RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11662
(346 letters)
>1xfi_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT2G17340, center for eukaryotic structural
genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1
PDB: 2q40_A
Length = 367
Score = 237 bits (605), Expect = 6e-76
Identities = 102/355 (28%), Positives = 159/355 (44%), Gaps = 59/355 (16%)
Query: 11 EYWLNCFEESVNKFAERAIASQPHSTTGEERATKFREKYFAERAIASQPHSTTGEERATK 70
W+N F S+ F +RA S RA K
Sbjct: 43 ISWINVFANSIPSFKKRAE---------------------------SDITVPDAPARAEK 75
Query: 71 FREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTI-EHYLKEFDFPDPYLEFVKF 129
F E+Y L LK+ P ++G LL + E L+E F D + +
Sbjct: 76 FAERYAGILEDLKKDP---------ESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDE 126
Query: 130 ETKYIADCLDFIAANLI-------------------NSIECMDGKSIKATGGGAYKYANL 170
E + + N + + + +
Sbjct: 127 ENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLAS 186
Query: 171 IQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRRGTKV 230
Q + PW++DDL+++ + N KA IFVDNSG DI+LGILPFARELLRRG +V
Sbjct: 187 CQNLVP-RPWVIDDLENFQAKWIN-KSWKKAVIFVDNSGADIILGILPFARELLRRGAQV 244
Query: 231 ILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGR 290
+L AN P++ND+T +EL +L Q + + + +L+ + P +DLSR+ +
Sbjct: 245 VLAANELPSINDITCTELTEILSQLKDENGQLL-GVDTSKLLIANSGNDLPVIDLSRVSQ 303
Query: 291 DLATELSSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMFSV 345
+LA S DL+++EGMGR + TNL A+F C+SLK+ ++K+ +A+ LGG+++
Sbjct: 304 ELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDC 358
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Length = 299
Score = 121 bits (304), Expect = 4e-32
Identities = 39/309 (12%), Positives = 88/309 (28%), Gaps = 59/309 (19%)
Query: 51 AERAIASQPHSTTGEERATKFREKYVSRLHHLKQHPLLFCFDYDFSAYGNLTVRSLLDTI 110
+R + RA K +++ ++ P + G+L
Sbjct: 27 CQRIVEMATQDMDIRRRAMILAAKLLAKEYNENAIP---------AIAGSLIFL------ 71
Query: 111 EHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKSIKA----------T 160
K DP++E+ + D + ++ ++K
Sbjct: 72 -ELYKFLGNDDPFIEYKLKSEEMARKVAD----IIKRKLKLDFELAVKLAIIGNVIDFSV 126
Query: 161 GGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFA 220
G +++ L +DD + + + DN G + +
Sbjct: 127 GFSPEDLEEEVEKMLK-DKLYIDDSKELFEEVKRA---ENILYITDNVG-EHYFDAI-LI 180
Query: 221 RELLRRG-TKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQA 279
++ +V + P +ND T +L + + +S+G
Sbjct: 181 EKIREISNAEVYIAGKEGPIINDATVEDLKRAGLEK------LGKVISTG--------TR 226
Query: 280 GPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTCESLK---LAVIKNRWLAQ 336
+ L + R+ + D+I+ +G G N + L K +A+
Sbjct: 227 IVGVPLKLVSREFMEAFNKADVIIAKGQG-----NFETLSEINDSRIFFLLKAKCPAVAR 281
Query: 337 RLGGQMFSV 345
L ++
Sbjct: 282 ELKVPKGAL 290
>2ffj_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Length = 300
Score = 116 bits (291), Expect = 3e-30
Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 39/249 (15%)
Query: 111 EHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGG-----GAY 165
+ DPY E + L + S + I + G G
Sbjct: 71 RRVYEILGVEDPYAEVKARANEVARQVLPLAKEIVEGSDDPFKTAVIVSIVGNNFDYGVQ 130
Query: 166 KYANLIQ------EKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPF 219
+ + + ++ ++D + + K DN+G +I L
Sbjct: 131 GHKVVEEEFRDFLKRKVQEGLKINDTERIKEL-----SSGKVVYLTDNAG-EIFFDTL-L 183
Query: 220 ARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQA 279
+E+ RR K+ P ++D T + + + + +
Sbjct: 184 MKEIKRRCEKLTAVVRGRPIISDATIEDARLA-------------RVDKIADELLTNGKG 230
Query: 280 GPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTCESLK---LAVIKNRWLAQ 336
+ + L + L DLIV +GM N L K +A+
