Query psy11663
Match_columns 297
No_of_seqs 211 out of 416
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 15:42:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2201|consensus 100.0 1.4E-88 2.9E-93 642.2 16.6 223 1-224 133-357 (371)
2 PF03630 Fumble: Fumble ; Int 100.0 3.2E-78 6.9E-83 579.4 18.2 224 1-224 115-340 (341)
3 PLN02920 pantothenate kinase 1 100.0 5.7E-76 1.2E-80 570.0 23.1 224 1-226 128-352 (398)
4 PLN02902 pantothenate kinase 100.0 8.1E-75 1.7E-79 600.9 22.9 270 1-292 177-449 (876)
5 PTZ00297 pantothenate kinase; 100.0 6.8E-69 1.5E-73 586.4 22.9 228 1-228 1170-1448(1452)
6 COG5146 PanK Pantothenate kina 100.0 3.3E-68 7.1E-73 489.0 14.8 225 1-226 104-332 (342)
7 TIGR00555 panK_eukar pantothen 100.0 1E-63 2.2E-68 468.2 19.7 199 1-223 81-279 (279)
8 PRK13317 pantothenate kinase; 100.0 7.6E-47 1.6E-51 353.5 19.9 198 1-226 77-274 (277)
9 KOG2201|consensus 99.8 5.3E-20 1.1E-24 175.7 1.8 46 232-277 315-360 (371)
10 PLN02902 pantothenate kinase 99.5 1.4E-14 3E-19 152.5 2.2 47 232-278 357-403 (876)
11 PTZ00297 pantothenate kinase; 99.4 1.5E-13 3.2E-18 152.5 2.9 49 232-280 1402-1450(1452)
12 PLN02920 pantothenate kinase 1 99.4 3E-13 6.5E-18 132.7 3.8 46 232-277 308-353 (398)
13 PF03630 Fumble: Fumble ; Int 99.3 4.7E-13 1E-17 129.5 3.8 43 232-274 298-340 (341)
14 COG5146 PanK Pantothenate kina 99.3 7.4E-13 1.6E-17 123.4 2.6 46 233-278 289-334 (342)
15 TIGR03286 methan_mark_15 putat 99.0 7.5E-09 1.6E-13 102.3 14.8 154 41-224 242-401 (404)
16 TIGR00555 panK_eukar pantothen 98.4 1.5E-07 3.3E-12 89.2 2.7 38 233-273 242-279 (279)
17 TIGR00241 CoA_E_activ CoA-subs 98.1 6.6E-05 1.4E-09 68.9 13.8 149 43-222 94-247 (248)
18 TIGR02259 benz_CoA_red_A benzo 97.2 0.0059 1.3E-07 61.2 13.3 157 43-223 270-431 (432)
19 TIGR02261 benz_CoA_red_D benzo 97.2 0.0021 4.6E-08 60.8 9.7 132 68-223 129-261 (262)
20 PRK09604 UGMP family protein; 96.9 0.011 2.4E-07 57.1 11.5 144 39-193 126-275 (332)
21 TIGR03723 bact_gcp putative gl 96.7 0.027 5.8E-07 54.0 12.4 161 38-210 124-294 (314)
22 TIGR03192 benz_CoA_bzdQ benzoy 96.7 0.012 2.6E-07 56.6 9.8 157 42-226 127-288 (293)
23 TIGR00329 gcp_kae1 metallohydr 96.6 0.026 5.6E-07 53.8 11.7 150 39-193 124-279 (305)
24 PRK14878 UGMP family protein; 96.6 0.075 1.6E-06 51.1 14.8 163 39-223 119-288 (323)
25 TIGR01312 XylB D-xylulose kina 96.4 0.31 6.7E-06 48.2 18.3 166 41-224 250-435 (481)
26 PRK13317 pantothenate kinase; 96.3 0.002 4.2E-08 61.1 2.1 42 233-277 234-275 (277)
27 PRK03011 butyrate kinase; Prov 96.1 0.046 9.9E-07 53.7 10.5 166 39-222 175-343 (358)
28 TIGR03722 arch_KAE1 universal 96.0 0.15 3.2E-06 48.9 13.1 160 39-222 120-288 (322)
29 PRK15027 xylulokinase; Provisi 95.9 0.73 1.6E-05 46.2 18.3 129 80-224 302-432 (484)
30 PF02782 FGGY_C: FGGY family o 95.6 1.3 2.9E-05 38.1 17.8 76 141-224 117-194 (198)
31 COG1924 Activator of 2-hydroxy 95.2 0.079 1.7E-06 52.8 8.2 155 43-226 232-390 (396)
32 TIGR01234 L-ribulokinase L-rib 95.1 1.7 3.7E-05 44.3 17.7 122 87-224 358-481 (536)
33 PRK09605 bifunctional UGMP fam 94.9 0.22 4.7E-06 50.6 10.7 153 39-210 123-280 (535)
34 TIGR01314 gntK_FGGY gluconate 94.8 2.3 4.9E-05 43.0 17.4 123 85-224 321-446 (505)
35 PTZ00294 glycerol kinase-like 94.8 1.3 2.8E-05 44.8 15.7 141 67-225 309-452 (504)
36 COG0533 QRI7 Metal-dependent p 94.7 0.84 1.8E-05 45.0 13.6 169 39-222 125-307 (342)
37 TIGR01311 glycerol_kin glycero 94.6 3.1 6.7E-05 41.9 18.0 139 68-224 303-444 (493)
38 PRK00047 glpK glycerol kinase; 94.6 3.2 6.9E-05 41.8 18.1 141 66-224 305-448 (498)
39 PRK04123 ribulokinase; Provisi 94.2 3.1 6.7E-05 42.4 17.2 123 86-224 360-484 (548)
40 PLN02295 glycerol kinase 93.8 4.4 9.4E-05 41.1 17.2 145 62-224 305-457 (512)
41 PF01869 BcrAD_BadFG: BadF/Bad 93.3 0.063 1.4E-06 49.4 2.8 160 40-223 106-270 (271)
42 PRK15080 ethanolamine utilizat 92.7 4.6 9.9E-05 37.7 14.4 128 42-222 137-265 (267)
43 PTZ00340 O-sialoglycoprotein e 92.1 5.5 0.00012 39.3 14.5 165 38-216 123-303 (345)
44 PRK10331 L-fuculokinase; Provi 92.0 6.3 0.00014 39.4 15.2 76 141-224 357-434 (470)
45 PLN02669 xylulokinase 91.6 12 0.00026 38.8 17.1 76 141-224 415-490 (556)
46 PRK07058 acetate kinase; Provi 90.9 1.2 2.5E-05 44.8 8.6 139 39-199 200-346 (396)
47 PF03702 UPF0075: Uncharacteri 90.7 1 2.2E-05 44.6 8.0 150 39-196 157-308 (364)
48 TIGR02529 EutJ ethanolamine ut 90.5 8.4 0.00018 35.4 13.4 48 168-222 191-238 (239)
49 TIGR02707 butyr_kinase butyrat 90.4 1.2 2.5E-05 43.8 8.0 53 145-198 265-319 (351)
50 TIGR02628 fuculo_kin_coli L-fu 90.1 11 0.00025 37.6 15.0 115 88-225 323-439 (465)
51 KOG2517|consensus 88.5 5.4 0.00012 41.5 11.5 165 42-224 270-459 (516)
52 COG1070 XylB Sugar (pentulose 87.5 35 0.00077 34.7 17.1 127 61-196 295-425 (502)
53 PRK12440 acetate kinase; Revie 85.1 20 0.00044 36.2 13.1 148 39-200 200-349 (397)
54 PF00814 Peptidase_M22: Glycop 83.5 5.8 0.00013 37.2 8.2 147 39-209 104-254 (268)
55 PRK10939 autoinducer-2 (AI-2) 82.6 60 0.0013 33.0 15.8 75 142-224 378-454 (520)
56 PF00871 Acetate_kinase: Aceto 82.2 10 0.00022 37.9 9.7 142 40-196 199-345 (388)
57 PRK12379 propionate/acetate ki 80.9 10 0.00022 38.3 9.2 149 40-200 197-346 (396)
58 PRK00180 acetate kinase A/prop 80.8 4.7 0.0001 40.6 6.8 145 40-200 202-352 (402)
59 COG0068 HypF Hydrogenase matur 80.8 6.3 0.00014 42.5 8.0 66 141-210 663-728 (750)
60 PRK05082 N-acetylmannosamine k 80.4 49 0.0011 30.6 15.1 78 146-224 208-286 (291)
61 PRK00976 hypothetical protein; 79.0 70 0.0015 31.6 14.2 70 147-224 239-309 (326)
62 PF07318 DUF1464: Protein of u 76.9 25 0.00055 34.9 10.4 132 38-196 152-284 (343)
63 TIGR00744 ROK_glcA_fam ROK fam 75.7 17 0.00036 33.9 8.6 80 145-224 225-308 (318)
64 TIGR00143 hypF [NiFe] hydrogen 74.4 9.8 0.00021 40.9 7.4 65 142-210 629-693 (711)
65 PRK12397 propionate kinase; Re 71.9 9.2 0.0002 38.7 6.1 148 40-199 201-349 (404)
66 TIGR01175 pilM type IV pilus a 71.3 94 0.002 29.4 14.2 58 38-96 185-243 (348)
67 TIGR00016 ackA acetate kinase. 70.4 17 0.00038 36.7 7.7 149 39-200 205-356 (404)
68 COG0282 ackA Acetate kinase [E 69.6 11 0.00024 37.9 6.1 143 39-198 199-346 (396)
69 TIGR01174 ftsA cell division p 67.2 1.2E+02 0.0027 29.2 15.0 38 39-76 195-232 (371)
70 CHL00094 dnaK heat shock prote 66.7 41 0.00089 35.3 9.8 51 169-226 326-376 (621)
71 PF02543 CmcH_NodU: Carbamoylt 65.6 40 0.00087 33.2 9.0 176 42-225 14-212 (360)
72 TIGR02350 prok_dnaK chaperone 65.1 36 0.00077 35.3 9.0 50 170-226 323-372 (595)
73 PRK07157 acetate kinase; Provi 64.7 24 0.00053 35.6 7.4 150 38-200 197-349 (400)
74 PRK09557 fructokinase; Reviewe 63.5 46 0.00099 31.0 8.6 76 147-223 220-298 (301)
75 PF11104 PilM_2: Type IV pilus 60.0 1.6E+02 0.0035 28.1 14.0 116 40-196 180-298 (340)
76 TIGR01315 5C_CHO_kinase FGGY-f 58.9 2.2E+02 0.0048 29.2 16.9 103 105-224 382-488 (541)
77 PRK09585 anmK anhydro-N-acetyl 58.6 79 0.0017 31.5 9.7 150 41-196 160-310 (365)
78 PRK09698 D-allose kinase; Prov 56.0 65 0.0014 29.9 8.3 73 152-224 217-294 (302)
79 PTZ00186 heat shock 70 kDa pre 53.3 98 0.0021 33.1 9.9 50 169-225 351-400 (657)
80 PRK13310 N-acetyl-D-glucosamin 53.0 91 0.002 29.0 8.7 79 145-224 219-300 (303)
81 PRK09472 ftsA cell division pr 50.1 2.7E+02 0.0059 27.7 15.7 38 38-75 202-239 (420)
82 PTZ00009 heat shock 70 kDa pro 47.4 60 0.0013 34.4 7.2 52 169-226 330-381 (653)
83 PRK00290 dnaK molecular chaper 47.2 92 0.002 32.7 8.5 50 170-226 325-374 (627)
84 PTZ00400 DnaK-type molecular c 47.0 70 0.0015 34.0 7.7 50 170-226 366-415 (663)
85 PRK13411 molecular chaperone D 46.2 3.2E+02 0.0069 29.0 12.4 50 171-226 327-376 (653)
86 TIGR00854 pts-sorbose PTS syst 42.1 36 0.00078 29.6 3.9 52 160-215 14-65 (151)
87 PRK13928 rod shape-determining 42.1 3.1E+02 0.0067 26.0 12.6 76 141-224 238-321 (336)
88 PF03830 PTSIIB_sorb: PTS syst 41.5 28 0.00061 30.2 3.1 50 160-213 14-63 (151)
89 PF03309 Pan_kinase: Type III 39.5 40 0.00086 30.1 3.9 30 39-70 119-148 (206)
90 PRK10640 rhaB rhamnulokinase; 38.4 1.5E+02 0.0032 30.0 8.1 125 84-224 293-419 (471)
91 TIGR02627 rhamnulo_kin rhamnul 37.3 1.9E+02 0.0041 28.8 8.7 75 141-224 355-431 (454)
92 PRK11425 PTS system N-acetylga 36.6 48 0.001 29.0 3.9 53 160-216 16-68 (157)
93 cd00001 PTS_IIB_man PTS_IIB, P 35.1 54 0.0012 28.5 3.9 51 160-214 13-63 (151)
94 PLN03184 chloroplast Hsp70; Pr 35.0 3E+02 0.0065 29.4 10.2 50 170-226 364-413 (673)
95 PRK12408 glucokinase; Provisio 34.1 1.3E+02 0.0028 29.0 6.7 77 145-222 245-329 (336)
96 COG2441 Predicted butyrate kin 32.5 35 0.00076 33.6 2.5 62 38-99 161-249 (374)
97 PRK13410 molecular chaperone D 30.8 2.5E+02 0.0054 30.0 8.7 50 170-226 327-376 (668)
98 PRK00292 glk glucokinase; Prov 28.1 2.1E+02 0.0046 26.9 7.0 78 146-223 228-312 (316)
99 COG2377 Predicted molecular ch 27.7 1.3E+02 0.0029 30.2 5.7 147 38-196 161-314 (371)
100 COG2192 Predicted carbamoyl tr 27.3 95 0.0021 32.9 4.8 148 71-226 173-335 (555)
101 PRK13320 pantothenate kinase; 25.5 1.1E+02 0.0024 28.4 4.5 101 39-181 113-213 (244)
102 PRK13318 pantothenate kinase; 24.9 5.5E+02 0.012 23.6 11.4 28 41-70 125-152 (258)
103 PF13289 SIR2_2: SIR2-like dom 23.4 3.8E+02 0.0083 21.3 8.0 54 142-201 61-114 (143)
104 PRK15088 PTS system mannose-sp 22.7 1.5E+02 0.0033 28.9 5.0 51 160-214 177-227 (322)
105 PF12512 DUF3717: Protein of u 22.4 48 0.001 25.9 1.2 16 236-251 3-18 (71)
106 PRK13322 pantothenate kinase; 21.3 1.1E+02 0.0024 28.4 3.6 101 39-181 115-216 (246)
107 PRK13324 pantothenate kinase; 21.1 1.3E+02 0.0029 28.3 4.2 32 39-72 123-154 (258)
No 1
>KOG2201|consensus
Probab=100.00 E-value=1.4e-88 Score=642.21 Aligned_cols=223 Identities=61% Similarity=1.049 Sum_probs=215.2
Q ss_pred CchhhchhhhhhhcCCCccEEeeCCCCCceeeccCC--CCCCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHH
Q psy11663 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAE--PNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGL 78 (297)
Q Consensus 1 m~clv~G~~fll~~i~~e~f~y~~~~~~~~~~~~~~--~~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL 78 (297)
|+|||+|++|+++|+|+|||+|+++.+++++++... +++||||||||||||||+||+++++|+|||||++||||||||
T Consensus 133 m~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d~~yPyLLVNIGSGVSIlkV~~~~~feRvgGsSlGGGTf~GL 212 (371)
T KOG2201|consen 133 MDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLDSPYPYLLVNIGSGVSILKVDGPDNFERVGGSSLGGGTFLGL 212 (371)
T ss_pred HHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccCCCCceEEEEcCCCeEEEEEecCCceeEecccccCCcchhhh
Confidence 899999999999999999999999999998887742 569999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHH
Q psy11663 79 GSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISND 158 (297)
Q Consensus 79 ~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~n 158 (297)
++||||+++|||+++||++||+++|||||+||||++|+++|||++++||||||+... +++..++|||+|+|||.||+||
T Consensus 213 ~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg~y~~fGL~~~~iASSFGk~~~~-eK~~~~s~eDia~SlL~mIsnN 291 (371)
T KOG2201|consen 213 GSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGGDYSRFGLKGDLIASSFGKVIRK-EKELSVSKEDIARSLLRMISNN 291 (371)
T ss_pred HhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCccHhhcCCChhHHHHHHHHHhhc-ccccccChHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999864 4556799999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 159 IGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 159 IgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
|||+|+|+|+++|++||||+|+|||+||++|++|+||++|||+|++||+|||||||+||+||||++
T Consensus 292 IGqiAyl~A~~~ni~rV~FgG~fiR~~~itM~tLsyAi~fWSkG~~kAlFLrHEGYlGalGAfL~~ 357 (371)
T KOG2201|consen 292 IGQIAYLCALNENIKRVYFGGFFIRGHPITMKTLSYAINFWSKGELKALFLRHEGYLGALGAFLSY 357 (371)
T ss_pred HHHHHHHHHHHhCccEEEEeeeEEecCceehHHHHHHHHHhccchHHhHhhhccchhHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 2
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=100.00 E-value=3.2e-78 Score=579.44 Aligned_cols=224 Identities=58% Similarity=1.058 Sum_probs=195.9
Q ss_pred CchhhchhhhhhhcCCCccEEeeCCCCCce-e-eccCCCCCCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHH
Q psy11663 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEY-D-FQLAEPNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGL 78 (297)
Q Consensus 1 m~clv~G~~fll~~i~~e~f~y~~~~~~~~-~-~~~~~~~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL 78 (297)
|+|||+|++||++++|+|+|+|+++.+++. . .+...+++||||||||||||||++|+++++|+|||||+|||||||||
T Consensus 115 m~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~~~~PyllvniGsGvSi~~v~~~~~~~rvgGs~iGGgT~~GL 194 (341)
T PF03630_consen 115 MECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNSDIYPYLLVNIGSGVSILKVEGPNQFERVGGSSIGGGTFWGL 194 (341)
T ss_dssp HHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTSS-SSEEEEEESSSEEEEEEEETTEEEEEEEES-SHHHHHHH
T ss_pred HHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCCCCCcEEEEEcCCceEEEEEeCCCceEEEeccccchHhHHHH
Confidence 799999999999999999999998766652 1 22346899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHH
Q psy11663 79 GSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISND 158 (297)
Q Consensus 79 ~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~n 158 (297)
++||||++||||+++||++||+++|||+|+||||++|+++|||+|+|||||||+....+..+++++||+|||||+||++|
T Consensus 195 ~~llt~~~~~~e~~~la~~G~~~~vDllV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Dia~sll~mv~~n 274 (341)
T PF03630_consen 195 CSLLTGCKSFDEILELAKKGDNSNVDLLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDIAKSLLNMVSNN 274 (341)
T ss_dssp HHHHH---SHHHHHHHHHH--GGGTSEEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHhcCCCccccCceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999995333347899999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 159 IGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 159 IgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
|||+|+++|+++|++||||+|+|+|+||.+|+++++|++|||+++++|+||||+||+|||||||+.
T Consensus 275 Ig~la~l~A~~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 275 IGQLAYLHAKIHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HHHHHHHHHHHHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999974
No 3
>PLN02920 pantothenate kinase 1
Probab=100.00 E-value=5.7e-76 Score=569.97 Aligned_cols=224 Identities=53% Similarity=0.977 Sum_probs=208.2
Q ss_pred CchhhchhhhhhhcCCCccEEeeCCCCCceeeccCCCCCCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHH
Q psy11663 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGS 80 (297)
Q Consensus 1 m~clv~G~~fll~~i~~e~f~y~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~ 80 (297)
|+|+|+|++||++++|+|+|+|++..+ ++ .+...+++||||||||||||||+||+++++|+|||||+|||||||||++
T Consensus 128 m~~li~Gl~fLl~~~~~e~f~y~~~~~-~~-~~~~~~~lyPyLLVNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~ 205 (398)
T PLN02920 128 MDCLVTGANFLLKAVHHEAFTYLDGQK-EF-VQIDHNDLYPYLLVNIGSGVSMIKVDGDGKFERVSGTSVGGGTFWGLGK 205 (398)
T ss_pred HHHHHHHHHHHHhhCCcceeEeccCcc-cc-cccCccccCceEEEEcCCCEEEEEEeCCCcEEEEcccccchHhHHHHHH
Confidence 799999999999999999999987432 22 2223468999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHhcCCCCCCceeeccccCC-CCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHH
Q psy11663 81 LLTKAKGFDELLELAEKGDHRHADMLVRDIYGG-DYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDI 159 (297)
Q Consensus 81 LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~-~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nI 159 (297)
|||++.||||+++||++||+++|||+|+||||+ +|+++|||+|+|||||||+....++.+++++||+|||||.||++||
T Consensus 206 LLtg~~sfdEll~lA~~Gd~~nvDllVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nI 285 (398)
T PLN02920 206 LLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNI 285 (398)
T ss_pred HHcCCCCHHHHHHHHhCCCccccCceeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 8999999999999999999743233367999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 160 GQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 160 gqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
||+|+++|+++|++||||+|+|+|+||.+|++|++|++|||+++++|+||||+||+|||||||+...
T Consensus 286 gqiA~L~A~~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~~ 352 (398)
T PLN02920 286 GQISYLNALRFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYEK 352 (398)
T ss_pred HHHHHHHHHHcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998755
No 4
>PLN02902 pantothenate kinase
Probab=100.00 E-value=8.1e-75 Score=600.93 Aligned_cols=270 Identities=47% Similarity=0.833 Sum_probs=228.6
Q ss_pred CchhhchhhhhhhcCCCccEEeeCCCCCceeeccCCCCCCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHH
Q psy11663 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGS 80 (297)
Q Consensus 1 m~clv~G~~fll~~i~~e~f~y~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~ 80 (297)
|+|+|+|++|+++++|+|+|+|..... + ..+....++||||||||||||||+||+++++|+|||||+|||||||||++
T Consensus 177 m~~li~Gl~fLl~~i~~e~f~~~~~~~-~-~~~~~~~~lyPyLLVNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~ 254 (876)
T PLN02902 177 MDCLVAGANFLLKAIRHEAFTHMEGEK-E-FVQIDQNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGR 254 (876)
T ss_pred HHHHHHHHHHHHhhCcchheeeccccc-c-ccccCccCCCceEEEEcCCceEEEEEecCCcEEEecccccccHhHHHHHH
Confidence 899999999999999999999975322 1 12223468999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHhcCCCCCCceeeccccCC-CCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHH
Q psy11663 81 LLTKAKGFDELLELAEKGDHRHADMLVRDIYGG-DYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDI 159 (297)
Q Consensus 81 LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~-~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nI 159 (297)
||||+.||||+++||++||+++|||+|+||||+ +|+++|||+|+|||||||+....+..+++++||+|||||.||+|||
T Consensus 255 LLtg~~sFdEll~LA~~Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NI 334 (876)
T PLN02902 255 LLTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNI 334 (876)
T ss_pred HHcCCCCHHHHHHHHhcCCccccCeeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997 8999999999999999999743334457999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcccCcccccccchhH
Q psy11663 160 GQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAECGACQVSYHPLSM 239 (297)
Q Consensus 160 gqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~~~~~~~s~~~~~~ 239 (297)
||+|+++|++||++||||+|+|||+||.+|++|+||++|||+|+++|+|||||||+|||||||++.+....+.- +
T Consensus 335 GqiA~L~A~~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~~~~~~~~~-----~ 409 (876)
T PLN02902 335 GQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLM-----A 409 (876)
T ss_pred HHHHHHHHHHcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCCcccccccc-----c
Confidence 99999999999999999999999999999999999999999999999999999999999999998653222211 1
Q ss_pred HHHHHHhhhcccccceeeeeccccchhhhhhhhcccc-cC-cccccccccceecc
Q psy11663 240 HTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE-CG-ACQVRLGLKYIRQT 292 (297)
Q Consensus 240 ~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~~~~-~~-~~~~~~~~~~~~~~ 292 (297)
+. .++ -|+.---|. |-.+.++. .| ..+++|+|||+..+
T Consensus 410 ~~---~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~w~e~~~~~~ 449 (876)
T PLN02902 410 HQ---LVE---------RFPMGAPYT---GGNIHGPPLGDLNEKISWMEKFVQKG 449 (876)
T ss_pred hh---hhh---------hhccccccc---cccccCCccccccccccHHHHhhhcC
Confidence 11 111 122111221 34444443 44 78899999998654
No 5
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=6.8e-69 Score=586.35 Aligned_cols=228 Identities=36% Similarity=0.644 Sum_probs=205.5
Q ss_pred CchhhchhhhhhhcCCCccEEeeCCCCCc--eeecc---CCCCCCCeEEEEcCCceEEEEEecC-CceEEecccccChhh
Q psy11663 1 MECLIQGCNFLLRNISDEAFVYNRHGNPE--YDFQL---AEPNIFPYLLVNIGSGVSIMKVESD-SKVERIGGTATGGGT 74 (297)
Q Consensus 1 m~clv~G~~fll~~i~~e~f~y~~~~~~~--~~~~~---~~~~~~PyLlVNIGSGvSi~kV~~~-~~~~RIgGS~IGGGT 74 (297)
|+|||+|++|+++++|+|+|+|+...... +.+++ ...++||||||||||||||+||+++ ++|+|||||+|||||
T Consensus 1170 m~~li~G~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~yp~llvNIGSGvSi~kv~~~~~~~~RvgGt~iGGGT 1249 (1452)
T PTZ00297 1170 MDAVVKGLNLVIRVAPESIFTVDPSTGVHHPHQLVSPPGDGFSPFPCLLVNIGSGISIIKCLGPDGSHVRVGGSPIGGAT 1249 (1452)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccccccccccCccccCCCCceEEEEccCceEEEEEecCCCcEEEecCcccccHh
Confidence 89999999999999999999998653322 23322 3467999999999999999999997 589999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHH---HHhcCCCCCCceeeccccCCCCCCC--CCCccccccccccccccC-------------
Q psy11663 75 FWGLGSLLTKAKGFDELLE---LAEKGDHRHADMLVRDIYGGDYKCL--GLPGDLIASSFGRVCKQD------------- 136 (297)
Q Consensus 75 ~~GL~~LLt~~~~fdeil~---lA~~Gd~~~vDllV~DIYg~~~~~~--gL~~d~~ASsFGK~~~~~------------- 136 (297)
||||++||||++||||+++ ||++||++||||+|+||||++|..+ |||+|+|||||||+....
