RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11663
(297 letters)
>gnl|CDD|217646 pfam03630, Fumble, Fumble. Fumble is required for cell division in
Drosophila. Mutants lacking fumble exhibit abnormalities
in bipolar spindle organisation, chromosome segregation,
and contractile ring formation. Analyses have
demonstrated that encodes three protein isoforms, all of
which contain a domain with high similarity to the
pantothenate kinases of A. nidulans and mouse. A role of
fumble in membrane synthesis has been proposed.
Length = 329
Score = 337 bits (866), Expect = e-116
Identities = 132/227 (58%), Positives = 170/227 (74%), Gaps = 2/227 (0%)
Query: 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYD--FQLAEPNIFPYLLVNIGSGVSIMKVES 58
M+CLIQG NFLL+NI E F Y+ + E Q+ +++PYLLVNIGSGVSI+KV+
Sbjct: 103 MDCLIQGLNFLLKNIPAECFTYSNDTDGEKTEFQQINNDDLYPYLLVNIGSGVSILKVDG 162
Query: 59 DSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCL 118
+ ER+GG++ GGGTF GLGSLLT FDELL++A+KGD+ + DMLVRDIYGGDY
Sbjct: 163 PDQFERVGGSSLGGGTFLGLGSLLTGCTSFDELLDMAQKGDNSNVDMLVRDIYGGDYSKF 222
Query: 119 GLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFG 178
GL GDLIASSFG+V ++ S D+ARSLL ISN+IGQIA L A+ LK++YFG
Sbjct: 223 GLKGDLIASSFGKVFRELKRLEDFSPEDIARSLLRMISNNIGQIAYLCALRFNLKRIYFG 282
Query: 179 GYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGA 225
G F+RN+P++M T+S++I YWSKG +++ FLRHEGYLGA+GAFL G
Sbjct: 283 GSFIRNNPITMKTLSYAINYWSKGELKAYFLRHEGYLGALGAFLSGK 329
>gnl|CDD|233021 TIGR00555, panK_eukar, pantothenate kinase,
eukaryotic/staphyloccocal type. This model describes a
eukaryotic form of pantothenate kinase, characterized
from the fungus Aspergillus nidulans and with similar
forms known in several other eukaryotes. It also
includes forms from several Gram-positive bacteria
suggested to have originated from the eukaryotic form by
lateral transfer. It differs in a number of biochemical
properties (such as inhibition by acetyl-CoA) from most
bacterial CoaA and lacks sequence similarity. This
enzyme is the key regulatory step in the biosynthesis of
coenzyme A (CoA) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Pantothenate and coenzyme A].
Length = 296
Score = 259 bits (663), Expect = 6e-86
Identities = 108/222 (48%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPNIFPYLLVNIGSGVSIMKVESDS 60
+ LIQG N+LL+ E F Y + + +I+PYLLVNIG+G SI+ V+ D+
Sbjct: 81 FDALIQGLNYLLKEEPKEKFTYY-DFECQKK-PIDLDDIYPYLLVNIGTGTSILYVDGDN 138
Query: 61 KVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGL 120
ER+GGT+ GGGTF GLG LLT + FDELLE+A+ GD + D+LV DIYGGDY GL
Sbjct: 139 Y-ERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGL 197
Query: 121 PGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGY 180
G L ASSFG+ ++ S D+A SLL I N+IGQIA L A+ + + ++ F G
Sbjct: 198 DGSLTASSFGK-VLSKHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGS 256
Query: 181 FLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222
FLRN+ L M +S++ +WSK ++LFL HEGY GAIGA L
Sbjct: 257 FLRNNQLLMKVLSYATNFWSK---KALFLEHEGYSGAIGALL 295
>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase.
