Query psy11662
Match_columns 346
No_of_seqs 190 out of 454
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 15:42:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4584|consensus 100.0 6.5E-89 1.4E-93 643.8 25.6 300 7-346 24-347 (348)
2 PLN02902 pantothenate kinase 100.0 3.4E-83 7.4E-88 674.8 28.3 301 7-346 519-868 (876)
3 COG1578 Uncharacterized conser 100.0 9.5E-42 2.1E-46 320.0 17.9 244 64-346 25-281 (285)
4 PF01937 DUF89: Protein of unk 100.0 1.2E-36 2.6E-41 299.9 17.1 299 16-344 1-353 (355)
5 KOG2201|consensus 99.9 8.6E-23 1.9E-27 196.9 3.0 204 113-338 58-284 (371)
6 PLN02920 pantothenate kinase 1 99.7 2.3E-18 5E-23 171.0 6.8 183 120-312 56-260 (398)
7 PLN02902 pantothenate kinase 99.7 6.5E-18 1.4E-22 180.3 6.3 182 119-312 102-309 (876)
8 COG5146 PanK Pantothenate kina 99.7 4.8E-17 1E-21 152.1 6.7 173 121-298 39-233 (342)
9 PF03630 Fumble: Fumble ; Int 99.7 5.4E-18 1.2E-22 167.0 -2.0 185 118-313 47-251 (341)
10 PTZ00297 pantothenate kinase; 99.6 4.3E-16 9.3E-21 176.3 5.7 181 122-311 1106-1313(1452)
11 TIGR00555 panK_eukar pantothen 99.4 2.3E-13 5E-18 130.9 4.1 165 121-311 20-193 (279)
12 PRK13317 pantothenate kinase; 98.0 3.2E-06 6.9E-11 81.6 2.5 115 157-289 51-174 (277)
13 KOG3870|consensus 97.6 0.00031 6.7E-09 70.6 9.8 128 177-308 215-361 (434)
14 COG4100 Cystathionine beta-lya 51.7 11 0.00024 37.7 2.4 27 180-208 183-209 (416)
15 PF03205 MobB: Molybdopterin g 50.8 81 0.0017 27.2 7.5 44 202-247 4-48 (140)
16 PRK14556 pyrH uridylate kinase 48.5 1.8E+02 0.0038 28.0 10.0 37 222-258 49-96 (249)
17 KOG0020|consensus 45.5 90 0.0019 33.4 7.9 53 177-233 513-565 (785)
18 cd03116 MobB Molybdenum is an 42.1 69 0.0015 28.3 5.8 36 201-238 3-40 (159)
19 PRK00536 speE spermidine synth 41.2 1.5E+02 0.0033 28.7 8.4 60 195-274 70-129 (262)
20 COG0537 Hit Diadenosine tetrap 39.8 68 0.0015 27.7 5.3 64 212-280 26-90 (138)
21 KOG3349|consensus 38.6 99 0.0022 28.1 6.1 30 283-312 65-95 (170)
22 COG0528 PyrH Uridylate kinase 36.9 2.8E+02 0.0061 26.7 9.3 87 221-309 38-136 (238)
23 TIGR00347 bioD dethiobiotin sy 36.3 1.2E+02 0.0027 25.9 6.5 25 285-309 86-110 (166)
24 PF06745 KaiC: KaiC; InterPro 33.9 1.4E+02 0.0031 27.0 6.8 114 181-308 4-125 (226)
25 PRK00784 cobyric acid synthase 33.8 74 0.0016 33.2 5.4 33 283-315 110-142 (488)
26 PF01230 HIT: HIT domain; Int 33.3 1.1E+02 0.0025 24.0 5.3 75 200-281 7-82 (98)
27 PRK12374 putative dithiobiotin 33.2 76 0.0016 29.3 4.9 93 207-309 13-116 (231)
28 PRK14494 putative molybdopteri 32.7 1.9E+02 0.0041 27.4 7.5 35 201-237 3-39 (229)
29 TIGR00176 mobB molybdopterin-g 32.5 1.6E+02 0.0034 25.8 6.5 31 206-238 8-38 (155)
30 PF06838 Met_gamma_lyase: Meth 32.0 11 0.00024 38.5 -1.0 121 97-230 50-228 (403)
31 COG0796 MurI Glutamate racemas 32.0 46 0.00099 32.5 3.2 43 197-239 29-80 (269)
32 PRK05632 phosphate acetyltrans 30.5 96 0.0021 33.9 5.8 79 200-308 4-86 (684)
33 PF13732 DUF4162: Domain of un 30.0 48 0.001 25.3 2.6 26 219-245 56-81 (84)
34 PRK06136 uroporphyrin-III C-me 30.0 51 0.0011 30.6 3.1 33 269-305 3-35 (249)
35 PF00590 TP_methylase: Tetrapy 29.2 76 0.0016 28.2 4.0 32 271-306 2-33 (210)
36 PF03102 NeuB: NeuB family; I 28.9 2E+02 0.0043 27.4 7.0 75 214-303 100-175 (241)
37 TIGR00285 DNA-binding protein 28.8 49 0.0011 27.0 2.4 20 293-312 19-39 (87)
38 KOG1800|consensus 28.2 71 0.0015 33.1 4.0 76 241-333 98-203 (468)
39 PRK13760 putative RNA-associat 27.5 3.5E+02 0.0075 25.9 8.2 70 52-131 77-147 (231)
40 PRK14994 SAM-dependent 16S rib 26.9 76 0.0017 31.0 3.9 35 269-307 12-46 (287)
41 PRK14495 putative molybdopteri 26.3 1.5E+02 0.0032 31.2 5.9 37 201-239 3-41 (452)
42 PF13460 NAD_binding_10: NADH( 25.9 1.3E+02 0.0029 25.7 4.9 26 215-241 11-36 (183)
43 PHA02053 hypothetical protein 24.9 60 0.0013 27.2 2.3 36 272-309 55-90 (115)
44 COG1500 Predicted exosome subu 24.9 2.6E+02 0.0056 26.8 6.8 78 51-138 76-154 (234)
45 PF08328 ASL_C: Adenylosuccina 24.7 62 0.0014 27.7 2.4 29 105-133 54-82 (115)
46 COG1703 ArgK Putative periplas 24.6 2.4E+02 0.0052 28.3 6.8 74 219-308 71-153 (323)
47 TIGR00291 RNA_SBDS rRNA metabo 24.3 2.9E+02 0.0062 26.4 7.1 70 53-132 78-148 (231)
48 PF11684 DUF3280: Protein of u 24.0 2.7E+02 0.0058 24.5 6.4 66 236-306 16-88 (140)
49 PRK15473 cbiF cobalt-precorrin 23.9 87 0.0019 29.6 3.6 34 269-306 8-41 (257)
50 TIGR01469 cobA_cysG_Cterm urop 23.8 79 0.0017 29.0 3.2 31 271-305 2-32 (236)
51 PRK05765 precorrin-3B C17-meth 23.5 83 0.0018 29.6 3.3 32 270-305 3-34 (246)
52 PLN02625 uroporphyrin-III C-me 23.1 83 0.0018 29.9 3.3 36 268-307 14-49 (263)
53 TIGR01467 cobI_cbiL precorrin- 22.9 73 0.0016 29.3 2.8 34 270-307 2-35 (230)
54 PF13380 CoA_binding_2: CoA bi 22.5 2E+02 0.0042 23.9 5.1 77 219-304 19-106 (116)
55 PRK04015 DNA/RNA-binding prote 22.4 81 0.0018 25.9 2.6 27 286-312 16-42 (91)
56 PRK05787 cobalt-precorrin-6Y C 22.1 92 0.002 28.0 3.3 31 271-305 2-32 (210)
57 TIGR03569 NeuB_NnaB N-acetylne 21.9 4.1E+02 0.0089 26.5 8.0 73 216-303 122-197 (329)
58 CHL00073 chlN photochlorophyll 21.8 4.8E+02 0.011 27.3 8.8 47 182-240 302-348 (457)
59 PF12328 Rpp20: Rpp20 subunit 21.8 35 0.00076 30.1 0.4 14 299-312 61-74 (144)
60 COG1010 CobJ Precorrin-3B meth 21.4 1.1E+02 0.0025 29.4 3.7 31 269-303 3-33 (249)
61 PF03033 Glyco_transf_28: Glyc 21.2 87 0.0019 25.7 2.7 26 208-234 8-33 (139)
62 PF13528 Glyco_trans_1_3: Glyc 21.0 1.9E+02 0.0042 27.2 5.3 27 281-307 232-259 (318)
63 PRK14489 putative bifunctional 20.8 3.1E+02 0.0068 27.4 7.0 38 201-240 207-246 (366)
64 PRK05991 precorrin-3B C17-meth 20.6 1E+02 0.0023 28.9 3.4 32 269-304 3-34 (250)
65 PF07015 VirC1: VirC1 protein; 20.6 3.5E+02 0.0075 25.9 6.8 45 257-310 71-117 (231)
66 PF05797 Rep_4: Yeast trans-ac 20.1 2.7E+02 0.0058 28.2 6.1 57 74-143 253-309 (339)
No 1
>KOG4584|consensus
Probab=100.00 E-value=6.5e-89 Score=643.84 Aligned_cols=300 Identities=47% Similarity=0.806 Sum_probs=286.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCC
Q psy11662 7 QAKQEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERATKFREKYVSRLHHLKQHP 86 (346)
Q Consensus 7 ~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p 86 (346)
..++.|||+||+++||+|+++|++||++++| |++||++|+++|.++|++++++|
T Consensus 24 ~~a~~~Wi~~f~~~ip~f~krA~asq~~~~D--------------------------A~~RAe~F~~~y~~~Le~lk~~P 77 (348)
T KOG4584|consen 24 TPAEIYWINVFSNSIPSFKKRAEASQENVPD--------------------------APARAEKFAQRYAGILEDLKKDP 77 (348)
T ss_pred chhhhHHHHHHHHHhHHHHHHHhhcCCCCCc--------------------------hhHHHHHHHHHHHHHHHHHHhCh
Confidence 4689999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCcCCCCCch-hhhHHHHHHHHhhhcCCCCcchHHhhHhhHHHHHHHHHHHHhHhhhhccCCchh--hhhh---
Q psy11662 87 LLFCFDYDFSAYGNLT-VRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKS--IKAT--- 160 (346)
Q Consensus 87 ~~~~~~~~~~~~g~~~-~r~ll~~re~~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~~~~--~~at--- 160 (346)
. +||.++ .+.||++||+|||++||+|||+++|+.||+.|++++ |.+++++|++.|+. +.++
T Consensus 78 ~---------a~G~~~~g~~Ll~lRE~~LrE~gF~Diy~kvK~~ENa~Aia~f----P~vv~~lDal~dE~~Rle~LvrG 144 (348)
T KOG4584|consen 78 E---------AYGGPPLGINLLRLREQILRELGFRDIYKKVKDEENAKAIALF----PQVVRLLDALEDEGTRLENLVRG 144 (348)
T ss_pred H---------hcCCCcchHHHHHHHHHHHHHhCCccHHHHHHHhhhhhHHHHh----HHHHHHHhhhcchhHHHHHHHHH
Confidence 9 999643 355999999999999999999999999999999999 88888899998652 3333
Q ss_pred -------cCChhhhHHHHH-----------HHhcCCCCccccHHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHH
Q psy11662 161 -------GGGAYKYANLIQ-----------EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARE 222 (346)
Q Consensus 161 -------D~GA~~~~dl~~-----------~~l~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflre 222 (346)
||||..+.++++ +++..|||.+||+|+|.++|+ ++||||+++|+||||.|||+|++||+|+
T Consensus 145 ilAGNiFDwGa~~~~~il~~~~~f~f~~a~~~l~~RPWl~D~ld~f~~r~~-~~p~K~~lif~DNSG~DvILGilPf~Re 223 (348)
T KOG4584|consen 145 ILAGNIFDWGAKAVVKILESASVFGFLAALQNLESRPWLVDDLDSFLARLK-GKPHKCALIFVDNSGFDVILGILPFARE 223 (348)
T ss_pred HHhcchhhhHHHHHHHHHhccccchHHHHHhhhhcCCeeeccHHHHHHHhc-CCCcceEEEEecCCCcceeeeecHHHHH
Confidence 999999988875 778899999999999999999 8899999999999999999999999999
Q ss_pred HHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCccccCHHHHHHHhcCCEE
Q psy11662 223 LLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLI 302 (346)
Q Consensus 223 Ll~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLV 302 (346)
|+++|++|++++|++|+|||+|+.|+..++.+++..|+.+..|++.+++.++.||+++||+|++++|+|++.+.++||||
T Consensus 224 llr~gt~vil~ans~palNdvt~~el~~l~~~~~~~~~~l~~~~~~~~ll~~~~G~~~pciDlrrvsqeLa~l~~daDLV 303 (348)
T KOG4584|consen 224 LLRRGTEVILCANSSPALNDVTYSELKELAAELANDCNVLLKAIDTGQLLVVQNGQDSPCIDLRRVSQELAYLSSDADLV 303 (348)
T ss_pred HHhCCCeEEEEecCcchhccccHHHHHHHHHhhccCChHHHHHhhhcceEEeecCCCCceeeHHhhhHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCccccccccccccccchhhhhcCHHHHHHhCCccCcCC
Q psy11662 303 VLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMFSVA 346 (346)
Q Consensus 303 IskGMGral~tN~~a~f~~~~lkLa~iK~~~vA~~Lg~~~~~~v 346 (346)
|+|||||++|||+|++|+|+|||+|||||.|||++|||+|||||
T Consensus 304 ViEGMGRalhTN~~aqf~CeSLK~avik~~wlA~~LGgrlf~vV 347 (348)
T KOG4584|consen 304 VIEGMGRALHTNLNAQFKCESLKLAVIKNLWLAERLGGRLFSVV 347 (348)
T ss_pred EEeccchhhhhhhhhhhcccHhHHHHHhhHHHHHHhCCchheec
Confidence 99999999999999999999999999999999999999999997
No 2
>PLN02902 pantothenate kinase
Probab=100.00 E-value=3.4e-83 Score=674.81 Aligned_cols=301 Identities=39% Similarity=0.673 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCC
Q psy11662 7 QAKQEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERATKFREKYVSRLHHLKQHP 86 (346)
Q Consensus 7 ~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p 86 (346)
+++|+|||+||+++|++|+++|++|||+++| |++||++|+++|.++|++|+++|
T Consensus 519 ~~~r~yW~~~f~~~i~~~~~~A~~sq~~~~d--------------------------a~~ra~~F~~~y~~~L~~l~~~p 572 (876)
T PLN02902 519 QSEREYWFKVLSEHLPDLVDKAVASEGGTDD--------------------------AKRRGDAFARAFSAHLARLMEEP 572 (876)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--------------------------HHHHHHHHHHHHHHHHHHHHhCc
Confidence 5789999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCcCCCCCchhhhHHHHHHHHhhhcCCCCcchHHhhHhhHHHHHHHHHHHHhHhhhhccCC--ch----hhhh-
Q psy11662 87 LLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMD--GK----SIKA- 159 (346)
Q Consensus 87 ~~~~~~~~~~~~g~~~~r~ll~~re~~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~--~~----~~~a- 159 (346)
. +||.+++++||++||+|||++||+|||+++|+++|+.|++++|.++.. +|.+. ++ +..+
T Consensus 573 ~---------a~G~~~~~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~----ld~~~~edrL~~aVk~ai 639 (876)
T PLN02902 573 A---------AYGKLGLANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAE----LDSMTEETRLLTLIEGVL 639 (876)
T ss_pred c---------ccCCchHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHH----HhcCCcchHHHHHHHHHH
Confidence 9 999999999999999999999999999999999999999999665554 44333 22 1122