T Consensus 1250 ~~GL~~llt~~~~f~e~l~~~~la~~Gd~~~vDllVgDIyg~~~~~~~~~L~~~~iASsfGk~~~~~~~~~~~~~~~~~~ 1329 (1452)
T PTZ00297 1250 FWGLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDLLVGDIYGYNAKDLPAMLSVDTVASTFGKLGTERFYEMMRGVSTAHF 1329 (1452)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhCCCccccceEEeeccCCCcccccCCCCcceeeeccCccccccccccccccccccc
Confidence 9999999999999999998 7999999999999999999887654 899999999999995210
Q ss_pred ---------------------------CccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcH
Q psy11663 137 ---------------------------TMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSM 189 (297)
Q Consensus 137 ---------------------------~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m 189 (297)
+.++++++||+|||||.||+|||||+|+|+|+.||++||||+|+|||+||.+|
T Consensus 1330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~ 1409 (1452)
T PTZ00297 1330 SDDDAAGEILSPKALKSPTVISELPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIW 1409 (1452)
T ss_pred ccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHH
Confidence 01234889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcccC
Q psy11663 190 HTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAECG 228 (297)
Q Consensus 190 ~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~~~ 228 (297)
++|+||++|||+|+++|+|||||||+|||||||+..+.+
T Consensus 1410 ~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~~~~~ 1448 (1452)
T PTZ00297 1410 SHISSTMKYWSKGECHAHFLEHDGYLGALGCATLDPDGD 1448 (1452)
T ss_pred HHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcCCCcc
Confidence 999999999999999999999999999999999986644
No 6
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-68 Score=489.03 Aligned_cols=225 Identities=50% Similarity=0.806 Sum_probs=210.0
Q ss_pred CchhhchhhhhhhcCCCccEEeeCCCCCceeec---cCCCCCCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHH
Q psy11663 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQ---LAEPNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWG 77 (297)
Q Consensus 1 m~clv~G~~fll~~i~~e~f~y~~~~~~~~~~~---~~~~~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~G 77 (297)
|+||++|++|+..+||+|+|++++..... .++ ...+++|||++|||||||||+||+++++|+|||||++||||+||
T Consensus 104 me~li~gl~~fv~~IP~evFv~~d~~~e~-~~~~~~~~~h~lypyilvNiGsGvSilkvtgpsqf~RvGGsslGGGtlwG 182 (342)
T COG5146 104 MEILINGLNYFVINIPAEVFVEFDAASEG-LGILLKEQGHDLYPYILVNIGSGVSILKVTGPSQFERVGGSSLGGGTLWG 182 (342)
T ss_pred HHHHHhcccceeeeccHHHeeeeccccch-hhhhhhhccccccceeeEeccCCeEEEEecCcchhccccccccCcchHHH
Confidence 89999999999999999999999865332 222 23578999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCCCccccccccccccccC-CccCCCCHHHHHHHHHHHHH
Q psy11663 78 LGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQD-TMEGQCSEADLARSLLFAIS 156 (297)
Q Consensus 78 L~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~-~~~~~~s~eDia~SLl~Mv~ 156 (297)
|.+|||+..||||+++||+.|||+.|||+|+||||.+|+++|||+|++||||||+.... ++.+++.+.|+++|||..|+
T Consensus 183 LlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg~dy~~~glks~~iAssFGkVf~~r~k~le~F~p~di~~sll~ais 262 (342)
T COG5146 183 LLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGLKSDLIASSFGKVFHHRDKPLEEFTPSDILASLLGAIS 262 (342)
T ss_pred HHHHHcccccHHHHHHHHhcCCCccceeeehhhccCccccCCCCchhhHHHHHHHHHhhcCchhhcCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987421 23367999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 157 NDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 157 ~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
+||||+|+++||.+|+.+|||+|+|.|+|-.+|.+++||+.|||+..++|+|+|||||+||+|||+.+..
T Consensus 263 nnigqiAyl~A~~~n~qNIyfgGSf~rnhl~tm~tl~Yai~~ws~~t~~ayfl~hegylGa~GAf~~~at 332 (342)
T COG5146 263 NNIGQIAYLVAREFNTQNIYFGGSFHRNHLLTMVTLDYAILRWSKPTMNAYFLEHEGYLGAIGAFYLGAT 332 (342)
T ss_pred cchhhhHHHHHHhhccceEEEeeeeccchhhhhhhhHHHHHhhcCcccceeeeeccchhhHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999755
No 7
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=100.00 E-value=1e-63 Score=468.20 Aligned_cols=199 Identities=53% Similarity=0.900 Sum_probs=189.3
Q ss_pred CchhhchhhhhhhcCCCccEEeeCCCCCceeeccCCCCCCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHH
Q psy11663 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGS 80 (297)
Q Consensus 1 m~clv~G~~fll~~i~~e~f~y~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~ 80 (297)
|+|+++|++|++.+.|+ +++||||+|||||||||++|+++ +|+|||||+|||||||||++
T Consensus 81 ~~a~~~g~~~ll~~~~~-------------------~~~~p~llvnIGsGvSi~~v~~~-~~~Rv~Gt~iGGGTf~GL~~ 140 (279)
T TIGR00555 81 FDALIQGLNYLLKEEPK-------------------DDIYPYLLVNIGTGTSILYVDGD-NYERVGGTSLGGGTFLGLGK 140 (279)
T ss_pred HHHHHHHHHHHhhcccC-------------------CCCCceEEEEecCCeEEEEEcCc-cEEEEcCccccHHHHHHHHH
Confidence 68999999999877765 56799999999999999999998 99999999999999999999
Q ss_pred hhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH
Q psy11663 81 LLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG 160 (297)
Q Consensus 81 LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg 160 (297)
||||+.||+|+++||++||++++||+|+||||++|+++|||+|+|||||||+..+ ..++.+++||+|+||+.||++|||
T Consensus 141 LL~~~~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~-~~~~~~~~eDiAaSLl~mV~~nIg 219 (279)
T TIGR00555 141 LLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSK-HLDQSFSPEDIAASLLGLIGNNIG 219 (279)
T ss_pred HHcCCCCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhcc-ccccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999742 235789999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHh
Q psy11663 161 QIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLR 223 (297)
Q Consensus 161 qlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~ 223 (297)
|+|+++|++++++||+|+|++++.||.+|+.++++++||+ .+++||||++|+|||||+|.
T Consensus 220 ~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~---~~~ifp~h~~y~gAlGAaL~ 279 (279)
T TIGR00555 220 QIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWS---KKALFLEHEGYSGAIGALLS 279 (279)
T ss_pred HHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcC---ceEEEECCcchHHHhhhccC
Confidence 9999999999999999999999999999999999999999 89999999999999999973
No 8
>PRK13317 pantothenate kinase; Provisional
Probab=100.00 E-value=7.6e-47 Score=353.46 Aligned_cols=198 Identities=33% Similarity=0.591 Sum_probs=179.3
Q ss_pred CchhhchhhhhhhcCCCccEEeeCCCCCceeeccCCCCCCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHH
Q psy11663 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGS 80 (297)
Q Consensus 1 m~clv~G~~fll~~i~~e~f~y~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~ 80 (297)
|+|+++|++|++++. ..+.+||++||||||+|+++|+++ +++|++||++||||+|||++
T Consensus 77 ~~a~~~g~~~l~~~~--------------------~~~~~~~~i~~iG~g~si~~~~g~-~~~r~~Gt~iGGgt~~gL~~ 135 (277)
T PRK13317 77 FEATGLGVRYLLKEE--------------------GHDLNDYIFTNIGTGTSIHYVDGN-SQRRVGGTGIGGGTIQGLSK 135 (277)
T ss_pred HHHHHHHHHHHHHhc--------------------CCCCCcEEEEEecCceEEEEEeCC-ceEEEccccccHHHHHHHHH
Confidence 468888888877531 246689999999999999999886 89999999999999999999
Q ss_pred hhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH
Q psy11663 81 LLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG 160 (297)
Q Consensus 81 LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg 160 (297)
||++..||+|+++||++||++++||+|+|||+.+++ ++|.+.+|++|||+.. ...+.+++||+|+||+.||+++|+
T Consensus 136 lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~--~l~i~s~csvFakv~~--l~~~g~~~eDIaasl~~~v~~~I~ 211 (277)
T PRK13317 136 LLTNISDYEQLIELAKHGDRNNIDLKVGDIYKGPLP--PIPGDLTASNFGKVLH--HLDSEFTSSDILAGVIGLVGEVIT 211 (277)
T ss_pred HHhCCCCHHHHHHHHhcCCCccccceeccccCCCCC--CCCCceeEehhhhhhh--hhccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998766 5899999999999763 334678999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 161 QIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 161 qlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
++|+++|+.+++++|+|+|++++.||.+++.++ ++|+.++.+++||+|++|+|||||+|...+
T Consensus 212 ~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~---~~l~~~~~~~~~p~~~~~~gAlGAaL~a~~ 274 (277)
T PRK13317 212 TLSIQAAREKNIENIVYIGSTLTNNPLLQEIIE---SYTKLRNCTPIFLENGGYSGAIGALLLATN 274 (277)
T ss_pred HHHHHHHHhcCCCeEEEECcccccCHHHHHHHH---HHHhcCCceEEecCCCchhHHHHHHHHhhh
Confidence 999999999999999999999999998888776 578888999999999999999999997644
No 9
>KOG2201|consensus
Probab=99.77 E-value=5.3e-20 Score=175.71 Aligned_cols=46 Identities=54% Similarity=1.057 Sum_probs=42.5
Q ss_pred ccccchhHHHHHHHhhhcccccceeeeeccccchhhhhhhhccccc
Q psy11663 232 VSYHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAEC 277 (297)
Q Consensus 232 ~s~~~~~~~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~~~~~ 277 (297)
+|.||+||+||||||+|||||++||+||||||||||+||||+....
T Consensus 315 iR~~~itM~tLsyAi~fWSkG~~kAlFLrHEGYlGalGAfL~~~~~ 360 (371)
T KOG2201|consen 315 IRGHPITMKTLSYAINFWSKGELKALFLRHEGYLGALGAFLSYELQ 360 (371)
T ss_pred EecCceehHHHHHHHHHhccchHHhHhhhccchhHHHHHHhhhhhh
Confidence 3679999999999999999999999999999999999999986443
No 10
>PLN02902 pantothenate kinase
Probab=99.46 E-value=1.4e-14 Score=152.52 Aligned_cols=47 Identities=51% Similarity=1.019 Sum_probs=44.7
Q ss_pred ccccchhHHHHHHHhhhcccccceeeeeccccchhhhhhhhcccccC
Q psy11663 232 VSYHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAECG 278 (297)
Q Consensus 232 ~s~~~~~~~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~~~~~~ 278 (297)
+|.||+||++|||||+|||||++||+|||||||+||+||||+..++.
T Consensus 357 Ir~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~~~~ 403 (876)
T PLN02902 357 IRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHG 403 (876)
T ss_pred ecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCCccc
Confidence 58999999999999999999999999999999999999999988854
No 11
>PTZ00297 pantothenate kinase; Provisional
Probab=99.38 E-value=1.5e-13 Score=152.51 Aligned_cols=49 Identities=41% Similarity=0.744 Sum_probs=46.2
Q ss_pred ccccchhHHHHHHHhhhcccccceeeeeccccchhhhhhhhcccccCcc
Q psy11663 232 VSYHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAECGAC 280 (297)
Q Consensus 232 ~s~~~~~~~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~~~~~~~~ 280 (297)
+|.||++|++|+||++|||||++||+|||||||+||+||||+..++++.
T Consensus 1402 i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~~~~~~~ 1450 (1452)
T PTZ00297 1402 VRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLDPDGDAA 1450 (1452)
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcCCCcccc
Confidence 3679999999999999999999999999999999999999999998854
No 12
>PLN02920 pantothenate kinase 1
Probab=99.36 E-value=3e-13 Score=132.67 Aligned_cols=46 Identities=46% Similarity=0.936 Sum_probs=42.9
Q ss_pred ccccchhHHHHHHHhhhcccccceeeeeccccchhhhhhhhccccc
Q psy11663 232 VSYHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAEC 277 (297)
Q Consensus 232 ~s~~~~~~~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~~~~~ 277 (297)
+|.||++|++||+|++|||+|++||+|||||||+||+||||+...+
T Consensus 308 ir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~~~ 353 (398)
T PLN02920 308 IRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYEKH 353 (398)
T ss_pred ccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcccc
Confidence 4789999999999999999999999999999999999999986654
No 13
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=99.34 E-value=4.7e-13 Score=129.45 Aligned_cols=43 Identities=56% Similarity=1.196 Sum_probs=40.1
Q ss_pred ccccchhHHHHHHHhhhcccccceeeeeccccchhhhhhhhcc
Q psy11663 232 VSYHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 274 (297)
Q Consensus 232 ~s~~~~~~~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~~ 274 (297)
+|.||++|++|+|||+|||+|+++|+|||||||+||+||||+.
T Consensus 298 ~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 298 IRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp GTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred ccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 5789999999999999999999999999999999999999974
No 14
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=99.31 E-value=7.4e-13 Score=123.36 Aligned_cols=46 Identities=50% Similarity=0.856 Sum_probs=43.0
Q ss_pred cccchhHHHHHHHhhhcccccceeeeeccccchhhhhhhhcccccC
Q psy11663 233 SYHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAECG 278 (297)
Q Consensus 233 s~~~~~~~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~~~~~~ 278 (297)
|+|-++|+|++|||+||||+.++|+|||||||+||+|||++++...
T Consensus 289 rnhl~tm~tl~Yai~~ws~~t~~ayfl~hegylGa~GAf~~~at~~ 334 (342)
T COG5146 289 RNHLLTMVTLDYAILRWSKPTMNAYFLEHEGYLGAIGAFYLGATSQ 334 (342)
T ss_pred cchhhhhhhhHHHHHhhcCcccceeeeeccchhhHHHHHhhccccC
Confidence 5799999999999999999999999999999999999999977544
No 15
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=99.00 E-value=7.5e-09 Score=102.34 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=118.5
Q ss_pred CeEEEEcCCceE-EEEEecCCceE--Eeccccc--ChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCC
Q psy11663 41 PYLLVNIGSGVS-IMKVESDSKVE--RIGGTAT--GGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDY 115 (297)
Q Consensus 41 PyLlVNIGSGvS-i~kV~~~~~~~--RIgGS~I--GGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~ 115 (297)
...|++||.==| .++++ ++.-. +++++.- +|+++..++++| .-+++|+-++|.+++.+++|+...++
T Consensus 242 v~TIIDIGGQDsK~I~l~-~G~v~dF~MNdkCAAGTGrFLE~~A~~L--gi~ieEl~~lA~~~~~~pv~IsS~Ct----- 313 (404)
T TIGR03286 242 PATVIDIGGMDNKAISVW-DGIPDNFTMGGICAGASGRFLEMTAKRL--GVDITELGKLALKGMPEKVRMNSYCI----- 313 (404)
T ss_pred CcEEEEeCCCceEEEEEc-CCceeeEEEcCcccccCcHHHHHHHHHh--CCCHHHHHHHHHhCCCCCCCccCccc-----
Confidence 478999997433 55553 33333 8999998 889999999999 46999999999999988999988766
Q ss_pred CCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcE-EEEeccccccchhcHHHHHH
Q psy11663 116 KCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKK-VYFGGYFLRNHPLSMHTISF 194 (297)
Q Consensus 116 ~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~-Ivf~G~fi~~~~~~m~~l~~ 194 (297)
.+..+.-..+.++| .++|||+++|..+|+.++.. ..++..++++ |+|+|.. ..|+-..+.++.
T Consensus 314 -VFaeSevIsll~~G-----------~~~eDIaAGl~~SIa~rv~~---~l~~~~~i~~~VvftGGv-a~N~gvv~ale~ 377 (404)
T TIGR03286 314 -VFGIQDLVTALAEG-----------ASPEDVAAAACHSVAEQVYE---QQLQEIDVREPVILVGGT-SLIEGLVKALGD 377 (404)
T ss_pred -ccccHhHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHH---HHhhcCCCCCcEEEECCh-hhhHHHHHHHHH
Confidence 23343344455555 57899999999999999976 4567778886 9999985 556655555554
Q ss_pred HhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 195 SIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 195 av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
-. +.+.++++|++|.|||||.|-.
T Consensus 378 ~L------g~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 378 LL------GIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred Hh------CCcEEECCcccHHHHHHHHHHh
Confidence 33 5789999999999999999854
No 16
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=98.39 E-value=1.5e-07 Score=89.18 Aligned_cols=38 Identities=47% Similarity=0.921 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHhhhcccccceeeeeccccchhhhhhhhc
Q psy11663 233 SYHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLR 273 (297)
Q Consensus 233 s~~~~~~~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~ 273 (297)
+.||.+|+++++|++||| ++++|+|||||+||+||+|.
T Consensus 242 ~~~~~l~~~~~~~~~~~~---~~~ifp~h~~y~gAlGAaL~ 279 (279)
T TIGR00555 242 RNNQLLMKVLSYATNFWS---KKALFLEHEGYSGAIGALLS 279 (279)
T ss_pred cCCHHHHHHHHHHHhhcC---ceEEEECCcchHHHhhhccC
Confidence 579999999999999999 99999999999999999974
No 17
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.12 E-value=6.6e-05 Score=68.85 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=98.1
Q ss_pred EEEEcCCc-eEEEEEecCCceE---EecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCC
Q psy11663 43 LLVNIGSG-VSIMKVESDSKVE---RIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCL 118 (297)
Q Consensus 43 LlVNIGSG-vSi~kV~~~~~~~---RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~ 118 (297)
-|+.||.. +.++.++ +++.. .-.-.+.|+|.|.--..-..| -+++|+-+++.+++. +
T Consensus 94 ~vidiGgqd~k~i~~~-~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~-~~~~e~~~~~~~~~~-------------~---- 154 (248)
T TIGR00241 94 GVIDIGGQDSKVIKID-DGKVDDFTMNDKCAAGTGRFLEVTARRLG-VSVEELGSLAEKADR-------------K---- 154 (248)
T ss_pred EEEEecCCeeEEEEEC-CCcEeeeeecCcccccccHHHHHHHHHcC-CCHHHHHHHHhcCCC-------------C----
Confidence 48888654 6677776 44333 222245666644443333345 589999999888653 0
Q ss_pred CCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEeccccccchhcHHHHHHHhh
Q psy11663 119 GLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLK-KVYFGGYFLRNHPLSMHTISFSIK 197 (297)
Q Consensus 119 gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik-~Ivf~G~fi~~~~~~m~~l~~av~ 197 (297)
.+-+.+.+-|.+-.-.....+..+++|++++++..++++|..++ +..+++ +|+++|...+ |+..++.++..+
T Consensus 155 -~~~~~~c~vf~~s~vi~~l~~g~~~~di~~~~~~~va~~i~~~~----~~~~~~~~Vvl~GGva~-n~~l~~~l~~~l- 227 (248)
T TIGR00241 155 -AKISSMCTVFAESELISLLAAGVKKEDILAGVYESIAERVAEML----QRLKIEAPIVFTGGVSK-NKGLVKALEKKL- 227 (248)
T ss_pred -CCcCCEeEEEechhHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----hhcCCCCCEEEECcccc-CHHHHHHHHHHh-
Confidence 11122233454422111112457899999999999999999754 445677 9999999755 677777777544
Q ss_pred hhccCCceEEEeccCCchhhHHHHH
Q psy11663 198 YWSKGAVQSLFLRHEGYLGAIGAFL 222 (297)
Q Consensus 198 fws~g~~~a~Fl~h~gY~GAlg~~l 222 (297)
+.+...++|+++.||+||.|
T Consensus 228 -----g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 228 -----GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred -----CCcEEcCCCccHHHHHHHHh
Confidence 46778899999999999987
No 18
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.23 E-value=0.0059 Score=61.21 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=98.9
Q ss_pred EEEEcCCceE-EEEEecCC---ceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCC
Q psy11663 43 LLVNIGSGVS-IMKVESDS---KVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCL 118 (297)
Q Consensus 43 LlVNIGSGvS-i~kV~~~~---~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~ 118 (297)
-|+.||.=-+ ++++++++ .|..=.=.+=|-|.|+--.--..+. +.+|+-++|.+.++ .+.
T Consensus 270 TIIDIGGQDsK~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi-~leEl~~lA~~a~~-pv~-------------- 333 (432)
T TIGR02259 270 TVLDIGGQDTKGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNM-GLHELGPLAMKSSK-PAR-------------- 333 (432)
T ss_pred EEEEeCCCceEEEEEcCCCcEeeeeecCcccccchHHHHHHHHHcCC-CHHHHHHHHhcCCC-CCC--------------
Confidence 3455554333 55555433 2222233445778888777777774 89999999988653 111
Q ss_pred CCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEeccccccchhcHHHHHHHhh
Q psy11663 119 GLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKL-KKVYFGGYFLRNHPLSMHTISFSIK 197 (297)
Q Consensus 119 gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~i-k~Ivf~G~fi~~~~~~m~~l~~av~ 197 (297)
+ +...+=|.+-.-.....+..++|||+++|...|+.++.++ ..+..++ ++|+|+|..- .|+-..+.++..+.
