Query psy11662
Match_columns 346
No_of_seqs 190 out of 454
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 15:42:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xfi_A Unknown protein; struct 100.0 9.4E-66 3.2E-70 507.5 23.9 297 8-346 40-359 (367)
2 2g8l_A 287AA long hypothetical 100.0 2.7E-43 9.3E-48 339.0 20.7 263 11-346 17-291 (299)
3 2ffj_A Conserved hypothetical 100.0 5.8E-41 2E-45 322.8 18.6 265 10-346 16-295 (300)
4 2i7n_A Pantothenate kinase 1; 99.3 1.3E-14 4.6E-19 142.5 -5.5 197 97-311 49-268 (360)
5 3pt1_A UPF0364 protein YMR027W 99.3 1.1E-11 3.8E-16 125.5 10.8 130 177-308 221-386 (471)
6 2ews_A Pantothenate kinase; PA 97.4 1.6E-05 5.3E-10 75.9 -0.6 130 126-282 44-182 (287)
7 3hh1_A Tetrapyrrole methylase 51.2 18 0.0006 28.8 4.5 34 269-306 6-39 (117)
8 3qxc_A Dethiobiotin synthetase 42.5 38 0.0013 30.6 5.8 102 198-308 21-141 (242)
9 3p0t_A Uncharacterized protein 41.2 1.2E+02 0.004 24.4 8.2 92 185-283 5-96 (138)
10 4e16_A Precorrin-4 C(11)-methy 34.7 40 0.0014 30.3 4.7 34 269-306 5-38 (253)
11 2qbu_A Precorrin-2 methyltrans 33.7 36 0.0012 29.7 4.1 35 269-307 3-37 (232)
12 3kwp_A Predicted methyltransfe 32.3 36 0.0012 31.8 4.0 34 269-306 16-49 (296)
13 3nut_A Precorrin-3 methylase; 32.3 41 0.0014 30.2 4.3 33 269-305 9-41 (251)
14 1vhv_A Diphthine synthase; str 31.2 44 0.0015 30.3 4.3 35 268-306 12-46 (268)
15 3fgn_A Dethiobiotin synthetase 31.1 29 0.00099 31.6 3.1 34 199-234 27-62 (251)
16 2e0n_A Precorrin-2 C20-methylt 30.1 47 0.0016 29.8 4.3 33 269-305 5-37 (259)
17 3d19_A Conserved metalloprotei 29.6 1.9E+02 0.0064 27.1 8.4 29 234-262 239-267 (283)
18 1ve2_A Uroporphyrin-III C-meth 28.6 46 0.0016 29.3 3.9 32 269-304 3-34 (235)
19 1va0_A Uroporphyrin-III C-meth 28.4 46 0.0016 29.4 3.9 31 270-304 2-32 (239)
20 2z6r_A Diphthine synthase; met 28.0 57 0.0019 29.3 4.5 34 271-308 3-36 (265)
21 2npn_A Putative cobalamin synt 28.0 51 0.0017 29.4 4.1 33 270-306 4-36 (251)
22 3i24_A HIT family hydrolase; s 27.2 87 0.003 26.2 5.2 77 200-283 13-90 (149)
23 3i4t_A Diphthine synthase; nia 27.1 58 0.002 30.4 4.4 35 269-307 21-55 (292)
24 2oik_A Histidine triad (HIT) p 25.8 2.1E+02 0.0072 23.3 7.4 73 212-289 31-103 (154)
25 3ohe_A Histidine triad (HIT) p 25.4 1E+02 0.0035 25.2 5.2 67 212-285 24-92 (137)
26 3l5o_A Uncharacterized protein 24.8 95 0.0032 28.8 5.4 104 214-338 147-250 (270)
27 2zvb_A Precorrin-3 C17-methylt 24.0 65 0.0022 29.9 4.2 31 269-303 2-32 (295)
28 2ybo_A Methyltransferase; SUMT 23.6 64 0.0022 29.7 4.0 33 268-304 24-56 (294)
29 1s4d_A Uroporphyrin-III C-meth 23.3 65 0.0022 29.4 4.0 32 269-304 15-46 (280)
30 3nd1_A Precorrin-6A synthase/C 22.9 64 0.0022 29.7 3.9 34 270-307 23-56 (275)
31 1wyz_A Putative S-adenosylmeth 22.6 73 0.0025 28.4 4.1 34 269-306 3-39 (242)
32 3ndc_A Precorrin-4 C(11)-methy 22.1 88 0.003 28.3 4.6 33 270-306 5-37 (264)
33 2bky_X DNA/RNA-binding protein 22.0 45 0.0016 25.9 2.2 37 272-312 7-44 (89)
34 3ff4_A Uncharacterized protein 21.4 59 0.002 26.3 2.9 97 198-311 4-113 (122)
35 3h4t_A Glycosyltransferase GTF 20.5 51 0.0018 31.0 2.7 35 200-235 2-36 (404)
No 1
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=100.00 E-value=9.4e-66 Score=507.47 Aligned_cols=297 Identities=34% Similarity=0.561 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCCc
Q psy11662 8 AKQEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERATKFREKYVSRLHHLKQHPL 87 (346)
Q Consensus 8 ~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p~ 87 (346)
++|+|||+||+++|++|+++|++| |++++ |++||++|+++|.++|++|+++|.
T Consensus 40 ~~~~~w~~~~~~~~~~~~~~a~~~-~~~~~--------------------------a~~ra~~f~~~~~~~l~~l~~~p~ 92 (367)
T 1xfi_A 40 PNEISWINVFANSIPSFKKRAESD-ITVPD--------------------------APARAEKFAERYAGILEDLKKDPE 92 (367)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTC-TTSTT--------------------------HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhhHHHHHHhccC-CCCcc--------------------------HHHHHHHHHHHHHHHHHHHhhCcc
Confidence 899999999999999999999988 88888 999999999999999999999999
Q ss_pred cccccCCcCCCCC-chhhhHHHHHHHHhhhcCCCCcchHHhhHhhHHHHHHHHHHHHhHhhhhccCC---ch----h---
Q psy11662 88 LFCFDYDFSAYGN-LTVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMD---GK----S--- 156 (346)
Q Consensus 88 ~~~~~~~~~~~g~-~~~r~ll~~re~~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~---~~----~--- 156 (346)
+||. +++|.++++++++++.+|+.|||.++|+.+|+.|+++++.++.. ++.++ +. .