Length = 876
Score = 273 bits (699), Expect = 2e-85
Identities = 123/238 (51%), Positives = 166/238 (69%), Gaps = 3/238 (1%)
Query: 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPNIFPYLLVNIGSGVSIMKVESDS 60
M+CL+ G NFLL+ I EAF + G E+ Q+ + ++FPYLLVNIGSGVS++KV+ D
Sbjct: 177 MDCLVAGANFLLKAIRHEAFTH-MEGEKEF-VQIDQNDLFPYLLVNIGSGVSMIKVDGDG 234
Query: 61 KVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGG-DYKCLG 119
K ER+ GT GGGT+WGLG LLTK K FDELLEL+++GD+ DMLV DIYGG DY +G
Sbjct: 235 KFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIG 294
Query: 120 LPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGG 179
L IASSFG+V ++ D++ SLL IS +IGQI+ L A+ LK+++FGG
Sbjct: 295 LSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGG 354
Query: 180 YFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAECGACQVSYHPL 237
+F+R H +M TISF++ +WSKG Q++FLRHEG+LGA+GAF+ + G + H L
Sbjct: 355 FFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMAHQL 412
>gnl|CDD|215498 PLN02920, PLN02920, pantothenate kinase 1.
Length = 398
Score = 255 bits (653), Expect = 4e-83
Identities = 120/223 (53%), Positives = 160/223 (71%), Gaps = 3/223 (1%)
Query: 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPNIFPYLLVNIGSGVSIMKVESDS 60
M+CL+ G NFLL+ + EAF Y G E+ Q+ +++PYLLVNIGSGVS++KV+ D
Sbjct: 128 MDCLVTGANFLLKAVHHEAFTY-LDGQKEF-VQIDHNDLYPYLLVNIGSGVSMIKVDGDG 185
Query: 61 KVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGG-DYKCLG 119
K ER+ GT+ GGGTFWGLG LLTK K FDELLEL+ +G++R DMLV DIYGG DY +G
Sbjct: 186 KFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKIG 245
Query: 120 LPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGG 179
L IASSFG+ + D+ARSLL ISN+IGQI+ L A+ LK+++FGG
Sbjct: 246 LSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGG 305
Query: 180 YFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFL 222
+F+R H +M TIS ++ +WSKG +++FLRHEG+LGA+GAF+
Sbjct: 306 FFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFM 348
>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme
metabolism].
Length = 342
Score = 239 bits (612), Expect = 8e-78
Identities = 116/229 (50%), Positives = 152/229 (66%), Gaps = 5/229 (2%)
Query: 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEP---NIFPYLLVNIGSGVSIMKVE 57
ME LI G N+ + NI E FV + E L + +++PY+LVNIGSGVSI+KV
Sbjct: 104 MEILINGLNYFVINIPAEVFVEFDAAS-EGLGILLKEQGHDLYPYILVNIGSGVSILKVT 162
Query: 58 SDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKC 117
S+ ER+GG++ GGGT WGL SLLT+A +D++L++A+ GD+ DMLV DIYG DY+
Sbjct: 163 GPSQFERVGGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEE 222
Query: 118 LGLPGDLIASSFGRVCKQ-DTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVY 176
GL DLIASSFG+V D + + +D+ SLL AISN+IGQIA L A + +Y
Sbjct: 223 PGLKSDLIASSFGKVFHHRDKPLEEFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIY 282
Query: 177 FGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGA 225
FGG F RNH L+M T+ ++I WSK + + FL HEGYLGAIGAF GA
Sbjct: 283 FGGSFHRNHLLTMVTLDYAILRWSKPTMNAYFLEHEGYLGAIGAFYLGA 331
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 153 bits (387), Expect = 1e-41
Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 55/273 (20%)
Query: 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPN-----IFPYLLVNIGSGVSIMK 55
M+ +++G N ++R + F + + QL P FP LLVNIGSG+SI+K
Sbjct: 1170 MDAVVKGLNLVIRVAPESIFTVDPSTGVHHPHQLVSPPGDGFSPFPCLLVNIGSGISIIK 1229
Query: 56 -VESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLE---LAEKGDHRHADMLVRDIY 111
+ D R+GG+ GG TFWGL +T ++E++E L GD+++ D+LV DIY
Sbjct: 1230 CLGPDGSHVRVGGSPIGGATFWGLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDLLVGDIY 1289
Query: 112 GGDYKCLGLPG----DLIASSFGRVCKQ---DTMEGQC---------------------- 142
G Y LP D +AS+FG++ + + M G
Sbjct: 1290 G--YNAKDLPAMLSVDTVASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALKSP 1347
Query: 143 ---------------SEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPL 187
S D+ RSLL IS+++ Q+A L++ + + ++F G F+R++P+
Sbjct: 1348 TVISELPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPI 1407
Query: 188 SMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGA 220
IS ++KYWSKG + FL H+GYLGA+G
Sbjct: 1408 IWSHISSTMKYWSKGECHAHFLEHDGYLGALGC 1440
>gnl|CDD|237346 PRK13317, PRK13317, pantothenate kinase; Provisional.
