RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11662
(346 letters)
>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase.
Length = 876
Score = 198 bits (506), Expect = 3e-57
Identities = 126/376 (33%), Positives = 181/376 (48%), Gaps = 79/376 (21%)
Query: 7 QAKQEYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEE 66
Q+++EYW E + ++A+AS+ G + A +
Sbjct: 519 QSEREYWFKVLSEHLPDLVDKAVASE----GGTDDAKR---------------------- 552
Query: 67 RATKFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEF 126
R F + + L L + P +AYG L + +LL+ E L+EF F D Y
Sbjct: 553 RGDAFARAFSAHLARLMEEP---------AAYGKLGLANLLELREECLREFHFVDAYRSI 603
Query: 127 VKFETK-YIADCLDFIA--------ANLINSIECMDGKSIKATGGGA----YKYANLIQ- 172
+ E + +A D +A L+ IE + +I G A Y +I+
Sbjct: 604 KQRENEASLAVLPDLLAELDSMTEETRLLTLIEGVLAANIFDWGSRACVELYHKGTIIEI 663
Query: 173 ----EKLGLSPWLVDDLDDWLDRLNNGP-----PHSKAAIFVDNSGIDIVLGILPFAREL 223
PW VDD D + +R+ PH +A +FVDNSG D+VLG+LP AREL
Sbjct: 664 YRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLAREL 723
Query: 224 LRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSG-------------- 269
LRRGT+V+L ANS PALNDVT EL ++ +AA C I+ A +G
Sbjct: 724 LRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGS 783
Query: 270 -------RLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTCE 322
L+ +E PC+DL ++ +LA DLIVLEGMGR +HTN NA+F CE
Sbjct: 784 KDDSTSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIVLEGMGRALHTNFNARFKCE 843
Query: 323 SLKLAVIKNRWLAQRL 338
+LKLA++KN+ LA++L
Sbjct: 844 ALKLAMVKNQRLAEKL 859
Score = 59.5 bits (144), Expect = 1e-09
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Query: 124 LEFVKFETKYIADCLDFIAANLIN---------SIECMDGKSIKATGGGAYKYANLIQEK 174
L FVKFET I +CLDFI++ ++ IKATGGGAYK+A+L +E+
Sbjct: 107 LHFVKFETSKINECLDFISSKQLHRGGIHSWLSKAPPNGNGVIKATGGGAYKFADLFKER 166
Query: 175 LGLSPWLVDDLD 186
LG+S D++D
Sbjct: 167 LGVSLDKEDEMD 178
>gnl|CDD|216798 pfam01937, DUF89, Protein of unknown function DUF89. This family
has no known function.
Length = 315
Score = 141 bits (357), Expect = 2e-39
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 9/171 (5%)
Query: 178 SPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLR--RGTKVILCAN 235
P LVDD D +RL G + +DN+G ++V +L A ELLR TKV+L
Sbjct: 143 RPILVDDTDALWERLK-GSRAKRVDYVLDNAGFELVFDLL-LAEELLRSGLATKVVLHVK 200
Query: 236 SAPALNDVTYSELVVLLRQAATVCHI---IANALSSGRLVAMETAQAGPCLDLSRLGRDL 292
P +NDVT + LL Q A + + L G+L+ + P +D + +L
Sbjct: 201 GIPFVNDVTMEDAEWLLEQLADHSALGAGLDELLKLGKLIDSGSDFWTPGIDFWEMSPEL 260
Query: 293 ATELSSIDLIVLEGMG--RTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQ 341
ELS DL++ +G R + + + T L L K +A L G
Sbjct: 261 YEELSKADLVIFKGDLNYRKLTGDRDWPPTTPILALRTAKCDVVAGLLVGL 311
>gnl|CDD|215498 PLN02920, PLN02920, pantothenate kinase 1.
Length = 398
Score = 64.1 bits (156), Expect = 2e-11
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 124 LEFVKFETKYIADCLDFIAANLI-------NSIECMDGKSIKATGGGAYKYANLIQEKLG 176
L F KFET+ I DCL+FI++N + + D IKATGGGAYK+A+L +EKLG
Sbjct: 60 LHFAKFETRKINDCLEFISSNKLHHGGFQHHENPTHDKNFIKATGGGAYKFADLFKEKLG 119
Query: 177 LSPWLVDDLD 186
+S D++D
Sbjct: 120 ISLDKEDEMD 129
>gnl|CDD|217646 pfam03630, Fumble, Fumble. Fumble is required for cell division in
Drosophila. Mutants lacking fumble exhibit abnormalities
in bipolar spindle organisation, chromosome segregation,
and contractile ring formation. Analyses have
demonstrated that encodes three protein isoforms, all of
which contain a domain with high similarity to the
pantothenate kinases of A. nidulans and mouse. A role of
fumble in membrane synthesis has been proposed.