T Consensus 93 ---------~~g~~~~~r~~~~~~~~il~~~g~~DPf~~~K~~~n~~al~~l~~l~~~----l~~~~~~~~~l~~llr~a 159 (367)
T 1xfi_A 93 ---------SHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSL----SDAIEDDGKRLENLVRGI 159 (367)
T ss_dssp ---------GGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHH----HHTCCSHHHHHHHHHHHH
T ss_pred ---------ccCCcchHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHH----HHhcccchHHHHHHHHHH
Confidence 9999 89999999999999999999999999999999999999666554 33321 11 1
Q ss_pred -hhhh-cCChhhhHHH-------HH---HHhcCCCCccccHHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHHHH
Q psy11662 157 -IKAT-GGGAYKYANL-------IQ---EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELL 224 (346)
Q Consensus 157 -~~at-D~GA~~~~dl-------~~---~~l~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflreLl 224 (346)
+++. |||+....++ ++ +++..++|.+||++.|.+.++ +.++++|+||+||||+++|+|++||+++|+
T Consensus 160 l~GN~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~lvdd~~~l~~~L~-~~~~k~Vl~v~DNAG~Eiv~D~L~La~~Ll 238 (367)
T 1xfi_A 160 FAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWI-NKSWKKAVIFVDNSGADIILGILPFARELL 238 (367)
T ss_dssp HHHHHC---------------CCHHHHTTCSCCSSCSEECHHHHHHHHT-TTCCCEEEEECCBTTHHHHHTHHHHHHHHH
T ss_pred HHHhccccccccccccccccCCCHHHHHHHhhccCCCcCCHHHHHHHhc-ccCCCEEEEEecCCCchhhccHHHHHHHHH
Confidence 3332 9998653221 12 344578999999999999998 556799999999999779999999999999
Q ss_pred hCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEE
Q psy11662 225 RRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVL 304 (346)
Q Consensus 225 ~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIs 304 (346)
++|++|++++|++|+|||+|++|+..+|..+++-++.| .+++++++.|+++|+.+||++|.++|++|.+++.+|||||+
T Consensus 239 ~~g~kVvl~vK~~P~vnDvT~~D~~~~L~~l~~~~~~L-~~l~~g~l~vi~~G~~~~~~~l~~~s~el~~~l~~ADLVI~ 317 (367)
T 1xfi_A 239 RRGAQVVLAANELPSINDITCTELTEILSQLKDENGQL-LGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIV 317 (367)
T ss_dssp HTTCEEEEEEBSSCCTTBCBHHHHHHHHHHHC--CCEE-TTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEE
T ss_pred HcCCEEEEEECCcCceeeCCHHHHHHHHHHHHhcchhh-hhhccCcEEEEcCCCCCCCcChHHCCHHHHHHHccCCEEEE
Confidence 99999999999999999999999999988774433334 46689999999999999999999999999999999999999
Q ss_pred eccCCccccccccccccccchhhhhcCHHHHHHhCCccCcCC
Q psy11662 305 EGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMFSVA 346 (346)
Q Consensus 305 kGMGral~tN~~a~f~~~~lkLa~iK~~~vA~~Lg~~~~~~v 346 (346)
|||||.+|||+++.|.|+.++|+|+||+|||++||+++||||
T Consensus 318 KG~gNyl~t~~~~~f~~~i~~L~~iKc~~vA~~lg~~~~~~V 359 (367)
T 1xfi_A 318 EGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCV 359 (367)
T ss_dssp ESHHHHTTBSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEE
T ss_pred ECCCCCCccchhhhcCcchhHHHhhCcHHHHHHhCCCcCCEE
Confidence 999999999999999999999999999999999999999986
No 2
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=100.00 E-value=2.7e-43 Score=338.97 Aligned_cols=263 Identities=15% Similarity=0.128 Sum_probs=212.3
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCCcccc
Q psy11662 11 EYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERATKFREKYVSRLHHLKQHPLLFC 90 (346)
Q Consensus 11 ~~w~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p~~~~ 90 (346)
..++.|+-+++.+.++.+. +| ++...++.+.....|.+.. +|.
T Consensus 17 ~~C~~C~~~q~~~~~~~~~------~d---------------------------~~~~~~i~~~~~~~l~~~~-~~~--- 59 (299)
T 2g8l_A 17 YECLTCMANQCQRIVEMAT------QD---------------------------MDIRRRAMILAAKLLAKEY-NEN--- 59 (299)
T ss_dssp TTHHHHHHHHHHHHHHHHC------CC---------------------------HHHHHHHHHHHHHHHHHHS-STT---
T ss_pred hhhHHHHHHHHHHHHHHhC------CC---------------------------HHHHHHHHHHHHHHHHhhc-CCC---
Confidence 3478899888887777663 22 2345556666666665522 222
Q ss_pred ccCCcCCCCCchhhhHHHHHHHHhhhcCCCCcchHHhhHhhHHHHHHHHHHHHhHhhhhccCCchh----hhhh-cCChh
Q psy11662 91 FDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKS----IKAT-GGGAY 165 (346)
Q Consensus 91 ~~~~~~~~g~~~~r~ll~~re~~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~~~~----~~at-D~GA~ 165 (346)
.++++...++++.+++.+|+.|||.++|+.+|+.|+++++.++..+ .|++.... +++. |||+.
T Consensus 60 ---------~~p~~~~~~l~r~i~~~~g~~DPy~~~K~~~n~~al~~~~~~~~~l---~d~l~~~l~~sl~GN~~D~g~~ 127 (299)
T 2g8l_A 60 ---------AIPAIAGSLIFLELYKFLGNDDPFIEYKLKSEEMARKVADIIKRKL---KLDFELAVKLAIIGNVIDFSVG 127 (299)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHTCSCTTHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCTTSC
T ss_pred ---------CCcHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccc
Confidence 2466777899999999999999999999999999999997766543 12222111 3333 99962
Q ss_pred hh-HHHHH--HHhcCCCCccccHHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHHHHh-CCCeEEEEEecccccc
Q psy11662 166 KY-ANLIQ--EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLR-RGTKVILCANSAPALN 241 (346)
Q Consensus 166 ~~-~dl~~--~~l~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflreLl~-~Gs~V~l~v~s~P~LN 241 (346)
.. .++.+ ++...++|.+||++.|.+.+. ++++|+|++||||| +|+|. ||+++|++ .|.+|++++|++|++|
T Consensus 128 ~~~~d~~~~~~~~~~~~~~~dd~~~l~~~l~---~~~~v~~v~DNaGE-iv~Dl-~l~~~Ll~~~g~~V~~~vK~~P~vn 202 (299)
T 2g8l_A 128 FSPEDLEEEVEKMLKDKLYIDDSKELFEEVK---RAENILYITDNVGE-HYFDA-ILIEKIREISNAEVYIAGKEGPIIN 202 (299)
T ss_dssp SCHHHHHHHHHHHHTSCCSEECHHHHHHHHH---HCSEEEEECCBTTH-HHHHH-HHHHHHHHHCCCEEEEEEBSSCCTT
T ss_pred cCCCCHHHHHHHHhhcCCCcccHHHHHHHhc---cCCEEEEEecCCcc-HHHhH-HHHHHHHHhcCCeEEEEECCcCcee
Confidence 22 22222 345589999999999999998 57899999999998 88995 69999999 9999999999999999
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCccccccccccc-
Q psy11662 242 DVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFT- 320 (346)
Q Consensus 242 DvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral~tN~~a~f~- 320 (346)
|+|++|+..+ ++++ ...++++|+.+||++|+++|++|.+++++|||||+|||| ||++++.
T Consensus 203 DvT~~D~~~~-----~~~~---------~~~vi~~G~~~~g~~l~~~s~el~~~~~~adLVI~KG~~-----Nye~L~~d 263 (299)
T 2g8l_A 203 DATVEDLKRA-----GLEK---------LGKVISTGTRIVGVPLKLVSREFMEAFNKADVIIAKGQG-----NFETLSEI 263 (299)
T ss_dssp BCBHHHHHHT-----TGGG---------TSEEEECSSSSSSCCTTTSCHHHHHHHHHCSEEEEEHHH-----HHHHHTTS
T ss_pred eCCHHHHHHc-----Ccch---------hhhhhcCCCCCCCCChHhCCHHHHHHHhcCCEEEEeCCc-----hHhhhhcC
Confidence 9999999997 5542 359999999999999999999999999999999999999 8999884
Q ss_pred --cccchhhhhcCHHHHHHhCCccCcCC
Q psy11662 321 --CESLKLAVIKNRWLAQRLGGQMFSVA 346 (346)
Q Consensus 321 --~~~lkLa~iK~~~vA~~Lg~~~~~~v 346 (346)
++.++|+++||+|||++||++.+++|
T Consensus 264 ~~~~i~~L~~~Kc~~va~~lG~~~g~~V 291 (299)
T 2g8l_A 264 NDSRIFFLLKAKCPAVARELKVPKGALV 291 (299)
T ss_dssp CCTTEEEEEECCSHHHHHHHTSCTTCEE
T ss_pred CCCCeehhhhcCCHHHHHHhCCCCCCEE
Confidence 57899999999999999999999986
No 3
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=100.00 E-value=5.8e-41 Score=322.84 Aligned_cols=265 Identities=16% Similarity=0.152 Sum_probs=202.4
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhhhcCCccc
Q psy11662 10 QEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERATKFREKYVSRLHHLKQHPLLF 89 (346)
Q Consensus 10 ~~~w~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~f~~~~~~~L~~l~~~p~~~ 89 (346)
...++.|+-+++.+.++.+. +| ++...++.+.....|.+.. ++.