Q ss_pred ---h-cCChhhhHHHH--------H---HHhcCCCCccccHHHHHHHhcC-----CCCCceEEEEecCCCcceecCchHH
Q psy11662 160 ---T-GGGAYKYANLI--------Q---EKLGLSPWLVDDLDDWLDRLNN-----GPPHSKAAIFVDNSGIDIVLGILPF 219 (346)
Q Consensus 160 ---t-D~GA~~~~dl~--------~---~~l~~r~~~vDd~d~l~~~l~~-----~~~~k~vl~f~DNsGeDIV~d~lPf 219 (346)
+ ||||+...+++ + +++..+||.+||++.|+++|+. .+||++++||+||||+|||||++||
T Consensus 640 AGNifD~Ga~~~v~l~~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpL 719 (876)
T PLN02902 640 AANIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPL 719 (876)
T ss_pred HHhhhhhhhhhhhhhccccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHH
Confidence 2 99997555442 1 5667899999999999999972 1579999999999998899999999
Q ss_pred HHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcC---------------------CceEEEecCC
Q psy11662 220 ARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSS---------------------GRLVAMETAQ 278 (346)
Q Consensus 220 lreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~---------------------~~l~vv~sG~ 278 (346)
+|||+++|++|+++||+.|+|||+|++||..++..++..|+.+..|... ..+.|++||+
T Consensus 720 iRELl~rgtkV~lavng~PiINDvT~eDl~~~~~~~a~~~~~l~~A~~aG~~~~~~~~~ld~~~~~~~~~~~l~VV~SG~ 799 (876)
T PLN02902 720 ARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGSKDDSTSVPLMVVENGC 799 (876)
T ss_pred HHHHHHcCCEEEEEECCCCchhhhhHHHHHHHHHHHhhcccHHHHHHHhcccccccccccccccccccccceEEEEcCCC
Confidence 9999999999999999999999999999999999999999998877531 3689999999
Q ss_pred CCcccCccccCHHHHHHHhcCCEEEEeccCCccccccccccccccchhhhhcCHHHHHHh-CCccCcCC
Q psy11662 279 AGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRL-GGQMFSVA 346 (346)
Q Consensus 279 ~~pg~dl~~~s~el~~~~~~aDLVIskGMGral~tN~~a~f~~~~lkLa~iK~~~vA~~L-g~~~~~~v 346 (346)
++||+||+++|+|+++++++|||||+|||||+|||||||+|+||+||||||||+|||++| ||+|||||
T Consensus 800 ~sPGidL~rvS~E~~~a~~~ADLIIaKGMGRaihTN~~a~f~cd~LklamiK~~~lA~~L~gG~~ydcV 868 (876)
T PLN02902 800 GSPCIDLRQVSSELAAAAKDADLIVLEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLINGNIYDCV 868 (876)
T ss_pred CCCCcChHHCCHHHHHHhcCCCEEEEcCcccccccccccceecchhHHhHhccHHHHhhccCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999 99999997
No 3
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.5e-42 Score=320.01 Aligned_cols=244 Identities=20% Similarity=0.191 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCccccccCCcCCCCCchhhhHHHHHHHHhhhcCCCCcchHHhhHhhHHHHHHHHHHH
Q psy11662 64 GEERATKFREKYVSRLHHLKQ-HPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIA 142 (346)
Q Consensus 64 ~~~ra~~f~~~~~~~L~~l~~-~p~~~~~~~~~~~~g~~~~r~ll~~re~~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr 142 (346)
-+++..+..+...+.|.+... +|. + ..+++ .+|+.+++.+|.+|||++.|++.|+.|++++|.+|
T Consensus 25 ded~~~~~~~~~~~lls~~y~~~~~---------~-a~~~t----~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~vr 90 (285)
T COG1578 25 DEDLRSRIMSEALKLLSEEYGESAV---------P-AIAGT----LIHREVYKILGNEDPYKEYKRRANEIALKVLPKVR 90 (285)
T ss_pred CHHHHHHHHHHHHHHHHhhhCcCCC---------c-HHHHH----HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888887743 344 1 22344 88999999999999999999999999999998888
Q ss_pred HhHhhhhccCCchhhhhh-----cCChhh--hHHHHH--HHhcCCCCccccHHHHHHHhcCCCCCceEEEEecCCCccee
Q psy11662 143 ANLINSIECMDGKSIKAT-----GGGAYK--YANLIQ--EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIV 213 (346)
Q Consensus 143 ~~v~~~ld~l~~~~~~at-----D~GA~~--~~dl~~--~~l~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV 213 (346)
++.....+.+..+...|+ |||+.. ..++.+ +++...++.+||++.|.+.++ .+ +|+|++||+|| |+
T Consensus 91 ~~~~~~~~dl~~Avk~ai~GN~iDfgv~G~~~~~lee~~~~~~~~~l~i~d~~k~~~~l~---~a-~VlYl~DNaGE-i~ 165 (285)
T COG1578 91 ENIEDTPEDLKTAVKLAIVGNVIDFGVLGFSPFDLEEEVEKLLDAELYIDDSPKLLELLK---NA-SVLYLTDNAGE-IV 165 (285)
T ss_pred hcccCChHHHHHHHHHHHHhcceeeccccCCHhHHHHHHHHhhcCcccccchHHHHHHhc---cC-cEEEEecCCcc-HH
Confidence 843322222223332222 999874 334444 667789999999999999999 35 99999999999 88
Q ss_pred cCchHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCccccCHHHH
Q psy11662 214 LGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRDLA 293 (346)
Q Consensus 214 ~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl~~~s~el~ 293 (346)
||++ +++.+.++|.+|+++|||+|||||+|++|+... +++++. .|++||++.||+.++.+|.||.
T Consensus 166 FD~v-lie~ik~~~~~vv~vVrg~PIlnDaT~EDak~~-----~i~~i~---------~vittG~~~vGi~l~d~s~Ef~ 230 (285)
T COG1578 166 FDKV-LIEVIKELGKKVVVVVRGGPILNDATMEDAKEA-----GIDEIA---------KVITTGSDIVGIWLEDVSEEFR 230 (285)
T ss_pred HHHH-HHHHHHhcCCceEEEEcCCceechhhHHHHHHc-----Ccchhh---------eeecCCCCcceeeHHhccHHHH
Confidence 9997 999999999999999999999999999999998 888655 8999999999999999999999
Q ss_pred HHHhcCCEEEEeccCCccccccccccc---cccchhhhhcCHHHHHHhCCccCcCC
Q psy11662 294 TELSSIDLIVLEGMGRTVHTNLNAKFT---CESLKLAVIKNRWLAQRLGGQMFSVA 346 (346)
Q Consensus 294 ~~~~~aDLVIskGMGral~tN~~a~f~---~~~lkLa~iK~~~vA~~Lg~~~~~~v 346 (346)
+++.+||+||+|||| ||+++.. -+-++|+..||+-||+.||++..+-|
T Consensus 231 ~~f~~adlIIaKG~g-----NfE~LsE~~~~piffLL~AKC~~VAr~lgV~~G~~V 281 (285)
T COG1578 231 EAFESADLIIAKGQG-----NFETLSEEEDKPIFFLLKAKCDPVARELGVPRGANV 281 (285)
T ss_pred HHhccCCEEEecCcc-----ccccccccCCCcEEeeecccCchHHHHhCCCCCCee
Confidence 999999999999999 7777764 34478999999999999999877643
No 4
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=100.00 E-value=1.2e-36 Score=299.90 Aligned_cols=299 Identities=22% Similarity=0.204 Sum_probs=212.9
Q ss_pred HHHhhHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCCccccc----
Q psy11662 16 CFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERATKFREKYVSRLHHLKQHPLLFCF---- 91 (346)
Q Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p~~~~~---- 91 (346)
|+++.+|.+.++++.+.....+ .+++..+++.+++.+.+.++..++.+--+
T Consensus 1 T~~~c~p~il~~~i~~~~~~~~-------------------------~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 55 (355)
T PF01937_consen 1 TFRECLPCILTQAIDSLRRAND-------------------------DAEEDIKEIIEELSKLRYELDTNKPLPPITDDG 55 (355)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCC-------------------------CHHHHHHHHHHHHHHHHHHHHHTTCGHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHHhhccc-------------------------cHHHHHHHHHHHHHHHHHHhhcCCCCCcccccc
Confidence 5677888888888865543222 04677888888888888888776551111
Q ss_pred ---cCCcCCCCCchhhhHHHHHHHHhhhcC------CCCcchHHhhHhhHHHHHHHHHHHHhHhhhhcc---CCchh---
Q psy11662 92 ---DYDFSAYGNLTVRSLLDTIEHYLKEFD------FPDPYLEFVKFETKYIADCLDFIAANLINSIEC---MDGKS--- 156 (346)
Q Consensus 92 ---~~~~~~~g~~~~r~ll~~re~~lr~~g------~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~---l~~~~--- 156 (346)
+-++.-+..+....-+.++|++++.+| ..|||..+|+.+|+.|++.++.+...+....++ +....
T Consensus 56 ~~~~~~~~w~~~pWL~~e~ylyr~i~~~~~~~~~~~~~DPf~~~K~~~~~~al~~~~~l~~~l~~~~~~~~~~~~~l~~a 135 (355)
T PF01937_consen 56 PDSEEGPTWFNAPWLFAECYLYRRILEIFGYSSYLKNYDPFAEQKQESNEIALKLIPELAERLESLPDPRERFREALKLA 135 (355)
T ss_dssp HHHSTT-BTTBSBHHHHHHHHHHHHHHHHTHSTTTTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 011112223334457899999999999 999999999999999999997776664433333 11111
Q ss_pred -hhhh-cCChhh-----hHHHHH--HHhcCCCCccccHHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHHHHh--
Q psy11662 157 -IKAT-GGGAYK-----YANLIQ--EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLR-- 225 (346)
Q Consensus 157 -~~at-D~GA~~-----~~dl~~--~~l~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflreLl~-- 225 (346)
+++. |+|+.. ..+... .+...++|.+||++.+.+.|. ..++++|+|++||||.++|+|++ |+++|++
T Consensus 136 l~GN~~Dls~~~~~~~~~~~~~~~~~~~~~~~~l~dd~~~~~~~l~-~~~~~~v~~v~DNaG~Elv~D~l-l~~~L~~~~ 213 (355)
T PF01937_consen 136 LWGNIIDLSLSPGHEVGEFDQEEEIEKALEKPILVDDSDEFWEKLE-NKKAKRVDIVLDNAGFELVFDLL-LAEFLLESG 213 (355)
T ss_dssp HHHCG--CCCHTSHHCHHHHHHHHHHHHHHSTESEE-HHHHHHHHC-TCHTSEEEEE--BTTHHHHHHHH-HHHHHHHTC
T ss_pred HHhcCcccCccccchhcccchHHHHHHhhhcCCccccHHHHHHHhh-ccCCCEEEEEEcCCCcHHHhhHH-HHHHHHHhC
Confidence 2222 999866 111111 444578999999999999994 34789999999999944999998 9999999
Q ss_pred CCCeEEEEEeccc-ccchhhHHHHHHHHHHHhhHHH--------HHHHhhcCCceEEEecCCC--CcccCccccCHHHHH
Q psy11662 226 RGTKVILCANSAP-ALNDVTYSELVVLLRQAATVCH--------IIANALSSGRLVAMETAQA--GPCLDLSRLGRDLAT 294 (346)
Q Consensus 226 ~Gs~V~l~v~s~P-~LNDvT~~eL~~llt~~~~~d~--------~l~~A~~~~~l~vv~sG~~--~pg~dl~~~s~el~~ 294 (346)
+|++|+++||+.| ++||+|++|+..+|..+.+.+. .++..+.. ..++.+|++ +||++++++|+++.+
T Consensus 214 ~~~~V~~~vK~~P~~vnDvT~~D~~~~l~~l~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~fw~~~~~~~~~~~el~~ 291 (355)
T PF01937_consen 214 PGSKVVFHVKGIPWFVNDVTMEDAEWLLERLADSDDFSLSALGKGLDKYLES--GRVIVSGDDFWTPGLDLWEMSPELYE 291 (355)
T ss_dssp TTSEEEEEEBSS--TTTB-BHHHHHHHHHHHH-TTTCHHHHHHTTHHHHHHT--SEEEEESSCGGSSS--CCGSHHHHHH
T ss_pred CCCeEEEEECCCCCeeccCcHHHHHHHHHHHHhcccccccccccchhhcccc--CeEEecCCCccCCCCChHHcCHHHHH
Confidence 8999999999999 9999999999988877775542 22221223 357777887 999999999999999
Q ss_pred HHhcCCEEEEeccCC--ccccccccccccc-----------cchhhhhcCHHHHHHhCCccCc
Q psy11662 295 ELSSIDLIVLEGMGR--TVHTNLNAKFTCE-----------SLKLAVIKNRWLAQRLGGQMFS 344 (346)
Q Consensus 295 ~~~~aDLVIskGMGr--al~tN~~a~f~~~-----------~lkLa~iK~~~vA~~Lg~~~~~ 344 (346)
.+++|||||+||||| .|+.+.+..++|+ .++|.++||++||..+ +.+++
T Consensus 292 ~l~~adLVI~KG~~Nyr~L~~d~~~~~t~~f~~~~~~~p~~i~~L~~~Kc~~va~~~-~~~~d 353 (355)
T PF01937_consen 292 ELSEADLVIFKGDLNYRKLLGDRNWPPTTPFKTALGFFPAPILFLRTVKCDVVAGLL-VGQGD 353 (355)
T ss_dssp HHCC-SEEEEEHHHHHHHHTTSCTTTTTSEHHHHTGTSS--EEEEEE--SHHHHHHH-STTTH
T ss_pred HHhhCCEEEEeCCHHHhhhhcCcCCCCCCCccccchhHHHHHHHhHhhCCHHHhCCC-ccCcC
Confidence 999999999999977 7777777776665 8999999999999999 66555
No 5
>KOG2201|consensus
Probab=99.86 E-value=8.6e-23 Score=196.85 Aligned_cols=204 Identities=25% Similarity=0.338 Sum_probs=161.2
Q ss_pred HhhhcCCCCcchHHhhHhhHHHHHHHHHHHHhHhhhhccCCc---hhhhhhcCChhhhHHHHHHHhcCCCCccccHHHHH
Q psy11662 113 YLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDG---KSIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWL 189 (346)
Q Consensus 113 ~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~~---~~~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~ 189 (346)
.++..+..|.-++++++++.....+++|++......-+.... ..+.||++||+++.|+|.+.+..+.-+.|+|++|+
T Consensus 58 ~~~~~~~~~~rl~~~~~e~~~~~~~L~Fi~~~~~~~~~k~~~~~~~~i~aTGGGA~Kf~d~~~~~l~v~l~k~Dem~~LI 137 (371)
T KOG2201|consen 58 AYGKTGYRDGRLHFINFETFKIDGCLNFIRFNITDHPVKNFSKLTTVICATGGGAYKFEDLFREILDVKLDKEDEMDCLI 137 (371)
T ss_pred ccccccccccEEEEEEeeecCccchhHHhhcchhhccccccccceeEEEEeCCcceeHHHHHHHHhCceEeehhHHHHHH
Confidence 344467788999999999999999999999876543222111 13778999999999999999998989999999999
Q ss_pred HHhc---CCCCCceEEEEecCCCccee------cC-chHHHHHHHhCCCeEEEEEe---------cccccchhhHHHHHH
Q psy11662 190 DRLN---NGPPHSKAAIFVDNSGIDIV------LG-ILPFARELLRRGTKVILCAN---------SAPALNDVTYSELVV 250 (346)
Q Consensus 190 ~~l~---~~~~~k~vl~f~DNsGeDIV------~d-~lPflreLl~~Gs~V~l~v~---------s~P~LNDvT~~eL~~ 250 (346)
.++. .+.|+. ++++.+.+.+.+. ++ +|||+ |+|+||+|+++++ ||.+|+++|+|+|..