T Consensus 334 -I--SS~CtVFAESEVIslla~G~~reDIaAGL~~SIA~Rv~s~---l~r~~~i~~~VvftGGvA-~N~gvv~aLe~~L~ 406 (432)
T TIGR02259 334 -I--NSTCTVFAGAELRDRLALGDKREDILAGLHRAIILRAISI---ISRSGGITDQFTFTGGVA-KNEAAVKELRKLIK 406 (432)
T ss_pred -c--CCcceEEehHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HhcccCCCCCEEEECCcc-ccHHHHHHHHHHHc
Confidence 2 1122345542211122467899999999999999987765 4444344 4899999874 46766666665441
Q ss_pred hhccCCceEEEeccCCchhhHHHHHh
Q psy11663 198 YWSKGAVQSLFLRHEGYLGAIGAFLR 223 (297)
Q Consensus 198 fws~g~~~a~Fl~h~gY~GAlg~~l~ 223 (297)
=- .++.+.+.++|+.|.|||||.|-
T Consensus 407 ~~-~~~~~V~Vp~~pq~~GALGAAL~ 431 (432)
T TIGR02259 407 EN-YGEVQINIDPDSIYTGALGASEF 431 (432)
T ss_pred cc-cCCCeEecCCCccHHHHHHHHHh
Confidence 00 13567888999999999999873
No 19
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.22 E-value=0.0021 Score=60.81 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=84.0
Q ss_pred cccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHH
Q psy11663 68 TATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADL 147 (297)
Q Consensus 68 S~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDi 147 (297)
.+=|-|.|+--..-..+ -+.+|+-++|.+.+. .++ + +...+=|.+-.-.....+-.++|||
T Consensus 129 CAAGTG~FLe~~A~~L~-i~leel~~~a~~~~~-~~~---------------i--ss~CtVFaeSevi~~~~~G~~~edI 189 (262)
T TIGR02261 129 CASGSGQFLENIARYLG-IAQDEIGSLSQQADN-PEK---------------V--SGICAVLAETDVINMVSRGISAPNI 189 (262)
T ss_pred ccccccHHHHHHHHHhC-CCHHHHHHHHhcCCC-CCC---------------c--CCCceEEchhhHHHHHHCCCCHHHH
Confidence 34577888887777777 488999999887642 221 1 1122334442111112467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHh
Q psy11663 148 ARSLLFAISNDIGQIASLYAMMHKLK-KVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLR 223 (297)
Q Consensus 148 a~SLl~Mv~~nIgqlA~l~A~~~~ik-~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~ 223 (297)
+++|...|+.++..+ ..+....+ +|+|+|.. ..|+...+.++..+.= .+..+...-++|+.|.||+||.|-
T Consensus 190 ~aGl~~sia~r~~~~---~~~~~~~~~~v~~~GGv-a~n~~~~~~le~~l~~-~~~~~~v~~~~~~q~~gAlGAAl~ 261 (262)
T TIGR02261 190 LKGIHESMADRLAKL---LKSLGALDGTVLCTGGL-ALDAGLLEALKDAIQE-AKMAVAAENHPDAIYAGAIGAALW 261 (262)
T ss_pred HHHHHHHHHHHHHHH---HhccCCCCCcEEEECcc-cccHHHHHHHHHHhcc-CCcceEecCCCcchHHHHHHHHHc
Confidence 999999999987543 33443444 69999995 5577666666654400 011233445678889999999873
No 20
>PRK09604 UGMP family protein; Validated
Probab=96.90 E-value=0.011 Score=57.06 Aligned_cols=144 Identities=20% Similarity=0.205 Sum_probs=93.6
Q ss_pred CCCeEEEEc-CCc-eEEEEEecCCceEEecccc-cChhhHHHHHHhhcCCCCHHH--HHHHHhcCCCCCCceeec-cccC
Q psy11663 39 IFPYLLVNI-GSG-VSIMKVESDSKVERIGGTA-TGGGTFWGLGSLLTKAKGFDE--LLELAEKGDHRHADMLVR-DIYG 112 (297)
Q Consensus 39 ~~PyLlVNI-GSG-vSi~kV~~~~~~~RIgGS~-IGGGT~~GL~~LLt~~~~fde--il~lA~~Gd~~~vDllV~-DIYg 112 (297)
.+|++++-| | | +.++.+.+.++++.++.|. ..-|-++.-+...+|...+++ +..||..|+...+++... +.-+
T Consensus 126 ~~~~lvl~vsG-G~s~~~~~~~~~~~~~l~~t~d~slG~~yd~~t~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~~~~~ 204 (332)
T PRK09604 126 EFPFLALLVSG-GHTQLVLVKGIGDYELLGETLDDAAGEAFDKVAKLLGLGYPGGPAIDKLAKQGDPDAFKFPRPMDRPG 204 (332)
T ss_pred CCCEEEEEecC-CccEEEEEcCCCcEEEccccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHHhCCCCeEeCCccccCCC
Confidence 358765444 4 4 4456667778999998865 677788887777788664445 999999998654443210 1101
Q ss_pred CCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHH
Q psy11663 113 GDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTI 192 (297)
Q Consensus 113 ~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l 192 (297)
.+..-.|+. ++.. ++. + ..+.+++|+|+++...+.+.+..++..+.+.+++++|+++|.-..|.- +.+.+
T Consensus 205 ~~~sfsg~~---~~~~--~~~---~-~~~~~~~~iA~s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~-L~~~l 274 (332)
T PRK09604 205 LDFSFSGLK---TAVL--NTI---E-KSEQTKADIAASFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSG-LRERL 274 (332)
T ss_pred ccEecCcHH---HHHH--HHH---H-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHH-HHHHH
Confidence 111111111 1110 111 0 123457999999999999999999999999999999999999877644 44444
Q ss_pred H
Q psy11663 193 S 193 (297)
Q Consensus 193 ~ 193 (297)
.
T Consensus 275 ~ 275 (332)
T PRK09604 275 A 275 (332)
T ss_pred H
Confidence 3
No 21
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=96.70 E-value=0.027 Score=54.03 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=98.7
Q ss_pred CCCCeEE--EEcCCceEEEEEecCCceEEecccc-cChhhHHHHHHhhcCCCCHHH--HHHHHhcCCCCCCceeecccc-
Q psy11663 38 NIFPYLL--VNIGSGVSIMKVESDSKVERIGGTA-TGGGTFWGLGSLLTKAKGFDE--LLELAEKGDHRHADMLVRDIY- 111 (297)
Q Consensus 38 ~~~PyLl--VNIGSGvSi~kV~~~~~~~RIgGS~-IGGGT~~GL~~LLt~~~~fde--il~lA~~Gd~~~vDllV~DIY- 111 (297)
..+|+++ |+-|. +.++.+.++++++.++.|. ..-|-+.--+..++|...+++ +..||..|+....++.. +..
T Consensus 124 ~~~~~lvL~vdgg~-s~~~~~~~~~~~~~l~~t~d~SlG~~yd~vt~~LG~~~~~g~kvmgLA~~g~~~~~~~~~-~~~~ 201 (314)
T TIGR03723 124 LEFPFLALLVSGGH-TQLVLVKGVGDYELLGETLDDAAGEAFDKVARLLGLGYPGGPAIDKLAKEGDPKAFKFPR-PMTG 201 (314)
T ss_pred CCCCEEEEEEeCCC-cEEEEEecCCeEEEeeccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHhhCCCCEeECCh-hhcc
Confidence 3467754 55554 3355566678999998765 566777777777777654444 99999999865454321 111
Q ss_pred --CCCCCCCCCCccc--cccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchh
Q psy11663 112 --GGDYKCLGLPGDL--IASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPL 187 (297)
Q Consensus 112 --g~~~~~~gL~~d~--~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~ 187 (297)
+.+..-.|+.... ....|+ .++++..++|+|+++...+...+..++..+.+.+++++|+++|.-..|..
T Consensus 202 ~~~~~~sfsg~~~~~~~~~~~~~------~~~~~~~~~~iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~- 274 (314)
T TIGR03723 202 RPGLDFSFSGLKTAVLNLIEKLK------QKGEELDKADIAASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSR- 274 (314)
T ss_pred CCCCCEecccHHHHHHHHHHhcc------cCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHH-
Confidence 1111111221100 000111 00122457999999999999999999999999999999999999877654
Q ss_pred cHHHHHHHhhhhccCCceEEEec
Q psy11663 188 SMHTISFSIKYWSKGAVQSLFLR 210 (297)
Q Consensus 188 ~m~~l~~av~fws~g~~~a~Fl~ 210 (297)
+.+.+.... ....++.++++
T Consensus 275 l~~~l~~~~---~~~~~~v~~~~ 294 (314)
T TIGR03723 275 LRERLEELA---EKAGLEVFIPP 294 (314)
T ss_pred HHHHHHHHH---HHCCCEEECCC
Confidence 444443222 23355555543
No 22
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.68 E-value=0.012 Score=56.59 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=96.6
Q ss_pred eEEEEcCCceE-EEEEecCC---ceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCC
Q psy11663 42 YLLVNIGSGVS-IMKVESDS---KVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKC 117 (297)
Q Consensus 42 yLlVNIGSGvS-i~kV~~~~---~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~ 117 (297)
--|+.||.==| ++++++++ .|..=.-.+=|-|.|+--..-.++ -+.+|+-++|.+.+.+.+++
T Consensus 127 ~tIIDIGGQDsK~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lg-i~leel~~~a~~~~~~p~~I------------ 193 (293)
T TIGR03192 127 RTILDMGGQDCKAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLMQ-IPIADLGPRSFDVETEPEAV------------ 193 (293)
T ss_pred CEEEEeCCCceEEEEEcCCCcEeeeeecCcccccccHHHHHHHHHcC-CCHHHHHHHHHhcCCCCCCc------------
Confidence 35677765433 66664332 343333345677888877777777 48899988885543222222
Q ss_pred CCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhh
Q psy11663 118 LGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIK 197 (297)
Q Consensus 118 ~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~ 197 (297)
+...+=|.+-.-.....+.+++|||+++|...|+.++.. +..+.---+.|+|+|.. ..|+-..+.++.-+
T Consensus 194 -----ss~CtVFAeSevi~l~~~G~~~edI~aGl~~sia~rv~~---~~~~~~i~~~v~~~GGv-a~N~~l~~al~~~L- 263 (293)
T TIGR03192 194 -----SSICVVFAKSEALGLLKAGYTKNMVIAAYCQAMAERVVS---LLERIGVEEGFFITGGI-AKNPGVVKRIERIL- 263 (293)
T ss_pred -----CCcceEeccHhHHHHHHCCCCHHHHHHHHHHHHHHHHHH---HhcccCCCCCEEEECcc-cccHHHHHHHHHHh-
Confidence 111233544211112246789999999999999998743 34444333469999986 44676666666444
Q ss_pred hhccCCceEE-EeccCCchhhHHHHHhhcc
Q psy11663 198 YWSKGAVQSL-FLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 198 fws~g~~~a~-Fl~h~gY~GAlg~~l~~~~ 226 (297)
+.+.. .+.|++|.||+||.|...+
T Consensus 264 -----g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 264 -----GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred -----CCCceeCCCCccHHHHHHHHHHHHH
Confidence 22332 3678999999999997643
No 23
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=96.63 E-value=0.026 Score=53.77 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=88.8
Q ss_pred CCCeEEEEcCCceE-EEEEecCCceEEecccc-cChhhHHHHHHhhcCCCCHHH--HHHHHhcCCCCCCceeeccccCC-
Q psy11663 39 IFPYLLVNIGSGVS-IMKVESDSKVERIGGTA-TGGGTFWGLGSLLTKAKGFDE--LLELAEKGDHRHADMLVRDIYGG- 113 (297)
Q Consensus 39 ~~PyLlVNIGSGvS-i~kV~~~~~~~RIgGS~-IGGGT~~GL~~LLt~~~~fde--il~lA~~Gd~~~vDllV~DIYg~- 113 (297)
.+|++++-+=-|.+ ++.+++..++++++.|. ..-|=++--+..++|..-..| +.++|..|+....++...=...+
T Consensus 124 ~~~~l~l~vsGG~t~l~~~~~~~~~~~l~~t~d~S~GrlfD~va~lLGl~y~g~~~iE~lA~~~~~~~~~~~~~~~~~~~ 203 (305)
T TIGR00329 124 QFPFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAVGEAFDKVARLLGLGYPGGPKIEELAKKGDKLPFYFPLPYTVKPM 203 (305)
T ss_pred CCCcEEEEEcCCceEEEEEeCCCcEEEeeeecCchhhHHHHHHHHHcCCCCCChHHHHHHHhhCCCccccCCCccccCCC
Confidence 68898666633554 66677766999998865 444545544444455443334 67788888764333222000000
Q ss_pred -CCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHH
Q psy11663 114 -DYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTI 192 (297)
Q Consensus 114 -~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l 192 (297)
+..-.||...+.. -+ ..........+++|+|+++...+...+..++..+.+.+++++|+++|....|.- +.+.+
T Consensus 204 ~~~s~sgl~~~~~~-~~---~~~~~~~~~~~~~~iAasfq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~-L~~~l 278 (305)
T TIGR00329 204 LDFSFSGLKTAALR-KI---EKLKKNLNEATKEDIAYSFQETAFDHLIEKTKRALKDTGPKELVLVGGVSANKR-LREML 278 (305)
T ss_pred CcEEchHHHHHHHH-HH---HhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHH-HHHHH
Confidence 0111111111110 00 000000112457999999999999999999999999999999999999877654 44444
Q ss_pred H
Q psy11663 193 S 193 (297)
Q Consensus 193 ~ 193 (297)
.
T Consensus 279 ~ 279 (305)
T TIGR00329 279 E 279 (305)
T ss_pred H
Confidence 3
No 24
>PRK14878 UGMP family protein; Provisional
Probab=96.60 E-value=0.075 Score=51.13 Aligned_cols=163 Identities=16% Similarity=0.130 Sum_probs=100.3
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccc-cChhhHHHHHHhhcCCC---CHHHHHHHHhcCCCC-CCceeeccccCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTA-TGGGTFWGLGSLLTKAK---GFDELLELAEKGDHR-HADMLVRDIYGG 113 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~-IGGGT~~GL~~LLt~~~---~fdeil~lA~~Gd~~-~vDllV~DIYg~ 113 (297)
.+|.+|+--|.=+++++++ .++|+.+++|. .+-|=++--+..++|.. ... +-++|.+++.. +++..+.+
T Consensus 119 ~~~l~l~vsGg~t~i~~~~-~~~~~~~~~t~d~s~Gr~fD~vA~~LGl~~~G~~~-lE~~a~~~~~~~~~p~~~~~---- 192 (323)
T PRK14878 119 KDPVVLYVSGGNTQVLAFR-GGRYRVFGETLDIAIGNALDTFAREVGLAPPGGPA-IEKCAEKGEKYIELPYVVKG---- 192 (323)
T ss_pred CCCEEEEEEcCCeEEEEEe-CCeEEEeeeecCcchhHHHHHHHHHcCCCCCChhH-HHHHHhhCCCcCcCCccCcC----
Confidence 4677666667667788887 56799999873 66666655555555544 222 44567666431 22211110
Q ss_pred CCCCCCCCcccccccccccccc--CCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHH
Q psy11663 114 DYKCLGLPGDLIASSFGRVCKQ--DTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHT 191 (297)
Q Consensus 114 ~~~~~gL~~d~~ASsFGK~~~~--~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~ 191 (297)
. .-+|-.+... ..-.+..+++|+|+++...+.+.+..++..+++.+++++|+++|....| ..+.+.
T Consensus 193 ------~-----~~~fsgl~~~v~~~i~~~~~~~diAa~fq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N-~~L~~~ 260 (323)
T PRK14878 193 ------Q-----DLSFSGLLTAALRLYKGKERLEDVCYSLRETAFAMLVEVTERALAHTGKKEVLLVGGVAAN-RRLREK 260 (323)
T ss_pred ------C-----CCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHH-HHHHHH
Confidence 0 1222111000 0001224579999999999999999999999999999999999988775 445555
Q ss_pred HHHHhhhhccCCceEEEeccCCchhhHHHHHh
Q psy11663 192 ISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLR 223 (297)
Q Consensus 192 l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~ 223 (297)
+.... .+..++.++++ ..|++--|+.+.
T Consensus 261 l~~~~---~~~g~~v~~~~-~~~~~D~GimIA 288 (323)
T PRK14878 261 LEIMA---EDRGAKFYVVP-PEYAGDNGAMIA 288 (323)
T ss_pred HHHHH---HHCCCEEECCC-CCCCchHHHHHH
Confidence 54322 12356665544 677887777763
No 25
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.43 E-value=0.31 Score=48.24 Aligned_cols=166 Identities=14% Similarity=0.116 Sum_probs=97.7
Q ss_pred CeEEEEcCCceEEEEEecC-----------------CceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCC
Q psy11663 41 PYLLVNIGSGVSIMKVESD-----------------SKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHA 103 (297)
Q Consensus 41 PyLlVNIGSGvSi~kV~~~-----------------~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~v 103 (297)
--+++++||+..+..+... +.|.-.+++.-||..+-=+.+.+ +..+++++.+++.+-....-
T Consensus 250 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (481)
T TIGR01312 250 GDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELF-GKEDVEALNELAEQSPPGAE 328 (481)
T ss_pred CcEEEEecCceEEEEecCCcccCcccceeeeeeecCCceEEEeEehhhHHHHHHHHHHh-CCCcHHHHHHHHhcCCCCCC
Confidence 4578889987555444321 12222233333443333344434 43578888888876443332
Q ss_pred cee-eccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEecc
Q psy11663 104 DML-VRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMM--HKLKKVYFGGY 180 (297)
Q Consensus 104 Dll-V~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~--~~ik~Ivf~G~ 180 (297)
.++ .-...|...+. -.++.-++-+| +. ...++++++|+++.-|++++-++.-..-+. ..+++|+.+|.
T Consensus 329 ~~~~~p~~~G~r~P~--~~~~~~g~~~g-l~------~~~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG 399 (481)
T TIGR01312 329 GVTFLPYLNGERTPH--LDPQARGSFIG-LT------HNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGG 399 (481)
T ss_pred CeEEecccccCCCCC--CCCCcceEEEC-CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecc
Confidence 333 33333333221 22333344333 22 456799999999999999998877655543 34689999998
Q ss_pred ccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 181 FLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 181 fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
. ..++..|+.++... . .....++ ..-.+|+||.+..
T Consensus 400 ~-s~s~~~~Q~~Adv~----g--~pv~~~~-~~e~~a~GaA~~a 435 (481)
T TIGR01312 400 G-AKSPAWRQMLADIF----G--TPVDVPE-GEEGPALGAAILA 435 (481)
T ss_pred c-cCCHHHHHHHHHHh----C--CceeecC-CCcchHHHHHHHH
Confidence 7 45677888888665 2 2233334 3348899999865
No 26
>PRK13317 pantothenate kinase; Provisional
Probab=96.34 E-value=0.002 Score=61.11 Aligned_cols=42 Identities=33% Similarity=0.534 Sum_probs=36.4
Q ss_pred cccchhHHHHHHHhhhcccccceeeeeccccchhhhhhhhccccc
Q psy11663 233 SYHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAEC 277 (297)
Q Consensus 233 s~~~~~~~~ls~a~~~ws~g~~~a~fl~hegy~ga~ga~~~~~~~ 277 (297)
+.||..++.++ ++|+.+..+++|++|++|.||+||+|...+.
T Consensus 234 a~n~~l~~~l~---~~l~~~~~~~~~p~~~~~~gAlGAaL~a~~~ 275 (277)
T PRK13317 234 TNNPLLQEIIE---SYTKLRNCTPIFLENGGYSGAIGALLLATNK 275 (277)
T ss_pred ccCHHHHHHHH---HHHhcCCceEEecCCCchhHHHHHHHHhhhc
Confidence 56888888887 5899999999999999999999999986543
No 27
>PRK03011 butyrate kinase; Provisional
Probab=96.13 E-value=0.046 Score=53.71 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCL 118 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~ 118 (297)
.-.++++.+|+|+|.-.+.+...+.=-.|.. |.|-+++. -.|.-++..+..+...|..+..++ .+.+.+ ..
T Consensus 175 ~~n~I~~hLGtGig~gai~~Gk~idgs~g~a-gEG~~~~~---R~G~l~~~~~~~~~~~g~~s~~~l-~~~l~~----~~ 245 (358)
T PRK03011 175 ELNLIVAHLGGGISVGAHRKGRVIDVNNALD-GEGPFSPE---RAGGLPVGDLVELCFSGKYTKEEL-KKKLVG----KG 245 (358)
T ss_pred cCcEEEEEeCCCceeeEEECCEEEecCCccC-CCCCcccC---cccCcCcHHHHHHHhcCCCCHHHH-HHHHHh----cc
Confidence 4479999999999999887764444344444 65666542 234445555566665554322111 111221 11
Q ss_pred CCCccccccccccccccCCccCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHc-CCcEEEEeccccccchhcHHHHHHH
Q psy11663 119 GLPGDLIASSFGRVCKQDTMEGQC-SEADLARSLLFAISNDIGQ-IASLYAMMH-KLKKVYFGGYFLRNHPLSMHTISFS 195 (297)
Q Consensus 119 gL~~d~~ASsFGK~~~~~~~~~~~-s~eDia~SLl~Mv~~nIgq-lA~l~A~~~-~ik~Ivf~G~fi~~~~~~m~~l~~a 195 (297)
||.+-.-.+.+-.+. +.+ ..+..|+.++.++++.|+. ++.+.+... +++.|||+|..-. .+...+.+...
T Consensus 246 Gl~~~~gs~d~reV~------~~a~~GD~~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~-~~~l~~~I~~~ 318 (358)
T PRK03011 246 GLVAYLGTNDAREVE------KRIEEGDEKAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAY-SKRLVERIKER 318 (358)
T ss_pred CcccccCCCCHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCcccc-CHHHHHHHHHH
Confidence 222111001111111 011 1245788999999999996 455555553 7999999998765 67677777777
Q ss_pred hhhhccCCceEEEeccCCchhhHHHHH
Q psy11663 196 IKYWSKGAVQSLFLRHEGYLGAIGAFL 222 (297)
Q Consensus 196 v~fws~g~~~a~Fl~h~gY~GAlg~~l 222 (297)
+++. +.+..+==+.|.=.+|+||+-
T Consensus 319 l~~~--~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 319 VSFI--APVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred HHhh--CCeEEEeCCCHHHHHHHHHHH
Confidence 7654 334443333444678888763
No 28
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=95.99 E-value=0.15 Score=48.92 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccc-cChhhHHHHHHhhcCCCC---HHHHHHHHhcCCCC-CCceeeccccCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTA-TGGGTFWGLGSLLTKAKG---FDELLELAEKGDHR-HADMLVRDIYGG 113 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~-IGGGT~~GL~~LLt~~~~---fdeil~lA~~Gd~~-~vDllV~DIYg~ 113 (297)
.+|.+|+--|.=+++.+++ .++++.++.|. .+-|-++--+..++|... . ++-++|.+|+.. +++.-+.+
T Consensus 120 ~~~lvL~vsGg~t~l~~~~-~~~~~~l~~t~d~s~GrlfDava~~LGl~~~G~~-~le~la~~~~~~~~~~~~~~~---- 193 (322)
T TIGR03722 120 KDPVVLYVSGGNTQVIAYR-NGRYRVFGETLDIGLGNALDKFAREVGLGHPGGP-KIEELAEKGKEYIELPYTVKG---- 193 (322)
T ss_pred CCCeEEEEeCCceEEEEEe-CCeEEEEEEeccccchHHHHHHHHHhCCCCCChH-HHHHHHhcCCCcccCCccCCC----
Confidence 4677666667667788888 46799998873 455555554444455432 2 455577777432 11111100
Q ss_pred CCCCCCCCccccccccc----cccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcH
Q psy11663 114 DYKCLGLPGDLIASSFG----RVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSM 189 (297)
Q Consensus 114 ~~~~~gL~~d~~ASsFG----K~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m 189 (297)
.+ -+|- .+.. .-....+++|+|+++...+.+.+..++..+++.+++++|+++|....|. .+.
