaliana
GN=At2g17340 PE=1 SV=1
Length = 367
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 163/298 (54%), Gaps = 34/298 (11%)
Query: 67 RATKFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTI-EHYLKEFDFPDPYLE 125
RA KF E+Y L LK+ P ++G LL + E L+E F D + +
Sbjct: 72 RAEKFAERYAGILEDLKKDP---------ESHGGPPDGILLCRLREQVLRELGFRDIFKK 122
Query: 126 FVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYK-------YANLIQ--EKLG 176
VK E A L +L ++IE DGK ++ G + A L + + G
Sbjct: 123 -VKDEENAKAISLFPQVVSLSDAIED-DGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDG 180
Query: 177 LS-----------PWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLR 225
+S PW++DDL+++ + N KA IFVDNSG DI+LGILPFARELLR
Sbjct: 181 MSFLASCQNLVPRPWVIDDLENFQAKWINKS-WKKAVIFVDNSGADIILGILPFARELLR 239
Query: 226 RGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDL 285
RG +V+L AN P++ND+T +EL +L Q + +S L+A + P +DL
Sbjct: 240 RGAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIA-NSGNDLPVIDL 298
Query: 286 SRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMF 343
SR+ ++LA S DL+++EGMGR + TNL A+F C+SLK+ ++K+ +A+ LGG+++
Sbjct: 299 SRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLY 356
>sp|O80765|PANK1_ARATH Pantothenate kinase 1 OS=Arabidopsis thaliana GN=COAA PE=2 SV=2
Length = 383
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 7/61 (11%)
Query: 124 LEFVKFETKYIADCLDFIAANLIN-------SIECMDGKSIKATGGGAYKYANLIQEKLG 176
L F KFET+ I DCL+FI N+++ + E D +KATGGGA+K+A+L +EKLG
Sbjct: 44 LCFAKFETRKIDDCLEFIRFNILHHSGVQQPNGEGHDKLYVKATGGGAFKFADLFKEKLG 103
Query: 177 L 177
+
Sbjct: 104 I 104
>sp|O74962|PANK_SCHPO Pantothenate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC4B4.01c PE=1 SV=1
Length = 403
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIK--ATGGGAYKYANLIQEKLGLSPWL 181
L F+ FET I DC+ F+A + N ++ + K I ATGGGAYK+ + + ++L +
Sbjct: 101 LSFMIFETAKIEDCIQFMANLIDNHVKNCNKKKITLIATGGGAYKFYDRMSKQLDIKVIR 160
Query: 182 VDDLDDWLDRLN 193
D+++ + LN
Sbjct: 161 EDEMECLIMGLN 172
>sp|Q9UFD9|RIM3A_HUMAN RIMS-binding protein 3A OS=Homo sapiens GN=RIMBP3 PE=1 SV=4
Length = 1639
Score = 33.9 bits (76), Expect = 1.9, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 22/121 (18%)
Query: 236 SAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCL------DLSRLG 289
SAP D EL RQ CH++ ++SG + T + GPC DL RL
Sbjct: 477 SAPLAKDKQIEEL----RQE---CHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQ 529
Query: 290 RDLATELSSI--DLIVLEGMGRTVHTNLNAKFTCESLKLAVI-------KNRWLAQRLGG 340
R+ E+ + L++ +G G TCE ++ ++ + R Q LG
Sbjct: 530 RESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGA 589
Query: 341 Q 341
Q
Sbjct: 590 Q 590
>sp|Q6G1H5|AROK_BARQU Shikimate kinase OS=Bartonella quintana (strain Toulouse) GN=aroK
PE=3 SV=1
Length = 210
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 159 ATGGGAYKYANLIQ--EKLGLSPWLVDDLDDWLDRLNNGP 196
ATGGGAY ++ Q K G+S WL DLD + R++ P
Sbjct: 99 ATGGGAYINEDIRQVINKNGISIWLKADLDILMKRVSRHP 138
>sp|A6NJZ7|RIM3C_HUMAN RIMS-binding protein 3C OS=Homo sapiens GN=RIMBP3C PE=1 SV=3
Length = 1639
Score = 33.9 bits (76), Expect = 2.0, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 236 SAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCL------DLSRLG 289
SAP D EL RQ CH++ ++SG + T + GPC DL RL
Sbjct: 477 SAPLAKDKQIEEL----RQE---CHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQ 529
Query: 290 RDLATELSSI--DLIVLEGMGRTVHTNLNAKFTCESLKLAVIK-NRWLAQR 337
R+ E+ + L++ +G G TCE ++ ++ R L QR
Sbjct: 530 RESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQR 580
>sp|A6NNM3|RIM3B_HUMAN RIMS-binding protein 3B OS=Homo sapiens GN=RIMBP3B PE=2 SV=3
Length = 1639
Score = 33.9 bits (76), Expect = 2.0, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 236 SAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCL------DLSRLG 289
SAP D EL RQ CH++ ++SG + T + GPC DL RL
Sbjct: 477 SAPLAKDKQIEEL----RQE---CHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQ 529