Sbjct: 231 AIGIIMDELPDETRKALEEADLIVAKGMA-----NYECLSDGSLKPIAFLLTAKCEPVAR 285
Query: 337 RLGGQMFSV 345
+G + +
Sbjct: 286 DIGVNVGDM 294
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 8e-09
Identities = 36/232 (15%), Positives = 65/232 (28%), Gaps = 60/232 (25%)
Query: 3 NVIIQAK--QEYWLN----CFEESVNKFAERA-IASQPHSTTGE--ERATKFREKYFAER 53
+ I W + VNK + + + QP +T + + K E
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 54 AIASQPHSTTGEERATKFREKYVSRLHHLKQHPLLFCFD---YDFSAYGNLTVRSLLDTI 110
A+ H + Y + D Y + L I
Sbjct: 444 AL----HR--------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------LKNI 484
Query: 111 EHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGA------ 164
EH + F +L+F F+ + + D + A+G
Sbjct: 485 EHPERMTLFRMVFLDF------------RFLEQKIRH-----DSTAWNASGSILNTLQQL 527
Query: 165 YKYANLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKA------AIFVDNSGI 210
Y I + LV+ + D+L ++ SK A+ ++ I
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 41.0 bits (95), Expect = 5e-04
Identities = 51/353 (14%), Positives = 103/353 (29%), Gaps = 89/353 (25%)
Query: 5 IIQAKQEYWLNCFEESVNK----FAERAIASQPHSTTGEERA-TKFREKYFAERAIASQP 59
+ +KQE + F E V + F I ++ + R + R++ + + + +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-K 128
Query: 60 HSTTGEERATKFREKYVSRLHHLKQHPLLFCFDYDFSAYG-------NLTVRSLLDTIEH 112
++ + + K R+ L L+ + G + + L
Sbjct: 129 YNVSRLQPYLKLRQA----LLELRPAKNVL-------IDGVLGSGKTWVALDVCLS--YK 175
Query: 113 YLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQ 172
+ DF +L + L+ + L+ I+ N
Sbjct: 176 VQCKMDFKIFWLNLKNCNSP--ETVLE-MLQKLLYQIDP-----------------NWTS 215
Query: 173 EKLGLS--PWLVDDLDDWLDRLNNGPPHSKAAIFVDN-------SGIDIVLGILPFAREL 223
S + + L RL P+ + + N + ++
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----------- 264
Query: 224 LRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQA-GPC 282
K++L T + V AAT HI + S L E
Sbjct: 265 ---SCKILL----------TTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKY 310
Query: 283 LDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLN-----AKFTCESLKLAVIK 330
LD +DL E+ + + L + ++ L C+ L +I+
Sbjct: 311 LDCRP--QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIE 360
Score = 41.0 bits (95), Expect = 5e-04
Identities = 34/278 (12%), Positives = 77/278 (27%), Gaps = 107/278 (38%)
Query: 80 HHLKQHPLLFCFDYDFSA--YGNLTVRSLLDTIEHYLKEFDFPDPYLEFVK-FETKYIAD 136
HH H D++ Y D + + F V F+ K + D
Sbjct: 1 HHHHHH-----MDFETGEHQYQYK------DILSVFEDAF---------VDNFDCKDVQD 40
Query: 137 CLDFIAANLINSIECMDGKSIKATGGGAYKYANLI--QEKLGLSPWLVDDLD---DWL-D 190
++++ E K G + + +++ + ++ + L +L
Sbjct: 41 MP----KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 191 RLNNGP--PHSKAAIFVDNSGIDIVLGILPFARELLRRGTKVILCANSAPALNDVTYSEL 248
+ P ++++ R+ L +V N V+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIE-------------QRDRLYNDNQVF------AKYN-VSRLQP 136
Query: 249 VVLLRQAATVCHIIANALSSGRLVAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGM- 307
+ LRQA EL ++++G+
Sbjct: 137 YLKLRQALL-------------------------------------ELRPAKNVLIDGVL 159
Query: 308 --GRTVHTNLNAKFTCESLKLAVIKNRWLAQRLGGQMF 343
G+T + L V + + ++ ++F
Sbjct: 160 GSGKTW------------VALDVCLSYKVQCKMDFKIF 185
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo
sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A*
2i7p_A* 3mk6_A*
Length = 360
Score = 53.6 bits (128), Expect = 3e-08
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 12/115 (10%)
Query: 91 FDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLINSIE 150
+ +AYG +R +E L F++F + + + + +S
Sbjct: 43 YLTSNTAYGKTGIRD--VHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSS-- 98