T Consensus 138 ~G~~f~l~~i~~E-~fty~~~~~~~~~~~~~~~~d~~yPyL--LVNIGSGVSIlkV~~~~~feRvgGsSlGGGTf~GL~~ 214 (371)
T KOG2201|consen 138 KGLNFLLSNIPAE-CFTYENDEDEEVEFQTNFCLDSPYPYL--LVNIGSGVSILKVDGPDNFERVGGSSLGGGTFLGLGS 214 (371)
T ss_pred hhhHHHHhcCccc-eEEEecCCCcceecccCCccCCCCceE--EEEcCCCeEEEEEecCCceeEecccccCCcchhhhHh
Confidence 9986 244564 5666655443243 34 89999 9999999999954 555999999999999
Q ss_pred HHHHHhhHHHHHHHhh-cCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCccccccccccccccchhhhh
Q psy11662 251 LLRQAATVCHIIANAL-SSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVI 329 (346)
Q Consensus 251 llt~~~~~d~~l~~A~-~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral~tN~~a~f~~~~lkLa~i 329 (346)
|||+|+++||+|++|. |+++.++|.+|++|+| |+++.+..--.++++ +||++..+..-. +
T Consensus 215 LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg-~y~~fGL~~~~iASS--------FGk~~~~eK~~~----------~ 275 (371)
T KOG2201|consen 215 LLTGCKSFDELLELASRGDNRNVDMLVRDIYGG-DYSRFGLKGDLIASS--------FGKVIRKEKELS----------V 275 (371)
T ss_pred HhcCCCCHHHHHHHHhcCCCchhhhhhhhccCc-cHhhcCCChhHHHHH--------HHHHhhcccccc----------c
Confidence 9999999999999999 9999999999999987 699999988766666 777654332111 3
Q ss_pred cCHHHHHHh
Q psy11662 330 KNRWLAQRL 338 (346)
Q Consensus 330 K~~~vA~~L 338 (346)
+.+.+|+.|
T Consensus 276 s~eDia~Sl 284 (371)
T KOG2201|consen 276 SKEDIARSL 284 (371)
T ss_pred ChHHHHHHH
Confidence 556666654
No 6
>PLN02920 pantothenate kinase 1
Probab=99.74 E-value=2.3e-18 Score=171.03 Aligned_cols=183 Identities=28% Similarity=0.431 Sum_probs=142.6
Q ss_pred CCcchHHhhHhhHHHHHHHHHHHHhHhhhhc----cC--Cc-hhhhhhcCChhhhHHHHHHHhcCCCCccccHHHHHHHh
Q psy11662 120 PDPYLEFVKFETKYIADCLDFIAANLINSIE----CM--DG-KSIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRL 192 (346)
Q Consensus 120 ~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld----~l--~~-~~~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~~~l 192 (346)
.-+-++|++|++....+++++++......-. .. .+ ..+.+|++||+++.+++.+++....-+.|+|++++.++
T Consensus 56 ~~g~l~F~~F~T~~i~~~i~fl~~~~~~~~~~~~~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~i~~~k~DEm~~li~Gl 135 (398)
T PLN02920 56 VNGRLHFAKFETRKINDCLEFISSNKLHHGGFQHHENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKEDEMDCLVTGA 135 (398)
T ss_pred CCceEEEEEecccCHHHHHHHHHhccccccccccccccCCCceEEEEECCcHHHHHHHHHhhhCCCceeecHHHHHHHHH
Confidence 3467899999999999999999876432210 01 11 23888999999999999988877777899999999998
Q ss_pred cC--CCCCceEEEEecCCCcceec---CchHHHHHHHhCCCeEEEEE---------ecccccchhhHHHHHHHHHHHhhH
Q psy11662 193 NN--GPPHSKAAIFVDNSGIDIVL---GILPFARELLRRGTKVILCA---------NSAPALNDVTYSELVVLLRQAATV 258 (346)
Q Consensus 193 ~~--~~~~k~vl~f~DNsGeDIV~---d~lPflreLl~~Gs~V~l~v---------~s~P~LNDvT~~eL~~llt~~~~~ 258 (346)
.. ....+++++|.+..-+-+.+ +++||+ |+|+||+|+++. .+|.+|+++|+|+|..||+++.++
T Consensus 136 ~fLl~~~~~e~f~y~~~~~~~~~~~~~~lyPyL--LVNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~LLtg~~sf 213 (398)
T PLN02920 136 NFLLKAVHHEAFTYLDGQKEFVQIDHNDLYPYL--LVNIGSGVSMIKVDGDGKFERVSGTSVGGGTFWGLGKLLTKCKSF 213 (398)
T ss_pred HHHHhhCCcceeEeccCcccccccCccccCceE--EEEcCCCEEEEEEeCCCcEEEEcccccchHhHHHHHHHHcCCCCH
Confidence 51 11234677776643331222 789999 999999999985 456699999999999999999999
Q ss_pred HHHHHHhh-cCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCccc
Q psy11662 259 CHIIANAL-SSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVH 312 (346)
Q Consensus 259 d~~l~~A~-~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral~ 312 (346)
++++++|. |+++.++|.+|++|+|.++.+.+...- .|+--||+...
T Consensus 214 dEll~lA~~Gd~~nvDllVgDIYGg~~y~~~gL~~d--------~iASsFGKv~~ 260 (398)
T PLN02920 214 DELLELSHQGNNRVIDMLVGDIYGGMDYSKIGLSST--------TIASSFGKAIS 260 (398)
T ss_pred HHHHHHHhCCCccccCceeccccCCCCCCCCCCCcc--------ceeeccCcccc
Confidence 99999998 888899999999999999888775442 34446887654
No 7
>PLN02902 pantothenate kinase
Probab=99.71 E-value=6.5e-18 Score=180.26 Aligned_cols=182 Identities=29% Similarity=0.432 Sum_probs=142.9
Q ss_pred CCCcchHHhhHhhHHHHHHHHHHHHhHhhh--hcc-----CCc--hhhhhhcCChhhhHHHHHHHhcCCCCccccHHHHH
Q psy11662 119 FPDPYLEFVKFETKYIADCLDFIAANLINS--IEC-----MDG--KSIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWL 189 (346)
Q Consensus 119 ~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~--ld~-----l~~--~~~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~ 189 (346)
...+-+||.+|++.....+++|++...... +.. -.. ..+.+||+||+++.++|++++....-+.|+|++++
T Consensus 102 ~~~grl~F~~fet~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~aTGGGA~K~~~~~~~~l~~~l~k~DEm~~li 181 (876)
T PLN02902 102 ILGGRLHFVKFETSKINECLDFISSKQLHRGGIHSWLSKAPPNGNGVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLV 181 (876)
T ss_pred CCCceEEEEEcCcccHHHHHHHHHHhcccccchhhhccccCCCCceEEEEeCCccccHHHHHHHHhCCCeeeecHHHHHH
Confidence 345789999999999999999999865321 011 011 13788999999999999999998899999999999
Q ss_pred HHhcC---CCCCceEEEEecCCCccee----cCchHHHHHHHhCCCeEEEEE---------ecccccchhhHHHHHHHHH
Q psy11662 190 DRLNN---GPPHSKAAIFVDNSGIDIV----LGILPFARELLRRGTKVILCA---------NSAPALNDVTYSELVVLLR 253 (346)
Q Consensus 190 ~~l~~---~~~~k~vl~f~DNsGeDIV----~d~lPflreLl~~Gs~V~l~v---------~s~P~LNDvT~~eL~~llt 253 (346)
.++.. ..++ +++++.+..-. .+ .+++||+ |+|+||+|+++. .||.+|+++|+|+|..|||
T Consensus 182 ~Gl~fLl~~i~~-e~f~~~~~~~~-~~~~~~~~lyPyL--LVNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~LLt 257 (876)
T PLN02902 182 AGANFLLKAIRH-EAFTHMEGEKE-FVQIDQNDLFPYL--LVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLT 257 (876)
T ss_pred HHHHHHHhhCcc-hheeecccccc-ccccCccCCCceE--EEEcCCceEEEEEecCCcEEEecccccccHhHHHHHHHHc
Confidence 99851 2234 45555442222 21 2689999 999999999885 5566999999999999999
Q ss_pred HHhhHHHHHHHhh-cCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCccc
Q psy11662 254 QAATVCHIIANAL-SSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVH 312 (346)
Q Consensus 254 ~~~~~d~~l~~A~-~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral~ 312 (346)
++.+|++++++|. |++..+++.+|++|+|.+|.+.+...-. |+-.||+.++
T Consensus 258 g~~sFdEll~LA~~Gd~~~vDllVgDIYGg~~y~~~GL~~d~--------iASSFGKv~~ 309 (876)
T PLN02902 258 KCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSAST--------IASSFGKVIS 309 (876)
T ss_pred CCCCHHHHHHHHhcCCccccCeeeccccCCCCcCCCCCCcch--------hhhccCcccc
Confidence 9999999999998 8888899999999999998888765433 3335787654
No 8
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=99.68 E-value=4.8e-17 Score=152.14 Aligned_cols=173 Identities=24% Similarity=0.292 Sum_probs=140.7
Q ss_pred CcchHHhhHhhHHHHHHHHHHHHhHhhhhccCCc-hh-hhhhcCChhhhHHHHHHHhcCCCCccccHHHHHHHhcC---C
Q psy11662 121 DPYLEFVKFETKYIADCLDFIAANLINSIECMDG-KS-IKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNN---G 195 (346)
Q Consensus 121 Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~~-~~-~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~~~l~~---~ 195 (346)
+--+.||.+++++..++++++.. +.++...... .. +.||++||++++|.+.+.+..+..+.+++++++.+|.. +
T Consensus 39 snrl~F~t~eT~kId~~ve~l~~-li~~h~k~C~~~~~liatGGga~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~ 117 (342)
T COG5146 39 SNRLTFKTEETKKIDQVVEWLNN-LIQQHEKLCLTKITLIATGGGAYKFYDRMSKQLDIKVIRENEMEILINGLNYFVIN 117 (342)
T ss_pred ccceeeehHhhhhHHHHHHHHHH-HHHHHHhhhhheeeEEecCCcchhhHHHHhhhccceeeecchHHHHHhcccceeee
Confidence 44677999999999999988754 3344444432 23 77889999999999999988888889999999999862 3
Q ss_pred CCCceEEEEecCCCccee-------cCchHHHHHHHhCCCeEEEEEeccc---------ccchhhHHHHHHHHHHHhhHH
Q psy11662 196 PPHSKAAIFVDNSGIDIV-------LGILPFARELLRRGTKVILCANSAP---------ALNDVTYSELVVLLRQAATVC 259 (346)
Q Consensus 196 ~~~k~vl~f~DNsGeDIV-------~d~lPflreLl~~Gs~V~l~v~s~P---------~LNDvT~~eL~~llt~~~~~d 259 (346)
.|. .|+..-|.++|-+. -|+||++ |+|+|++|++..+++| +++++|+|+|..|||++.++|
T Consensus 118 IP~-evFv~~d~~~e~~~~~~~~~~h~lypyi--lvNiGsGvSilkvtgpsqf~RvGGsslGGGtlwGLlsLlt~a~~yd 194 (342)
T COG5146 118 IPA-EVFVEFDAASEGLGILLKEQGHDLYPYI--LVNIGSGVSILKVTGPSQFERVGGSSLGGGTLWGLLSLLTQATDYD 194 (342)
T ss_pred ccH-HHeeeeccccchhhhhhhhcccccccee--eEeccCCeEEEEecCcchhccccccccCcchHHHHHHHHcccccHH
Confidence 333 56666676665332 5679999 9999999999966655 899999999999999999999
Q ss_pred HHHHHhh-cCCceEEEecCCCCcccCccccCHHHHHHHhc
Q psy11662 260 HIIANAL-SSGRLVAMETAQAGPCLDLSRLGRDLATELSS 298 (346)
Q Consensus 260 ~~l~~A~-~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~ 298 (346)
+++++|+ |++.-++|.+|++|. .|+++.+.....++++
T Consensus 195 qmld~aq~GDn~svDmlVgdIYg-~dy~~~glks~~iAss 233 (342)
T COG5146 195 QMLDMAQHGDNNSVDMLVGDIYG-DDYEEPGLKSDLIASS 233 (342)
T ss_pred HHHHHHhcCCCccceeeehhhcc-CccccCCCCchhhHHH
Confidence 9999999 888889999999996 7899999877655555
No 9
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=99.66 E-value=5.4e-18 Score=166.97 Aligned_cols=185 Identities=26% Similarity=0.372 Sum_probs=134.1
Q ss_pred CCCCcchHHhhHhhHHHHHHHHHHHHhHhhhhccCC-chhhhhhcCChhhhHHHHHHHhcCCCCccccHHHHHHHhcC--
Q psy11662 118 DFPDPYLEFVKFETKYIADCLDFIAANLINSIECMD-GKSIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNN-- 194 (346)
Q Consensus 118 g~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~-~~~~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~~~l~~-- 194 (346)
...++-++|.++++....+++++++....+...... ...+.||++||+++.+++++++..+..+.|+|++++.++..
