RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11663
(297 letters)
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo
sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A*
2i7p_A* 3mk6_A*
Length = 360
Score = 250 bits (639), Expect = 6e-82
Identities = 100/228 (43%), Positives = 144/228 (63%), Gaps = 6/228 (2%)
Query: 1 MECLIQGCNFLLR---NISDEAFVYNRHGNPEYDFQLAE--PNIFPYLLVNIGSGVSIMK 55
++CLIQG ++ N E + + NPE + N +P LLVN+GSGVSI+
Sbjct: 131 LDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILA 190
Query: 56 VESDSKVERIGGTATGGGTFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDY 115
V S +R+ GT+ GGGTF GL LLT + F+E LE+A KGD + D LV+DIYGGDY
Sbjct: 191 VYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDY 250
Query: 116 KCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKV 175
+ GL G +ASSFG + ++ + S+ DLAR+ L I+N+IG IA + A+ + +V
Sbjct: 251 ERFGLQGSAVASSFGNMMSKEKRD-SISKEDLARATLVTITNNIGSIARMCALNENIDRV 309
Query: 176 YFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAIGAFLR 223
F G FLR + +SM +++++ +WSKG +++LFL HEGY GA+GA L
Sbjct: 310 VFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLE 357
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics
consortium, S transferase; HET: ANP; 2.05A
{Staphylococcus aureus subsp} SCOP: c.55.1.14
Length = 287
Score = 185 bits (470), Expect = 2e-57
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 8/194 (4%)
Query: 29 EYDFQLAEPNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGF 88
+ ++ Y+ N+G+G S+ R+GG TGGG GLG LL++ +
Sbjct: 99 GILLKEQGHDLADYIFANVGTGTSLHYF-DGQSQRRVGGIGTGGGMIQGLGYLLSQITDY 157
Query: 89 DELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLA 148
+L ++A+ GD D+ VR IY +PGDL A++FG V ++ + ++
Sbjct: 158 KQLTDMAQHGDRNTIDLKVRHIYKDTEP--PIPGDLTAANFGHVLHH--LDADFTPSNKL 213
Query: 149 RSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLF 208
+++ + + +A A K + + + G N+ L + Y + +
Sbjct: 214 AAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVE---DYTVLRGCKPYY 270
Query: 209 LRHEGYLGAIGAFL 222
+ + + GAIGA
Sbjct: 271 VENGAFSGAIGALY 284
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.028
Identities = 27/194 (13%), Positives = 60/194 (30%), Gaps = 47/194 (24%)
Query: 100 HRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADL-ARSLLFAISND 158
A L ++ + K L P + A D + + A+L + L + S
Sbjct: 27 FFIASQL-QEQF---NKILPEPTEGFA--------AD--DEPTTPAELVGKFLGYVSSLV 72
Query: 159 IGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLGAI 218
+ + L F +L + + H ++ + + + + Y+ A
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 219 G------------AFLRGAECGACQVSYHPLSMHTISF-----SIKYWSKGAVQSLFLRH 261
A R G Q+ I F + Y+ + ++ L+
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQL-------VAI-FGGQGNTDDYFEE--LRDLY--- 177
Query: 262 EGYLGAIGAFLRGA 275
+ Y +G ++ +
Sbjct: 178 QTYHVLVGDLIKFS 191
Score = 31.9 bits (72), Expect = 0.25
Identities = 45/288 (15%), Positives = 81/288 (28%), Gaps = 80/288 (27%)
Query: 11 LLRNISDEAFVYNRHGNPEYDFQ--LAEPNIFP---YL-----------LVNIGSGVSIM 54
L+R D V+ G + L P+ P YL ++ + V
Sbjct: 198 LIRTTLDAEKVFT-QG---LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 55 KVESDSKVE---RIGGTATGGGTFWGL--GSLLTKAKGFDELLELAEK--------GDHR 101
K+ + E + G GL + + ++ K G
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQ---GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 102 H---------ADMLVRDIYGGDYKCLGLPGDLIA-SSFGRVCKQDTMEGQCSEADLAR-- 149
+ +L + + G+P +++ S+ + QD + S +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 150 --SLL-----FAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKG 202
SL+ +S G SLY + L+K L I FS + K
Sbjct: 367 EISLVNGAKNLVVS---GPPQSLYGLNLTLRKAK------APSGLDQSRIPFSER---KL 414
Query: 203 AVQSLFLR-----HEGYL-GAIGAFLRGAECGACQVSYHPLSM---HT 241
+ FL H L A + + + + T
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Score = 31.2 bits (70), Expect = 0.56
Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 64/193 (33%)
Query: 88 FDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADL 147
F+EL RD+Y Y L GDLI S + + L
Sbjct: 170 FEEL----------------RDLY-QTYH--VLVGDLIKFSAETLS-------ELIRTTL 203
Query: 148 ARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQ-- 205
+F +I + + +L + P+S I G +Q
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTP-------DKDYLLSIPISCPLI---------GVIQLA 247
Query: 206 --SLFLRHEGYL-GAIGAFLRGA-ECGACQVSYHPLSMHTISFSIKYW------SKGAVQ 255
+ + G+ G + ++L+GA V+ ++ + S W + A+
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE---TDS---WESFFVSVRKAIT 301
Query: 256 SLF---LR-HEGY 264
LF +R +E Y
Sbjct: 302 VLFFIGVRCYEAY 314
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 27.3 bits (61), Expect = 8.2
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 28 PEYDFQLAEPNI----FPYLLVNIGSG 50
YD EP++ FP LL N SG
Sbjct: 349 DNYDGNEREPSVLPARFPNLLANGASG 375
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 26.9 bits (60), Expect = 9.2
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 12/46 (26%)
Query: 11 LLRNISDEA--FVYNRHGNPEYDFQLAEPNI----FPYLLVNIGSG 50
LL + + N +D L EP P +L+N +G
Sbjct: 400 LLSELGQGTSEWQDN------FDGSLKEPITLPARVPNILLNGTTG 439
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 27.1 bits (61), Expect = 9.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 28 PEYDFQLAEPNI----FPYLLVNIGSGVS 52
+D EP + FP LLVN +G+S
Sbjct: 143 WNFDDTEKEPTVLPAAFPNLLVNGSTGIS 171
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 26.7 bits (60), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 28 PEYDFQLAEPNI----FPYLLVNIGSG 50
P YD ++ EP + FP LL N G
Sbjct: 124 PNYDGRVQEPTVLPSRFPNLLANGSGG 150
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding,
isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia
psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Length = 500
Score = 26.8 bits (60), Expect = 9.5
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 28 PEYDFQLAEPNI----FPYLLVNIGSGV 51
P YD P + P LLVN SG+
Sbjct: 117 PNYDGTEHIPAVMPTRVPNLLVNGTSGI 144
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 26.7 bits (60), Expect = 9.7
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 28 PEYDFQLAEPNI----FPYLLVNIGSGVS 52
P YD EP + FP LLVN +G+S
Sbjct: 167 PNYDDTTLEPMVLPSRFPNLLVNGSTGIS 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.435
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,672,560
Number of extensions: 279862
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 16
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)