Query: 151 CMDGKSIKATGGGAYKYANLIQEKLGLSPWLVDDLD------DWLDRLNNGPPHS 199
++ ATGGGA+K+ + L +D+LD ++D +
Sbjct: 99 --LHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPE 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 6e-07
Identities = 52/286 (18%), Positives = 88/286 (30%), Gaps = 92/286 (32%)
Query: 28 AIASQPHSTTGEERATKFREKYFAERAI--------ASQ---PHST-----------TGE 65
AIA + + E F +AI P+++ E
Sbjct: 282 AIAE---TDSWES----FFVS--VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 66 ERAT----------KFREKYVSRL-HHLKQHPL----LFCFDYDF-------SAYG-NLT 102
+ + + YV++ HL L + S YG NLT
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 103 VRSL-----LDT--IEHYLKEFDFPDPYLE-FVKFETKYIADCLDFIAANLINSIECMDG 154
+R LD I ++ F + +L F + + D I +L+ + +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 155 KSIK----ATGGGAYKYANLIQEKLGLSPWLVDDLD----DWLDRLNNGPPHSKAAIFVD 206
K I+ T G ++L +S +VD + W H +D
Sbjct: 453 KDIQIPVYDTFDG----SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH-----ILD 503
Query: 207 -----NSGIDIVLGILPFARELLRRGTKVILCA--NSAPALNDVTY 245
SG LG+L R G +VI+ + P +D +
Sbjct: 504 FGPGGASG----LGVL-THRNKDGTGVRVIVAGTLDINPD-DDYGF 543
Score = 49.3 bits (117), Expect = 1e-06
Identities = 48/283 (16%), Positives = 77/283 (27%), Gaps = 99/283 (34%)
Query: 14 LNCFEES------VNKFAERAIASQPHSTTGEERATKFREK-YFAERAIASQPHSTTGEE 66
L FE ++ A A TK K Y R +A +P
Sbjct: 88 LTEFENCYLEGNDIHALA----AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN- 142
Query: 67 RATKFREKYVSRLHHLKQHPLLFCFDYDFSAY------GNLTVRSLLDTIEHYLKEF-DF 119
S L + + + GN + Y +E D
Sbjct: 143 ----------SAL--FRAVG-----EGNAQLVAIFGGQGN---------TDDYFEELRDL 176
Query: 120 PDPYLEFVKFETKYIADCLDFIAANLINSIEC-MDGKSIKATGGGAYKYANLIQEKLGLS 178
Y V D + F A L I +D + + + GL
Sbjct: 177 YQTYHVLVG-------DLIKFSAETLSELIRTTLDAEKV-------FTQ--------GL- 213
Query: 179 PWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVL-GILPFARELLRRGTKVILCANSA 237
++ +WL+ +N P ++ + I L G++ A V+
Sbjct: 214 -----NILEWLENPSNTPDKD----YLLSIPISCPLIGVIQLAH-------YVVTAKLL- 256
Query: 238 PALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQAG 280
T EL L + AT S G + A+ A+
Sbjct: 257 ----GFTPGELRSYL-KGATGH-------SQGLVTAVAIAETD 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 33.3 bits (77), Expect = 0.052
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 144 NLINSIECMDGKSIKATGGGAYKYANLIQEKLGLSPWLVDDLDDWLDRLNN 194
NLI+ ++ + + +TGGG + NL + LG + +L D + + RLN
Sbjct: 68 NLIDELKTLKTPHVISTGGGIVMHENL--KGLGTTFYLKMDFETLIKRLNQ 116
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics
consortium, S transferase; HET: ANP; 2.05A
{Staphylococcus aureus subsp} SCOP: c.55.1.14
Length = 287
Score = 33.2 bits (75), Expect = 0.12
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 124 LEFVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLI 171
F TK I ++++ I + + TGG A A I
Sbjct: 42 RTFKTELTKNIDQVVEWLNQQQI--------EKLCLTGGNAGVIAENI 81
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national
project on protein STR and functional analyses; 2.06A
{Sulfolobus tokodaii}
Length = 108
Score = 30.5 bits (69), Expect = 0.23
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 182 VDDLDDWLDRLNN------GPPHSKAAIFVDNSGIDIVLGILPFA---RELLRRGTKVIL 232
+ D D L + ++ + + S I +L +L+++ ++
Sbjct: 7 IKDFDKVPQALRSVINLYNDIKDAEIEVVLHQSAIKALLKDSDTRSIIEDLIKKNILIVG 66
Query: 233 CANSAPALN 241
C NS + N
Sbjct: 67 CENSIRSQN 75
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein,
glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus
thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Length = 314
Score = 29.7 bits (67), Expect = 1.2