T Consensus 194 --------~~---~~fs~l~~~~~~--~~~~~~~~~diAasfq~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~-~L~ 259 (322)
T TIGR03722 194 --------MD---LSFSGLLTAALR--AYKKGARLEDVCYSLQETAFAMLVEVTERALAHTGKKEVLLVGGVAANR-RLR 259 (322)
T ss_pred --------Cc---CchHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHH-HHH
Confidence 00 0121 1110 0011245799999999999999999999999999999999999887754 444
Q ss_pred HHHHHHhhhhccCCceEEEeccCCchhhHHHHH
Q psy11663 190 HTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222 (297)
Q Consensus 190 ~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l 222 (297)
+.+.... ....++. |+-..-+++--|+.+
T Consensus 260 ~~l~~~l---~~~g~~v-~~~~~~p~~D~Gi~I 288 (322)
T TIGR03722 260 EMLELMA---EDRGAKF-YVPPPEYAGDNGAMI 288 (322)
T ss_pred HHHHHHH---HHCCCEE-EcCCCCCCchHHHHH
Confidence 4444322 2234544 444455566555554
No 29
>PRK15027 xylulokinase; Provisional
Probab=95.94 E-value=0.73 Score=46.24 Aligned_cols=129 Identities=16% Similarity=0.045 Sum_probs=80.7
Q ss_pred HhhcCCCCHHHHHHHHhcCCCCCCc-eeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHH
Q psy11663 80 SLLTKAKGFDELLELAEKGDHRHAD-MLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISND 158 (297)
Q Consensus 80 ~LLt~~~~fdeil~lA~~Gd~~~vD-llV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~n 158 (297)
+-..+.++++++.++|++-....-. +.+-.+.|...+ .-.+++-++-||-- ...+++|++|+++.-|+++
T Consensus 302 ~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P--~~~~~arg~f~gl~-------~~~~~~~l~rAvlEgia~~ 372 (484)
T PRK15027 302 AKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTP--HNNPQAKGVFFGLT-------HQHGPNELARAVLEGVGYA 372 (484)
T ss_pred HHHhCCccHHHHHHHHhhCCCCCCceEEecccccCCCc--CCCCCcceEEECCC-------CCCCHHHHHHHHHHHHHHH
Confidence 3334555688888887653322222 334445444333 13455666666521 3468999999999999999
Q ss_pred HHHHHHHHHH-HcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 159 IGQIASLYAM-MHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 159 IgqlA~l~A~-~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
+-+.--..-+ ...+++|+.+|.- ..++..|+.++.+. . .....++...-.+|+||.+..
T Consensus 373 ~~~~~~~l~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~----g--~pv~~~~~~~~~~a~GaA~lA 432 (484)
T PRK15027 373 LADGMDVVHACGIKPQSVTLIGGG-ARSEYWRQMLADIS----G--QQLDYRTGGDVGPALGAARLA 432 (484)
T ss_pred HHHHHHHHHHcCCCccEEEEeCcc-cCCHHHHHHHHHHh----C--CeEEeecCCCcchHHHHHHHH
Confidence 8876654432 2236799999995 56787888888665 2 233234444446899998764
No 30
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=95.60 E-value=1.3 Score=38.15 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhH
Q psy11663 141 QCSEADLARSLLFAISNDIGQIASLYAMM--HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAI 218 (297)
Q Consensus 141 ~~s~eDia~SLl~Mv~~nIgqlA~l~A~~--~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAl 218 (297)
+.+++|++++++.-++..+-+.--...+. ..+++|+.+|... .++..|+.++..+. .++..-.....+|+
T Consensus 117 ~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~-~n~~~~q~~Advl~-------~~V~~~~~~e~~a~ 188 (198)
T PF02782_consen 117 DTTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGA-KNPLWMQILADVLG-------RPVVRPEVEEASAL 188 (198)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGG-GSHHHHHHHHHHHT-------SEEEEESSSTHHHH
T ss_pred ccCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccc-cChHHHHHHHHHhC-------CceEeCCCCchHHH
Confidence 44599999999999999999888777655 7899999999996 57889999987762 33343444889999
Q ss_pred HHHHhh
Q psy11663 219 GAFLRG 224 (297)
Q Consensus 219 g~~l~~ 224 (297)
||.+..
T Consensus 189 GaA~~A 194 (198)
T PF02782_consen 189 GAALLA 194 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 31
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.20 E-value=0.079 Score=52.81 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=96.4
Q ss_pred EEEEcCCc-eEEEEEecC--CceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCC
Q psy11663 43 LLVNIGSG-VSIMKVESD--SKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLG 119 (297)
Q Consensus 43 LlVNIGSG-vSi~kV~~~--~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~g 119 (297)
-++-||-= +=.+++++. +.|.-=+=.+=|-|-|+=-..--+| -+.+|+-++|.+++.. +++--.
T Consensus 232 tIiDIGGQD~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~Lg-v~v~E~~~~A~~~~~~-v~i~S~----------- 298 (396)
T COG1924 232 TVIDIGGQDSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRLG-VDVEELGKLALKATPP-VKINSR----------- 298 (396)
T ss_pred EEEEecCcceeEEEEeCCeeeeeEeccccccccchHHHHHHHHhC-CCHHHHHHHHhcCCCC-cccCCe-----------
Confidence 44555532 223444431 2443333344555666555444444 6899999999998864 433211
Q ss_pred CCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcE-EEEeccccccchhcHHHHHHHhhh
Q psy11663 120 LPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKK-VYFGGYFLRNHPLSMHTISFSIKY 198 (297)
Q Consensus 120 L~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~-Ivf~G~fi~~~~~~m~~l~~av~f 198 (297)
..=|+.-.-.....+-.++|||++++...|..|+.. -..+.-+++. |||.|..-. |.-..+.++.-
T Consensus 299 ------CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv~~~v~~---~~~~~~~i~~~iv~~GGva~-n~av~~ale~~--- 365 (396)
T COG1924 299 ------CAVFAESEVISALAEGASPEDILAGLAYSVAENVAE---KVIKRVDIEEPIVLQGGVAL-NKAVVRALEDL--- 365 (396)
T ss_pred ------eEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH---HHhhccCCCCCEEEECcchh-hHHHHHHHHHH---
Confidence 112332110012246789999999999999998754 2456677777 999998744 45444455432
Q ss_pred hccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 199 WSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 199 ws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
-+.+.+-|.|+++.||+||.|-..+
T Consensus 366 ---lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 366 ---LGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred ---hCCeeecCCccchhhHHHHHHHHhh
Confidence 3578889999999999999997644
No 32
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.08 E-value=1.7 Score=44.30 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=76.3
Q ss_pred CHHHHHHHHhcCCCCCCcee-eccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11663 87 GFDELLELAEKGDHRHADML-VRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASL 165 (297)
Q Consensus 87 ~fdeil~lA~~Gd~~~vDll-V~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l 165 (297)
.|+++.+++++-....-+++ +-...|...+ ..++++-++-+| +. ...+++|++|+++.-|+++.-++--.
T Consensus 358 ~~~~l~~~a~~~p~g~~gllflP~l~Ger~P--~~d~~arG~~~G-l~------~~~~~~~~~RAvlEgia~~~~~~l~~ 428 (536)
T TIGR01234 358 LHEALSEAAAKQPSGEHGLVALDWFNGNRSP--LVDQRLKGVITG-LT------LATDAPLLYRALIEATAFGTRMIMET 428 (536)
T ss_pred HHHHHHHHHHhCCCCCCCeEecchhccCCCC--CCCCcceEEEEC-CC------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888765443332333 3333443222 133455445555 21 34579999999999999888777444
Q ss_pred HHH-HcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 166 YAM-MHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 166 ~A~-~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
.-+ ...+++|+.+|.....++..|+.++-.. ++...-++..+ .+|+||.+..
T Consensus 429 l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~------g~pV~~~~~~e-~~a~GaA~lA 481 (536)
T TIGR01234 429 FTDSGVPVEELMAAGGIARKNPVIMQIYADVT------NRPLQIVASDQ-APALGAAIFA 481 (536)
T ss_pred HHhcCCCcceEEEeCCccccCHHHHHHHHHhh------CCeeEeccCCc-chhHHHHHHH
Confidence 332 2346899999998666788888887655 33444455544 7799998864
No 33
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=94.93 E-value=0.22 Score=50.62 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccc-cChhhHHHHHHhhcCCCCHH--HHHHHHhcCCCCCCceeeccccCCCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTA-TGGGTFWGLGSLLTKAKGFD--ELLELAEKGDHRHADMLVRDIYGGDY 115 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~-IGGGT~~GL~~LLt~~~~fd--eil~lA~~Gd~~~vDllV~DIYg~~~ 115 (297)
.+|..|+--|..++++.+++ +.|+.++.|. ..-|-++--+..++|..... .+..+|..|+.. .++- +
T Consensus 123 ~~~l~l~vsGg~t~~~~~~~-~~~~~l~~t~d~S~G~~fD~va~~Lg~~~~g~~~le~lA~~~~~~-~~~~--------~ 192 (535)
T PRK09605 123 EDPVTLYVSGGNTQVLAYLN-GRYRVFGETLDIGVGNALDKFARHVGLPHPGGPKIEKLAKDGKKY-IDLP--------Y 192 (535)
T ss_pred CCCeEEEEecCCeEEEEEcC-CeEEEEEeecchhhhHHHHHHHHHhCCCCCCCHHHHHHHhcCCCc-ccCC--------C
Confidence 46877777787888999888 7899998865 45555555555555544332 366678777531 1111 0
Q ss_pred CCCCCCcccccccccccccc-CC-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHH
Q psy11663 116 KCLGLPGDLIASSFGRVCKQ-DT-MEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTIS 193 (297)
Q Consensus 116 ~~~gL~~d~~ASsFGK~~~~-~~-~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~ 193 (297)
+ +...- -+|-.+... .+ -.+..+.+|+|++...++.+.+..++-.+.+.+|+++|+++|....|. .+.+.+.
T Consensus 193 ~---~~~~~--~~~~~l~~~~~~~~~~~~~~~~iA~~~q~~l~~~l~~~~~~~~~~~g~~~lvlsGGVa~N~-~l~~~l~ 266 (535)
T PRK09605 193 V---VKGMD--FSFSGLLTAAKRAYDAGEPLEDVCYSLQETAFAMLTEVTERALAHTGKDEVLLVGGVAANN-RLREMLK 266 (535)
T ss_pred c---CCCCC--EeehHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHH-HHHHHHH
Confidence 0 00000 022111100 00 011125689999999999999999999999999999999999987754 4444444
Q ss_pred HHhhhhccCCceEEEec
Q psy11663 194 FSIKYWSKGAVQSLFLR 210 (297)
Q Consensus 194 ~av~fws~g~~~a~Fl~ 210 (297)
...+ ...++.+|+.
T Consensus 267 ~~~~---~~~~~v~~~~ 280 (535)
T PRK09605 267 EMCE---ERGADFYVPE 280 (535)
T ss_pred HHHH---HCCCEEECCC
Confidence 2211 2345555543
No 34
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.76 E-value=2.3 Score=42.95 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHhcCCCCCCceee-ccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11663 85 AKGFDELLELAEKGDHRHADMLV-RDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIA 163 (297)
Q Consensus 85 ~~~fdeil~lA~~Gd~~~vDllV-~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA 163 (297)
..+++++.++|++-....-.+++ --+-|...+ .-.+++-++-|| +. ..-+++|++++++.=|++.+-+.-
T Consensus 321 ~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P--~~~~~~rg~f~G-l~------~~~~~~~l~rAvlEgia~~~~~~~ 391 (505)
T TIGR01314 321 IDPYDVLTEIAARVSPGADGLLFHPYLAGERAP--LWNANARGSFFG-LT------YSHKKEHMIRAALEGVIYNLYTVA 391 (505)
T ss_pred CCHHHHHHHHHhhCCCCCCceEEecccccCCCC--CCCCCccEEEEC-CC------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888654433323443 223233222 123344444455 22 234799999999999999987765
Q ss_pred HHHHHH--cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 164 SLYAMM--HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 164 ~l~A~~--~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
-...+. ..+++|+.+|.- ..++..++.++... +......+..+ .+|+||.+..
T Consensus 392 ~~~~~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~------g~pv~~~~~~e-~~a~GaA~la 446 (505)
T TIGR01314 392 LALVEVMGDPLNMIQATGGF-ASSEVWRQMMSDIF------EQEIVVPESYE-SSCLGACILG 446 (505)
T ss_pred HHHHHhcCCCCcEEEEecCc-ccCHHHHHHHHHHc------CCeeEecCCCC-cchHHHHHHH
Confidence 444432 347899999986 45688888887655 23333344444 7899998764
No 35
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.76 E-value=1.3 Score=44.77 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=85.6
Q ss_pred ccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcee-eccccCCCCCCCCCCccccccccccccccCCccCCCCHH
Q psy11663 67 GTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADML-VRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEA 145 (297)
Q Consensus 67 GS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDll-V~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~e 145 (297)
++..||..+-=+.+.+.-..+++++.++|++-. ..-+++ +-...|...+ ...+++-++=+|-- ...+++
T Consensus 309 ~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~gl~~~P~l~G~r~P--~~~~~arg~~~Gl~-------~~~~~~ 378 (504)
T PTZ00294 309 SIAVAGAGVEWLRDNMGLISHPSEIEKLARSVK-DTGGVVFVPAFSGLFAP--YWRPDARGTIVGMT-------LKTTRA 378 (504)
T ss_pred hhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCC-CCCCEEEeCcccCCCCC--CCCCCCCEEEEccC-------CCCCHH
Confidence 344455555444444432346888888887643 222333 3333333222 12345545555522 245899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--CcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHh
Q psy11663 146 DLARSLLFAISNDIGQIASLYAMMHK--LKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLR 223 (297)
Q Consensus 146 Dia~SLl~Mv~~nIgqlA~l~A~~~~--ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~ 223 (297)
|++|+++.-|++.+-+.--...+..| +++|+.+|..- .++..++.++..+ +.....++.++ .+|+||.+.
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a-~s~~w~Qi~Adv~------g~pV~~~~~~e-~~alGaAl~ 450 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLT-KNKLLMQFQADIL------GKDIVVPEMAE-TTALGAALL 450 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccc-cCHHHHHHHHHHh------CCceEecCccc-chHHHHHHH
Confidence 99999999999998776655544323 78999999875 4677888887655 23334445444 789999986
Q ss_pred hc
Q psy11663 224 GA 225 (297)
Q Consensus 224 ~~ 225 (297)
..
T Consensus 451 aa 452 (504)
T PTZ00294 451 AG 452 (504)
T ss_pred HH
Confidence 53
No 36
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.84 Score=45.05 Aligned_cols=169 Identities=18% Similarity=0.154 Sum_probs=101.5
Q ss_pred CCCeE-EEEcCCceEEEEEecCCceEEecccc-cChh-hHHHHHHhhc-CCCCHHHHHHHHhcCCCCCCceeeccccCCC
Q psy11663 39 IFPYL-LVNIGSGVSIMKVESDSKVERIGGTA-TGGG-TFWGLGSLLT-KAKGFDELLELAEKGDHRHADMLVRDIYGGD 114 (297)
Q Consensus 39 ~~PyL-lVNIGSGvSi~kV~~~~~~~RIgGS~-IGGG-T~~GL~~LLt-~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~ 114 (297)
.||++ |+--|-=|.++.|.+.++|+.+|-|. +.-| .|=-.+|+|- +..-=-+|-++|++||..++.+-
T Consensus 125 ~~p~v~LlVSGGHTqli~~~~~g~y~ilGeTlDdA~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G~~~~~~fP-------- 196 (342)
T COG0533 125 AFPPVALLVSGGHTQLIAVRGIGRYEVLGETLDDAAGEAFDKVARLLGLGYPGGPAIEKLAKKGDPDAFEFP-------- 196 (342)
T ss_pred CCCcEEEEEecCceEEEEEcCCCcEEEEeeechhhhhHHHHHHHHHhCCCCCCcHHHHHHHhcCCCCceeCC--------
Confidence 67774 34446669999999988999999886 3322 3333444442 22222288999999997654432
Q ss_pred CCCCCCCcccccccccccccc-------CCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccc
Q psy11663 115 YKCLGLPGDLIASSFGRVCKQ-------DTMEG---QCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRN 184 (297)
Q Consensus 115 ~~~~gL~~d~~ASsFGK~~~~-------~~~~~---~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~ 184 (297)
++ ..+++-..-||-=+.+. .+.++ ...++|||+|+-..+...+....-.+.+.++.++++.+|..=.|
T Consensus 197 ~~--~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGVaaN 274 (342)
T COG0533 197 RP--MVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAAN 274 (342)
T ss_pred cc--ccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccHHHh
Confidence 11 11121122333222110 01112 23466699999999999999999999999999999999987554
Q ss_pred chhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHH
Q psy11663 185 HPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222 (297)
Q Consensus 185 ~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l 222 (297)
..+.+.++.... ...++.+|+ ...|++==||++
T Consensus 275 -~~LR~~l~~~~~---~~g~~~~~p-~~~lCtDNaaMI 307 (342)
T COG0533 275 -SRLREMLEEMCK---ERGAEVYIP-PLELCTDNAAMI 307 (342)
T ss_pred -HHHHHHHHHHHH---hcCCEEEcC-ChHhccchHHHH
Confidence 434444432221 223455443 455665444444
No 37
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=94.64 E-value=3.1 Score=41.88 Aligned_cols=139 Identities=19% Similarity=0.125 Sum_probs=84.1
Q ss_pred cccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-eeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHH
Q psy11663 68 TATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHAD-MLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEAD 146 (297)
Q Consensus 68 S~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vD-llV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eD 146 (297)
...||+.+-=+-..+....+++++.++|++=. ..-. +.+-.+.|...+ .-.+++-++-+| +. ...+++|
T Consensus 303 ~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~g~~~~P~l~G~r~P--~~~~~arg~~~G-l~------~~~~~~~ 372 (493)
T TIGR01311 303 VFVAGAAVQWLRDNLKLIKHAAESEALARSVE-DNGGVYFVPAFTGLGAP--YWDPDARGAIFG-LT------RGTTKAH 372 (493)
T ss_pred hhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCC-CCCCEEEeCcccCCCCC--cCCCCCcEEEEC-cC------CCCCHHH
Confidence 44444444333333433346778877776422 1112 334445553322 123344445554 32 3458999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 147 LARSLLFAISNDIGQIASLYAMM--HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 147 ia~SLl~Mv~~nIgqlA~l~A~~--~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
++++++.-|++++-+..-..-+. ..+++|..+|.. ..++..++.++... . .....+++. -.+|+||.+..
T Consensus 373 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv~----g--~pv~~~~~~-e~~alGaA~~a 444 (493)
T TIGR01311 373 IARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGM-TNNNLLMQFQADIL----G--VPVVRPKVT-ETTALGAAYAA 444 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeccc-ccCHHHHHHHHHhc----C--CeeEecCCC-cchHHHHHHHH
Confidence 99999999999998887766543 347899999987 45788888888655 2 223334544 47899999865
No 38
>PRK00047 glpK glycerol kinase; Provisional
Probab=94.62 E-value=3.2 Score=41.82 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=83.5
Q ss_pred cccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCce-eeccccCCCCCCCCCCccccccccccccccCCccCCCCH
Q psy11663 66 GGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADM-LVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSE 144 (297)
Q Consensus 66 gGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDl-lV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~ 144 (297)
+++..+|..+-=+...+....+.+++.++|++-.-.+ .+ .+-...|...+ ...+++-++-+| +. ...++
T Consensus 305 g~~~~~g~~l~W~~~~~~~~~~~~~~~~~a~~~~~~~-gl~~lP~l~G~r~P--~~d~~arg~~~G-l~------~~~~~ 374 (498)
T PRK00047 305 GSIFVAGSAIQWLRDGLKIISDASDSEALARKVEDND-GVYVVPAFTGLGAP--YWDSDARGAIFG-LT------RGTTK 374 (498)
T ss_pred eeHhhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCC-CEEEeCccccCCCC--CCCCCCcEEEEC-CC------CCCCH
Confidence 4444444444333333422234667777775433111 23 34444443322 123344444444 22 34578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHH
Q psy11663 145 ADLARSLLFAISNDIGQIASLYAMM--HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222 (297)
Q Consensus 145 eDia~SLl~Mv~~nIgqlA~l~A~~--~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l 222 (297)
+|++|+++.=|++++-+.--...+. ..+++|+.+|.- ..++..++.++-.. +....-++..+ .+|+||.+
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvl------g~pV~~~~~~e-~~a~GaA~ 446 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGA-VANNFLMQFQADIL------GVPVERPVVAE-TTALGAAY 446 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCc-ccCHHHHHHHHHhh------CCeeEecCccc-chHHHHHH
Confidence 9999999999999998876655543 347899999986 56788888888666 23333445444 78999998
Q ss_pred hh
Q psy11663 223 RG 224 (297)
Q Consensus 223 ~~ 224 (297)
..
T Consensus 447 ~A 448 (498)
T PRK00047 447 LA 448 (498)
T ss_pred HH
Confidence 65
No 39
>PRK04123 ribulokinase; Provisional
Probab=94.25 E-value=3.1 Score=42.44 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=76.5
Q ss_pred CCHHHHHHHHhcCCCCCCce-eeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11663 86 KGFDELLELAEKGDHRHADM-LVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIAS 164 (297)
Q Consensus 86 ~~fdeil~lA~~Gd~~~vDl-lV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~ 164 (297)
..++++.++|++-....-.+ .+-...|...+. ..+++-++-+| +. ...+++|++|+++.-|+..+-+..-
T Consensus 360 ~~~~~l~~~a~~~~~g~~gl~f~P~l~Ger~P~--~~~~arg~~~G-l~------~~~~~~~l~RAvlEgia~~~~~~~e 430 (548)
T PRK04123 360 QLLELLTEAAAKQPPGEHGLVALDWFNGRRTPL--ADQRLKGVITG-LT------LGTDAPDIYRALIEATAFGTRAIME 430 (548)
T ss_pred cHHHHHHHHHHhcCCCCCceEEcccccCCCCCC--CCCCCceEEEC-CC------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888887654333233 333344433221 23444444444 22 3457999999999999999877755
Q ss_pred HHHH-HcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 165 LYAM-MHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 165 l~A~-~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
...+ ...+++|+.+|.....++..++.++-.. ...+ .-++..+ .+|+||.+..
T Consensus 431 ~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~----g~pV--~~~~~~e-~~alGaA~lA 484 (548)
T PRK04123 431 CFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL----NRPI--QVVASDQ-CPALGAAIFA 484 (548)
T ss_pred HHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc----CCce--EecCccc-cchHHHHHHH
Confidence 5543 2236799999998556788888888665 2222 2334333 7789988764
No 40
>PLN02295 glycerol kinase
Probab=93.83 E-value=4.4 Score=41.13 Aligned_cols=145 Identities=17% Similarity=0.085 Sum_probs=86.1
Q ss_pred eEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-eeeccccCCCCCCCCCCccccccccccccccCCccC
Q psy11663 62 VERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHAD-MLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEG 140 (297)
Q Consensus 62 ~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vD-llV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~ 140 (297)
|.-.|++..+|..+-=+.+.+....+++++.++|++=+ ..-. +.+-...|...+. -.+++-++-+| +. .
T Consensus 305 ~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~gl~f~P~l~G~r~P~--~~~~arg~~~G-l~------~ 374 (512)
T PLN02295 305 YALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVD-DTGGVYFVPAFSGLFAPR--WRDDARGVCVG-IT------R 374 (512)
T ss_pred EEEechhhhhHHHHHHHHHHcCCCCCHHHHHHHHHhCC-CCCceEEeCcccCCCCCc--CCCCCCEEEEC-CC------C
Confidence 33344555555555444444532245777878775422 1112 3344444432221 33555555565 22 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCC
Q psy11663 141 QCSEADLARSLLFAISNDIGQIASLYAMM-------HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEG 213 (297)
Q Consensus 141 ~~s~eDia~SLl~Mv~~nIgqlA~l~A~~-------~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~g 213 (297)
..+++|++|+++.-|++.+-++--..-+. ..+++|..+|.- ..++..++.++... . ....-+++.+
T Consensus 375 ~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGg-a~s~~w~Qi~ADv~----g--~pV~~~~~~e 447 (512)
T PLN02295 375 FTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGA-TANNLLMQIQADLL----G--SPVVRPADIE 447 (512)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccc-hhCHHHHHHHHHhc----C--CceEecCccc
Confidence 45899999999999999986655544332 147889888886 56788888888655 2 3333344443
Q ss_pred chhhHHHHHhh
Q psy11663 214 YLGAIGAFLRG 224 (297)
Q Consensus 214 Y~GAlg~~l~~ 224 (297)
.+|+||.+..
