BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11663
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank
pdb|3MK6|B Chain B, Substrate And Inhibitor Binding To Pank
pdb|3MK6|C Chain C, Substrate And Inhibitor Binding To Pank
pdb|3MK6|D Chain D, Substrate And Inhibitor Binding To Pank
Length = 376
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 134/229 (58%), Gaps = 10/229 (4%)
Query: 1 MECLIQGCNFLLR---NISDEAFVYNRHGNPE----YDFQLAEPNIFPYLLVNIGSGVSI 53
++CL++G ++ N E + + PE F L +P +P L+VNIGSGVSI
Sbjct: 147 LDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDP--YPLLVVNIGSGVSI 204
Query: 54 MKVESDSKVERIXXXXXXXXXXXXXXXXXXKAKGFDELLELAEKGDHRHADMLVRDIYGG 113
+ V S +R+ + F+E LE+A KGD AD LVRDIYGG
Sbjct: 205 LAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGG 264
Query: 114 DYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLK 173
DY+ GLPG +ASSFG + ++ E S+ DLAR+ L I+N+IG +A + A+ K+
Sbjct: 265 DYERFGLPGWAVASSFGNMIYKEKRE-SVSKEDLARATLVTITNNIGSVARMCAVNEKIN 323
Query: 174 KVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222
+V F G FLR + LSM +++++ YWSKG +++LFL HEGY GA+GA L
Sbjct: 324 RVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVGALL 372
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|B Chain B, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|C Chain C, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|D Chain D, Crystal Structure Of Human Pank3 In Complex With Accoa
Length = 362
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 134/229 (58%), Gaps = 10/229 (4%)
Query: 1 MECLIQGCNFLLR---NISDEAFVYNRHGNPE----YDFQLAEPNIFPYLLVNIGSGVSI 53
++CL++G ++ N E + + PE F L +P +P L+VNIGSGVSI
Sbjct: 133 LDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDP--YPLLVVNIGSGVSI 190
Query: 54 MKVESDSKVERIXXXXXXXXXXXXXXXXXXKAKGFDELLELAEKGDHRHADMLVRDIYGG 113
+ V S +R+ + F+E LE+A KGD AD LVRDIYGG
Sbjct: 191 LAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGG 250
Query: 114 DYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLK 173
DY+ GLPG +ASSFG + ++ E S+ DLAR+ L I+N+IG +A + A+ K+
Sbjct: 251 DYERFGLPGWAVASSFGNMIYKEKRE-SVSKEDLARATLVTITNNIGSVARMCAVNEKIN 309
Query: 174 KVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222
+V F G FLR + LSM +++++ YWSKG +++LFL HEGY GA+GA L
Sbjct: 310 RVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVGALL 358
>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate
Analog
Length = 382
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 134/229 (58%), Gaps = 10/229 (4%)
Query: 1 MECLIQGCNFLLR---NISDEAFVYNRHGNPE----YDFQLAEPNIFPYLLVNIGSGVSI 53
++CL++G ++ N E + + PE F L +P +P L+VNIGSGVSI
Sbjct: 149 LDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDP--YPLLVVNIGSGVSI 206
Query: 54 MKVESDSKVERIXXXXXXXXXXXXXXXXXXKAKGFDELLELAEKGDHRHADMLVRDIYGG 113
+ V S +R+ + F+E LE+A KGD AD LVRDIYGG
Sbjct: 207 LAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGG 266
Query: 114 DYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLK 173
DY+ GLPG +ASSFG + ++ E S+ DLAR+ L I+N+IG +A + A+ K+
Sbjct: 267 DYERFGLPGWAVASSFGNMIYKEKRE-SVSKEDLARATLVTITNNIGSVARMCAVNEKIN 325
Query: 174 KVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222
+V F G FLR + LSM +++++ YWSKG +++LFL HEGY GA+GA L
Sbjct: 326 RVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVGALL 374
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
pdb|2I7N|B Chain B, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
Length = 360
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 132/230 (57%), Gaps = 10/230 (4%)
Query: 1 MECLIQGCNFLLR---NISDEAFVYNRHGNPEY----DFQLAEPNIFPYLLVNIGSGVSI 53
++CLIQG ++ N E + + NPE + L P +P LLVN+GSGVSI
Sbjct: 131 LDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNP--YPMLLVNMGSGVSI 188
Query: 54 MKVESDSKVERIXXXXXXXXXXXXXXXXXXKAKGFDELLELAEKGDHRHADMLVRDIYGG 113
+ V S +R+ + F+E LE+A KGD + D LV+DIYGG
Sbjct: 189 LAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGG 248
Query: 114 DYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLK 173
DY+ GL G +ASSFG + ++ + S+ DLAR+ L I+N+IG IA + A+ +
Sbjct: 249 DYERFGLQGSAVASSFGNMMSKEKRD-SISKEDLARATLVTITNNIGSIARMCALNENID 307
Query: 174 KVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLR 223
+V F G FLR + +SM +++++ +WSKG +++LFL HEGY GA+GA L
Sbjct: 308 RVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLE 357
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 132/230 (57%), Gaps = 10/230 (4%)
Query: 1 MECLIQGCNFLLR---NISDEAFVYNRHGNPEY----DFQLAEPNIFPYLLVNIGSGVSI 53
++CLIQG ++ N E + + NPE + L P +P LLVN+GSGVSI
Sbjct: 153 LDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNP--YPMLLVNMGSGVSI 210
Query: 54 MKVESDSKVERIXXXXXXXXXXXXXXXXXXKAKGFDELLELAEKGDHRHADMLVRDIYGG 113
+ V S +R+ + F+E LE+A KGD + D LV+DIYGG
Sbjct: 211 LAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGG 270
Query: 114 DYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLK 173
DY+ GL G +ASSFG + ++ + S+ DLAR+ L I+N+IG IA + A+ +
Sbjct: 271 DYERFGLQGSAVASSFGNMMSKEKRD-SISKEDLARATLVTITNNIGSIARMCALNENID 329
Query: 174 KVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLR 223
+V F G FLR + +SM +++++ +WSKG +++LFL HEGY GA+GA L
Sbjct: 330 RVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLE 379
>pdb|2EWS|A Chain A, Crystal Structure Of S.Aureus Pantothenate Kinase
pdb|2EWS|B Chain B, Crystal Structure Of S.Aureus Pantothenate Kinase
Length = 287
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 42 YLLVNIGSGVSIMKVESDSKVERIXXXXXXXXXXXXXXXXXXKAKGFDELLELAEKGDHR 101
Y+ N+G+G S+ + S+ R+ + + +L ++A+ GD
Sbjct: 112 YIFANVGTGTSLHYFDGQSQ-RRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRN 170
Query: 102 HADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQ 161
D+ VR IY + PGDL A++FG V ++ + ++ +++ + +
Sbjct: 171 TIDLKVRHIYKDTEPPI--PGDLTAANFGHVLHH--LDADFTPSNKLAAVIGVVGEVVTT 226
Query: 162 IASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAF 221
+A A K + + + G N+ L + Y + ++ + + GAIGA
Sbjct: 227 MAITVAREFKTENIVYIGSSFHNNALLRKVVE---DYTVLRGCKPYYVENGAFSGAIGAL 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,137,703
Number of Sequences: 62578
Number of extensions: 305586
Number of successful extensions: 712
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 13
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)