T Consensus 47 ~~~~g~L~Fi~FeT~~ie~~i~fi~~~~~~~~~~~~~~~~I~aTGGGA~Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl 126 (341)
T PF03630_consen 47 KERGGRLHFIKFETKNIEECIDFIKENILEHKGISQKITKICATGGGAFKYADLFKEKLGVEVQKEDEMECLIKGLNFLL 126 (341)
T ss_dssp TTEEEEEEEEEEEGGGHHHHHHHHHHS--S-TTGGGCSSEEEEESTTHHHHHCHHHCTSTSEEEE--HHHHHHHHHHHHH
T ss_pred cCcCCEEEEEEechhhHHHHHHHHHHhhhhccccCccceEEEEeCCcHHHHHHHHHHhcCCCeeEehHHHHHHhhHHHHH
Confidence 446788999999999999999999987653211111 22388999999999999999999999999999999999851
Q ss_pred CCCCceEEEEe-cCCCcce------ecCchHHHHHHHhCCCeEEEEE---------ecccccchhhHHHHHHHHHHHhhH
Q psy11662 195 GPPHSKAAIFV-DNSGIDI------VLGILPFARELLRRGTKVILCA---------NSAPALNDVTYSELVVLLRQAATV 258 (346)
Q Consensus 195 ~~~~k~vl~f~-DNsGeDI------V~d~lPflreLl~~Gs~V~l~v---------~s~P~LNDvT~~eL~~llt~~~~~ 258 (346)
....+++++|. |..++.+ .-+++||+ |+|+||+|+++. .+|.+|+++|+|+|..+|+++.++
T Consensus 127 ~~i~~E~f~y~~~~~~~~~~~~~~~~~~~~Pyl--lvniGsGvSi~~v~~~~~~~rvgGs~iGGgT~~GL~~llt~~~~~ 204 (341)
T PF03630_consen 127 KNIPDEVFTYDNDEDPEKFEKVPIDNSDIYPYL--LVNIGSGVSILKVEGPNQFERVGGSSIGGGTFWGLCSLLTGCKSF 204 (341)
T ss_dssp HTTB-SEEEEETTTSTTT-EEEEETTSS-SSEE--EEEESSSEEEEEEEETTEEEEEEEES-SHHHHHHHHHHHH---SH
T ss_pred hcCCcceEEEecCCCcceecccccCCCCCCcEE--EEEcCCceEEEEEeCCCceEEEeccccchHhHHHHHHHhcCCCCH
Confidence 11234677776 3333311 25779999 999999999984 566799999999999999999999
Q ss_pred HHHHHHhh-cCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCcccc
Q psy11662 259 CHIIANAL-SSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHT 313 (346)
Q Consensus 259 d~~l~~A~-~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral~t 313 (346)
++++++|. |+++.+++.+|++|++ +++..+... | +|+-.||+..+.
T Consensus 205 ~e~~~la~~G~~~~vDllV~DIyg~-~y~~~~L~~-------~-~~AssFGk~~~~ 251 (341)
T PF03630_consen 205 DEILELAKKGDNSNVDLLVGDIYGG-DYNKIGLPG-------D-LTASSFGKVQSK 251 (341)
T ss_dssp HHHHHHHHH--GGGTSEEHHHHHSS--BGGGTB-T-------T-SEEETTCCGGSH
T ss_pred HHHHHHhcCCCccccCceeeeccCC-CcccCCCCH-------H-HHHhhhhhhhhc
Confidence 99999998 8888999999999986 576655433 3 456779987643
No 10
>PTZ00297 pantothenate kinase; Provisional
Probab=99.61 E-value=4.3e-16 Score=176.35 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=136.9
Q ss_pred cchHHhhHhhHHHHHHHHHHHHhHhhhhccCCch-hhhhhcCChhhhHHHHHHHhcCCCCccccHHHHHHHhcC--CCCC
Q psy11662 122 PYLEFVKFETKYIADCLDFIAANLINSIECMDGK-SIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNN--GPPH 198 (346)
Q Consensus 122 py~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~~~-~~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~~~l~~--~~~~ 198 (346)
+-++|++|++....+++++++...........+. .+++||+||++|++++++.++..+...|+|++++.++.. ....
T Consensus 1106 g~l~f~~f~t~~i~~~~~~l~~~~~~~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~~~~~~~dEm~~li~G~~~l~~~~~ 1185 (1452)
T PTZ00297 1106 GTLRFAKIPSKQIPDFADYLAGSHAINYYKPQYRTKVRATGGGAFKYASVAKKVLGINFSVMREMDAVVKGLNLVIRVAP 1185 (1452)
T ss_pred eEEEEEEecccCHHHHHHHHHhhhhhcccCcCCceEEEEeCCcHHHHHHHHHHHhCCCcceecHHHHHHHHHHHHHhcCC
Confidence 5689999999999999999987644221111222 388999999999999999888778889999999999862 2245
Q ss_pred ceEEEEecCCCcc----e------ecCchHHHHHHHhCCCeEEEEE----------ecccccchhhHHHHHHHHHHHhhH
Q psy11662 199 SKAAIFVDNSGID----I------VLGILPFARELLRRGTKVILCA----------NSAPALNDVTYSELVVLLRQAATV 258 (346)
Q Consensus 199 k~vl~f~DNsGeD----I------V~d~lPflreLl~~Gs~V~l~v----------~s~P~LNDvT~~eL~~llt~~~~~ 258 (346)
++++++.+-.|+. + ..++|||+ |+|+||+||++. .||.+|+++|+|+|..|||++.++
T Consensus 1186 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~yp~l--lvNIGSGvSi~kv~~~~~~~~RvgGt~iGGGT~~GL~~llt~~~~f 1263 (1452)
T PTZ00297 1186 ESIFTVDPSTGVHHPHQLVSPPGDGFSPFPCL--LVNIGSGISIIKCLGPDGSHVRVGGSPIGGATFWGLVRTMTNVTSW 1263 (1452)
T ss_pred ceEEEeccccccccccccccCccccCCCCceE--EEEccCceEEEEEecCCCcEEEecCcccccHhHHHHHHHhcCCCCH
Confidence 5777665433432 1 14689999 999999999985 455699999999999999999999
Q ss_pred HHHHH---Hhh-cCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCcc
Q psy11662 259 CHIIA---NAL-SSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTV 311 (346)
Q Consensus 259 d~~l~---~A~-~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral 311 (346)
|++++ +|. |++..++|.+|++|+ .++...++-+ ..| .|+-.||+..
T Consensus 1264 ~e~l~~~~la~~Gd~~~vDllVgDIyg-~~~~~~~~~L-----~~~-~iASsfGk~~ 1313 (1452)
T PTZ00297 1264 EEVMEIMRLDGPGDNKNVDLLVGDIYG-YNAKDLPAML-----SVD-TVASTFGKLG 1313 (1452)
T ss_pred HHHHHHHHHhhCCCccccceEEeeccC-CCcccccCCC-----Ccc-eeeeccCccc
Confidence 99998 455 999999999999997 4555442222 122 4555677653
No 11
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=99.38 E-value=2.3e-13 Score=130.95 Aligned_cols=165 Identities=24% Similarity=0.322 Sum_probs=128.7
Q ss_pred CcchHHhhHhhHHHHHHHHHHHHhHhhhhccCCchhhhhhcCChhhhHHHHHHHhcCCCCccccHHHHHHHhcCCCCCce
Q psy11662 121 DPYLEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSK 200 (346)
Q Consensus 121 Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~~~~~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~~~l~~~~~~k~ 200 (346)
+.-++|+++++..+.+++++++..... .+ ....+.+|++||+++.+.+...+..+.-+.|++++...+++.
T Consensus 20 ~~~~~f~~~~~~~~~~~~~~l~~~~~~-~~--~~~~i~~TGgGa~k~~~~~~~~~~v~~~k~dE~~a~~~g~~~------ 90 (279)
T TIGR00555 20 KGRRKFKTFETTNIDKFIEWLKNQIHR-HS--RITTLCATGGGAFKFAELIYESAGIQLHKFDEFDALIQGLNY------ 90 (279)
T ss_pred CCcEEEEEeecccHHHHHHHHHHHHHh-hc--CceEEEEECCcHHHHHHHhccccCCcccchhHHHHHHHHHHH------
Confidence 556778999999999999888754321 11 112377889999999999987776677789999999999871
Q ss_pred EEEEecCCCcceecCchHHHHHHHhCCCeEEEE--------EecccccchhhHHHHHHHHHHHhhHHHHHHHhh-cCCce
Q psy11662 201 AAIFVDNSGIDIVLGILPFARELLRRGTKVILC--------ANSAPALNDVTYSELVVLLRQAATVCHIIANAL-SSGRL 271 (346)
Q Consensus 201 vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~--------v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~-~~~~l 271 (346)
+ + .+. .+ -+.+||+ |+++|++|+++ +.+|..|+++|+++|..||+++.++++++++|. |++..
T Consensus 91 l--l-~~~-~~--~~~~p~l--lvnIGsGvSi~~v~~~~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~ 162 (279)
T TIGR00555 91 L--L-KEE-PK--DDIYPYL--LVNIGTGTSILYVDGDNYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTN 162 (279)
T ss_pred H--h-hcc-cC--CCCCceE--EEEecCCeEEEEEcCccEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcc
Confidence 0 0 111 00 3568999 99999999988 456779999999999999999999999999999 88889
Q ss_pred EEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCcc
Q psy11662 272 VAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTV 311 (346)
Q Consensus 272 ~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral 311 (346)
+++.+|++||+ +++..+... | +|+--||+..