T Consensus 448 -~~alGaA~~A 457 (512)
T PLN02295 448 -TTALGAAYAA 457 (512)
T ss_pred -cHHHHHHHHH
Confidence 7899998754
No 41
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=93.31 E-value=0.063 Score=49.39 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=90.8
Q ss_pred CCeEEEEcCCceEEEEEecCCceEEecccc--c-ChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCC
Q psy11663 40 FPYLLVNIGSGVSIMKVESDSKVERIGGTA--T-GGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYK 116 (297)
Q Consensus 40 ~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~--I-GGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~ 116 (297)
.|-+++-.|||...+..+.+++..|+||-+ + +.|.+..+.+... +..++... +.....+ | .
T Consensus 106 ~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg~~ig~~~L-----~~~~~~~d-~~~~~~~------~----~ 169 (271)
T PF01869_consen 106 EDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSGYWIGRRAL-----RAVLRELD-GRAEPTP------Y----A 169 (271)
T ss_dssp SSEEEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSHHHHHHHHH-----HHHHHHHT-TSSTTSH------H----H
T ss_pred CcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcHHHHHHHHH-----hHHHHHhc-CccccCc------c----c
Confidence 589999999999999999788999999854 1 1233333333221 12222111 1111111 2 1
Q ss_pred CCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcE--EEEeccccccchhcHHHHHH
Q psy11663 117 CLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKK--VYFGGYFLRNHPLSMHTISF 194 (297)
Q Consensus 117 ~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~--Ivf~G~fi~~~~~~m~~l~~ 194 (297)
. -.....-+.|.+.... ...+....|..++.-.++.+........+..+... |+++|..+.+.+. .+.+..
T Consensus 170 ~--~~~~~~~A~fa~~v~~----~a~~gd~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~-~~~l~~ 242 (271)
T PF01869_consen 170 K--PASNARIAVFAPTVFE----AAQQGDEVARDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPL-VKALRD 242 (271)
T ss_dssp H--TT-HHHHHCTHHHHHH----HHHTTTHHHHHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHH-HHHHGG
T ss_pred C--CCChhheehhhHHHHH----HHHcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHH-HHHHHH
Confidence 1 1111122455554321 11134556777777777778877777777777765 9999999887553 333322
Q ss_pred HhhhhccCCceEEEeccCCchhhHHHHHh
Q psy11663 195 SIKYWSKGAVQSLFLRHEGYLGAIGAFLR 223 (297)
Q Consensus 195 av~fws~g~~~a~Fl~h~gY~GAlg~~l~ 223 (297)
.+.-- -.+....-++++.|.+|+||.|.
T Consensus 243 ~l~~~-~~~~~~~~~~~~~~~~a~GAall 270 (271)
T PF01869_consen 243 ALKEK-LPKVPIIIPVEPQYDPAYGAALL 270 (271)
T ss_dssp GS-HH-HHCCTCECECCGSSHHHHHHHHH
T ss_pred HHHHh-cCCCceEECCCCCccHHHHHHHh
Confidence 22100 01223345678999999999874
No 42
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=92.73 E-value=4.6 Score=37.74 Aligned_cols=128 Identities=15% Similarity=0.163 Sum_probs=73.2
Q ss_pred eEEEEcCCceEEEEEecCCceEEecccccChhhHHHH-HHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCC
Q psy11663 42 YLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGL-GSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGL 120 (297)
Q Consensus 42 yLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL-~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL 120 (297)
-++|.||.|++=+-+-.+++..+.....+||.-|-=- ++.| + .+++|.-++-.+.
T Consensus 137 ~~vvDIGggtt~i~v~~~g~~~~~~~~~~GG~~it~~Ia~~l-~-i~~~eAE~lK~~~---------------------- 192 (267)
T PRK15080 137 GAVVDIGGGTTGISILKDGKVVYSADEPTGGTHMSLVLAGAY-G-ISFEEAEQYKRDP---------------------- 192 (267)
T ss_pred cEEEEeCCCcEEEEEEECCeEEEEecccCchHHHHHHHHHHh-C-CCHHHHHHHHhcc----------------------
Confidence 5999999998866665566777777888888766422 2222 1 2344432221110
Q ss_pred CccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhc
Q psy11663 121 PGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWS 200 (297)
Q Consensus 121 ~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws 200 (297)
.+++++ ..++.-+...+.+..--.-+...++.|+++|.- ...|-+-+.++..+
T Consensus 193 ---------------------~~~~~~-~~ii~~~~~~i~~~i~~~l~~~~~~~IvLtGG~-s~lpgl~e~l~~~l---- 245 (267)
T PRK15080 193 ---------------------KHHKEI-FPVVKPVVEKMASIVARHIEGQDVEDIYLVGGT-CCLPGFEEVFEKQT---- 245 (267)
T ss_pred ---------------------CCHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCc-ccchhHHHHHHHHh----
Confidence 011221 223333333333333222334588999999977 44566666666544
Q ss_pred cCCceEEEeccCCchhhHHHHH
Q psy11663 201 KGAVQSLFLRHEGYLGAIGAFL 222 (297)
Q Consensus 201 ~g~~~a~Fl~h~gY~GAlg~~l 222 (297)
. ++..-..++.|.+|+|+.+
T Consensus 246 g--~~v~~~~~P~~~~a~Gaa~ 265 (267)
T PRK15080 246 G--LPVHKPQHPLFVTPLGIAL 265 (267)
T ss_pred C--CCcccCCCchHHHHHHHHh
Confidence 2 2233468999999999986
No 43
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=92.06 E-value=5.5 Score=39.30 Aligned_cols=165 Identities=16% Similarity=0.095 Sum_probs=92.2
Q ss_pred CCCCeEEEEcCCceEEEEEecCCceEEecccc-cChh-hHHHHHHhhcCCC----CHHHHHHHHhcCCCCCCceeecccc
Q psy11663 38 NIFPYLLVNIGSGVSIMKVESDSKVERIGGTA-TGGG-TFWGLGSLLTKAK----GFDELLELAEKGDHRHADMLVRDIY 111 (297)
Q Consensus 38 ~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~-IGGG-T~~GL~~LLt~~~----~fdeil~lA~~Gd~~~vDllV~DIY 111 (297)
..||..|+--|-=|.++. .+.++|+.+|.|. +.-| .|==.+|+| |.. -=-.|-++|++|+. .+++-.. +=
T Consensus 123 ~~~Pl~LlVSGGhT~l~~-~~~~~~~ilG~T~Dda~Gea~DKvar~L-GL~~yp~gGp~iE~lA~~g~~-~~~~P~~-~~ 198 (345)
T PTZ00340 123 AENPVVLYVSGGNTQVIA-YSEHRYRIFGETIDIAVGNCLDRFARLL-NLSNDPAPGYNIEQLAKKGKN-LIELPYV-VK 198 (345)
T ss_pred CCCCeEEEEeCCceEEEE-ecCCeEEEEEeecccchhHHHHHHHHHh-CCCCCCCChHHHHHHHhhCCC-ccCCCCC-CC
Confidence 347844444444455555 7778999999886 3333 233333443 322 23456678888853 2222211 00
Q ss_pred CCCCCCCCCCccccccccccccccCCc-------c-C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q psy11663 112 GGDYKCLGLPGDLIASSFGRVCKQDTM-------E-G--QCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYF 181 (297)
Q Consensus 112 g~~~~~~gL~~d~~ASsFGK~~~~~~~-------~-~--~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~f 181 (297)
+.+..--||..... +.....+. + + +..++|+|+|+...|...+......+.+.+++++++++|..
T Consensus 199 ~~dfSFSGlkTav~-----~~i~~~~~~~~~~~~~~~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGV 273 (345)
T PTZ00340 199 GMDMSFSGILTYIE-----DLVEHPQFKDVVSEIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGV 273 (345)
T ss_pred CCcEECccHHHHHH-----HHHHhccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCH
Confidence 01111112221110 00000000 0 1 23478999999999999999999999999999999999987
Q ss_pred cccchhcHHHHHHHhhhhccCCceEEEeccCCchh
Q psy11663 182 LRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLG 216 (297)
Q Consensus 182 i~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~G 216 (297)
-. |..+.+.++...+ +..++.+|+ -..|++
T Consensus 274 Aa-N~~LR~~l~~~~~---~~~~~~~~p-~~~~ct 303 (345)
T PTZ00340 274 GC-NLRLQEMMQQMAK---ERGGKLFAM-DERYCI 303 (345)
T ss_pred HH-HHHHHHHHHHHHH---HcCCEEEeC-ChHhhh
Confidence 55 4555555553221 345677665 355655
No 44
>PRK10331 L-fuculokinase; Provisional
Probab=91.99 E-value=6.3 Score=39.44 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhH
Q psy11663 141 QCSEADLARSLLFAISNDIGQIASLYAMM--HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAI 218 (297)
Q Consensus 141 ~~s~eDia~SLl~Mv~~nIgqlA~l~A~~--~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAl 218 (297)
..+++|++|+++.-|++++-+.--..-+. ..+++|+.+|.-- .++..|+.++... . .....++..+ .+|+
T Consensus 357 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga-~s~~w~Qi~Advl----g--~pV~~~~~~e-~~a~ 428 (470)
T PRK10331 357 NTTRGHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGS-RNALWNQIKANML----D--IPIKVLDDAE-TTVA 428 (470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccc-cCHHHHHHHHHhc----C--CeeEecCccc-chHH
Confidence 45799999999999999997765555443 3589999999974 5788888888665 2 2223344333 7899
Q ss_pred HHHHhh
Q psy11663 219 GAFLRG 224 (297)
Q Consensus 219 g~~l~~ 224 (297)
||.+..
T Consensus 429 GaA~la 434 (470)
T PRK10331 429 GAAMFG 434 (470)
T ss_pred HHHHHH
Confidence 998865
No 45
>PLN02669 xylulokinase
Probab=91.58 E-value=12 Score=38.75 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHH
Q psy11663 141 QCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGA 220 (297)
Q Consensus 141 ~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~ 220 (297)
..+++|++|+++.-++..+-...-..-....+++|+++|.- ..++..++.++-.+. ....-++.++ .+|+||
T Consensus 415 ~~~~~~~~RAvlEg~a~~~r~~~~~l~~~~~~~~i~~~GGg-s~s~~w~Qi~ADVlg------~pV~~~~~~e-a~alGA 486 (556)
T PLN02669 415 EFDPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIATGGA-SANQSILKLIASIFG------CDVYTVQRPD-SASLGA 486 (556)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCh-hcCHHHHHHHHHHcC------CCeEecCCCC-chHHHH
Confidence 36799999999999998886655444222347899999986 467888888886662 2223345554 779999
Q ss_pred HHhh
Q psy11663 221 FLRG 224 (297)
Q Consensus 221 ~l~~ 224 (297)
.+..
T Consensus 487 A~~A 490 (556)
T PLN02669 487 ALRA 490 (556)
T ss_pred HHHH
Confidence 9875
No 46
>PRK07058 acetate kinase; Provisional
Probab=90.88 E-value=1.2 Score=44.84 Aligned_cols=139 Identities=21% Similarity=0.209 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccCh----hhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGG----GTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGD 114 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGG----GT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~ 114 (297)
.-..|++-+|+|.|+..+.+.. .=-|++|- |-.|| -| +|.-|+.-++.|.++++.+ +|=+-+-+++ .
T Consensus 200 ~~~~Iv~HLG~G~Si~Ai~~Gk----svDtsmG~tpLeGL~mg-tR--sG~ldp~~l~~l~~~~~~s-~~el~~~Ln~-~ 270 (396)
T PRK07058 200 RGKVVAAHLGSGASLCALDAGK----SRDTSMGFSTLDGIPMA-TR--CGALDPGVVLHLLKQEGMS-LDEVEDLLYH-R 270 (396)
T ss_pred cCCEEEEEeCCCceeeeeeCCE----EEEcCCCCCCcCCCccc-CC--CCCCChHHHHHHHHhcCCC-HHHHHHHHhc-c
Confidence 3478999999999999998863 33455553 33444 33 5777899999998876432 2222222232 2
Q ss_pred CCCCC---CCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcEEEEeccccccchhcHH
Q psy11663 115 YKCLG---LPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG-QIASLYAMMHKLKKVYFGGYFLRNHPLSMH 190 (297)
Q Consensus 115 ~~~~g---L~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg-qlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~ 190 (297)
..-+| ++.|+ =.+. .. ...-|+-.+.|+++-|. +++.+.|.+-+++-|||+|.-=.+.+.+.+
T Consensus 271 SGLlg~sG~s~D~-----R~l~-------~~-~d~~A~lA~d~f~yri~k~IGa~~a~Lg~vDaiVfTGGIgEns~~vr~ 337 (396)
T PRK07058 271 SGLLGVSGISGDT-----RDLL-------AS-DAPEAREALDLFALRIAGEIARLAATLGGLDAVVFTAGIGEHQPAIRA 337 (396)
T ss_pred cCcEEecCCCCCH-----HHHh-------hc-CCHhHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHH
Confidence 22222 22232 1111 00 12346666777766665 577777888999999999988667777777
Q ss_pred HHHHHhhhh
Q psy11663 191 TISFSIKYW 199 (297)
Q Consensus 191 ~l~~av~fw 199 (297)
.+...+.|.
T Consensus 338 ~i~~~l~~l 346 (396)
T PRK07058 338 AVCERLAWL 346 (396)
T ss_pred HHHhhhhhh
Confidence 777667664
No 47
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=90.68 E-value=1 Score=44.62 Aligned_cols=150 Identities=19% Similarity=0.134 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCceEEEEE-ecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCC
Q psy11663 39 IFPYLLVNIGSGVSIMKV-ESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKC 117 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV-~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~ 117 (297)
..|-.++||| |+|=+-+ ..++. ..=--|+=|=.-+=..++..++ .+||+=-++|++|.... -++++.-..+|=.
T Consensus 157 ~~~~~~lNIG-GIaNiT~l~~~~~-~~~fDtGPGN~liD~~~~~~~~-~~yD~~G~~A~~G~v~~--~ll~~ll~~pyf~ 231 (364)
T PF03702_consen 157 KKPRAVLNIG-GIANITFLPPGGD-VIGFDTGPGNMLIDAWIQRHTG-LPYDKDGEWAASGKVNE--ELLDRLLSHPYFK 231 (364)
T ss_dssp TS-EEEEEES-SEEEEEEE-TTS---EEEEEEESSHHHHHHHHHHCS--SS-GGGHHHHCS---H--HHHHHHHTSHHHH
T ss_pred CCCEEEEecC-CceEEEEecCCCC-ceeeccCcHHHHHHHHHHHHhC-CCcCcCcHhhCcCCCCH--HHHHHHhcCcccc
Confidence 3578999999 4443333 33222 1112333444344456778888 89999899999995321 2233443333333
Q ss_pred CCCCccccccccccccccC-CccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHh
Q psy11663 118 LGLPGDLIASSFGRVCKQD-TMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSI 196 (297)
Q Consensus 118 ~gL~~d~~ASsFGK~~~~~-~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av 196 (297)
..-|+++----||-..-++ -.....++||+.+.|....+++|.+---... ..+++|+++|.=.+ |+.+|+.|+..+
T Consensus 232 ~~pPKStGrE~F~~~~l~~~l~~~~~~~~D~~aTlt~~TA~sI~~~i~~~~--~~~~~v~v~GGGa~-N~~L~~~L~~~l 308 (364)
T PF03702_consen 232 RPPPKSTGREDFGLEWLQQILDKFSLSPEDILATLTEFTAQSIADAIRRFP--PQPDEVYVCGGGAR-NPFLMERLQERL 308 (364)
T ss_dssp S-SS----TTTSSHHHHHHHCTTSTT-HHHHHHHHHHHHHHHHHHHHHHH---TT-EEEEEESGGGG--HHHHHHHHHH-
T ss_pred CCCCCcCCccccCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcC--CCCceEEEECCCcC-CHHHHHHHHhhC
Confidence 3345555444455311000 0111227999999999999999986544432 33889999998854 799999998655
No 48
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=90.52 E-value=8.4 Score=35.43 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHH
Q psy11663 168 MMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222 (297)
Q Consensus 168 ~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l 222 (297)
+..+++.|+++|.- ...|-+-+.++..+ +++..-..++.|.+|+||.|
T Consensus 191 ~~~~~~~v~LtGG~-a~ipgl~e~l~~~l------g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 191 EGQGVKDLYLVGGA-CSFSGFADVFEKQL------GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HhCCCCEEEEECch-hcchhHHHHHHHHh------CCCcccCCCCCeehhheeec
Confidence 45688999999977 34565666666544 23334468999999999976
No 49
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=90.38 E-value=1.2 Score=43.82 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCcEEEEeccccccchhcHHHHHHHhhh
Q psy11663 145 ADLARSLLFAISNDIGQIASLYAMMH--KLKKVYFGGYFLRNHPLSMHTISFSIKY 198 (297)
Q Consensus 145 eDia~SLl~Mv~~nIgqlA~l~A~~~--~ik~Ivf~G~fi~~~~~~m~~l~~av~f 198 (297)
+..|+.++.+.++.++.....++-.. +.+.|||+|..-. ++..++.+...+++
T Consensus 265 D~~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e-~~~l~~~I~~~l~~ 319 (351)
T TIGR02707 265 DEKAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAY-SKYFVSEIIKRVSF 319 (351)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhc-CHHHHHHHHHHHHh
Confidence 44689999999999996555555555 7999999998654 45556777766655
No 50
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=90.15 E-value=11 Score=37.62 Aligned_cols=115 Identities=10% Similarity=0.069 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCCCCCCceeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11663 88 FDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYA 167 (297)
Q Consensus 88 fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A 167 (297)
|+++.++|++-....-.++ |..+ + +.++.-++-|| +. .+.+++|++|+++.-|++++-+.--...
T Consensus 323 ~~~l~~~a~~~~~g~~gl~--~~~p--~----~~~~a~g~~~G-l~------~~~~~~~l~rAvlEgia~~~r~~~e~l~ 387 (465)
T TIGR02628 323 YQMMIEEARLIANGADGVV--NFQC--D----LLSCGQGGIQG-LT------LNTTRGHIYRAALEGLTAQLKRNLQMLE 387 (465)
T ss_pred HHHHHHHHHhCCCCCCcce--eecc--c----CCcccceeEEC-CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888765332221122 1111 1 22344444555 32 3567999999999999999988876666
Q ss_pred HH--cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhc
Q psy11663 168 MM--HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGA 225 (297)
Q Consensus 168 ~~--~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~ 225 (297)
+. ..+++|+.+|.- ..++..|+.++... +.....+++.+ .+|+||.+...
T Consensus 388 ~~~~~~~~~i~~~GGg-a~s~~w~Qi~Adv~------g~pV~~~~~~e-~~~lGaA~~a~ 439 (465)
T TIGR02628 388 QIGQFKASELLLVGGG-SKNTLWNQIRANML------DIPVKVVDDAE-TTVAGAAMFGF 439 (465)
T ss_pred HhcCCCcceEEEecCc-cCCHHHHHHhhhhc------CCeeEeccCCc-chHHHHHHHHH
Confidence 54 357899999987 45687888887655 34444556554 67899998653
No 51
>KOG2517|consensus
Probab=88.49 E-value=5.4 Score=41.48 Aligned_cols=165 Identities=19% Similarity=0.179 Sum_probs=103.2
Q ss_pred eEEEEcCCceEEEEEecCCc-------eEEecccc---------------cChhhHHHHHHhhcCCCCHHHHHHHHhcCC
Q psy11663 42 YLLVNIGSGVSIMKVESDSK-------VERIGGTA---------------TGGGTFWGLGSLLTKAKGFDELLELAEKGD 99 (297)
Q Consensus 42 yLlVNIGSGvSi~kV~~~~~-------~~RIgGS~---------------IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd 99 (297)
.-....|+|+-+..+.++.. +.-+||-+ +.|-.+..|...+.-.++.+++.++++.=+
T Consensus 270 ~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~ 349 (516)
T KOG2517|consen 270 CAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEELNEIEKLAAEVN 349 (516)
T ss_pred ceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Confidence 45556666666666665432 22333333 223334444444555566777777776543
Q ss_pred CCCCcee-eccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH-cCCcEEE
Q psy11663 100 HRHADML-VRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQI-ASLYAMM-HKLKKVY 176 (297)
Q Consensus 100 ~~~vDll-V~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgql-A~l~A~~-~~ik~Iv 176 (297)
...|+- |.|-- |.+..+ .++++=+.-+|- ..+.++|+||++++..|++.+=++ ..+.... +.++++.
T Consensus 350 -~t~d~~f~P~f~-G~~sP~-~d~~arg~i~Gl-------s~~ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~ 419 (516)
T KOG2517|consen 350 -LTSDVHFVPDFH-GLRSPY-ADPTARGVIIGL-------SQDTSKEHLARAALEAIAFQTREILEAMERDGGHPISTLR 419 (516)
T ss_pred -ccCceEEEcccc-CCCCCC-CCcccceeEEEe-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceee
Confidence 455554 33322 233322 445554444542 256799999999999999988775 3344444 7899988
Q ss_pred EeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 177 FGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 177 f~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
+.|.. ..|+..|+.++-.+ .+...+++.-+= +++||.+.+
T Consensus 420 ~~GG~-s~N~ll~Q~~ADi~------g~pv~~p~~~e~-~~~GaA~l~ 459 (516)
T KOG2517|consen 420 VCGGL-SKNPLLMQLQADIL------GLPVVRPQDVEA-VALGAAMLA 459 (516)
T ss_pred ecccc-ccCHHHHHHHHHHh------CCccccccchhH-HHHHHHHHH
Confidence 88887 55788998888665 267777888777 999998765
No 52
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=87.52 E-value=35 Score=34.68 Aligned_cols=127 Identities=20% Similarity=0.120 Sum_probs=79.4
Q ss_pred ceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCC--CCCCceeeccccCCCCCCCCCCccccccccccccccCCc
Q psy11663 61 KVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGD--HRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTM 138 (297)
Q Consensus 61 ~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd--~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~ 138 (297)
.+.+.+++..||..+..+.+..-...++.++...+..=. ....+++...--.+ .......++.-+.-+|-
T Consensus 295 ~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~-er~p~~~~~~r~~~~g~------- 366 (502)
T COG1070 295 WFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSG-ERGPHADPAARGGFVGL------- 366 (502)
T ss_pred eEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccC-CcCCCCCccceeEEEcc-------
Confidence 445788888999999988888777656666666554433 22233333222211 11111212221233332
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcEEEEeccccccchhcHHHHHHHh
Q psy11663 139 EGQCSEADLARSLLFAISNDIGQIASLYAM--MHKLKKVYFGGYFLRNHPLSMHTISFSI 196 (297)
Q Consensus 139 ~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~--~~~ik~Ivf~G~fi~~~~~~m~~l~~av 196 (297)
....++++++|+++--++.++...--...+ ....++|+++|..-+ ++.-++.++-+.
T Consensus 367 ~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgar-s~~w~Qi~Ad~~ 425 (502)
T COG1070 367 TLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGAR-SPLWLQILADAL 425 (502)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCccc-CHHHHHHHHHHc
Confidence 234589999999999999999874444433 567788999999966 588888888666
No 53
>PRK12440 acetate kinase; Reviewed
Probab=85.11 E-value=20 Score=36.22 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHh-hcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSL-LTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKC 117 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~L-Lt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~ 117 (297)
.-..|+.-.|+|.|+..+.+. |.=-|++|-+.+-||.-= =+|.-|+.-+.-+.++| -.+|=+.+-+++ ...-
T Consensus 200 ~~~~Iv~HLG~G~Si~Ai~~G----ksvDtsmG~tPl~GL~MgtRsG~idp~vv~~l~~~~--~s~~e~~~~Ln~-~SGL 272 (397)
T PRK12440 200 ESSFISVHLGNGASVCAIKNG----QSVDTSMGFTPLSGLMMGTRCGDLDPGIIEFLLKKG--WSQEKVFNSLNK-KSGF 272 (397)
T ss_pred HcCEEEEEeCCCcEeeeeeCC----EEEEcCCCCCCCCCCCCCCcCCCCCHHHHHHHHHcC--CCHHHHHHHHhc-cccc
Confidence 347899999999999999876 333455665666555110 02344666333344332 122222212232 2222
Q ss_pred CCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHh
Q psy11663 118 LGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG-QIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSI 196 (297)
Q Consensus 118 ~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg-qlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av 196 (297)
+|+++- -+.+=.+.. . .+ ....-|+-.+.|+++-|. +++.+.|.+.+++-|||+|.-=.+.+.+.+.+...+
T Consensus 273 lg~sG~--s~D~R~l~~---~-~~-~gd~~A~lA~d~f~yri~k~Ig~~~a~l~gvDaiVFTgGIGen~~~vr~~i~~~l 345 (397)
T PRK12440 273 LGVSGL--TSDARGILE---A-ME-EGHEGATLAFEVFTYRVAKYIASYLAALDSLDGIIFTGGIGENSLPIRREILKNL 345 (397)
T ss_pred eEecCC--CCCHHHHHH---H-HH-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhh
Confidence 222220 111211210 0 00 112345566666666664 677888888999999999988777776777777677
Q ss_pred hhhc
Q psy11663 197 KYWS 200 (297)
Q Consensus 197 ~fws 200 (297)
.|..