Query: 290 RDLATELSSI--DLIVLEGMGRTVHTNLNAKFTCESLKLAVIK-NRWLAQR 337
R+ E+ + L++ +G G TCE ++ ++ R L QR
Sbjct: 530 RESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQR 580
>sp|Q8FY59|AROK_BRUSU Shikimate kinase OS=Brucella suis biovar 1 (strain 1330) GN=aroK
PE=3 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANL---IQEKLGLSPW 180
+EF E + I LD DG + ATGGGAY A I E G+S W
Sbjct: 76 VEFRDLERRVILRLLD-------------DGPMVLATGGGAYMNAETRAAIAEA-GISIW 121
Query: 181 LVDDLDDWLDRLN 193
+ DLD ++R++
Sbjct: 122 INADLDVLMERVS 134
>sp|B0CJD1|AROK_BRUSI Shikimate kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
GN=aroK PE=3 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANL---IQEKLGLSPW 180
+EF E + I LD DG + ATGGGAY A I E G+S W
Sbjct: 76 VEFRDLERRVILRLLD-------------DGPMVLATGGGAYMNAETRAAIAEA-GISIW 121
Query: 181 LVDDLDDWLDRLN 193
+ DLD ++R++
Sbjct: 122 INADLDVLMERVS 134
>sp|C0RFS0|AROK_BRUMB Shikimate kinase OS=Brucella melitensis biotype 2 (strain ATCC
23457) GN=aroK PE=3 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANL---IQEKLGLSPW 180
+EF E + I LD DG + ATGGGAY A I E G+S W
Sbjct: 76 VEFRDLERRVILRLLD-------------DGPMVLATGGGAYMNAETRAAIAEA-GISIW 121
Query: 181 LVDDLDDWLDRLN 193
+ DLD ++R++
Sbjct: 122 INADLDVLMERVS 134
>sp|A9M9B4|AROK_BRUC2 Shikimate kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
GN=aroK PE=3 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANL---IQEKLGLSPW 180
+EF E + I LD DG + ATGGGAY A I E G+S W
Sbjct: 76 VEFRDLERRVILRLLD-------------DGPMVLATGGGAYMNAETRAAIAEA-GISIW 121
Query: 181 LVDDLDDWLDRLN 193
+ DLD ++R++
Sbjct: 122 INADLDVLMERVS 134
>sp|Q57AM8|AROK_BRUAB Shikimate kinase OS=Brucella abortus biovar 1 (strain 9-941)
GN=aroK PE=3 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANL---IQEKLGLSPW 180
+EF E + I LD DG + ATGGGAY A I E G+S W
Sbjct: 76 VEFRDLERRVILRLLD-------------DGPMVLATGGGAYMNAETRAAIAEA-GISIW 121
Query: 181 LVDDLDDWLDRLN 193
+ DLD ++R++
Sbjct: 122 INADLDVLMERVS 134
>sp|Q2YR42|AROK_BRUA2 Shikimate kinase OS=Brucella abortus (strain 2308) GN=aroK PE=3
SV=1
Length = 200
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANL---IQEKLGLSPW 180
+EF E + I LD DG + ATGGGAY A I E G+S W
Sbjct: 76 VEFRDLERRVILRLLD-------------DGPMVLATGGGAYMNAETRAAIAEA-GISIW 121
Query: 181 LVDDLDDWLDRLN 193
+ DLD ++R++
Sbjct: 122 INADLDVLMERVS 134
>sp|B2S8S9|AROK_BRUA1 Shikimate kinase OS=Brucella abortus (strain S19) GN=aroK PE=3 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANL---IQEKLGLSPW 180
+EF E + I LD DG + ATGGGAY A I E G+S W
Sbjct: 76 VEFRDLERRVILRLLD-------------DGPMVLATGGGAYMNAETRAAIAEA-GISIW 121
Query: 181 LVDDLDDWLDRLN 193
+ DLD ++R++
Sbjct: 122 INADLDVLMERVS 134
>sp|P95949|HELX_SULSO Uncharacterized ATP-dependent helicase SSO0112 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0112 PE=3 SV=1
Length = 875
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 222 ELLRRGT-KVILCANSAPALNDVTYSELVVLLRQAATVCHIIA---------NALSSGRL 271
E L++G KV++ + S D+ Y +LV+LL +V ++ ++S GR+
Sbjct: 326 EKLKKGILKVVVSSTSLELGIDIGYIDLVILLSSPKSVSRLLQRIGRAGHHIRSISKGRV 385
Query: 272 VAMETAQAGPCLDLSRLGRD 291
+ ++ C L++L RD
Sbjct: 386 IVVDRDDLVECSVLAKLARD 405
>sp|Q05118|PO23_POPJA Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R2 (Fragment) OS=Popillia japonica PE=4 SV=1
Length = 606
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 152 MDGKSIKATGG-GAYKYANLIQEKLGLSPWLVDDLDDWLDRLNNGP--PHSK-------- 200
+DG+ IK GG +KY L G++ V +L WL L P P+ K
Sbjct: 187 IDGRYIKPLGGINTFKYLGLTFSSTGVAKPTVYNLTRWLRNLEKAPLKPNQKFYILKTHL 246
Query: 201 -AAIFVDNSGIDIVLGILPFARELLRRGTKVILCAN 235
+F + GIL L RR T+ I N
Sbjct: 247 LPRLFYGLQSPGVTAGILQECDRLARRTTRKIFHLN 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,225,537
Number of Sequences: 539616
Number of extensions: 5054273
Number of successful extensions: 12807
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 12748
Number of HSP's gapped (non-prelim): 49
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)