T Consensus 16 ~~~C~~C~~~q~~~~~~~~~------~d---------------------------~~~~~~i~~~~~~~l~~~~-~~~-- 59 (300)
T 2ffj_A 16 SPLCPSCLLGRVYYEAKLVT------DD---------------------------EDLISQCVDESLKILAENY-SSR-- 59 (300)
T ss_dssp ----CHHHHHHHHHHHHHHC------CC---------------------------HHHHHHHHHHHHHHHHHC-------
T ss_pred CcchHHHHHHHHHHHHHHhC------CC---------------------------HHHHHHHHHHHHHHHHhhc-CCC--
Confidence 34578898888887777663 22 2344555666666665411 122
Q ss_pred cccCCcCCCCCchhhhHHHHHHHHhhhcCCCCcchHHhhHhhHHHHHHHHHHHHhHhhhhccCCchh----hhhh-cCCh
Q psy11662 90 CFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKS----IKAT-GGGA 164 (346)
Q Consensus 90 ~~~~~~~~~g~~~~r~ll~~re~~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~~~~----~~at-D~GA 164 (346)
.++++..+.+++++++.+|+.|||.++|+.+|+.|+++++.+++.+...-+.+.... +++. |||+
T Consensus 60 ----------~~p~~~~~~lyr~i~~~~g~~Dpf~~~K~~~n~~a~~~l~~~~~~l~~~~~~l~~~l~~sl~GN~~D~g~ 129 (300)
T 2ffj_A 60 ----------PINAHLATRIHRRVYEILGVEDPYAEVKARANEVARQVLPLAKEIVEGSDDPFKTAVIVSIVGNNFDYGV 129 (300)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTCSCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHGGGCCC--
T ss_pred ----------CCcHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhHhhhccc
Confidence 235577789999999999999999999999999999999766554432212121111 3332 9997
Q ss_pred hhh----HHHHH--HHhcCCCCccccHHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHHHHhCCCeEEEEEeccc
Q psy11662 165 YKY----ANLIQ--EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVILCANSAP 238 (346)
Q Consensus 165 ~~~----~dl~~--~~l~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P 238 (346)
... .+..+ ++...++|.+||++.|.+.+. ++|+|++||||| +|+|++ |+++|+++|.+|++++|++|
T Consensus 130 ~~~~~~~~d~~~~~~~~~~~~~~~dd~~~~~~~l~-----~~v~~v~DNaGE-iv~Dll-l~~~Ll~~g~~V~~~vK~~P 202 (300)
T 2ffj_A 130 QGHKVVEEEFRDFLKRKVQEGLKINDTERIKELSS-----GKVVYLTDNAGE-IFFDTL-LMKEIKRRCEKLTAVVRGRP 202 (300)
T ss_dssp ----CHHHHHHHHHHHHHHHCCSEECHHHHHHHTT-----SEEEEECCBTTH-HHHHHH-HHHHHHTTCSEEEEEEBSSC
T ss_pred ccccccCCCHHHHHHHhhccCcCcCCHHHHHHHhc-----CCEEEEecCCcc-HHHHHH-HHHHHHHcCCeEEEEECCcC
Confidence 322 22222 344578999999999999886 599999999995 999998 99999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEec-CCCCcccCccccCHHHHHHHhcCCEEEEeccCCcccccccc
Q psy11662 239 ALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMET-AQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNA 317 (346)
Q Consensus 239 ~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~s-G~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral~tN~~a 317 (346)
++||+|++|+..+ ++++. ..+++| |+.+||++++++|++|.+++++|||||+|||| ||+.
T Consensus 203 ~vnDvT~~D~~~~-----~l~~~---------~~vi~~~G~~~~~~~l~~~s~el~~~l~~adLVI~KG~~-----Nyr~ 263 (300)
T 2ffj_A 203 IISDATIEDARLA-----RVDKI---------ADELLTNGKGAIGIIMDELPDETRKALEEADLIVAKGMA-----NYEC 263 (300)
T ss_dssp CTTBCBHHHHHHT-----THHHH---------SSEEEECSSCCSSCCGGGCCHHHHHHHHHCSEEEEESHH-----HHHH
T ss_pred ceecCCHHHHHHh-----hhhHH---------HhhhcCCCCCCCCcChHhCCHHHHHHHccCCEEEEECCh-----HHHH
Confidence 9999999999997 44421 278999 99999999999999999999999999999999 8877
Q ss_pred cc---ccccchhhhhcCHHHHHHhCCccCcCC
Q psy11662 318 KF---TCESLKLAVIKNRWLAQRLGGQMFSVA 346 (346)
Q Consensus 318 ~f---~~~~lkLa~iK~~~vA~~Lg~~~~~~v 346 (346)
+. .++.++|+++||+|||++||++.+++|
T Consensus 264 L~~~~~~~i~~L~~~Kc~vva~~lG~~~g~~v 295 (300)
T 2ffj_A 264 LSDGSLKPIAFLLTAKCEPVARDIGVNVGDMV 295 (300)
T ss_dssp HC---CCSEEEEEECCSHHHHHHHTSCTTCEE
T ss_pred HhCCCCcchHHHHHhCCHHHHHHhCCCCCCeE
Confidence 75 367799999999999999999999876
No 4
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=99.35 E-value=1.3e-14 Score=142.52 Aligned_cols=197 Identities=20% Similarity=0.222 Sum_probs=132.9
Q ss_pred CCCCchhhhH-HHHHHHHhhhcCCCCcchHHhhHhhHHHHHHHHHHHHhHhhhhccCCchhhhhhcCChhhhHHHHHHHh
Q psy11662 97 AYGNLTVRSL-LDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKL 175 (346)
Q Consensus 97 ~~g~~~~r~l-l~~re~~lr~~g~~Dpy~~~K~~eN~~Al~~l~~lr~~v~~~ld~l~~~~~~atD~GA~~~~dl~~~~l 175 (346)
+||..+.|+. |+++... .+-.+.-++|++|++..+.+++++++...+.. ....+.+||+||+++.+.|.+++
T Consensus 49 ~~~~~g~~~~~~~~~~~~---~~~~~g~l~F~~f~t~~~~~~l~~~~~~~~~~----~~~~i~aTGgGa~k~~~~~~~~~ 121 (360)
T 2i7n_A 49 AYGKTGIRDVHLELKNLT---MCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSS----LHTTLCATGGGAFKFEEDFRMIA 121 (360)
T ss_dssp BCSSSCEECGGGCEEEEE---C--CEEEEEEEEEEGGGHHHHHHHC----------------CEESTTTTGGGTTC----
T ss_pred cccccCcccccccccccc---ccCcCceEEEEEeehhhHHHHHHHHHHcCCCc----cCcEEEEECCcHHHHHHHHHHHh
Confidence 7887777542 2322111 22245789999999999999997775542211 11248889999999998888777
Q ss_pred cCCCCccccHHHHHHHhcC-----CCCCceEEEEecCCC-cce------ecCchHHHHHHHhCCCeEEEEE---------
Q psy11662 176 GLSPWLVDDLDDWLDRLNN-----GPPHSKAAIFVDNSG-IDI------VLGILPFARELLRRGTKVILCA--------- 234 (346)
Q Consensus 176 ~~r~~~vDd~d~l~~~l~~-----~~~~k~vl~f~DNsG-eDI------V~d~lPflreLl~~Gs~V~l~v--------- 234 (346)
......+|++++...++.. ......++++.+..- +.. .-++|||+ |+++|++|+++.