Length = 329
Score = 58.9 bits (143), Expect = 8e-10
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGLSPWLVD 183
L F+KFET I L+F+ L+N + ATGGGAYK+ L +E L + D
Sbjct: 46 LHFIKFETTDIDLFLEFLKEKLLNK----LTTVLCATGGGAYKFEELFRENLNVKLQKED 101
Query: 184 DLD 186
++D
Sbjct: 102 EMD 104
>gnl|CDD|233021 TIGR00555, panK_eukar, pantothenate kinase,
eukaryotic/staphyloccocal type. This model describes a
eukaryotic form of pantothenate kinase, characterized
from the fungus Aspergillus nidulans and with similar
forms known in several other eukaryotes. It also
includes forms from several Gram-positive bacteria
suggested to have originated from the eukaryotic form by
lateral transfer. It differs in a number of biochemical
properties (such as inhibition by acetyl-CoA) from most
bacterial CoaA and lacks sequence similarity. This
enzyme is the key regulatory step in the biosynthesis of
coenzyme A (CoA) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Pantothenate and coenzyme A].
Length = 296
Score = 45.5 bits (108), Expect = 2e-05
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGLSPWLVD 183
+F FET I ++++ ++ ATGGGA+K+A LI E G+ D
Sbjct: 23 RKFKTFETTNIDKFIEWLKNQ---IHRHSRITTLCATGGGAFKFAELIYESAGIQLHKFD 79
Query: 184 DLD 186
+ D
Sbjct: 80 EFD 82
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 44.5 bits (105), Expect = 6e-05
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 124 LEFVKFETKYIADCLDFIAAN-LINSIECMDGKSIKATGGGAYKYANLIQEKLGLSPWLV 182
L F K +K I D D++A + IN + ++ATGGGA+KYA++ ++ LG++ ++
Sbjct: 1108 LRFAKIPSKQIPDFADYLAGSHAINYYKPQYRTKVRATGGGAFKYASVAKKVLGINFSVM 1167
Query: 183 DDLDDWLDRLN 193
++D + LN
Sbjct: 1168 REMDAVVKGLN 1178
>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme
metabolism].
Length = 342
Score = 42.7 bits (100), Expect = 2e-04
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIE--CMDGKSIKATGGGAYKYANLIQEKLGLSPWL 181
L F ETK I ++++ NLI E C+ ++ ATGGGAYK+ + + ++L +
Sbjct: 42 LTFKTEETKKIDQVVEWLN-NLIQQHEKLCLTKITLIATGGGAYKFYDRMSKQLDIKVIR 100
Query: 182 VDDLDDWLDRLNNGPPHSKAAIFVDN 207
++++ ++ LN + A +FV+
Sbjct: 101 ENEMEILINGLNYFVINIPAEVFVEF 126
>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 31.8 bits (73), Expect = 0.32
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 125 EFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYA---NLIQEKLGLSPWL 181
F + ET+ + + L+ + ++ ATGGGA NL++++ G+ +L
Sbjct: 56 GFRRLETEVLKELLE-------------EDNAVIATGGGAVLSEENRNLLKKR-GIVVYL 101
Query: 182 VDDLDDWLDRLNN 194
+ +RL
Sbjct: 102 DAPFETLYERLQR 114
>gnl|CDD|226810 COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General
function prediction only].
Length = 509
Score = 31.8 bits (72), Expect = 0.51
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 66 ERATKFREKYVSR--LHHLKQHPLL--------FCFDYDFSAYGNLTVRSLLDTIEHYLK 115
+ RE V L L+ P L F DF+ +L+V + + +
Sbjct: 284 DIPAWLRESEVLTWCLPDLR--PALQALNPGGRLYFGVDFARKRDLSVLWVWEKVGDTAW 341
Query: 116 EFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAY 165
LE V F + + ++ L G + ATG G Y
Sbjct: 342 RAVVE---LEIVNFPYQQQEQVMMWLLHLLPMLT----GAAFDATGNGGY 384
>gnl|CDD|224494 COG1578, COG1578, Uncharacterized conserved protein [Function
unknown].