T Consensus 346 ~~lg 349 (397)
T PRK12440 346 KLLG 349 (397)
T ss_pred hhhc
Confidence 6654
No 54
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=83.52 E-value=5.8 Score=37.23 Aligned_cols=147 Identities=20% Similarity=0.184 Sum_probs=83.7
Q ss_pred CCCeEEEEc-CCceEEEEEecCCceEEecccc--cChhhHHHHHHhhc-CCCCHHHHHHHHhcCCCCCCceeeccccCCC
Q psy11663 39 IFPYLLVNI-GSGVSIMKVESDSKVERIGGTA--TGGGTFWGLGSLLT-KAKGFDELLELAEKGDHRHADMLVRDIYGGD 114 (297)
Q Consensus 39 ~~PyLlVNI-GSGvSi~kV~~~~~~~RIgGS~--IGGGT~~GL~~LLt-~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~ 114 (297)
.|| +++-+ |.-+.++.+++ +.|+.+|+|. .-|=.+.-+.++|- ....--++-++|.+| ...++-..-.
T Consensus 104 ~~P-~~~~isa~~~~vy~~~~-~~~~~~~~t~d~~~ge~~dk~~~~l~l~~~~g~~le~la~~~--~~~~~p~~~~---- 175 (268)
T PF00814_consen 104 KFP-LVLLISAGHTEVYLAEG-GDYEILGETLDDAIGEAFDKVARLLGLPYPGGPALEKLASEG--EAFKFPRPLK---- 175 (268)
T ss_dssp ESE-EEEEEECSTCEEEEEET-TEEEEECCBSSSCHHHHHHHHHHHTT--SSHHHHHHHHHCT---S------SEE----
T ss_pred cCc-eEEEEECCCccEEEEEe-eEEEeeccccccccHHHHhhHHHHhccccccCcHHHHHHHhC--Ccceecccee----
Confidence 577 44443 33355666666 7899998884 55667777777773 332233567788887 3333221000
Q ss_pred CCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHH
Q psy11663 115 YKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISF 194 (297)
Q Consensus 115 ~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~ 194 (297)
. ..-||--... .......++|+|+++...+...+...+-.+.+..++++++++|..-. |..+.+.+..
T Consensus 176 ----~-----~~~sFsG~~t--~~~~~i~~~~iA~s~q~~~~~~l~~~~~~a~~~~~~~~lv~~GGVaa-N~~lr~~l~~ 243 (268)
T PF00814_consen 176 ----N-----CDFSFSGLKT--AVYRLIEKADIAASFQEAIADHLAKKAPRALEKPRAKSLVVSGGVAA-NKYLREGLRK 243 (268)
T ss_dssp ----T-----TEEEEHHHHH--HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGG-HHHHHHHHHH
T ss_pred ----e-----eeEEEEcccH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHH-HHHHHHHHHH
Confidence 0 1111110000 00001112999999999999999999999999999999999998754 4444444442
Q ss_pred HhhhhccCCceEEEe
Q psy11663 195 SIKYWSKGAVQSLFL 209 (297)
Q Consensus 195 av~fws~g~~~a~Fl 209 (297)
.. .. .++.+|+
T Consensus 244 ~~---~~-~~~~~~p 254 (268)
T PF00814_consen 244 LC---SE-GIKLFFP 254 (268)
T ss_dssp HH---HH-TSEEE--
T ss_pred HH---Hc-CCEEEcC
Confidence 11 12 4666664
No 55
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=82.56 E-value=60 Score=33.02 Aligned_cols=75 Identities=15% Similarity=-0.006 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHH
Q psy11663 142 CSEADLARSLLFAISNDIGQIASLYAM--MHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIG 219 (297)
Q Consensus 142 ~s~eDia~SLl~Mv~~nIgqlA~l~A~--~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg 219 (297)
.+++|++|+++.-|++.+-+.--...+ ...+++|+.+|.. ..++..++.++-.. . ....-+++. -.+|+|
T Consensus 378 ~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvl----g--~pV~~~~~~-e~~alG 449 (520)
T PRK10939 378 CNKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGG-SKGKLWSQILADVT----G--LPVKVPVVK-EATALG 449 (520)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-ccCHHHHHHHHHhc----C--CeeEEeccc-CchHHH
Confidence 478999999999999988766555443 2347899999996 45677787877555 2 233333433 368999
Q ss_pred HHHhh
Q psy11663 220 AFLRG 224 (297)
Q Consensus 220 ~~l~~ 224 (297)
|.+..
T Consensus 450 aA~lA 454 (520)
T PRK10939 450 CAIAA 454 (520)
T ss_pred HHHHH
Confidence 98764
No 56
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=82.21 E-value=10 Score=37.85 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=70.8
Q ss_pred CCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHh-hcCCCCHHHHHHHHhcCCCCCCceeeccccCCC--CC
Q psy11663 40 FPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSL-LTKAKGFDELLELAEKGDHRHADMLVRDIYGGD--YK 116 (297)
Q Consensus 40 ~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~L-Lt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~--~~ 116 (297)
-..|+.-+|+|.|+..+.+... =-|++|-..+-||..- =+|.-|+..++.|++++..+ .|=+-+-+|+.+ ..
T Consensus 199 ~~lIvaHLG~G~Sv~A~~~Grs----vDtsmG~tpleGl~m~tRsG~ldp~~~~~l~~~~~~s-~~e~~~~l~~~sGL~g 273 (388)
T PF00871_consen 199 LNLIVAHLGSGASVCAIKNGRS----VDTSMGFTPLEGLMMGTRSGDLDPGVLLYLCRSGGMS-ADELERLLNKESGLLG 273 (388)
T ss_dssp -EEEEEEESSSEEEEEEETTEE----EEESBTSSTTSSS--SSB--S--THHHHHHHHHCT---HHHHHHHHHHSSHHHH
T ss_pred cCEEEEEeCCCcEEEEEECCEE----EEecCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCC-HHHHHHHHHhccCcEe
Confidence 4789999999999999988632 2355553322222110 12444777788888665421 111111123221 11
Q ss_pred CCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHc-CCcEEEEeccccccchhcHHHHHH
Q psy11663 117 CLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDI-GQIASLYAMMH-KLKKVYFGGYFLRNHPLSMHTISF 194 (297)
Q Consensus 117 ~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nI-gqlA~l~A~~~-~ik~Ivf~G~fi~~~~~~m~~l~~ 194 (297)
-.|++.|+ -.+.. ....-.+ -|+-.+.++++.| -+++.++|.++ +++-|||+|..=.+.+.+-+.+..
T Consensus 274 ~sG~s~D~-----r~i~~----~~~~gd~-~A~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~ 343 (388)
T PF00871_consen 274 LSGISNDM-----REIEA----RIEEGDE-RAKLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICR 343 (388)
T ss_dssp HHSSSS-H-----HHHHH----HHHTT-H-HHHHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHC
T ss_pred ccCCCCCH-----HHHHH----HHhcCCH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHh
Confidence 11222222 22210 0001122 3555555555555 56888889996 999999999875555544444444
Q ss_pred Hh
Q psy11663 195 SI 196 (297)
Q Consensus 195 av 196 (297)
..
T Consensus 344 ~l 345 (388)
T PF00871_consen 344 KL 345 (388)
T ss_dssp TG
T ss_pred hc
Confidence 33
No 57
>PRK12379 propionate/acetate kinase; Provisional
Probab=80.90 E-value=10 Score=38.26 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=82.7
Q ss_pred CCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCC
Q psy11663 40 FPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLG 119 (297)
Q Consensus 40 ~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~g 119 (297)
-..|++-.|+|.|+..+.+.....---|-.=+.|-+||- =+|.-|+..++.|.+++.. .+|=+.+-+++. ..-+|
T Consensus 197 ~~lIv~HLG~G~Si~Ai~~GksvDtsmG~tPleGl~mgt---RsG~ldp~~l~~l~~~~~~-s~~el~~~Lnk~-SGLlg 271 (396)
T PRK12379 197 SGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGT---RSGDVDFGAMAWIASQTGQ-TLGDLERVVNKE-SGLLG 271 (396)
T ss_pred CCEEEEEeCCCcchheeeCCEEEEeCCCCCcccCCCCCC---CCCCCChHHHHHHHHhcCC-CHHHHHHHHhcc-ccceE
Confidence 378999999999999998864333222322233434432 1244577778888776643 222222222322 12222
Q ss_pred CCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhh
Q psy11663 120 LPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG-QIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKY 198 (297)
Q Consensus 120 L~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg-qlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~f 198 (297)
+++- -+.+=.+. .. .+ ....-|+-.+.|+++-|. +++.+.|.+.+++-|||+|.-=.+.+.+-+.+...+.|
T Consensus 272 ~sG~--s~D~R~v~---~~-~~-~gd~~A~lA~d~f~yri~k~IGa~~a~L~~vDaIVFTGGIGen~~~vR~~i~~~L~~ 344 (396)
T PRK12379 272 ISGL--SSDLRVLE---KA-WH-EGHERAQLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSSLIRRLVMEHLAV 344 (396)
T ss_pred ecCC--CCCHHHHH---HH-HH-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhhh
Confidence 2210 01111111 00 00 112345666677766665 57777788889999999998877777666666666665
Q ss_pred hc
Q psy11663 199 WS 200 (297)
Q Consensus 199 ws 200 (297)
..
T Consensus 345 lG 346 (396)
T PRK12379 345 LG 346 (396)
T ss_pred cC
Confidence 43
No 58
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=80.81 E-value=4.7 Score=40.61 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=85.1
Q ss_pred CCeEEEEcCCceEEEEEecCCceEEecccccC----hhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCC
Q psy11663 40 FPYLLVNIGSGVSIMKVESDSKVERIGGTATG----GGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDY 115 (297)
Q Consensus 40 ~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IG----GGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~ 115 (297)
-..|++-+|+|.|+..+.+. |.=-|++| .|-+||- | +|.-|+..++.|.+++..+ +|=+-+-+|+.+
T Consensus 202 ~~lIvaHLG~GaSi~Ai~~G----rsvDtsmG~tpleGl~m~t-R--sG~ldp~~v~~l~~~~~~s-~~el~~~L~~~s- 272 (402)
T PRK00180 202 LNLITCHLGNGASIAAIKNG----KSVDTSMGFTPLEGLVMGT-R--SGDIDPAIIPYLMEKLGMS-VDEIDNLLNKKS- 272 (402)
T ss_pred cCEEEEEeCCCceeeeeeCC----EEEEeCCCCCcccCCCCCC-C--CCCCChHHHHHHHHhcCCC-HHHHHHHHhccc-
Confidence 47899999999999999886 33345555 3334432 1 4556888888888776432 222222234321
Q ss_pred CCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHH-cCCcEEEEeccccccchhcHHHHH
Q psy11663 116 KCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDI-GQIASLYAMM-HKLKKVYFGGYFLRNHPLSMHTIS 193 (297)
Q Consensus 116 ~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nI-gqlA~l~A~~-~~ik~Ivf~G~fi~~~~~~m~~l~ 193 (297)
.-+|+++ +.+.|-.+.. ..+.. ..-|+-.+.|+++-| -+++.+.|.+ -+++-|||+|..=.+.+.+.+.+.
T Consensus 273 GLlg~sG--~s~D~Rel~~----~~~~g-d~~A~lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~ 345 (402)
T PRK00180 273 GLLGLSG--VSSDMRDIEA----AAEEG-DERAKLALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVL 345 (402)
T ss_pred cceEecC--CCCCHHHHHH----HHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHH
Confidence 2222211 0112222210 00001 234555555555555 4677788888 889999999988667787887887
Q ss_pred HHhhhhc
Q psy11663 194 FSIKYWS 200 (297)
Q Consensus 194 ~av~fws 200 (297)
..+.|..
T Consensus 346 ~~l~~lG 352 (402)
T PRK00180 346 EGLEFLG 352 (402)
T ss_pred hhhhhcC
Confidence 7777654
No 59
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=6.3 Score=42.52 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEec
Q psy11663 141 QCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLR 210 (297)
Q Consensus 141 ~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~ 210 (297)
...++++|...-+.+++-++.++...|+..|+++|+++|..+.|.. +.+.+.... .+.+.+.+|.+
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~~gi~~V~lsGGVf~N~~-l~~~~~~~l---~~~~f~~~~~~ 728 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKKYGINKVVLSGGVFQNRL-LLERLAKYL---KKEGFRFLFHQ 728 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccEEEeeCCeeecHH-HHHHHHHHH---HhcCceEeeec
Confidence 5788999999999999999999999999999999999999988654 333443222 23345555544
No 60
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=80.44 E-value=49 Score=30.62 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhcc-CCceEEEeccCCchhhHHHHHhh
Q psy11663 146 DLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSK-GAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 146 Dia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~-g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
..|+.++.-.+..+++.........+.++||+.|.... .+..++.+...++-... ...+...-+.+...+++||....
T Consensus 208 ~~a~~~~~~~~~~la~~l~~l~~~~dpe~IvlgG~~~~-~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 208 EQAQALINRSAQAIARLIADLKATLDCQCVVLGGSVGL-AEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCcccc-HHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 35677888888899998888899999999999998543 45445555544432111 13445556667888999998754
No 61
>PRK00976 hypothetical protein; Provisional
Probab=78.95 E-value=70 Score=31.58 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchh-cHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 147 LARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPL-SMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 147 ia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~-~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
.|+-.+.-++..++....-..-..+.+.||+.|..-+..+. ..+.+...+ .+ . ..+.++-.|++||.+-.
T Consensus 239 ~A~~aid~~~~~LA~~IAnLi~llDPe~IVLGGGVS~~~e~~L~~~I~e~l---~~-~----~a~LG~dAGaiGAA~iA 309 (326)
T PRK00976 239 KAKLAIDTLALFVAMEIASLLLLNPEDNVVLAGSVGEMDEPDVSERIKELL---DK-K----VLVLGKESAAIGLALIA 309 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCccccCchhHHHHHHHHHh---cc-c----ccccCCchHHHHHHHHH
Confidence 46667777777777777777777789999999987544322 222333211 11 1 34668899999998744
No 62
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=76.93 E-value=25 Score=34.88 Aligned_cols=132 Identities=22% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCc-eEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCC
Q psy11663 38 NIFPYLLVNIGSG-VSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYK 116 (297)
Q Consensus 38 ~~~PyLlVNIGSG-vSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~ 116 (297)
+...|++|-||+| ++.+.|.+....-=+|||.- +.| .+..|.-|-|=+-.+.+.. ++.=.++|.+...
T Consensus 152 ~~~nfIlvEiG~~yta~iaV~~GkIVDGiggt~g----~pG--~~~~G~lD~Evay~i~~~~-----~~sK~~lF~gG~~ 220 (343)
T PF07318_consen 152 REVNFILVEIGSGYTAAIAVKNGKIVDGIGGTIG----FPG--YLSHGALDGEVAYLIGNYS-----RFSKNDLFSGGAI 220 (343)
T ss_pred ccceEEEEEccCCceEEEEEECCeEEcccccccc----CCc--cccCCcccHHHHHHhcccc-----ccchhhhhccCce
Confidence 3348999999999 99999998754444455441 344 3445666633222222111 3333445543222
Q ss_pred CCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHh
Q psy11663 117 CLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSI 196 (297)
Q Consensus 117 ~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av 196 (297)
.+.-.. .|- +...++.-+ +.=.|+=.-+=-++.+.+...+.+.|+.+|.+-+. |...+.+...+
T Consensus 221 ~i~~~~-----e~~---------~~~~e~~~~-a~ea~~E~i~k~V~~l~~~~~~~~~IilSGr~~~~-~~~~~~l~~~l 284 (343)
T PF07318_consen 221 KIAGID-----EFA---------KRLKEDEKC-AWEAMIESIVKAVASLLASVPDPDEIILSGRFSRI-PEFRKKLEDRL 284 (343)
T ss_pred eeccch-----HHH---------HhhhcchhH-HHHHHHHHHHHHHHHHhcccCCCCEEEEecccccc-HHHHHHHHHHH
Confidence 111000 111 111111111 22222222222344677777899999999999764 55666666555
No 63
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=75.67 E-value=17 Score=33.94 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhc----cCCceEEEeccCCchhhHHH
Q psy11663 145 ADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWS----KGAVQSLFLRHEGYLGAIGA 220 (297)
Q Consensus 145 eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws----~g~~~a~Fl~h~gY~GAlg~ 220 (297)
+..|+.++.-.+..+|+.........+-+.||+.|......+..++.+...++=+. ....+...-+.++..+++||
T Consensus 225 D~~a~~i~~~~~~~L~~~i~~~~~~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Ga 304 (318)
T TIGR00744 225 DPVAVDSYREVARWAGAGLADLASLFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGA 304 (318)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHH
Confidence 34678888888899988888888889999999999987777777777765554221 23455667777888899999
Q ss_pred HHhh
Q psy11663 221 FLRG 224 (297)
Q Consensus 221 ~l~~ 224 (297)
....
T Consensus 305 a~~~ 308 (318)
T TIGR00744 305 ADLA 308 (318)
T ss_pred HHHH
Confidence 8754
No 64
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=74.38 E-value=9.8 Score=40.94 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEec
Q psy11663 142 CSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLR 210 (297)
Q Consensus 142 ~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~ 210 (297)
.+++|||+++...++..+..++-.+++.+++++|+++|....| ..+.+.+.... .+..++.+|++
T Consensus 629 ~~~~~IAa~fh~tla~~L~~~a~~~~~~~g~~~VvLSGGVfqN-~~L~~~L~~~L---~~~g~~v~~p~ 693 (711)
T TIGR00143 629 EDRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYN-RLLLERLAKYL---KGLGFQFLFHR 693 (711)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccHHHH-HHHHHHHHHHH---HhCCCEEEccC
Confidence 5789999999999999999999999999999999999998775 44444554333 23356666643
No 65
>PRK12397 propionate kinase; Reviewed
Probab=71.94 E-value=9.2 Score=38.67 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCC
Q psy11663 40 FPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLG 119 (297)
Q Consensus 40 ~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~g 119 (297)
-..|++-+|+|.|+..+.+.....---|-.=..|-+||- =+|.-|+..++.|.+++..+ .|=+-+-+++ ...-+|
T Consensus 201 ~~lIv~HLG~GaSi~Ai~~GksvDtsmG~tPleGl~mgt---RsG~lDp~~l~~l~~~~~~s-~~e~~~~Lnk-~SGLlg 275 (404)
T PRK12397 201 LRVICCHLGNGSSICAIKNGRSVNTSMGFTPQSGVMMGT---RSGDIDPSILPWIAQREGKT-PQQLNQLLNN-ESGLLG 275 (404)
T ss_pred CCEEEEEeCCCcchheeeCCEEEEcCCCCCCCCCCCCCC---CCCCCChHHHHHHHHhcCCC-HHHHHHHHhc-cccceE
Confidence 478999999999999998864433222212123333332 12555888888888775432 1211111232 222222
Q ss_pred CCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhh
Q psy11663 120 LPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG-QIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKY 198 (297)
Q Consensus 120 L~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg-qlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~f 198 (297)
+++- .+.|=.+. . ..+ ....-|+-.+.|+++-|. +++.+.|..-+++-|||+|.-=.|.+.+-+.+...+.|
T Consensus 276 ~sG~--s~D~R~l~---~-~~~-~gd~~A~lA~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEns~~vR~~ic~~L~~ 348 (404)
T PRK12397 276 VSGV--SSDYRDVE---Q-AAN-TGNRQAKLALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNLQF 348 (404)
T ss_pred ecCC--CCCHHHHH---H-HHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhCCHHHHHHHHhhhhh
Confidence 2210 11221111 0 000 012345556666666654 57777778999999999998877777666666666655
Q ss_pred h
Q psy11663 199 W 199 (297)
Q Consensus 199 w 199 (297)
.
T Consensus 349 l 349 (404)
T PRK12397 349 L 349 (404)
T ss_pred c
Confidence 4
No 66
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=71.27 E-value=94 Score=29.39 Aligned_cols=58 Identities=16% Similarity=0.018 Sum_probs=40.1
Q ss_pred CCCC-eEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHh
Q psy11663 38 NIFP-YLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAE 96 (297)
Q Consensus 38 ~~~P-yLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~ 96 (297)
...+ .++|+||.+++-+-+-.++.....--..+||..+---...-.+ -+++|.-++-.
T Consensus 185 ~~~~~~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i~~~~~-~~~~~Ae~~k~ 243 (348)
T TIGR01175 185 YRLTDAALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSELSRAYG-LNPEEAGEAKQ 243 (348)
T ss_pred ccCceEEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHHHHHcC-CCHHHHHHHHh
Confidence 3445 9999999999999888888878888888998876532222222 36666555433
No 67
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=70.45 E-value=17 Score=36.72 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHH-hhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGS-LLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKC 117 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~-LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~ 117 (297)
....|++-+|+|.|+..+.+. |.=-|++|-..+-||.- -=+|.-|+..++.|.++++.+. |=+-+-+++ ...-
T Consensus 205 ~~~~Iv~HLG~G~Si~Ai~~G----ksvDTsmG~tpLeGl~mgtRsG~lDp~~~~~l~~~~~~s~-~e~~~~Ln~-~SGL 278 (404)
T TIGR00016 205 DLNLIVCHLGNGASVCAVKNG----KSIDTSMGFTPLEGLMMGTRSGDIDPAIISYLAETLGMSA-DDIENTLNK-KSGL 278 (404)
T ss_pred HcCEEEEEeCCCceeeeeeCC----EEEEeCCCCCCccCCCCCCCCCCCChHHHHHHHHhcCCCH-HHHHHHHhh-cccc
Confidence 347899999999999999876 33345566333333311 0145568888999888764321 222222232 2222
Q ss_pred CCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcC-CcEEEEeccccccchhcHHHHHHH
Q psy11663 118 LGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG-QIASLYAMMHK-LKKVYFGGYFLRNHPLSMHTISFS 195 (297)
Q Consensus 118 ~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg-qlA~l~A~~~~-ik~Ivf~G~fi~~~~~~m~~l~~a 195 (297)
+|+++- .+.+=.+. ...+.. ..-|+-.+.|+++-|. +++.+.|.+.| ++-|||+|.-=.+.+.+.+.+...
T Consensus 279 lg~sG~--s~D~Rel~----~~~~~g-d~~A~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~ 351 (404)
T TIGR00016 279 LGISGL--SSDLRDIE----DAYAEG-NEQAQLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEA 351 (404)
T ss_pred eEecCC--CCCHHHHH----HHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhh
Confidence 222210 11111111 000011 2345566666666665 57788888885 999999998866777777777766
Q ss_pred hhhhc
Q psy11663 196 IKYWS 200 (297)
Q Consensus 196 v~fws 200 (297)
+.|..
T Consensus 352 l~~lG 356 (404)
T TIGR00016 352 LEFLG 356 (404)
T ss_pred hhhcC
Confidence 76643
No 68
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=69.56 E-value=11 Score=37.95 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHh-hcCCCCHHHHHHHHhcCCCCCCceeecccc---CCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSL-LTKAKGFDELLELAEKGDHRHADMLVRDIY---GGD 114 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~L-Lt~~~~fdeil~lA~~Gd~~~vDllV~DIY---g~~ 114 (297)
.-..|+.-+|+|-|+..|.+... =-|++|--.+-||.== =+|.-||.-+.-++++=. |.+.||- ...