T Consensus 122 g~~~~k~dE~~c~~~G~~~l~~~~~~~~~e~~t~~~~~~~~~~~~~~~~~~~~~Pyl--lVnIGsGvSiikv~~~~~f~r 199 (360)
T 2i7n_A 122 DLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPML--LVNMGSGVSILAVYSKDNYKR 199 (360)
T ss_dssp ---CCBCCHHHHHHHHHHHHHHHCBTTBCSEEEEESTTCTTTCEEEEECCSSCCSEE--EEEESSSEEEEEEEETTEEEE
T ss_pred CCCcceecHHHHHHHHHHHHhcccccCCceeEEeccccccccccccccccccCCceE--EEEeCCCcEEEEEcCCCCEEE
Confidence 7777889999999999751 122335677765321 000 13458999 999999999884
Q ss_pred ecccccchhhHHHHHHHHHHHhhHHHHHHHhh-cCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCcc
Q psy11662 235 NSAPALNDVTYSELVVLLRQAATVCHIIANAL-SSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTV 311 (346)
Q Consensus 235 ~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~-~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral 311 (346)
++|.+++++|++||..+|+++.++|+++++|. |++..+++.+|++|++ ++.+.+.. .|++-+ -+|+++
T Consensus 200 vgG~siGGGTflGL~~lLtg~~~~dEl~~lA~~Gd~~~vDllV~DIYg~-~y~~~gL~-------~~~~AS-sFGk~~ 268 (360)
T 2i7n_A 200 VTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGG-DYERFGLQ-------GSAVAS-SFGNMM 268 (360)
T ss_dssp EEEESCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSEEHHHHHSS-CBGGGTBC-------TTSEEE-TTTTTT
T ss_pred eccccCccHhHHHHHHHHhCCCCHHHHHHHHHcCCCCcccceeeecccC-cccccCCC-------ccceee-hhhhHh
Confidence 55679999999999999999999999999996 7887899999999986 88765543 333433 588764
No 5
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.1e-11 Score=125.49 Aligned_cols=130 Identities=24% Similarity=0.357 Sum_probs=101.7
Q ss_pred CCCCccccHHHHHHHhcC-----CCCCceEEEEecCCCcceecCchHHHHHHHhCC--CeEEEEEecccc-cchhhHHHH
Q psy11662 177 LSPWLVDDLDDWLDRLNN-----GPPHSKAAIFVDNSGIDIVLGILPFARELLRRG--TKVILCANSAPA-LNDVTYSEL 248 (346)
Q Consensus 177 ~r~~~vDd~d~l~~~l~~-----~~~~k~vl~f~DNsGeDIV~d~lPflreLl~~G--s~V~l~v~s~P~-LNDvT~~eL 248 (346)
.....+||++.+.+.|.. +...++|.|++||||..+++|.+ |++.|++.| ++|++.|++.|. +||+|..|+
T Consensus 221 ~~~ilvdD~~~l~~~L~~~k~~~~~~~~rVdiVlDNaGfEl~~Dl~-Lae~Ll~~gla~~V~~hvK~~PwfVSDvT~~D~ 299 (471)
T 3pt1_A 221 ESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLM-LAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDF 299 (471)
T ss_dssp HTTEEEECHHHHHHHHHHHHHCSSCCCCEEEEECCBSTHHHHHHHH-HHHHHHHHTSCSEEEEEEBSSCCTTTBCBHHHH
T ss_pred hcCccccCHHHHHHHHHHhhccccCCCceEEEEEeCCcchhhHHHH-HHHHHHHcCCCcEEEEEecCCCceeecCcHHHH
Confidence 567889999999988861 12245899999999944899998 999998866 699999999996 999999999
Q ss_pred HHHHHHHhhH------------HH-------HHHHhhcCCceEEEecCC-CCcccCccccC--------HHHHHHHhcCC
Q psy11662 249 VVLLRQAATV------------CH-------IIANALSSGRLVAMETAQ-AGPCLDLSRLG--------RDLATELSSID 300 (346)
Q Consensus 249 ~~llt~~~~~------------d~-------~l~~A~~~~~l~vv~sG~-~~pg~dl~~~s--------~el~~~~~~aD 300 (346)
..+|..+.+- ++ .+...+.+|+.++-..-- .+| .++.+++ |++.+.+.+++
T Consensus 300 ~~~l~~L~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~G~~~~~~~~FWT~p-~~y~~Mp~~~~~~~~p~L~~~L~~S~ 378 (471)
T 3pt1_A 300 DILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTE-LDYWNLDANETKYHGSILHKDLQKSN 378 (471)
T ss_dssp HHHHHHHHCTTTSCCCSTTSHHHHHHHHHHHHHHHHHHHTSEEEEECGGGGSS-CCGGGSSTTCCSSSHHHHHHHHTTCS
T ss_pred HHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHCCCEEEeCCCccCCC-cchhhCChhhcccCCHHHHHHHhhCc
Confidence 9999888752 11 233344788888876444 333 4666766 59999999999
Q ss_pred EEEEeccC
Q psy11662 301 LIVLEGMG 308 (346)
Q Consensus 301 LVIskGMG 308 (346)
|||.||=-
T Consensus 379 LVIFKGDL 386 (471)
T 3pt1_A 379 LVIFKGDL 386 (471)
T ss_dssp EEEEEHHH
T ss_pred EEEEecch
Confidence 99999944
No 6
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=97.44 E-value=1.6e-05 Score=75.88 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=88.1
Q ss_pred HhhHhhHHHHHHHHHHHHhHhhhhccCCchhhhhhcCChhhhHHHHHHHhcCCCCccccHHHHHHHhcCCCCCceEEEEe
Q psy11662 126 FVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFV 205 (346)
Q Consensus 126 ~K~~eN~~Al~~l~~lr~~v~~~ld~l~~~~~~atD~GA~~~~dl~~~~l~~r~~~vDd~d~l~~~l~~~~~~k~vl~f~ 205 (346)
+++++...+.++++.+. .. +...+.+|++|++++.+ .+......++|+++...+... +.