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 146 INSIECMDGK--SIKATGGGAYKYANLIQEKLGLSP-----WLVDDLDDWLDRLNNG 195
I ++ + GK + G G + A I E GL+ + + + +
Sbjct: 123 IRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDK 179
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER
bacterium, transport protein; HET: LYS; 1.79A
{Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Length = 272
Score = 29.6 bits (67), Expect = 1.4
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 23/99 (23%)
Query: 115 KEFDFPDPYLE-----FVKFETKYIADCLDFIAANLINSIECMDGKSIKA-TGGGAYKYA 168
+ +DF DPY E VK + + + + GK+I + A
Sbjct: 116 QSYDFSDPYFEATQVILVK-------------QGSPVKNALDLKGKTIGVQNATTGQEAA 162
Query: 169 NLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDN 207
+ K G + + L NG A+ DN
Sbjct: 163 EKLFGK-GPHIKKFETTVVAIMELLNG---GVDAVITDN 197
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 29.1 bits (66), Expect = 1.8
Identities = 16/111 (14%), Positives = 28/111 (25%), Gaps = 17/111 (15%)
Query: 220 ARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALS-SGRLVAMETAQ 278
L R G VI D +++ L +A L G ++
Sbjct: 18 KELLARAGHTVIGI--------DRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCC 69
Query: 279 AGPCLDLSRLGRDLATELSSIDLIV--------LEGMGRTVHTNLNAKFTC 321
AG + + G +A + ++ V A
Sbjct: 70 AGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQP 120
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain,
anion exchange, membrane, transport protein; HET: MSE;
1.60A {Wolinella succinogenes} PDB: 3oir_A*
Length = 135
Score = 28.1 bits (63), Expect = 2.3
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 182 VDDLDDWLDRLNNGPPH----SKAAIFVDNSGIDIVLGILPFARELLRRGTKVILC 233
D L LD + P + +D +G+ + F +RGT ++L
Sbjct: 38 ADRLKGVLDVIEETPKVFILRMRRVPVIDATGMHALWE---FQESCEKRGTILLLS 90
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 28.7 bits (64), Expect = 2.4
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 152 MDGKSIKATGG--GAYK--YANLIQEKLGLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDN 207
M ++ G K + + L L P L D + + + +G S +
Sbjct: 2 MQTPALIIVTGHPATGKTTLSQALATGLRL-PLL--SKDAFKEVMFDGLGWSDRE-WSRR 57
Query: 208 SGIDIVLGILPFARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHII 262
G ++ + A +L+ G +I+ + D+ + L A I
Sbjct: 58 VGATAIMMLYHTAATILQSGQSLIME---SNFRVDLDTERMQNLHTIAPFTPIQI 109
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 28.7 bits (65), Expect = 2.9
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 220 ARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQA 279
AR L RG V CA A ++ L + + VA +
Sbjct: 41 ARTLAARGIAVYGCARDAKNVSAAV-DGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99
Query: 280 GP 281
GP
Sbjct: 100 GP 101
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 27.8 bits (63), Expect = 2.9
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 201 AAIFVDNSGIDIVLGILP----FARELLRRGTKVILCAN 235
+F +D + A L R+G VIL A
Sbjct: 82 VVLFA----VDGRAELTQADYEVAEYLRRKGKPVILVAT 116
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 3.0
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 57 SQPHSTTGE-ERATKFREKYVSRLHHL 82
+Q T E E K+RE+ RL L
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQEL 101
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 28.7 bits (65), Expect = 3.3
Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 15/77 (19%)
Query: 108 DTIEHYL-KEFDFPDPYLEFVKFETKYIADCLDFIAANLINS------IECMDGKSIKAT 160
IE + +E + E + Y + ++ + M
Sbjct: 134 KAIEALVPEEARALEGAYETLDLREAYFEALKAHLDLKALSGFSGVLYHDSM-------- 185
Query: 161 GGGAYKYANLIQEKLGL 177
GG + +GL
Sbjct: 186 GGAGAGFLKGFLRHVGL 202