Length = 285
Score = 31.6 bits (72), Expect = 0.55
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 20/136 (14%)
Query: 173 EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVIL 232
EKL + +DD L+ L N + DN+G +IV + G KV++
Sbjct: 130 EKLLDAELYIDDSPKLLELLKN----ASVLYLTDNAG-EIVFD-KVLIEVIKELGKKVVV 183
Query: 233 CANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRDL 292
P LND T + ++A IA +++G + + L + +
Sbjct: 184 VVRGGPILNDATMEDA----KEAGID--EIAKVITTGSDI--------VGIWLEDVSEEF 229
Query: 293 ATELSSIDLIVLEGMG 308
S DLI+ +G G
Sbjct: 230 REAFESADLIIAKGQG 245
>gnl|CDD|184411 PRK13946, PRK13946, shikimate kinase; Provisional.
Length = 184
Score = 30.7 bits (70), Expect = 0.79
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 159 ATGGGAYKYAN---LIQEKLGLSPWLVDDLDDWLDRLN 193
ATGGGA+ I EK G+S WL DLD +R++
Sbjct: 85 ATGGGAFMNEETRAAIAEK-GISVWLKADLDVLWERVS 121
>gnl|CDD|225429 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal
flagella [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 235
Score = 30.4 bits (69), Expect = 1.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 203 IFVDNSGIDIVLGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVC 259
F D VL + F R+L G KVI+ AL++ +++ +R A V
Sbjct: 134 AFATYDSEDAVLNFMTFLRKLSDLG-KVIILTVHPSALDE----DVLTRIRSACDVY 185
>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human prostaglandin dehydrogenase
(PGDH) numbering). In addition to the Tyr and Lys, there
is often an upstream Ser (Ser-138, PGDH numbering)
and/or an Asn (Asn-107, PGDH numbering) contributing to
the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 234
Score = 29.9 bits (68), Expect = 1.4
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 220 ARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQA 279
AR L R G KV+L + AL ++ + L A V +++ LV +
Sbjct: 15 ARRLAREGAKVVLADRNEEALAELA--AIEALGGNAVAVQADVSDEEDVEALVEEALEEF 72
Query: 280 GPCLDL-----SRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTC 321
G LD+ EL+ E R + NL F
Sbjct: 73 GR-LDILVNNAGIARPGPLEELT------DEDWDRVLDVNLTGVFLL 112
>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate
specificities [General function prediction only].
Length = 265
Score = 29.9 bits (68), Expect = 1.7
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 32/114 (28%)
Query: 219 FARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQ 278
A++L RRG +IL A L + L + +I LS
Sbjct: 22 LAKQLARRGYNLILVARREDKLEALAKE----LEDKTGVEVEVIPADLSDPE-------- 69
Query: 279 AGPCLDLSRLGRDLATELSSIDLIV---------------LEGMGRTVHTNLNA 317
L RL +L ID++V L+ + N+ A
Sbjct: 70 -----ALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILA 118
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 28.8 bits (65), Expect = 2.4
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 170 LIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTK 229
+ L +V D RL P + + SG + +L ARE LR G
Sbjct: 15 FARRLLRELGAVVLSSDTLRKRLRGDGPPDISY-YARASG-RVYQRLLELAREALRAGRP 72
Query: 230 VILCA 234
VI+ A
Sbjct: 73 VIVDA 77
>gnl|CDD|239166 cd02765, MopB_4, The MopB_4 CD includes a group of related
uncharacterized bacterial and archaeal
molybdopterin-binding oxidoreductase-like domains with a
putative N-terminal iron-sulfur [4Fe-4S] cluster binding
site and molybdopterin cofactor binding site. These
members belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 567
Score = 29.8 bits (67), Expect = 2.8
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 165 YKYANLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVD 206
++ + E+LGL + +D++ N + I +
Sbjct: 473 FEIEKGLAERLGLGDYFPKTPEDYVRAFMNSDDPALDGITWE 514
>gnl|CDD|211800 TIGR03253, oxalate_frc, formyl-CoA transferase. This enzyme,
formyl-CoA transferase, transfers coenzyme A from
formyl-CoA to oxalate. It forms a pathway, together with
oxalyl-CoA decarboxylase, for oxalate degradation;
decarboxylation by the latter gene regenerates
formyl-CoA. The two enzymes typically are encoded by a
two-gene operon [Cellular processes, Detoxification].