T Consensus 44 ~~~~~~~~~~~~l~~l~------~~--~~~~i~~TG~G~~~~~~----~l~~~~~~v~Ei~~~~~Ga~~---------l~ 102 (287)
T 2ews_A 44 FKTELTKNIDQVVEWLN------QQ--QIEKLCLTGGNAGVIAE----NINIPAQIFVEFDAASQGLGI---------LL 102 (287)
T ss_dssp EEEEEGGGHHHHHHHHH------TS--CCSEEEEESTTHHHHHT----TSSSCCEECCHHHHHHHHHHH---------HH
T ss_pred EEEechHHHHHHHHHhc------cc--CceEEEEEChhHHhHhH----hhCCCcceeehhHHHHHHHHH---------hc
Confidence 44555555666663331 11 11237789999988754 333344568999999888751 00
Q ss_pred cCCCcceecCchHHHHHHHhCCCeEEEE--------EecccccchhhHHHHHHHHHHHhhHHHHHHHhh-cCCceEEEec
Q psy11662 206 DNSGIDIVLGILPFARELLRRGTKVILC--------ANSAPALNDVTYSELVVLLRQAATVCHIIANAL-SSGRLVAMET 276 (346)
Q Consensus 206 DNsGeDIV~d~lPflreLl~~Gs~V~l~--------v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~-~~~~l~vv~s 276 (346)
.+.+. +++|++ ++++|++++++ .+++.+++++|++|+..+++++.+++++.++|. +++..+++.+
T Consensus 103 ~~~~~----~~~~~~--vIdIGg~dsii~v~~~~f~r~~g~aaGgGtFl~l~a~ll~~~~~~el~~lA~~g~~~~vDl~v 176 (287)
T 2ews_A 103 KEQGH----DLADYI--FANVGTGTSLHYFDGQSQRRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKV 176 (287)
T ss_dssp HHTTC----CCSCEE--EEEESSSEEEEEECSSCEEEEEEESCSHHHHHHHHHHHHCCCCHHHHHHHHTTCCCTTTCEET
T ss_pred ccCCC----CcCCeE--EEEeCCCeEEEEEcCCceEEcCccccchhhHHHHHHHHhCCCCHHHHHHHHHcCCccccccch
Confidence 11111 234555 77888887755 466889999999999999999999999999997 7778899999
Q ss_pred CCCCcc
Q psy11662 277 AQAGPC 282 (346)
Q Consensus 277 G~~~pg 282 (346)
|++||+
T Consensus 177 ~DIy~~ 182 (287)
T 2ews_A 177 RHIYKD 182 (287)
T ss_dssp TTC---
T ss_pred hhhcCC
Confidence 999985
No 7
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=51.22 E-value=18 Score=28.81 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=28.6
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEec
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskG 306 (346)
+.+.++.+| || |++.++....+++++||+|+...
T Consensus 6 g~ly~VG~G---pG-d~~~lT~~a~~~L~~advv~~~~ 39 (117)
T 3hh1_A 6 GTLYVVATP---LG-NLDDMTFRAVNTLRNAGAIACED 39 (117)
T ss_dssp CCEEEEEEC---SS-CGGGSCHHHHHHHHHCSEEEESC
T ss_pred ceEEEEeCC---CC-CHHHhhHHHHHHHHhCCEEEEec
Confidence 567888888 44 67789999999999999999864
No 8
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=42.48 E-value=38 Score=30.62 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=52.0
Q ss_pred CceEEEEec--CCCcceecCchHHHHHHHhCCCeEEEEE--ecccccchhhHHHHHHHHHHHh----hHHHHHHHhhcCC
Q psy11662 198 HSKAAIFVD--NSGIDIVLGILPFARELLRRGTKVILCA--NSAPALNDVTYSELVVLLRQAA----TVCHIIANALSSG 269 (346)
Q Consensus 198 ~k~vl~f~D--NsGeDIV~d~lPflreLl~~Gs~V~l~v--~s~P~LNDvT~~eL~~llt~~~----~~d~~l~~A~~~~ 269 (346)
.+.+++.+= ++|--+|- .- +++.|.++|.+|.+.. .+++-=.+....|...++..+. +... + +
T Consensus 21 ~k~i~ItgT~t~vGKT~vs-~g-L~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~--~-----~ 91 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCA-RL-LAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTL--K-----D 91 (242)
T ss_dssp CEEEEEEESSTTSSHHHHH-HH-HHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCH--H-----H
T ss_pred CcEEEEEeCCCCCcHHHHH-HH-HHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCCh--H-----H
Confidence 345555553 56654431 12 6788999999999883 2222110113345544433222 2211 0 0
Q ss_pred ceEEEecCCCCc-----------ccCccccCHHHHHHHhcCCEEEEeccC
Q psy11662 270 RLVAMETAQAGP-----------CLDLSRLGRDLATELSSIDLIVLEGMG 308 (346)
Q Consensus 270 ~l~vv~sG~~~p-----------g~dl~~~s~el~~~~~~aDLVIskGMG 308 (346)
...++.....+| -++++++-..+.++..++|+||+||-|
T Consensus 92 ~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~~~~D~vlIEGag 141 (242)
T 3qxc_A 92 ISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAG 141 (242)
T ss_dssp HCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGGGTCSEEEEECCS
T ss_pred eeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCEEEEECCC
Confidence 001222211111 245666666666666779999999977
No 9
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=41.21 E-value=1.2e+02 Score=24.38 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCCCceEEEEecCCCcceecCchHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHH
Q psy11662 185 LDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIAN 264 (346)
Q Consensus 185 ~d~l~~~l~~~~~~k~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~ 264 (346)
++|+.-++..+....+++ +-|..-. ++++..|.. .|.=+++-.+--+.+.|.|-+++..++.-+..+-..++.
T Consensus 5 ~~CiFC~i~~~e~p~~iV-~e~~~~~-af~d~~P~~-----pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~ 77 (138)
T 3p0t_A 5 MASIFTKIINRELPGRFV-YEDDDVV-AFLTIEPMT-----QGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCK 77 (138)
T ss_dssp HHHHHHHHHTTSSCCCEE-EECSSEE-EEECSSCSS-----TTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHhcCCCCcCEE-EeCCCEE-EEecCCCCC-----CcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555543222222443 3343333 567887764 565455556667889999999999998888888777776
Q ss_pred hhcCCceEEEecCCCCccc
Q psy11662 265 ALSSGRLVAMETAQAGPCL 283 (346)
Q Consensus 265 A~~~~~l~vv~sG~~~pg~ 283 (346)
+.+....-+...|+..|=+
T Consensus 78 ~~~~~~~n~~~~gq~v~Hl 96 (138)
T 3p0t_A 78 AFRTERSGLIIAGLEVPHL 96 (138)
T ss_dssp HHTCSEEEEEECCSSCSSC
T ss_pred hcCCCCCcEEECCcccCEE
Confidence 6665544444556654433
No 10
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=34.74 E-value=40 Score=30.29 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=28.2
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEec
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskG 306 (346)
+++.++.+|-+ |++.++.+..+++++||+|+..+
T Consensus 5 g~l~iVG~GpG----~~~~lT~~A~~~L~~advv~~~~ 38 (253)
T 4e16_A 5 NKVHFVGAGPG----DKELITLKGYKLLSNADVVIYAG 38 (253)
T ss_dssp CCEEEEECBSS----CGGGSCHHHHHHHHHCSEEEECT
T ss_pred ceEEEEeCCCC----CHHHHHHHHHHHHHhCCEEEEeC
Confidence 56778888744 56789999999999999999864
No 11
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=33.65 E-value=36 Score=29.70 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=28.5
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEecc
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGM 307 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGM 307 (346)
+.+.++.+|-+ |++.++.+..+++++||+|+...-
T Consensus 3 g~l~iVG~GpG----~~~~lT~~A~~~L~~advv~~~~~ 37 (232)
T 2qbu_A 3 GKLIGVGVGPG----DSELLTLRAVNVLRSVPVICAPRS 37 (232)
T ss_dssp CCEEEEECBSS----CGGGSBHHHHHHHHHCSEEECCBC
T ss_pred ceEEEEEcCCC----ChHHHHHHHHHHHHhCCEEEEeCC
Confidence 45678888844 557899999999999999997654
No 12
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=32.32 E-value=36 Score=31.84 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=28.3
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEec
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskG 306 (346)
+.+.+|.+| || |++.++....+++.+||+|+.++
T Consensus 16 G~LylVG~G---pG-~~~~lT~rA~~~L~~aDvI~~ed 49 (296)
T 3kwp_A 16 GHLYLVPTP---IG-NLDDMTFRAVKTLTAVDLIAAED 49 (296)
T ss_dssp CEEEECCBC---SS-CGGGCCHHHHHHHHHSSEEEESC
T ss_pred ceEEEeccC---CC-CccchhhHHHHHHhHhhhhhhhc
Confidence 456777777 44 67799999999999999999976
No 13
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=32.25 E-value=41 Score=30.20 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=26.5
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEe
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLE 305 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIsk 305 (346)
+...++..| || |++.++.+..+++++||+|+..