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein
STRU initiative; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Length = 113
Score = 27.2 bits (60), Expect = 3.8
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 183 DDLDDWLDRLNN------GPPHSKAAIFVDNSGIDIVL---GILPFARELLRRGTKVILC 233
DD L ++N + + + G++++ EL +G + C
Sbjct: 13 DDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRDSEYSGDVSELTGQGVRFCAC 72
Query: 234 ANSAPALNDVTYSELV 249
+N+ A + +L+
Sbjct: 73 SNTLRASG-MDGDDLL 87
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 28.5 bits (63), Expect = 3.8
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 132 KYIADCLDFIAANLINSIECMDG-KSIKATGGGAYKYANLIQEKLGLSPWLVDD 184
K ++ + +N ++ ++ I TGGGA + + + DD
Sbjct: 268 KEQDSLIEEVMSNFEITVGNINSIDRIIVTGGGANIHFDSLSHYYSDVFEKADD 321
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase,
phosphoprotein, transferase; 2.40A {Geobacter
sulfurreducens}
Length = 234
Score = 28.0 bits (63), Expect = 4.0
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 18/86 (20%)
Query: 115 KEFDFPDPYLE-----FVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYAN 169
++ DF P+ F + D + +E + G+ + G +
Sbjct: 85 RQIDFTPPHTIVYHAIFAR------RD------SPPAAGLEDLRGRKVALHRDGIM-HEY 131
Query: 170 LIQEKLGLSPWLVDDLDDWLDRLNNG 195
L + G L D L L G
Sbjct: 132 LAERGYGKDLVLTPTPADALRLLAAG 157
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 28.2 bits (62), Expect = 4.5
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 88 LFCFDYDFSAYGNLTVRSLLDTIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAANLIN 147
+ F +L +L + K+ P+ ++ ++ I NL
Sbjct: 236 KIAKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILE---DLANRIIENIRLNLRG 292
Query: 148 SIECMDGKSIKATGGGAYKYANLIQEKLGLSPWLVDDLD 186
++ + + GGG+ + +E + + D
Sbjct: 293 EVDRVTS--LIPVGGGSNLIGDRFEEIAPGTLVKIKPED 329
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 27.9 bits (63), Expect = 4.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 220 ARELLRRGTKVILCANSAPALNDV 243
A L G +V+L A S L V
Sbjct: 24 AAGLATDGYRVVLIARSKQNLEKV 47
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 27.9 bits (63), Expect = 5.0
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 201 AAIFVDNSGIDIVLGILP----FARELLRRGTKVILCAN 235
+FV +D GI A L + IL AN
Sbjct: 84 LVLFV----VDGKRGITKEDESLADFLRKSTVDTILVAN 118
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 27.6 bits (62), Expect = 5.4
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 220 ARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAMETAQA 279
AR L + G +V +CA L EL +A + + LVA +
Sbjct: 39 ARRLGKEGLRVFVCARGEEGLRTTL-KELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97
Query: 280 GP 281
GP
Sbjct: 98 GP 99
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 27.6 bits (62), Expect = 5.5
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 15/75 (20%)
Query: 126 FVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYANLIQE--KLGLSPWLVD 183
F + E + + +F + +TGGGA + + ++ + G + +L
Sbjct: 80 FRELERNMLHEVAEF-------------ENVVISTGGGAPCFYDNMEFMNRTGKTVFLNV 126
Query: 184 DLDDWLDRLNNGPPH 198
D RL
Sbjct: 127 HPDVLFRRLRIAKQQ 141
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 27.4 bits (61), Expect = 5.8
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 146 INSIECMDGKSIKATGGGAY-KYANLIQEKLGLSPWLVDDLDDWLDRL 192
+ + M + + +TGGGA + N G+S WL L+ R+
Sbjct: 112 LKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRI 159
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
signaling protein; 2.04A {Bordetella pertussis} PDB:
3mpl_A
Length = 267
Score = 27.3 bits (61), Expect = 6.2
Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 33/118 (27%)
Query: 115 KEFDFPDPYLE-----FVKFETKYIADCLDFIAANLINSIECMDGKSIKATGGGAYKYAN 169
F PY+ + + + +DG+++
Sbjct: 107 SFLSFSRPYVRNGMVIVTRQDPDA------------PVDADHLDGRTVALVRN--SAAIP 152
Query: 170 LIQEKL-GLSPWLVDDLDDWLDRLNNGPPHSKAAIFVDNSGIDIVLGILPFARELLRR 226
L+Q + D+ + + + NG D V+ A + R
Sbjct: 153 LLQRRYPQAKVVTADNPSEAMLMVANG-------------QADAVVQTQISASYYVNR 197
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 27.5 bits (62), Expect = 6.6
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 17/111 (15%)
Query: 220 ARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSSGRLVAM-ETAQ 278
AR G V+L + +L +V ++ + + + ++ + + +
Sbjct: 31 ARAYAAHGASVVLLGRTEASLAEV-SDQIKSAGQPQPLIIALNLENATAQQYRELAARVE 89
Query: 279 AGPCLDLSRLGR-DLA-------TELSSIDLIVLEGMGRTVHTNLNAKFTC 321
GR D + ++ + E + +H N+NA F
Sbjct: 90 H-------EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFML 133
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 27.3 bits (61), Expect = 7.6
Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 19/121 (15%)
Query: 220 ARELLRRGTKVILCANSAPALNDVTYSELVVLLRQAATVCHIIANALSS--GRL------ 271
+ L G +++ D+ +E++ L A IA+ L+ +
Sbjct: 18 RKVLEAAGHQIVGI--------DIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLC 69
Query: 272 --VAMETAQAGPCLDLSRLGRDLATELSSIDLIVLEGMGRTVHTNLNAKFTCESLKLAVI 329
+ +T G + ++ G + + + + V + A K +
Sbjct: 70 AGLGPQTKVLGNVVSVNYFGATELMD-AFLPALKKGHQPAAVVISSVASAHLAFDKNPLA 128
Query: 330 K 330
Sbjct: 129 L 129
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 27.2 bits (61), Expect = 7.6
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 220 ARELLRRGTKVILCANSAPALNDV 243
A L + G V++ A S L V
Sbjct: 45 AYHLAKMGAHVVVTARSKETLQKV 68
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 27.4 bits (61), Expect = 7.7
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 34 HSTTGEERATKFREKYFAERAIASQPHSTTGEERATKFREKYVSRLHHLKQHP 86
H TG E A K E A P AT+ RE L + HP
Sbjct: 115 HRATGHEFAVKIMEV----TAERLSPEQLEEVREATR-RE--THILRQVAGHP 160
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 26.8 bits (60), Expect = 8.6
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 219 FARELLRRGTKVILCANSAPALNDV 243
A+ G L S L+ V
Sbjct: 17 LAKLYDAEGKATYLTGRSESKLSTV 41
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.3 bits (61), Expect = 8.8
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 29 IASQPHSTTGEERATKFREKYFAERA 54
PH F+ + + +A
Sbjct: 24 FYQVPHCIGAGSDKPGFQSAHRSVKA 49
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595,
national institute of allergy and infectious diseases;
HET: MSE; 1.60A {Bacillus anthracis}
Length = 422
Score = 27.1 bits (60), Expect = 9.8
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 24/155 (15%)
Query: 92 DYDFSAYGNLTVRSLLD-TIEHYLKEFDFPDPYLEFVKFETKYIADCLDFIAA--NLINS 148
+ + +G T++ L+D + + P LE + ++ L +
Sbjct: 171 ELKNTPFGKATLQQLMDMQVSVEYPTHGYEHPALENQDAQLYLASNILPRDKNYDGPMKI 230
Query: 149 IECMDGKSIKATGGGAYKYAN--------LIQEKLGLSPWLVDDLDDWL-DRLNNGPPHS 199
+ + A G + Y N +I+ G S L +++ + + ++ G +
Sbjct: 231 YDMLQEAKETAPPGSVFSYNNGSTETLAWIIRTITGKS--LAENVSERIWSQI--GMEEN 286
Query: 200 KAAIFVDNSGIDIVLGILP-----FAR--ELLRRG 227
A D + I+ L AR +LL
Sbjct: 287 -AYYVTDETKIEQASAGLNATARDMARFGQLLLNN 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.404
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,414,282
Number of extensions: 335819
Number of successful extensions: 1028
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1002
Number of HSP's successfully gapped: 53
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)