T Consensus 163 vDl~V~dIYg~-~y~~~~L~~-------d-~iASsfGkv~ 193 (279)
T TIGR00555 163 VDLLVGDIYGG-DYSESGLDG-------S-LTASSFGKVL 193 (279)
T ss_pred cccccccccCC-CCCCCCCCc-------c-eeeeccchhh
Confidence 99999999997 787776643 3 3666677654
No 12
>PRK13317 pantothenate kinase; Provisional
Probab=97.99 E-value=3.2e-06 Score=81.62 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=86.6
Q ss_pred hhhhcCChhhhHHHHHHHhcCCCCccccHHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHHHHhCCCeEEEE---
Q psy11662 157 IKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVILC--- 233 (346)
Q Consensus 157 ~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~--- 233 (346)
+.+|++|++++.+++. +.....++|++++...+++. +.++.|. +..||+ ++++|++++++
T Consensus 51 i~~TG~g~~~~~~~~~--~~~~~~~v~E~~a~~~g~~~---------l~~~~~~----~~~~~~--i~~iG~g~si~~~~ 113 (277)
T PRK13317 51 ICLTGGKAGYLQQLLN--YGYPIAEFVEFEATGLGVRY---------LLKEEGH----DLNDYI--FTNIGTGTSIHYVD 113 (277)
T ss_pred EEEECcchhhhhHHHh--cCCCeeeeHHHHHHHHHHHH---------HHHhcCC----CCCcEE--EEEecCceEEEEEe
Confidence 7788999999887652 22223358999999888761 1122222 334566 77888887765
Q ss_pred -----EecccccchhhHHHHHHHHHHHhhHHHHHHHhh-cCCceEEEecCCCCcccCccccC
Q psy11662 234 -----ANSAPALNDVTYSELVVLLRQAATVCHIIANAL-SSGRLVAMETAQAGPCLDLSRLG 289 (346)
Q Consensus 234 -----v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~-~~~~l~vv~sG~~~pg~dl~~~s 289 (346)
+.+|+.++++|+++|..+|+++.++++++++|. |++...++..|++||+ +.+.++
T Consensus 114 g~~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~-~~~~l~ 174 (277)
T PRK13317 114 GNSQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKG-PLPPIP 174 (277)
T ss_pred CCceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccccCC-CCCCCC
Confidence 467889999999999999999999999999999 7778899999999985 444444
No 13
>KOG3870|consensus
Probab=97.62 E-value=0.00031 Score=70.61 Aligned_cols=128 Identities=21% Similarity=0.337 Sum_probs=93.7
Q ss_pred CCCCccccHHHHHHHhcCCC---CCceEEEEecCCCcceecCchHHHHHHHhCC--CeEEEEEeccc-ccchhhHHHHHH
Q psy11662 177 LSPWLVDDLDDWLDRLNNGP---PHSKAAIFVDNSGIDIVLGILPFARELLRRG--TKVILCANSAP-ALNDVTYSELVV 250 (346)
Q Consensus 177 ~r~~~vDd~d~l~~~l~~~~---~~k~vl~f~DNsGeDIV~d~lPflreLl~~G--s~V~l~v~s~P-~LNDvT~~eL~~ 250 (346)
..-.++||+...-..|. +. .+.+|=++.||+|....-|.+ |++.|+..| ++|.+=++.-| -+.|+|..|.--
T Consensus 215 ~~~iLvnd~~~vW~~L~-~~k~s~~~rVDfVlDNaGfEL~~DLi-lAeyli~~glA~kV~fH~KaiPWFVSDvt~~Df~w 292 (434)
T KOG3870|consen 215 DEFILVNDTEDVWSKLS-NAKHSRNGRVDFVLDNAGFELFTDLI-LAEYLISSGLATKVRFHVKAIPWFVSDVTEKDFDW 292 (434)
T ss_pred ccceeecChHHHHHHhh-cchhcCCceEEEEEeCCccchhHHHH-HHHHHHhccccceEEEcccCCceeeecccccchHH
Confidence 34467999988887877 33 566788888999987867766 999999987 78999999999 899999999988
Q ss_pred HHHHHhhH-HHHHH-------HhhcCCceEEEe-----cCCCCcccCccccCHHHHHHHhcCCEEEEeccC
Q psy11662 251 LLRQAATV-CHIIA-------NALSSGRLVAME-----TAQAGPCLDLSRLGRDLATELSSIDLIVLEGMG 308 (346)
Q Consensus 251 llt~~~~~-d~~l~-------~A~~~~~l~vv~-----sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMG 308 (346)
++..+.+. ++.+. .-..+++.+.-+ |+..+- .+.++-+++-.-+..++|||-||==
T Consensus 293 ll~~L~~~~~~~ls~~g~k~~~~~~~Gk~vl~~~~FWTsph~y~--~M~~~~p~Ly~~L~~S~LvIFKGDL 361 (434)
T KOG3870|consen 293 LLEFLRDHEDEELSAFGKKLEKFIKEGKIVLRPHYFWTSPHDYY--RMPQVAPDLYDDLQKSSLVIFKGDL 361 (434)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHhcCcEEEccCccccCcchhh--cccccchHHHHHHhhCcEEEEeccc
Confidence 88877753 33322 122455544433 343432 4556778888888889999999953
No 14
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=51.72 E-value=11 Score=37.74 Aligned_cols=27 Identities=15% Similarity=0.423 Sum_probs=21.7
Q ss_pred CccccHHHHHHHhcCCCCCceEEEEecCC
Q psy11662 180 WLVDDLDDWLDRLNNGPPHSKAAIFVDNS 208 (346)
Q Consensus 180 ~~vDd~d~l~~~l~~~~~~k~vl~f~DNs 208 (346)
+.++|.+..++.++. -+.+++.|+|||
T Consensus 183 ~~I~eI~~~i~~vk~--inpn~ivFVDNC 209 (416)
T COG4100 183 LSIAEIEEMITFVKE--INPNVIVFVDNC 209 (416)
T ss_pred ccHHHHHHHHHHHHh--cCCCEEEEEecc
Confidence 578999999888873 344789999998
No 15
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=50.79 E-value=81 Score=27.18 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=26.1
Q ss_pred EEEe-cCCCcceecCchHHHHHHHhCCCeEEEEEecccccchhhHHH
Q psy11662 202 AIFV-DNSGIDIVLGILPFARELLRRGTKVILCANSAPALNDVTYSE 247 (346)
Q Consensus 202 l~f~-DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~e 247 (346)
.+.+ -|+|--. |-.. ++++|.++|.+|.++....+--.+.+..+
T Consensus 4 ~VvG~~~sGKTT-l~~~-Li~~l~~~g~~v~~ik~~~~g~~~~d~pG 48 (140)
T PF03205_consen 4 QVVGPKNSGKTT-LIRK-LINELKRRGYRVAVIKHTDHGQFEIDPPG 48 (140)
T ss_dssp EEEESTTSSHHH-HHHH-HHHHHHHTT--EEEEEE-STTSTTCSTTC
T ss_pred EEECCCCCCHHH-HHHH-HHHHHhHcCCceEEEEEccCCCcccCCCC
Confidence 3444 4888633 3233 66788889999998888888455555443
No 16
>PRK14556 pyrH uridylate kinase; Provisional
Probab=48.50 E-value=1.8e+02 Score=28.04 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHhCCCeEEEEEecccc-----------cchhhHHHHHHHHHHHhhH
Q psy11662 222 ELLRRGTKVILCANSAPA-----------LNDVTYSELVVLLRQAATV 258 (346)
Q Consensus 222 eLl~~Gs~V~l~v~s~P~-----------LNDvT~~eL~~llt~~~~~ 258 (346)
++.+.|.+|.+|+=||.+ +|-+|...+-.+-|.++++
T Consensus 49 ~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal 96 (249)
T PRK14556 49 TLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINAL 96 (249)
T ss_pred HHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHH
Confidence 445679999999766653 4455666666666666664
No 17
>KOG0020|consensus
Probab=45.49 E-value=90 Score=33.39 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=42.1
Q ss_pred CCCCccccHHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHHHHhCCCeEEEE
Q psy11662 177 LSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVILC 233 (346)
Q Consensus 177 ~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~ 233 (346)
..|-.+-.++..++|++. ..+.++|++-.+-..+ ..-||++-|++.|.+|+|.
T Consensus 513 ~~~~~~TsLdqYveRMK~--kQ~~IyymaGssr~e~--E~sPfvERLlkKGyEVi~l 565 (785)
T KOG0020|consen 513 NHPTKITSLDQYVERMKE--KQDKIYYMAGSSRKEV--EKSPFVERLLKKGYEVIYL 565 (785)
T ss_pred CCCCCcccHHHHHHHHhh--ccccEEEecCCcHhhh--ccCcHHHHHHhcCceEEEE
Confidence 557788889999999983 4557888877666544 3458999999999999998
No 18
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=42.08 E-value=69 Score=28.35 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred EEEEe--cCCCcceecCchHHHHHHHhCCCeEEEEEeccc
Q psy11662 201 AAIFV--DNSGIDIVLGILPFARELLRRGTKVILCANSAP 238 (346)
Q Consensus 201 vl~f~--DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P 238 (346)
++.|+ .|+|--.+... ++++|..+|..|-++...+.
T Consensus 3 vi~i~G~~gsGKTTli~~--L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEK--LIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred EEEEECCCCCCHHHHHHH--HHHHHHHcCCcEEEEEecCC
Confidence 44455 58886443222 45667778988877765544
No 19
>PRK00536 speE spermidine synthase; Provisional
Probab=41.21 E-value=1.5e+02 Score=28.66 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=40.1
Q ss_pred CCCCceEEEEecCCCcceecCchHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEE
Q psy11662 195 GPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAM 274 (346)
Q Consensus 195 ~~~~k~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv 274 (346)
.+..|+||+++--.|. -+||+++..++|++|--+.-+ -++ +..+-+.+..|..+.|+.++
T Consensus 70 h~~pk~VLIiGGGDGg--------~~REvLkh~~~v~mVeID~~V------v~~------~k~~lP~~~~~~~DpRv~l~ 129 (262)
T PRK00536 70 KKELKEVLIVDGFDLE--------LAHQLFKYDTHVDFVQADEKI------LDS------FISFFPHFHEVKNNKNFTHA 129 (262)
T ss_pred CCCCCeEEEEcCCchH--------HHHHHHCcCCeeEEEECCHHH------HHH------HHHHCHHHHHhhcCCCEEEe
Confidence 4467899999988887 569999997788888644321 122 23444455556667777766
No 20
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=39.76 E-value=68 Score=27.72 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=50.2
Q ss_pred eecCchHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhc-CCceEEEecCCCC
Q psy11662 212 IVLGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALS-SGRLVAMETAQAG 280 (346)
Q Consensus 212 IV~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~-~~~l~vv~sG~~~ 280 (346)
+++|++|.. .|.=+++-.+.-.-|.|.|.+++..++..+..+...++.+.+ ++....+.+|...
T Consensus 26 afld~~P~~-----~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~a 90 (138)
T COG0537 26 AFLDIYPAA-----PGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAA 90 (138)
T ss_pred EEecCCCCC-----CCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCccc
Confidence 457887775 566566666777899999999999999999999888888775 6677788887543
No 21
>KOG3349|consensus
Probab=38.60 E-value=99 Score=28.07 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=22.8
Q ss_pred cCccccCHHHHHHHhcCCEEEEec-cCCccc
Q psy11662 283 LDLSRLGRDLATELSSIDLIVLEG-MGRTVH 312 (346)
Q Consensus 283 ~dl~~~s~el~~~~~~aDLVIskG-MGral~ 312 (346)
+|.=+.++++.+.+++|||||+-+ -|-.++
T Consensus 65 id~y~f~psl~e~I~~AdlVIsHAGaGS~le 95 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDIRSADLVISHAGAGSCLE 95 (170)
T ss_pred EEEEecCccHHHHHhhccEEEecCCcchHHH
Confidence 455577899999999999999975 443333
No 22
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=36.91 E-value=2.8e+02 Score=26.67 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=53.2
Q ss_pred HHHHhCCCeEEEEEecccc----------cchhhHHHHHHHHHHHhhHHHHHHHhhc-CCceEEEecCCCCcccCccccC
Q psy11662 221 RELLRRGTKVILCANSAPA----------LNDVTYSELVVLLRQAATVCHIIANALS-SGRLVAMETAQAGPCLDLSRLG 289 (346)
Q Consensus 221 reLl~~Gs~V~l~v~s~P~----------LNDvT~~eL~~llt~~~~~d~~l~~A~~-~~~l~vv~sG~~~pg~dl~~~s 289 (346)
++++..|.+|.+++=||.+ +|-+|...+-.+-|.++++ .|..|++ .+-...+.|.-..|.+--....
T Consensus 38 ~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal--~L~~aL~~~~~~~~v~sai~~~~~~e~~~~ 115 (238)
T COG0528 38 KELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNAL--ALQDALERLGVDTRVQSAIAMPQVAEPYSR 115 (238)
T ss_pred HHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHH--HHHHHHHhcCCcceecccccCccccCccCH
Confidence 4567779999888766653 5566666676776776664 3444553 2333445555566644444555
Q ss_pred HHHHHHHhcCCEEEEec-cCC
Q psy11662 290 RDLATELSSIDLIVLEG-MGR 309 (346)
Q Consensus 290 ~el~~~~~~aDLVIskG-MGr 309 (346)
.++.+.++.=.+||.-| .||
T Consensus 116 ~~A~~~l~~grVvIf~gGtg~ 136 (238)
T COG0528 116 REAIRHLEKGRVVIFGGGTGN 136 (238)
T ss_pred HHHHHHHHcCCEEEEeCCCCC
Confidence 67777777666666433 565
No 23
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=36.35 E-value=1.2e+02 Score=25.91 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=17.6
Q ss_pred ccccCHHHHHHHhcCCEEEEeccCC
Q psy11662 285 LSRLGRDLATELSSIDLIVLEGMGR 309 (346)
Q Consensus 285 l~~~s~el~~~~~~aDLVIskGMGr 309 (346)
++++-..+.++-++.|+||++|.|.
T Consensus 86 ~~~i~~~~~~l~~~~D~viid~~g~ 110 (166)
T TIGR00347 86 LEELSKHLRTLEQKYDFVLVEGAGG 110 (166)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 3344445555556799999999984
No 24
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=33.91 E-value=1.4e+02 Score=26.99 Aligned_cols=114 Identities=20% Similarity=0.243 Sum_probs=64.7
Q ss_pred ccccHHHHH-HHhcCCCCCceEEEEecC-CCcceecCchHHHHHHHhC-CCeEEEEEecccccchhhHHHHHHHHHHHhh
Q psy11662 181 LVDDLDDWL-DRLNNGPPHSKAAIFVDN-SGIDIVLGILPFARELLRR-GTKVILCANSAPALNDVTYSELVVLLRQAAT 257 (346)
Q Consensus 181 ~vDd~d~l~-~~l~~~~~~k~vl~f~DN-sGeDIV~d~lPflreLl~~-Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~ 257 (346)
-++.+|.++ -++. +...+++.+++ +|-.+ |..- |+-+-++. |-+|+|+.-..|. ..++..+.+
T Consensus 4 GI~~LD~~l~GGip---~gs~~li~G~~GsGKT~-l~~q-~l~~~~~~~ge~vlyvs~ee~~---------~~l~~~~~s 69 (226)
T PF06745_consen 4 GIPGLDELLGGGIP---KGSVVLISGPPGSGKTT-LALQ-FLYNGLKNFGEKVLYVSFEEPP---------EELIENMKS 69 (226)
T ss_dssp SSTTHHHHTTTSEE---TTSEEEEEESTTSSHHH-HHHH-HHHHHHHHHT--EEEEESSS-H---------HHHHHHHHT
T ss_pred CchhHHHhhcCCCC---CCcEEEEEeCCCCCcHH-HHHH-HHHHhhhhcCCcEEEEEecCCH---------HHHHHHHHH
Confidence 356777765 2333 34445666664 56533 4332 44333455 9999999877776 344444444
Q ss_pred HHHHHHHhhcCCceEEEecCCCCc---ccCccccCHHHHHHHhc--CCEEEEeccC
Q psy11662 258 VCHIIANALSSGRLVAMETAQAGP---CLDLSRLGRDLATELSS--IDLIVLEGMG 308 (346)
Q Consensus 258 ~d~~l~~A~~~~~l~vv~sG~~~p---g~dl~~~s~el~~~~~~--aDLVIskGMG 308 (346)
+.--++.....+.+.+++...... ..+++.+-..+.+.+++ .+.||+=+..
T Consensus 70 ~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 70 FGWDLEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp TTS-HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cCCcHHHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 432244445566777777655443 25677777777777765 7888888763
No 25
>PRK00784 cobyric acid synthase; Provisional
Probab=33.78 E-value=74 Score=33.16 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=22.9
Q ss_pred cCccccCHHHHHHHhcCCEEEEeccCCcccccc
Q psy11662 283 LDLSRLGRDLATELSSIDLIVLEGMGRTVHTNL 315 (346)
Q Consensus 283 ~dl~~~s~el~~~~~~aDLVIskGMGral~tN~ 315 (346)
++++++-..+..+..++|+||+||.|-....++
T Consensus 110 ~~~~~I~~~~~~l~~~~D~vIVEGaGg~~~~~L 142 (488)
T PRK00784 110 RLLEAVLESLDRLAAEYDVVVVEGAGSPAEINL 142 (488)
T ss_pred hhHHHHHHHHHHHHhcCCEEEEECCCCccccCc
Confidence 455666556655556799999999986544554
No 26
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=33.27 E-value=1.1e+02 Score=24.03 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=51.3
Q ss_pred eEEEEecCCCcceecCchHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhc-CCceEEEecCC
Q psy11662 200 KAAIFVDNSGIDIVLGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALS-SGRLVAMETAQ 278 (346)
Q Consensus 200 ~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~-~~~l~vv~sG~ 278 (346)
.++|-.|++ . ++++..|.. .|.=+++-.+--+.+.|.|-++...++.-+..+...+..+.+ ++....+.+|.