Length = 277
Score = 121 bits (307), Expect = 5e-33
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 10/186 (5%)
Query: 42 YLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHR 101
Y+ NIG+G SI V+ + R+GGT GGGT GL LLT +++L+ELA+ GD
Sbjct: 98 YIFTNIGTGTSIHYVDGN-SQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRN 156
Query: 102 HADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQ 161
+ D+ V DIY G +PGDL AS+FG+V ++ + + +D+ ++ + I
Sbjct: 157 NIDLKVGDIYKGPLP--PIPGDLTASNFGKV--LHHLDSEFTSSDILAGVIGLVGEVITT 212
Query: 162 IASLYAMMHKLK-KVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGA 220
++ A ++ VY G N PL I K + + FL + GY GAIGA
Sbjct: 213 LSIQAAREKNIENIVYIGSTLTNN-PLLQEIIESYTKLRNCTPI---FLENGGYSGAIGA 268
Query: 221 FLRGAE 226
L
Sbjct: 269 LLLATN 274
>gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in DNA
topology by catalysing the concerted breakage and
rejoining of DNA strands during normal cellular growth.
Length = 445
Score = 32.9 bits (76), Expect = 0.18
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 11 LLRNISDEAFVYNRHGNPEYDFQLAEPN----IFPYLLVN----IGSGVS 52
LL +I D + P YD Q EP IFP LLVN I G++
Sbjct: 105 LLPDIDDPTVDFV----PNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMA 150
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA
topoisomerase IV, GyrA, ParC.
Length = 444
Score = 31.8 bits (73), Expect = 0.45
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 11 LLRNISDEAFVYNRHGNPEYDFQLAEPN----IFPYLLVN----IGSGVS 52
LL +I + + P YD Q EP I P LLVN I G++
Sbjct: 125 LLPDIDKDTVDFV----PNYDGQEIEPTVLPPIIPNLLVNGSSGIAVGMA 170
>gnl|CDD|217064 pfam02487, CLN3, CLN3 protein. This is a family of proteins from
the CLN3 gene. A missense mutation of glutamic acid (E)
to lysine (K) at position 295 in the human protein has
been implicated in Juvenile neuronal ceroid
lipofuscinosis (Batten disease).
Length = 409
Score = 31.3 bits (71), Expect = 0.68
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 186 PLSMHTISFSIKYWSKGAVQ--SLFL---RHEGYLGAIGAFLRGAECGACQVSYHPLSMH 240
P +H F + W +Q S FL + G G ++++ L+ H
Sbjct: 75 PFFIHRFPFGFRVWIVILLQASSFFLVAFSKSIAMSLAGVVFASIGSGLGEITFLALTAH 134
Query: 241 TISFSIKYWSKGAVQSLFLRHEGYLGAIGAF 271
I WS G G G IGAF
Sbjct: 135 YPRIVIAGWSSGT---------GGAGLIGAF 156
>gnl|CDD|214779 smart00700, JHBP, Juvenile hormone binding protein domains in
insects. The juvenile hormone exerts pleiotropic
functions during insect life cycles and its binding
proteins regulate these functions.