T Consensus 199 ~l~~I~~HLGNGASicAiknGkS----vDTSMGfTPLeGl~MGTRsGdiDP~ii~~l~~~~~-----~s~~~i~~~LNkk 269 (396)
T COG0282 199 DLNLITCHLGNGASICAIKNGKS----VDTSMGFTPLEGLMMGTRSGDIDPGIILYLMEQEG-----MSAEEIDTLLNKK 269 (396)
T ss_pred ccCEEEEEecCchhhhhhhCCee----eccCCCCCcccceeccCCCCCCChHHHHHHHHhcC-----CCHHHHHHHHhhh
Confidence 45689999999999999987633 2477887777776210 124446766777775422 4444442 112
Q ss_pred CCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcEEEEeccccccchhcHHHHH
Q psy11663 115 YKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG-QIASLYAMMHKLKKVYFGGYFLRNHPLSMHTIS 193 (297)
Q Consensus 115 ~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg-qlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~ 193 (297)
..-+||++-. |.|=.+. ......++ |+--+.|+++-|. +++...|.+.+++-|||+|.-=.|.+.+-+.+.
T Consensus 270 SGllGlSg~s--sD~R~l~-----~~~~~g~~-A~lA~~~f~~Ri~kyIg~y~a~L~glDaiVFTaGIGENs~~iR~~v~ 341 (396)
T COG0282 270 SGLLGLSGLS--SDMRDLE-----EAAAEGNE-AKLALDMFVYRIAKYIGSYAAALGGLDALVFTAGIGENSALVRELVC 341 (396)
T ss_pred cccccccccc--chHHHHH-----HHhccCch-HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCccccCcHHHHHHHH
Confidence 3334443211 2221111 11122244 8888999998886 577778889999999999977555565555554
Q ss_pred HHhhh
Q psy11663 194 FSIKY 198 (297)
Q Consensus 194 ~av~f 198 (297)
..+.|
T Consensus 342 ~~L~~ 346 (396)
T COG0282 342 EGLAF 346 (396)
T ss_pred hhhhh
Confidence 55544
No 69
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=67.19 E-value=1.2e+02 Score=29.19 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccChhhHH
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFW 76 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~ 76 (297)
..+.++++||.|++=+-+-.++......-..+||--+-
T Consensus 195 ~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it 232 (371)
T TIGR01174 195 ELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHIT 232 (371)
T ss_pred cCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHH
Confidence 45789999999987555545555454555678876653
No 70
>CHL00094 dnaK heat shock protein 70
Probab=66.74 E-value=41 Score=35.28 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=35.3
Q ss_pred HcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 169 MHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 169 ~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
...++.|+.+|..-| -|.+.+.++..+ + .++.-.-++.-.-|+||.+....
T Consensus 326 ~~~i~~ViLvGGssr-iP~v~~~l~~~f-----g-~~~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 326 KSDIDEVVLVGGSTR-IPAIQELVKKLL-----G-KKPNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred hhhCcEEEEECCccC-ChHHHHHHHHHh-----C-CCcCcCCCchhHHHhhhHHHHHH
Confidence 347889999998845 587777777544 1 12333346788999999987643
No 71
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=65.62 E-value=40 Score=33.22 Aligned_cols=176 Identities=18% Similarity=0.170 Sum_probs=93.5
Q ss_pred eEEEEcCCc----eEEEEEecCCceEEecccc-----cChhhHHHHHHhhcCCCCH---HHHHHHHhcC-CCCCCceeec
Q psy11663 42 YLLVNIGSG----VSIMKVESDSKVERIGGTA-----TGGGTFWGLGSLLTKAKGF---DELLELAEKG-DHRHADMLVR 108 (297)
Q Consensus 42 yLlVNIGSG----vSi~kV~~~~~~~RIgGS~-----IGGGT~~GL~~LLt~~~~f---deil~lA~~G-d~~~vDllV~ 108 (297)
.+||.=|.| +++.+..+ ++.+++-.+. -.=|-|.+....++|.+.. -.++-||.-| +....+-.+.
T Consensus 14 ~vlv~DG~Gd~~s~~~~~~~~-~~~~~~~~~~~~~s~~slG~~Y~~~T~~lGf~~~~~egKvMGLA~YG~~~~~~~~~~~ 92 (360)
T PF02543_consen 14 AVLVIDGGGDGESTSIYHARG-GEIERIRESSYPHSGNSLGYFYEAITEYLGFKPNSDEGKVMGLAAYGKPPDRFDELLE 92 (360)
T ss_dssp EEEEESS-SSSEEEEEEEEET-TEEEE--EEEEEGG-G-HHHHHHHHHHHTTS-TT--HHHHHHHHTTS--S-TTTTTEE
T ss_pred EEEEEECCCCCcceEEEEecC-CEEEEeeeecCCchHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCCchHHHHHHH
Confidence 455555555 33444433 4555543222 2367788888888887644 4488999999 4445555555
Q ss_pred cccCCCCCCCC-CCcc--cccccccccc----ccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcE-EEEecc
Q psy11663 109 DIYGGDYKCLG-LPGD--LIASSFGRVC----KQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKK-VYFGGY 180 (297)
Q Consensus 109 DIYg~~~~~~g-L~~d--~~ASsFGK~~----~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~-Ivf~G~ 180 (297)
+++.......- .+.. .......+.. ...........+|+|+++-..+-..+-.++-.+-+..++++ +.++|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~~~L~laGG 172 (360)
T PF02543_consen 93 ELFSLNFDGDFDFRQKIPFLSTSLLRFIDFFARSPEEPLTQRHADLAASAQKVLEEIVLHLVRHLLERTGIDNNLCLAGG 172 (360)
T ss_dssp EETTEEEETTSHHHHHHHHHSSS----EEEETTTCEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT--SEEEEESG
T ss_pred HHhccccCCCeeeeccccccccchhhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEech
Confidence 55532211000 0000 0000000000 00011123578999999999999999999988889999888 999999
Q ss_pred ccccchhcHHHHHHHhhhhccCCceEEEecc--CCchhhHHHHHhhc
Q psy11663 181 FLRNHPLSMHTISFSIKYWSKGAVQSLFLRH--EGYLGAIGAFLRGA 225 (297)
Q Consensus 181 fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h--~gY~GAlg~~l~~~ 225 (297)
..-|....++... ....+-+|+.= +.==.||||.+...
T Consensus 173 vaLN~~~N~~l~~-------~~~~~~v~V~Pa~gD~G~aiGaA~~~~ 212 (360)
T PF02543_consen 173 VALNCKANGRLLE-------EPGFDNVFVPPAAGDAGLAIGAALYAW 212 (360)
T ss_dssp GGG-HHHHHHHHT-------STT-SEEE--TTTSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------cCCCCeEEECCCCCCcchHHHHHHHHH
Confidence 8777665555443 23344444421 22335889988764
No 72
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=65.10 E-value=36 Score=35.28 Aligned_cols=50 Identities=20% Similarity=0.158 Sum_probs=36.2
Q ss_pred cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 170 HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 170 ~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
..++.|+++|..-| -|.+.+.+...+ + .+..-.-++.-+-|.||.+.+..
T Consensus 323 ~~i~~V~LvGGssr-iP~v~~~i~~~f-----~-~~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 323 SDIDEVILVGGSTR-IPAVQELVKDFF-----G-KEPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred hHCcEEEEECCccc-ChHHHHHHHHHh-----C-CcccCCcCcHHHHHHHHHHHHHH
Confidence 56889999999855 587887777544 2 23334457788999999998654
No 73
>PRK07157 acetate kinase; Provisional
Probab=64.74 E-value=24 Score=35.65 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHh-hcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCC
Q psy11663 38 NIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSL-LTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYK 116 (297)
Q Consensus 38 ~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~L-Lt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~ 116 (297)
..-..|++-.|+|.|+..+.+.. .=-|++|-..+-||.-= =+|.-|+..++.|.+++..+ +|=+-.-+++ ...
T Consensus 197 ~~~~~Iv~HLG~G~Si~Ai~~Gk----svDtsmG~tpLeGl~mgtRsG~ldp~~~~~l~~~~~~s-~~e~~~~Ln~-~SG 270 (400)
T PRK07157 197 DKVNFVNLHIGNGASLCAIKNSK----SIDTSMGLTPLAGVMMGTRSGDIDPSIHEFVAKEANMS-ISEFTDLLNK-KSG 270 (400)
T ss_pred cccCEEEEEeCCCceeeeeeCCe----EEEeCCCCCCccCCCCCCCCCCCChHHHHHHHHhcCCC-HHHHHHHHhh-ccC
Confidence 44588999999999999998763 33455663333333110 13555888888888775422 1111111232 222
Q ss_pred CCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHc-CCcEEEEeccccccchhcHHHHHH
Q psy11663 117 CLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG-QIASLYAMMH-KLKKVYFGGYFLRNHPLSMHTISF 194 (297)
Q Consensus 117 ~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIg-qlA~l~A~~~-~ik~Ivf~G~fi~~~~~~m~~l~~ 194 (297)
-+|+++- .+.+=.+.. ..+ ....-|+-.+.|+++-|. +++.+.|.+. +++-|||+|.-=.+.+.+.+.+..
T Consensus 271 Llg~sG~--s~D~R~l~~----~~~-~gd~~A~lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~ 343 (400)
T PRK07157 271 LLGVSGI--SSDLRDVIK----AAE-SGNKRAKFALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVIN 343 (400)
T ss_pred ceEecCC--CCcHHHHHH----HHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHh
Confidence 2222220 111111110 000 112345556666666665 6788888899 499999999887777767777776
Q ss_pred Hhhhhc
Q psy11663 195 SIKYWS 200 (297)
Q Consensus 195 av~fws 200 (297)
.+.|..
T Consensus 344 ~l~~lG 349 (400)
T PRK07157 344 KINIPN 349 (400)
T ss_pred hccccc
Confidence 666643
No 74
>PRK09557 fructokinase; Reviewed
Probab=63.46 E-value=46 Score=31.02 Aligned_cols=76 Identities=12% Similarity=0.004 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhh---hccCCceEEEeccCCchhhHHHHHh
Q psy11663 147 LARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKY---WSKGAVQSLFLRHEGYLGAIGAFLR 223 (297)
Q Consensus 147 ia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~f---ws~g~~~a~Fl~h~gY~GAlg~~l~ 223 (297)
.|+.++.-.+..+++.........+.+.||+.|..... +..++.+...++- ......+...-..+...+++||...
T Consensus 220 ~a~~~l~~~~~~La~~l~~l~~~ldP~~IvlgG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~ 298 (301)
T PRK09557 220 VAELAFRRYEDRLAKSLAHVINILDPDVIVLGGGMSNV-DRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWL 298 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCcccch-HHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHh
Confidence 57788999999999988888899999999999987664 5566666655542 1222445556667788899999874
No 75
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=60.01 E-value=1.6e+02 Score=28.10 Aligned_cols=116 Identities=20% Similarity=0.232 Sum_probs=63.3
Q ss_pred CCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCC
Q psy11663 40 FPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLG 119 (297)
Q Consensus 40 ~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~g 119 (297)
-+.++|+||...+-+.+-.+++....--..+||..+--...--.+ -+++|.-++-..++.
T Consensus 180 ~~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G~~~l~~~i~~~~~-i~~~~Ae~~k~~~~l------------------- 239 (340)
T PF11104_consen 180 ETVALVDIGASSTTVIIFQNGKPIFSRSIPIGGNDLTEAIARELG-IDFEEAEELKRSGGL------------------- 239 (340)
T ss_dssp -EEEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHTT---HHHHHHHHHHT---------------------
T ss_pred ceEEEEEecCCeEEEEEEECCEEEEEEEEeeCHHHHHHHHHHhcC-CCHHHHHHHHhcCCC-------------------
Confidence 468999999988877776666666666678998888754333333 377776554443321
Q ss_pred CCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HH--HcCCcEEEEeccccccchhcHHHHHHHh
Q psy11663 120 LPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLY-AM--MHKLKKVYFGGYFLRNHPLSMHTISFSI 196 (297)
Q Consensus 120 L~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~-A~--~~~ik~Ivf~G~fi~~~~~~m~~l~~av 196 (297)
|. -...|..+..+.-++..|...--.+ ++ ...+++|+++|.--+ -+-+.+.++..+
T Consensus 240 -~~-------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~-l~gL~~~l~~~l 298 (340)
T PF11104_consen 240 -PE-------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGAR-LPGLAEYLSEEL 298 (340)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGG-STTHHHHHHHHH
T ss_pred -Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccc-hhhHHHHHHHHH
Confidence 11 0134556666666666666553333 32 446999999997633 344555665444
No 76
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=58.94 E-value=2.2e+02 Score=29.25 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=66.4
Q ss_pred eeeccccCCCCCCCCCCccccccccccccccCCccCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH-cCCcEEEEecc
Q psy11663 105 MLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSE---ADLARSLLFAISNDIGQIASLYAMM-HKLKKVYFGGY 180 (297)
Q Consensus 105 llV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~---eDia~SLl~Mv~~nIgqlA~l~A~~-~~ik~Ivf~G~ 180 (297)
+.+-...|...+ -..+++-++-|| +. ..-++ +|++|+++.-|++.+-++--..-+. ..+++|..+|.
T Consensus 382 ~flP~l~G~r~P--~~dp~arG~~~G-l~------~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GG 452 (541)
T TIGR01315 382 HVYPDLWGNRSP--IADPNMRGVIIG-LS------MDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGG 452 (541)
T ss_pred EEccccccCcCC--CCCCCCceEEEC-CC------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecC
Confidence 445555554333 134556566666 32 23345 7899999999999987766555332 23789999998
Q ss_pred ccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 181 FLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 181 fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
- ..++..|+.++-.. ++...-+++.+ .+|+||.+..
T Consensus 453 g-a~s~~w~Qi~ADvl------g~pV~~~~~~e-~~alGaA~lA 488 (541)
T TIGR01315 453 Q-CQNPLLMQLIADAC------DMPVLIPYVNE-AVLHGAAMLG 488 (541)
T ss_pred c-ccCHHHHHHHHHHH------CCeeEecChhH-HHHHHHHHHH
Confidence 6 55787888887554 23333445444 7899998865
No 77
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=58.57 E-value=79 Score=31.55 Aligned_cols=150 Identities=15% Similarity=0.053 Sum_probs=88.5
Q ss_pred CeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCC
Q psy11663 41 PYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGL 120 (297)
Q Consensus 41 PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL 120 (297)
+-+++|||-=.-|-.+...+.-..---|+=|=.-+=..++.+++ ..||+==++|++|... . -++++.-..+|=+..-
T Consensus 160 ~~~~lNiGGIaNiT~l~~~~~~~~afDtGPgN~liD~~~~~~~~-~~~D~~G~~A~~G~v~-~-~lL~~ll~~pff~~~p 236 (365)
T PRK09585 160 TRAVLNIGGIANITLLPPGGGPVIGFDTGPGNALIDAWIQRHGG-KPYDKDGAWAASGKVD-E-ALLARLLAHPYFALPP 236 (365)
T ss_pred ceEEEecCCceEEEEecCCCCCeeEecCChhHHHHHHHHHHHhC-CCCCCCChHHhCCCCC-H-HHHHHHhcCccccCCC
Confidence 45899999432233332221111222333444444467777777 5899988999999752 2 2344444444433333
Q ss_pred CccccccccccccccC-CccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHh
Q psy11663 121 PGDLIASSFGRVCKQD-TMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSI 196 (297)
Q Consensus 121 ~~d~~ASsFGK~~~~~-~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av 196 (297)
|+++===.||-.--++ -..-+.++||+.+.|....+.+|.+--.... ...++|+.+|.= +.||.+|+.|+...
T Consensus 237 PKStgrE~F~~~~~~~~l~~~~~s~~D~~aTlt~~TA~sI~~~~~~~~--~~~~~vlv~GGG-a~N~~Lm~~L~~~l 310 (365)
T PRK09585 237 PKSTGRELFNLAWLERQLAGFGLSPEDVQATLTELTAASIARAVRRLP--PGPDELLVCGGG-ARNPTLMERLAALL 310 (365)
T ss_pred CCccChhhcCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcc--CCCCEEEEECCC-cchHHHHHHHHHhc
Confidence 4444223343211100 0111368999999999999999988763322 345689998877 45899999998654
No 78
>PRK09698 D-allose kinase; Provisional
Probab=55.96 E-value=65 Score=29.87 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhh-----ccCCceEEEeccCCchhhHHHHHhh
Q psy11663 152 LFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYW-----SKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 152 l~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fw-----s~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
+..+...+++.........+.+.||+.|......+...+.+...++=+ .....+..+-..++..+++||.+..
T Consensus 217 ~~~~~~~la~~l~~li~~ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~ 294 (302)
T PRK09698 217 IQSLLENLARAIATSINLFDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILA 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHH
Confidence 344455566655556678899999999987766555455554344321 2334666777788899999998764
No 79
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=53.35 E-value=98 Score=33.06 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=35.2
Q ss_pred HcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhc
Q psy11663 169 MHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGA 225 (297)
Q Consensus 169 ~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~ 225 (297)
...++.|+++|.--| -|.+.+.++..+ .+ ++.-.-++.-.-|+||.+...
T Consensus 351 ~~dId~VvLVGGssr-iP~V~~~l~~~f---g~---~~~~~~nPdeaVA~GAAi~a~ 400 (657)
T PTZ00186 351 LKEINDVVLVGGMTR-MPKVVEEVKKFF---QK---DPFRGVNPDEAVALGAATLGG 400 (657)
T ss_pred hhhCCEEEEECCccc-ChHHHHHHHHHh---CC---CccccCCCchHHHHhHHHHHH
Confidence 356889999998855 577777776433 22 223345788999999998764
No 80
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=52.98 E-value=91 Score=29.00 Aligned_cols=79 Identities=11% Similarity=-0.015 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhh-h-hc-cCCceEEEeccCCchhhHHHH
Q psy11663 145 ADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIK-Y-WS-KGAVQSLFLRHEGYLGAIGAF 221 (297)
Q Consensus 145 eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~-f-ws-~g~~~a~Fl~h~gY~GAlg~~ 221 (297)
+..|+.++.-.+..+|+.........+-+.||..|.... .+..++.+...++ . +. ....+...-+.+...+++||.
T Consensus 219 d~~a~~~~~~~~~~la~~l~n~~~~ldP~~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa 297 (303)
T PRK13310 219 DEQAVAHVERYLDLLAICLGNILTIVDPHLVVLGGGLSN-FDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAA 297 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC-hHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHH
Confidence 457788999999999999999999999999999998765 4555566654443 1 11 123455566778889999998
Q ss_pred Hhh
Q psy11663 222 LRG 224 (297)
Q Consensus 222 l~~ 224 (297)
...
T Consensus 298 ~~~ 300 (303)
T PRK13310 298 FLH 300 (303)
T ss_pred HHh
Confidence 753
No 81
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=50.11 E-value=2.7e+02 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCCceEEEEEecCCceEEecccccChhhH
Q psy11663 38 NIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTF 75 (297)
Q Consensus 38 ~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~ 75 (297)
.....++|+||.||+=+-+-.++...+..--++||-.+
T Consensus 202 ~~~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~i 239 (420)
T PRK09472 202 RELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVV 239 (420)
T ss_pred hhcCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHH
Confidence 34578999999999876666677767777777777654
No 82
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=47.43 E-value=60 Score=34.37 Aligned_cols=52 Identities=17% Similarity=0.017 Sum_probs=35.2
Q ss_pred HcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 169 MHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 169 ~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
...++.|+++|..-| -|.+.+.|+..+ +..++.---++.-+-|+||.+....
T Consensus 330 ~~~i~~ViLvGGssr-iP~v~~~i~~~f-----~~~~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 330 KRSVHEVVLVGGSTR-IPKVQSLIKDFF-----NGKEPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHCcEEEEECCCCC-ChhHHHHHHHHh-----CCCCCCCCCCcchHHhhhhhhhHHH
Confidence 356899999998855 577777777444 2222223346778999999987643
No 83
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=47.16 E-value=92 Score=32.65 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=35.6
Q ss_pred cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 170 HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 170 ~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
..++.|+++|..-| -|.+.+.++..+ .. ++.-.-++.-+-|.||.+.+..
T Consensus 325 ~~id~ViLvGGssr-iP~v~~~l~~~f---g~---~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 325 SDIDEVILVGGSTR-MPAVQELVKEFF---GK---EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred hhCcEEEEECCcCC-ChHHHHHHHHHh---CC---CCCcCcCChHHHHHhHHHHHHH
Confidence 46889999999855 587887777543 11 2233456788999999997654
No 84
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=46.97 E-value=70 Score=34.00 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=34.6
Q ss_pred cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 170 HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 170 ~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
..++.|+.+|..-| -|.+.+.++..+ .. ++.-.-++.-.-|.||.+....
T Consensus 366 ~~i~~ViLvGGssr-iP~v~~~l~~~f----~~--~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 366 DELNDVILVGGMTR-MPKVSETVKKIF----GK--EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHCcEEEEECCccC-ChHHHHHHHHHh----CC--CcccCCCCccceeeccHHHHHh
Confidence 45799999998855 587777776543 11 2223356788999999987643
No 85
>PRK13411 molecular chaperone DnaK; Provisional
Probab=46.25 E-value=3.2e+02 Score=29.03 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=34.7
Q ss_pred CCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 171 KLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 171 ~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
.++.|+++|..-| -|.+.+.++..+ +..++.-.-++.-+-|.||.+...-
T Consensus 327 ~id~ViLvGGssr-iP~v~~~l~~~f-----~~~~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 327 DIDRVILVGGSTR-IPAVQEAIQKFF-----GGKQPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred HCcEEEEECCCCC-cchHHHHHHHHc-----CCcCcCCCCCchHHHHHHHHHHHHh
Confidence 4789999998855 587777777543 2222333356778999999998643
No 86
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=42.10 E-value=36 Score=29.60 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCch
Q psy11663 160 GQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYL 215 (297)
Q Consensus 160 gqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~ 215 (297)
||++..-.+..++++|+.+-+-+.++|+....+.-|. +..++..|+.-+...
T Consensus 14 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~lkma~----P~gvk~~i~sve~a~ 65 (151)
T TIGR00854 14 GQVGTTWTKVAGANRIIVVNDDVANDEVRQTLMGIVA----PTGFKVRFVSLEKTI 65 (151)
T ss_pred hHhhhhhhcccCCCEEEEEcccccCCHHHHHHHHhhC----CCCCEEEEEEHHHHH
Confidence 8999999999999999999999999997777777776 778888887666543
No 87
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=42.05 E-value=3.1e+02 Score=26.04 Aligned_cols=76 Identities=12% Similarity=-0.075 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCc-EEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccC
Q psy11663 141 QCSEADLARSLLFAISNDIGQIASLYAMMH-------KLK-KVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHE 212 (297)
Q Consensus 141 ~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~-------~ik-~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~ 212 (297)
.++++|+...+-..+. .|-+...-.-+.. .++ .|+.+|.- ..-|-.-+.++..+. ++..-..|+
T Consensus 238 ~i~~~~~~eii~~~~~-~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~-s~ipgi~e~l~~~~~------~~v~~~~~P 309 (336)
T PRK13928 238 TVTSEEIREALKEPVS-AIVQAVKSVLERTPPELSADIIDRGIIMTGGG-ALLHGLDKLLAEETK------VPVYIAEDP 309 (336)
T ss_pred EECHHHHHHHHHHHHH-HHHHHHHHHHHhCCccccHhhcCCCEEEECcc-cchhhHHHHHHHHHC------CCceecCCH
Confidence 4566777644444333 3333222222222 244 69999876 334555566665442 233445689
Q ss_pred CchhhHHHHHhh
Q psy11663 213 GYLGAIGAFLRG 224 (297)
Q Consensus 213 gY~GAlg~~l~~ 224 (297)
...-|+||.+..