T Consensus 9 ~~~~~vG~G---PG-d~~lLT~rA~~~L~~AdvI~g~ 41 (251)
T 3nut_A 9 GWVTVAGLG---PG-REDLVTPEVTAALAEATDIVGY 41 (251)
T ss_dssp CEEEEEECB---SS-CGGGSCHHHHHHHHHCSEEEEC
T ss_pred ccEEEEEEC---CC-CHHHHHHHHHHHHHhCCEEEEc
Confidence 445666666 55 7789999999999999999943
No 14
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=31.15 E-value=44 Score=30.29 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=28.0
Q ss_pred CCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEec
Q psy11662 268 SGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 268 ~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskG 306 (346)
.+++.+|.+|-+ |++.++.+..+++++||+|+...
T Consensus 12 ~g~l~vVG~GpG----d~~lLTlrA~~~L~~ADvI~~~~ 46 (268)
T 1vhv_A 12 MSLLTFVGLGLW----DVKDISVKGLEAVREADEVYVEY 46 (268)
T ss_dssp -CEEEEEECBSS----SGGGSBHHHHHHHHHCSEEEEEC
T ss_pred CCEEEEEECCCC----CHHHHHHHHHHHHhcCCEEEECC
Confidence 356778888744 56789999999999999999764
No 15
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=31.14 E-value=29 Score=31.59 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=21.7
Q ss_pred ceEEEEe-c-CCCcceecCchHHHHHHHhCCCeEEEEE
Q psy11662 199 SKAAIFV-D-NSGIDIVLGILPFARELLRRGTKVILCA 234 (346)
Q Consensus 199 k~vl~f~-D-NsGeDIV~d~lPflreLl~~Gs~V~l~v 234 (346)
+.+++-+ | ++|--+|- .- +++.|.++|.+|.+..
T Consensus 27 ~~i~Itgt~t~vGKT~vt-~g-L~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVC-AA-LASAARQAGIDVAVCK 62 (251)
T ss_dssp EEEEEEESSTTSCHHHHH-HH-HHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHH-HH-HHHHHHHCCCeEEEEe
Confidence 4444444 3 56654432 12 6788999999998874
No 16
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=30.08 E-value=47 Score=29.77 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=27.5
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEe
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLE 305 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIsk 305 (346)
+.+.+|.+|-+ |++.++.+..+++++||+|+..
T Consensus 5 g~l~iVG~GpG----~~~~LT~~A~~~L~~advV~~~ 37 (259)
T 2e0n_A 5 GSIISVSLGPG----DPGLITVKALSQLREADVIYYP 37 (259)
T ss_dssp CEEEEEECBSS----CGGGSBHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEeCCC----ChHHHHHHHHHHHHhCCEEEEe
Confidence 45678888844 5578999999999999999986
No 17
>3d19_A Conserved metalloprotein; structural genomics, unknown function, PSI-2, protein struct initiative, nysgxrc; 2.30A {Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Probab=29.59 E-value=1.9e+02 Score=27.12 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=23.2
Q ss_pred EecccccchhhHHHHHHHHHHHhhHHHHH
Q psy11662 234 ANSAPALNDVTYSELVVLLRQAATVCHII 262 (346)
Q Consensus 234 v~s~P~LNDvT~~eL~~llt~~~~~d~~l 262 (346)
-.-.|.+-|=++.|++.-|..++.+...+
T Consensus 239 s~l~PllaDHm~REa~~YL~~L~~~~~~~ 267 (283)
T 3d19_A 239 SIIHPLLADHVFREADRFLEIIDMYDVHL 267 (283)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcCcHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999988888888877644
No 18
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=28.58 E-value=46 Score=29.30 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=26.4
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEE
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVL 304 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIs 304 (346)
+.+.++.+|-+ |++.++.+..+++++||+|+.
T Consensus 3 g~l~vVG~GpG----~~~~LT~~A~~~L~~advv~~ 34 (235)
T 1ve2_A 3 GKVYLVGAGFG----GPEHLTLKALRVLEVAEVVLH 34 (235)
T ss_dssp CEEEEEECBSS----SGGGSBHHHHHHHHHCSEEEE
T ss_pred cEEEEEeeCCC----CHHHHHHHHHHHHHhCCEEEE
Confidence 45677888744 557899999999999999997
No 19
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=28.35 E-value=46 Score=29.37 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=25.5
Q ss_pred ceEEEecCCCCcccCccccCHHHHHHHhcCCEEEE
Q psy11662 270 RLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVL 304 (346)
Q Consensus 270 ~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIs 304 (346)
.+.++.+|-+ |++.++.+..+++++||+|+.