Length = 415
Score = 29.4 bits (66), Expect = 3.2
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 193 NNGPP-HSKAAIFVDNSGIDIVLGILP--FARELLRRGTKV 230
+GPP S AA+ N+G+ +++GIL + RE RG +V
Sbjct: 155 WDGPPLVSGAALGDSNTGMHLMIGILAALYQREHTGRGQRV 195
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 29.4 bits (67), Expect = 3.3
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 220 ARELLRRGTKV-ILCANSAPALN 241
A L RRG +V + A+ APA
Sbjct: 276 ALALARRGWQVTLYEADEAPAQG 298
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 28.8 bits (65), Expect = 3.5
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 179 PWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVIL 232
P++ + + L + P A+ G+++ IL A ++L+ G +IL
Sbjct: 185 PYIPAEDPELLPEVVRYEPLL--ALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236
>gnl|CDD|188905 cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3 family proteins.
SAM (sterile alpha motif) domain of Shank1,2,3 family
proteins is a protein-protein interaction domain.
Shank1,2,3 proteins are scaffold proteins that are known
to interact with a variety of cytoplasmic and membrane
proteins. SAM domains of the Shank1,2,3 family are prone
to homooligomerization. They are highly enriched in the
postsynaptic density, acting as scaffolds to organize
assembly of postsynaptic proteins. SAM domains of Shank3
proteins can form large sheets of helical fibers. Shank
genes show distinct patterns of expression, in rat
Shank1 mRNA is found almost exclusively in brain, Shank2
in brain, kidney and liver, and Shank3 in heart, brain
and spleen.
Length = 66
Score = 26.5 bits (59), Expect = 4.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 177 LSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGID 211
+ W VDD+ DWL+ LN G H + F+DN ID
Sbjct: 2 VHEWTVDDVGDWLESLNLG-EHRER--FMDN-EID 32
>gnl|CDD|211389 cd11548, NodZ_like, Alpha 1,6-fucosyltransferase similar to
Bradyrhizobium NodZ. Bradyrhizobium NodZ is an alpha
1,6-fucosyltransferase involved in the biosynthesis of
the nodulation factor, a lipo-chitooligosaccharide
formed by three-to-six beta-1,4-linked
N-acetyl-d-glucosamine (GlcNAc) residues and a fatty
acid acyl group attached to the nitrogen atom at the
non-reducing end. NodZ transfers L-fucose from the
GDP-beta-L-fucose donor to the reducing residue of the
chitin oligosaccharide backbone, before the attachment
of a fatty acid group. O-fucosyltransferase-like
proteins are GDP-fucose dependent enzymes with
similarities to the family 1 glycosyltransferases (GT1).
They are soluble ER proteins that may be proteolytically
cleaved from a membrane-associated preprotein, and are
involved in the O-fucosylation of protein substrates,
the core fucosylation of growth factor receptors, and
other processes.
Length = 287
Score = 28.9 bits (65), Expect = 4.3
Identities = 16/123 (13%), Positives = 25/123 (20%), Gaps = 15/123 (12%)
Query: 85 HPLLFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKFE-----------TKY 133
PLLF D S G T + P + T
Sbjct: 48 FPLLFDPIEDRSIDGLPDRDPRRGTQNIKGYPQQWIRPTSDLSHRVPAQIFRECDELTVL 107
Query: 134 IADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLN 193
+ A + + K + G L + + +L
Sbjct: 108 DVKGRKAVQAGYLPKLPRDADKLGRDRGIIKCYLYRLFT----PKQEVRAAVRKLYAKLF 163
Query: 194 NGP 196
P
Sbjct: 164 GRP 166
>gnl|CDD|180055 PRK05398, PRK05398, formyl-coenzyme A transferase; Provisional.
Length = 416
Score = 28.8 bits (65), Expect = 4.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 193 NNGPP-HSKAAIFVDNSGIDIVLGILP--FARELLRRGTKV 230
+GPP S AA+ N+G+ + +GIL RE RG +V
Sbjct: 156 WDGPPTVSGAALGDSNTGMHLAIGILAALLQREKTGRGQRV 196
>gnl|CDD|109900 pfam00862, Sucrose_synth, Sucrose synthase. Sucrose synthases
catalyze the synthesis of sucrose from UDP-glucose and
fructose. This family includes the bulk of the sucrose
synthase protein. However the carboxyl terminal region
of the sucrose synthases belongs to the glycosyl
transferase family pfam00534.