T Consensus 7 ~vv~e~~~~-~-~~~~~~p~~-----~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~ 79 (98)
T PF01230_consen 7 RVVYEDDHF-V-AFLDIFPIS-----PGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGP 79 (98)
T ss_dssp EEEEE-SSE-E-EEEESSTSS-----TTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESG
T ss_pred eEEEECCCE-E-EEEcCCCCC-----CeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchh
Confidence 344444433 2 457777765 565455557788899999999999999888888888887764 34456666665
Q ss_pred CCc
Q psy11662 279 AGP 281 (346)
Q Consensus 279 ~~p 281 (346)
.++
T Consensus 80 ~~g 82 (98)
T PF01230_consen 80 AAG 82 (98)
T ss_dssp GGT
T ss_pred hhc
Confidence 443
No 27
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=33.21 E-value=76 Score=29.35 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=49.8
Q ss_pred CCCcceecCchHHHHHHHhCCCeEEEEEecccccch-------hhHHHHHHHHHHHhhHHHHHHH----hhcCCceEEEe
Q psy11662 207 NSGIDIVLGILPFARELLRRGTKVILCANSAPALND-------VTYSELVVLLRQAATVCHIIAN----ALSSGRLVAME 275 (346)
Q Consensus 207 NsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P~LND-------vT~~eL~~llt~~~~~d~~l~~----A~~~~~l~vv~ 275 (346)
++|--+|- .. +++.|.++|.+|.+. +|+..+ ..-.|+.. +....+.+.-.+. +.... ..
T Consensus 13 ~vGKT~vt-~~-L~~~l~~~g~~v~~~---KPi~~g~~~~~~~~~~~D~~~-l~~~~~~~~~~~~~~p~~~~~~----~a 82 (231)
T PRK12374 13 SVGKTVVS-RA-LLQALASQGKTVAGY---KPVAKGSKETPEGLRNKDALV-LQSVSSIELPYEAVNPIALSEE----ES 82 (231)
T ss_pred CCCHHHHH-HH-HHHHHHHCCCeEEEE---CccccCCccCCCCCchHHHHH-HHHhcCCCCCHHhccCeecCCC----cC
Confidence 57764432 22 678899999999887 444433 22334443 3344333211110 00000 00
Q ss_pred cCCCCcccCccccCHHHHHHHhcCCEEEEeccCC
Q psy11662 276 TAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGR 309 (346)
Q Consensus 276 sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGr 309 (346)
.....--++++++-..+..+-++.|.||.||-|.
T Consensus 83 ~~~~~~~i~~~~i~~~~~~l~~~~D~VlVEGaGg 116 (231)
T PRK12374 83 SVAHSCPINYTLMSNGLANLSEKVDHVVVEGTGG 116 (231)
T ss_pred hHHcCCcCCHHHHHHHHHHHHhhCCEEEEECCCC
Confidence 1111123566777777766667799999999993
No 28
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=32.66 E-value=1.9e+02 Score=27.37 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=22.9
Q ss_pred EEEEec--CCCcceecCchHHHHHHHhCCCeEEEEEecc
Q psy11662 201 AAIFVD--NSGIDIVLGILPFARELLRRGTKVILCANSA 237 (346)
Q Consensus 201 vl~f~D--NsGeDIV~d~lPflreLl~~Gs~V~l~v~s~ 237 (346)
++.++. |+|-..+... ++++|..+|..|.++.-..
T Consensus 3 vi~ivG~~gsGKTtl~~~--l~~~L~~~G~~V~viK~~~ 39 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEK--ILKNLKERGYRVATAKHTH 39 (229)
T ss_pred EEEEECCCCChHHHHHHH--HHHHHHhCCCeEEEEEecc
Confidence 555664 7886443333 5677888899998886443
No 29
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=32.51 E-value=1.6e+02 Score=25.79 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred cCCCcceecCchHHHHHHHhCCCeEEEEEeccc
Q psy11662 206 DNSGIDIVLGILPFARELLRRGTKVILCANSAP 238 (346)
Q Consensus 206 DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P 238 (346)
-++|--.+.-. ++++|..+|.+|.++.....
T Consensus 8 ~gsGKTtl~~~--l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 8 KNSGKTTLIER--LVKALKARGYRVATIKHDHH 38 (155)
T ss_pred CCCCHHHHHHH--HHHHHHhcCCeEEEEecccc
Confidence 36675332222 45667778999998886644
No 30
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=32.03 E-value=11 Score=38.51 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=57.8
Q ss_pred CCCCchhhhHHHHHHHHh-hhcCCCCcc--hHHhhHhhHHHHHHHHHHHHhHhhhhccCC----chhhhhh---------
Q psy11662 97 AYGNLTVRSLLDTIEHYL-KEFDFPDPY--LEFVKFETKYIADCLDFIAANLINSIECMD----GKSIKAT--------- 160 (346)
Q Consensus 97 ~~g~~~~r~ll~~re~~l-r~~g~~Dpy--~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~----~~~~~at--------- 160 (346)
.|+.++- +.-|.++ +.||-+|.- -+|-.--.+.+..++-.|||-- ++-.+. |.....+
T Consensus 50 GY~D~GR----d~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD--~ll~~tG~PYDTL~~VIG~~g~~~GS 123 (403)
T PF06838_consen 50 GYDDIGR----DKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGD--ELLSITGKPYDTLEEVIGIRGNGPGS 123 (403)
T ss_dssp -TT-HHH----HHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT---EEEESSSS--CCHHHHHTSSSSSSSS
T ss_pred CCCCccH----HHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCC--eEEEcCCCchhhHHHHhCCCCCCCCC
Confidence 4555655 4445555 668888875 3555666677788887777652 111111 1111111
Q ss_pred --cCCh-hhhHHHH----------HHHh----------------cCCCCccccHHHHHHHhcCCCCCceEEEEecCC---
Q psy11662 161 --GGGA-YKYANLI----------QEKL----------------GLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNS--- 208 (346)
Q Consensus 161 --D~GA-~~~~dl~----------~~~l----------------~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNs--- 208 (346)
+||. ++..++. ++.+ ..+.+.++++...++.++. -...+++|+|||
T Consensus 124 L~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~--~~p~~iifVDNCYGE 201 (403)
T PF06838_consen 124 LKEFGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKE--INPDVIIFVDNCYGE 201 (403)
T ss_dssp TGGGT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHH--H-TTSEEEEE-TTTT
T ss_pred hHHhCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHh--hCCCeEEEEeCCcce
Confidence 5665 2222221 1111 2455788998888887762 122578899998
Q ss_pred ----------CcceecCchHHHHHHHhCCCeE
Q psy11662 209 ----------GIDIVLGILPFARELLRRGTKV 230 (346)
Q Consensus 209 ----------GeDIV~d~lPflreLl~~Gs~V 230 (346)
|.|++-|-| ++|.|-++
T Consensus 202 FvE~~EP~~vGADl~aGSL-----IKNpGGgi 228 (403)
T PF06838_consen 202 FVETQEPTEVGADLMAGSL-----IKNPGGGI 228 (403)
T ss_dssp TTSSS-GGGGT-SEEEEET-----TSGGGTTT
T ss_pred eccccCccccchhheeccc-----eeCCCCCc
Confidence 677776654 56666443
No 31
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.00 E-value=46 Score=32.50 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=27.3
Q ss_pred CCceEEEEecCCC--------cceecCchHHHHHHHhCCCe-EEEEEecccc
Q psy11662 197 PHSKAAIFVDNSG--------IDIVLGILPFARELLRRGTK-VILCANSAPA 239 (346)
Q Consensus 197 ~~k~vl~f~DNsG--------eDIV~d~lPflreLl~~Gs~-V~l~v~s~P~ 239 (346)
|+..++|++||++ +.|+-=.+-.+..|+.+|.+ |++++|+..+
T Consensus 29 P~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa 80 (269)
T COG0796 29 PDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASA 80 (269)
T ss_pred CCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence 6789999999975 33321112233467788877 4667777654
No 32
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=30.53 E-value=96 Score=33.85 Aligned_cols=79 Identities=27% Similarity=0.350 Sum_probs=46.1
Q ss_pred eEEEEec--CCCccee-cCchHHHHHHHhCCCeEEEEEecccccch-hhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEe
Q psy11662 200 KAAIFVD--NSGIDIV-LGILPFARELLRRGTKVILCANSAPALND-VTYSELVVLLRQAATVCHIIANALSSGRLVAME 275 (346)
Q Consensus 200 ~vl~f~D--NsGeDIV-~d~lPflreLl~~Gs~V~l~v~s~P~LND-vT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~ 275 (346)
.+++-+- ++|--.| ++ +++.|.++|.+|-+.. |+..| +|+.++...+ .
T Consensus 4 ~l~I~~T~t~~GKT~vslg---L~~~L~~~G~~Vg~fK---Pi~~~p~~~~~~~~~~----------------------~ 55 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLG---LMRALERKGVKVGFFK---PIAQPPLTMSEVEALL----------------------A 55 (684)
T ss_pred EEEEEECCCCCCHHHHHHH---HHHHHHhCCCeEEEeC---CcccCCCCHHHHHHHH----------------------h
Confidence 4444432 4665333 44 6678999999999885 76653 4444443321 1
Q ss_pred cCCCCcccCccccCHHHHHHHhcCCEEEEeccC
Q psy11662 276 TAQAGPCLDLSRLGRDLATELSSIDLIVLEGMG 308 (346)
Q Consensus 276 sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMG 308 (346)
.|.. -..++++-..+..+..++|+||++|-+
T Consensus 56 ~~~~--~~~~~~I~~~~~~l~~~~D~VLIEGa~ 86 (684)
T PRK05632 56 SGQL--DELLEEIVARYHALAKDCDVVLVEGLD 86 (684)
T ss_pred ccCC--hHHHHHHHHHHHHhccCCCEEEEeCcC
Confidence 1111 134556666666666678888888865
No 33
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=30.03 E-value=48 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.6
Q ss_pred HHHHHHhCCCeEEEEEecccccchhhH
Q psy11662 219 FARELLRRGTKVILCANSAPALNDVTY 245 (346)
Q Consensus 219 flreLl~~Gs~V~l~v~s~P~LNDvT~ 245 (346)
+++.|.+.|. |.=.....|+|||+=+
T Consensus 56 ll~~l~~~g~-I~~f~~~~PSL~DIFi 81 (84)
T PF13732_consen 56 LLQELIEKGI-IRSFEEEEPSLEDIFI 81 (84)
T ss_pred HHHHHHhCCC-eeEEEEcCCCHHHHHH
Confidence 5588999999 9999999999999854
No 34
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.97 E-value=51 Score=30.64 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=27.1
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEe
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLE 305 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIsk 305 (346)
+.+.++.+|-+ |.+.++.+..+++++||+|+..
T Consensus 3 g~l~iVGvGpG----dp~~lT~~A~~~L~~advI~~~ 35 (249)
T PRK06136 3 GKVYLVGAGPG----DPDLITLKGVRLLEQADVVLYD 35 (249)
T ss_pred cEEEEEEECCC----ChHHHHHHHHHHHhcCCEEEEc
Confidence 45677888854 5578999999999999999974
No 35
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=29.24 E-value=76 Score=28.25 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=26.5
Q ss_pred eEEEecCCCCcccCccccCHHHHHHHhcCCEEEEec
Q psy11662 271 LVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 271 l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskG 306 (346)
+.++..|-+ |.+.++.+..+++++||+|+...
T Consensus 2 l~iVG~GpG----~~~~lT~~a~~~l~~advv~~~~ 33 (210)
T PF00590_consen 2 LYIVGLGPG----DPDLLTLRALEALKNADVVIGPE 33 (210)
T ss_dssp EEEEEEBSS----SGGGSBHHHHHHHHHSSEEEEET
T ss_pred EEEEecCCC----CHHHHHHHHHHHHHhCCcccccc
Confidence 456777754 45789999999999999999888
No 36
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.89 E-value=2e+02 Score=27.43 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=45.7
Q ss_pred cCchHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCccccCHHHH
Q psy11662 214 LGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRDLA 293 (346)
Q Consensus 214 ~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl~~~s~el~ 293 (346)
+.-+||++.+.+.|..|++ +-+..|+.|+...+.-+. ..+...+.++..=+.|| +.++.+.....
T Consensus 100 l~n~~lL~~~A~tgkPvIl------STG~stl~EI~~Av~~~~--------~~~~~~l~llHC~s~YP-~~~e~~NL~~i 164 (241)
T PF03102_consen 100 LTNLPLLEYIAKTGKPVIL------STGMSTLEEIERAVEVLR--------EAGNEDLVLLHCVSSYP-TPPEDVNLRVI 164 (241)
T ss_dssp TT-HHHHHHHHTT-S-EEE------E-TT--HHHHHHHHHHHH--------HHCT--EEEEEE-SSSS---GGG--TTHH
T ss_pred ccCHHHHHHHHHhCCcEEE------ECCCCCHHHHHHHHHHHH--------hcCCCCEEEEecCCCCC-CChHHcChHHH
Confidence 3457899999998888877 457778888877644331 12566788999999999 58899998888
Q ss_pred HHHhc-CCEEE
Q psy11662 294 TELSS-IDLIV 303 (346)
Q Consensus 294 ~~~~~-aDLVI 303 (346)
..+++ .++.|
T Consensus 165 ~~L~~~f~~~v 175 (241)
T PF03102_consen 165 PTLKERFGVPV 175 (241)
T ss_dssp HHHHHHSTSEE
T ss_pred HHHHHhcCCCE
Confidence 88875 55444
No 37
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=28.79 E-value=49 Score=26.99 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=15.5
Q ss_pred HHHHhc-CCEEEEeccCCccc
Q psy11662 293 ATELSS-IDLIVLEGMGRTVH 312 (346)
Q Consensus 293 ~~~~~~-aDLVIskGMGral~ 312 (346)
...|.+ +|=|++|||||+|.