T Consensus 2 ~l~iVG~GpG----~~~~LT~~A~~~L~~advI~~ 32 (239)
T 1va0_A 2 RVYLVGAGPG----DPELLTLKAYRLLKEAPVVLY 32 (239)
T ss_dssp EEEEEECBSS----CGGGSBHHHHHHHHHCSEEEE
T ss_pred EEEEEecCCC----CHHHHHHHHHHHHHhCCEEEE
Confidence 4567777744 567899999999999999997
No 20
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=28.00 E-value=57 Score=29.30 Aligned_cols=34 Identities=12% Similarity=-0.053 Sum_probs=27.0
Q ss_pred eEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccC
Q psy11662 271 LVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMG 308 (346)
Q Consensus 271 l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMG 308 (346)
+.++..|- | |++.++.+..+++++||+|+.++-+
T Consensus 3 l~iVG~Gp---G-~~~~LT~~A~~~L~~advv~~~~~~ 36 (265)
T 2z6r_A 3 LYFIGLGL---Y-DERDITVKGLEIAKKCDYVFAEFYT 36 (265)
T ss_dssp EEEEECBS---S-SGGGSBHHHHHHHHHCSEEEEECSS
T ss_pred EEEEccCC---C-ChHhcCHHHHHHHHhCCEEEEeccc
Confidence 45666664 4 6678999999999999999987554
No 21
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=27.98 E-value=51 Score=29.42 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=26.9
Q ss_pred ceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEec
Q psy11662 270 RLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 270 ~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskG 306 (346)
.+.+|..| || |++.++.+..+++++||+|+..+
T Consensus 4 ~l~vVG~G---pG-d~~lLTl~A~~~L~~Advv~~~~ 36 (251)
T 2npn_A 4 TIYVIGIG---TG-SPEFLTLQAISGLRHAQAIVALD 36 (251)
T ss_dssp EEEEEECB---SS-CGGGCCHHHHHHHHHCSEEEEEC
T ss_pred EEEEEEeC---CC-ChhHhhHHHHHHHHhCCEEEEeC
Confidence 45677777 44 66799999999999999999853
No 22
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=27.21 E-value=87 Score=26.18 Aligned_cols=77 Identities=8% Similarity=0.064 Sum_probs=48.4
Q ss_pred eEEEEecCCCcceecCchHHHHHHHhCCCeEEEEEe-cccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCC
Q psy11662 200 KAAIFVDNSGIDIVLGILPFARELLRRGTKVILCAN-SAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQ 278 (346)
Q Consensus 200 ~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~v~-s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~ 278 (346)
+.++.-+.... ++++..|.. .| -+.+..+ --+.|.|.|-++...++..+..+-..+..+.+-....+...|+
T Consensus 13 ~~~v~~~~~~~-v~L~~~p~~-----pG-h~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq 85 (149)
T 3i24_A 13 CIVLGNLPLCK-VLLIKEDIG-----PW-LILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGN 85 (149)
T ss_dssp EEEEEECSSEE-EEEECBSST-----TE-EEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCS
T ss_pred CEEEEECCCEE-EEEcCCCCC-----CE-EEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhC
Confidence 33333344444 556665554 34 2333333 6788999999999999888888888888777655544445555
Q ss_pred CCccc
Q psy11662 279 AGPCL 283 (346)
Q Consensus 279 ~~pg~ 283 (346)
.-|=+
T Consensus 86 ~V~Hl 90 (149)
T 3i24_A 86 LVPQL 90 (149)
T ss_dssp SCCSC
T ss_pred CCCEE
Confidence 44433
No 23
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=27.08 E-value=58 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=28.2
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEecc
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGM 307 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGM 307 (346)
+.+.+|.+|- | |++.++....+++++||+|+.+.-
T Consensus 21 ~~l~lVG~Gp---G-d~~~LT~rA~~~L~~ADvV~~e~~ 55 (292)
T 3i4t_A 21 SMLYIIGLGL---Y-DEKDITVRGLEAVKSCDLVFLEHY 55 (292)
T ss_dssp CEEEEEECBS---S-SGGGSCHHHHHHHHHCSEEEECGG
T ss_pred CEEEEEEECC---C-ChHHhhHHHHHHHHhCCEEEEecc
Confidence 4567777774 4 567899999999999999998765
No 24
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=25.79 E-value=2.1e+02 Score=23.33 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=49.8
Q ss_pred eecCchHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCccccC
Q psy11662 212 IVLGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLG 289 (346)
Q Consensus 212 IV~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl~~~s 289 (346)
++++..|.. .|.-.++-.+--+.+.|.|-+++..+..-+..+-..++.+.+.....++..|+..|=+-+.-+|
T Consensus 31 a~~d~~p~~-----pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~ni~~~gq~v~HlHiHiiP 103 (154)
T 2oik_A 31 VVHVENQDY-----PGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLASLGNMTPHVHWHVIP 103 (154)
T ss_dssp EEECCCTTC-----TTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSSCSCEEEEEE
T ss_pred EEEcCCCCC-----CeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEhHHhCCCCCEEEEEEeC
Confidence 556777653 5544455566678999999999999888888888888777765555566666655544443333
No 25
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=25.39 E-value=1e+02 Score=25.21 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=45.4
Q ss_pred eecCchHHHHHHHhCCCeEEEEE--ecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCc
Q psy11662 212 IVLGILPFARELLRRGTKVILCA--NSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDL 285 (346)
Q Consensus 212 IV~d~lPflreLl~~Gs~V~l~v--~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl 285 (346)
++++..|.. .| .+++. +--+.|.|.|-++...++..+..+...+..+.+-....+...|+.-|=+-+
T Consensus 24 v~l~~~p~~-----pG--h~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~HlH~ 92 (137)
T 3ohe_A 24 VLLMNDNTW-----PW--VILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHL 92 (137)
T ss_dssp EEEESCTTS-----CE--EEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSCCE
T ss_pred EEEcCCCCC-----CE--EEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCcCCEEEE
Confidence 555555544 34 33443 567899999999999998888888888887776555555566665444333
No 26
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=24.78 E-value=95 Score=28.82 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=63.2
Q ss_pred cCchHHHHHHHhCCCeEEEEEecccccchhhHHHHHHHHHHHhhHHHHHHHhhcCCceEEEecCCCCcccCccccCHHHH
Q psy11662 214 LGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRDLA 293 (346)
Q Consensus 214 ~d~lPflreLl~~Gs~V~l~v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~~~~~l~vv~sG~~~pg~dl~~~s~el~ 293 (346)
.|-+|+++.+++.+.++.++=+. |--+|..-+....+|..|+ .|+-||+. -.+..=+.+.
T Consensus 147 IG~fP~i~~~~~~~~~l~V~E~~-p~~g~~p~~~~~~~lp~~D---------------~viiTgst----lvN~Tl~~lL 206 (270)
T 3l5o_A 147 VGHFPHLESLLEPICDLSILEWS-PEEGDYPLPASEFILPECD---------------YVYITCAS----VVDKTLPRLL 206 (270)
T ss_dssp ESCCTTHHHHHTTTSEEEEEESS-CCTTCEEGGGHHHHGGGCS---------------EEEEETHH----HHHTCHHHHH
T ss_pred ECCchhHHHHHhcCCCEEEEECC-CCCCCCChhHHHHhhccCC---------------EEEEEeeh----hhcCCHHHHH
Confidence 45568999999999998887653 6566665556666654443 55666643 2234445666
Q ss_pred HHHhcCCEEEEeccCCccccccccccccccchhhhhcCHHHHHHh
Q psy11662 294 TELSSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRL 338 (346)
Q Consensus 294 ~~~~~aDLVIskGMGral~tN~~a~f~~~~lkLa~iK~~~vA~~L 338 (346)
+...++..||+-|=.=.+..-+. .+..+.+=-.+|+++..+.+.
T Consensus 207 ~~~~~a~~vvl~GPStp~~P~lf-~~Gv~~laG~~V~d~~~~~~~ 250 (270)
T 3l5o_A 207 ELSRNARRITLVGPGTPLAPVLF-EHGLQELSGFMVKDNARAFRI 250 (270)
T ss_dssp HHTTTSSEEEEESTTCCCCGGGG-GTTCSEEEEEEESCHHHHHHH
T ss_pred hhCCCCCEEEEECCCchhhHHHH-hcCcCEEEEEEEcCHHHHHHH
Confidence 66777777777665444443332 233445555566777666655
No 27
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=24.03 E-value=65 Score=29.94 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.5
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEE
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIV 303 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVI 303 (346)
+.+.+|.+|-. |.+.++.+..+++++||+|+
T Consensus 2 G~l~lVG~GpG----dp~lLT~rA~~~L~~ADvVi 32 (295)
T 2zvb_A 2 GELFLVGMGPG----DLPGLTQRAREALEGAEVVI 32 (295)
T ss_dssp CEEEEEECBTS----SGGGSCHHHHHHHHHCSEEE
T ss_pred CEEEEEECCCC----ChHHHHHHHHHHHHcCCEEE
Confidence 34677777744 56789999999999999999
No 28
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=23.56 E-value=64 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=27.6
Q ss_pred CCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEE
Q psy11662 268 SGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVL 304 (346)
Q Consensus 268 ~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIs 304 (346)
.+.+.+|.+|-+ |++.++.+..+++++||+|+.
T Consensus 24 ~g~l~lVG~GpG----dp~lLTlrA~~~L~~ADvV~~ 56 (294)
T 2ybo_A 24 AGSVALVGAGPG----DPGLLTLRAWALLQQAEVVVY 56 (294)
T ss_dssp TTCEEEEEEESS----CGGGSCHHHHHHHTTCSEEEE
T ss_pred CCEEEEEecCCC----CHHHHHHHHHHHHHcCCEEEE
Confidence 356788888844 557899999999999999997
No 29
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=23.30 E-value=65 Score=29.39 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=26.8
Q ss_pred CceEEEecCCCCcccCccccCHHHHHHHhcCCEEEE
Q psy11662 269 GRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVL 304 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIs 304 (346)
+.+.+|.+|- | |++.++.+..+++++||+|+.