Length = 224
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 1 MECLIQGCNFLLRNISDEAFVYNRHGNPEYDFQLAEPNIFPYLLVNIGSGV 51
ECL LL + + G PEY +P L ++I SGV
Sbjct: 16 SECLRDAIEALLPQLKN--------GIPEYGIPPLDPLEIDDLKISIDSGV 58
>gnl|CDD|237226 PRK12845, PRK12845, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 564
Score = 30.5 bits (69), Expect = 1.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 50 GVSIMKVESDSKVERIGG-TATGGGTFWGLGSLLTKAKGFDELLELA 95
G+S++ VE K +GG TA GG FW S + G + LE A
Sbjct: 38 GLSVLIVE---KSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERA 81
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 30.3 bits (69), Expect = 1.5
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 11 LLRNISDEAFVYNRHGNPEYDFQLAEPNI----FPYLLVNIGSG 50
LL +I + V P YD EP + FP LLVN SG
Sbjct: 134 LLEDIDKDT-VDFV---PNYDGSEKEPEVLPARFPNLLVNGSSG 173
>gnl|CDD|233256 TIGR01063, gyrA, DNA gyrase, A subunit. This model describes the
common type II DNA topoisomerase (DNA gyrase). Two
apparently independently arising families, one in the
Proteobacteria and one in Gram-positive lineages, are
both designated toposisomerase IV [DNA metabolism, DNA
replication, recombination, and repair].
Length = 800
Score = 30.0 bits (68), Expect = 1.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 9 NFLLRNISDEAFVYNRHGNPEYDFQLAEPNI----FPYLLVNIGSGVSI 53
LLR+I E + P YD EP + FP LLVN SG+++
Sbjct: 125 EELLRDIDKETVDFV----PNYDGSEQEPTVLPSRFPNLLVNGSSGIAV 169
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 29.7 bits (67), Expect = 2.3
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 50 GVSIMKVESDSKVERIGGT-ATGGGTFWGLGSLLTKAKGFDELLELAEK------GDHRH 102
G+ ++ VE + E +GGT AT GT W G+ A G D+ LE A GD
Sbjct: 39 GLKVLLVE---RTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDALVGDRSP 95
Query: 103 ADM 105
++
Sbjct: 96 EEL 98
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 427
Score = 28.6 bits (65), Expect = 3.8
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 8 CNFLLRNISDEAFVYNRHGNPEYDFQLAEPN----IFPYLLVN----IGSGVS 52
L ++I + + P YD EP I P LLVN I G++
Sbjct: 101 ARELFKDIDKDTVDFV----PNYDGSEKEPTVLPPIIPNLLVNGASGIAVGMA 149
>gnl|CDD|129294 TIGR00190, thiC, thiamine biosynthesis protein ThiC. The thiC
ortholog is designated thiA in Bacillus subtilis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 423
Score = 28.2 bits (63), Expect = 6.5
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 47 IGSGVSIMKVESDSKVERIGGTATGGGTF---WGLGSLLTKA--KGFDELLELAEKGD 99
I +GV + VE + RI G + GG W L K FD +LE+A++ D
Sbjct: 159 IHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYD 216
>gnl|CDD|214330 CHL00001, rpoB, RNA polymerase beta subunit.
Length = 1070
Score = 27.9 bits (63), Expect = 8.7
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 18/74 (24%)
Query: 101 RHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIG 160
R A VRDI+ S +GR+C DT EG A L SL AI IG
Sbjct: 404 RTASFRVRDIH--------------PSHYGRICPIDTSEGI--NAGLIGSL--AIHARIG 445
Query: 161 QIASLYAMMHKLKK 174
SL + +++ +
Sbjct: 446 HWGSLESPFYEISE 459
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.435
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,238,719
Number of extensions: 1463674
Number of successful extensions: 1244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 31
Length of query: 297
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 201
Effective length of database: 6,679,618
Effective search space: 1342603218
Effective search space used: 1342603218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)