Length = 550
Score = 28.7 bits (64), Expect = 5.3
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 99 GNLTVRSLLD--------TIEHYLKEFDFPDPYLEFVKFETKYIADC---LDFIAAN 144
GNL V SLL TI H L++ +PD + + KFE KY C D IA N
Sbjct: 412 GNL-VASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFEKKYHFSCQFTADLIAMN 467
>gnl|CDD|236342 PRK08862, PRK08862, short chain dehydrogenase; Provisional.
Length = 227
Score = 28.2 bits (63), Expect = 5.5
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 220 AREL----LRRGTKVILCANSAPALNDVTYSELVV-LLRQAATVCHIIANALSSGRLVAM 274
A+EL +R G V ++ L+ V ++E+ L+R +I+AN SGR+V
Sbjct: 169 AKELTPFNIRVGGVVPSIFSANGELDAVHWAEIQDELIRNTE---YIVANEYFSGRVVEA 225
Query: 275 E 275
E
Sbjct: 226 E 226
>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional.
Length = 254
Score = 28.4 bits (64), Expect = 5.9
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 22/109 (20%)
Query: 219 FARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQ 278
FARE G KV++ A L+ +LV +R +A G + A+
Sbjct: 26 FARE----GAKVVVGARRQAELD-----QLVAEIRAEGGEAVALA-----GDVRDEAYAK 71
Query: 279 AGPCLDLSRLGR-DLA-------TELSSIDLIVLEGMGRTVHTNLNAKF 319
A L + R G D+A E+ + + LEG T+ TNL + F
Sbjct: 72 ALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAF 120
>gnl|CDD|131932 TIGR02886, spore_II_AA, anti-sigma F factor antagonist. The
anti-sigma F factor antagonist, also called stage II
sporulation protein AA, is a protein universal among
endospore-forming bacteria, all of which belong to the
Firmcutes [Regulatory functions, Protein interactions,
Cellular processes, Sporulation and germination].
Length = 106
Score = 26.8 bits (60), Expect = 6.1
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 204 FVDNSGIDIVLGILPFARELLRRGTKVILCANSAP 238
F+D+SG+ ++LG +++ G +VI+C S
Sbjct: 51 FMDSSGLGVILGRY---KKIKNEGGEVIVCNVSPA 82
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 28.2 bits (63), Expect = 7.3
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 156 SIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNNGPPH 198
+ A GG Y L+ +K G L L D ++RL P H
Sbjct: 7 EVSAKDGGKIDYDKLV-DKFGCQR-LDPSLIDRVERLTGRPAH 47
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 28.1 bits (64), Expect = 8.6
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 201 AAIFVDNSGIDIVLGILP----FARELLRRGTKVILCAN 235
+FV +D G+ P A+ L + VIL N
Sbjct: 83 VILFV----VDGRAGLTPADEEIAKILRKSNKPVILVVN 117
>gnl|CDD|132911 cd06844, STAS, Sulphate Transporter and Anti-Sigma factor
antagonist domain found in the C-terminal region of
sulphate transporters as well as in bacterial and
archaeal proteins involved in the regulation of sigma
factors. The STAS (Sulphate Transporter and Anti-Sigma
factor antagonist) domain is found in the C-terminal
region of sulphate transporters as well as in bacterial
and archaeal proteins involved in the regulation of
sigma factors, like anti-anti-sigma factors and
"stressosome" components. The sigma factor regulators
are involved in protein-protein interaction which is
regulated by phosphorylation.
Length = 100
Score = 26.7 bits (59), Expect = 8.7
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 204 FVDNSGIDIVLGILPFARELLRRGTKVILCANSAPALNDV-TYSEL 248
F+D+SG ++L R G + +L S PA+ T S L
Sbjct: 51 FMDSSGTGVLLERS---RLAEAVGGQFVLTGIS-PAVRITLTESGL 92
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 27.8 bits (63), Expect = 8.7
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 201 AAIFVDNSGIDIVLGILP----FARELLRRGTKVILCAN 235
+FV +D G+ P A+ L + G VIL AN
Sbjct: 81 VILFV----VDGREGLTPEDEEIAKWLRKSGKPVILVAN 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.404
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,769,546
Number of extensions: 1737578
Number of successful extensions: 1826
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1810
Number of HSP's successfully gapped: 49
Length of query: 346
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 248
Effective length of database: 6,590,910
Effective search space: 1634545680
Effective search space used: 1634545680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)