T Consensus 15 g~l~lVG~Gp---G-d~~lLTl~A~~~L~~ADvV~~ 46 (280)
T 1s4d_A 15 GSVWLVGAGP---G-DPGLLTLHAANALRQADVIVH 46 (280)
T ss_dssp SCEEEEECBS---S-CTTSSBHHHHHHHHHCSEEEE
T ss_pred cEEEEEecCC---C-CHHHHHHHHHHHHHhCCEEEE
Confidence 5677888874 4 567899999999999999997
No 30
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=22.92 E-value=64 Score=29.74 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=28.2
Q ss_pred ceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEecc
Q psy11662 270 RLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGM 307 (346)
Q Consensus 270 ~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGM 307 (346)
.+.+|.+| || |++.++....+++++||+|+...-
T Consensus 23 ~ly~VG~G---PG-dpellTlrA~~~L~~aDvI~~~~t 56 (275)
T 3nd1_A 23 ELSLIGIG---TG-NPRHITGQAVDAMNAADLILIPLK 56 (275)
T ss_dssp EEEEEECB---SS-CGGGCBHHHHHHHHHCSEEEEECC
T ss_pred EEEEEEeC---CC-CHHHHHHHHHHHHHhCCEEEecCC
Confidence 45666666 55 778999999999999999999764
No 31
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=22.57 E-value=73 Score=28.35 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=26.5
Q ss_pred CceEEEecCCCCcccCcc---ccCHHHHHHHhcCCEEEEec
Q psy11662 269 GRLVAMETAQAGPCLDLS---RLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 269 ~~l~vv~sG~~~pg~dl~---~~s~el~~~~~~aDLVIskG 306 (346)
+.+.++.+| || |++ .++....+++++||+|+.+.
T Consensus 3 G~ly~VG~G---pG-d~~~~dLlTlrA~~~L~~aDvI~~~~ 39 (242)
T 1wyz_A 3 TALYLLPVT---LG-DTPLEQVLPSYNTEIIRGIRHFIVED 39 (242)
T ss_dssp CSEEEECCC---SS-SSCHHHHSCTHHHHHHTTCCEEEESC
T ss_pred ceEEEEecC---CC-CCcccCccCHHHHHHHHhCCEEEEeC
Confidence 456777777 44 455 49999999999999999854
No 32
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=22.09 E-value=88 Score=28.33 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=26.6
Q ss_pred ceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEec
Q psy11662 270 RLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEG 306 (346)
Q Consensus 270 ~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskG 306 (346)
.+.+|..| || |++.++.+..+++++||+|+..+
T Consensus 5 ~l~iVG~G---pG-~~~lLT~~A~~~L~~AdvV~~~~ 37 (264)
T 3ndc_A 5 TVHFIGAG---PG-AADLITIRGRDLIASCPVCLYAG 37 (264)
T ss_dssp CEEEEECB---SS-CGGGSBHHHHHHHHHCSEEEECS
T ss_pred EEEEEEcC---CC-ChHHHHHHHHHHHHcCCEEEEEC
Confidence 45677776 44 66789999999999999999854
No 33
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=22.01 E-value=45 Score=25.94 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=22.9
Q ss_pred EEEecCCCCcccCccccCHHHHHHHh-cCCEEEEeccCCccc
Q psy11662 272 VAMETAQAGPCLDLSRLGRDLATELS-SIDLIVLEGMGRTVH 312 (346)
Q Consensus 272 ~vv~sG~~~pg~dl~~~s~el~~~~~-~aDLVIskGMGral~ 312 (346)
.++-+|+. |-.+| +..- ...+. .++=|++||||++|.
T Consensus 7 ~iv~vg~k-pv~nY--V~~~-~~~ln~g~~eV~ikA~G~aIs 44 (89)
T 2bky_X 7 EIVVRKTK-NVEDH--VLDV-IVLFNQGIDEVILKGTGREIS 44 (89)
T ss_dssp EEECCTTS-CHHHH--HHHH-HHHHHTTCCEEEEEEETTHHH
T ss_pred CEEEECCC-CHHHH--HHHH-HHHHhCCCCEEEEEEechHHH
Confidence 45556664 53332 3322 23444 489999999999874
No 34
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=21.43 E-value=59 Score=26.29 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=52.7
Q ss_pred CceEEEEec--CCCcceecCchHHHHHHHhCCCeEEEE---------EecccccchhhHHHHHHHHHHHhhHHHHHHHhh
Q psy11662 198 HSKAAIFVD--NSGIDIVLGILPFARELLRRGTKVILC---------ANSAPALNDVTYSELVVLLRQAATVCHIIANAL 266 (346)
Q Consensus 198 ~k~vl~f~D--NsGeDIV~d~lPflreLl~~Gs~V~l~---------v~s~P~LNDvT~~eL~~llt~~~~~d~~l~~A~ 266 (346)
.+++.+++- |.+. .+-. .++.|++.|..|+-+ ...-|+|.|+.--|+..+.+.....-++++.+.
T Consensus 4 p~siAVVGaS~~~~~---~g~~-v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v~e~~ 79 (122)
T 3ff4_A 4 MKKTLILGATPETNR---YAYL-AAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYIL 79 (122)
T ss_dssp CCCEEEETCCSCTTS---HHHH-HHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHH
T ss_pred CCEEEEEccCCCCCC---HHHH-HHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHHHHHH
Confidence 456666663 3332 1222 457777778776554 122345555532343333333333333344333
Q ss_pred --cCCceEEEecCCCCcccCccccCHHHHHHHhcCCEEEEeccCCcc
Q psy11662 267 --SSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTV 311 (346)
Q Consensus 267 --~~~~l~vv~sG~~~pg~dl~~~s~el~~~~~~aDLVIskGMGral 311 (346)
|-. .++++.|. ..+|+.++++++.+-+. | |.+
T Consensus 80 ~~g~k-~v~~~~G~---------~~~e~~~~a~~~Girvv-~--nC~ 113 (122)
T 3ff4_A 80 SLKPK-RVIFNPGT---------ENEELEEILSENGIEPV-I--GCT 113 (122)
T ss_dssp HHCCS-EEEECTTC---------CCHHHHHHHHHTTCEEE-E--SCH
T ss_pred hcCCC-EEEECCCC---------ChHHHHHHHHHcCCeEE-C--CcC
Confidence 333 46777664 26899999999998877 5 643
No 35
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=20.52 E-value=51 Score=30.98 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=28.1
Q ss_pred eEEEEecCCCcceecCchHHHHHHHhCCCeEEEEEe
Q psy11662 200 KAAIFVDNSGIDIVLGILPFARELLRRGTKVILCAN 235 (346)
Q Consensus 200 ~vl~f~DNsGeDIV~d~lPflreLl~~Gs~V~l~v~ 235 (346)
+|+++++.+.-++ ...+|++++|.++|.+|++++.
T Consensus 2 rIli~~~gt~Ghv-~p~~~La~~L~~~Gh~V~v~~~ 36 (404)
T 3h4t_A 2 GVLITGCGSRGDT-EPLVALAARLRELGADARMCLP 36 (404)
T ss_dssp CEEEEEESSHHHH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEeCCCCccH-HHHHHHHHHHHHCCCeEEEEeC
Confidence 4777777766655 6678899999999999999864
Done!