T Consensus 310 ~~ava~Gaa~~~ 321 (336)
T PRK13928 310 ISCVALGTGKML 321 (336)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 88
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=41.48 E-value=28 Score=30.20 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCC
Q psy11663 160 GQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEG 213 (297)
Q Consensus 160 gqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~g 213 (297)
||++..-++..++++|+.+-+-+.++|+....+.-|+ +.+++..|+.=+.
T Consensus 14 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~l~ma~----P~gvk~~i~sv~~ 63 (151)
T PF03830_consen 14 GQVATAWVKKLNANRIIVVDDEVANDPFQKMILKMAA----PAGVKLSIFSVEE 63 (151)
T ss_dssp TTHHHHHHHHHTTSEEEEE-HHHHHSHHHHHHHHHTS----HTTSEEEEE-HHH
T ss_pred eeeeEEEhhhcccCEEEEECHHHhcCHHHHHHHHHhh----cCCCceEEEEHHH
Confidence 7899999999999999999999999998888888777 7788887765553
No 89
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=39.52 E-value=40 Score=30.13 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEeccccc
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTAT 70 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~I 70 (297)
..|++||.+||-+.+=.|+.++ +++||..+
T Consensus 119 ~~~~lViD~GTA~Tid~v~~~g--~~~GG~I~ 148 (206)
T PF03309_consen 119 GQPCLVIDAGTATTIDVVDADG--QHLGGAIL 148 (206)
T ss_dssp TSSEEEEEESSEEEEEEEETTS--EEEEEEEE
T ss_pred CCCEEEEEcCCeEEEEEEcCCC--eEEEEEEC
Confidence 4799999999999999999765 57888754
No 90
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=38.40 E-value=1.5e+02 Score=30.02 Aligned_cols=125 Identities=10% Similarity=0.026 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCCCCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11663 84 KAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIA 163 (297)
Q Consensus 84 ~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA 163 (297)
+..+++++.++|++-. ..+-++ +-+|... --|+++-++=||--..- ......++.|++|+++.-|++.+-+.-
T Consensus 293 ~~~~~~~l~~~a~~~~--g~~gli-~p~ger~---~~~~~arg~~~gl~~~~-G~~~~~~~~~l~RAvlEgva~~~r~~l 365 (471)
T PRK10640 293 QITDLPALIAATAALP--ACRFLI-NPNDDRF---INPPSMCSEIQAACRET-AQPVPESDAELARCIFDSLALLYADVL 365 (471)
T ss_pred ccCCHHHHHHHHHhCC--CCCcee-CCCcccc---cCchhhHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3457889988886532 223333 2222221 11123333333322100 011234899999999999999987776
Q ss_pred HHHHHH--cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhh
Q psy11663 164 SLYAMM--HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRG 224 (297)
Q Consensus 164 ~l~A~~--~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~ 224 (297)
-...+. ..+++|+.+|.- ..++..++.++-+. ...+. +.+.-.+|+||.+..
T Consensus 366 ~~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvl----g~pV~----~~~~ea~alGaa~~a 419 (471)
T PRK10640 366 HELAQLRGEPFSQLHIVGGG-CQNALLNQLCADAC----GIRVI----AGPVEASTLGNIGIQ 419 (471)
T ss_pred HHHHHHhCCCcceEEEECCh-hhhHHHHHHHHHHh----CCCee----eCChhHHHHHHHHHH
Confidence 655543 347899999987 44677888888666 33332 222247889998854
No 91
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=37.33 E-value=1.9e+02 Score=28.83 Aligned_cols=75 Identities=13% Similarity=-0.029 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhH
Q psy11663 141 QCSEADLARSLLFAISNDIGQIASLYAM--MHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAI 218 (297)
Q Consensus 141 ~~s~eDia~SLl~Mv~~nIgqlA~l~A~--~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAl 218 (297)
..+++|++|+++.-|++..-+.--..-+ ...+++|+.+|.-- .++..|+.++... ...+. .-+.-.+|+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga-~s~~w~Qi~ADvl----g~pV~----~~~~e~~a~ 425 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGS-QNAFLNQLCADAC----GIRVI----AGPVEASTL 425 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChh-hhHHHHHHHHHHh----CCceE----cCCchHHHH
Confidence 4589999999999999988766555543 34578999999874 4677888888766 33332 122337899
Q ss_pred HHHHhh
Q psy11663 219 GAFLRG 224 (297)
Q Consensus 219 g~~l~~ 224 (297)
||.+..
T Consensus 426 GaA~~a 431 (454)
T TIGR02627 426 GNIGVQ 431 (454)
T ss_pred HHHHHH
Confidence 988764
No 92
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=36.57 E-value=48 Score=29.03 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchh
Q psy11663 160 GQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLG 216 (297)
Q Consensus 160 gqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~G 216 (297)
||++..-.+..++++|+.+-.-+.++|+..+.+.-|. +.+++..+..-+....
T Consensus 16 GQV~~~W~~~~~~~~IvVvdD~~A~D~~~k~~l~ma~----P~gvk~~i~sv~~a~~ 68 (157)
T PRK11425 16 GQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVL----AEGIAVRFWTLQKVID 68 (157)
T ss_pred HHhhhhhhcccCCCEEEEEcchhcCCHHHHHHHHhhC----CCCCeEEEEEHHHHHH
Confidence 8999999999999999999999999998777777777 7888888877765443
No 93
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=35.06 E-value=54 Score=28.48 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCc
Q psy11663 160 GQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGY 214 (297)
Q Consensus 160 gqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY 214 (297)
||.+..-.+..++++|+.+-+-+.++|+..+.+.-|. +.+++..++.-+..
T Consensus 13 GQV~~~W~~~~~~~~IvVvdD~~A~D~~~k~~l~ma~----P~gvk~~i~sve~a 63 (151)
T cd00001 13 GQVATTWTKELNANRIIVVNDEVANDELRKTLLKLAA----PPGVKLRIFTVEKA 63 (151)
T ss_pred hHhhhhhhcccCCCEEEEEcccccCCHHHHHHHHhhC----CCCCeEEEEEHHHH
Confidence 8999999999999999999999999997777777776 77888888766643
No 94
>PLN03184 chloroplast Hsp70; Provisional
Probab=34.96 E-value=3e+02 Score=29.41 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=35.4
Q ss_pred cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 170 HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 170 ~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
..++.|+.+|..-| -|.+.+.++..+ .. ++..--++.-+-|+||.+....
T Consensus 364 ~dId~ViLvGGssr-iP~V~~~i~~~f----g~--~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 364 KDIDEVILVGGSTR-IPAVQELVKKLT----GK--DPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred hHccEEEEECCccc-cHHHHHHHHHHh----CC--CcccccCcchHHHHHHHHHHHH
Confidence 56899999998855 577777776443 11 2333457888999999997653
No 95
>PRK12408 glucokinase; Provisional
Probab=34.15 E-value=1.3e+02 Score=29.00 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcE-EEEecccccc-chhcHHH--HHHHhh-h-h--ccCCceEEEeccCCchh
Q psy11663 145 ADLARSLLFAISNDIGQIASLYAMMHKLKK-VYFGGYFLRN-HPLSMHT--ISFSIK-Y-W--SKGAVQSLFLRHEGYLG 216 (297)
Q Consensus 145 eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~-Ivf~G~fi~~-~~~~m~~--l~~av~-f-w--s~g~~~a~Fl~h~gY~G 216 (297)
+..|+.++......+++...-.+...+-+. ||+.|..... .+..++. +...++ + | ....+.....+++ ..|
T Consensus 245 D~~A~~~~~~~~~~La~~i~nl~~~ldPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~-~ag 323 (336)
T PRK12408 245 DALAHEALQVFCGFLGSVVGDMALAYGARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHG-QLG 323 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCC-ChH
Confidence 467888999999999999999999999999 9999977543 3433332 322111 1 1 1234555666666 689
Q ss_pred hHHHHH
Q psy11663 217 AIGAFL 222 (297)
Q Consensus 217 Alg~~l 222 (297)
.+||..
T Consensus 324 l~GAa~ 329 (336)
T PRK12408 324 VLGAAS 329 (336)
T ss_pred HHHHHH
Confidence 999863
No 96
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=32.51 E-value=35 Score=33.61 Aligned_cols=62 Identities=27% Similarity=0.503 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCc-eEEEEEecCCceEEecccc-----cChhhHHH-HHHhh--------------------cCCCCHHH
Q psy11663 38 NIFPYLLVNIGSG-VSIMKVESDSKVERIGGTA-----TGGGTFWG-LGSLL--------------------TKAKGFDE 90 (297)
Q Consensus 38 ~~~PyLlVNIGSG-vSi~kV~~~~~~~RIgGS~-----IGGGT~~G-L~~LL--------------------t~~~~fde 90 (297)
....||+|-||-+ ||++.|-+.....-+|||. +|||.+=| |+.+| .|.++++|
T Consensus 161 ~k~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~~~~fsK~~lf~gGa~~i~gv~sp~e 240 (374)
T COG2441 161 EKVNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANYLERFSKSLLFEGGAAYIAGVDSPEE 240 (374)
T ss_pred hhhhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHhhhhccHhheecccccccccCCCHHH
Confidence 4467899999998 8999998887777888865 78877655 22222 25667777
Q ss_pred HHHHHhcCC
Q psy11663 91 LLELAEKGD 99 (297)
Q Consensus 91 il~lA~~Gd 99 (297)
+.++|+.+.
T Consensus 241 f~~~ake~e 249 (374)
T COG2441 241 FVKLAKEDE 249 (374)
T ss_pred HHHHhhccc
Confidence 777777654
No 97
>PRK13410 molecular chaperone DnaK; Provisional
Probab=30.80 E-value=2.5e+02 Score=30.05 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=34.6
Q ss_pred cCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCchhhHHHHHhhcc
Q psy11663 170 HKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226 (297)
Q Consensus 170 ~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY~GAlg~~l~~~~ 226 (297)
..++.|+.+|..-| -|.+.+.++..+ .+ ++.---++.-+-|+||.+....
T Consensus 327 ~dId~VvLVGGssR-iP~V~~~l~~~f---g~---~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 327 EDIDEVVLVGGSTR-MPMVQQLVRTLI---PR---EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred hhCcEEEEECCccc-cHHHHHHHHHHc---CC---CcccCCCCchHHHHhHHHHHHh
Confidence 46789999998855 587777776433 21 2233346788999999987644
No 98
>PRK00292 glk glucokinase; Provisional
Probab=28.07 E-value=2.1e+02 Score=26.87 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEeccccc-cchhcHH-HHHHHhh--h-hccC-CceEEEeccCCchhhH
Q psy11663 146 DLARSLLFAISNDIGQIASLYAMMHKLK-KVYFGGYFLR-NHPLSMH-TISFSIK--Y-WSKG-AVQSLFLRHEGYLGAI 218 (297)
Q Consensus 146 Dia~SLl~Mv~~nIgqlA~l~A~~~~ik-~Ivf~G~fi~-~~~~~m~-~l~~av~--f-ws~g-~~~a~Fl~h~gY~GAl 218 (297)
.+|+.++......+|....-.+...+.+ .||+.|..+. ..+...+ .+...+. . ++.- +-.+.++..++-.|-+
T Consensus 228 ~~A~~~~~~~~~~lg~~i~~l~~~~~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~ 307 (316)
T PRK00292 228 PLCRRTLSLFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLL 307 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHH
Confidence 5788899999999999999999999999 9999998874 3333333 2222221 1 1101 2233456677799999
Q ss_pred HHHHh
Q psy11663 219 GAFLR 223 (297)
Q Consensus 219 g~~l~ 223 (297)
||...
T Consensus 308 GAa~~ 312 (316)
T PRK00292 308 GAGAY 312 (316)
T ss_pred HHHHH
Confidence 99653
No 99
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.65 E-value=1.3e+02 Score=30.23 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCceEEEEEecCCceEEecccccChhhH-HHHH-HhhcCCCCHHHHHHHHhcCCCC--CCceeeccccCC
Q psy11663 38 NIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTF-WGLG-SLLTKAKGFDELLELAEKGDHR--HADMLVRDIYGG 113 (297)
Q Consensus 38 ~~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~-~GL~-~LLt~~~~fdeil~lA~~Gd~~--~vDllV~DIYg~ 113 (297)
+..|-.++||| |+|-+-+-.++. -|.|=--|=|.+ +=+. ..+++ +.||+=-+.|+.|+.. .++-++.|=|=.
T Consensus 161 ~~~~r~vlNiG-GIaNlt~l~~~~--~v~g~DtGPgN~llD~wi~~~~g-~~yD~~g~~A~~G~v~~~ll~~ll~~p~F~ 236 (371)
T COG2377 161 PRERRAVLNIG-GIANLTYLPPGG--PVLGFDTGPGNMLLDAWIQAHGG-KPYDKDGAWAASGKVDEALLARLLAHPYFA 236 (371)
T ss_pred CCCCeEEEecc-ceEEEEecCCCC--ceeeeecCCcchHHHHHHHHhhC-CCcCcCcchhhcCCcCHHHHHHHhhCCccc
Confidence 34788999999 677666666654 466655554432 3332 23334 7888877888888643 233344443321
Q ss_pred CCCCCCCCccccccccccccccCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHH
Q psy11663 114 DYKCLGLPGDLIASSFGRVCKQDTMEGQ---CSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMH 190 (297)
Q Consensus 114 ~~~~~gL~~d~~ASsFGK~~~~~~~~~~---~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~ 190 (297)
.+ -|+++==--|+-.- -++..++ .+.||+.+.|....+.+|..-.- -..+..++.+.+|.= +.||.+|+
T Consensus 237 ~~----~PkStgRe~F~~~w-l~~~~~~~~~l~a~Dv~aTL~eltA~tIv~s~~--~~~~~p~~l~vcGGG-~~N~llm~ 308 (371)
T COG2377 237 LP----APKSTGRELFNLQW-LEQHLDDTQLLNAEDVQATLVELTAATIVKSVA--TLQGDPRRLVVCGGG-RRNPLLMA 308 (371)
T ss_pred CC----CcccCCccccchhh-HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHh--hccCCCceeEeecCC-ccCHHHHH
Confidence 11 12222111121100 0001122 89999999999999999876554 457889999999988 55799999
Q ss_pred HHHHHh
Q psy11663 191 TISFSI 196 (297)
Q Consensus 191 ~l~~av 196 (297)
.++.-.
T Consensus 309 rLa~l~ 314 (371)
T COG2377 309 RLAALL 314 (371)
T ss_pred HHHHhc
Confidence 998543
No 100
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=27.32 E-value=95 Score=32.86 Aligned_cols=148 Identities=20% Similarity=0.135 Sum_probs=87.7
Q ss_pred ChhhHHHHHHhhcCCC-CHHH--HHHHHhcCCCCCCce-eeccccCC-------CCCCCCCCccccccc-ccccccc-CC
Q psy11663 71 GGGTFWGLGSLLTKAK-GFDE--LLELAEKGDHRHADM-LVRDIYGG-------DYKCLGLPGDLIASS-FGRVCKQ-DT 137 (297)
Q Consensus 71 GGGT~~GL~~LLt~~~-~fde--il~lA~~Gd~~~vDl-lV~DIYg~-------~~~~~gL~~d~~ASs-FGK~~~~-~~ 137 (297)
.=|-|.+....++|.+ +.+| ++.||.-|+.+ .|. ++.++... +.....--..+...| ++...++ +.
T Consensus 173 SLG~fY~~~T~~lGf~~n~~EgKvMgLAaYG~p~-y~~~~~d~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~ 251 (555)
T COG2192 173 SLGLFYAAFTELLGFKPNSDEGKVMGLAAYGDPN-YDLSLLDLLREKEDGLFVINGELLKRLARLGTFSLLGALKRRLPE 251 (555)
T ss_pred hHHHHHHHHHHHhCCCCCCCCccEEEeeccCCcc-cchHHHHHHhhccccceeccHHHHHhccccceecccccccccccc
Confidence 4467888888899876 5554 78899999987 444 34334431 100000112222333 4543322 12
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEec--cCCch
Q psy11663 138 MEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLR--HEGYL 215 (297)
Q Consensus 138 ~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~--h~gY~ 215 (297)
....-...|+|+|+-...-..+-.++--+-+..+..++.+.|.---|-...-+.+.. +..+-+|+. =+.==
T Consensus 252 ~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g~~~L~~AGGVAlNv~~N~~~l~~-------~~f~dlfV~Pa~gD~G 324 (555)
T COG2192 252 SPSTERAADIAASAQAYLEELVLEMLRYLREETGEDNLALAGGVALNVKANGKLLRR-------GLFEDLFVQPAMGDAG 324 (555)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceEEccceeeeeeehHhHhhc-------ccCceeEecCCCCCcc
Confidence 344567899999988877777777777777777899999999876654433334432 222233332 23344
Q ss_pred hhHHHHHhhcc
Q psy11663 216 GAIGAFLRGAE 226 (297)
Q Consensus 216 GAlg~~l~~~~ 226 (297)
+|+||.|....
T Consensus 325 ~AvGAAl~~~~ 335 (555)
T COG2192 325 LAVGAALAVKR 335 (555)
T ss_pred hHHHHHHHHHH
Confidence 78999886544
No 101
>PRK13320 pantothenate kinase; Reviewed
Probab=25.49 E-value=1.1e+02 Score=28.43 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCL 118 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~ 118 (297)
..|.+||.+||-+.+=.|+.++ ++.||..+=|=. +.+-.|. +-+.+ ...++..
T Consensus 113 ~~~~lVID~GTA~Tid~v~~~g--~~~GG~I~PG~~-l~~~aL~----------~~Ta~--Lp~~~~~------------ 165 (244)
T PRK13320 113 GKNVLAIDAGTAITYDVLDSEG--VYLGGLISPGLE-MRFKALH----------EFTAR--LPLVTIE------------ 165 (244)
T ss_pred CCCEEEEEcCCceEEEEEcCCC--cEEEEEEchhHH-HHHHHHH----------Hhhcc--CCcCccC------------
Confidence 3589999999999999998865 477777554322 2221121 11111 1111110
Q ss_pred CCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q psy11663 119 GLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYF 181 (297)
Q Consensus 119 gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~f 181 (297)
-|. ..+| .-+++-+..+++.+...-|-.+.-...+..+--+|+.+|..
T Consensus 166 -~~~----~~~g----------~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~vi~TGG~ 213 (244)
T PRK13320 166 -GPI----PLIG----------RSTEECIRSGVVWGCVAEIEGLIEAYKSKLPELLVILTGGD 213 (244)
T ss_pred -CCC----CcCC----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 000 1122 33567777777777776665555555555563478888865
No 102
>PRK13318 pantothenate kinase; Reviewed
Probab=24.91 E-value=5.5e+02 Score=23.61 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=23.7
Q ss_pred CeEEEEcCCceEEEEEecCCceEEeccccc
Q psy11663 41 PYLLVNIGSGVSIMKVESDSKVERIGGTAT 70 (297)
Q Consensus 41 PyLlVNIGSGvSi~kV~~~~~~~RIgGS~I 70 (297)
|.++|.+||+|.+=.|+.++ ++.||..+
T Consensus 125 ~~ivid~GTA~t~d~v~~~g--~~~GG~I~ 152 (258)
T PRK13318 125 PLIVVDFGTATTFDVVSAKG--EYLGGVIA 152 (258)
T ss_pred CEEEEEcCCceEEEEEcCCC--cEEEEEEC
Confidence 89999999999999998876 46677654
No 103
>PF13289 SIR2_2: SIR2-like domain
Probab=23.41 E-value=3.8e+02 Score=21.31 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhcc
Q psy11663 142 CSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSK 201 (297)
Q Consensus 142 ~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~ 201 (297)
.+++|..+.+ ..+--....+. ....-+.++|+|.-+. .+..+..+..+.+....
T Consensus 61 lt~~~y~~~~----~~~~~~~~~l~-~~l~~~~~lfiGys~~-D~~i~~~l~~~~~~~~~ 114 (143)
T PF13289_consen 61 LTEDDYEEYY----SSNPWFPNFLR-SLLRSKTLLFIGYSFN-DPDIRQLLRSALENSGK 114 (143)
T ss_pred EcHHHHHHHh----hhHHHHHHHHH-HHHcCCCEEEEEECCC-CHHHHHHHHHHHHhccC
Confidence 5666765555 11222222333 4447789999998866 45667777766655444
No 104
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=22.74 E-value=1.5e+02 Score=28.90 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccchhcHHHHHHHhhhhccCCceEEEeccCCc
Q psy11663 160 GQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGY 214 (297)
Q Consensus 160 gqlA~l~A~~~~ik~Ivf~G~fi~~~~~~m~~l~~av~fws~g~~~a~Fl~h~gY 214 (297)
||++..-.+..++++|+.+-+-+.++|+..+.+.-|. +..++..++.-+..
T Consensus 177 GQV~~~W~~~~~~~~IiVvdD~vA~D~~~k~~lk~A~----P~gvk~~i~sv~~a 227 (322)
T PRK15088 177 GQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVA----PPGVTAHVVDVAKM 227 (322)
T ss_pred HHHHHHHhhccCCCEEEEeCccccCCHHHHHHHHhcC----CCCCeEEEEEHHHH
Confidence 8999999999999999999999999998777777777 77888877666543
No 105
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=22.36 E-value=48 Score=25.89 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=13.5
Q ss_pred chhHHHHHHHhhhccc
Q psy11663 236 PLSMHTISFSIKYWSK 251 (297)
Q Consensus 236 ~~~~~~ls~a~~~ws~ 251 (297)
+++...|..|||||-.
T Consensus 3 ~i~I~dIE~AIN~WR~ 18 (71)
T PF12512_consen 3 DISITDIEAAINYWRA 18 (71)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 4778899999999954
No 106
>PRK13322 pantothenate kinase; Reviewed
Probab=21.28 E-value=1.1e+02 Score=28.44 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccChhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCceeeccccCCCCCCC
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCL 118 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGGGT~~GL~~LLt~~~~fdeil~lA~~Gd~~~vDllV~DIYg~~~~~~ 118 (297)
..|.|||.+||-+.+=.|+.++ +++||..+=| .-+.+-.|..+ +.+ ...+|+.
T Consensus 115 ~~~~lViD~GTA~TiD~v~~~g--~~~GG~I~PG-~~l~~~aL~~~----------Ta~--Lp~v~~~------------ 167 (246)
T PRK13322 115 KNACLVIDCGTAVTIDLVDADG--QHLGGYICPG-LYLMRDALRTH----------TRR--IRYDDGT------------ 167 (246)
T ss_pred CCCEEEEEcCCeeEEEEEcCCC--cEeeeEEccC-HHHHHHHHHhh----------hhc--CCCCccc------------
Confidence 3479999999999999998765 5777765443 22222222222 111 0111100
Q ss_pred CCCccccccccccccccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEeccc
Q psy11663 119 GLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHK-LKKVYFGGYF 181 (297)
Q Consensus 119 gL~~d~~ASsFGK~~~~~~~~~~~s~eDia~SLl~Mv~~nIgqlA~l~A~~~~-ik~Ivf~G~f 181 (297)
.|. ..+| .-+.+-+..+++.+...-|-.+.-...+..+ --+|+.+|..
T Consensus 168 -~~~----~~~g----------~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~vilTGG~ 216 (246)
T PRK13322 168 -ADS----LSPG----------RNTVDAVERGCLLMLRGFIESQLEQARELWGPDFEIFLTGGD 216 (246)
T ss_pred -CCC----CCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 111 1122 2356778888888877777766666555554 2378888855
No 107
>PRK13324 pantothenate kinase; Reviewed
Probab=21.07 E-value=1.3e+02 Score=28.30 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCceEEEEEecCCceEEecccccCh
Q psy11663 39 IFPYLLVNIGSGVSIMKVESDSKVERIGGTATGG 72 (297)
Q Consensus 39 ~~PyLlVNIGSGvSi~kV~~~~~~~RIgGS~IGG 72 (297)
..|.+||.+||-|.+=.|+.++ +++||..+=|
T Consensus 123 ~~~~iViD~GTA~T~d~v~~~g--~~~GG~I~PG 154 (258)
T PRK13324 123 NKDLLIIDLGTATTFDLVTKDK--KYLSGSIMPG 154 (258)
T ss_pred CCCEEEEEcCCceEEEEEcCCC--eEEEEEECcc
Confidence 3589999999999999998865 5778776543
Done!