T Consensus 19 lt~fn~g~~eV~iKarG~aIs 39 (87)
T TIGR00285 19 LTQLNSGADEVIIKARGRAIS 39 (87)
T ss_pred HHHHhCCCCeEEEEEecchhh
Confidence 344444 89999999999885
No 38
>KOG1800|consensus
Probab=28.24 E-value=71 Score=33.12 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=49.3
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCC------cccCccccC--HHHHHHHh------------cCC
Q psy11662 241 NDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAG------PCLDLSRLG--RDLATELS------------SID 300 (346)
Q Consensus 241 NDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~------pg~dl~~~s--~el~~~~~------------~aD 300 (346)
-|+|+.||.. ++| ++|+..|+.. ||-+++-+. .||..++. +.+
T Consensus 98 ~dvsl~eL~~------~yd-----------avvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~ 160 (468)
T KOG1800|consen 98 RDVSLKELTD------NYD-----------AVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGR 160 (468)
T ss_pred ccccHHHHhh------ccc-----------EEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccc
Confidence 6889999988 565 5888888843 555544443 45555554 156
Q ss_pred EEEEeccCC-cc------ccccccccc---cccchhhhhcCHH
Q psy11662 301 LIVLEGMGR-TV------HTNLNAKFT---CESLKLAVIKNRW 333 (346)
Q Consensus 301 LVIskGMGr-al------~tN~~a~f~---~~~lkLa~iK~~~ 333 (346)
-|++-|||| |+ -+|...++. ...++|-..|+.-
T Consensus 161 ~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~ 203 (468)
T KOG1800|consen 161 KVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSN 203 (468)
T ss_pred eEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCC
Confidence 788999999 44 467777773 3345555555543
No 39
>PRK13760 putative RNA-associated protein; Provisional
Probab=27.54 E-value=3.5e+02 Score=25.89 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=45.8
Q ss_pred HHhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCCccccccCCcCCCCCchhhhHHHHHHHHhhhcCCC-CcchHHhhHh
Q psy11662 52 ERAIASQPHSTTGEERATKFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFP-DPYLEFVKFE 130 (346)
Q Consensus 52 ~~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p~~~~~~~~~~~~g~~~~r~ll~~re~~lr~~g~~-Dpy~~~K~~e 130 (346)
+..+..---..++++|-+..-+++.+++..+.++-. ||.+--..++ .+-|.++++.++. ||++..|++.
T Consensus 77 ~~IL~kGeiQlt~~eR~~~~e~k~r~Ii~~Ia~~~v------nP~T~~P~p~----~rIE~Am~e~~~~idp~k~ak~Qa 146 (231)
T PRK13760 77 EEIIKKGEIQLTAEQRREMLEEKRRQIINFIARNAI------NPQTGLPHPP----QRIENAMEEARVHIDPFKSVEEQV 146 (231)
T ss_pred HHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHhcc------CCCCCCCCCH----HHHHHHHHhcCcccCCCCCHHHHH
Confidence 344444444556888988999999998888876433 2213222234 4567788888864 9999998854
Q ss_pred h
Q psy11662 131 T 131 (346)
Q Consensus 131 N 131 (346)
.
T Consensus 147 ~ 147 (231)
T PRK13760 147 K 147 (231)
T ss_pred H
Confidence 3
No 40
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=26.93 E-value=76 Score=31.01 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=29.2
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEecc
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGM 307 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGM 307 (346)
+.+.++.+| || |++.++....+++.+||+|+.+.-
T Consensus 12 g~Ly~Vgtg---iG-n~edITlRAl~~L~~aDvI~~edt 46 (287)
T PRK14994 12 GQLYIVPTP---IG-NLADITQRALEVLQAVDLIAAEDT 46 (287)
T ss_pred CeEEEEeCC---CC-ChHHhhHHHHHHHHhCCEEEEeCC
Confidence 567778877 44 677899999999999999998864
No 41
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=26.33 E-value=1.5e+02 Score=31.17 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=25.4
Q ss_pred EEEEe--cCCCcceecCchHHHHHHHhCCCeEEEEEecccc
Q psy11662 201 AAIFV--DNSGIDIVLGILPFARELLRRGTKVILCANSAPA 239 (346)
Q Consensus 201 vl~f~--DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P~ 239 (346)
|+-|+ -|||-...... ++.+|.++|.+|.++.-++--
T Consensus 3 Vi~IvG~sgSGKTTLiek--LI~~L~~rG~rVavIKH~hH~ 41 (452)
T PRK14495 3 VYGIIGWKDAGKTGLVER--LVAAIAARGFSVSTVKHSHHD 41 (452)
T ss_pred EEEEEecCCCCHHHHHHH--HHHHHHhCCCeEEEEeccCcc
Confidence 45555 48997553333 567888999999998765543
No 42
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.85 E-value=1.3e+02 Score=25.70 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=20.7
Q ss_pred CchHHHHHHHhCCCeEEEEEecccccc
Q psy11662 215 GILPFARELLRRGTKVILCANSAPALN 241 (346)
Q Consensus 215 d~lPflreLl~~Gs~V~l~v~s~P~LN 241 (346)
|.. ++++|++.|.+|+.++|+..-+-
T Consensus 11 G~~-l~~~L~~~~~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 11 GRA-LAKQLLRRGHEVTALVRSPSKAE 36 (183)
T ss_dssp HHH-HHHHHHHTTSEEEEEESSGGGHH
T ss_pred HHH-HHHHHHHCCCEEEEEecCchhcc
Confidence 444 88999999999999998876443
No 43
>PHA02053 hypothetical protein
Probab=24.94 E-value=60 Score=27.23 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=30.3
Q ss_pred EEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCC
Q psy11662 272 VAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGR 309 (346)
Q Consensus 272 ~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGr 309 (346)
..+.+|++.|+ |- ..+.+|..++.+.|+|.+.|.|-
T Consensus 55 ~li~sGddmP~-D~-~ta~~F~kayR~~~VIysr~lGS 90 (115)
T PHA02053 55 LLIASGDDMPI-DA-NTATEFQKAYRSWGVIYSRSLGS 90 (115)
T ss_pred HHHHcCCCCCC-CC-CCHHHHHHHHHhcCeeeecCCCc
Confidence 34779999995 42 46789999999999999999993
No 44
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=24.93 E-value=2.6e+02 Score=26.85 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=50.9
Q ss_pred HHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCCccccccCCcCCCCCchhhhHHHHHHHHhhhcCC-CCcchHHhhH
Q psy11662 51 AERAIASQPHSTTGEERATKFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDF-PDPYLEFVKF 129 (346)
Q Consensus 51 ~~~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p~~~~~~~~~~~~g~~~~r~ll~~re~~lr~~g~-~Dpy~~~K~~ 129 (346)
++-.+..---.-||++|-+..-++..+++..+..+-. ||..--..++ ..-+.++.+.++ .||+...+.+
T Consensus 76 ~~eIl~kGeiQlTaeqR~~m~e~k~rqIi~~IsRn~I------dP~t~~P~Pp----~rIe~Ameeakv~id~~K~ae~Q 145 (234)
T COG1500 76 AEEILKKGEIQLTAEQRREMLEEKKRQIINIISRNAI------DPQTKAPHPP----ARIEKAMEEAKVHIDPFKSAEEQ 145 (234)
T ss_pred HHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHhcc------CCCCCCCCCH----HHHHHHHHhcCcccCCCCCHHHH
Confidence 3344445555667899999999999999988876533 2213212233 346788888886 5999999887
Q ss_pred hhHHHHHHH
Q psy11662 130 ETKYIADCL 138 (346)
Q Consensus 130 eN~~Al~~l 138 (346)
..+....+-
T Consensus 146 v~evlK~l~ 154 (234)
T COG1500 146 VQEVLKALR 154 (234)
T ss_pred HHHHHHHHh
Confidence 655444443
No 45
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=24.70 E-value=62 Score=27.71 Aligned_cols=29 Identities=17% Similarity=0.513 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhhcCCCCcchHHhhHhhHH
Q psy11662 105 SLLDTIEHYLKEFDFPDPYLEFVKFETKY 133 (346)
Q Consensus 105 ~ll~~re~~lr~~g~~Dpy~~~K~~eN~~ 133 (346)
.|-|--+.++|..|.+|||-.+|.+--..
T Consensus 54 VlaEpIQTvmRr~g~~~pYE~LK~lTRg~ 82 (115)
T PF08328_consen 54 VLAEPIQTVMRRYGIPNPYEKLKELTRGK 82 (115)
T ss_dssp GGHHHHHHHHHHTT-SSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcCC
Confidence 45588899999999999999999875444
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=24.61 E-value=2.4e+02 Score=28.29 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=36.9
Q ss_pred HHHHHHhCCCeEEEEEe-------cccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCccccCHH
Q psy11662 219 FARELLRRGTKVILCAN-------SAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRD 291 (346)
Q Consensus 219 flreLl~~Gs~V~l~v~-------s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl~~~s~e 291 (346)
|.++|..+|.+|.+++. +|.+|+|=|.-.-... .. +-..+-+.|.-..+| +++-..+
T Consensus 71 L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~-----~~---------~vFiRs~~srG~lGG--lS~at~~ 134 (323)
T COG1703 71 LGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV-----DP---------GVFIRSSPSRGTLGG--LSRATRE 134 (323)
T ss_pred HHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhcc-----CC---------CeEEeecCCCccchh--hhHHHHH
Confidence 55666777777766653 3456666554332221 00 001233334333343 3455555
Q ss_pred HHHHHhc--CCEEEEeccC
Q psy11662 292 LATELSS--IDLIVLEGMG 308 (346)
Q Consensus 292 l~~~~~~--aDLVIskGMG 308 (346)
...+++. .|+||+|-.|
T Consensus 135 ~i~~ldAaG~DvIIVETVG 153 (323)
T COG1703 135 AIKLLDAAGYDVIIVETVG 153 (323)
T ss_pred HHHHHHhcCCCEEEEEecC
Confidence 5555555 6777776444
No 47
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=24.31 E-value=2.9e+02 Score=26.44 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=43.9
Q ss_pred HhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCCccccccCCcCCCCCchhhhHHHHHHHHhhhcCC-CCcchHHhhHhh
Q psy11662 53 RAIASQPHSTTGEERATKFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDF-PDPYLEFVKFET 131 (346)
Q Consensus 53 ~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p~~~~~~~~~~~~g~~~~r~ll~~re~~lr~~g~-~Dpy~~~K~~eN 131 (346)
..+..---..++++|-+..-+++.+++..+..+-. ||.+.-..++ .+-|.++++.++ -||++..|++..
T Consensus 78 ~IL~kGeiQls~~eR~~~~e~k~~~Ii~~Ia~~~V------nP~T~~P~p~----~rIE~Am~e~~~~idp~k~ak~Qa~ 147 (231)
T TIGR00291 78 KIILKGEIQLTAEQRREMLEKKRNQIINIISRNTI------NPQTKKPHPP----TRIEKALEEAKVHIDIFKSVEEQVL 147 (231)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHhCc------CCCCCCCCCH----HHHHHHHHhcCcCcCCCCCHHHHHH
Confidence 33333334455788888888889888888865432 2212222233 456777777775 599999998653
Q ss_pred H
Q psy11662 132 K 132 (346)
Q Consensus 132 ~ 132 (346)
+
T Consensus 148 ~ 148 (231)
T TIGR00291 148 E 148 (231)
T ss_pred H
Confidence 3
No 48
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.97 E-value=2.7e+02 Score=24.47 Aligned_cols=66 Identities=23% Similarity=0.251 Sum_probs=49.5
Q ss_pred cccccchhhHHHHHHHHHHHhhHHHHHHHhh-cCCceEEEecCCC----CcccCccccCHHHHHHHhc--CCEEEEec
Q psy11662 236 SAPALNDVTYSELVVLLRQAATVCHIIANAL-SSGRLVAMETAQA----GPCLDLSRLGRDLATELSS--IDLIVLEG 306 (346)
Q Consensus 236 s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~-~~~~l~vv~sG~~----~pg~dl~~~s~el~~~~~~--aDLVIskG 306 (346)
..|.+ |.|.+|...| +.+.+.++.++ .+++..+++.... .++.++..|..-..++.++ ||+++.=.
T Consensus 16 ~~~~~-~~~~~e~~RL----~~~~~~lr~~L~~~G~y~vVd~~~~~a~i~~~~~l~~C~gC~~~~Ar~~GAd~~lvG~ 88 (140)
T PF11684_consen 16 AEPAP-GQTPAEAARL----AALTDQLREALAESGRYRVVDLAPVAAEIAAAQNLRKCNGCEARIARELGADYVLVGE 88 (140)
T ss_pred CCCCC-CCCHHHHHHH----HHHHHHHHHHHHhcCCeEEecCchhHHHhhccCCcccCCCHHHHHHHHcCCCEEEEEE
Confidence 44555 8899999887 46667777777 5676888887643 3667889999988888888 89887633
No 49
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=23.87 E-value=87 Score=29.62 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=27.7
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEec
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskG 306 (346)
+++.++..|-+ |.+.++.+..+++++||+|+..+
T Consensus 8 ~~l~iVG~GpG----~~~~lT~~A~~~L~~advv~~~~ 41 (257)
T PRK15473 8 RCVWFVGAGPG----DKELITLKGYRLLQQAQVVIYAG 41 (257)
T ss_pred CEEEEEEeCCC----ChHHhhHHHHHHHHhCCEEEEec
Confidence 55677888755 44689999999999999999764
No 50
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=23.83 E-value=79 Score=28.97 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=24.7
Q ss_pred eEEEecCCCCcccCccccCHHHHHHHhcCCEEEEe
Q psy11662 271 LVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLE 305 (346)
Q Consensus 271 l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIsk 305 (346)
+.++..|-+ |.+.++.+..+++++||+|+..
T Consensus 2 i~iVG~GpG----~~~~lT~~a~~~l~~advI~~~ 32 (236)
T TIGR01469 2 VYLVGAGPG----DPELLTLKALRLLQEADVVLYD 32 (236)
T ss_pred EEEEecCCC----ChHHhHHHHHHHHHhCCEEEEe
Confidence 356666643 5678999999999999999973
No 51
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=23.46 E-value=83 Score=29.64 Aligned_cols=32 Identities=6% Similarity=0.049 Sum_probs=25.6
Q ss_pred ceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEe
Q psy11662 270 RLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLE 305 (346)
Q Consensus 270 ~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIsk 305 (346)
.+.++..|-+ |++.++....+++++||+|+..
T Consensus 3 ~v~iVG~GpG----dp~~lT~ra~~~L~~AdvV~~~ 34 (246)
T PRK05765 3 KLYIVGIGPG----SKEQRTIKAQEAIEKSNVIIGY 34 (246)
T ss_pred EEEEEEcCCC----ChHHhhHHHHHHHHhCCEEEEc
Confidence 4566777744 5678999999999999999944
No 52
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=23.12 E-value=83 Score=29.88 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=29.1
Q ss_pred CCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEecc
Q psy11662 268 SGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGM 307 (346)
Q Consensus 268 ~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGM 307 (346)
.+.+.++.+|-+ |.+.++.+..+++.+||+|+....
T Consensus 14 ~g~l~vVG~GpG----dp~~LTl~a~~~l~~ADvI~~~~~ 49 (263)
T PLN02625 14 PGNVFLVGTGPG----DPDLLTLKALRLLQTADVVLYDRL 49 (263)
T ss_pred CCEEEEEEeCCC----ChHHhHHHHHHHHhcCCEEEEeCc
Confidence 466788888854 557899999999999999997554
No 53
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=22.87 E-value=73 Score=29.35 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.6
Q ss_pred ceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEecc
Q psy11662 270 RLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGM 307 (346)
Q Consensus 270 ~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGM 307 (346)
.+.++..|-+ |.+.++.+..+++.+||+|+....
T Consensus 2 ~i~iVG~GpG----~~~~lT~~a~~~l~~advV~~~~~ 35 (230)
T TIGR01467 2 KLYGVGVGPG----DPELITVKALEALRSADVIAVPAS 35 (230)
T ss_pred EEEEEEecCC----CcHHHHHHHHHHHhhCCEEEEeCC
Confidence 3566777744 557899999999999999997553
No 54
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.52 E-value=2e+02 Score=23.93 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHHHhCCCeEEEE---------Eecccccchh-hHHHHHHHHHHHhhHHHHHHHhhcC-CceEEEecCCCCcccCccc
Q psy11662 219 FARELLRRGTKVILC---------ANSAPALNDV-TYSELVVLLRQAATVCHIIANALSS-GRLVAMETAQAGPCLDLSR 287 (346)
Q Consensus 219 flreLl~~Gs~V~l~---------v~s~P~LNDv-T~~eL~~llt~~~~~d~~l~~A~~~-~~l~vv~sG~~~pg~dl~~ 287 (346)
.++.|++.|.+|+.+ ...-|+|.|. .--|+.-+.+.....-+.++.+... -+..++.+| .
T Consensus 19 v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---------~ 89 (116)
T PF13380_consen 19 VLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---------A 89 (116)
T ss_dssp HHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---------S
T ss_pred HHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---------h
Confidence 445666666666544 1112344432 2222222333333333444443311 234677777 6
Q ss_pred cCHHHHHHHhcCCEEEE
Q psy11662 288 LGRDLATELSSIDLIVL 304 (346)
Q Consensus 288 ~s~el~~~~~~aDLVIs 304 (346)
.++++.++++++++-|+
T Consensus 90 ~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 90 ESEELIEAAREAGIRVI 106 (116)
T ss_dssp --HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 78899999999888775
No 55
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=22.40 E-value=81 Score=25.91 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=18.1
Q ss_pred cccCHHHHHHHhcCCEEEEeccCCccc
Q psy11662 286 SRLGRDLATELSSIDLIVLEGMGRTVH 312 (346)
Q Consensus 286 ~~~s~el~~~~~~aDLVIskGMGral~ 312 (346)
+.+..-+..+-..++=|++|||||+|.
T Consensus 16 nYV~~~~~~l~~g~~eV~iKa~G~aIs 42 (91)
T PRK04015 16 NYVLAVLTQFNQGAKEVVIKARGRAIS 42 (91)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 334333333324699999999999885
No 56
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=22.14 E-value=92 Score=27.96 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=24.3
Q ss_pred eEEEecCCCCcccCccccCHHHHHHHhcCCEEEEe
Q psy11662 271 LVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLE 305 (346)
Q Consensus 271 l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIsk 305 (346)
+.++..|-+ |.+.++++..+++++||+|+..
T Consensus 2 l~vVG~GpG----~~~~lT~~a~~~l~~advv~~~ 32 (210)
T PRK05787 2 IYIVGIGPG----DPEYLTLKALEAIRKADVVVGS 32 (210)
T ss_pred EEEEEeCCC----ChHHhhHHHHHHHHhCCEEEEc
Confidence 356666644 4568999999999999999953
No 57
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.88 E-value=4.1e+02 Score=26.55 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=49.7
Q ss_pred chHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCC--ceEEEecCCCCcccCccccCHHHH
Q psy11662 216 ILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSG--RLVAMETAQAGPCLDLSRLGRDLA 293 (346)
Q Consensus 216 ~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~--~l~vv~sG~~~pg~dl~~~s~el~ 293 (346)
-+||++++-+.|..|++ .+|. .|++|....+.-+. +.|.+ ++.++.-.+.|| ...+.+.....
T Consensus 122 n~pLL~~~A~~gkPvil-StGm-----atl~Ei~~Av~~i~--------~~G~~~~~i~llhC~s~YP-~~~~~~nL~~I 186 (329)
T TIGR03569 122 NAPLLKKIARFGKPVIL-STGM-----ATLEEIEAAVGVLR--------DAGTPDSNITLLHCTTEYP-APFEDVNLNAM 186 (329)
T ss_pred CHHHHHHHHhcCCcEEE-ECCC-----CCHHHHHHHHHHHH--------HcCCCcCcEEEEEECCCCC-CCcccCCHHHH
Confidence 47999999999887644 4444 37887777543322 12433 478888888899 57778888888
Q ss_pred HHHhc-CCEEE
Q psy11662 294 TELSS-IDLIV 303 (346)
Q Consensus 294 ~~~~~-aDLVI 303 (346)
..+.+ .++.|
T Consensus 187 ~~Lk~~f~~pV 197 (329)
T TIGR03569 187 DTLKEAFDLPV 197 (329)
T ss_pred HHHHHHhCCCE
Confidence 77776 55444
No 58
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=21.84 E-value=4.8e+02 Score=27.34 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=32.9
Q ss_pred cccHHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHHHHhCCCeEEEEEeccccc
Q psy11662 182 VDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVILCANSAPAL 240 (346)
Q Consensus 182 vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P~L 240 (346)
+|.++...+.+. .|++++++|+.=+ +++++-|.+.|.+|+.+ +.|-.
T Consensus 302 ~dal~d~~~~L~----GKrvai~Gdp~~~------i~LarfL~elGmevV~v--gt~~~ 348 (457)
T CHL00073 302 WESLKDYLDLVR----GKSVFFMGDNLLE------ISLARFLIRCGMIVYEI--GIPYM 348 (457)
T ss_pred HHHHHHHHHHHC----CCEEEEECCCcHH------HHHHHHHHHCCCEEEEE--EeCCC
Confidence 456666666665 5688888876555 35888899999998877 44443
No 59
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=21.75 E-value=35 Score=30.12 Aligned_cols=14 Identities=14% Similarity=0.563 Sum_probs=11.7
Q ss_pred CCEEEEeccCCccc
Q psy11662 299 IDLIVLEGMGRTVH 312 (346)
Q Consensus 299 aDLVIskGMGral~ 312 (346)
-+-|.++|||+||+
T Consensus 61 ~~~V~v~gtGkAIe 74 (144)
T PF12328_consen 61 SEEVTVKGTGKAIE 74 (144)
T ss_dssp -SEEEEEEEGGGHH
T ss_pred ccEEEEEeccHHHH
Confidence 46799999999986
No 60
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=21.36 E-value=1.1e+02 Score=29.42 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.2
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEE
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIV 303 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVI 303 (346)
+++.|+..|-. +.+.++++..+++++||.||
T Consensus 3 G~L~VVGiGPG----~~~~mT~~A~~al~~ad~iv 33 (249)
T COG1010 3 GKLYVVGIGPG----DPELMTPEARRALEEADVIV 33 (249)
T ss_pred ceEEEEEeCCC----ChhhCCHHHHHHHHhCCEEE
Confidence 67788888844 45799999999999999987
No 61
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=21.16 E-value=87 Score=25.66 Aligned_cols=26 Identities=35% Similarity=0.476 Sum_probs=17.8
Q ss_pred CCcceecCchHHHHHHHhCCCeEEEEE
Q psy11662 208 SGIDIVLGILPFARELLRRGTKVILCA 234 (346)
Q Consensus 208 sGeDIV~d~lPflreLl~~Gs~V~l~v 234 (346)
++-|+ .-.+++.++|.++|.+|+++.
T Consensus 8 t~Ghv-~P~lala~~L~~rGh~V~~~~ 33 (139)
T PF03033_consen 8 TRGHV-YPFLALARALRRRGHEVRLAT 33 (139)
T ss_dssp SHHHH-HHHHHHHHHHHHTT-EEEEEE
T ss_pred ChhHH-HHHHHHHHHHhccCCeEEEee
Confidence 33344 445667789999999999774
No 62
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=21.04 E-value=1.9e+02 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=21.1
Q ss_pred cccCccccC-HHHHHHHhcCCEEEEecc
Q psy11662 281 PCLDLSRLG-RDLATELSSIDLIVLEGM 307 (346)
Q Consensus 281 pg~dl~~~s-~el~~~~~~aDLVIskGM 307 (346)
+.+-+...+ +++.+.+..||+||++|=
T Consensus 232 ~ni~~~~~~~~~~~~~m~~ad~vIs~~G 259 (318)
T PF13528_consen 232 GNIHVRPFSTPDFAELMAAADLVISKGG 259 (318)
T ss_pred CCEEEeecChHHHHHHHHhCCEEEECCC
Confidence 344455555 899999999999999973
No 63
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=20.80 E-value=3.1e+02 Score=27.37 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=24.3
Q ss_pred EEEEe--cCCCcceecCchHHHHHHHhCCCeEEEEEeccccc
Q psy11662 201 AAIFV--DNSGIDIVLGILPFARELLRRGTKVILCANSAPAL 240 (346)
Q Consensus 201 vl~f~--DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P~L 240 (346)
++-|+ =|+|-..+... +++.|.++|..|.++..+.-..
T Consensus 207 ~~~~~g~~~~GKtt~~~~--l~~~l~~~g~~v~~iKh~~h~~ 246 (366)
T PRK14489 207 LLGVVGYSGTGKTTLLEK--LIPELIARGYRIGLIKHSHHRV 246 (366)
T ss_pred EEEEecCCCCCHHHHHHH--HHHHHHHcCCEEEEEEECCccc
Confidence 55555 47776442222 4567778899998887765543
No 64
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=20.64 E-value=1e+02 Score=28.95 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=25.9
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEE
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVL 304 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIs 304 (346)
+.+.++..|-+ |.+.++....+++++||+|+.
T Consensus 3 ~~l~iVG~GpG----~p~~lT~~a~~~l~~AdvV~~ 34 (250)
T PRK05991 3 GRLFVIGTGPG----NPEQMTPEALAAVEAATDFFG 34 (250)
T ss_pred ceEEEEEeCCC----ChhhhhHHHHHHHHhCCEEEE
Confidence 45677777744 557899999999999999994
No 65
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=20.60 E-value=3.5e+02 Score=25.87 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=28.5
Q ss_pred hHHHHHHHhhcCC-ceEEEec-CCCCcccCccccCHHHHHHHhcCCEEEEeccCCc
Q psy11662 257 TVCHIIANALSSG-RLVAMET-AQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRT 310 (346)
Q Consensus 257 ~~d~~l~~A~~~~-~l~vv~s-G~~~pg~dl~~~s~el~~~~~~aDLVIskGMGra 310 (346)
.++.+++.|...+ ..+++++ |..++ -...++..+||||+==|+..
T Consensus 71 ~l~~~~e~a~~~~~d~VlvDleG~as~---------~~~~aia~sDlVlIP~~~s~ 117 (231)
T PF07015_consen 71 ILEDAYEAAEASGFDFVLVDLEGGASE---------LNDYAIARSDLVLIPMQPSQ 117 (231)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCch---------hHHHHHHHCCEEEECCCCCh
Confidence 3444555444333 4567766 54443 35667788999999888864
No 66
>PF05797 Rep_4: Yeast trans-acting factor (REP1/REP2); InterPro: IPR008897 This family consists of the Saccharomyces cerevisiae trans-acting factor B and C (REP1 and 2) proteins. The S. cerevisiae plasmid stability system consists of two plasmid-coded proteins, Rep1 and Rep2, and a cis-acting locus, STB. The Rep proteins show both self- and cross-interactions in vivo and in vitro, and bind to the STB DNA with assistance from host factor(s). Within the S. cerevisiae nucleus, the Rep1 and Rep2 proteins tightly associate with STB-containing plasmids into well organised plasmid foci that form a cohesive unit in partitioning. It is generally accepted that the protein-protein and DNA-protein interactions engendered by the Rep-STB system are central to plasmid partitioning. Point mutations in Rep1 that knock out interaction with Rep2 or with STB simultaneously block the ability of these Rep1 variants to support plasmid stability [].; GO: 0030541 plasmid partitioning
Probab=20.09 E-value=2.7e+02 Score=28.21 Aligned_cols=57 Identities=5% Similarity=-0.018 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcCCccccccCCcCCCCCchhhhHHHHHHHHhhhcCCCCcchHHhhHhhHHHHHHHHHHHH
Q psy11662 74 KYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAA 143 (346)
Q Consensus 74 ~~~~~L~~l~~~p~~~~~~~~~~~~g~~~~r~ll~~re~~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr~ 143 (346)
.|.+.|+.|.+++. . +.+.+-+.|.......|++.-.-+++++-...=-.++-.||.
T Consensus 253 ~fw~~i~~L~~~~~---------s----~~~~~~~~~~La~yl~~~~~~~eel~~~r~~~r~~lY~~lK~ 309 (339)
T PF05797_consen 253 SFWEVINSLEEKWQ---------S----EPEQQGVIRKLAMYLLSNPEEMEELKRQRKDARNRLYHILKD 309 (339)
T ss_pred HHHHHHHHHHhcCc---------c----CcccchHHHHHHHHHHhCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999877 1 222233344444444555555555665544333444444444
Done!